WorldWideScience

Sample records for accelerating epistasis analysis

  1. Accelerating epistasis analysis in human genetics with consumer graphics hardware

    Directory of Open Access Journals (Sweden)

    Cancare Fabio

    2009-07-01

    Full Text Available Abstract Background Human geneticists are now capable of measuring more than one million DNA sequence variations from across the human genome. The new challenge is to develop computationally feasible methods capable of analyzing these data for associations with common human disease, particularly in the context of epistasis. Epistasis describes the situation where multiple genes interact in a complex non-linear manner to determine an individual's disease risk and is thought to be ubiquitous for common diseases. Multifactor Dimensionality Reduction (MDR is an algorithm capable of detecting epistasis. An exhaustive analysis with MDR is often computationally expensive, particularly for high order interactions. This challenge has previously been met with parallel computation and expensive hardware. The option we examine here exploits commodity hardware designed for computer graphics. In modern computers Graphics Processing Units (GPUs have more memory bandwidth and computational capability than Central Processing Units (CPUs and are well suited to this problem. Advances in the video game industry have led to an economy of scale creating a situation where these powerful components are readily available at very low cost. Here we implement and evaluate the performance of the MDR algorithm on GPUs. Of primary interest are the time required for an epistasis analysis and the price to performance ratio of available solutions. Findings We found that using MDR on GPUs consistently increased performance per machine over both a feature rich Java software package and a C++ cluster implementation. The performance of a GPU workstation running a GPU implementation reduces computation time by a factor of 160 compared to an 8-core workstation running the Java implementation on CPUs. This GPU workstation performs similarly to 150 cores running an optimized C++ implementation on a Beowulf cluster. Furthermore this GPU system provides extremely cost effective

  2. Epistasis can accelerate adaptive diversification in haploid asexual populations.

    Science.gov (United States)

    Griswold, Cortland K

    2015-03-01

    A fundamental goal of the biological sciences is to determine processes that facilitate the evolution of diversity. These processes can be separated into ecological, physiological, developmental and genetic. An ecological process that facilitates diversification is frequency-dependent selection caused by competition. Models of frequency-dependent adaptive diversification have generally assumed a genetic basis of phenotype that is non-epistatic. Here, we present a model that indicates diversification is accelerated by an epistatic basis of phenotype in combination with a competition model that invokes frequency-dependent selection. Our model makes use of a genealogical model of epistasis and insights into the effects of balancing selection on the genealogical structure of a population to understand how epistasis can facilitate diversification. The finding that epistasis facilitates diversification may be informative with respect to empirical results that indicate an epistatic basis of phenotype in experimental bacterial populations that experienced adaptive diversification.

  3. Epistasis analysis using artificial intelligence.

    Science.gov (United States)

    Moore, Jason H; Hill, Doug P

    2015-01-01

    Here we introduce artificial intelligence (AI) methodology for detecting and characterizing epistasis in genetic association studies. The ultimate goal of our AI strategy is to analyze genome-wide genetics data as a human would using sources of expert knowledge as a guide. The methodology presented here is based on computational evolution, which is a type of genetic programming. The ability to generate interesting solutions while at the same time learning how to solve the problem at hand distinguishes computational evolution from other genetic programming approaches. We provide a general overview of this approach and then present a few examples of its application to real data.

  4. JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis

    Science.gov (United States)

    Colak, Recep; Kim, TaeHyung; Kazan, Hilal; Oh, Yoomi; Cruz, Miguel; Valladares-Salgado, Adan; Peralta, Jesus; Escobedo, Jorge; Parra, Esteban J.; Kim, Philip M.; Goldenberg, Anna

    2016-01-01

    Motivation: Rapid advances in genotyping and genome-wide association studies have enabled the discovery of many new genotype–phenotype associations at the resolution of individual markers. However, these associations explain only a small proportion of theoretically estimated heritability of most diseases. In this work, we propose an integrative mixture model called JBASE: joint Bayesian analysis of subphenotypes and epistasis. JBASE explores two major reasons of missing heritability: interactions between genetic variants, a phenomenon known as epistasis and phenotypic heterogeneity, addressed via subphenotyping. Results: Our extensive simulations in a wide range of scenarios repeatedly demonstrate that JBASE can identify true underlying subphenotypes, including their associated variants and their interactions, with high precision. In the presence of phenotypic heterogeneity, JBASE has higher Power and lower Type 1 Error than five state-of-the-art approaches. We applied our method to a sample of individuals from Mexico with Type 2 diabetes and discovered two novel epistatic modules, including two loci each, that define two subphenotypes characterized by differences in body mass index and waist-to-hip ratio. We successfully replicated these subphenotypes and epistatic modules in an independent dataset from Mexico genotyped with a different platform. Availability and implementation: JBASE is implemented in C++, supported on Linux and is available at http://www.cs.toronto.edu/∼goldenberg/JBASE/jbase.tar.gz. The genotype data underlying this study are available upon approval by the ethics review board of the Medical Centre Siglo XXI. Please contact Dr Miguel Cruz at mcruzl@yahoo.com for assistance with the application. Contact: anna.goldenberg@utoronto.ca Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26411870

  5. Quantitative epistasis analysis and pathway inference from genetic interaction data.

    Directory of Open Access Journals (Sweden)

    Hilary Phenix

    2011-05-01

    Full Text Available Inferring regulatory and metabolic network models from quantitative genetic interaction data remains a major challenge in systems biology. Here, we present a novel quantitative model for interpreting epistasis within pathways responding to an external signal. The model provides the basis of an experimental method to determine the architecture of such pathways, and establishes a new set of rules to infer the order of genes within them. The method also allows the extraction of quantitative parameters enabling a new level of information to be added to genetic network models. It is applicable to any system where the impact of combinatorial loss-of-function mutations can be quantified with sufficient accuracy. We test the method by conducting a systematic analysis of a thoroughly characterized eukaryotic gene network, the galactose utilization pathway in Saccharomyces cerevisiae. For this purpose, we quantify the effects of single and double gene deletions on two phenotypic traits, fitness and reporter gene expression. We show that applying our method to fitness traits reveals the order of metabolic enzymes and the effects of accumulating metabolic intermediates. Conversely, the analysis of expression traits reveals the order of transcriptional regulatory genes, secondary regulatory signals and their relative strength. Strikingly, when the analyses of the two traits are combined, the method correctly infers ~80% of the known relationships without any false positives.

  6. Analysis of heterogeneity and epistasis in physiological mixed populations by combined structural equation modelling and latent class analysis

    DEFF Research Database (Denmark)

    Fenger, Mogens; Linneberg, Allan; Werge, Thomas;

    2008-01-01

    BACKGROUND: Biological systems are interacting, molecular networks in which genetic variation contributes to phenotypic heterogeneity. This heterogeneity is traditionally modelled as a dichotomous trait (e.g. affected vs. non-affected). This is far too simplistic considering the complexity......: The major conclusions from this study are that the likelihood of detecting true association between genetic variants and complex traits increases tremendously when studied in physiological homogenous subpopulations and on inclusion of epistasis in the analysis, whereas epistasis (i.e. genetic networks...

  7. Epistasis analysis for quantitative traits by functional regression model.

    Science.gov (United States)

    Zhang, Futao; Boerwinkle, Eric; Xiong, Momiao

    2014-06-01

    The critical barrier in interaction analysis for rare variants is that most traditional statistical methods for testing interactions were originally designed for testing the interaction between common variants and are difficult to apply to rare variants because of their prohibitive computational time and poor ability. The great challenges for successful detection of interactions with next-generation sequencing (NGS) data are (1) lack of methods for interaction analysis with rare variants, (2) severe multiple testing, and (3) time-consuming computations. To meet these challenges, we shift the paradigm of interaction analysis between two loci to interaction analysis between two sets of loci or genomic regions and collectively test interactions between all possible pairs of SNPs within two genomic regions. In other words, we take a genome region as a basic unit of interaction analysis and use high-dimensional data reduction and functional data analysis techniques to develop a novel functional regression model to collectively test interactions between all possible pairs of single nucleotide polymorphisms (SNPs) within two genome regions. By intensive simulations, we demonstrate that the functional regression models for interaction analysis of the quantitative trait have the correct type 1 error rates and a much better ability to detect interactions than the current pairwise interaction analysis. The proposed method was applied to exome sequence data from the NHLBI's Exome Sequencing Project (ESP) and CHARGE-S study. We discovered 27 pairs of genes showing significant interactions after applying the Bonferroni correction (P-values < 4.58 × 10(-10)) in the ESP, and 11 were replicated in the CHARGE-S study.

  8. Analysis pipeline for the epistasis search – statistical versus biological filtering

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    Xiangqing eSun

    2014-04-01

    Full Text Available Gene-gene interactions may contribute to the genetic variation underlying complex traits but have not always been taken fully into account. Statistical analyses that consider gene-gene interaction may increase the power of detecting associations, especially for low-marginal-effect markers, and may explain in part the missing heritability. Detecting pair-wise and higher-order interactions genome-wide requires enormous computational power. Filtering pipelines increase the computational speed by limiting the number of tests performed. We summarize existing filtering approaches to detect epistasis, after distinguishing the purposes that lead us to search for epistasis. Statistical filtering includes quality control on the basis of single marker statistics to avoid the analysis of bad and least informative data, and limits the search space for finding interactions. Biological filtering includes targeting specific pathways, integrating various databases based on known biological and metabolic pathways, gene function ontology and protein-protein interactions. It is increasingly possible to target single-nucleotide polymorphisms that have defined functions on gene expression, though not belonging to protein-coding genes. Filtering can improve the power of an interaction association study, but also increases the chance of missing important findings.

  9. Epistasis Test in Meta-Analysis: A Multi-Parameter Markov Chain Monte Carlo Model for Consistency of Evidence.

    Science.gov (United States)

    Lin, Chin; Chu, Chi-Ming; Su, Sui-Lung

    2016-01-01

    Conventional genome-wide association studies (GWAS) have been proven to be a successful strategy for identifying genetic variants associated with complex human traits. However, there is still a large heritability gap between GWAS and transitional family studies. The "missing heritability" has been suggested to be due to lack of studies focused on epistasis, also called gene-gene interactions, because individual trials have often had insufficient sample size. Meta-analysis is a common method for increasing statistical power. However, sufficient detailed information is difficult to obtain. A previous study employed a meta-regression-based method to detect epistasis, but it faced the challenge of inconsistent estimates. Here, we describe a Markov chain Monte Carlo-based method, called "Epistasis Test in Meta-Analysis" (ETMA), which uses genotype summary data to obtain consistent estimates of epistasis effects in meta-analysis. We defined a series of conditions to generate simulation data and tested the power and type I error rates in ETMA, individual data analysis and conventional meta-regression-based method. ETMA not only successfully facilitated consistency of evidence but also yielded acceptable type I error and higher power than conventional meta-regression. We applied ETMA to three real meta-analysis data sets. We found significant gene-gene interactions in the renin-angiotensin system and the polycyclic aromatic hydrocarbon metabolism pathway, with strong supporting evidence. In addition, glutathione S-transferase (GST) mu 1 and theta 1 were confirmed to exert independent effects on cancer. We concluded that the application of ETMA to real meta-analysis data was successful. Finally, we developed an R package, etma, for the detection of epistasis in meta-analysis [etma is available via the Comprehensive R Archive Network (CRAN) at https://cran.r-project.org/web/packages/etma/index.html].

  10. Epistasis Test in Meta-Analysis: A Multi-Parameter Markov Chain Monte Carlo Model for Consistency of Evidence

    Science.gov (United States)

    Lin, Chin; Chu, Chi-Ming; Su, Sui-Lung

    2016-01-01

    Conventional genome-wide association studies (GWAS) have been proven to be a successful strategy for identifying genetic variants associated with complex human traits. However, there is still a large heritability gap between GWAS and transitional family studies. The “missing heritability” has been suggested to be due to lack of studies focused on epistasis, also called gene–gene interactions, because individual trials have often had insufficient sample size. Meta-analysis is a common method for increasing statistical power. However, sufficient detailed information is difficult to obtain. A previous study employed a meta-regression-based method to detect epistasis, but it faced the challenge of inconsistent estimates. Here, we describe a Markov chain Monte Carlo-based method, called “Epistasis Test in Meta-Analysis” (ETMA), which uses genotype summary data to obtain consistent estimates of epistasis effects in meta-analysis. We defined a series of conditions to generate simulation data and tested the power and type I error rates in ETMA, individual data analysis and conventional meta-regression-based method. ETMA not only successfully facilitated consistency of evidence but also yielded acceptable type I error and higher power than conventional meta-regression. We applied ETMA to three real meta-analysis data sets. We found significant gene–gene interactions in the renin–angiotensin system and the polycyclic aromatic hydrocarbon metabolism pathway, with strong supporting evidence. In addition, glutathione S-transferase (GST) mu 1 and theta 1 were confirmed to exert independent effects on cancer. We concluded that the application of ETMA to real meta-analysis data was successful. Finally, we developed an R package, etma, for the detection of epistasis in meta-analysis [etma is available via the Comprehensive R Archive Network (CRAN) at https://cran.r-project.org/web/packages/etma/index.html]. PMID:27045371

  11. A method for detecting epistasis in genome-wide studies using case-control multi-locus association analysis

    OpenAIRE

    Galan Jose; Quintas Antonio; Royo Jose; Sáez María; Bermudo Fernando; González-Pérez Antonio; Gayán Javier; Morón Francisco; Ramirez-Lorca Reposo; Real Luis; Ruiz Agustín

    2008-01-01

    Abstract Background The difficulty in elucidating the genetic basis of complex diseases roots in the many factors that can affect the development of a disease. Some of these genetic effects may interact in complex ways, proving undetectable by current single-locus methodology. Results We have developed an analysis tool called Hypothesis Free Clinical Cloning (HFCC) to search for genome-wide epistasis in a case-control design. HFCC combines a relatively fast computing algorithm for genome-wide...

  12. Epistasis Test in Meta-Analysis: A Multi-Parameter Markov Chain Monte Carlo Model for Consistency of Evidence

    OpenAIRE

    Lin, Chin; Chu, Chi-Ming; Su, Sui-Lung

    2016-01-01

    Conventional genome-wide association studies (GWAS) have been proven to be a successful strategy for identifying genetic variants associated with complex human traits. However, there is still a large heritability gap between GWAS and transitional family studies. The “missing heritability” has been suggested to be due to lack of studies focused on epistasis, also called gene–gene interactions, because individual trials have often had insufficient sample size. Meta-analysis is a common method f...

  13. Dynamic QTL and epistasis analysis on seedling root traits in upland cotton.

    Science.gov (United States)

    Liang, Qingzhi; Li, Pengbo; Hu, Cheng; Hua, Hua; Li, Zhaohu; Rong, Yihua; Wang, Kunbo; Hua, Jinping

    2014-04-01

    Roots are involved in acquisition of water and nutrients, as well as in providing structural support to plant. The root system provides a dynamic model for developmental analysis. Here, we investigated quantitative trait loci (QTL), dynamic conditional QTL and epistatic interactions for seedling root traits using an upland cotton F2 population and a constructed genetic map. Totally, 37 QTLs for root traits, 35 dynamic conditional QTLs based on the net increased amount of root traits (root tips, forks, length, surface area and volume) (i) after transplanting 10 days compared to 5 days, and (ii) after transplanting 15 days to 10 days were detected. Obvious dynamic characteristic of QTL and dynamic conditional QTL existed at different developmental stages of root because QTL and dynamic conditional QTL had not been detected simultaneously. We further confirmed that additive and dominance effects of QTL qRSA-chr1-1 in interval time 5 to 10 DAT (days after transplant) offset the effects in 10 to 15 DAT. Lots of two-locus interactions for root traits were identified unconditionally or dynamically, and a few epistatic interactions were only detected simultaneously in interval time of 5-10 DAT and 10-15 DAT, suggesting different interactive genetic mechanisms on root development at different stages. Dynamic conditional QTL and epistasis effects provide new attempts to understand the dynamics of roots and provide clues for root architecture selection in upland cotton. PMID:24840824

  14. A method for detecting epistasis in genome-wide studies using case-control multi-locus association analysis

    Directory of Open Access Journals (Sweden)

    Galan Jose

    2008-07-01

    Full Text Available Abstract Background The difficulty in elucidating the genetic basis of complex diseases roots in the many factors that can affect the development of a disease. Some of these genetic effects may interact in complex ways, proving undetectable by current single-locus methodology. Results We have developed an analysis tool called Hypothesis Free Clinical Cloning (HFCC to search for genome-wide epistasis in a case-control design. HFCC combines a relatively fast computing algorithm for genome-wide epistasis detection, with the flexibility to test a variety of different epistatic models in multi-locus combinations. HFCC has good power to detect multi-locus interactions simulated under a variety of genetic models and noise conditions. Most importantly, HFCC can accomplish exhaustive genome-wide epistasis search with large datasets as demonstrated with a 400,000 SNP set typed on a cohort of Parkinson's disease patients and controls. Conclusion With the current availability of genetic studies with large numbers of individuals and genetic markers, HFCC can have a great impact in the identification of epistatic effects that escape the standard single-locus association analyses.

  15. Analysis of heterogeneity and epistasis in physiological mixed populations by combined structural equation modelling and latent class analysis

    Directory of Open Access Journals (Sweden)

    Werge Thomas

    2008-07-01

    studied in physiological homogenous subpopulations and on inclusion of epistasis in the analysis, whereas epistasis (i.e. genetic networks is ubiquitous and should be the basis in modelling any biological process.

  16. Analysis of Accelerated Gossip Algorithms

    NARCIS (Netherlands)

    Liu, J.; Anderson, B.D.O.; Cao, M.; Morse, A.S.

    2009-01-01

    This paper investigates accelerated gossip algorithms for distributed computations in networks where shift-registers are utilized at each node. By using tools from matrix analysis, we prove the existence of the desired acceleration and establish the fastest rate of convergence in expectation for two

  17. Experimental evolution and epistasis in variable environments

    Science.gov (United States)

    Tans, Sander

    2014-03-01

    Environmental changes trigger cellular responses, but also impose selective pressures on the underlying regulatory systems. To disentangle this complex interplay we follow a synthetic biology approach. By linking the output of regulatory systems to bacterial growth, quantified temporally variable selective pressures can be applied to regulatory systems. This approach allows one to explore how networks evolve in complex variable environments. Epistatic interactions that underlie evolutionary constraint have mainly been studied for constant external conditions. However, environmental changes may modulate epistasis and hence affect genetic constraints. We investigate genetic constraints in the adaptive evolution of a novel regulatory function in variable environments, using the lac repressor, LacI, as a model system. We systematically reconstructed mutational trajectories from wild type LacI to three different variants that each exhibit an inverse response to the inducing ligand IPTG, and analyzed the higher-order interactions between genetic and environmental changes. We find epistasis to depend strongly on the environment. As a result, mutational steps essential to inversion but inaccessible by positive selection in one environment, become accessible in another. We present a graphical method to analyze the observed complex higher-order interactions between multiple mutations and environmental change, and show how they can be explained by a combination of mutational effects on allostery and thermodynamic stability. This dependency of genetic constraint on the environment should fundamentally affect evolutionary dynamics and phylogenetic analysis. NWO-FOM

  18. Accelerating pulsar timing data analysis

    CERN Document Server

    van Haasteren, Rutger

    2012-01-01

    The analysis of pulsar timing data, especially in pulsar timing array (PTA) projects, has encountered practical difficulties: evaluating the likelihood and/or correlation-based statistics can become prohibitively computationally expensive for large datasets. In situations where a stochastic signal of interest has a power spectral density that dominates the noise in a limited bandwidth of the total frequency domain (e.g. the isotropic background of gravitational waves), a linear transformation exists that transforms the timing residuals to a basis in which virtually all the information about the stochastic signal of interest is contained in a small fraction of basis vectors. By only considering such a small subset of these "generalised residuals", the dimensionality of the data analysis problem is greatly reduced, which can cause a large speedup in the evaluation of the likelihood: the ABC-method (Acceleration By Compression). The compression fidelity, calculable with crude estimates of the signal and noise, c...

  19. Epistasis and Its Contribution to Genetic Variance Components

    OpenAIRE

    Cheverud, J M; Routman, E J

    1995-01-01

    We present a new parameterization of physiological epistasis that allows the measurement of epistasis separate from its effects on the interaction (epistatic) genetic variance component. Epistasis is the deviation of two-locus genotypic values from the sum of the contributing single-locus genotypic values. This parameterization leads to statistical tests for epistasis given estimates of two-locus genotypic values such as can be obtained from quantitative trait locus studies. The contributions...

  20. Pervasive cryptic epistasis in molecular evolution.

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    Mark Lunzer

    2010-10-01

    Full Text Available The functional effects of most amino acid replacements accumulated during molecular evolution are unknown, because most are not observed naturally and the possible combinations are too numerous. We created 168 single mutations in wild-type Escherichia coli isopropymalate dehydrogenase (IMDH that match the differences found in wild-type Pseudomonas aeruginosa IMDH. 104 mutant enzymes performed similarly to E. coli wild-type IMDH, one was functionally enhanced, and 63 were functionally compromised. The transition from E. coli IMDH, or an ancestral form, to the functional wild-type P. aeruginosa IMDH requires extensive epistasis to ameliorate the combined effects of the deleterious mutations. This result stands in marked contrast with a basic assumption of molecular phylogenetics, that sites in sequences evolve independently of each other. Residues that affect function are scattered haphazardly throughout the IMDH structure. We screened for compensatory mutations at three sites, all of which lie near the active site and all of which are among the least active mutants. No compensatory mutations were found at two sites indicating that a single site may engage in compound epistatic interactions. One complete and three partial compensatory mutations of the third site are remote and lie in a different domain. This demonstrates that epistatic interactions can occur between distant (>20Å sites. Phylogenetic analysis shows that incompatible mutations were fixed in different lineages.

  1. Confronting the missing epistasis problem: on the reproducibility of gene-gene interactions.

    Science.gov (United States)

    Murk, William; Bracken, Michael B; DeWan, Andrew T

    2015-08-01

    Epistasis (gene-gene interaction) is thought to play an integral role in the genetic basis of complex traits, and a significant amount of research has been invested into identifying this phenomenon in human disease. However, the overall success of empirical studies of epistasis in humans is unclear, as such studies are rarely systematically evaluated. Here, we have selected asthma as an example of a well-studied, complex human disease, and provide a critical analysis and replication attempt of nearly all prior reports of epistasis for this disease. Of 191 previously reported interactions, we find that 39.8% were not originally identified using an explicit test for interaction and thus may not have been true epistatic effects to begin with. Moreover, directions of effect were not described for 46.1% of the interactions, which prevents their rigorous replication. In the original studies, attempts at replication were made for 15.2% of the interactions, and 7.3% were actually replicated. In the current study, we were able to evaluate 85.9% of the interactions using a large asthma dataset from the GABRIEL Consortium. None of these interactions could be replicated based on strict criteria. However, we found nominally significant (p < 0.05) evidence in support of 23.8% of the evaluated interactions. Although many reports of epistasis are not robustly supported in the published literature, our results suggest that at least some of these reports may have been true-positive examples of epistasis. In general, improvements in empirical studies of epistasis are called for, in order to better understand the importance of this phenomenon in human disease. PMID:25998948

  2. A survey about methods dedicated to epistasis detection

    Directory of Open Access Journals (Sweden)

    Clément eNiel

    2015-09-01

    Full Text Available During the past decade, findings of genome-wide association studies (GWAS improved our knowledge and understanding of disease genetics. To date, thousands of SNPs have been associated to diseases and other complex traits. Statistical analysis typically looks for association between a phenotype and a SNP taken individually via single-locus tests. However, geneticists admit this is an oversimplified approach to tackle the complexity of underlying biological mechanisms. Interaction between SNPs, namely epistasis, must be considered. Unfortunately, epistasis detection gives rise to analytic challenges since analyzing every SNP combination is at present impractical at a genome-wide scale. In this review, we will present the main strategies recently proposed to detect epistatic interactions, along with their operating principle. Some of these methods are exhaustive, such as multifactor dimensionality reduction, likelihood ratio-based tests or receiver operating characteristic curve analysis; some are non-exhaustive, such as machine learning techniques (random forests, Bayesian networks or combinatorial optimization approaches (ant colony optimization, computational evolution system.

  3. Should evolutionary geneticists worry about higher-order epistasis?

    Science.gov (United States)

    Weinreich, Daniel M; Lan, Yinghong; Wylie, C Scott; Heckendorn, Robert B

    2013-12-01

    Natural selection drives evolving populations up the fitness landscape, the projection from nucleotide sequence space to organismal reproductive success. While it has long been appreciated that topographic complexities on fitness landscapes can arise only as a consequence of epistatic interactions between mutations, evolutionary genetics has mainly focused on epistasis between pairs of mutations. Here we propose a generalization to the classical population genetic treatment of pairwise epistasis that yields expressions for epistasis among arbitrary subsets of mutations of all orders (pairwise, three-way, etc.). Our approach reveals substantial higher-order epistasis in almost every published fitness landscape. Furthermore we demonstrate that higher-order epistasis is critically important in two systems we know best. We conclude that higher-order epistasis deserves empirical and theoretical attention from evolutionary geneticists.

  4. Investigating statistical epistasis in complex disorders.

    Science.gov (United States)

    Turton, James C; Bullock, James; Medway, Christopher; Shi, Hui; Brown, Kristelle; Belbin, Olivia; Kalsheker, Noor; Carrasquillo, Minerva M; Dickson, Dennis W; Graff-Radford, Neill R; Petersen, Ronald C; Younkin, Steven G; Morgan, Kevin

    2011-01-01

    The missing heritability exhibited by late-onset Alzheimer's disease is unexplained and has been partly attributed to epistatic interaction. Methods available to explore this are often based on logistic regression and allow for determination of deviation from an expected outcome as a result of statistical epistasis. Three such methodologies including Synergy Factor and the PLINK modules, -epistasis and -fast-epistasis, were applied to study an epistatic interaction between interleukin-6 and interleukin-10. The models analyzed consisted of two synergistic interactions (SF ≈ 4.2 and 1.6) and two antagonistic interactions (SF ≈ 0.9 and 0.6). As with any statistical test, power to detect association is paramount; and most studies will be underpowered for the task. However, the availability of large sample sizes through genome-wide association studies make it feasible to examine approaches for determining epistatic interactions. This study documents the sample sizes needed to achieve a statistically significant outcome from each of the methods examined and discusses the limitations/advantages of the chosen approaches.

  5. Compensatory mutations cause excess of antagonistic epistasis in RNA secondary structure folding

    CERN Document Server

    Wilke, C O; Adami, C; Wilke, Claus O; Lenski, Richard E; Adami, Christoph

    2003-01-01

    Background: The rate at which fitness declines as an organism's genome accumulates random mutations is an important variable in several evolutionary theories. At an intuitive level, it might seem natural that random mutations should tend to interact synergistically, such that the rate of mean fitness decline accelerates as the number of random mutations is increased. However, in a number of recent studies, a prevalence of antagonistic epistasis (the tendency of multiple mutations to have a mitigating rather than reinforcing effect) has been observed. Results: We studied in silico the net amount and form of epistatic interactions in RNA secondary structure folding by measuring the fraction of neutral mutants as a function of mutational distance d. We found a clear prevalence of antagonistic epistasis in RNA secondary structure folding. By relating the fraction of neutral mutants at distance d to the average neutrality at distance d, we showed that this prevalence derives from the existence of many compensatory...

  6. Accelerator physics analysis with interactive tools

    International Nuclear Information System (INIS)

    Work is in progress on interactive tools for linear and nonlinear accelerator design, analysis, and simulation using X-based graphics. The BEAMLINE and MXYZPTLK class libraries, were used with an X Windows graphics library to build a program for interactively editing lattices and studying their properties

  7. Accelerator based techniques for aerosol analysis

    International Nuclear Information System (INIS)

    At the 3 MV Tandetron accelerator of the LABEC laboratory of INFN (Florence, Italy) an external beam facility is fully dedicated to PIXE-PIGE measurements of elemental composition of atmospheric aerosols. Examples regarding recent monitoring campaigns, performed in urban and remote areas, both on a daily basis and with high time resolution, as well as with size selection, will be presented. It will be evidenced how PIXE can provide unique information in aerosol studies or can play a complementary role to traditional chemical analysis. Finally a short presentation of 14C analysis of the atmospheric aerosol by Accelerator Mass Spectrometry (AMS) for the evaluation of the contributions from either fossil fuel combustion or modern sources (wood burning, biogenic activity) will be given. (author)

  8. Protein evolution. Pervasive degeneracy and epistasis in a protein-protein interface.

    Science.gov (United States)

    Podgornaia, Anna I; Laub, Michael T

    2015-02-01

    Mapping protein sequence space is a difficult problem that necessitates the analysis of 20(N) combinations for sequences of length N. We systematically mapped the sequence space of four key residues in the Escherichia coli protein kinase PhoQ that drive recognition of its substrate PhoP. We generated a library containing all 160,000 variants of PhoQ at these positions and used a two-step selection coupled to next-generation sequencing to identify 1659 functional variants. Our results reveal extensive degeneracy in the PhoQ-PhoP interface and epistasis, with the effect of individual substitutions often highly dependent on context. Together, epistasis and the genetic code create a pattern of connectivity of functional variants in sequence space that likely constrains PhoQ evolution. Consequently, the diversity of PhoQ orthologs is substantially lower than that of functional PhoQ variants. PMID:25657251

  9. From classical genetics to quantitative genetics to systems biology: modeling epistasis.

    Directory of Open Access Journals (Sweden)

    David L Aylor

    2008-03-01

    Full Text Available Gene expression data has been used in lieu of phenotype in both classical and quantitative genetic settings. These two disciplines have separate approaches to measuring and interpreting epistasis, which is the interaction between alleles at different loci. We propose a framework for estimating and interpreting epistasis from a classical experiment that combines the strengths of each approach. A regression analysis step accommodates the quantitative nature of expression measurements by estimating the effect of gene deletions plus any interaction. Effects are selected by significance such that a reduced model describes each expression trait. We show how the resulting models correspond to specific hierarchical relationships between two regulator genes and a target gene. These relationships are the basic units of genetic pathways and genomic system diagrams. Our approach can be extended to analyze data from a variety of experiments, multiple loci, and multiple environments.

  10. Accelerator physics analysis with an integrated toolkit

    International Nuclear Information System (INIS)

    Work is in progress on an integrated software toolkit for linear and nonlinear accelerator design, analysis, and simulation. As a first application, ''beamline'' and ''MXYZPTLK'' (differential algebra) class libraries, were used with an X Windows graphics library to build an user-friendly, interactive phase space tracker which, additionally, finds periodic orbits. This program was used to analyse a theoretical lattice which contains octupoles and decapoles to find the 20th order, stable and unstable periodic orbits and to explore the local phase space structure

  11. Acceleration of Data Analysis Applications using GPUs

    Science.gov (United States)

    Fillmore, D.; Messmer, P.; Mullowney, P.; Amyx, K.

    2008-12-01

    The vast amount of data collected by present and future scientific instruments, sensors and numerical models requires a significant increase in computing power for analysis. In many cases, processing time on a single workstation becomes impractical. While clusters of commodity processors can be utilized to accelerate some of these tasks, the relatively high software development cost, as well as acquisition and operational costs, make them less attractive for broad use. Over the past few years, another class of architectures has gained some popularity, namely heterogeneous architectures, which consist of general purpose processors connected to specialized processors. One of the most prominent examples are Graphics Processing Units (GPUs), which offer a tremendous amount of floating-point processing power due to demand for high-quality graphics in the computer game market. However, in order to harness this processing power, software developers have to develop with a detailed understanding of the underlying hardware. This burden on the developer is often hardly justifiable considering the rapid evolution of the hardware. In this talk, we will introduce GPULib, an open source library that enables scientists to accelerate their data analysis tasks using the GPUs already installed in their system from within high-level languages like IDL or MATLAB, and present examples and possible speedup from real-world data analysis applications. This work is funded through NASA Phase II SBIR Grant NNG06CA13C.

  12. Code comparison for accelerator design and analysis

    International Nuclear Information System (INIS)

    This paper presents a comparison between results obtained from standard accelerator physics codes used for the design and analysis of sychrotrons and storage rings, with programs SYNCH, MAD, HARMON, PATRICIA, PATPET, BETA, DIMAD, MARYLIE and RACETRACK. In the analysis the authors have considered 5 (various size) lattices with large and small bend angles including AGS Booster (10 degrees bend) RHIC (2.24 degrees), SXLS, XLS (XUV ring with 45 degrees bend) and X-RAY rings. The differences in the integration methods used and the treatment of the fringe fields in these codes could lead to different results. The inclusion of nonlinear (e.g. dipole) terms may be necessary in these calculations specially for a small ring

  13. Code comparison for accelerator design and analysis

    International Nuclear Information System (INIS)

    We present a comparison between results obtained from standard accelerator physics codes used for the design and analysis of synchrotrons and storage rings, with programs SYNCH, MAD, HARMON, PATRICIA, PATPET, BETA, DIMAD, MARYLIE and RACE-TRACK. In our analysis we have considered 5 (various size) lattices with large and small angles including AGS Booster (10/degree/ bend), RHIC (2.24/degree/), SXLS, XLS (XUV ring with 45/degree/ bend) and X-RAY rings. The differences in the integration methods used and the treatment of the fringe fields in these codes could lead to different results. The inclusion of nonlinear (e.g., dipole) terms may be necessary in these calculations specially for a small ring. 12 refs., 6 figs., 10 tabs

  14. Performance analysis of acceleration resolution for radar signal

    Institute of Scientific and Technical Information of China (English)

    ZHAO; Hongzhong; (赵宏钟); FU; Qiang; (付; 强)

    2003-01-01

    The high acceleration of moving targets has brought severe problems in radar signal processing, such as the decrease in output signal-noise-ratio and the deterioration of Doppler resolution. This paper presents an acceleration ambiguity function (AAF) for characterizing the acceleration effects and the acceleration resolution property in radar signal processing. The definition of the acceleration resolution based on AAF is also presented. Using AAF as an analyzing tool, some factors are derived including the loss factor of output SNR, the broadening factor of Doppler resolution, and the optimal accumulative time (OPT) caused by acceleration in linear-phase matched filtering. The convergent property of quadratic-phase matched-filter for searching for and estimating the acceleration is discussed. The results and conclusions are helpful for the quantitative analysis of the acceleration effects on signal processing, and for evaluation of the performance of acceleration in radar signal waveform design.

  15. Accelerated life models modeling and statistical analysis

    CERN Document Server

    Bagdonavicius, Vilijandas

    2001-01-01

    Failure Time DistributionsIntroductionParametric Classes of Failure Time DistributionsAccelerated Life ModelsIntroductionGeneralized Sedyakin's ModelAccelerated Failure Time ModelProportional Hazards ModelGeneralized Proportional Hazards ModelsGeneralized Additive and Additive-Multiplicative Hazards ModelsChanging Shape and Scale ModelsGeneralizationsModels Including Switch-Up and Cycling EffectsHeredity HypothesisSummaryAccelerated Degradation ModelsIntroductionDegradation ModelsModeling the Influence of Explanatory Varia

  16. Epistasis: Obstacle or Advantage for Mapping Complex Traits?

    NARCIS (Netherlands)

    Verhoeven, K.J.F.; Casella, G.; McIntyre, L.M.

    2010-01-01

    Identification of genetic loci in complex traits has focused largely on one-dimensional genome scans to search for associations between single markers and the phenotype. There is mounting evidence that locus interactions, or epistasis, are a crucial component of the genetic architecture of biologica

  17. Comparison of Multi-field Coupling Analysis of Accelerator Cavity

    Institute of Scientific and Technical Information of China (English)

    LI; Chun-guang; LI; Jin-hai

    2013-01-01

    In the high power accelerator cavity,the joule heat produced by the electromagnetic fields causes the temperature of the cavity rising which leads to frequency changed,called frequency shift.The analysis of the effect of power to the frequency shift is an important task of accelerator cavity design.It involves heat,structure and high frequency analysis.

  18. The evolution of sex and recombination in response to abiotic or coevolutionary fluctuations in epistasis.

    Science.gov (United States)

    Gandon, Sylvain; Otto, Sarah P

    2007-04-01

    Evolutionary biologists have identified several factors that could explain the widespread phenomena of sex and recombination. One hypothesis is that host-parasite interactions favor sex and recombination because they favor the production of rare genotypes. A problem with many of the early models of this so-called Red Queen hypothesis is that several factors are acting together: directional selection, fluctuating epistasis, and drift. It is thus difficult to identify what exactly is selecting for sex in these models. Is one factor more important than the others or is it the synergistic action of these different factors that really matters? Here we focus on the analysis of a simple model with a single mechanism that might select for sex: fluctuating epistasis. We first analyze the evolution of sex and recombination when the temporal fluctuations are driven by the abiotic environment. We then analyze the evolution of sex and recombination in a two-species coevolutionary model, where directional selection is absent (allele frequencies remain fixed) and temporal variation in epistasis is induced by coevolution with the antagonist species. In both cases we contrast situations with weak and strong selection and derive the evolutionarily stable (ES) recombination rate. The ES recombination rate is most sensitive to the period of the cycles, which in turn depends on the strength of epistasis. In particular, more virulent parasites cause more rapid cycles and consequently increase the ES recombination rate of the host. Although the ES strategy is maximized at an intermediate period, some recombination is favored even when fluctuations are very slow. By contrast, the amplitude of the cycles has no effect on the ES level of sex and recombination, unless sex and recombination are costly, in which case higher-amplitude cycles allow the evolution of higher rates of sex and recombination. In the coevolutionary model, the amount of recombination in the interacting species also has

  19. Accelerator

    International Nuclear Information System (INIS)

    The invention claims equipment for stabilizing the position of the front covers of the accelerator chamber in cyclic accelerators which significantly increases accelerator reliability. For stabilizing, it uses hydraulic cushions placed between the electromagnet pole pieces and the front chamber covers. The top and the bottom cushions are hydraulically connected. The cushions are disconnected and removed from the hydraulic line using valves. (J.P.)

  20. Analyzing the Interdependence Between Some Certain Gene Loci by Epistasis Measures in Fitness Landscapes of Schemata

    Institute of Scientific and Technical Information of China (English)

    李建武; 李敏强

    2003-01-01

    GA-hardness and interdependence between genes in the chromosome are important questions in the study of genetic algorithms(GA). Traditional methods, which are used to measure the interaction between genes, can only reflect the extent of epistasis between all genes in the chromosome. Therefore, the definition of the fitness landscape of schemata is proposed in this paper, and epistasis measures on this landscape of schemata are used to analyze the degree of interdependence between some certain gene loci in study. Some information between these sites can be reflected by some characters of the fitness landscape of schemata which are composed of these fixed sites. The stronger the interaction between these sites, the larger the variation of the fitness of schemata whose fixed sites correspond to those sites in study, and the more rugged the fitness landscape of these schemata. According to the degree of interaction between these given gene loci, building blocks of GA can be analyzed and determined, and further genetic operators and the structure of GA can be designed and adjusted to improve the performance of GA. At last, a lot of experiments including NK-models are done, and results of empirical analysis show that this method is effective.

  1. Acceleration Measurement of Projectile High Velocity Penetrating Concrete Target and Acceleration Signal Analysis

    Institute of Scientific and Technical Information of China (English)

    Peng XU; Jing ZU; Jing-biao FAN

    2010-01-01

    A kind of novel on-boand memory acceleratian measure equipment, self-developed, had been employed in recent field test to obtain the acceleration of projectile penetrating many kinds of concrete target. At the same time, the aluminum foam with different density and pore-diameters had been utilized to protect cirruit modules. Fur-thermore, with the theoretical analysis, computer simulation and field test, the high frequency's impact on the tested acceleration of the projectile had been discussed; At last, the analysis on output signal tested the validity of test data.

  2. Accelerated Multiscale Analysis on the Earth's Surface

    Science.gov (United States)

    Gutting, Martin

    2014-05-01

    By the use of an underlying Runge sphere harmonic scaling functions and wavelets can be constructed on regular surfaces such as the surface of the Earth. They allow a space-frequency decomposition of geopotentials on the surface. Moreover, due to their localizing properties regional modeling or the improvement of a global model is possible. The acceleration of the convolution by the fast multipole method is possible for certain types of harmonic scaling functions and wavelets. The main idea of the fast multipole algorithm consists of a hierarchical decomposition of the computational domain into cubes and a kernel approximation for the more distant points. The kernel evaluation is performed directly only for points in neighboring cubes on the finest level. The contributions of the other points are transferred into a set of coefficients. The kernel approximation is applied on the coarsest possible level using translations of these coefficients. This reduces the numerical effort of the convolution for a prescribed accuracy of the kernel approximation. Multiscale methods are known to possess a tree algorithm that allows the computation of the lower frequency scales from a starting scale that contains the highest frequency parts of the signal. The application of the fast multipole method can accelerate the computation of this starting point as well as the tree algorithm itself. The presentation includes applications to gravitational field modeling.

  3. Analysis of accelerated motion in the theory of relativity

    Science.gov (United States)

    Jones, R. T.

    1976-01-01

    Conventional treatments of accelerated motion in the theory of relativity have led to certain difficulties of interpretation. Certain reversals in the apparent gravitational field of an accelerated body may be avoided by simpler analysis based on the use of restricted conformal transformations. In the conformal theory the velocity of light remains constant even for experimenters in accelerated motion. The problem considered is that of rectilinear motion with a variable velocity. The motion takes place along the x or x' axis of two coordinate systems.

  4. Rapid Electromagnetic Analysis of Entire Accelerator Structures

    CERN Document Server

    Cooke, Simon

    2005-01-01

    We present results of a new method for fast, accurate calculation, in 3-D, of the electromagnetic mode spectrum of long, tapered accelerator structures. Instead of discretizing the entire structure directly and solving a huge matrix eigenvalue problem, we use a new two-step technique that scales much better to long, multi-cavity structures. In the first step we compute a small number of eigenmodes of individual cavities, achieving 0.05% frequency accuracy using a new second-order finite-element code. In the second step we use these 3-D mode solutions as field basis functions to obtain a reduced matrix representation of Maxwell's equations for the complete structure. Solving the reduced system takes just a few minutes on a desktop PC even with more than 100 non-identical cavities, and gives the complete mode spectrum in the first few bands of the structure. By judicious choice of the basis modes, we retain 0.05% frequency accuracy for these global solutions, and can reconstruct the complete 3-D field of each m...

  5. Radiation Shielding Analysis of Electron Beam Accelerator Facility

    International Nuclear Information System (INIS)

    The objective of this technical report are to establish the radiation shielding technology of a high-energy electron accelerator to the facilities which utilize with electron beam. The technologies of electron beam irradiation(300 KeV -10 MeV) demand on the diverse areas of material processing, surface treatment, treatments on foods or food processing, improvement of metal properties, semiconductors, and ceramics, sterilization of medical goods and equipment, treatment and control of contamination and pollution, and so on. In order to acquire safety design for the protection of personnel from the radiations produced by electron beam accelerators, it is important to develop the radiation shielding analysis technology. The shielding analysis are carried out by which define source term, calculation modelling and computer calculations for 2 MeV and 10 MeV accelerators. And the shielding analysis for irradiation dump shield with 10 MeV accelerators are also performed by solving the complex 3-D geometry and long computer run time problem. The technology development of shielding analysis will be contributed to extend the further high energy accelerator development

  6. Schottky noise analysis in linear accelerators

    International Nuclear Information System (INIS)

    An application of Schottky noise analysis is theoretically presented for the diagnosis of intense beams in linacs. Induced currents by betatron/synchroton oscillations of particles as well as mismatched-envelope oscillations are calculated by applying different models. The induced currents are analytically Fourier-analyzed. Resulting power spectra show some stochastic peaks which reflect basic parameters of these oscillations. (orig.)

  7. Maternal-Zygotic Epistasis and the Evolution of Genetic Diseases

    Directory of Open Access Journals (Sweden)

    Nicholas K. Priest

    2010-01-01

    Full Text Available Many birth defects and genetic diseases are expressed in individuals that do not carry the disease causing alleles. Genetic diseases observed in offspring can be caused by gene expression in mothers and by interactions between gene expression in mothers and offspring. It is not clear whether the underlying pattern of gene expression (maternal versus offspring affects the incidence of genetic disease. Here we develop a 2-locus population genetic model with epistatic interactions between a maternal gene and a zygotic gene to address this question. We show that maternal effect genes that affect disease susceptibility in offspring persist longer and at higher frequencies in a population than offspring genes with the same effects. We find that specific forms of maternal-zygotic epistasis can maintain disease causing alleles at high frequencies over a range of plausible values. Our findings suggest that the strength and form of epistasis and the underlying pattern of gene expression may greatly influence the prevalence of human genetic diseases.

  8. Induced acceleration analysis of the hamstrings during standing in crouch

    NARCIS (Netherlands)

    Schrijver, Annemare; Stewart, Caroline; Postans, Neil; Roberts, Andrew

    2009-01-01

    The aim of this study was to use a simple 2D model to calculate the induced accelerations of the hamstring muscles during standing in different degrees of crouch. Comparison was made with previous experimental data and a sensitivity analysis performed.

  9. Diminishing-returns epistasis among random beneficial mutations in a multicellular fungus.

    Science.gov (United States)

    Schoustra, Sijmen; Hwang, Sungmin; Krug, Joachim; de Visser, J Arjan G M

    2016-08-31

    Adaptive evolution ultimately is fuelled by mutations generating novel genetic variation. Non-additivity of fitness effects of mutations (called epistasis) may affect the dynamics and repeatability of adaptation. However, understanding the importance and implications of epistasis is hampered by the observation of substantial variation in patterns of epistasis across empirical studies. Interestingly, some recent studies report increasingly smaller benefits of beneficial mutations once genotypes become better adapted (called diminishing-returns epistasis) in unicellular microbes and single genes. Here, we use Fisher's geometric model (FGM) to generate analytical predictions about the relationship between the effect size of mutations and the extent of epistasis. We then test these predictions using the multicellular fungus Aspergillus nidulans by generating a collection of 108 strains in either a poor or a rich nutrient environment that each carry a beneficial mutation and constructing pairwise combinations using sexual crosses. Our results support the predictions from FGM and indicate negative epistasis among beneficial mutations in both environments, which scale with mutational effect size. Hence, our findings show the importance of diminishing-returns epistasis among beneficial mutations also for a multicellular organism, and suggest that this pattern reflects a generic constraint operating at diverse levels of biological organization. PMID:27559062

  10. Accelerated FEM Analysis for Critical Engine Components

    Directory of Open Access Journals (Sweden)

    Leonardo FRIZZIERO

    2014-10-01

    Full Text Available This paper introduces a method to simplify a nonlinear problem in order to use linear finite element analysis. This approach improves calculation time by 2 orders of magnitude. It is then possible to optimize the geometry of the components even without supercomputers. In this paper the method is applied to a very critical component: the aluminium alloy piston of a modern common rail diesel engine. The method consists in the subdivision of the component, in this case the piston, in several volumes, that have approximately a constant temperature. These volumes are then assembled through congruence constraints. To each volume a proper material is then assigned. It is assumed that material behaviour depends on average temperature, load magnitude and load gradient. This assumption is valid since temperatures vary slowly when compared to pressure (load. In fact pressures propagate with the speed of sound. The method is validated by direct comparison with nonlinear simulation of the same component, the piston, taken as an example. In general, experimental tests have confirmed the cost-effectiveness of this approach.

  11. New accelerators for femtosecond beam pump-and-probe analysis

    Energy Technology Data Exchange (ETDEWEB)

    Uesaka, Mitsuru [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan)]. E-mail: uesaka@utnl.jp; Sakumi, Akira [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan); Hosokai, Tomonao [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan); Kinoshita, Kenichi [National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage, Chiba 263-8555 (Japan); Yamaoka, Nobuaki [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan); Zhidkov, Alexei [National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage, Chiba 263-8555 (Japan); Ohkubo, Takeru [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan); Ueda, Toru [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan); Muroya, Yusa [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan); Katsumura, Yosuke [Nuclear Engineering Research Laboratory, University of Tokyo, 2-22 Shirakata-Shirane, Tokai, Naka, Ibaraki 319-1188 (Japan); Iijima, Hokuto [Japan Atomic Energy Research Institute, 2-4 Shirane, Tokai, Naka, Ibaraki 319-1195 (Japan); Tomizawa, Hiromitsu [Japan Synchrotron Radiation Research InstituteI, 1-1-1 Kouto, Mikazuki-cho, Sayo-gun, Hyogo 679-5198 (Japan); Kumagai, Noritaka [Japan Synchrotron Radiation Research InstituteI, 1-1-1 Kouto, Mikazuki-cho, Sayo-gun, Hyogo 679-5198 (Japan)

    2005-12-15

    Femtosecond electron beams are novel tool for pump-probe analysis of condensed matter. Progress in developing femtosecond electron beams with the use of both conventional accelerators and laser-plasma accelerators is discussed. In conventional accelerators, the critical issue is timing jitter and drift of the linac-laser synchronization system. Sophisticated electronic devices are developed to reduce the jitter to 330 fs (rms); the precise control of temperature at several parts of the accelerator lessens the drift to 1 ps (rms). We also report on a full-optical X-ray and e-beam system based on the laser-plasma cathode by using a 12 TW 50 fs laser, which enables 40 MeV (at maximum), 40 fs (cal.), 100 pC and quasi-monochromatic single electron bunches. Since the synchronization is done by a passive optical beam-splitter, this system intrinsically has no jitter and drift. It could achieve tens of femtoseconds time-resolved analysis in the near future.

  12. Automatic Beam Path Analysis of Laser Wakefield Particle Acceleration Data

    Energy Technology Data Exchange (ETDEWEB)

    Rubel, Oliver; Geddes, Cameron G.R.; Cormier-Michel, Estelle; Wu, Kesheng; Prabhat,; Weber, Gunther H.; Ushizima, Daniela M.; Messmer, Peter; Hagen, Hans; Hamann, Bernd; Bethel, E. Wes

    2009-10-19

    Numerical simulations of laser wakefield particle accelerators play a key role in the understanding of the complex acceleration process and in the design of expensive experimental facilities. As the size and complexity of simulation output grows, an increasingly acute challenge is the practical need for computational techniques that aid in scientific knowledge discovery. To that end, we present a set of data-understanding algorithms that work in concert in a pipeline fashion to automatically locate and analyze high energy particle bunches undergoing acceleration in very large simulation datasets. These techniques work cooperatively by first identifying features of interest in individual timesteps, then integrating features across timesteps, and based on the information derived perform analysis of temporally dynamic features. This combination of techniques supports accurate detection of particle beams enabling a deeper level of scientific understanding of physical phenomena than hasbeen possible before. By combining efficient data analysis algorithms and state-of-the-art data management we enable high-performance analysis of extremely large particle datasets in 3D. We demonstrate the usefulness of our methods for a variety of 2D and 3D datasets and discuss the performance of our analysis pipeline.

  13. Automatic beam path analysis of laser wakefield particle acceleration data

    Energy Technology Data Exchange (ETDEWEB)

    Ruebel, Oliver; Wu, Kesheng; Prabhat; Weber, Gunther H; Ushizima, Daniela M; Hamann, Bernd; Bethel, Wes [Computational Research Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720 (United States); Geddes, Cameron G R; Cormier-Michel, Estelle [LOASIS program of Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720 (United States); Messmer, Peter [Tech-X Corporation, 5621 Arapahoe Avenue Suite A, Boulder, CO 80303 (United States); Hagen, Hans [International Research Training Group ' Visualization of Large and Unstructured Data Sets-Applications in Geospatial Planning, Modeling, and Engineering' , Technische Universitaet Kaiserslautern, Erwin-Schroedinger-Strasse, D-67653 Kaiserslautern (Germany)], E-mail: oruebel@lbl.gov

    2009-01-01

    Numerical simulations of laser wakefield particle accelerators play a key role in the understanding of the complex acceleration process and in the design of expensive experimental facilities. As the size and complexity of simulation output grows, an increasingly acute challenge is the practical need for computational techniques that aid in scientific knowledge discovery. To that end, we present a set of data-understanding algorithms that work in concert in a pipeline fashion to automatically locate and analyze high-energy particle bunches undergoing acceleration in very large simulation datasets. These techniques work cooperatively by first identifying features of interest in individual timesteps, then integrating features across timesteps, and based on the information-derived perform analysis of temporally dynamic features. This combination of techniques supports accurate detection of particle beams enabling a deeper level of scientific understanding of physical phenomena than has been possible before. By combining efficient data analysis algorithms and state-of-the-art data management we enable high-performance analysis of extremely large particle datasets in 3D. We demonstrate the usefulness of our methods for a variety of 2D and 3D datasets and discuss the performance of our analysis pipeline.

  14. Model independent analysis on the slowing down of cosmic acceleration

    CERN Document Server

    Zhang, Ming-Jian

    2016-01-01

    Possible slowing down of cosmic acceleration has attracted more and more attention. However, most analysis in previous work were commonly imposed in some parametrization models. In the present paper, we investigate this subject using the the Gaussian processes (GP), providing a model-independent analysis. We carry out the reconstruction by abundant data including luminosity distance from Union2, Union2.1 compilation and gamma-ray burst, and Hubble parameter from cosmic chronometer and baryon acoustic oscillation peaks. The GP reconstructions suggest that no slowing down of cosmic acceleration is approved within 95\\% C.L. from current observational data. We also test the influence of spatial curvature and Hubble constant, finding that spatial curvature does not present significant impact on the reconstructions. However, Hubble constant strongly influence the reconstructions especially at low redshift. In order to reveal the reason of inconsistence between our reconstruction and previous parametrization constra...

  15. Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity

    OpenAIRE

    Rishika; Hu, Ting; Moore, Jason H.; Gilbert-Diamond, Diane

    2015-01-01

    Background Recent findings have reemphasized the importance of epistasis, or gene-gene interactions, as a contributing factor to the unexplained heritability of obesity. Network-based methods such as statistical epistasis networks (SEN), present an intuitive framework to address the computational challenge of studying pairwise interactions between thousands of genetic variants. In this study, we aimed to analyze pairwise interactions that are associated with Body Mass Index (BMI) between SNPs...

  16. Accelerated Gibbs Sampling for Infinite Sparse Factor Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Andrzejewski, D M

    2011-09-12

    The Indian Buffet Process (IBP) gives a probabilistic model of sparse binary matrices with an unbounded number of columns. This construct can be used, for example, to model a fixed numer of observed data points (rows) associated with an unknown number of latent features (columns). Markov Chain Monte Carlo (MCMC) methods are often used for IBP inference, and in this technical note, we provide a detailed review of the derivations of collapsed and accelerated Gibbs samplers for the linear-Gaussian infinite latent feature model. We also discuss and explain update equations for hyperparameter resampling in a 'full Bayesian' treatment and present a novel slice sampler capable of extending the accelerated Gibbs sampler to the case of infinite sparse factor analysis by allowing the use of real-valued latent features.

  17. Consistency analysis of accelerated degradation mechanism based on gray theory

    Institute of Scientific and Technical Information of China (English)

    Yunxia Chen; Hongxia Chen; Zhou Yang; Rui Kang; Yi Yang

    2014-01-01

    A fundamental premise of an accelerated testing is that the failure mechanism under elevated and normal stress levels should remain the same. Thus, verification of the consistency of failure mechanisms is essential during an accelerated testing. A new consistency analysis method based on the gray theory is pro-posed for complex products. First of al , existing consistency ana-lysis methods are reviewed with a focus on the comparison of the differences among them. Then, the proposed consistency ana-lysis method is introduced. Two effective gray prediction models, gray dynamic model and new information and equal dimensional (NIED) model, are adapted in the proposed method. The process to determine the dimension of NIED model is also discussed, and a decision rule is expanded. Based on that, the procedure of ap-plying the new consistent analysis method is developed. Final y, a case study of the consistency analysis of a reliability enhancement testing is conducted to demonstrate and validate the proposed method.

  18. Acceleration of multivariate analysis techniques in TMVA using GPUs

    CERN Document Server

    Hoecker, A; Therhaag, J; Washbrook, A

    2012-01-01

    A feasibility study into the acceleration of multivariate analysis techniques using Graphics Processing Units (GPUs) will be presented. The MLP-based Artificial Neural Network method contained in the TMVA framework has been chosen as a focus for investigation. It was found that the network training time on a GPU was lower than for CPU execution as the complexity of the network was increased. In addition, multiple neural networks can be trained simultaneously on a GPU within the same time taken for single network training on a CPU. This could be potentially leveraged to provide a qualitative performance gain in data classification.

  19. Multidimensional epistasis and the transitory advantage of sex.

    Directory of Open Access Journals (Sweden)

    Stefan Nowak

    2014-09-01

    Full Text Available Identifying and quantifying the benefits of sex and recombination is a long-standing problem in evolutionary theory. In particular, contradictory claims have been made about the existence of a benefit of recombination on high dimensional fitness landscapes in the presence of sign epistasis. Here we present a comparative numerical study of sexual and asexual evolutionary dynamics of haploids on tunably rugged model landscapes under strong selection, paying special attention to the temporal development of the evolutionary advantage of recombination and the link between population diversity and the rate of adaptation. We show that the adaptive advantage of recombination on static rugged landscapes is strictly transitory. At early times, an advantage of recombination arises through the possibility to combine individually occurring beneficial mutations, but this effect is reversed at longer times by the much more efficient trapping of recombining populations at local fitness peaks. These findings are explained by means of well-established results for a setup with only two loci. In accordance with the Red Queen hypothesis the transitory advantage can be prolonged indefinitely in fluctuating environments, and it is maximal when the environment fluctuates on the same time scale on which trapping at local optima typically occurs.

  20. An evolutionary perspective on epistasis and the missing heritability.

    Directory of Open Access Journals (Sweden)

    Gibran Hemani

    2013-02-01

    Full Text Available The relative importance between additive and non-additive genetic variance has been widely argued in quantitative genetics. By approaching this question from an evolutionary perspective we show that, while additive variance can be maintained under selection at a low level for some patterns of epistasis, the majority of the genetic variance that will persist is actually non-additive. We propose that one reason that the problem of the "missing heritability" arises is because the additive genetic variation that is estimated to be contributing to the variance of a trait will most likely be an artefact of the non-additive variance that can be maintained over evolutionary time. In addition, it can be shown that even a small reduction in linkage disequilibrium between causal variants and observed SNPs rapidly erodes estimates of epistatic variance, leading to an inflation in the perceived importance of additive effects. We demonstrate that the perception of independent additive effects comprising the majority of the genetic architecture of complex traits is biased upwards and that the search for causal variants in complex traits under selection is potentially underpowered by parameterising for additive effects alone. Given dense SNP panels the detection of causal variants through genome-wide association studies may be improved by searching for epistatic effects explicitly.

  1. Epistasis in intra- and inter-gene pool crosses of the common bean.

    Science.gov (United States)

    Borel, J C; Ramalho, M A P; Abreu, A F B

    2016-02-26

    Epistasis has been shown to have an important role in the genetic control of several quantitative traits in the common bean. This study aimed to investigate the occurrence of epistasis in intra- and inter-pool gene crosses of the common bean. Four elite lines adapted to Brazilian conditions were used as parents, two from the Andean gene pool (ESAL 686; BRS Radiante) and two from the Mesoamerican gene pool (BRSMG Majestoso; BRS Valente). Four F2 populations were obtained: "A" (ESAL 686 x BRS Radiante), "B" (BRSMG Majestoso x BRS Valente), "C" (BRS Radiante x BRSMG Majestoso), and "D" (BRS Valente x ESAL 686). A random sample of F2 plants from each population was backcrossed to parents and F1 individuals, according to the triple test cross. Three types of progenies from each population were evaluated in contiguous trials. Seed yield and 100-seed weight were evaluated. Dominance genetic variance was predominant in most cases. However, the estimates of genetic variance may be biased by the occurrence of linkage disequilibrium and epistasis. Epistasis was detected for both traits; however, the occurrence differed among the populations and between the two traits. The results of this study reinforce the hypothesis that epistasis is present in the genetic control of traits in the common bean and suggest that the phenomenon is more frequent in inter-gene pool crosses than in intra-gene pool crosses.

  2. Measuring epistasis in fitness landscapes: The correlation of fitness effects of mutations.

    Science.gov (United States)

    Ferretti, Luca; Schmiegelt, Benjamin; Weinreich, Daniel; Yamauchi, Atsushi; Kobayashi, Yutaka; Tajima, Fumio; Achaz, Guillaume

    2016-05-01

    Genotypic fitness landscapes are constructed by assessing the fitness of all possible combinations of a given number of mutations. In the last years, several experimental fitness landscapes have been completely resolved. As fitness landscapes are high-dimensional, simple measures of their structure are used as statistics in empirical applications. Epistasis is one of the most relevant features of fitness landscapes. Here we propose a new natural measure of the amount of epistasis based on the correlation of fitness effects of mutations. This measure has a natural interpretation, captures well the interaction between mutations and can be obtained analytically for most landscape models. We discuss how this measure is related to previous measures of epistasis (number of peaks, roughness/slope, fraction of sign epistasis, Fourier-Walsh spectrum) and how it can be easily extended to landscapes with missing data or with fitness ranks only. Furthermore, the dependence of the correlation of fitness effects on mutational distance contains interesting information about the patterns of epistasis. This dependence can be used to uncover the amount and nature of epistatic interactions in a landscape or to discriminate between different landscape models.

  3. Bridging the Gap between Statistical and Biological Epistasis in Alzheimer’s Disease

    Directory of Open Access Journals (Sweden)

    Mark T. W. Ebbert

    2015-01-01

    Full Text Available Alzheimer’s disease affects millions of people worldwide and incidence is expected to rise as the population ages, but no effective therapies exist despite decades of research and more than 20 known disease markers. Research has shown that Alzheimer’s disease’s missing heritability remains extensive with an estimated 25% of phenotypic variance unexplained by known variants. The missing heritability may be explained by missing variants or by epistasis. Researchers often focus on individual loci rather than epistatic interactions, which is likely an oversimplification of the underlying biology since most phenotypes are affected by multiple genes. Focusing research efforts on epistasis will be critical to resolving Alzheimer’s disease etiology, and a major key to identifying and properly interpreting key epistatic interactions will be bridging the gap between statistical and biological epistasis. This review covers the current state of epistasis research in Alzheimer’s disease and how researchers can bridge the gap between statistical and biological epistasis to help resolve Alzheimer’s disease etiology.

  4. The development of a standard format for accelerator data analysis

    International Nuclear Information System (INIS)

    The purpose of specifying a standard file format is to facilitate the analysis of data sampled by accelerator beam diagnostic instrumentation. The format's design needs to be flexible enough to allow storage of information from disparate diagnostic devices placed in the beam line. The goal of this project was to establish a standard file layout and syntax that can be generated and ''understood'' by a large set of applications running on the control and data-analysis computers at LAMPF as well as applications on personal computers. Only one file-parsing algorithm is needed for all computing systems. It is a straightforward process to code a parser for both the control computer and pc's once a consensus on the file syntax has been established. This paper describes the file format and the methods used to integrate the format into existing diagnostic and control software

  5. Desloratadine analysis: as a pharmaceutical preparation and after accelerating ageing

    Directory of Open Access Journals (Sweden)

    Bober Katarzyna

    2015-09-01

    Full Text Available Desloratadine is a biologically active compound that is not described in the Polish Pharmacopoeia IX, hence, its study is particular important. The aim of this work was to establish a procedure for desloratadine analysis by way of HPTLC in combination with densitometry, so as to be able to ascertain its presence and degree of presence within pharmaceutical preparations. In our work, a mixture of ethyl acetate, n-butanol, ammonia and methanol was used as the mobile phase. Moreover, HPTLC plates precoated with silica gel 60F254 were also employed. The proposed method was tested and subsequently validated. Spectrodensitometric analysis was then performed to determine the optimal wavelength for the quantitative determination (λ=276 nm, and following this, a quantitative analysis of desloratadine within certain pharmaceutical preparations was performed. Our research also took into consideration an analysis of the products of desloratadine decomposition that come about as a result of the accelerated aging of its solutions. The employed procedure for accelerating the aging of such desloratadine solutions consisted of heating these at 40℃ and then irradiating the solution surfaces with UV light. The changing color of these solutions after 2 hours of exposure served to indicate that degradation had occurred. Of note: as a result of irradiation with UV light, desloratadine content was seen to decrease with time, declining to almost zero after 30 hours. However, heating a solution of desloratadine alone did not induce a change in its content. Solutions of desloratadine that had previously undergone irradiation and heating were also analyzed to ascertain whether new substances were present. For this purpose, the GC-MS process was employed. As a result of this procedure, the spectrum of the solution after aging showed the presence of several new peaks that displayed retention several times larger and smaller than the normal desloratadine peak.

  6. Review: High-performance computing to detect epistasis in genome scale data sets.

    Science.gov (United States)

    Upton, Alex; Trelles, Oswaldo; Cornejo-García, José Antonio; Perkins, James Richard

    2016-05-01

    It is becoming clear that most human diseases have a complex etiology that cannot be explained by single nucleotide polymorphisms (SNPs) or simple additive combinations; the general consensus is that they are caused by combinations of multiple genetic variations. The limited success of some genome-wide association studies is partly a result of this focus on single genetic markers. A more promising approach is to take into account epistasis, by considering the association of multiple SNP interactions with disease. However, as genomic data continues to grow in resolution, and genome and exome sequencing become more established, the number of combinations of variants to consider increases rapidly. Two potential solutions should be considered: the use of high-performance computing, which allows us to consider a larger number of variables, and heuristics to make the solution more tractable, essential in the case of genome sequencing. In this review, we look at different computational methods to analyse epistatic interactions within disease-related genetic data sets created by microarray technology. We also review efforts to use epistatic analysis results to produce biomarkers for diagnostic tests and give our views on future directions in this field in light of advances in sequencing technology and variants in non-coding regions.

  7. Direct and indirect genetic effects of sex-specific mitonuclear epistasis on reproductive ageing

    DEFF Research Database (Denmark)

    Immonen, Elina; Collet, Marie; Goenaga, Julieta;

    2016-01-01

    Mitochondria are involved in ageing and their function requires coordinated action of both mitochondrial and nuclear genes. Epistasis between the two genomes can influence lifespan but whether this also holds for reproductive senescence is unclear. Maternal inheritance of mitochondria predicts sex...... to slower senescence relative to novel mitonuclear combinations. We found no evidence for mitonuclear coadaptation in males. Mitonuclear epistasis not only affected age-specific ejaculate weight, but also influenced male age-dependent indirect effects on traits expressed by their female partners (fecundity...... beetle Callosobruchus maculatus, using introgression lines harbouring distinct mitonuclear genotypes. Our results reveal both direct and indirect sex-specific effects of mitonuclear epistasis on reproductive ageing. Females harbouring coadapted mitonuclear genotypes showed higher lifetime fecundity due...

  8. Replication and explorations of high-order epistasis using a large advanced intercross line pedigree.

    Directory of Open Access Journals (Sweden)

    Mats Pettersson

    2011-07-01

    Full Text Available Dissection of the genetic architecture of complex traits persists as a major challenge in biology; despite considerable efforts, much remains unclear including the role and importance of genetic interactions. This study provides empirical evidence for a strong and persistent contribution of both second- and third-order epistatic interactions to long-term selection response for body weight in two divergently selected chicken lines. We earlier reported a network of interacting loci with large effects on body weight in an F(2 intercross between these high- and low-body weight lines. Here, most pair-wise interactions in the network are replicated in an independent eight-generation advanced intercross line (AIL. The original report showed an important contribution of capacitating epistasis to growth, meaning that the genotype at a hub in the network releases the effects of one or several peripheral loci. After fine-mapping of the loci in the AIL, we show that these interactions were persistent over time. The replication of five of six originally reported epistatic loci, as well as the capacitating epistasis, provides strong empirical evidence that the originally observed epistasis is of biological importance and is a contributor in the genetic architecture of this population. The stability of genetic interaction mechanisms over time indicates a non-transient role of epistasis on phenotypic change. Third-order epistasis was for the first time examined in this study and was shown to make an important contribution to growth, which suggests that the genetic architecture of growth is more complex than can be explained by two-locus interactions only. Our results illustrate the importance of designing studies that facilitate exploration of epistasis in populations for obtaining a comprehensive understanding of the genetics underlying a complex trait.

  9. GPU-ACCELERATED FEM SOLVER FOR THREE DIMENSIONAL ELECTROMAGNETIC ANALYSIS

    Institute of Scientific and Technical Information of China (English)

    Tian Jin; Gong Li; Shi Xiaowei; Le Xu

    2011-01-01

    A new Graphics Processing Unit (GPU) parallelization strategy is proposed to accelerate sparse finite element computation for three dimensional electromagnetic analysis.The parallelization strategy is employed based on a new compression format called sliced ELL Four (sliced ELL-F).The sliced ELL-F format-based parallelization strategy is designed for hastening many addition,dot product,and Sparse Matrix Vector Product (SMVP) operations in the Conjugate Gradient Norm (CGN) calculation of finite element equations.The new implementation of SMVP on GPUs is evaluated.The proposed strategy executed on a GPU can efficiently solve sparse finite element equations,especially when the equations are huge sparse (size of most rows in a coefficient matrix is less than 8).Numerical results show the sliced ELL-F format-based parallelization strategy can reach significant speedups compared to Compressed Sparse Row (CSR) format.

  10. Numerical analysis of flow fields generated by accelerating flames

    Energy Technology Data Exchange (ETDEWEB)

    Kurylo, J.

    1977-12-01

    Presented here is a numerical technique for the analysis of non-steady flow fields generated by accelerating flames in gaseous media. Of particular interest in the study is the evaluation of the non-steady effects on the flow field and the possible transition of the combustion process to detonation caused by an abrupt change in the burning speed of an initially steady flame propagating in an unconfined combustible gas mixture. Optically recorded observations of accelerating flames established that the flow field can be considered to consist of non-steady flow fields associated with an assembly of interacting shock waves, contact discontinuities, deflagration and detonation fronts. In the analysis, these flow fields are treated as spatially one-dimensional, the influence of transport phenomena is considered to be negligible, and unburned and burned substances are assumed to behave as perfect gases with constant, but different, specific heats. The basis of the numerical technique is an explicit, two step, second order accurate, finite difference scheme employed to integrate the flow field equations expressed in divergence form. The burning speed, governing the motion of the deflagration, is expressed in the form of a power law dependence on pressure and temperature immediately ahead of its front. The steady wave solution is obtained by the vector polar interaction technique, that is, by determining the point of intersection between the loci of end states in the plane of the two interaction invariants, pressure and particle velocity. The technique is illustrated by a numerical example in which a steady flame experiences an abrupt change in its burning speed. Solutions correspond either to the eventual reestablishment of a steady state flow field commensurate with the burning speed or to the transition to detonation. The results are in satisfactory agreement with experimental observations.

  11. Epistasis and Maternal Effect in Resistance to Puccinia coronata Cda.f.sp.avenae Eriks in Oats (Avena sp.)

    Institute of Scientific and Technical Information of China (English)

    Bnejdi F; Hammami I; Allagui M B; Saadoun M; el Gazzah M

    2010-01-01

    The objective of this paper was to investigate the mode of heredity for resistance in oats (Arena sp.) to crown rust caused by Puccinia coronata Cda.f.sp.avenae Eriks.Eight generations of 2 crosses were used to estimate genetic effects and narrow-sense heritability (NSH).Separate generation means analysis (GMA) indicated a complex gene action controlling this trait with additive,dominance,epistatic and maternal effects (ME).The genetic model which assumed no epistasis and no ME did not accurately describe the resistance to P.coronata.In both crosses,the digenic epistatic model with ME epistatic components were negative in most cases,suggesting that gene effects contributed more to the resistance than to the susceptibility.The estimated values of NSH were 15-99% depending upon the cross and isolates.The results indicated that appropriate choice of maternal parent and recurrent selection would increase resistance to crown rust in oats.

  12. Transition of Iodine Analysis to Accelerator Mass Spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Watrous, Matthew George [Idaho National Lab. (INL), Idaho Falls, ID (United States); Adamic, Mary Louise [Idaho National Lab. (INL), Idaho Falls, ID (United States); Olson, John Eric [Idaho National Lab. (INL), Idaho Falls, ID (United States); Baeck, D. L. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Fox, R. V. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Hahn, P. A. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Jenson, D. D. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Lister, T. E. [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-09-01

    The goal of the project, New Paradigms for Isotope Ratio Mass Spectrometry: Raising the Scientific Profile and Improved Performance for Accelerator Mass Spectrometry (AMS) and Thermal Ionization Mass Spectrometry (TIMS), is to ensure that the ongoing isotope ratio determination capability within the U.S. Department of Energy complex is the world’s best for application to nonproliferation. This report spells out the progress of Task 4, Transition of TIMS to AMS for Iodine Analysis, of the larger project. The subtasks under Task 4 and the accomplishments throughout the three year project life cycle are presented in this report. Progress was made in optimization of chemical extraction, determination of a detection limit for 127Iodine, production of standard materials for AMS analysis quality assurance, facilitation of knowledge exchange with respect to analyzing iodine on an AMS, cross comparison with a world-leading AMS laboratory, supercritical fluid extraction of iodine for AMS analysis and electrodeposition of seawater as a direct method of preparation for iodine analysis by AMS--all with the goal of minimizing the time required to stand up an AMS capability for iodine analysis of exposed air filters at INL. An effective extraction method has been developed and demonstrated for iodine analysis of exposed air filters. Innovative techniques to accomplish the cathode preparation for AMS analysis were developed and demonstrated and published. The known gap of a lack of available materials for reference standards in the analysis of iodine by AMS was filled by the preparation of homogenous materials that were calibrated against NIST materials. A minimum limit on the amount of abundant isotope in a sample was determined for AMS analysis. The knowledge exchange occurred with fantastic success. Scientists engaged the international AMS community at conferences, as well as in their laboratories for collaborative work. The supercritical fluid extraction work has positive

  13. Transition of Iodine Analysis to Accelerator Mass Spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Watrous, Matthew George [Idaho National Lab. (INL), Idaho Falls, ID (United States); Adamic, Mary Louise [Idaho National Lab. (INL), Idaho Falls, ID (United States); Olson, John Eric [Idaho National Lab. (INL), Idaho Falls, ID (United States); Baeck, D. L. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Fox, R. V. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Hahn, P. A. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Jenson, D. D. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Lister, T. E. [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-09-01

    The goal of the project, New Paradigms for Isotope Ratio Mass Spectrometry: Raising the Scientific Profile and Improved Performance for Accelerator Mass Spectrometry (AMS) and Thermal Ionization Mass Spectrometry (TIMS), is to ensure that the ongoing isotope ratio determination capability within the U.S. Department of Energy complex is the world’s best for application to nonproliferation. This report spells out the progress of Task 4, Transition of TIMS to AMS for Iodine Analysis, of the larger project. The subtasks under Task 4 and the accomplishments throughout the three year project life cycle are presented in this report. Progress was made in optimization of chemical extraction, determination of a detection limit for 127Iodine, production of standard materials for AMS analysis quality assurance, facilitation of knowledge exchange with respect to analyzing iodine on an AMS, cross comparison with a world leading AMS laboratory, supercritical fluid extraction of iodine for AMS analysis and electrodeposition of seawater as a direct method of preparation for iodine analysis by AMS. All with the goal of minimizing the time required to stand up an AMS capability for iodine analysis of exposed air filters at INL. An effective extraction method has been developed and demonstrated for iodine analysis of exposed air filters. Innovative techniques to accomplish the cathode preparation for AMS analysis were developed and demonstrated and published. The known gap of a lack of available materials for reference standards in the analysis of iodine by AMS was filled by the preparation of homogenous materials that were calibrated against NIST materials. A minimum limit on the amount of abundant isotope in a sample was determined for AMS analysis. The knowledge exchange occurred with fantastic success. Scientists engaged the international AMS community at conferences, as well as in their laboratories for collaborative work. The supercritical fluid extraction work has positive

  14. Statistical analysis of accelerated temperature aging of semiconductor devices

    Science.gov (United States)

    Johnson, W. A.; Milles, M. F.

    1981-05-01

    A number of semiconductor devices taken from a distribution were operated at several elevated temperatures to induce failure in all devices within a reasonable time. Assuming general characteristics of the device failure probability density function (pdf) and its temperature dependence, the expected cumulative failure function (cff) for devices in normal operation were estimated based on statistical inference, taking the average probability of a random device (from the same distribution but operated at a normal temperature) failing as a function of time. A review of the mathematical formalism employed in semiconductor reliability discussions is included. Three failure pdf's at particular usefulness to this analysis--exponential, normal, and lognormal - are discussed. The cff, at times orders of magnitude loss then, at times comparable to the desired system useful, life (*10 to the 4th power to 10 to the 5th power hr) is considered. A review of accelerated temperature aging is presented, and the assumption concerning the general characteristics of the failure pdf, which are fundamental to this analysis, are emphasized.

  15. Accelerated Sensitivity Analysis in High-Dimensional Stochastic Reaction Networks

    Science.gov (United States)

    Arampatzis, Georgios; Katsoulakis, Markos A.; Pantazis, Yannis

    2015-01-01

    Existing sensitivity analysis approaches are not able to handle efficiently stochastic reaction networks with a large number of parameters and species, which are typical in the modeling and simulation of complex biochemical phenomena. In this paper, a two-step strategy for parametric sensitivity analysis for such systems is proposed, exploiting advantages and synergies between two recently proposed sensitivity analysis methodologies for stochastic dynamics. The first method performs sensitivity analysis of the stochastic dynamics by means of the Fisher Information Matrix on the underlying distribution of the trajectories; the second method is a reduced-variance, finite-difference, gradient-type sensitivity approach relying on stochastic coupling techniques for variance reduction. Here we demonstrate that these two methods can be combined and deployed together by means of a new sensitivity bound which incorporates the variance of the quantity of interest as well as the Fisher Information Matrix estimated from the first method. The first step of the proposed strategy labels sensitivities using the bound and screens out the insensitive parameters in a controlled manner. In the second step of the proposed strategy, a finite-difference method is applied only for the sensitivity estimation of the (potentially) sensitive parameters that have not been screened out in the first step. Results on an epidermal growth factor network with fifty parameters and on a protein homeostasis with eighty parameters demonstrate that the proposed strategy is able to quickly discover and discard the insensitive parameters and in the remaining potentially sensitive parameters it accurately estimates the sensitivities. The new sensitivity strategy can be several times faster than current state-of-the-art approaches that test all parameters, especially in “sloppy” systems. In particular, the computational acceleration is quantified by the ratio between the total number of parameters over

  16. Transient analysis of a coupled accelerator and decelerator system

    International Nuclear Information System (INIS)

    For an energy-efficient accelerator system to be used for a free-electron laser, the stability of an energy-recovery system utilizing a bridge coupler placed between the accelerator and the decelerator is studied numerically. Energy is recovered by recirculating the accelerated electron beam through the decelerator; the recovered energy is then transported through the bridge coupler to the accelerator. The calculation shows that a large transient voltage oscillation is induced into the system. This transient oscillation can be reduced significantly by slowly applying both the electron-beam current and the klystron power at the beginning. Two types of instabilities are predicted according to the scraping of the electron beam between the accelerator and the decelerator. When the energy spectrum of the electron beam is scraped at the high end, the system induces an oscillation. However, when the low-energy end is scraped the electron recirculation may stop unless the klystron power is boosted by a feedback system

  17. Discovering epistasis in large scale genetic association studies by exploiting graphics cards

    Directory of Open Access Journals (Sweden)

    Gary K Chen

    2013-12-01

    Full Text Available Despite the enormous investments made in collecting DNA samples and generating germline variation data across thousands of individuals in modern genome wide association studies (GWAS, progress has been frustratingly slow in explaining much of the heritability in common disease. Today’s paradigm of testing independent hypotheses on each SNP marker is unlikely to adequately reflect the complex biological processes in disease risk. Alternatively, modeling risk as an ensemble of SNPs that act in concert in a pathway, and/or interact non-additively on log risk for example, may be a more sensible way to approach gene mapping in modern studies. Implementing such analyses genome-wide can quickly become intractable due to the fact that even modest size SNP panels on modern genotype arrays (500k markers pose a combinatorial nightmare, require tens of billions of models to be tested for evidence of interaction. In this article, we provide an in-depth analysis of programs that have been developed to explicitly overcome these enormous computational barriers through the use of processors on graphics cards known as Graphics Processing Units (GPU. We include tutorials on GPU technology, which will convey why they are growing in appeal with today’s numerical scientists. One obvious advantage is the impressive density of microprocessor cores that are available on only a single GPU. Whereas high end servers feature up to 24 Intel or AMD CPU cores, the latest GPU offerings from nVidia feature over 2,600 cores. Each compute node may be outfitted with up to 4 GPU devices. Success on GPUs varies across problems. However epistasis screens fare well due to the high degree of parallelism exposed in these problems. Papers that we review routinely report GPU speedups of over two orders of magnitude (>100x over standard CPU implementations.

  18. Installation of the Ion Accelerator for the Surface Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Kwon, Hyeok-Jung; Kim, Han-Sung; Chung, Bo-Hyun; Ahn, Tae-Sung; Kim, Dae-Il; Kim, Cho-Rong; Cho, Yong-Sub [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2015-10-15

    In this paper, an introduction to the accelerator, an installation status at KOMAC and the operation plan of the accelerator are discussed. A pelletron, which has been used over 25 years at KIGAM, is moved and installed at KOMAC in order to supply a qualified service to ion beam users. The system will be installed in September and component tests will be carried. The operation of the system starts in 2016 after it gets operation license from Nuclear Safety and Security Commission. Korea Multi-purpose Accelerator Complex (KOMAC) is operating several ion beam accelerators to provide various ion beams to users. Those are a 100 MeV proton linear accelerator, a 220 keV ion implanter for gaseous ion beams, a 150 keV metal ion implanter and a 20 keV high-current ion implanter. All of those are the machine for user service and it is important to qualify the results of the irradiation conditions for user service. For this reason, an electrostatic tandem accelerator, which has been operating over 25 years at Korea Institute of Geoscience and Mineral Resources (KIGAM), is moved to KOMAC in order to supply the qualified and quantified data on the irradiation species.

  19. Feature-based Analysis of Plasma-based Particle Acceleration Data

    Energy Technology Data Exchange (ETDEWEB)

    Ruebel, Oliver; Geddes, Cameron G.R.; Chen, Min; Cormier-Michel, Estelle; Bethel, E. Wes

    2013-07-05

    Plasma-based particle accelerators can produce and sustain thousands of times stronger acceleration fields than conventional particle accelerators, providing a potential solution to the problem of the growing size and cost of conventional particle accelerators. To facilitate scientific knowledge discovery from the ever growing collections of accelerator simulation data generated by accelerator physicists to investigate next-generation plasma-based particle accelerator designs, we describe a novel approach for automatic detection and classification of particle beams and beam substructures due to temporal differences in the acceleration process, here called acceleration features. The automatic feature detection in combination with a novel visualization tool for fast, intuitive, query-based exploration of acceleration features enables an effective top-down data exploration process, starting from a high-level, feature-based view down to the level of individual particles. We describe the application of our analysis in practice to analyze simulations of single pulse and dual and triple colliding pulse accelerator designs, and to study the formation and evolution of particle beams, to compare substructures of a beam and to investigate transverse particle loss.

  20. The Integration of Epistasis Network and Functional Interactions in a GWAS Implicates RXR Pathway Genes in the Immune Response to Smallpox Vaccine

    Science.gov (United States)

    McKinney, Brett A.; Lareau, Caleb; Oberg, Ann L.; Kennedy, Richard B.; Ovsyannikova, Inna G.; Poland, Gregory A.

    2016-01-01

    Although many diseases and traits show large heritability, few genetic variants have been found to strongly separate phenotype groups by genotype. Complex regulatory networks of variants and expression of multiple genes lead to small individual-variant effects and difficulty replicating the effect of any single variant in an affected pathway. Interaction network modeling of GWAS identifies effects ignored by univariate models, but population differences may still cause specific genes to not replicate. Integrative network models may help detect indirect effects of variants in the underlying biological pathway. In this study, we used gene-level functional interaction information from the Integrative Multi-species Prediction (IMP) tool to reveal important genes associated with a complex phenotype through evidence from epistasis networks and pathway enrichment. We test this method for augmenting variant-based network analyses with functional interactions by applying it to a smallpox vaccine immune response GWAS. The integrative analysis spotlights the role of genes related to retinoid X receptor alpha (RXRA), which has been implicated in a previous epistasis network analysis of smallpox vaccine. PMID:27513748

  1. Trace element analysis in silicon by accelerator SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Ender, R.M.; Suter, M. [Eidgenoessische Technische Hochschule, Zurich (Switzerland); Doebeli, M.; Synal, H.A. [Paul Scherrer Inst. (PSI), Villigen (Switzerland)

    1997-09-01

    The accelerator SIMS technique has been applied to Si samples implanted with different elements. It has been shown that concentrations of several trace elements can be analysed down to about 1 ppb in depth profiling mode. (author) 2 figs., 1 ref.

  2. Cuckoo search epistasis: a new method for exploring significant genetic interactions

    OpenAIRE

    Aflakparast, M; H. Salimi; Gerami, A; Dubé, M-P; Visweswaran, S.; Masoudi-Nejad, A

    2014-01-01

    The advent of high-throughput sequencing technology has resulted in the ability to measure millions of single-nucleotide polymorphisms (SNPs) from thousands of individuals. Although these high-dimensional data have paved the way for better understanding of the genetic architecture of common diseases, they have also given rise to challenges in developing computational methods for learning epistatic relationships among genetic markers. We propose a new method, named cuckoo search epistasis (CSE...

  3. STATISTICAL EPISTASIS NETWORKS REDUCE THE COMPUTATIONAL COMPLEXITY OF SEARCHING THREE-LOCUS GENETIC MODELS

    OpenAIRE

    Hu, Ting; Andrew, Angeline S; KARAGAS, MARGARET R.; Moore, Jason H.

    2013-01-01

    The rapid development of sequencing technologies makes thousands to millions of genetic attributes available for testing associations with various biological traits. Searching this enormous high-dimensional data space imposes a great computational challenge in genome-wide association studies. We introduce a network-based approach to supervise the search for three-locus models of disease susceptibility. Such statistical epistasis networks (SEN) are built using strong pairwise epistatic interac...

  4. Prevalence of epistasis in the evolution of influenza A surface proteins.

    Directory of Open Access Journals (Sweden)

    Sergey Kryazhimskiy

    2011-02-01

    Full Text Available The surface proteins of human influenza A viruses experience positive selection to escape both human immunity and, more recently, antiviral drug treatments. In bacteria and viruses, immune-escape and drug-resistant phenotypes often appear through a combination of several mutations that have epistatic effects on pathogen fitness. However, the extent and structure of epistasis in influenza viral proteins have not been systematically investigated. Here, we develop a novel statistical method to detect positive epistasis between pairs of sites in a protein, based on the observed temporal patterns of sequence evolution. The method rests on the simple idea that a substitution at one site should rapidly follow a substitution at another site if the sites are positively epistatic. We apply this method to the surface proteins hemagglutinin and neuraminidase of influenza A virus subtypes H3N2 and H1N1. Compared to a non-epistatic null distribution, we detect substantial amounts of epistasis and determine the identities of putatively epistatic pairs of sites. In particular, using sequence data alone, our method identifies epistatic interactions between specific sites in neuraminidase that have recently been demonstrated, in vitro, to confer resistance to the drug oseltamivir; these epistatic interactions are responsible for widespread drug resistance among H1N1 viruses circulating today. This experimental validation demonstrates the predictive power of our method to identify epistatic sites of importance for viral adaptation and public health. We conclude that epistasis plays a large role in shaping the molecular evolution of influenza viruses. In particular, sites with , which would normally not be identified as positively selected, can facilitate viral adaptation through epistatic interactions with their partner sites. The knowledge of specific interactions among sites in influenza proteins may help us to predict the course of antigenic evolution and

  5. Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication

    OpenAIRE

    Doust, Andrew N.; Lukens, Lewis; Olsen, Kenneth M; Mauro-Herrera, Margarita; Meyer, Ann; Rogers, Kimberly

    2014-01-01

    Recent archaeological studies of crop domestication have suggested a relatively slow spread and fixation of some key domestication traits, such as the loss of seed shattering. In contrast, genetic studies often indicate that domestication traits have a fairly simple genetic basis, which should facilitate their rapid evolution under selection. Here we examine previously underexplored factors that could account for this apparent disconnect: the roles of gene-by-gene interactions (epistasis) and...

  6. What’s Downstream? A Set of Classroom Exercises to Help Students Understand Recessive Epistasis

    Directory of Open Access Journals (Sweden)

    Jennifer K. Knight

    2013-08-01

    Full Text Available Undergraduate students in genetics and developmental biology courses often struggle with the concept of epistasis because they are unaware that the logic of gene interactions differs between enzymatic pathways and signaling pathways. If students try to develop and memorize a single simple rule for predicting epistatic relationships without taking into account the nature of the pathway under consideration, they can become confused by cases where the rule does not apply. To remedy this problem, we developed a short pre-/posttest, an in-class activity for small groups, and a series of clicker questions about recessive epistasis in the context of a signaling pathway that intersects with an enzymatic pathway. We also developed a series of homework problems that provide deliberate practice in applying concepts in epistasis to different pathways and experimental situations. Students show significant improvement from pretest to posttest, and perform well on homework and exam questions following this activity. Here we describe these materials, as well as the formative and summative assessment results from one group of students to show how the activities impact student learning.

  7. Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape.

    Directory of Open Access Journals (Sweden)

    Daniel J Kvitek

    2011-04-01

    Full Text Available The fitness landscape captures the relationship between genotype and evolutionary fitness and is a pervasive metaphor used to describe the possible evolutionary trajectories of adaptation. However, little is known about the actual shape of fitness landscapes, including whether valleys of low fitness create local fitness optima, acting as barriers to adaptive change. Here we provide evidence of a rugged molecular fitness landscape arising during an evolution experiment in an asexual population of Saccharomyces cerevisiae. We identify the mutations that arose during the evolution using whole-genome sequencing and use competitive fitness assays to describe the mutations individually responsible for adaptation. In addition, we find that a fitness valley between two adaptive mutations in the genes MTH1 and HXT6/HXT7 is caused by reciprocal sign epistasis, where the fitness cost of the double mutant prohibits the two mutations from being selected in the same genetic background. The constraint enforced by reciprocal sign epistasis causes the mutations to remain mutually exclusive during the experiment, even though adaptive mutations in these two genes occur several times in independent lineages during the experiment. Our results show that epistasis plays a key role during adaptation and that inter-genic interactions can act as barriers between adaptive solutions. These results also provide a new interpretation on the classic Dobzhansky-Muller model of reproductive isolation and display some surprising parallels with mutations in genes often associated with tumors.

  8. Systemic properties of metabolic networks lead to an epistasis-based model for heterosis.

    Science.gov (United States)

    Fiévet, Julie B; Dillmann, Christine; de Vienne, Dominique

    2010-01-01

    The genetic and molecular approaches to heterosis usually do not rely on any model of the genotype-phenotype relationship. From the generalization of Kacser and Burns' biochemical model for dominance and epistasis to networks with several variable enzymes, we hypothesized that metabolic heterosis could be observed because the response of the flux towards enzyme activities and/or concentrations follows a multi-dimensional hyperbolic-like relationship. To corroborate this, we used the values of systemic parameters accounting for the kinetic behaviour of four enzymes of the upstream part of glycolysis, and simulated genetic variability by varying in silico enzyme concentrations. Then we "crossed" virtual parents to get 1,000 hybrids, and showed that best-parent heterosis was frequently observed. The decomposition of the flux value into genetic effects, with the help of a novel multilocus epistasis index, revealed that antagonistic additive-by-additive epistasis effects play the major role in this framework of the genotype-phenotype relationship. This result is consistent with various observations in quantitative and evolutionary genetics, and provides a model unifying the genetic effects underlying heterosis. PMID:19916003

  9. A Massively Parallel Solver for the Mechanical Harmonic Analysis of Accelerator Cavities

    Energy Technology Data Exchange (ETDEWEB)

    Kononenko, O. [SLAC National Accelerator Lab., Menlo Park, CA (United States)

    2015-02-17

    ACE3P is a 3D massively parallel simulation suite that developed at SLAC National Accelerator Laboratory that can perform coupled electromagnetic, thermal and mechanical study. Effectively utilizing supercomputer resources, ACE3P has become a key simulation tool for particle accelerator R and D. A new frequency domain solver to perform mechanical harmonic response analysis of accelerator components is developed within the existing parallel framework. This solver is designed to determine the frequency response of the mechanical system to external harmonic excitations for time-efficient accurate analysis of the large-scale problems. Coupled with the ACE3P electromagnetic modules, this capability complements a set of multi-physics tools for a comprehensive study of microphonics in superconducting accelerating cavities in order to understand the RF response and feedback requirements for the operational reliability of a particle accelerator. (auth)

  10. Cost analysis of low energy electron accelerator for film curing

    International Nuclear Information System (INIS)

    Low energy electron accelerators are recognized as one of the advanced curing means of converting processes for films and papers. In the last three years the price of the accelerator equipment has been greatly reduced. The targeted application areas are mainly processes of curing inks, coatings, and adhesives to make packaging materials. The operating cost analyses were made for electron beam (EB) processes over the conventional ones without EB. Then three new proposals for cost reduction of EB processes are introduced. Also being developed are new EB chemistries such as coatings, laminating adhesives and inks. EB processes give instantaneous cure and EB chemistries are basically non solvent causing less VOC emission to the environment. These developments of both equipment and chemistries might have a potential to change conventional packaging film industries. (author)

  11. Circuit simulation and analysis for Qiangguang-I Accelerator

    International Nuclear Information System (INIS)

    The Qiangguang-I accelerator is made up of linear transformer driver(LTD), water transmission line, water switch and diode. In this paper, parameters of the LTD, transmission line and water switch were estimated, and circuit models of nonlinear magnetic cores and pulse power drivers were established. In addition, properties of silicon steel magnetic cores were investigated by experiments, the results of which are perfectly in accord with the simulation ones of the LTD module and accelerator. The simulation shows that the magnetic cores was not saturated under current running status. And the output parameters would not alter for the LTD store capacitance changing from 2.8 μF to 4.0 μF with 35 kV charge voltage. These all would establish the basis for the enhancement of energy store and output parameters. (authors)

  12. Case–Cohort Analysis with Accelerated Failure Time Model

    OpenAIRE

    Kong, Lan; Cai, Jianwen

    2008-01-01

    In a case–cohort design, covariates are assembled only for a subcohort that is randomly selected from the entire cohort and any additional cases outside the subcohort. This design is appealing for large cohort studies of rare disease, especially when the exposures of interest are expensive to ascertain for all the subjects. We propose statistical methods for analyzing the case–cohort data with a semiparametric accelerated failure time model that interprets the covariates effects as to acceler...

  13. Survival dimensionality reduction (SDR: development and clinical application of an innovative approach to detect epistasis in presence of right-censored data

    Directory of Open Access Journals (Sweden)

    Beretta Lorenzo

    2010-08-01

    Full Text Available Abstract Background Epistasis is recognized as a fundamental part of the genetic architecture of individuals. Several computational approaches have been developed to model gene-gene interactions in case-control studies, however, none of them is suitable for time-dependent analysis. Herein we introduce the Survival Dimensionality Reduction (SDR algorithm, a non-parametric method specifically designed to detect epistasis in lifetime datasets. Results The algorithm requires neither specification about the underlying survival distribution nor about the underlying interaction model and proved satisfactorily powerful to detect a set of causative genes in synthetic epistatic lifetime datasets with a limited number of samples and high degree of right-censorship (up to 70%. The SDR method was then applied to a series of 386 Dutch patients with active rheumatoid arthritis that were treated with anti-TNF biological agents. Among a set of 39 candidate genes, none of which showed a detectable marginal effect on anti-TNF responses, the SDR algorithm did find that the rs1801274 SNP in the FcγRIIa gene and the rs10954213 SNP in the IRF5 gene non-linearly interact to predict clinical remission after anti-TNF biologicals. Conclusions Simulation studies and application in a real-world setting support the capability of the SDR algorithm to model epistatic interactions in candidate-genes studies in presence of right-censored data. Availability: http://sourceforge.net/projects/sdrproject/

  14. Stability analysis of CMFD acceleration for the wavelet expansion method of neutron transport equation

    Energy Technology Data Exchange (ETDEWEB)

    Zheng Youqi, E-mail: yqzheng@mail.xjtu.edu.cn [School of Nuclear Science and Technology, Xi' an Jiaotong University, Xi' an 710049, Shaanxi (China); Wu Hongchun; Cao Liangzhi [School of Nuclear Science and Technology, Xi' an Jiaotong University, Xi' an 710049, Shaanxi (China)

    2013-01-15

    This paper describes the stability analysis for the coarse mesh finite difference (CMFD) acceleration used in the wavelet expansion method. The nonlinear CMFD acceleration scheme is transformed by linearization and the Fourier ansatz is introduced into the linearized formulae. The spectral radius is defined as the stability criterion, which is the least upper bound (LUB) of the largest eigenvalue of Fourier analysis matrix. The stability analysis considers the effect of mesh size (spectral length), coarse mesh division and scattering ratio. The results show that for the wavelet expansion method, the CMFD acceleration is conditionally stable. The small size of fine mesh brings stability and fast convergent. With the increase of the mesh size, the stability becomes worse. The scattering ratio does not impact the stability obviously. It makes the CMFD acceleration highly efficient in the strong scattering case. The results of Fourier analysis are verified by the numerical tests based on a homogeneous slab problem.

  15. The set of prime numbers: Multiscale analysis and numeric accelerators

    International Nuclear Information System (INIS)

    In this work, we show that the prime numbers follow a multiscale distribution. Indeed they can be classified thanks to tree structures, which are expressed in terms of two maximal subsets of N and using multilayer selection rules, acting on these sets of prime candidates. Consequently, the prime numbers follow a specific deterministic rules. Indeed, a numeric accelerator for generating primes can be realized in terms of the above mentioned specific rules. From the comparison with the Fibonacci numbers a beautiful harmony comes in terms of the Golden Mean which is relevant to high energy physics and E-Infinity theory too.

  16. Accelerated testing statistical models, test plans, and data analysis

    CERN Document Server

    Nelson, Wayne B

    2009-01-01

    The Wiley-Interscience Paperback Series consists of selected books that have been made more accessible to consumers in an effort to increase global appeal and general circulation. With these new unabridged softcover volumes, Wiley hopes to extend the lives of these works by making them available to future generations of statisticians, mathematicians, and scientists. "". . . a goldmine of knowledge on accelerated life testing principles and practices . . . one of the very few capable of advancing the science of reliability. It definitely belongs in every bookshelf on engineering.""-Dev G.

  17. Fast Multipole Accelerated Multiscale Analysis on the Sphere

    Science.gov (United States)

    Gutting, M.

    2013-12-01

    Spherical wavelets allow a space-frequency decomposition of many geophysical quantities on the sphere. Moreover, due to their localizing properties regional modeling or the improvement of a global model in a part of the sphere is possible. Certain types of spherical wavelets allow the acceleration of the spherical convolution by the fast multipole method. The main idea of the fast multipole algorithm consists of a hierarchical decomposition of the computational domain into cubes and a kernel approximation for the more distant points. The kernel evaluation is performed directly only for points in neighboring cubes on the finest level. The contributions of the other points are transferred into a set of coefficients. The kernel approximation in terms of inner and outer harmonics is applied on the coarsest possible level using translations of these coefficients. This reduces the numerical effort of the spherical convolution for a prescribed accuracy of the kernel approximation. Wavelet methods on the sphere come along with a tree algorithm that allows the computation of the lower frequency scales from a starting scale that contains the highest frequency parts of the signal. The application of the fast multipole method can accelerate the computation of this starting point as well as the tree algorithm itself. Applications to gravitational field modeling and spherical denoising are presented and finally, the extension to boundary value problems is considered where the boundary is the known surface of the Earth itself.

  18. A universal postprocessing toolkit for accelerator simulation and data analysis

    International Nuclear Information System (INIS)

    The Self-Describing Data Sets (SDDS) toolkit comprises about 70 generally-applicable programs sharing a common data protocol. At the Advanced Photon Source (APS), SDDS performs the vast majority of operational data collection and processing, most data display functions, and many control functions. In addition, a number of accelerator simulation codes use SDDS for all post-processing and data display. This has three principle advantages: first, simulation codes need not provide customized post-processing tools, thus simplifying development and maintenance. Second, users can enhance code capabilities without changing the code itself, by adding SDDS-based pre- and post-processing. Third, multiple codes can be used together more easily, by employing SDDS for data transfer and adaptation. Given its broad applicability, the SDDS file protocol is surprisingly simple, making it quite easy for simulations to generate SDDS-compliant data. This paper discusses the philosophy behind SDDS, contrasting it with some recent trends, and outlines the capabilities of the toolkit. The paper also gives examples of using SDDS for accelerator simulation

  19. Longitudinal jitter analysis of linear accelerator electron gun

    CERN Document Server

    Mingshan, Liu; Iqbal, Munawar

    2015-01-01

    We present measurement and analyses of longitudinal timing jitter of Beijing Electron Positron Collider (BEPCII) linear accelerator electron gun. We simulated longitudinal jitter effect of the gun using PARMELA about beam performance including beam profile, average energy, energy spread, longitudinal phase of reference particle and XY emittance. The maximum percentage difference of the beam parameters are calculated to be; 100%, 13.27%, 42.24%, 7.79% and 65.01%, 86.81%, respectively due to which the bunching efficiency is reduced to 54%. The simulation results are in agreement with test and are helpful to optimize the beam parameters by tuning the trigger timing of the gun during the bunching process.

  20. Control system analysis for the perturbed linear accelerator rf system

    CERN Document Server

    Sung Il Kwon

    2002-01-01

    This paper addresses the modeling problem of the linear accelerator RF system in SNS. Klystrons are modeled as linear parameter varying systems. The effect of the high voltage power supply ripple on the klystron output voltage and the output phase is modeled as an additive disturbance. The cavity is modeled as a linear system and the beam current is modeled as the exogenous disturbance. The output uncertainty of the low level RF system which results from the uncertainties in the RF components and cabling is modeled as multiplicative uncertainty. Also, the feedback loop uncertainty and digital signal processing signal conditioning subsystem uncertainties are lumped together and are modeled as multiplicative uncertainty. Finally, the time delays in the loop are modeled as a lumped time delay. For the perturbed open loop system, the closed loop system performance, and stability are analyzed with the PI feedback controller.

  1. Reactivity determination in accelerator driven reactors using reactor noise analysis

    Directory of Open Access Journals (Sweden)

    Kostić Ljiljana 1

    2002-01-01

    Full Text Available Feynman-alpha and Rossi-alpha methods are used in traditional nuclear reactors to determine the subcritical reactivity of a system. The methods are based on the measurement of the mean value, variance and the covariance of detector counts for different measurement times. Such methods attracted renewed attention recently with the advent of the so-called accelerator driven reactors (ADS proposed some time ago. The ADS systems, intended to be used either in energy generation or transuranium transmutation, will use a subcritical core with a strong spallation source. A spallation source has statistical properties that are different from those traditionally used by radioactive sources. In such reactors the monitoring of the subcritical reactivity is very important, and a statistical method, such as the Feynman-alpha method, is capable of resolving this problem.

  2. Omega3P: A Parallel Finite-Element Eigenmode Analysis Code for Accelerator Cavities

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Lie-Quan; Li, Zenghai; Ng, Cho; Ko, Kwok; /SLAC

    2009-03-04

    Omega3P is a parallel eigenmode calculation code for accelerator cavities in frequency domain analysis using finite-element methods. In this report, we will present detailed finite-element formulations and resulting eigenvalue problems for lossless cavities, cavities with lossy materials, cavities with imperfectly conducting surfaces, and cavities with waveguide coupling. We will discuss the parallel algorithms for solving those eigenvalue problems and demonstrate modeling of accelerator cavities through different examples.

  3. Development of a multi-functional and small-scale ion accelerator for surface analysis

    International Nuclear Information System (INIS)

    A multi-functional and small-scale ion accelerator has been developed for surface analysis. The maximum power of the accelerator is 200 kV×1 mA and an extremely low-energy beam is produced by using a deceleration power supply in place of an acceleration one. A beam of 1 ns in minimum pulse width can be obtained by means of an electrostatic einzel lens and a fast electric deflector in order to improve the signal to noise ratio in beam measurement and also enable energy measurement using a TOF method. In addition, the accelerator is equipped with a microbeam apparatus. It delivers a micro beam around 3 μm in minimum diameter and can be used with a scanner fabricated from XY deflectors or a movable stage for surface analysis. Also the accelerator can be controlled remotely through the Internet with safety connection. A low-energy proton PIXE surface analysis experiment on a corpuscular sample was successfully performed with this accelerator system. (author)

  4. Statistical epistasis and functional brain imaging support a role of voltage-gated potassium channels in human memory.

    Directory of Open Access Journals (Sweden)

    Angela Heck

    Full Text Available Despite the current progress in high-throughput, dense genome scans, a major portion of complex traits' heritability still remains unexplained, a phenomenon commonly termed "missing heritability." The negligence of analytical approaches accounting for gene-gene interaction effects, such as statistical epistasis, is probably central to this phenomenon. Here we performed a comprehensive two-way SNP interaction analysis of human episodic memory, which is a heritable complex trait, and focused on 120 genes known to show differential, memory-related expression patterns in rat hippocampus. Functional magnetic resonance imaging was also used to capture genotype-dependent differences in memory-related brain activity. A significant, episodic memory-related interaction between two markers located in potassium channel genes (KCNB2 and KCNH5 was observed (P(nominal combined=0.000001. The epistatic interaction was robust, as it was significant in a screening (P(nominal=0.0000012 and in a replication sample (P(nominal=0.01. Finally, we found genotype-dependent activity differences in the parahippocampal gyrus (P(nominal=0.001 supporting the behavioral genetics finding. Our results demonstrate the importance of analytical approaches that go beyond single marker statistics of complex traits.

  5. A developmental systems perspective on epistasis: computational exploration of mutational interactions in model developmental regulatory networks.

    Directory of Open Access Journals (Sweden)

    Jayson Gutiérrez

    Full Text Available The way in which the information contained in genotypes is translated into complex phenotypic traits (i.e. embryonic expression patterns depends on its decoding by a multilayered hierarchy of biomolecular systems (regulatory networks. Each layer of this hierarchy displays its own regulatory schemes (i.e. operational rules such as +/- feedback and associated control parameters, resulting in characteristic variational constraints. This process can be conceptualized as a mapping issue, and in the context of highly-dimensional genotype-phenotype mappings (GPMs epistatic events have been shown to be ubiquitous, manifested in non-linear correspondences between changes in the genotype and their phenotypic effects. In this study I concentrate on epistatic phenomena pervading levels of biological organization above the genetic material, more specifically the realm of molecular networks. At this level, systems approaches to studying GPMs are specially suitable to shed light on the mechanistic basis of epistatic phenomena. To this aim, I constructed and analyzed ensembles of highly-modular (fully interconnected networks with distinctive topologies, each displaying dynamic behaviors that were categorized as either arbitrary or functional according to early patterning processes in the Drosophila embryo. Spatio-temporal expression trajectories in virtual syncytial embryos were simulated via reaction-diffusion models. My in silico mutational experiments show that: 1 the average fitness decay tendency to successively accumulated mutations in ensembles of functional networks indicates the prevalence of positive epistasis, whereas in ensembles of arbitrary networks negative epistasis is the dominant tendency; and 2 the evaluation of epistatic coefficients of diverse interaction orders indicates that, both positive and negative epistasis are more prevalent in functional networks than in arbitrary ones. Overall, I conclude that the phenotypic and fitness effects of

  6. Association mapping for epistasis and environmental interaction of yield traits in 323 cotton cultivars under 9 different environments.

    Directory of Open Access Journals (Sweden)

    Yinhua Jia

    Full Text Available Improving yield is a major objective for cotton breeding schemes, and lint yield and its three component traits (boll number, boll weight and lint percentage are complex traits controlled by multiple genes and various environments. Association mapping was performed to detect markers associated with these four traits using 651 simple sequence repeats (SSRs. A mixed linear model including epistasis and environmental interaction was used to screen the loci associated with these four yield traits by 323 accessions of Gossypium hirsutum L. evaluated in nine different environments. 251 significant loci were detected to be associated with lint yield and its three components, including 69 loci with individual effects and all involved in epistasis interactions. These significant loci explain ∼ 62.05% of the phenotypic variance (ranging from 49.06% ∼ 72.29% for these four traits. It was indicated by high contribution of environmental interaction to the phenotypic variance for lint yield and boll numbers, that genetic effects of SSR loci were susceptible to environment factors. Shared loci were also observed among these four traits, which may be used for simultaneous improvement in cotton breeding for yield traits. Furthermore, consistent and elite loci were screened with -Log10 (P-value >8.0 based on predicted effects of loci detected in different environments. There was one locus and 6 pairs of epistasis for lint yield, 4 loci and 10 epistasis for boll number, 15 loci and 2 epistasis for boll weight, and 2 loci and 5 epistasis for lint percentage, respectively. These results provided insights into the genetic basis of lint yield and its components and may be useful for marker-assisted breeding to improve cotton production.

  7. Association Mapping for Epistasis and Environmental Interaction of Yield Traits in 323 Cotton Cultivars under 9 Different Environments

    Science.gov (United States)

    Pan, Zhaoe; Wang, Xiwen; He, Shoupu; Xiao, Songhua; Shi, Weijun; Zhou, Zhongli; Pang, Baoyin; Wang, Liru; Liu, Jianguang; Ma, Jun; Du, Xiongming; Zhu, Jun

    2014-01-01

    Improving yield is a major objective for cotton breeding schemes, and lint yield and its three component traits (boll number, boll weight and lint percentage) are complex traits controlled by multiple genes and various environments. Association mapping was performed to detect markers associated with these four traits using 651 simple sequence repeats (SSRs). A mixed linear model including epistasis and environmental interaction was used to screen the loci associated with these four yield traits by 323 accessions of Gossypium hirsutum L. evaluated in nine different environments. 251 significant loci were detected to be associated with lint yield and its three components, including 69 loci with individual effects and all involved in epistasis interactions. These significant loci explain ∼ 62.05% of the phenotypic variance (ranging from 49.06% ∼ 72.29% for these four traits). It was indicated by high contribution of environmental interaction to the phenotypic variance for lint yield and boll numbers, that genetic effects of SSR loci were susceptible to environment factors. Shared loci were also observed among these four traits, which may be used for simultaneous improvement in cotton breeding for yield traits. Furthermore, consistent and elite loci were screened with −Log10 (P-value) >8.0 based on predicted effects of loci detected in different environments. There was one locus and 6 pairs of epistasis for lint yield, 4 loci and 10 epistasis for boll number, 15 loci and 2 epistasis for boll weight, and 2 loci and 5 epistasis for lint percentage, respectively. These results provided insights into the genetic basis of lint yield and its components and may be useful for marker-assisted breeding to improve cotton production. PMID:24810754

  8. QTL Mapping and Epistasis Analysis for Phytic Acid Concentration in Rice Grain by Using the Bayesian Model Selection%利用贝叶斯法进行水稻籽粒植酸含量性状的QTL定位及互作分析

    Institute of Scientific and Technical Information of China (English)

    李茂柏; 王慧; 张建明; 李丁鲁; 杨润清; 周宇琼; 朴钟泽

    2009-01-01

    Main QTL and epistasis interaction effects for phytic acid concentration in rice grain were investigated by using a F_2 population consisted of 172 lines derived from the cross between an indica rice LPA(the grain phytic acid concentration was 7.11 mg/g) and a japonica rice Zhonghua 11(the phytic acid concentration was 11.92 mg/g) with the Bayesian model selection. A genetic linkage map including 126 SSR and 4 STS markers was constructed with the F_2 population. Three main QTLs related to phytic acid concentration in rice grain were detected. They were located on chromosomes 3, 5, and 6, explaining 5.38%, 8.02%, and 4.62% of phenotypic variation, respectively. The three alleles for reducing the phytic aid concentration were from the parent LPA. Ten pairs of epistatic interaction were detected on chromosomes 1, 3, 5, 6, and 11, with the interaction effects from 1.69 to 5.18 and the percentages of phenotypic variance ranged from 8.67% to 24.73%.%利用水稻植酸含量差异较大的品种中花11(粳型)和LPA(籼型)为亲本杂交获得F_2群体的172个单株,构建了含126个SSR和4个STS标记的遗传连锁图谱,利用贝叶斯(Bayesian)法对水稻籽粒植酸含量性状进行了主效应QTL定位和上位性互作分析.共检测到 3 个与水稻籽粒植酸含量性状有关的主效QTL,分布在第3、5和6 染色体的相应区间内,表型贡献率分别为5.38%、8.02%和4.62%,降低籽粒植酸含量的等位基因均来自亲本LPA.检测到10对上位性互作影响籽粒植酸含量, 分布于水稻第1、3、5、6、11染色体上,互作效应值为1.69~5.18,其表型变异的解释率为8.67%~24.73%.

  9. Cuckoo search epistasis: a new method for exploring significant genetic interactions.

    Science.gov (United States)

    Aflakparast, M; Salimi, H; Gerami, A; Dubé, M-P; Visweswaran, S; Masoudi-Nejad, A

    2014-06-01

    The advent of high-throughput sequencing technology has resulted in the ability to measure millions of single-nucleotide polymorphisms (SNPs) from thousands of individuals. Although these high-dimensional data have paved the way for better understanding of the genetic architecture of common diseases, they have also given rise to challenges in developing computational methods for learning epistatic relationships among genetic markers. We propose a new method, named cuckoo search epistasis (CSE) for identifying significant epistatic interactions in population-based association studies with a case-control design. This method combines a computationally efficient Bayesian scoring function with an evolutionary-based heuristic search algorithm, and can be efficiently applied to high-dimensional genome-wide SNP data. The experimental results from synthetic data sets show that CSE outperforms existing methods including multifactorial dimensionality reduction and Bayesian epistasis association mapping. In addition, on a real genome-wide data set related to Alzheimer's disease, CSE identified SNPs that are consistent with previously reported results, and show the utility of CSE for application to genome-wide data. PMID:24549111

  10. Epistasis among Drosophila persimilis factors conferring hybrid male sterility with D. pseudoobscura bogotana.

    Science.gov (United States)

    Chang, Audrey S; Bennett, Sarah M; Noor, Mohamed A F

    2010-10-27

    The Bateson-Dobzhansky-Muller model posits that hybrid incompatibilities result from genetic changes that accumulate during population divergence. Indeed, much effort in recent years has been devoted to identifying genes associated with hybrid incompatibilities, often with limited success, suggesting that hybrid sterility and inviability are frequently caused by complex interactions between multiple loci and not by single or a small number of gene pairs. Our previous study showed that the nature of epistasis between sterility-conferring QTL in the Drosophila persimilis-D. pseudoobscura bogotana species pair is highly specific. Here, we further dissect one of the three QTL underlying hybrid male sterility between these species and provide evidence for multiple factors within this QTL. This result indicates that the number of loci thought to contribute to hybrid dysfunction may have been underestimated, and we discuss how linkage and complex epistasis may be characteristic of the genetics of hybrid incompatibilities. We further pinpoint the location of one locus that confers hybrid male sterility when homozygous, dubbed "mule-like", to roughly 250 kilobases.

  11. Epistasis among Drosophila persimilis factors conferring hybrid male sterility with D. pseudoobscura bogotana.

    Directory of Open Access Journals (Sweden)

    Audrey S Chang

    Full Text Available The Bateson-Dobzhansky-Muller model posits that hybrid incompatibilities result from genetic changes that accumulate during population divergence. Indeed, much effort in recent years has been devoted to identifying genes associated with hybrid incompatibilities, often with limited success, suggesting that hybrid sterility and inviability are frequently caused by complex interactions between multiple loci and not by single or a small number of gene pairs. Our previous study showed that the nature of epistasis between sterility-conferring QTL in the Drosophila persimilis-D. pseudoobscura bogotana species pair is highly specific. Here, we further dissect one of the three QTL underlying hybrid male sterility between these species and provide evidence for multiple factors within this QTL. This result indicates that the number of loci thought to contribute to hybrid dysfunction may have been underestimated, and we discuss how linkage and complex epistasis may be characteristic of the genetics of hybrid incompatibilities. We further pinpoint the location of one locus that confers hybrid male sterility when homozygous, dubbed "mule-like", to roughly 250 kilobases.

  12. Epistasis modifies the dominance of loci causing hybrid male sterility in the Drosophila pseudoobscura species group.

    Science.gov (United States)

    Chang, Audrey S; Noor, Mohamed A F

    2010-01-01

    Speciation, the evolution of reproductive isolation between populations, serves as the driving force for generating biodiversity. Postzygotic barriers to gene flow, such as F(1) hybrid sterility and inviability, play important roles in the establishment and maintenance of biological species. F(1) hybrid incompatibilities in taxa that obey Haldane's rule, the observation that the heterogametic sex suffers greater hybrid fitness problems than the homogametic sex, are thought to often result from interactions between recessive-acting X-linked loci and dominant-acting autosomal loci. Because they play such prominent roles in producing hybrid incompatibilities, we examine the dominance and nature of epistasis between alleles derived from Drosophila persimilis that confer hybrid male sterility in the genetic background of its sister species, D. pseudoobscura bogotana. We show that epistasis elevates the apparent dominance of individually recessive-acting QTL such that they can contribute to F(1) hybrid sterility. These results have important implications for assumptions underlying theoretical models of hybrid incompatibilities and may offer a possible explanation for why, to date, identification of dominant-acting autosomal "speciation genes" has been challenging.

  13. A fast and powerful W-test for pairwise epistasis testing.

    Science.gov (United States)

    Wang, Maggie Haitian; Sun, Rui; Guo, Junfeng; Weng, Haoyi; Lee, Jack; Hu, Inchi; Sham, Pak Chung; Zee, Benny Chung-Ying

    2016-07-01

    Epistasis plays an essential role in the development of complex diseases. Interaction methods face common challenge of seeking a balance between persistent power, model complexity, computation efficiency, and validity of identified bio-markers. We introduce a novel W-test to identify pairwise epistasis effect, which measures the distributional difference between cases and controls through a combined log odds ratio. The test is model-free, fast, and inherits a Chi-squared distribution with data adaptive degrees of freedom. No permutation is needed to obtain the P-values. Simulation studies demonstrated that the W-test is more powerful in low frequency variants environment than alternative methods, which are the Chi-squared test, logistic regression and multifactor-dimensionality reduction (MDR). In two independent real bipolar disorder genome-wide associations (GWAS) datasets, the W-test identified significant interactions pairs that can be replicated, including SLIT3-CENPN, SLIT3-TMEM132D, CNTNAP2-NDST4 and CNTCAP2-RTN4R The genes in the pairs play central roles in neurotransmission and synapse formation. A majority of the identified loci are undiscoverable by main effect and are low frequency variants. The proposed method offers a powerful alternative tool for mapping the genetic puzzle underlying complex disorders. PMID:27112568

  14. Epistasis and maternal effects in experimental adaptation to chronic nutritional stress in Drosophila.

    Science.gov (United States)

    Vijendravarma, R K; Kawecki, T J

    2013-12-01

    Based on ecological and metabolic arguments, some authors predict that adaptation to novel, harsh environments should involve alleles showing negative (diminishing return) epistasis and/or that it should be mediated in part by evolution of maternal effects. Although the first prediction has been supported in microbes, there has been little experimental support for either prediction in multicellular eukaryotes. Here we use a line-cross design to study the genetic architecture of adaptation to chronic larval malnutrition in a population of Drosophila melanogaster that evolved on an extremely nutrient-poor larval food for 84 generations. We assayed three fitness-related traits (developmental rate, adult female weight and egg-to-adult viability) under the malnutrition conditions in 14 crosses between this selected population and a nonadapted control population originally derived from the same base population. All traits showed a pattern of negative epistasis between alleles improving performance under malnutrition. Furthermore, evolutionary changes in maternal traits accounted for half of the 68% increase in viability and for the whole of 8% reduction in adult female body weight in the selected population (relative to unselected controls). These results thus support both of the above predictions and point to the importance of nonadditive effects in adaptive microevolution.

  15. Epistasis and the Structure of Fitness Landscapes: Are Experimental Fitness Landscapes Compatible with Fisher's Geometric Model?

    Science.gov (United States)

    Blanquart, François; Bataillon, Thomas

    2016-06-01

    The fitness landscape defines the relationship between genotypes and fitness in a given environment and underlies fundamental quantities such as the distribution of selection coefficient and the magnitude and type of epistasis. A better understanding of variation in landscape structure across species and environments is thus necessary to understand and predict how populations will adapt. An increasing number of experiments investigate the properties of fitness landscapes by identifying mutations, constructing genotypes with combinations of these mutations, and measuring the fitness of these genotypes. Yet these empirical landscapes represent a very small sample of the vast space of all possible genotypes, and this sample is often biased by the protocol used to identify mutations. Here we develop a rigorous statistical framework based on Approximate Bayesian Computation to address these concerns and use this flexible framework to fit a broad class of phenotypic fitness models (including Fisher's model) to 26 empirical landscapes representing nine diverse biological systems. Despite uncertainty owing to the small size of most published empirical landscapes, the inferred landscapes have similar structure in similar biological systems. Surprisingly, goodness-of-fit tests reveal that this class of phenotypic models, which has been successful so far in interpreting experimental data, is a plausible in only three of nine biological systems. More precisely, although Fisher's model was able to explain several statistical properties of the landscapes-including the mean and SD of selection and epistasis coefficients-it was often unable to explain the full structure of fitness landscapes.

  16. Enabling More than Moore: Accelerated Reliability Testing and Risk Analysis for Advanced Electronics Packaging

    Science.gov (United States)

    Ghaffarian, Reza; Evans, John W.

    2014-01-01

    For five decades, the semiconductor industry has distinguished itself by the rapid pace of improvement in miniaturization of electronics products-Moore's Law. Now, scaling hits a brick wall, a paradigm shift. The industry roadmaps recognized the scaling limitation and project that packaging technologies will meet further miniaturization needs or ak.a "More than Moore". This paper presents packaging technology trends and accelerated reliability testing methods currently being practiced. Then, it presents industry status on key advanced electronic packages, factors affecting accelerated solder joint reliability of area array packages, and IPC/JEDEC/Mil specifications for characterizations of assemblies under accelerated thermal and mechanical loading. Finally, it presents an examples demonstrating how Accelerated Testing and Analysis have been effectively employed in the development of complex spacecraft thereby reducing risk. Quantitative assessments necessarily involve the mathematics of probability and statistics. In addition, accelerated tests need to be designed which consider the desired risk posture and schedule for particular project. Such assessments relieve risks without imposing additional costs. and constraints that are not value added for a particular mission. Furthermore, in the course of development of complex systems, variances and defects will inevitably present themselves and require a decision concerning their disposition, necessitating quantitative assessments. In summary, this paper presents a comprehensive view point, from technology to systems, including the benefits and impact of accelerated testing in offsetting risk.

  17. Detecting chaos in particle accelerators through the frequency map analysis method

    CERN Document Server

    Papaphilippou, Yannis

    2014-01-01

    The motion of beams in particle accelerators is dominated by a plethora of non-linear effects which can enhance chaotic motion and limit their performance. The application of advanced non-linear dynamics methods for detecting and correcting these effects and thereby increasing the region of beam stability plays an essential role during the accelerator design phase but also their operation. After describing the nature of non-linear effects and their impact on performance parameters of different particle accelerator categories, the theory of non-linear particle motion is outlined. The recent developments on the methods employed for the analysis of chaotic beam motion are detailed. In particular, the ability of the frequency map analysis method to detect chaotic motion and guide the correction of non-linear effects is demonstrated in particle tracking simulations but also experimental data.

  18. Detecting chaos in particle accelerators through the frequency map analysis method

    Energy Technology Data Exchange (ETDEWEB)

    Papaphilippou, Yannis, E-mail: Ioannis.Papaphilippou@cern.ch [European Organisation of Nuclear Research—CERN, Geneva (Switzerland)

    2014-06-01

    The motion of beams in particle accelerators is dominated by a plethora of non-linear effects, which can enhance chaotic motion and limit their performance. The application of advanced non-linear dynamics methods for detecting and correcting these effects and thereby increasing the region of beam stability plays an essential role during the accelerator design phase but also their operation. After describing the nature of non-linear effects and their impact on performance parameters of different particle accelerator categories, the theory of non-linear particle motion is outlined. The recent developments on the methods employed for the analysis of chaotic beam motion are detailed. In particular, the ability of the frequency map analysis method to detect chaotic motion and guide the correction of non-linear effects is demonstrated in particle tracking simulations but also experimental data.

  19. Detecting chaos in particle accelerators through the frequency map analysis method

    International Nuclear Information System (INIS)

    The motion of beams in particle accelerators is dominated by a plethora of non-linear effects, which can enhance chaotic motion and limit their performance. The application of advanced non-linear dynamics methods for detecting and correcting these effects and thereby increasing the region of beam stability plays an essential role during the accelerator design phase but also their operation. After describing the nature of non-linear effects and their impact on performance parameters of different particle accelerator categories, the theory of non-linear particle motion is outlined. The recent developments on the methods employed for the analysis of chaotic beam motion are detailed. In particular, the ability of the frequency map analysis method to detect chaotic motion and guide the correction of non-linear effects is demonstrated in particle tracking simulations but also experimental data

  20. Accelerating Climate Data Analysis and Visualization with Parallel Scripting

    Science.gov (United States)

    Mickelson, S. A.; Jacob, R. L.; Wilde, M.; Wozniak, J.; Dennis, J.

    2011-12-01

    Climate models are continuing to increase both in their resolution and the number of variables used, resulting in multi-terabyte model outputs. This large volume of data overwhelms the series of processing steps used to derive climate averages and produce visualizations. Since many of the tasks in the post- processing sequence are independent, we have applied task-parallel scripting to speed up the post-processing. We have re-written portions of the complex shell script that processes output from the Community Atmosphere Model in Swift, a high-level implicitly-parallel scripting language that uses data dependencies to automatically parallelize a workflow. This has resulted in valuable speedups in model analysis for this heavily-used procedure. We describe the structure, usage, performance, and our experiences with the resulting script.

  1. Negative Epistasis and Evolvability in TEM-1 ß-Lactamase- The Thin Line between an Enzyme's Conformational Freedom and Disorder

    NARCIS (Netherlands)

    Dellus-Gur, E.; Elias, M.; Caselli, E.; Prati, F.; Salverda, M.L.M.; Visser, de J.A.G.M.; Fraser, J.S.; Tawfik, D.S.

    2015-01-01

    Epistasis is a key factor in evolution since it determines which combinations of mutations provide adaptive solutions and which mutational pathways toward these solutions are accessible by natural selection. There is growing evidence for the pervasiveness of sign epistasis—a complete reversion of mu

  2. Accelerating residential PV expansion: demand analysis for competitive electricity markets

    International Nuclear Information System (INIS)

    This article quantifies the potential market for grid-connected, residential photovoltaic (PV) electricity integrated into new homes built in the US. It complements an earlier supply-side analysis by the authors that demonstrates the potential to reduce PV module prices below $1.5/Wp by scaling up existing thin-film technology in 100 MWp/yr manufacturing facilities. The present article demonstrates that, at that price, PV modules may be cost effective in 125,000 new home installations per year (0.5 GWp/yr). While this market is large enough to support multiple scaled up thin-film PV factories, inefficient energy pricing and demand-side market failures will inhibit prospective PV consumers without strong public policy support. Net metering rules, already implemented in many states to encourage PV market launch, represent a crude but reasonable surrogate for efficient electricity pricing mechanisms that may ultimately emerge to internalize the externality benefits of PV. These public benefits include reduced air pollution damages (estimated costs of damage to human health from fossil fuel power plants are presented in Appendix A), deferral of transmission and distribution capital expenditures, reduced exposure to fossil fuel price risks, and increased electricity system reliability for end users. Thus, net metering for PV ought to be implemented as broadly as possible and sustained until efficient pricing is in place. Complementary PV 'buydowns' (e.g., a renewable portfolio standard with a specific PV requirement) are needed to jumpstart regional PV markets

  3. Design and Analysis of a Micro-Optical Position Readout for Acceleration Sensing

    Energy Technology Data Exchange (ETDEWEB)

    Dickey, Fred M.; Holswade, Scott C.; Shagam, Richard N.

    1999-07-08

    Sandia National Laboratories is developing a MEMS-based trajectory safety subsystem, which allows enablement of critical functions only after a particular acceleration environment has been achieved. The device, known as an Environmental Sensing Device (ESD), consists of a suspended moving shuttle that translates a given distance when exposed to an appropriate acceleration environment. The shuttle contains an embedded code, consisting of grating structures, that is illuminated and optically read using a semiconductor laser and detector integrated together in a GaAs-based Photonic Integrated Circuit (PIC) flip-chip bonded to the assembly. This paper will describe the optical design and performance analysis of the embedded code features in the shuttle.

  4. The state of art of the NIES-TERRA (Accelerator analysis facility, National Institute for Environmental Studies)

    Energy Technology Data Exchange (ETDEWEB)

    Yoneda, Minoru; Shibata, Yasuyuki; Tanaka, Atsushi; Uchida, Masao; Hirota, Masashi; Uehiro, Takashi; Morita, Masatoshi [National Inst. for Environmental Studies Tsukuba, Ibaraki (Japan)

    2001-02-01

    The status of the NIES-TERRA accelerator facility in FY1999 is presented. Accelerator Mass Spectrometry (AMS) has been performed mainly for the routine measurement of environmental, geological, archaeological samples. Analysis has been done for Al-26, Be-10, as well as C-14. The operation experiences are described. The accelerator has been operated 23000 hours since its construction. Minor troubles during the operation are reported. The pretreatment system, required for the analysis in further precision, is under development. (A. Yamamoto)

  5. The present status of carbon 14 analysis and projects for beryllium 10 analysis at the Tandetron 1 accelerator, Nagoya University

    Energy Technology Data Exchange (ETDEWEB)

    Nakamura, Toshio; Oda, Hirotaka; Ikeda, Akiko; Niu, Etsuko [Nagoya Univ. (Japan)

    2001-02-01

    The operation experience in 1999 of the Tandetron accelerator age estimation system, Nagoya University, is reported, after the overview and the history of the accelerator is briefly described. Total number of carbon 14 environmental samples analyzed was 8567. The project of introducing new HVEE Tandetron for C-14 analysis, and modifying the present GIC Tandetron for Be-10 analysis is presented. Ion source shall be replaced, and the heavy ion detector shall be installed. Projected geological and archaeological studies using Be-10 are enumerated. (A. Yamamoto)

  6. DEVELOPMENT OF ACCELERATOR DATA REPORTING SYSTEM AND ITS APPLICATION TO TREND ANALYSIS OF BEAM CURRENT DATA

    Energy Technology Data Exchange (ETDEWEB)

    Padilla, M.J.; Blokland, W.

    2009-01-01

    Detailed ongoing information about the ion beam quality is crucial to the successful operation of the Spallation Neutron Source at Oak Ridge National Laboratory. In order to provide the highest possible neutron production time, ion beam quality is monitored to isolate possible problems or performance-related issues throughout the accelerator and accumulator ring. For example, beam current monitor (BCM) data is used to determine the quality of the beam transport through the accelerator. In this study, a reporting system infrastructure was implemented and used to generate a trend analysis report of the BCM data. The BCM data was analyzed to facilitate the identifi cation of monitor calibration issues, beam trends, beam abnormalities, beam deviations and overall beam quality. A comparison between transformed BCM report data and accelerator log entries shows promising results which represent correlations between the data and changes made within the accelerator. The BCM analysis report is one of many reports within a system that assist in providing overall beam quality information to facilitate successful beam operation. In future reports, additional data manipulation functions and analysis can be implemented and applied. Built-in and user-defi ned analytic functions are available throughout the reporting system and can be reused with new data.

  7. Hyperfractionated or accelerated radiotherapy in head and neck cancer: a meta-analysis

    DEFF Research Database (Denmark)

    Bourhis, J.; Overgaard, Jens; Audry, H.;

    2006-01-01

    BACKGROUND: Several trials have studied the role of unconventional fractionated radiotherapy in head and neck squamous cell carcinoma, but the effect of such treatment on survival is not clear. The aim of this meta-analysis was to assess whether this type of radiotherapy could improve survival......-specified categories: hyperfractionated, accelerated, and accelerated with total dose reduction. FINDINGS: 15 trials with 6515 patients were included. The median follow-up was 6 years. Tumours sites were mostly oropharynx and larynx; 5221 (74%) patients had stage III-IV disease (International Union Against Cancer...... radiotherapy (2% with accelerated fractionation without total dose reduction and 1.7% with total dose reduction at 5 years, p=0.02). There was a benefit on locoregional control in favour of altered fractionation versus conventional radiotherapy (6.4% at 5 years; p<0.0001), which was particularly efficient in...

  8. Interface for the rapid analysis of liquid samples by accelerator mass spectrometry

    Science.gov (United States)

    Turteltaub, Kenneth; Ognibene, Ted; Thomas, Avi; Daley, Paul F; Salazar Quintero, Gary A; Bench, Graham

    2014-02-04

    An interface for the analysis of liquid sample having carbon content by an accelerator mass spectrometer including a wire, defects on the wire, a system for moving the wire, a droplet maker for producing droplets of the liquid sample and placing the droplets of the liquid sample on the wire in the defects, a system that converts the carbon content of the droplets of the liquid sample to carbon dioxide gas in a helium stream, and a gas-accepting ion source connected to the accelerator mass spectrometer that receives the carbon dioxide gas of the sample in a helium stream and introduces the carbon dioxide gas of the sample into the accelerator mass spectrometer.

  9. Acceleration of criticality analysis solution convergence by matrix eigenvector for a system with weak neutron interaction

    Energy Technology Data Exchange (ETDEWEB)

    Nomura, Yasushi; Takada, Tomoyuki; Kuroishi, Takeshi [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment; Kadotani, Hiroyuki [Shizuoka Sangyo Univ., Iwata, Shizuoka (Japan)

    2003-03-01

    In the case of Monte Carlo calculation to obtain a neutron multiplication factor for a system of weak neutron interaction, there might be some problems concerning convergence of the solution. Concerning this difficulty in the computer code calculations, theoretical derivation was made from the general neutron transport equation and consideration was given for acceleration of solution convergence by using the matrix eigenvector in this report. Accordingly, matrix eigenvector calculation scheme was incorporated together with procedure to make acceleration of convergence into the continuous energy Monte Carlo code MCNP. Furthermore, effectiveness of acceleration of solution convergence by matrix eigenvector was ascertained with the results obtained by applying to the two OECD/NEA criticality analysis benchmark problems. (author)

  10. Synergistic interaction between ankle and knee during hopping revealed through induced acceleration analysis.

    Science.gov (United States)

    João, Filipa; Veloso, António; Cabral, Sílvia; Moniz-Pereira, Vera; Kepple, Thomas

    2014-02-01

    The forces produced by the muscles can deliver energy to a target segment they are not attached to, by transferring this energy throughout the other segments in the chain. This is a synergistic way of functioning, which allows muscles to accelerate or decelerate segments in order to reach the target one. The purpose of this study was to characterize the contribution of each lower extremity joint to the vertical acceleration of the body's center of mass during a hopping exercise. To accomplish this, an induced acceleration analysis was performed using a model with eight segments. The results indicate that the strategies produced during a hopping exercise rely on the synergy between the knee and ankle joints, with most of the vertical acceleration being produced by the knee extensors, while the ankle plantar flexors act as stabilizers of the foot. This synergy between the ankle and the knee is perhaps a mechanism that allows the transfer of power from the knee muscles to the ground, and we believe that in this particular task the net action of the foot and ankle moments is to produce a stable foot with little overall acceleration.

  11. Determination of the radionuclide inventory in accelerator waste using calculation and radiochemical analysis

    Energy Technology Data Exchange (ETDEWEB)

    Schumann, D.; Neuhausen, J.; Weinreich, R. [Paul Scherrer Institut, CH-5232 Villigen PSI (Switzerland); Atchison, F. [Paul Scherrer Institut, CH-5232 Villigen PSI (Switzerland)], E-mail: francis.atchison@psi.ch; Kubik, P.; Synal, H.-A. [Paul Scherrer Institut, c/o Institute of Particle Physics, ETH Zuerich, CH-8093 Zurich (Switzerland); Korschinek, G.; Faestermann, Th.; Rugel, G. [Technische Universitaet Muenchen, D-85747 Garching (Germany)

    2007-11-15

    We use a description of the work carried out to determine the radioactive inventory for a redundant beam-dump from the PSI accelerator complex, as an illustration of techniques for the classification and characterisation of accelerator waste and how some difficulties can be circumvented. The work has been carried out using a combination of calculation and sample analysis: The inventory calculation effectively involves a large scale Monte-Carlo transport calculation of a medium-sized spallation facility and for the sample analysis, standard radiochemical analysis techniques have had to be extended to include AMS measurements so as to allow measurement of some of the long half-life, waste disposal relevant, nuclides.

  12. Delayed resonator with acceleration feedback - Complete stability analysis by spectral methods and vibration absorber design

    Science.gov (United States)

    Vyhlídal, Tomáš; Olgac, Nejat; Kučera, Vladimír

    2014-12-01

    This paper deals with the problem of active vibration suppression using the concept of delayed resonator (DR) absorber with acceleration feedback. A complete dynamic analysis of DR and its coupling with a single degree of freedom mechanical system are performed. Due to the presence of a delay in the acceleration feedback, the dynamics of the resonator itself, as well as the dynamics of combined system are of ‘neutral' character. On this system, spectral methods are applied to perform a complete stability analysis. Particularly, the method of cluster treatment of characteristic roots is used to determine stability boundaries in the space of the resonator parameters. Based on this analysis, a methodology to select the resonator parameters is proposed in order to guarantee desirable suppression characteristics and to provide safe stability margins. An example case study is included to demonstrate these analytical results.

  13. iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies

    Directory of Open Access Journals (Sweden)

    Piriyapongsa Jittima

    2012-12-01

    Full Text Available Abstract Background Genome-wide association studies (GWAS do not provide a full account of the heritability of genetic diseases since gene-gene interactions, also known as epistasis are not considered in single locus GWAS. To address this problem, a considerable number of methods have been developed for identifying disease-associated gene-gene interactions. However, these methods typically fail to identify interacting markers explaining more of the disease heritability over single locus GWAS, since many of the interactions significant for disease are obscured by uninformative marker interactions e.g., linkage disequilibrium (LD. Results In this study, we present a novel SNP interaction prioritization algorithm, named iLOCi (Interacting Loci. This algorithm accounts for marker dependencies separately in case and control groups. Disease-associated interactions are then prioritized according to a novel ranking score calculated from the difference in marker dependencies for every possible pair between case and control groups. The analysis of a typical GWAS dataset can be completed in less than a day on a standard workstation with parallel processing capability. The proposed framework was validated using simulated data and applied to real GWAS datasets using the Wellcome Trust Case Control Consortium (WTCCC data. The results from simulated data showed the ability of iLOCi to identify various types of gene-gene interactions, especially for high-order interaction. From the WTCCC data, we found that among the top ranked interacting SNP pairs, several mapped to genes previously known to be associated with disease, and interestingly, other previously unreported genes with biologically related roles. Conclusion iLOCi is a powerful tool for uncovering true disease interacting markers and thus can provide a more complete understanding of the genetic basis underlying complex disease. The program is available for download at http://www4a.biotec.or.th/GI/tools/iloci.

  14. Stability analysis of multigrid acceleration methods for the solution of partial differential equations

    Science.gov (United States)

    Fay, John F.

    1990-01-01

    A calculation is made of the stability of various relaxation schemes for the numerical solution of partial differential equations. A multigrid acceleration method is introduced, and its effects on stability are explored. A detailed stability analysis of a simple case is carried out and verified by numerical experiment. It is shown that the use of multigrids can speed convergence by several orders of magnitude without adversely affecting stability.

  15. Wavelet Analysis of Acceleration Response of Beam Under the Moving Mass for Damage Assessment

    Science.gov (United States)

    Vaidya, Tanuja; Chatterjee, Animesh

    2016-04-01

    In the present study, acceleration response of cracked beam is analyzed by using the wavelet transform to detect the crack presence, its location and also to predict the crack severity. The equation of motion of beam under the moving mass is solved by using the fourth order Runge-Kutta method. A code is written by expanding the equation for first three vibration modes. Acceleration signal of the damaged beam under the moving mass contains the discontinuity at the crack location. This discontinuity contained in the acceleration signal is sufficiently visible but it is very small for some signals. Therefore, the acceleration signals are transformed using the wavelet analysis. A wavelet coefficient peak occurs at the location of discontinuity, so that we can identify the crack presence and its location. From the value of wavelet coefficient peak, we can also predict the crack effect with respect to the change in velocity of moving mass and change in crack depth. The main advantage of this method is that the wavelet coefficient peak is sufficiently higher even for the higher velocities and small size crack.

  16. Three dimensional gait analysis using wearable acceleration and gyro sensors based on quaternion calculations.

    Science.gov (United States)

    Tadano, Shigeru; Takeda, Ryo; Miyagawa, Hiroaki

    2013-01-01

    This paper proposes a method for three dimensional gait analysis using wearable sensors and quaternion calculations. Seven sensor units consisting of a tri-axial acceleration and gyro sensors, were fixed to the lower limbs. The acceleration and angular velocity data of each sensor unit were measured during level walking. The initial orientations of the sensor units were estimated using acceleration data during upright standing position and the angular displacements were estimated afterwards using angular velocity data during gait. Here, an algorithm based on quaternion calculation was implemented for orientation estimation of the sensor units. The orientations of the sensor units were converted to the orientations of the body segments by a rotation matrix obtained from a calibration trial. Body segment orientations were then used for constructing a three dimensional wire frame animation of the volunteers during the gait. Gait analysis was conducted on five volunteers, and results were compared with those from a camera-based motion analysis system. Comparisons were made for the joint trajectory in the horizontal and sagittal plane. The average RMSE and correlation coefficient (CC) were 10.14 deg and 0.98, 7.88 deg and 0.97, 9.75 deg and 0.78 for the hip, knee and ankle flexion angles, respectively. PMID:23877128

  17. Three Dimensional Gait Analysis Using Wearable Acceleration and Gyro Sensors Based on Quaternion Calculations

    Directory of Open Access Journals (Sweden)

    Hiroaki Miyagawa

    2013-07-01

    Full Text Available This paper proposes a method for three dimensional gait analysis using wearable sensors and quaternion calculations. Seven sensor units consisting of a tri-axial acceleration and gyro sensors, were fixed to the lower limbs. The acceleration and angular velocity data of each sensor unit were measured during level walking. The initial orientations of the sensor units were estimated using acceleration data during upright standing position and the angular displacements were estimated afterwards using angular velocity data during gait. Here, an algorithm based on quaternion calculation was implemented for orientation estimation of the sensor units. The orientations of the sensor units were converted to the orientations of the body segments by a rotation matrix obtained from a calibration trial. Body segment orientations were then used for constructing a three dimensional wire frame animation of the volunteers during the gait. Gait analysis was conducted on five volunteers, and results were compared with those from a camera-based motion analysis system. Comparisons were made for the joint trajectory in the horizontal and sagittal plane. The average RMSE and correlation coefficient (CC were 10.14 deg and 0.98, 7.88 deg and 0.97, 9.75 deg and 0.78 for the hip, knee and ankle flexion angles, respectively.

  18. LAVENDER: A steady-state core analysis code for design studies of accelerator driven subcritical reactors

    Energy Technology Data Exchange (ETDEWEB)

    Zhou, Shengcheng; Wu, Hongchun; Cao, Liangzhi; Zheng, Youqi, E-mail: yqzheng@mail.xjtu.edu.cn; Huang, Kai; He, Mingtao; Li, Xunzhao

    2014-10-15

    Highlights: • A new code system for design studies of accelerator driven subcritical reactors (ADSRs) is developed. • S{sub N} transport solver in triangular-z meshes, fine deletion analysis and multi-channel thermal-hydraulics analysis are coupled in the code. • Numerical results indicate that the code is reliable and efficient for design studies of ADSRs. - Abstract: Accelerator driven subcritical reactors (ADSRs) have been proposed and widely investigated for the transmutation of transuranics (TRUs). ADSRs have several special characteristics, such as the subcritical core driven by spallation neutrons, anisotropic neutron flux distribution and complex geometry etc. These bring up requirements for development or extension of analysis codes to perform design studies. A code system named LAVENDER has been developed in this paper. It couples the modules for spallation target simulation and subcritical core analysis. The neutron transport-depletion calculation scheme is used based on the homogenized cross section from assembly calculations. A three-dimensional S{sub N} nodal transport code based on triangular-z meshes is employed and a multi-channel thermal-hydraulics analysis model is integrated. In the depletion calculation, the evolution of isotopic composition in the core is evaluated using the transmutation trajectory analysis algorithm (TTA) and fine depletion chains. The new code is verified by several benchmarks and code-to-code comparisons. Numerical results indicate that LAVENDER is reliable and efficient to be applied for the steady-state analysis and reactor core design of ADSRs.

  19. Experimental design and analysis for accelerated degradation tests with Li-ion cells.

    Energy Technology Data Exchange (ETDEWEB)

    Doughty, Daniel Harvey; Thomas, Edward Victor; Jungst, Rudolph George; Roth, Emanuel Peter

    2003-08-01

    This document describes a general protocol (involving both experimental and data analytic aspects) that is designed to be a roadmap for rapidly obtaining a useful assessment of the average lifetime (at some specified use conditions) that might be expected from cells of a particular design. The proposed experimental protocol involves a series of accelerated degradation experiments. Through the acquisition of degradation data over time specified by the experimental protocol, an unambiguous assessment of the effects of accelerating factors (e.g., temperature and state of charge) on various measures of the health of a cell (e.g., power fade and capacity fade) will result. In order to assess cell lifetime, it is necessary to develop a model that accurately predicts degradation over a range of the experimental factors. In general, it is difficult to specify an appropriate model form without some preliminary analysis of the data. Nevertheless, assuming that the aging phenomenon relates to a chemical reaction with simple first-order rate kinetics, a data analysis protocol is also provided to construct a useful model that relates performance degradation to the levels of the accelerating factors. This model can then be used to make an accurate assessment of the average cell lifetime. The proposed experimental and data analysis protocols are illustrated with a case study involving the effects of accelerated aging on the power output from Gen-2 cells. For this case study, inadequacies of the simple first-order kinetics model were observed. However, a more complex model allowing for the effects of two concurrent mechanisms provided an accurate representation of the experimental data.

  20. Variability in working memory performance explained by epistasis vs polygenic scores in the ZNF804A pathway

    DEFF Research Database (Denmark)

    Nicodemus, Kristin K; Hargreaves, April; Morris, Derek;

    2014-01-01

    was the relative contribution of the polygenic score vs epistasis in variation explained. OBJECTIVES: To (1) assess the association between SNPs in ZNF804A and the ZNF804A polygenic score with measures of cognition in cases with psychosis and (2) assess whether epistasis within the ZNF804A pathway could explain...... additional variation above and beyond that explained by the polygenic score. DESIGN, SETTING, AND PARTICIPANTS: Patients with psychosis (n = 424) were assessed in areas of cognitive ability impaired in schizophrenia including IQ, memory, attention, and social cognition. We used the Psychiatric GWAS...... Consortium 1 schizophrenia genome-wide association study to calculate a polygenic score based on identified risk variants within this genetic pathway. Cognitive measures significantly associated with the polygenic score were tested for an epistatic component using a training set (n = 170), which was used...

  1. RF-thermal-structural-RF coupled analysis on a travelling wave disk-loaded accelerating structure

    International Nuclear Information System (INIS)

    The travelling wave (TW) disk-loaded accelerating structure is one of the key components in normal conducting (NC) linear accelerators, and has been studied for many years. In the design process, usually after the dimensions of each cell and the two couplers are finalized, the structure is fabricated and tuned, and then the whole structure RF characteristics are measured by using a vector network analyzer. Before fabrication, the whole structure characteristics (including RF, thermal and structural ones) are less simulated due to the limited capability of currently available computers. In this paper, we described a method for performing RF-thermal-structural-RF coupled analysis on a TW disk-loaded structure using only one PC. In order to validate our method, we first analyzed and compared our RF simulation results on the 3 m long BEPC Ⅱ structure with the corresponding experimental results, which shows very good consistency. Finally, the RF-thermal-structure-RF coupled analysis results on the 1.35 m long NSC KIPT linac accelerating structure are presented. (authors)

  2. Integral Equation Analysis of EM Scattering from Multilayered Metallic Photonic Crystal Accelerated with Adaptive Cross Approximation

    Directory of Open Access Journals (Sweden)

    Jianxun Su

    2015-01-01

    Full Text Available A space-domain integral equation method accelerated with adaptive cross approximation (ACA is presented for the fast and accurate analysis of electromagnetic (EM scattering from multilayered metallic photonic crystal (MPC. The method directly solves for the electric field in order to easily enable the periodic boundary condition (PBC in the spatial domain. The ACA is a purely algebraic method allowing the compression of fully populated matrices; hence, its formulation and implementation are independent of integral equation kernel (Green’s function. Therefore, the ACA is very well suited for accelerating integral equation analysis of periodic structure with the integral kernel of the periodic Green’s function (PGF. The computation of the spatial-domain periodic Green’s function (PGF is accelerated by the modified Ewald transformation, such that the multilayered periodic structure can be analyzed efficiently and accurately. An effective interpolation method is also proposed to fast compute the periodic Green’s function, which can greatly reduce the time of matrix filling. Numerical examples show that the proposed method can greatly save the frequency sweep time for multilayered periodic structure.

  3. Automated detection and analysis of particle beams in laser-plasma accelerator simulations

    Energy Technology Data Exchange (ETDEWEB)

    Ushizima, Daniela Mayumi; Geddes, C.G.; Cormier-Michel, E.; Bethel, E. Wes; Jacobsen, J.; Prabhat, ,; R.ubel, O.; Weber, G,; Hamann, B.

    2010-05-21

    Numerical simulations of laser-plasma wakefield (particle) accelerators model the acceleration of electrons trapped in plasma oscillations (wakes) left behind when an intense laser pulse propagates through the plasma. The goal of these simulations is to better understand the process involved in plasma wake generation and how electrons are trapped and accelerated by the wake. Understanding of such accelerators, and their development, offer high accelerating gradients, potentially reducing size and cost of new accelerators. One operating regime of interest is where a trapped subset of electrons loads the wake and forms an isolated group of accelerated particles with low spread in momentum and position, desirable characteristics for many applications. The electrons trapped in the wake may be accelerated to high energies, the plasma gradient in the wake reaching up to a gigaelectronvolt per centimeter. High-energy electron accelerators power intense X-ray radiation to terahertz sources, and are used in many applications including medical radiotherapy and imaging. To extract information from the simulation about the quality of the beam, a typical approach is to examine plots of the entire dataset, visually determining the adequate parameters necessary to select a subset of particles, which is then further analyzed. This procedure requires laborious examination of massive data sets over many time steps using several plots, a routine that is unfeasible for large data collections. Demand for automated analysis is growing along with the volume and size of simulations. Current 2D LWFA simulation datasets are typically between 1GB and 100GB in size, but simulations in 3D are of the order of TBs. The increase in the number of datasets and dataset sizes leads to a need for automatic routines to recognize particle patterns as particle bunches (beam of electrons) for subsequent analysis. Because of the growth in dataset size, the application of machine learning techniques for

  4. Multiphysics Analysis of Frequency Detuning in Superconducting RF Cavities for Proton Particle Accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Awida, M. H. [Fermilab; Gonin, I. [Fermilab; Passarelli, D. [Fermilab; Sukanov, A. [Fermilab; Khabiboulline, T. [Fermilab; Yakovlev, V. [Fermilab

    2016-01-22

    Multiphysics analyses for superconducting cavities are essential in the course of cavity design to meet stringent requirements on cavity frequency detuning. Superconducting RF cavities are the core accelerating elements in modern particle accelerators whether it is proton or electron machine, as they offer extremely high quality factors thus reducing the RF losses per cavity. However, the superior quality factor comes with the challenge of controlling the resonance frequency of the cavity within few tens of hertz bandwidth. In this paper, we investigate how the multiphysics analysis plays a major role in proactively minimizing sources of frequency detuning, specifically; microphonics and Lorentz Force Detuning (LFD) in the stage of RF design of the cavity and mechanical design of the niobium shell and the helium vessel.

  5. Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder.

    Science.gov (United States)

    Dellus-Gur, Eynat; Elias, Mikael; Caselli, Emilia; Prati, Fabio; Salverda, Merijn L M; de Visser, J Arjan G M; Fraser, James S; Tawfik, Dan S

    2015-07-17

    Epistasis is a key factor in evolution since it determines which combinations of mutations provide adaptive solutions and which mutational pathways toward these solutions are accessible by natural selection. There is growing evidence for the pervasiveness of sign epistasis--a complete reversion of mutational effects, particularly in protein evolution--yet its molecular basis remains poorly understood. We describe the structural basis of sign epistasis between G238S and R164S, two adaptive mutations in TEM-1 β-lactamase--an enzyme that endows antibiotics resistance. Separated by 10 Å, these mutations initiate two separate trajectories toward increased hydrolysis rates and resistance toward second and third-generation cephalosporins antibiotics. Both mutations allow the enzyme's active site to adopt alternative conformations and accommodate the new antibiotics. By solving the corresponding set of crystal structures, we found that R164S causes local disorder whereas G238S induces discrete conformations. When combined, the mutations in 238 and 164 induce local disorder whereby nonproductive conformations that perturb the enzyme's catalytic preorganization dominate. Specifically, Asn170 that coordinates the deacylating water molecule is misaligned, in both the free form and the inhibitor-bound double mutant. This local disorder is not restored by stabilizing global suppressor mutations and thus leads to an evolutionary cul-de-sac. Conformational dynamism therefore underlines the reshaping potential of protein's structures and functions but also limits protein evolvability because of the fragility of the interactions networks that maintain protein structures.

  6. Analysis of ballistic transport in nanoscale devices by using an accelerated finite element contact block reduction approach

    Science.gov (United States)

    Li, H.; Li, G.

    2014-08-01

    An accelerated Finite Element Contact Block Reduction (FECBR) approach is presented for computational analysis of ballistic transport in nanoscale electronic devices with arbitrary geometry and unstructured mesh. Finite element formulation is developed for the theoretical CBR/Poisson model. The FECBR approach is accelerated through eigen-pair reduction, lead mode space projection, and component mode synthesis techniques. The accelerated FECBR is applied to perform quantum mechanical ballistic transport analysis of a DG-MOSFET with taper-shaped extensions and a DG-MOSFET with Si/SiO2 interface roughness. The computed electrical transport properties of the devices obtained from the accelerated FECBR approach and associated computational cost as a function of system degrees of freedom are compared with those obtained from the original CBR and direct inversion methods. The performance of the accelerated FECBR in both its accuracy and efficiency is demonstrated.

  7. Analysis of ballistic transport in nanoscale devices by using an accelerated finite element contact block reduction approach

    International Nuclear Information System (INIS)

    An accelerated Finite Element Contact Block Reduction (FECBR) approach is presented for computational analysis of ballistic transport in nanoscale electronic devices with arbitrary geometry and unstructured mesh. Finite element formulation is developed for the theoretical CBR/Poisson model. The FECBR approach is accelerated through eigen-pair reduction, lead mode space projection, and component mode synthesis techniques. The accelerated FECBR is applied to perform quantum mechanical ballistic transport analysis of a DG-MOSFET with taper-shaped extensions and a DG-MOSFET with Si/SiO2 interface roughness. The computed electrical transport properties of the devices obtained from the accelerated FECBR approach and associated computational cost as a function of system degrees of freedom are compared with those obtained from the original CBR and direct inversion methods. The performance of the accelerated FECBR in both its accuracy and efficiency is demonstrated

  8. Will solid-state drives accelerate your bioinformatics? In-depth profiling, performance analysis and beyond.

    Science.gov (United States)

    Lee, Sungmin; Min, Hyeyoung; Yoon, Sungroh

    2016-07-01

    A wide variety of large-scale data have been produced in bioinformatics. In response, the need for efficient handling of biomedical big data has been partly met by parallel computing. However, the time demand of many bioinformatics programs still remains high for large-scale practical uses because of factors that hinder acceleration by parallelization. Recently, new generations of storage devices have emerged, such as NAND flash-based solid-state drives (SSDs), and with the renewed interest in near-data processing, they are increasingly becoming acceleration methods that can accompany parallel processing. In certain cases, a simple drop-in replacement of hard disk drives by SSDs results in dramatic speedup. Despite the various advantages and continuous cost reduction of SSDs, there has been little review of SSD-based profiling and performance exploration of important but time-consuming bioinformatics programs. For an informative review, we perform in-depth profiling and analysis of 23 key bioinformatics programs using multiple types of devices. Based on the insight we obtain from this research, we further discuss issues related to design and optimize bioinformatics algorithms and pipelines to fully exploit SSDs. The programs we profile cover traditional and emerging areas of importance, such as alignment, assembly, mapping, expression analysis, variant calling and metagenomics. We explain how acceleration by parallelization can be combined with SSDs for improved performance and also how using SSDs can expedite important bioinformatics pipelines, such as variant calling by the Genome Analysis Toolkit and transcriptome analysis using RNA sequencing. We hope that this review can provide useful directions and tips to accompany future bioinformatics algorithm design procedures that properly consider new generations of powerful storage devices. PMID:26330577

  9. Benchmarking study and its application for shielding analysis of large accelerator facilities

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Hee-Seock; Kim, Dong-hyun; Oranj, Leila Mokhtari; Oh, Joo-Hee; Lee, Arim; Jung, Nam-Suk [POSTECH, Pohang (Korea, Republic of)

    2015-10-15

    Shielding Analysis is one of subjects which are indispensable to construct large accelerator facility. Several methods, such as the Monte Carlo, discrete ordinate, and simplified calculation, have been used for this purpose. The calculation precision is overcome by increasing the trial (history) numbers. However its accuracy is still a big issue in the shielding analysis. To secure the accuracy in the Monte Carlo calculation, the benchmarking study using experimental data and the code comparison are adopted fundamentally. In this paper, the benchmarking result for electrons, protons, and heavy ions are presented as well as the proper application of the results is discussed. The benchmarking calculations, which are indispensable in the shielding analysis were performed for different particles: proton, heavy ion and electron. Four different multi-particle Monte Carlo codes, MCNPX, FLUKA, PHITS, and MARS, were examined for higher energy range equivalent to large accelerator facility. The degree of agreement between the experimental data including the SINBAD database and the calculated results were estimated in the terms of secondary neutron production and attenuation through the concrete and iron shields. The degree of discrepancy and the features of Monte Carlo codes were investigated and the application way of the benchmarking results are discussed in the view of safety margin and selecting the code for the shielding analysis. In most cases, the tested Monte Carlo codes give proper credible results except of a few limitation of each codes.

  10. Preliminary Safety Analysis Report (PSAR), The NSLS 200 MeV Linear Electron Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Blumberg, L.N.; Ackerman, A.I.; Dickinson, T.; Heese, R.N.; Larson, R.A.; Neuls, C.W.; Pjerov, S.; Sheehan, J.F.

    1993-06-15

    The radiological, fire and electrical hazards posed by a 200 MeV electron Linear Accelerator, which the NSLS Department will install and commission within a newly assembled structure, are addressed in this Preliminary Safety Analysis Report. Although it is clear that this accelerator is intended to be the injector for a future experimental facility, we address only the Linac in the present PSAR since neither the final design nor the operating characteristics of the experimental facility are known at the present time. The fire detection and control system to be installed in the building is judged to be completely adequate in terms of the marginal hazard presented - no combustible materials other than the usual cabling associated with such a facility have been identified. Likewise, electrical hazards associated with power supplies for the beam transport magnets and accelerator components such as the accelerator klystrons and electron gun are classified as marginal in terms of potential personnel injury, cost of equipment lost, program downtime and public impact perceptions as defined in the BNL Environmental Safety and Health Manual and the probability of occurrence is deemed to be remote. No unusual features have been identified for the power supplies or electrical distribution system, and normal and customary electrical safety standards as practiced throughout the NSLS complex and the Laboratory are specified in this report. The radiation safety hazards are similarly judged to be marginal in terms of probability of occurrence and potential injury consequences since, for the low intensity operation proposed - a factor of 25 less than the maximum Linac capability specified by the vendor - the average beam power is only 0.4 watts. The shielding specifications given in this report will give adequate protection to both the general public and nonradiation workers in areas adjacent to the building as well as radiation workers within the controlled access building.

  11. Accelerator and klystron (3). Klystron failure analysis, emission control, phase variation and maintenance

    International Nuclear Information System (INIS)

    Klystron failure analysis, emission control, phase variation and maintenance are described in this last paper of three successive series. Four main failure causes extracted from SLAC data of SLAC 1965-1982, and KEK data are explained in detail. Regarding to Klystron life, KEKs dip test which is a quick way to examine the emission is explained. The phase variation should be small for accelerator and good stability on applied voltage and cooling water temperature are essential. Klystron maintenance which is important for the effective use is explained. (author)

  12. Elemental analysis of concrete samples using an accelerator-based PGNAA setup

    Science.gov (United States)

    Naqvi, A. A.; Nagadi, M. M.; Baghabra Al-Amoudi, Omar S.

    2004-09-01

    Elemental analysis of concrete samples was carried out using an accelerator-based prompt gamma ray neutron activation analysis (PGNAA) setup. The gamma rays were produced via the capture of thermal neutron in the concrete sample. The prompt gamma ray yield was measured for 12 cm long concrete samples as a function of sample radius over a range of 6-11.5 cm radii. The optimum yield of the prompt gamma rays from the concrete sample was measured from a sample with 11.5 cm radius. The gamma ray yield was also calculated for 12 cm long concrete samples with 6-11.5 cm radius using Monte Carlo simulations. The experimental results were in excellent agreement with the calculated yield of the prompt gamma rays from the samples. Result of this study has shown the useful application of an accelerator-based PGNAA setup in elemental analysis of concrete sample. The facility can be further used to determine the chloride and sulfate concentrations in concrete samples for corrosion studies of reinforcement steel in concrete structures.

  13. Elemental analysis of concrete samples using an accelerator-based PGNAA setup

    International Nuclear Information System (INIS)

    Elemental analysis of concrete samples was carried out using an accelerator-based prompt gamma ray neutron activation analysis (PGNAA) setup. The gamma rays were produced via the capture of thermal neutron in the concrete sample. The prompt gamma ray yield was measured for 12 cm long concrete samples as a function of sample radius over a range of 6-11.5 cm radii. The optimum yield of the prompt gamma rays from the concrete sample was measured from a sample with 11.5 cm radius. The gamma ray yield was also calculated for 12 cm long concrete samples with 6-11.5 cm radius using Monte Carlo simulations. The experimental results were in excellent agreement with the calculated yield of the prompt gamma rays from the samples. Result of this study has shown the useful application of an accelerator-based PGNAA setup in elemental analysis of concrete sample. The facility can be further used to determine the chloride and sulfate concentrations in concrete samples for corrosion studies of reinforcement steel in concrete structures

  14. Using Uncertainty Analysis to Guide the Development of Accelerated Stress Tests (Presentation)

    Energy Technology Data Exchange (ETDEWEB)

    Kempe, M.

    2014-03-01

    Extrapolation of accelerated testing to the long-term results expected in the field has uncertainty associated with the acceleration factors and the range of possible stresses in the field. When multiple stresses (such as temperature and humidity) can be used to increase the acceleration, the uncertainty may be reduced according to which stress factors are used to accelerate the degradation.

  15. Accelerating policy decisions to adopt haemophilus influenzae type B vaccine: a global, multivariable analysis.

    Directory of Open Access Journals (Sweden)

    Jessica C Shearer

    2010-03-01

    Full Text Available BACKGROUND: Adoption of new and underutilized vaccines by national immunization programs is an essential step towards reducing child mortality. Policy decisions to adopt new vaccines in high mortality countries often lag behind decisions in high-income countries. Using the case of Haemophilus influenzae type b (Hib vaccine, this paper endeavors to explain these delays through the analysis of country-level economic, epidemiological, programmatic and policy-related factors, as well as the role of the Global Alliance for Vaccines and Immunisation (GAVI Alliance. METHODS AND FINDINGS: Data for 147 countries from 1990 to 2007 were analyzed in accelerated failure time models to identify factors that are associated with the time to decision to adopt Hib vaccine. In multivariable models that control for Gross National Income, region, and burden of Hib disease, the receipt of GAVI support speeded the time to decision by a factor of 0.37 (95% CI 0.18-0.76, or 63%. The presence of two or more neighboring country adopters accelerated decisions to adopt by a factor of 0.50 (95% CI 0.33-0.75. For each 1% increase in vaccine price, decisions to adopt are delayed by a factor of 1.02 (95% CI 1.00-1.04. Global recommendations and local studies were not associated with time to decision. CONCLUSIONS: This study substantiates previous findings related to vaccine price and presents new evidence to suggest that GAVI eligibility is associated with accelerated decisions to adopt Hib vaccine. The influence of neighboring country decisions was also highly significant, suggesting that approaches to support the adoption of new vaccines should consider supply- and demand-side factors.

  16. Wavelet analysis of head acceleration response under dirac excitation for early oedema detection.

    Science.gov (United States)

    Kostopoulos, V; Loutas, T H; Derdas, C; Douzinas, E

    2008-04-01

    The present work deals with the application of an innovative in-house developed wavelet-based methodology for the analysis of the acceleration responses of a human head complex model as a simulated diffused oedema progresses. The human head complex has been modeled as a structure consisting of three confocal prolate spheroids, whereas the three defined regions by the system of spheroids, from the outside to the inside, represent the scull, the region of cerebrospinal fluid, and the brain tissue. A Dirac-like pulse has been used to excite the human head complex model and the acceleration response of the system has been calculated and analyzed via the wavelet-based methodology. For the purpose of the present analysis, a wave propagation commercial finite element code, LS-DYNA 3D, has been used. The progressive diffused oedema was modeled via consecutive increases in brain volume accompanied by a decrease in brain density. It was shown that even a small increase in brain volume (at the level of 0.5%) can be identified by the effect it has on the vibration characteristics of the human head complex. More precisely, it was found that for some of the wavelet decomposition levels, the energy content changes monotonically as the brain volume increases, thus providing a useful index of monitoring an oncoming brain oedema before any brain damage appears due to uncontrolled intracranial hypertension. For the purpose of the present work and for the levels of brain volume increase considered in the present analysis, no pressure increase was assumed into the cranial vault and, associatively, no brain compliance variation. PMID:18412504

  17. An end to endless forms: epistasis, phenotype distribution bias, and nonuniform evolution.

    Directory of Open Access Journals (Sweden)

    Elhanan Borenstein

    2008-10-01

    Full Text Available Studies of the evolution of development characterize the way in which gene regulatory dynamics during ontogeny constructs and channels phenotypic variation. These studies have identified a number of evolutionary regularities: (1 phenotypes occupy only a small subspace of possible phenotypes, (2 the influence of mutation is not uniform and is often canalized, and (3 a great deal of morphological variation evolved early in the history of multicellular life. An important implication of these studies is that diversity is largely the outcome of the evolution of gene regulation rather than the emergence of new, structural genes. Using a simple model that considers a generic property of developmental maps-the interaction between multiple genetic elements and the nonlinearity of gene interaction in shaping phenotypic traits-we are able to recover many of these empirical regularities. We show that visible phenotypes represent only a small fraction of possibilities. Epistasis ensures that phenotypes are highly clustered in morphospace and that the most frequent phenotypes are the most similar. We perform phylogenetic analyses on an evolving, developmental model and find that species become more alike through time, whereas higher-level grades have a tendency to diverge. Ancestral phenotypes, produced by early developmental programs with a low level of gene interaction, are found to span a significantly greater volume of the total phenotypic space than derived taxa. We suggest that early and late evolution have a different character that we classify into micro- and macroevolutionary configurations. These findings complement the view of development as a key component in the production of endless forms and highlight the crucial role of development in constraining biotic diversity and evolutionary trajectories.

  18. Mitonuclear Epistasis for Development Time and Its Modification by Diet in Drosophila.

    Science.gov (United States)

    Mossman, Jim A; Biancani, Leann M; Zhu, Chen-Tseh; Rand, David M

    2016-05-01

    Mitochondrial (mtDNA) and nuclear genes have to operate in a coordinated manner to maintain organismal function, and the regulation of this homeostasis presents a substantial source of potential epistatic (G × G) interactions. How these interactions shape the fitness landscape is poorly understood. Here we developed a novel mitonuclear epistasis model, using selected strains of the Drosophila Genetic Reference Panel (DGRP) and mitochondrial genomes from within Drosophila melanogaster and D. simulans to test the hypothesis that mtDNA × nDNA interactions influence fitness. In total we built 72 genotypes (12 nuclear backgrounds × 6 mtDNA haplotypes, with 3 from each species) to dissect the relationship between genotype and phenotype. Each genotype was assayed on four food environments. We found considerable variation in several phenotypes, including development time and egg-to-adult viability, and this variation was partitioned into genetic (G), environmental (E), and higher-order (G × G, G × E, and G × G × E) components. Food type had a significant impact on development time and also modified mitonuclear epistases, evidencing a broad spectrum of G × G × E across these genotypes. Nuclear background effects were substantial, followed by mtDNA effects and their G × G interaction. The species of mtDNA haplotype had negligible effects on phenotypic variation and there was no evidence that mtDNA variation has different effects on male and female fitness traits. Our results demonstrate that mitonuclear epistases are context dependent, suggesting the selective pressure acting on mitonuclear genotypes may vary with food environment in a genotype-specific manner. PMID:26966258

  19. On the Impact of a Quadratic Acceleration Term in the Analysis of Position Time Series

    Science.gov (United States)

    Bogusz, Janusz; Klos, Anna; Bos, Machiel Simon; Hunegnaw, Addisu; Teferle, Felix Norman

    2016-04-01

    The analysis of Global Navigation Satellite System (GNSS) position time series generally assumes that each of the coordinate component series is described by the sum of a linear rate (velocity) and various periodic terms. The residuals, the deviations between the fitted model and the observations, are then a measure of the epoch-to-epoch scatter and have been used for the analysis of the stochastic character (noise) of the time series. Often the parameters of interest in GNSS position time series are the velocities and their associated uncertainties, which have to be determined with the highest reliability. It is clear that not all GNSS position time series follow this simple linear behaviour. Therefore, we have added an acceleration term in the form of a quadratic polynomial function to the model in order to better describe the non-linear motion in the position time series. This non-linear motion could be a response to purely geophysical processes, for example, elastic rebound of the Earth's crust due to ice mass loss in Greenland, artefacts due to deficiencies in bias mitigation models, for example, of the GNSS satellite and receiver antenna phase centres, or any combination thereof. In this study we have simulated 20 time series with different stochastic characteristics such as white, flicker or random walk noise of length of 23 years. The noise amplitude was assumed at 1 mm/y-/4. Then, we added the deterministic part consisting of a linear trend of 20 mm/y (that represents the averaged horizontal velocity) and accelerations ranging from minus 0.6 to plus 0.6 mm/y2. For all these data we estimated the noise parameters with Maximum Likelihood Estimation (MLE) using the Hector software package without taken into account the non-linear term. In this way we set the benchmark to then investigate how the noise properties and velocity uncertainty may be affected by any un-modelled, non-linear term. The velocities and their uncertainties versus the accelerations for

  20. Final safety analysis report for the Ground Test Accelerator (GTA), Phase 2

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-10-01

    This document is the first volume of a 3 volume safety analysis report on the Ground Test Accelerator (GTA). The GTA program at the Los Alamos National Laboratory (LANL) is the major element of the national Neutral Particle Beam (NPB) program, which is supported by the Strategic Defense Initiative Office (SDIO). A principal goal of the national NPB program is to assess the feasibility of using hydrogen and deuterium neutral particle beams outside the Earth`s atmosphere. The main effort of the NPB program at Los Alamos concentrates on developing the GTA. The GTA is classified as a low-hazard facility, except for the cryogenic-cooling system, which is classified as a moderate-hazard facility. This volume consists of an introduction, summary/conclusion, site description and assessment, description of facility, and description of operation.

  1. Final safety analysis report for the Ground Test Accelerator (GTA), Phase 2

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-10-01

    This document is the third volume of a 3 volume safety analysis report on the Ground Test Accelerator (GTA). The GTA program at the Los Alamos National Laboratory (LANL) is the major element of the national Neutral Particle Beam (NPB) program, which is supported by the Strategic Defense Initiative Office (SDIO). A principal goal of the national NPB program is to assess the feasibility of using hydrogen and deuterium neutral particle beams outside the Earth`s atmosphere. The main effort of the NPB program at Los Alamos concentrates on developing the GTA. The GTA is classified as a low-hazard facility, except for the cryogenic-cooling system, which is classified as a moderate-hazard facility. This volume consists of appendices C through U of the report

  2. Design, development and analysis of high voltage, high frequency transformer for dc accelerator application

    International Nuclear Information System (INIS)

    This paper covers the design, development and analysis of High Voltage, High Frequency Transformer for DC Accelerator application. Distributed capacitance, leakage inductance, skin effect and HV Insulation are major design challenges for this type of Transformer. A prototype of 30 kV - 0 - 30 kV, 10 kHz, 500 W output power, Ferrite Core Transformer have been designed, fabricated and tested. Spice simulations have been done for estimating transformer parameters. Effect of high frequency and requirement of HV Insulation have been studied and analyzed. The effects of Magnetic Core behaviour and its losses have been studied. Based on study and test result, distributed capacitance, leakage inductance, and Transformer scheme has been optimized for 30 kV - 0 - 30 kV, 10 kHz, 10 kW output power. (author)

  3. Accelerated Monte Carlo Simulation for Safety Analysis of the Advanced Airspace Concept

    Science.gov (United States)

    Thipphavong, David

    2010-01-01

    Safe separation of aircraft is a primary objective of any air traffic control system. An accelerated Monte Carlo approach was developed to assess the level of safety provided by a proposed next-generation air traffic control system. It combines features of fault tree and standard Monte Carlo methods. It runs more than one order of magnitude faster than the standard Monte Carlo method while providing risk estimates that only differ by about 10%. It also preserves component-level model fidelity that is difficult to maintain using the standard fault tree method. This balance of speed and fidelity allows sensitivity analysis to be completed in days instead of weeks or months with the standard Monte Carlo method. Results indicate that risk estimates are sensitive to transponder, pilot visual avoidance, and conflict detection failure probabilities.

  4. Reliability of segmental accelerations measured using a new wireless gait analysis system.

    Science.gov (United States)

    Kavanagh, Justin J; Morrison, Steven; James, Daniel A; Barrett, Rod

    2006-01-01

    The purpose of this study was to determine the inter- and intra-examiner reliability, and stride-to-stride reliability, of an accelerometer-based gait analysis system which measured 3D accelerations of the upper and lower body during self-selected slow, preferred and fast walking speeds. Eight subjects attended two testing sessions in which accelerometers were attached to the head, neck, lower trunk, and right shank. In the initial testing session, two different examiners attached the accelerometers and performed the same testing procedures. A single examiner repeated the procedure in a subsequent testing session. All data were collected using a new wireless gait analysis system, which features near real-time data transmission via a Bluetooth network. Reliability for each testing condition (4 locations, 3 directions, 3 speeds) was quantified using a waveform similarity statistic known as the coefficient of multiple determination (CMD). CMD's ranged from 0.60 to 0.98 across all test conditions and were not significantly different for inter-examiner (0.86), intra-examiner (0.87), and stride-to-stride reliability (0.86). The highest repeatability for the effect of location, direction and walking speed were for the shank segment (0.94), the vertical direction (0.91) and the fast walking speed (0.91), respectively. Overall, these results indicate that a high degree of waveform repeatability was obtained using a new gait system under test-retest conditions involving single and dual examiners. Furthermore, differences in acceleration waveform repeatability associated with the reapplication of accelerometers were small in relation to normal motor variability.

  5. The L(1/2) regularization approach for survival analysis in the accelerated failure time model.

    Science.gov (United States)

    Chai, Hua; Liang, Yong; Liu, Xiao-Ying

    2015-09-01

    The analysis of high-dimensional and low-sample size microarray data for survival analysis of cancer patients is an important problem. It is a huge challenge to select the significantly relevant bio-marks from microarray gene expression datasets, in which the number of genes is far more than the size of samples. In this article, we develop a robust prediction approach for survival time of patient by a L(1/2) regularization estimator with the accelerated failure time (AFT) model. The L(1/2) regularization could be seen as a typical delegate of L(q)(0regularization methods and it has shown many attractive features. In order to optimize the problem of the relevant gene selection in high-dimensional biological data, we implemented the L(1/2) regularized AFT model by the coordinate descent algorithm with a renewed half thresholding operator. The results of the simulation experiment showed that we could obtain more accurate and sparse predictor for survival analysis by the L(1/2) regularized AFT model compared with other L1 type regularization methods. The proposed procedures are applied to five real DNA microarray datasets to efficiently predict the survival time of patient based on a set of clinical prognostic factors and gene signatures.

  6. Thermal-hydraulic analysis of LBE spallation target for accelerator-driven systems

    Indian Academy of Sciences (India)

    Aniseh Ahmed Atef Abdalla; Jiyang Yu; Yongwel Yang

    2013-01-01

    In an accelerator-driven subcritical system (ADS), a high-performance spallation neutron source is used to feed the subcritical reactor. Neutron generation depends on the proton beam intensity. If the beam intensity is increased by a given factor, the number of generated neutrons will increase. The mechanism yielding a high rate of neutron production per energy is the spallation process, and this mechanism produces very high-energy deposition in the spallation target material. Producing a high rate of neutrons is accompanied by creation of problems of decay heat cooling and radiological protection. As a first step in designing a full-scale industrial ADS, a small-scale experimental ADS, which is similar to the European experimental ADS (XADS) is analysed. The analysis presented in this paper is based on lead–bismuth eutectic (LBE) cooled XADS-type experimental reactors, designed during the European experimental (PDS-XADS) project. Computational fluid dynamics analysis has been carried out for the spallation target. Steady-state behaviour and shear stress transport turbulence model with the automatic wall treatment were applied in the present analysis.

  7. Final safety analysis report for the Ground Test Accelerator (GTA), Phase 2

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-10-01

    This document is the second volume of a 3 volume safety analysis report on the Ground Test Accelerator (GTA). The GTA program at the Los Alamos National Laboratory (LANL) is the major element of the national Neutral Particle Beam (NPB) program, which is supported by the Strategic Defense Initiative Office (SDIO). A principal goal of the national NPB program is to assess the feasibility of using hydrogen and deuterium neutral particle beams outside the Earth`s atmosphere. The main effort of the NPB program at Los Alamos concentrates on developing the GTA. The GTA is classified as a low-hazard facility, except for the cryogenic-cooling system, which is classified as a moderate-hazard facility. This volume consists of failure modes and effects analysis; accident analysis; operational safety requirements; quality assurance program; ES&H management program; environmental, safety, and health systems critical to safety; summary of waste-management program; environmental monitoring program; facility expansion, decontamination, and decommissioning; summary of emergency response plan; summary plan for employee training; summary plan for operating procedures; glossary; and appendices A and B.

  8. THEORETICAL ANALYSIS AND EXPERIMENTAL VERIFICATION ON TERNARY-WAVES METHOD TO COMPILE ACCELERATED SPECTRA

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    The equivalent damage calculation formulae of fatigue crack formation and growth are established. In order tocompile the fatigue crack formation and growth accelerated load spectra, the main wave shapes and load sequence of theactual load spectrum are kept constant, and the carrier waves are cut off. And secondary waves are put together into newsecondary waves to shorten the test time according to the equivalent damage calculation formulae respectively. Then bythe fatigue cumulative damage calculation of the fatigue crack formation and growth accelerated load spectra, the onecorresponding to the bigger damage is determined as the fatigue accelerated test load spectrum. Therefore in the test pro-cess, the fatigue accelerated test spectrum may be applied till fatigue failure, the engineering fatigue crack length of full-scale structure need not be inspected, and the fatigue crack formation accelerated load spectrum need not be transferredinto the fatigue crack growth accelerated load spectrum. Finally, it is verified by tests of two kinds of specimens that thedamages of the specimens caused by the accelerated load spectra are near to those by the actual load spectra; namely, thetested life of actual load spectra is similar to that of accelerated load spectra. But the test time of accelerated load spectrais shortened by about three-quarters that of actual load spectra. From these tests, it is also found that the fatigue accelerat-ed test spectrum has an advantage over FALSTAFF spectra.

  9. Partial Dominance, Overdominance, Epistasis and QTL by Environment Interactions Contribute to Heterosis in Two Upland Cotton Hybrids.

    Science.gov (United States)

    Shang, Lianguang; Wang, Yumei; Cai, Shihu; Wang, Xiaocui; Li, Yuhua; Abduweli, Abdugheni; Hua, Jinping

    2016-03-01

    Based on two recombinant inbred line (RIL) populations, two corresponding backcross (BC) populations were constructed to elucidate the genetic basis of heterosis in Upland cotton (Gossypium hirsutum L.). The yield, and yield components, of these populations were evaluated in three environments. At the single-locus level, 78 and 66 quantitative trait loci (QTL) were detected using composite interval mapping in RIL and BC populations, respectively, and 29 QTL were identified based on mid-parental heterosis (MPH) data of two hybrids. Considering all traits together, a total of 50 (64.9%) QTL with partial dominance effect, and 27 (35.1%) QTL for overdominance effect were identified in two BC populations. At the two-locus level, 120 and 88 QTL with main effects (M-QTL), and 335 and 99 QTL involved in digenic interactions (E-QTL), were detected by inclusive composite interval mapping in RIL and BC populations, respectively. A large number of QTL by environment interactions (QEs) for M-QTL and E-QTL were detected in three environments. For most traits, average E-QTL explained a larger proportion of phenotypic variation than did M-QTL in two RIL populations and two BC populations. It was concluded that partial dominance, overdominance, epistasis, and QEs all contribute to heterosis in Upland cotton, and that partial dominance resulting from single loci and epistasis play a relatively more important role than other genetic effects in heterosis in Upland cotton. PMID:26715091

  10. The Statistical Power of Inclusive Composite Interval Mapping in Detecting Digenic Epistasis Showing Common F2 Segregation Ratios

    Institute of Scientific and Technical Information of China (English)

    Luyan Zhang; Huihui Li; Jiankang Wang

    2012-01-01

    Epistasis is a commonly observed genetic phenomenon and an important source of variation of complex traits,which could maintain additive variance and therefore assure the long-term genetic gain in breeding.Inclusive composite interval mapping (ICIM) is able to identify epistatic quantitative trait loci (QTLs) no matter whether the two interacting QTLs have any additive effects.In this article,we conducted a simulation study to evaluate detection power and false discovery rate (FDR) of ICIM epistatic mapping,by considering F2 and doubled haploid (DH) populations,different F2 segregation ratios and population sizes.Results indicated that estimations of QTL locations and effects were unbiased,and the detection power of epistatic mapping was largely affected by population size,heritability of epistasis,and the amount and distribution of genetic effects.When the same likelihood of odd (LOD) threshold was used,detection power of QTL was higher in F2 population than power in DH population; meanwhile FDR in F2 was also higher than that in DH.The increase of marker density from 10 cM to 5 cM led to similar detection power but higher FDR.In simulated populations,ICIM achieved better mapping results than multiple interval mapping (MIM) in estimation of QTL positions and effect.At the end,we gave epistatic mapping results of ICIM in one actual population in rice (Oryza sativa L.).

  11. Performance Analysis of Mimo Radar Waveform Using Accelerated Particle Swarm Optimization Algorithm

    Directory of Open Access Journals (Sweden)

    B. Roja Reddy

    2012-08-01

    Full Text Available The Accelerated Particle Swarm Optimization Algorithm is promoted to numerically design orthogonal Discrete Frequency Waveforms and Modified Discrete Frequency Waveforms (DFCWs with good correlation properties for MIMO radar. We employ Accelerated Particle Swarm Optimization algorithm (ACC_PSO, Particles of a swarm communicate good positions, velocity and accelerations to each other as well as dynamically adjust their own position, velocity and acceleration derived from the best of all particles. The simulation results show that the proposed algorithm is effective for the design of DFCWs signal used in MIMO radar.

  12. Multiphysics Analysis of the 2.5 MeV BNCT RFQ Accelerator

    CERN Document Server

    Xiaowen, Zhu; Kun, Zhu

    2016-01-01

    Boron Neutron Capture Therapy (BNCT), is an advanced cancer therapy that destroys the cancer tumors using the well-known Li(p,n)Be . Because of the highly selectively reaction between a boron and a neutron, BNCT is effective for rapidly spreading cancer, invasive carcinoma, such as head and neck cancer, melanoma, malignant brain tumors and so on. The PKU RFQ group proposes an RFQ based neutron source for BNCT application. The 162.5 MHz four-vane RFQ will accelerate 20-mA H+ from 35.0 keV to 2.50 MeV in CW mode, and delivers a neutron yield of 1.73*10^13 n/sec/cm^2. The thermal management will become the most important issues. The detailed multiphysics analysis of the BNCT RFQ will be studied, and the RFQ frequency shift during nominal operating condition is also predicted. The multiphysics analysis is performed by using the CST Multiphysics Model and verified with ANSYS Multiphysics.

  13. Steady-state responses of axially accelerating viscoelastic beams: Approximate analysis and numerical confirmation

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Nonlinear parametric vibration of axially accelerating viscoelastic beams is inves-tigated via an approximate analytical method with numerical confirmations. Based on nonlinear models of a finite-small-stretching slender beam moving at a speed with a periodic fluctuation, a solvability condition is established via the method of multiple scales for subharmonic resonance. Therefore, the amplitudes of steady-state periodic responses and their existence conditions are derived. The amplitudes of stable steady-state responses increase with the amplitude of the axial speed fluctuation, and decrease with the viscosity coefficient and the nonlinear coefficient. The minimum of the detuning parameter which causes the existence of a stable steady-state periodic response decreases with the amplitude of the axial speed fluctuation, and increases with the viscosity coefficient. Nu-merical solutions are sought via the finite difference scheme for a nonlinear par-tial-differential equation and a nonlinear integro-partial-differential equation. The calculation results qualitatively confirm the effects of the related parameters pre-dicted by the approximate analysis on the amplitude and the existence condition of the stable steady-state periodic responses. Quantitative comparisons demonstrate that the approximate analysis results have rather high precision.

  14. Accelerated leukocyte telomere erosion in schizophrenia: Evidence from the present study and a meta-analysis.

    Science.gov (United States)

    Rao, Shuquan; Kota, Lakshmi Narayanan; Li, Zongchang; Yao, Yao; Tang, Jinsong; Mao, Canquan; Jain, Sanjeev; Xu, Yong; Xu, Qi

    2016-08-01

    Human telomeres consist of tandem nucleotide repeats (TTAGGG) and associated proteins, and telomere length (TL) is reduced progressively with cell division over the lifespan. Telomere erosion might be accelerated or prevented to varying degrees when exposure to serious medical illnesses. In previous studies, an association between TL decrease and schizophrenia has been extensively reported; however, the results remain largely controversial. To further investigate TL in schizophrenia patients and reconcile this controversy, we first measured leucocyte TL (LTL) in our samples (52 paranoid schizophrenia, 89 non-paranoid patients and 120 controls), and then conducted a comprehensive meta-analysis of the existing results of LTL in patients of schizophrenia compared to healthy subjects. Totally, 11 studies encompassing 1243 patients of schizophrenia and 1274 controls were included in the final meta-analysis model. In our samples, significant reduction of LTL in paranoid schizophrenia was observed compared to controls (F = 50.88, P meta-analysis, random-effects model showed significant LTL decrease in patients of schizophrenia when compared to controls (Z = 2.07, P = 0.039, SMD = -0.48, 95% CI = -0.94 to -0.03). Moreover, a marginal decrease in LTL was observed in medicated patients (Z = 1.92, P = 0.055, SMD = -0.58, 95% CI = -1.18-0.01) and those patients with poor response to antipsychotics (Z = 1.76, P = 0.078, SMD = -0.60, 95% CI = -1.27-0.07). In conclusion, we observed significant reduction of LTL in individuals with schizophrenia compared with controls. However, all the studies included in the meta-analysis were cross-sectional, and better controlled long-term studies are needed to replicate this result. PMID:27174400

  15. SHEsisEpi, a GPU-enhanced genome-wide SNP-SNP interaction scanning algorithm, efficiently reveals the risk genetic epistasis in bipolar disorder

    Institute of Scientific and Technical Information of China (English)

    Xiaohan Hu; Qiang Liu; Zhao Zhang; Zhiqiang Li; Shilin Wang; Lin He; Yongyong Shi

    2010-01-01

    @@ Dear Editor, We developed a GPU-based analytical method, named as SHEsisEpi, which purely focuses on risk epistasis in a genome-wide association study (GWAS) of complex traits, excluding the contamination of marginal effects caused by single-locus association. We analyzed the Wellcome Trust Case Control Consortium's (WTCCC)GWAS data of bipolar disorder (BPD) with 500K SNPs.

  16. Discovery by the Epistasis Project of an epistatic interaction between the GSTM3 gene and the HHEX/IDE/KIF11 locus in the risk of Alzheimer's disease

    NARCIS (Netherlands)

    J.M. Bullock (James); C. Medway (Christopher); M. Cortina-Borja (Mario); J.C. Turton (James); J.A. Prince (Jonathan); C.A. Ibrahim-Verbaas (Carla); M. Schuur (Maaike); M.M.B. Breteler (Monique); C.M. van Duijn (Cock); P.G. Kehoe (Patrick); R. Barber (Rachel); E. Coto (Eliecer); V. Alvarez (Victoria); P. Deloukas (Panagiotis); N. Hammond (Naomi); O. Combarros (Onofre); I. Mateo (Ignacio); D.R. Warden (Donald); M.G. Lehmann (Michael); O. Belbin (Olivia); K. Brown (Kristelle); G.K. Wilcock (Gordon); R. Heun (Reinhard); H. Kölsch (Heike); A.D. Smith; D.J. Lehmann (Donald); K. Morgan (Kevin)

    2013-01-01

    textabstractDespite recent discoveries in the genetics of sporadic Alzheimer's disease, there remains substantial " hidden heritability." It is thought that some of this missing heritability may be because of gene-gene, i.e., epistatic, interactions. We examined potential epistasis between 110 candi

  17. Computer codes for particle accelerator design and analysis: A compendium. Second edition

    International Nuclear Information System (INIS)

    The design of the next generation of high-energy accelerators will probably be done as an international collaborative efforts and it would make sense to establish, either formally or informally, an international center for accelerator codes with branches for maintenance, distribution, and consultation at strategically located accelerator centers around the world. This arrangement could have at least three beneficial effects. It would cut down duplication of effort, provide long-term support for the best codes, and provide a stimulating atmosphere for the evolution of new codes. It does not take much foresight to see that the natural evolution of accelerator design codes is toward the development of so-called Expert Systems, systems capable of taking design specifications of future accelerators and producing specifications for optimized magnetic transport and acceleration components, making a layout, and giving a fairly impartial cost estimate. Such an expert program would use present-day programs such as TRANSPORT, POISSON, and SUPERFISH as tools in the optimization process. Such a program would also serve to codify the experience of two generations of accelerator designers before it is lost as these designers reach retirement age. This document describes 203 codes that originate from 10 countries and are currently in use. The authors feel that this compendium will contribute to the dialogue supporting the international collaborative effort that is taking place in the field of accelerator physics today

  18. Numerical Analysis of MHD Accelerator with Non-Equilibrium Air Plasma

    Institute of Scientific and Technical Information of China (English)

    M. ANWARI; H. H. QAZI; SUKARSAN; N. HARADA

    2012-01-01

    Magnetohydrodynamic (MHD) accelerator is proposed as a next generation propulsion system. It can be used to increase the performance of a propulsion system. The objective of this study is to investigate the performance of MHD accelerator using non-equilibrium air plasma as working gas. In this study, the fundamental performance of MHD accelerator such as flow performance and electrical performance is evaluated at different levels of applied magnetic field using I-D numerical simulation. The numerical simulation is developed based on a set of differential equations with MHD approximation. To solve this set of differential equations the MacCormack scheme is used. A specified channel designed and developed at NASA Marshall Space Flight Centre is used in the numerical simulation. The composition of the simulated air plasma consists of seven species, namely, N2, N, O2, O, NO, NO+, and e-. The performance of the non-equilibrium MHD accelerator is also compared with the equilibrium MHD accelerator.

  19. Structural Performance Assessment Based on Statistical and Wavelet Analysis of Acceleration Measurements of a Building during an Earthquake

    OpenAIRE

    Mosbeh R. Kaloop; Jong Wan Hu; Mohamed A. Sayed; Jiyoung Seong

    2016-01-01

    This study introduces the analysis of structural health monitoring (SHM) system based on acceleration measurements during an earthquake. The SHM system is applied to assess the performance investigation of the administration building in Seoul National University of Education, South Korea. The statistical and wavelet analysis methods are applied to investigate and assess the performance of the building during an earthquake shaking which took place on March 31, 2014. The results indicate that (...

  20. Accelerated expansion from ghost-free bigravity: a statistical analysis with improved generality

    CERN Document Server

    Akrami, Yashar; Sandstad, Marit

    2012-01-01

    We study the background cosmology of the ghost-free, bimetric theory of gravity. We perform an extensive statistical analysis of the model using both frequentist and Bayesian frameworks and employ the constraints on the expansion history of the Universe from the observations of supernovae, the cosmic microwave background and the large scale structure to estimate the model's parameters and test the goodness of the fits. We explore the parameter space of the model with nested sampling to find the best-fit chi-square, obtain the Bayesian evidence, and compute the marginalized posteriors and mean likelihoods. We mainly focus on a class of sub-models with no explicit cosmological constant term to assess the ability of the theory to dynamically cause a late-time accelerated expansion. The model behaves as standard gravity without a cosmological constant at early times, with an emergent extra contribution to the energy density that converges to a cosmological constant in the far future. The model can in most cases y...

  1. A new convergence analysis and perturbation resilience of some accelerated proximal forward-backward algorithms with errors

    CERN Document Server

    Reem, Daniel

    2015-01-01

    Many problems in science and engineering involve, as part of their solution process, the consideration of a separable function which is the sum of two convex functions, one of them possibly non-smooth. Recently a few works have discussed inexact versions of several accelerated proximal methods aiming at solving this minimization problem. This paper shows that inexact versions of a method of Beck and Teboulle (FISTA) preserve, in a Hilbert space setting, the same (non-asymptotic) rate of convergence under some assumptions on the decay rate of the error terms. The notion of inexactness discussed here seems to be rather simple, but, interestingly, when comparing to related works, similar decay rates of the errors terms yield similar convergence rates. The derivation sheds some light on the somewhat mysterious origin of some parameters which appear in various accelerated methods. A consequence of the analysis is that the accelerated method is perturbation resilient, making it suitable, in principle, for the super...

  2. Advanced accelerators

    International Nuclear Information System (INIS)

    This report discusses the suitability of four novel particle acceleration technologies for multi-TeV particle physics machines: laser driven linear accelerators (linac), plasma beat-wave devices, plasma wakefield devices, and switched power and cavity wakefield linacs. The report begins with the derivation of beam parameters practical for multi-TeV devices. Electromagnetic field breakdown of materials is reviewed. The two-beam accelerator scheme for using a free electron laser as the driver is discussed. The options recommended and the conclusions reached reflect the importance of cost. We recommend that more effort be invested in achieving a self-consistent range of TeV accelerator design parameters. Beat-wave devices have promise for 1-100 GeV applications and, while not directly scalable to TeV designs, the current generation of ideas are encouraging for the TeV regime. In particular, surfatrons, finite-angle optical mixing devices, plasma grating accelerator, and the Raman forward cascade schemes all deserve more complete analysis. The exploitation of standard linac geometry operated in an unconventional mode is in a phase of rapid evolution. While conceptual projects abound, there are no complete designs. We recommend that a fraction of sponsored research be devoted to this approach. Wakefield devices offer a great deal of potential; trades among their benefits and constraints are derived and discussed herein. The study of field limitation processes has received inadequate attention; this limits experiment designers. The costs of future experiments are such that investment in understanding these processes is prudent. 34 refs., 12 figs., 3 tabs

  3. Statistical analysis of the acceleration of Baltic mean sea-level rise, 1900-2012

    Directory of Open Access Journals (Sweden)

    Birgit Hünicke

    2016-07-01

    Full Text Available We analyse annual mean sea-level records from tide-gauges located in the Baltic and parts of the North Sea with the aim of detecting an acceleration of sea-level rise over the 20textsuperscript{th} and 21textsuperscript{st} centuries. The acceleration is estimated as a (1 fit to a polynomial of order two in time, (2 a long-term linear increase in the rates computed over gliding overlapping decadal time segments, and (3 a long-term increase of the annual increments of sea level.The estimation methods (1 and (2 prove to be more powerful in detecting acceleration when tested with sea-level records produced in global climate model simulations. These methods applied to the Baltic-Sea tide-gauges are, however, not powerful enough to detect a significant acceleration in most of individual records, although most estimated accelerations are positive. This lack of detection of statistically significant acceleration at the individual tide-gauge level can be due to the high-level of local noise and not necessarily to the absence of acceleration.The estimated accelerations tend to be stronger in the north and east of the Baltic Sea. Two hypothesis to explain this spatial pattern have been explored. One is that this pattern reflects the slow-down of the Glacial Isostatic Adjustment. However, a simple estimation of this effect suggests that this slow-down cannot explain the estimated acceleration. The second hypothesis is related to the diminishing sea-ice cover over the 20textsuperscript{th} century. The melting o of less saline and colder sea-ice can lead to changes in sea-level. Also, the melting of sea-ice can reduce the number of missing values in the tide-gauge records in winter, potentially influencing the estimated trends and acceleration of seasonal mean sea-level This hypothesis cannot be ascertained either since the spatial pattern of acceleration computed for winter and summer separately are very similar. The all-station-average-record displays an

  4. Analysis of Higher Order Modes in Large Superconducting Radio Frequency Accelerating Structures

    CERN Document Server

    Galek, Tomasz; Brackebusch, Korinna; Van Rienen, Ursula

    2015-01-01

    Superconducting radio frequency cavities used for accelerating charged particle beams are commonly used in accelerator facilities around the world. The design and optimization of modern superconducting RF cavities requires intensive numerical simulations. Vast number of operational parameters must be calculated to ensure appropriate functioning of the accelerating structures. In this study, we primarily focus on estimation and behavior of higher order modes in superconducting RF cavities connected in chains. To calculate large RF models the state-space concatenation scheme, an efficient hybrid method, is employed.

  5. Analysis of Transmitted Optical Spectrum Enabling Accelerated Testing of CPV Designs: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Miller, D. C.; Kempe, M. D.; Kennedy, C. E.; Kurtz, S. R.

    2009-07-01

    Reliability of CPV systems' materials is not well known; methods for accelerated UV testing have not been developed. UV and IR spectra transmitted through representative optical systems are evaluated.

  6. Partial Dominance, Overdominance and Epistasis as the Genetic Basis of Heterosis in Upland Cotton (Gossypium hirsutum L.)

    Science.gov (United States)

    Wang, Yumei; Hua, Jinping

    2015-01-01

    Determination of genetic basis of heterosis may promote hybrid production in Upland cotton (Gossypium hirsutum L.). This study was designed to explore the genetic mechanism of heterosis for yield and yield components in F2: 3 and F2: 4 populations derived from a hybrid ‘Xinza No. 1’. Replicated yield field trials of the progenies were conducted in 2008 and 2009. Phenotypic data analyses indicated overdominance in F1 for yield and yield components. Additive and dominance effects at single-locus level and digenic epistatic interactions at two-locus level were analyzed by 421 marker loci spanning 3814 cM of the genome. A total of 38 and 49 QTLs controlling yield and yield components were identified in F2: 3 and F2: 4 populations, respectively. Analyses of these QTLs indicated that the effects of partial dominance and overdominance contributed to heterosis in Upland cotton simultaneously. Most of the QTLs showed partial dominance whereas 13 QTLs showing overdominance in F2:3 population, and 19 QTLs showed overdominance in F2:4. Among them, 21 QTLs were common in both F2: 3 and F2: 4 populations. A large number of two-locus interactions for yield and yield components were detected in both generations. AA (additive × additive) epistasis accounted for majority portion of epistatic effects. Thirty three complementary two-locus homozygotes (11/22 and 22/11) were the best genotypes for AA interactions in terms of bolls per plant. Genotypes of double homozygotes, 11/22, 22/11 and 22/22, performed best for AD/DA interactions, while genotype of 11/12 performed best for DD interactions. These results indicated that (1) partial dominance and overdominance effects at single-locus level and (2) epistasis at two-locus level elucidated the genetic basis of heterosis in Upland cotton. PMID:26618635

  7. Linear Accelerators

    CERN Document Server

    Vretenar, M

    2014-01-01

    The main features of radio-frequency linear accelerators are introduced, reviewing the different types of accelerating structures and presenting the main characteristics aspects of linac beam dynamics.

  8. Neurocognitive outcome in brain metastases patients treated with accelerated-fractionation vs. accelerated-hyperfractionated radiotherapy: an analysis from Radiation Therapy Oncology Group Study 91-04

    International Nuclear Information System (INIS)

    Purpose: To evaluate neurocognitive outcome as measured by the Mini-Mental Status Examination (MMSE) among patients with unresectable brain metastases randomly assigned to accelerated fractionation (AF) vs. accelerated hyperfractionated (AH) whole-brain radiation therapy (WBRT). Methods and Materials: The Radiation Therapy Oncology Group (RTOG) accrued 445 patients with unresectable brain metastases to a Phase III comparison of AH (1.6 Gy b.i.d. to 54.4 Gy) vs. AF (3 Gy q.d. to 30 Gy). All had a KPS of ≥ 70 and a neurologic function status of 0-2. Three hundred fifty-nine patients had MMSEs performed and were eligible for this analysis. Changes in the MMSE were analyzed according to criteria previously defined in the literature. Results: The median survival was 4.5 months for both arms. The average change in MMSE at 2 and 3 months was a drop of 1.4 and 1.1, respectively, in the AF arm as compared to a drop of 0.7 and 1.3, respectively, in the AH arm (p=NS). Overall, 91 patients at 2 months and 23 patients at 3 months had both follow-up MMSE and computed tomography/magnetic resonance imaging documentation of the status of their brain metastases. When an analysis was performed taking into account control of brain metastases, a significant effect on MMSE was observed with time and associated proportional increase in uncontrolled brain metastases. At 2 months, the average change in MMSE score was a drop of 0.6 for those whose brain metastases were radiologically controlled as compared to a drop of 1.9 for those with uncontrolled brain metastases (p=0.47). At 3 months, the average change in MMSE score was a drop of 0.5 for those whose brain metastases were radiologically controlled as compared to a drop of 6.3 for those with uncontrolled brain metastases (p=0.02). Conclusion: Use of AH as compared to AF-WBRT was not associated with a significant difference in neurocognitive function as measured by MMSE in this patient population with unresectable brain metastases and

  9. Application of Failure Mode and Effects Analysis to Intraoperative Radiation Therapy Using Mobile Electron Linear Accelerators

    International Nuclear Information System (INIS)

    Purpose: Failure mode and effects analysis (FMEA) represents a prospective approach for risk assessment. A multidisciplinary working group of the Italian Association for Medical Physics applied FMEA to electron beam intraoperative radiation therapy (IORT) delivered using mobile linear accelerators, aiming at preventing accidental exposures to the patient. Methods and Materials: FMEA was applied to the IORT process, for the stages of the treatment delivery and verification, and consisted of three steps: 1) identification of the involved subprocesses; 2) identification and ranking of the potential failure modes, together with their causes and effects, using the risk probability number (RPN) scoring system, based on the product of three parameters (severity, frequency of occurrence and detectability, each ranging from 1 to 10); 3) identification of additional safety measures to be proposed for process quality and safety improvement. RPN upper threshold for little concern of risk was set at 125. Results: Twenty-four subprocesses were identified. Ten potential failure modes were found and scored, in terms of RPN, in the range of 42–216. The most critical failure modes consisted of internal shield misalignment, wrong Monitor Unit calculation and incorrect data entry at treatment console. Potential causes of failure included shield displacement, human errors, such as underestimation of CTV extension, mainly because of lack of adequate training and time pressures, failure in the communication between operators, and machine malfunctioning. The main effects of failure were represented by CTV underdose, wrong dose distribution and/or delivery, unintended normal tissue irradiation. As additional safety measures, the utilization of a dedicated staff for IORT, double-checking of MU calculation and data entry and finally implementation of in vivo dosimetry were suggested. Conclusions: FMEA appeared as a useful tool for prospective evaluation of patient safety in radiotherapy

  10. Automated combustion accelerator mass spectrometry for the analysis of biomedical samples in the low attomole range.

    Science.gov (United States)

    van Duijn, Esther; Sandman, Hugo; Grossouw, Dimitri; Mocking, Johannes A J; Coulier, Leon; Vaes, Wouter H J

    2014-08-01

    The increasing role of accelerator mass spectrometry (AMS) in biomedical research necessitates modernization of the traditional sample handling process. AMS was originally developed and used for carbon dating, therefore focusing on a very high precision but with a comparably low sample throughput. Here, we describe the combination of automated sample combustion with an elemental analyzer (EA) online coupled to an AMS via a dedicated interface. This setup allows direct radiocarbon measurements for over 70 samples daily by AMS. No sample processing is required apart from the pipetting of the sample into a tin foil cup, which is placed in the carousel of the EA. In our system, up to 200 AMS analyses are performed automatically without the need for manual interventions. We present results on the direct total (14)C count measurements in <2 μL human plasma samples. The method shows linearity over a range of 0.65-821 mBq/mL, with a lower limit of quantification of 0.65 mBq/mL (corresponding to 0.67 amol for acetaminophen). At these extremely low levels of activity, it becomes important to quantify plasma specific carbon percentages. This carbon percentage is automatically generated upon combustion of a sample on the EA. Apparent advantages of the present approach include complete omission of sample preparation (reduced hands-on time) and fully automated sample analysis. These improvements clearly stimulate the standard incorporation of microtracer research in the drug development process. In combination with the particularly low sample volumes required and extreme sensitivity, AMS strongly improves its position as a bioanalysis method. PMID:25033319

  11. Calcium Isolation from Large-Volume Human Urine Samples for 41Ca Analysis by Accelerator Mass Spectrometry

    Science.gov (United States)

    Miller, James J; Hui, Susanta K; Jackson, George S; Clark, Sara P; Einstein, Jane; Weaver, Connie M; Bhattacharyya, Maryka H

    2013-01-01

    Calcium oxalate precipitation is the first step in preparation of biological samples for 41Ca analysis by accelerator mass spectrometry. A simplified protocol for large-volume human urine samples was characterized, with statistically significant increases in ion current and decreases in interference. This large-volume assay minimizes cost and effort and maximizes time after 41Ca administration during which human samples, collected over a lifetime, provide 41Ca:Ca ratios that are significantly above background. PMID:23672965

  12. Neutron activation analysis with a deuteron accelerator. Application to the determination of copper in a Cu-Sn mixture

    International Nuclear Information System (INIS)

    Neutron activation analysis allows a rapid determination of trace elements. It has many applications in vegetal biology, agronomy, animal biology, medicine and industry. This report presents the different devices used (deuteron accelerator, 3H-Ti/Zr target, NaI(Tl) scintillation counter, Li-drifted Ge detector), the theory of the method and an application to the determination of copper in a copper-mixture

  13. Nuclear techniques for the analysis and dating of cultural heritage with the tandetron accelerator at the CEDAD

    Directory of Open Access Journals (Sweden)

    Lucio Calcagnile

    2014-12-01

    Full Text Available The Accelerator Mass Spectrometry technique for measuring carbon isotopes and dating artifacts, together with nuclear techniques of ion beam analysis are widely used in the field of cultural heritage owing to the great advantage of their being non-destructive. In Italy, CEDAD - CEntro Di DAtazione e Diagnostica of the University of Salento, with its tandetron accelerator of 3MV, has played a major role for over ten years, in studying materials of cultural assets requiring the determination of their elemental composition and determination of absolute chronology using radiocarbon. This study describes the Accelerator Mass Spectrometry technique used with the accelerator at CEDAD to determine age by means of radiocarbon and PIXE-PIGE techniques, and to determine elements, even in traces, present in materials. Some case studies carried out at CEDAD are reported, including those on the Riace Bronzes and Capitoline Wolf. The latter has been definitively dated to the Middle Ages, 17 centuries later than the previously attributed dating by historians. In addition, an important technical innovation is described, achieved within the framework of the IT@CHA Project enabling organic materials to be dated using only 10 μg of carbon.

  14. Monte Carlo analysis of the accelerator-driven system at Kyoto University Research Reactor Institute

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Won Kyeong; Lee, Deok Jung [Nuclear Engineering Division, Ulsan National Institute of Science and Technology, Ulsan (Korea, Republic of); Lee, Hyun Chul [VHTR Technology Development Division, Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of); Pyeon, Cheol Ho [Nuclear Engineering Science Division, Kyoto University Research Reactor Institute, Osaka (Japan); Shin, Ho Cheol [Core and Fuel Analysis Group, Korea Hydro and Nuclear Power Central Research Institute, Daejeon (Korea, Republic of)

    2016-04-15

    An accelerator-driven system consists of a subcritical reactor and a controllable external neutron source. The reactor in an accelerator-driven system can sustain fission reactions in a subcritical state using an external neutron source, which is an intrinsic safety feature of the system. The system can provide efficient transmutations of nuclear wastes such as minor actinides and long-lived fission products and generate electricity. Recently at Kyoto University Research Reactor Institute (KURRI; Kyoto, Japan), a series of reactor physics experiments was conducted with the Kyoto University Critical Assembly and a Cockcroft-Walton type accelerator, which generates the external neutron source by deuterium-tritium reactions. In this paper, neutronic analyses of a series of experiments have been re-estimated by using the latest Monte Carlo code and nuclear data libraries. This feasibility study is presented through the comparison of Monte Carlo simulation results with measurements.

  15. Simulation analysis for effects of bone loss on acceleration tolerance of human lumbar vertebra

    Science.gov (United States)

    Ma, Honglei; Zhang, Feng; Zhu, Yu; Xiao, Yanhua; Wazir, Abrar

    2014-02-01

    The purpose of the present study was to analyze and predict the changes in acceleration tolerance of human vertebra as a result of bone loss caused by long-term space flight. A human L3-L4 vertebra FEM model was constructed, in which the cancellous bone was separated, and surrounding ligaments were also taken into account. The simulation results demonstrated that bone loss has more of an effect on the acceleration tolerance in x-direction. The results serve to aid in the creation of new acceleration tolerance standards, ensuring astronauts return home safely after long-term space flight. This study shows that more attention should be focused on the bone degradation of crew members and to create new protective designs for space capsules in the future.

  16. Effect of fatigue on the intra-cycle acceleration in front crawl swimming: A time-frequency analysis

    CERN Document Server

    Tella, V; Gallach, J E; Benavent, J; Gonzalez, L M; Arellano, R

    2008-01-01

    The present study analyzes the changes in acceleration produced by swimmers before and after fatiguing effort. The subjects (n=15) performed a 25-meter crawl series at maximum speed without fatigue, and a second series with fatigue. The data were registered with a synchronized system that consisted in a position transducer (1 kHz) and a video photogrametry (50Hz). The acceleration (ms-2) was obtained by the derivative analysis of the variation of the position with time. The amplitude in the time domain was calculated with the root mean square (RMS); while the peak power (PP), the peak power frequency (PPF) and the spectrum area (SA) was calculated in the frequency domain with Fourier analysis. On one hand, the results of the temporal domain show that the RMS change percentage between series was 67.5% (p<0.001). On the other hand, PP, PPF, and SA show significant changes (p<0.001). PP and SA were reduced by 63.1% and 59.5%, respectively. Our results show that the acceleration analysis of the swimmer with...

  17. Off-normal and failure condition analysis of the MITICA negative-ion accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Chitarin, Giuseppe, E-mail: chitarin@igi.cnr.it; Aprile, Daniele [Consorzio RFX, (CNR, ENEA, INFN, Università di Padova, Acciaierie Venete SpA), Corso Stati Uniti 4, 35127 Padova (Italy); Department of Management and Engineering, University of Padova, Strad. S. Nicola 3, 36100 Vicenza (Italy); Agostinetti, Piero; Marconato, Nicolò; Marcuzzi, Diego; Serianni, Gianluigi; Veltri, Pierluigi; Zaccaria, Pierluigi [Consorzio RFX, (CNR, ENEA, INFN, Università di Padova, Acciaierie Venete SpA), Corso Stati Uniti 4, 35127 Padova (Italy)

    2016-02-15

    The negative-ion accelerator for the MITICA neutral beam injector has been designed and optimized in order to reduce the thermo-mechanical stresses in all components below limits compatible with the required fatigue life. However, deviation from the expected beam performances can be caused by “off-normal” operating conditions of the accelerator. The purpose of the present work is to identify and analyse all the “off-normal” operating conditions, which could possibly become critical in terms of thermo-mechanical stresses or of degradation of the optical performances of the beam.

  18. Predictors of Local Recurrence Following Accelerated Partial Breast Irradiation: A Pooled Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Shah, Chirag; Wilkinson, John Ben [Department of Radiation Oncology, Beaumont Cancer Institute, Oakland University William Beaumont School of Medicine, Royal Oak, Michigan (United States); Lyden, Maureen [Biostat Inc., Tampa, Florida (United States); Beitsch, Peter [Dallas Breast Center, Dallas, Texas (United States); Vicini, Frank A., E-mail: fvicini@pol.net [Department of Radiation Oncology, Beaumont Cancer Institute, Oakland University William Beaumont School of Medicine, Royal Oak, Michigan (United States)

    2012-04-01

    Purpose: To analyze a pooled set of nearly 2,000 patients treated on the American Society of Breast Surgeons (ASBS) Mammosite Registry Trial and at William Beaumont Hospital (WBH) to identify factors associated with local recurrence following accelerated partial breast irradiation (APBI). Methods and Materials: A total of 1,961 women underwent partial breast irradiation between April 1993 and November 2010 as part of the ASBS Registry Trial or at WBH. Rates of ipsilateral breast tumor recurrence (IBTR), regional recurrence (RR), distant metastases (DM), disease-free survival (DFS), cause-specific survival (CSS), and overall survival (OS) were analyzed for each group and for the pooled cohort. Clinical, pathologic, and treatment-related variables were analyzed including age, tumor stage/size, estrogen receptor status, surgical margins, and lymph node status to determine their association with IBTR. Results: The two groups weres similar, but WBH patients were more frequently node positive, had positive margins, and were less likely to be within the American Society for Radiation Oncology-unsuitable group. At 5 years, the rates of IBTR, RR, DM, DFS, CSS, and OS for the pooled group of patients were 2.9%, 0.5%, 2.4%, 89.1%, 98.5%, and 91.8%, respectively. The 5-year rate of true recurrence/marginal miss was 0.8%. Univariate analysis of IBTR found that negative estrogen receptor status (odds ratio [OR], 2.83, 95% confidence interval 1.55-5.13, p = 0.0007) was the only factor significantly associated with IBTR, while a trend was seen for age less than 50 (OR 1.80, 95% confidence interval 0.90-3.58, p = 0.10). Conclusions: Excellent 5-year outcomes were seen following APBI in over 1,900 patients. Estrogen receptor negativity was the only factor associated with IBTR, while a trend for age less than 50 was noted. Significant differences in factors associated with IBTR were noted between cohorts, suggesting that factors driving IBTR may be predicated based on the risk

  19. Predicting punching acceleration from selected strength and power variables in elite karate athletes: a multiple regression analysis.

    Science.gov (United States)

    Loturco, Irineu; Artioli, Guilherme Giannini; Kobal, Ronaldo; Gil, Saulo; Franchini, Emerson

    2014-07-01

    This study investigated the relationship between punching acceleration and selected strength and power variables in 19 professional karate athletes from the Brazilian National Team (9 men and 10 women; age, 23 ± 3 years; height, 1.71 ± 0.09 m; and body mass [BM], 67.34 ± 13.44 kg). Punching acceleration was assessed under 4 different conditions in a randomized order: (a) fixed distance aiming to attain maximum speed (FS), (b) fixed distance aiming to attain maximum impact (FI), (c) self-selected distance aiming to attain maximum speed, and (d) self-selected distance aiming to attain maximum impact. The selected strength and power variables were as follows: maximal dynamic strength in bench press and squat-machine, squat and countermovement jump height, mean propulsive power in bench throw and jump squat, and mean propulsive velocity in jump squat with 40% of BM. Upper- and lower-body power and maximal dynamic strength variables were positively correlated to punch acceleration in all conditions. Multiple regression analysis also revealed predictive variables: relative mean propulsive power in squat jump (W·kg-1), and maximal dynamic strength 1 repetition maximum in both bench press and squat-machine exercises. An impact-oriented instruction and a self-selected distance to start the movement seem to be crucial to reach the highest acceleration during punching execution. This investigation, while demonstrating strong correlations between punching acceleration and strength-power variables, also provides important information for coaches, especially for designing better training strategies to improve punching speed.

  20. Analysis of radionuclide inventory in accelerator wastes; Analytische Bestimmung des Radionuklidinventars in Beschleunigerabfaellen

    Energy Technology Data Exchange (ETDEWEB)

    Schumann, D.; Weinreich, R.; Atchison, F.; Beer, H.F. [Paul Scherrer Inst., Villigen (Switzerland)

    2005-07-01

    For the determination of the radionuclide inventory of a PSI beam dump {gamma}-spectroscopic as well as -after chemical separation - AMS (Accelerator mass spectrometry) measurements were performed. The results serve as a validation of a calculation code which predict the radionuclide content of the waste for disposal. The chemical separation techniques necessary for isolation of several element fractions are described. (orig.)

  1. Pedestrian movement analysis in transfer station corridor: Velocity-based and acceleration-based

    Science.gov (United States)

    Ji, Xiangfeng; Zhang, Jian; Hu, Yongkai; Ran, Bin

    2016-05-01

    In this paper, pedestrians are classified into aggressive and conservative ones by their temper. Aggressive pedestrians' walking through crowd in transfer station corridor is analyzed. Treating pedestrians as particles, this paper uses the modified social force model (MSFM) as the building block, where forces involve self-driving force, repulsive force and friction force. The proposed model in this paper is a discrete model combining the MSFM and cellular automata (CA) model, where the updating rules of the CA are redefined with MSFM. Due to the continuity of values generated by the MSFM, we use the fuzzy logic to discretize the continuous values into cells pedestrians can move in one step. With the observation that stimulus around pedestrians influences their acceleration directly, an acceleration-based movement model is presented, compared to the generally reviewed velocity-based movement model. In the acceleration-based model, a discretized version of kinematic equation is presented based on the acceleration discretized with fuzzy logic. In real life, some pedestrians would rather keep their desired speed and this is also mimicked in this paper, which is called inertia. Compared to the simple triangular membership function, a trapezoidal membership function and a piecewise linear membership function are used to capture pedestrians' inertia. With the trapezoidal and the piecewise linear membership function, many overlapping scenarios should be carefully handled and Dubois and Prade's four-index method is used to completely describe the relative relationship of fuzzy quantities. Finally, a simulation is constructed to demonstrate the effect of our model.

  2. Automated combustion accelerator mass spectrometry for the analysis of biomedical samples in the low attomole range

    NARCIS (Netherlands)

    Duijn, E. van; Sandman, H.; Grossouw, D.; Mocking, J.A.J.; Coulier, L.; Vaes, W.H.J.

    2014-01-01

    The increasing role of accelerator mass spectrometry (AMS) in biomedical research necessitates modernization of the traditional sample handling process. AMS was originally developed and used for carbon dating, therefore focusing on a very high precision but with a comparably low sample throughput. H

  3. A Tandem Repeat in Decay Accelerating Factor 1 Is Associated with Severity of Murine Mercury-Induced Autoimmunity

    Directory of Open Access Journals (Sweden)

    David M. Cauvi

    2014-01-01

    Full Text Available Decay accelerating factor (DAF, a complement-regulatory protein, protects cells from bystander complement-mediated lysis and negatively regulates T cells. Reduced expression of DAF occurs in several systemic autoimmune diseases including systemic lupus erythematosus, and DAF deficiency exacerbates disease in several autoimmune models, including murine mercury-induced autoimmunity (mHgIA. Daf1, located within Hmr1, a chromosome 1 locus associated in DBA/2 mice with resistance to mHgIA, could be a candidate. Here we show that reduced Daf1 transcription in lupus-prone mice was not associated with a reduction in the Daf1 transcription factor SP1. Studies of NZB mice congenic for the mHgIA-resistant DBA/2 Hmr1 locus suggested that Daf1 expression was controlled by the host genome and not the Hmr1 locus. A unique pentanucleotide repeat variant in the second intron of Daf1 in DBA/2 mice was identified and shown in F2 intercrosses to be associated with less severe disease; however, analysis of Hmr1 congenics indicated that this most likely reflected the presence of autoimmunity-predisposing genetic variants within the Hmr1 locus or that Daf1 expression is mediated by the tandem repeat in epistasis with other genetic variants present in autoimmune-prone mice. These studies argue that the effect of DAF on autoimmunity is complex and may require multiple genetic elements.

  4. Analysis of Uncertainties in Protection Heater Delay Time Measurements and Simulations in Nb$_{3}$Sn High-Field Accelerator Magnets

    CERN Document Server

    Salmi, Tiina; Marchevsky, Maxim; Bajas, Hugo; Felice, Helene; Stenvall, Antti

    2015-01-01

    The quench protection of superconducting high-field accelerator magnets is presently based on protection heaters, which are activated upon quench detection to accelerate the quench propagation within the winding. Estimations of the heater delay to initiate a normal zone in the coil are essential for the protection design. During the development of Nb3Sn magnets for the LHC luminosity upgrade, protection heater delays have been measured in several experiments, and a new computational tool CoHDA (Code for Heater Delay Analysis) has been developed for heater design. Several computational quench analyses suggest that the efficiency of the present heater technology is on the borderline of protecting the magnets. Quantifying the inevitable uncertainties related to the measured and simulated delays is therefore of pivotal importance. In this paper, we analyze the uncertainties in the heater delay measurements and simulations using data from five impregnated high-field Nb3Sn magnets with different heater geometries. ...

  5. Functional Data Analysis of Spaceflight-Induced Changes in Coordination and Phase in Head Pitch Acceleration During Treadmill Walking

    Science.gov (United States)

    Miller, Christopher; Peters, Brian; Feiveson, Alan; Bloomberg, Jacob

    2011-01-01

    Astronauts returning from spaceflight experience neurovestibular disturbances during head movements and attempt to mitigate them by limiting head motion. Analyses to date of the head movements made during walking have concentrated on amplitude and variability measures extracted from ensemble averages of individual gait cycles. Phase shifts within each gait cycle can be determined by functional data analysis through the computation of time-warping functions. Large, localized variations in the timing of peaks in head kinematics may indicate changes in coordination. The purpose of this study was to determine timing changes in head pitch acceleration of astronauts during treadmill walking before and after flight. Six astronauts (5M/1F; age = 43.5+/-6.4yr) participated in the study. Subjects walked at 1.8 m/sec (4 mph) on a motorized treadmill while reading optotypes displayed on a computer screen 4 m in front of their eyes. Three-dimensional motion of the subject s head was recorded with an Inertial Measurement Unit (IMU) device. Data were recorded twice before flight and four times after landing. The head pitch acceleration was calculated by taking the time derivative of the pitch velocity data from the IMU. Data for each session with each subject were time-normalized into gait cycles, then registered to align significant features and create a mean curve. The mean curves of each postflight session for each subject were re-registered based on their preflight mean curve to create time-warping functions. The root mean squares (RMS) of these warping functions were calculated to assess the deviation of head pitch acceleration mean curves in each postflight session from the preflight mean curve. After landing, most crewmembers exhibited localized shifts within their head pitch acceleration regimes, with the greatest deviations in RMS occurring on landing day or 1 day after landing. These results show that the alteration of head pitch coordination due to spaceflight may be

  6. Wave packet analysis and break-up length calculations for an accelerating planar liquid jet

    International Nuclear Information System (INIS)

    This paper examines the process of transition to turbulence within an accelerating planar liquid jet. By calculating the propagation and spatial evolution of disturbance wave packets generated at a nozzle where the jet emerges, we are able to estimate break-up lengths and break-up times for different magnitudes of acceleration and different liquid to air density ratios. This study uses a basic jet velocity profile that has shear layers in both air and the liquid either side of the fluid interface. The shear layers are constructed as functions of velocity which behave in line with our CFD simulations of injecting diesel jets. The non-dimensional velocity of the jet along the jet centre-line axis is assumed to take the form V (t) = tanh(at), where the parameter a determines the magnitude of the acceleration. We compare the fully unsteady results obtained by solving the unsteady Rayleigh equation to those of a quasi-steady jet to determine when the unsteady effects are significant and whether the jet can be regarded as quasi-steady in typical operating conditions for diesel engines. For a heavy fluid injecting into a lighter fluid (density ratio ρair/ρjet = q < 1), it is found that unsteady effects are mainly significant at early injection times where the jet velocity profile is changing fastest. When the shear layers in the jet thin with time, the unsteady effects cause the growth rate of the wave packet to be smaller than the corresponding quasi-steady jet, whereas for thickening shear layers the unsteady growth rate is larger than that of the quasi-steady jet. For large accelerations (large a), the unsteady effect remains at later times but its effect on the growth rate of the wave packet decreases as the time after injection increases. As the rate of acceleration is reduced, the range of velocity values for which the jet can be considered as quasi-steady increases until eventually the whole jet can be considered quasi-steady. For a homogeneous jet (q = 1), the

  7. Simulation and analysis of TE wave propagation for measurement of electron cloud densities in particle accelerators

    International Nuclear Information System (INIS)

    The use of transverse electric (TE) waves has proved to be a powerful, noninvasive method for estimating the densities of electron clouds formed in particle accelerators. Results from the plasma simulation program VSim have served as a useful guide for experimental studies related to this method, which have been performed at various accelerator facilities. This paper provides results of the simulation and modeling work done in conjunction with experimental efforts carried out at the Cornell electron storage ring “Test Accelerator” (CESRTA). This paper begins with a discussion of the phase shift induced by electron clouds in the transmission of RF waves, followed by the effect of reflections along the beam pipe, simulation of the resonant standing wave frequency shifts and finally the effects of external magnetic fields, namely dipoles and wigglers. A derivation of the dispersion relationship of wave propagation for arbitrary geometries in field free regions with a cold, uniform cloud density is also provided

  8. A cosmographic analysis of the transition to acceleration using SN-Ia and BAO

    CERN Document Server

    Muthukrishna, Daniel

    2016-01-01

    We explore the distance-redshift relation using a cosmographic methodology, and show how the cosmographic parameters can be used to determine the redshift of transition from deceleration to acceleration. Such a transition at a low redshift occupies only a small region of the available parameter space, and the prior assumption of an early period of deceleration can significantly change the posterior constraints. We use available type Ia Supernovae (SN-Ia) and Baryon Acoustic Oscillation (BAO) data sets to determine the cosmographic deceleration $q_0$, jerk $j_0$, snap $s_0$ and lerk $l_0$ parameters. The parameters are consistent with the $\\Lambda$CDM model for a flat universe within 2-sigma. We derive constraints on the redshift of transition from deceleration to acceleration for the different expansions, and find $z_{\\rm acc} > 0.14$ at 95% confidence in the most conservative case.

  9. Simulation and Analysis of TE Wave Propagation as a Probe for Electron Clouds in Particle Accelerators

    CERN Document Server

    Sonnad, Kiran G; Schwartz, Robert; Veitzer, Seth

    2013-01-01

    The use of transverse electric (TE) waves has proved to be a powerful, noninvasive method for estimating the densities of electron clouds formed in particle accelerators. Results from the plasma simulation program VORPAL have been a useful guide for experimental studies related to this method, which have been performed at various accelerator facilities. This paper provides results of the simulation and modeling work done in conjunction with experimental efforts carried out at CesrTA. The discussion starts from the phase shift induced by electron clouds in the transmission of the wave, followed by the effect of reflections along the beam-pipe, the simulation of the resonant wave method and the effects of external magnetic fields, namely dipoles and wigglers. A derivation of the dispersion relationship of wave propagation for arbitrary geometries in field free regions with a uniform cloud density is also provided.

  10. Application of High-performance Visual Analysis Methods to Laser Wakefield Particle Acceleration Data

    International Nuclear Information System (INIS)

    Our work combines and extends techniques from high-performance scientific data management and visualization to enable scientific researchers to gain insight from extremely large, complex, time-varying laser wakefield particle accelerator simulation data. We extend histogram-based parallel coordinates for use in visual information display as well as an interface for guiding and performing data mining operations, which are based upon multi-dimensional and temporal thresholding and data subsetting operations. To achieve very high performance on parallel computing platforms, we leverage FastBit, a state-of-the-art index/query technology, to accelerate data mining and multi-dimensional histogram computation. We show how these techniques are used in practice by scientific researchers to identify, visualize and analyze a particle beam in a large, time-varying dataset

  11. Performance analysis of superconducting rf cavities for the CERN rare isotope accelerator

    Science.gov (United States)

    Calatroni, S.; Miyazaki, A.; Rosaz, G.; Sublet, A.; Venturini Delsolaro, W.; Vaglio, R.; Palmieri, V.

    2016-09-01

    The first cryomodule of the new HIE-ISOLDE rare isotope accelerator has recently been commissioned with beam at CERN, with the second cryomodule ready for installation. Each cryomodule contains five superconducting low-beta quarter wave cavities, produced with the technology of sputtering a thin niobium film onto the copper substrate (Nb /Cu ). This technology has several benefits compared to the bulk niobium solution, but also drawbacks among which the most relevant is the increase of surface resistance with accelerating field. Recent work has established the possible connection of this phenomenon to local defects in the Nb /Cu interface, which may lead to increased thermal impedance and thus local thermal runaway. We have analyzed the performance of the HIE-ISOLDE cavities series production, as well as of a few prototypes', in terms of this model, and found a strong correlation between the rf properties and one of the model characteristic quantities, namely the total surface having increased interface thermal impedance.

  12. Application of High-performance Visual Analysis Methods to Laser Wakefield Particle Acceleration Data

    Energy Technology Data Exchange (ETDEWEB)

    Rubel, Oliver; Prabhat, Mr.; Wu, Kesheng; Childs, Hank; Meredith, Jeremy; Geddes, Cameron G.R.; Cormier-Michel, Estelle; Ahern, Sean; Weber, Gunther H.; Messmer, Peter; Hagen, Hans; Hamann, Bernd; Bethel, E. Wes

    2008-08-28

    Our work combines and extends techniques from high-performance scientific data management and visualization to enable scientific researchers to gain insight from extremely large, complex, time-varying laser wakefield particle accelerator simulation data. We extend histogram-based parallel coordinates for use in visual information display as well as an interface for guiding and performing data mining operations, which are based upon multi-dimensional and temporal thresholding and data subsetting operations. To achieve very high performance on parallel computing platforms, we leverage FastBit, a state-of-the-art index/query technology, to accelerate data mining and multi-dimensional histogram computation. We show how these techniques are used in practice by scientific researchers to identify, visualize and analyze a particle beam in a large, time-varying dataset.

  13. Analysis of requirements for accelerating the development of geothermal energy resources in California

    Science.gov (United States)

    Fredrickson, C. D.

    1978-01-01

    Various resource data are presented showing that geothermal energy has the potential of satisfying a singificant part of California's increasing energy needs. General factors slowing the development of geothermal energy in California are discussed and required actions to accelerate its progress are presented. Finally, scenarios for developing the most promising prospects in the state directed at timely on-line power are given. Specific actions required to realize each of these individual scenarios are identified.

  14. Continuous Wavelet Transform Analysis of Acceleration Signals Measured from a Wave Buoy

    OpenAIRE

    Laurence Zsu-Hsin Chuang; Jong-Hao Wang; Li-Chung Wu

    2013-01-01

    Accelerometers, which can be installed inside a floating platform on the sea, are among the most commonly used sensors for operational ocean wave measurements. To examine the non-stationary features of ocean waves, this study was conducted to derive a wavelet spectrum of ocean waves and to synthesize sea surface elevations from vertical acceleration signals of a wave buoy through the continuous wavelet transform theory. The short-time wave features can be revealed by simultaneously examining ...

  15. Probabilistic safety analysis of radiation treatments with linear accelerator (Spanish Ed.)

    International Nuclear Information System (INIS)

    This publication addresses the issue of accidental exposures of radiotherapy patients and how to avoid them. More proactive approaches are required to anticipate and thus avoid situations that could lead to accidental exposures. In this context, the International Atomic Energy Agency (IAEA) and the Ibero American Forum of Radiation and Nuclear and Safety Regulatory Agencies (the FORO) have applied proactive methods, such as probabilistic safety assessment to radiotherapy treatments with accelerators. The methodology and results of this exercise are described in this publication.

  16. Accelerated protein evolution analysis reveals genes and pathways associated with the evolution of mammalian longevity

    OpenAIRE

    Li, Yang; de Magalhães, João Pedro

    2011-01-01

    The genetic basis of the large species differences in longevity and aging remains a mystery. Thanks to recent large-scale genome sequencing efforts, the genomes of multiple species have been sequenced and can be used for cross-species comparisons to study species divergence in longevity. By analyzing proteins under accelerated evolution in several mammalian lineages where maximum lifespan increased, we identified genes and processes that are candidate targets of selection when longevity evolv...

  17. Implications of accelerated agricultural growth on household incomes and poverty in Ethiopia: A general equilibrium analysis

    OpenAIRE

    Dorosh, Paul A.; Thurlow, James

    2009-01-01

    Ethiopia’s national development strategy, A Plan for Accelerated and Sustained Development to End Poverty for 2005/06 to 2009/10 (PASDEP) places a major emphasis on achieving high rates of agricultural and overall economic growth. Consistent with the PASDEP, Ethiopia is also in the process of implementing the Comprehensive Africa Agriculture Development Programme (CAADP) together with other African governments. As part of CAADP, the country has committed itself to meeting targets of devotin...

  18. Continuous wavelet transform analysis of acceleration signals measured from a wave buoy.

    Science.gov (United States)

    Chuang, Laurence Zsu-Hsin; Wu, Li-Chung; Wang, Jong-Hao

    2013-01-01

    Accelerometers, which can be installed inside a floating platform on the sea, are among the most commonly used sensors for operational ocean wave measurements. To examine the non-stationary features of ocean waves, this study was conducted to derive a wavelet spectrum of ocean waves and to synthesize sea surface elevations from vertical acceleration signals of a wave buoy through the continuous wavelet transform theory. The short-time wave features can be revealed by simultaneously examining the wavelet spectrum and the synthetic sea surface elevations. The in situ wave signals were applied to verify the practicality of the wavelet-based algorithm. We confirm that the spectral leakage and the noise at very-low-frequency bins influenced the accuracies of the estimated wavelet spectrum and the synthetic sea surface elevations. The appropriate thresholds of these two factors were explored. To study the short-time wave features from the wave records, the acceleration signals recorded from an accelerometer inside a discus wave buoy are analysed. The results from the wavelet spectrum show the evidence of short-time nonlinear wave events. Our study also reveals that more surface profiles with higher vertical asymmetry can be found from short-time nonlinear wave with stronger harmonic spectral peak. Finally, we conclude that the algorithms of continuous wavelet transform are practical for revealing the short-time wave features of the buoy acceleration signals. PMID:23966188

  19. Continuous Wavelet Transform Analysis of Acceleration Signals Measured from a Wave Buoy

    Directory of Open Access Journals (Sweden)

    Laurence Zsu-Hsin Chuang

    2013-08-01

    Full Text Available Accelerometers, which can be installed inside a floating platform on the sea, are among the most commonly used sensors for operational ocean wave measurements. To examine the non-stationary features of ocean waves, this study was conducted to derive a wavelet spectrum of ocean waves and to synthesize sea surface elevations from vertical acceleration signals of a wave buoy through the continuous wavelet transform theory. The short-time wave features can be revealed by simultaneously examining the wavelet spectrum and the synthetic sea surface elevations. The in situ wave signals were applied to verify the practicality of the wavelet-based algorithm. We confirm that the spectral leakage and the noise at very-low-frequency bins influenced the accuracies of the estimated wavelet spectrum and the synthetic sea surface elevations. The appropriate thresholds of these two factors were explored. To study the short-time wave features from the wave records, the acceleration signals recorded from an accelerometer inside a discus wave buoy are analysed. The results from the wavelet spectrum show the evidence of short-time nonlinear wave events. Our study also reveals that more surface profiles with higher vertical asymmetry can be found from short-time nonlinear wave with stronger harmonic spectral peak. Finally, we conclude that the algorithms of continuous wavelet transform are practical for revealing the short-time wave features of the buoy acceleration signals.

  20. From tracking code to analysis generalised Courant-Snyder theory for any accelerator model

    CERN Document Server

    Forest, Etienne

    2016-01-01

    This book illustrates a theory well suited to tracking codes, which the author has developed over the years. Tracking codes now play a central role in the design and operation of particle accelerators. The theory is fully explained step by step with equations and actual codes that the reader can compile and run with freely available compilers. In this book, the author pursues a detailed approach based on finite “s”-maps, since this is more natural as long as tracking codes remain at the center of accelerator design. The hierarchical nature of software imposes a hierarchy that puts map-based perturbation theory above any other methods. This is not a personal choice: it follows logically from tracking codes overloaded with a truncated power series algebra package. After defining abstractly and briefly what a tracking code is, the author illustrates most of the accelerator perturbation theory using an actual code: PTC. This book may seem like a manual for PTC; however, the reader is encouraged to explore...

  1. Development and analysis of a metal-fueled accelerator-driven burner

    Energy Technology Data Exchange (ETDEWEB)

    Lypsch, F. [Institute for Safety Research and Reactor Technology, Juelich GmbH (Germany); Hill, R.N. [Argonne National Lab., IL (United States)

    1994-08-01

    The purpose of this paper is to compare the safety characteristics of an accelerator driven metal fueled fast system to a critical core on a consistent basis to determine how these characteristics are affected solely by subcritically of the system. To accomplish this an accelerator proton beam/tungsten neutron source model is surrounded by a subcritical blanket using metallic fuel and sodium as coolant. The consequences of typical accident transients, namely unprotected transient overpower (TOP), loss of heat sink (LOHS), and loss of flow (LOP) were calculated for the hybrid system and compared to corresponding results for a metal-fueled fast reactor. Results indicate that the subcritical system exhibits superior performance for TOP (reactivity-induced) transits; however, only in the critical system are reactivity feedbacks able to cause passive shutdown in the LOHS ad LOP events. Therefore, for a full spectrum of accident initiators considered, the overall safety behavior of accelerator-driven metal-fueled systems can neither be concluded to be worse nor to be better than advanced reactor designs which rely on passive safety features.

  2. External-beam PIXE analysis of aerosol samples at GIC4117 Tandem Accelerator Laboratory of Beijing Normal University

    International Nuclear Information System (INIS)

    Full text: The external-beam facility at GIC4117 tandem accelerator laboratory of Beijing Normal University for PIXE analysis has been introduced, the influence of different aerosol sampling membrane filters on the beam current measurement with a homemade Faraday cup was studied by analysis of a Mn(44.0μg/cm2) MicroMatter standards sample with different filters behind it. Average and the lowest of the external-beam PIXE analysis compared with in-vacuum PIXE over about 360 aerosol samples. External-beam PIXE analysis results of PM2.5 aerosol fractions collected on Teflon filters on daily basis over 2010 at south campus of Beijing Normal University also were shown. (author)

  3. Evidence of statistical epistasis between DISC1, CIT and NDEL1 impacting risk for schizophrenia: biological validation with functional neuroimaging.

    Science.gov (United States)

    Nicodemus, Kristin K; Callicott, Joseph H; Higier, Rachel G; Luna, Augustin; Nixon, Devon C; Lipska, Barbara K; Vakkalanka, Radhakrishna; Giegling, Ina; Rujescu, Dan; St Clair, David; Muglia, Pierandrea; Shugart, Yin Yao; Weinberger, Daniel R

    2010-04-01

    The etiology of schizophrenia likely involves genetic interactions. DISC1, a promising candidate susceptibility gene, encodes a protein which interacts with many other proteins, including CIT, NDEL1, NDE1, FEZ1 and PAFAH1B1, some of which also have been associated with psychosis. We tested for epistasis between these genes in a schizophrenia case-control study using machine learning algorithms (MLAs: random forest, generalized boosted regression andMonteCarlo logic regression). Convergence of MLAs revealed a subset of seven SNPs that were subjected to 2-SNP interaction modeling using likelihood ratio tests for nested unconditional logistic regression models. Of the 7C2 = 21 interactions, four were significant at the α = 0.05 level: DISC1 rs1411771-CIT rs10744743 OR = 3.07 (1.37, 6.98) p = 0.007; CIT rs3847960-CIT rs203332 OR = 2.90 (1.45, 5.79) p = 0.003; CIT rs3847960-CIT rs440299 OR = 2.16 (1.04, 4.46) p = 0.038; one survived Bonferroni correction (NDEL1 rs4791707-CIT rs10744743 OR = 4.44 (2.22, 8.88) p = 0.00013). Three of four interactions were validated via functional magnetic resonance imaging (fMRI) in an independent sample of healthy controls; risk associated alleles at both SNPs predicted prefrontal cortical inefficiency during the N-back task, a schizophrenia-linked intermediate biological phenotype: rs3847960-rs440299; rs1411771-rs10744743, rs4791707-rs10744743 (SPM5 p < 0.05, corrected), although we were unable to statistically replicate the interactions in other clinical samples. Interestingly, the CIT SNPs are proximal to exons that encode theDISC1 interaction domain. In addition, the 3' UTR DISC1 rs1411771 is predicted to be an exonic splicing enhancer and the NDEL1 SNP is ~3,000 bp from the exon encoding the region of NDEL1 that interacts with the DISC1 protein, giving a plausible biological basis for epistasis signals validated by fMRI. PMID:20084519

  4. Cooling the APS storage ring radio-frequency accelerating cavities: Thermal/stress/fatigue analysis and cavity cooling configuration

    International Nuclear Information System (INIS)

    The 7-GeV Advanced Photon Source positron storage ring requires sixteen separate 352-MHz radio-frequency (rf) accelerating cavities. Cavities are installed as groups of four, in straight sections used elsewhere for insertion devices. They occupy the first such straight section after injection, along with the last three just before injection. Cooling is provided by a subsystem of the sitewide deionized water system. Pumping equipment is located in a building directly adjacent to the accelerator enclosure. A prototype cavity was fabricated and tested where cooling was via twelve 19-mm-diameter [3/4 in] brazed-on tubes in a series-parallel flow configuration. Unfortunately, the thermal contact to some tubes was poor due to inadequate braze filler. Here, heat transfer studies, including finite-element analysis and test results, of the Advanced Photon Source (APS) storage ring 352-MHz rf accelerating cavities are described. Stress and fatigue life of the copper are discussed. Configuration of water cooling is presented

  5. Future accelerators (?)

    Energy Technology Data Exchange (ETDEWEB)

    John Womersley

    2003-08-21

    I describe the future accelerator facilities that are currently foreseen for electroweak scale physics, neutrino physics, and nuclear structure. I will explore the physics justification for these machines, and suggest how the case for future accelerators can be made.

  6. Surface Analysis of OFE-Copper X-Band Accelerating Structures and Possible Correlation to RF Breakdown Events

    CERN Document Server

    Harvey, S E; Kirby, R E; Marcelja, F; Adamson, K; Garwin, E L

    2003-01-01

    X-band accelerator structures meeting the Next Linear Collider (NLC) design requirements have been found to suffer vacuum surface damage caused by radio frequency (RF) breakdown, when processed to high electric-field gradients. Improved understanding of these breakdown events is desirable for the development of structure designs, fabrication procedures, and processing techniques that minimize structure damage. RF reflected wave analysis and acoustic sensor pickup have provided breakdowns localization in RF structures. Particle contaminations found following clean autopsy of four RF-processed travelling wave structures, have been catalogued and analyzed. Their influence on RF breakdown, as well as that of several other material-based properties, will be discussed.

  7. SU-C-BRD-03: Analysis of Accelerator Generated Text Logs for Preemptive Maintenance

    International Nuclear Information System (INIS)

    Purpose: To develop a model to analyze medical accelerator generated parameter and performance data that will provide an early warning of performance degradation and impending component failure. Methods: A robust 6 MV VMAT quality assurance treatment delivery was used to test the constancy of accelerator performance. The generated text log files were decoded and analyzed using statistical process control (SPC) methodology. The text file data is a single snapshot of energy specific and overall systems parameters. A total of 36 system parameters were monitored which include RF generation, electron gun control, energy control, beam uniformity control, DC voltage generation, and cooling systems. The parameters were analyzed using Individual and Moving Range (I/MR) charts. The chart limits were calculated using a hybrid technique that included the use of the standard 3σ limits and the parameter/system specification. Synthetic errors/changes were introduced to determine the initial effectiveness of I/MR charts in detecting relevant changes in operating parameters. The magnitude of the synthetic errors/changes was based on: the value of 1 standard deviation from the mean operating parameter of 483 TB systems, a small fraction (≤ 5%) of the operating range, or a fraction of the minor fault deviation. Results: There were 34 parameters in which synthetic errors were introduced. There were 2 parameters (radial position steering coil, and positive 24V DC) in which the errors did not exceed the limit of the I/MR chart. The I chart limit was exceeded for all of the remaining parameters (94.2%). The MR chart limit was exceeded in 29 of the 32 parameters (85.3%) in which the I chart limit was exceeded. Conclusion: Statistical process control I/MR evaluation of text log file parameters may be effective in providing an early warning of performance degradation or component failure for digital medical accelerator systems. Research is Supported by Varian Medical Systems, Inc

  8. Improving the design and analysis of superconducting magnets for particle accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Gupta, R C [Univ. of Rajasthan, Jaipur (India). Dept. of Physics

    1996-11-01

    High energy particle accelerators are now the primary means of discovering the basic building blocks of matter and understanding the forces between them. In order to minimize the cost of building these machines, superconducting magnets are used in essentially all present day high energy proton and heavy ion colliders. The cost of superconducting magnets is typically in the range of 20--30% of the total cost of building such machines. The circulating particle beam goes through these magnets a large number of times (over hundreds of millions). The luminosity performance and life time of the beam in these machines depends significantly on the field quality in these magnets. Therefore, even a small error in the magnetic field shape may create a large cumulative effect in the beam trajectory to throw the particles of the magnet aperture. The superconducting accelerator magnets must, therefore, be designed and constructed so that these errors are small. In this thesis the research and development work will be described 3which has resulted in significant improvements in the field quality of the superconducting magnets for the Relativistic Heavy Ion Collider (RHIC). The design and the field quality improvements in the prototype of the main collider dipole magnet for the Superconducting Super Collider (SSC) will also be presented. RHIC will accelerate and collide two counter rotating beams of heavy ions up to 100 GeV/u and protons up to 250 GeV. It is expected that RHIC will create a hot, dense quark-gluon plasma and the conditions which, according to the Big Bang theory, existed in the early universe.

  9. Statistical analysis of operating efficiency and failures of a medical linear accelerator for ten years

    International Nuclear Information System (INIS)

    To improve the management of a medical linear accelerator, the records of operational failures of a Varian CL2100C over a ten year period were retrospectively analyzed. The failures were classified according to the involved functional subunits, with each class rated into one of three levels depending on the operational conditions. The relationships between the failure rate and working ratio and between the failure rate and outside temperature were investigated. In addition, the average life time of the main part and the operating efficiency over the last 4 years were analyzed. Among the recorded failures (total 587 failures), the most frequent failure was observed in the parts related with the collimation system, including the monitor chamber, which accounted for 20% of all failures. With regard to the operational conditions, 2nd level of failures, which temporally interrupted treatments, were the most frequent. Third level of failures, which interrupted treatment for more than several hours, were mostly caused by the accelerating subunit. The number of failures was increased with number of treatments and operating time. The average life-times of the Klystron and Thyratron became shorter as the working ratio increased, and were 42 and 83% of the expected values, respectively. The operating efficiency was maintained at 95% or higher, but this value slightly decreased. There was no significant correlation between the number of failures and the outside temperature. The maintenance of detailed equipment problems and failures records over a long period of time can provide good knowledge of equipment function as well as the capability of predicting future failure. More rigorous equipment maintenance is required for old medical linear accelerators for the advanced avoidance of serious failure and to improve the quality of patient treatment

  10. Measurement and analysis of the electric field radiation in pulsed power system of linear induction accelerator

    International Nuclear Information System (INIS)

    The close of high voltage switch in pulsed power system of linear induction accelerator often radiates strong transient electric field, which may influence ambient sensitive electric equipment, signals and performance of other instruments, etc. By performing gridded measurement around the Marx generator, the general distribution law and basic characters of electric field radiation are summarized. The current signal of the discharge circuit is also measured, which demonstrates that the current and the radiated electric field both have a resonance frequency about 150 kHz, and contain much higher frequency components. (authors)

  11. Analysis of accelerator based neutron spectra for BNCT using proton recoil spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Wielopolski, L.; Ludewig, H.; Powell, J.R.; Raparia, D.; Alessi, J.G.; Lowenstein, D.I.

    1999-03-01

    Boron Neutron Capture Therapy (BNCT) is a promising binary treatment modality for high-grade primary brain tumors (glioblastoma multiforme, GM) and other cancers. BNCT employs a boron-10 containing compound that preferentially accumulates in the cancer cells in the brain. Upon neutron capture by {sup 10}B energetic alpha particles and triton released at the absorption site kill the cancer cell. In order to gain penetration depth in the brain Fairchild proposed, for this purpose, the use of energetic epithermal neutrons at about 10 keV. Phase 1/2 clinical trials of BNCT for GM are underway at the Brookhaven Medical Research Reactor (BMRR) and at the MIT Reactor, using these nuclear reactors as the source for epithermal neutrons. In light of the limitations of new reactor installations, e.g. cost, safety and licensing, and limited capability for modulating the reactor based neutron beam energy spectra, alternative neutron sources are being contemplated for wider implementation of this modality in a hospital environment. For example, accelerator based neutron sources offer the possibility of tailoring the neutron beams, in terms of improved depth-dose distributions, to the individual and offer, with relative ease, the capability of modifying the neutron beam energy and port size. In previous work new concepts for compact accelerator/target configuration were published. In this work, using the Van de Graaff accelerator the authors have explored different materials for filtering and reflecting neutron beams produced by irradiating a thick Li target with 1.8 to 2.5 MeV proton beams. However, since the yield and the maximum neutron energy emerging from the Li-7(p,n)Be-7 reaction increase with increase in the proton beam energy, there is a need for optimization of the proton energy versus filter and shielding requirements to obtain the desired epithermal neutron beam. The MCNP-4A computer code was used for the initial design studies that were verified with benchmark

  12. ANALYSIS OF ACCELERATOR BASED NEUTRON SPECTRA FOR BNCT USING PROTON RECOIL SPECTROSCOPY

    Energy Technology Data Exchange (ETDEWEB)

    WIELOPOLSKI,L.; LUDEWIG,H.; POWELL,J.R.; RAPARIA,D.; ALESSI,J.G.; LOWENSTEIN,D.I.

    1998-11-06

    Boron Neutron Capture Therapy (BNCT) is a promising binary treatment modality for high-grade primary brain tumors (glioblastoma multiforme, GM) and other cancers. BNCT employs a boron-10 containing compound that preferentially accumulates in the cancer cells in the brain. Upon neutron capture by {sup 10}B energetic alpha particles and triton released at the absorption site kill the cancer cell. In order to gain penetration depth in the brain Fairchild proposed, for this purpose, the use of energetic epithermal neutrons at about 10 keV. Phase I/II clinical trials of BNCT for GM are underway at the Brookhaven Medical Research Reactor (BMRR) and at the MIT Reactor, using these nuclear reactors as the source for epithermal neutrons. In light of the limitations of new reactor installations, e.g. cost, safety and licensing, and limited capability for modulating the reactor based neutron beam energy spectra alternative neutron sources are being contemplated for wider implementation of this modality in a hospital environment. For example, accelerator based neutron sources offer the possibility of tailoring the neutron beams, in terms of improved depth-dose distributions, to the individual and offer, with relative ease, the capability of modifying the neutron beam energy and port size. In previous work new concepts for compact accelerator/target configuration were published. In this work, using the Van de Graaff accelerator the authors have explored different materials for filtering and reflecting neutron beams produced by irradiating a thick Li target with 1.8 to 2.5 MeV proton beams. However, since the yield and the maximum neutron energy emerging from the Li-7(p,n)Be-7 reaction increase with increase in the proton beam energy, there is a need for optimization of the proton energy versus filter and shielding requirements to obtain the desired epithermal neutron beam. The MCNP-4A computer code was used for the initial design studies that were verified with benchmark

  13. Monte Carlo analysis of accelerator-driven systems studies on spallation neutron yield and energy gain

    CERN Document Server

    Hashemi-Nezhad, S R; Westmeier, W; Bamblevski, V P; Krivopustov, M I; Kulakov, B A; Sosnin, A N; Wan, J S; Odoj, R

    2001-01-01

    The neutron yield in the interaction of protons with lead and uranium targets has been studied using the LAHET code system. The dependence of the neutron multiplicity on target dimensions and proton energy has been calculated and the dependence of the energy amplification on the proton energy has been investigated in an accelerator-driven system of a given effective multiplication coefficient. Some of the results are compared with experimental findings and with similar calculations by the DCM/CEM code of Dubna and the FLUKA code system used in CERN. (14 refs).

  14. Calibration of a new experimental chamber for PIXE analysis at the Accelerator Facilities Division of Atomic Energy Centre Dhaka (AECD)

    International Nuclear Information System (INIS)

    A new experimental chamber has been installed at the 3 MV Van de Graaff Accelerator Facilities Division in the Atomic Energy Centre, Dhaka, to perform different Ion Beam Analysis (IBA) techniques. The calibration of this new setup for Particle Induced X-ray Emission (PIXE) technique has been done using a set of thin MicroMatter standards and GUPIX (PIXE spectrum analysis software), which is explicated in this paper. The effective thicknesses of the beryllium window of the X-ray detector and of the different absorbers used were determined. For standardization, the so called instrumental constant H (product of detector solid angle and the correction factor for the setup) as function of X-ray energy were determined and stored inside the GUPIX library for further PIXE analysis

  15. Calibration of a new experimental chamber for PIXE analysis at the Accelerator Facilities Division of Atomic Energy Centre Dhaka (AECD)

    Energy Technology Data Exchange (ETDEWEB)

    Hassan, Md. Taufique, E-mail: thassan@tulane.edu [Department of Physics, University of Dhaka (Bangladesh); Shariff, Md. Asad [Tandem Accelerator Facilities division, INST, AERE, Savar (Bangladesh); Hossein, Amzad; Abedin, Md. Joynal [Accelerator Facilities division, AECD (Bangladesh); Fazlul Hoque, A.K.M. [Daffodil International University, Dhaka (Bangladesh); Chowdhuri, M.S. [Department of Physics, University of Dhaka (Bangladesh)

    2015-05-01

    A new experimental chamber has been installed at the 3 MV Van de Graaff Accelerator Facilities Division in the Atomic Energy Centre, Dhaka, to perform different Ion Beam Analysis (IBA) techniques. The calibration of this new setup for Particle Induced X-ray Emission (PIXE) technique has been done using a set of thin MicroMatter standards and GUPIX (PIXE spectrum analysis software), which is explicated in this paper. The effective thicknesses of the beryllium window of the X-ray detector and of the different absorbers used were determined. For standardization, the so called instrumental constant H (product of detector solid angle and the correction factor for the setup) as function of X-ray energy were determined and stored inside the GUPIX library for further PIXE analysis.

  16. Switched Matrix Accelerator

    International Nuclear Information System (INIS)

    We describe a new concept for a microwave circuit functioning as a charged-particle accelerator at mm-wavelengths, permitting an accelerating gradient higher than conventional passive circuits can withstand consistent with cyclic fatigue. The device provides acceleration for multiple bunches in parallel channels, and permits a short exposure time for the conducting surface of the accelerating cavities. Our analysis includes scalings based on a smooth transmission line model and a complementary treatment with a coupled-cavity simulation. We provide also an electromagnetic design for the accelerating structure, arriving at rough dimensions for a seven-cell accelerator matched to standard waveguide and suitable for bench tests at low power in air at 91.392. GHz. A critical element in the concept is a fast mm-wave switch suitable for operation at high-power, and we present the considerations for implementation in an H-plane tee. We discuss the use of diamond as the photoconductor switch medium

  17. Analysis of Anderson Acceleration on a Simplified Neutronics/Thermal Hydraulics System

    Energy Technology Data Exchange (ETDEWEB)

    Toth, Alex [North Carolina State University (NCSU), Raleigh; Kelley, C. T. [North Carolina State University (NCSU), Raleigh; Slattery, Stuart R [ORNL; Hamilton, Steven P [ORNL; Clarno, Kevin T [ORNL; Pawlowski, R. P. P. [Sandia National Laboratories (SNL)

    2015-01-01

    ABSTRACT A standard method for solving coupled multiphysics problems in light water reactors is Picard iteration, which sequentially alternates between solving single physics applications. This solution approach is appealing due to simplicity of implementation and the ability to leverage existing software packages to accurately solve single physics applications. However, there are several drawbacks in the convergence behavior of this method; namely slow convergence and the necessity of heuristically chosen damping factors to achieve convergence in many cases. Anderson acceleration is a method that has been seen to be more robust and fast converging than Picard iteration for many problems, without significantly higher cost per iteration or complexity of implementation, though its effectiveness in the context of multiphysics coupling is not well explored. In this work, we develop a one-dimensional model simulating the coupling between the neutron distribution and fuel and coolant properties in a single fuel pin. We show that this model generally captures the convergence issues noted in Picard iterations which couple high-fidelity physics codes. We then use this model to gauge potential improvements with regard to rate of convergence and robustness from utilizing Anderson acceleration as an alternative to Picard iteration.

  18. Comparison of spectral analysis of vibration using commercial knock sensor and 3-axis acceleration sensor

    Science.gov (United States)

    Zieliński, Ł.; Walczak, D.; Szczurowski, K.; Radkowski, S.

    2016-09-01

    With the development of internal combustion engines, engineers attempt to reduce the noise and vibration generated. Due to the high cost of fuel, are increasingly looking for new sources of power in order to reduce costs. In diesel engines, an increasingly popular method is the admixture of propane-butane. This follows because of the price of the fuel as well as to improve the efficiency of combustion. With the development of this type of dual fuel power seems to be a reasonable study of the effects of LPG to generate noise and vibration, as well as an attempt to evaluate the combustion process. Unfortunately, too much addition of LPG causes a phenomenon called knock consisting in abnormal, uneven, explosive combustion of fuels in reciprocating engines. This phenomenon may lead to a reduction in engine performance and permanent damage. Control of the knock detection uses vibration acceleration sensors recording the high frequency ranges. Within the framework of the research conducted by the team of authors, an attempt was made to compare the vibroacoustic signals originating from the commercial knocking sensor with a three-axis acceleration sensor. These signals were subject to a quick Fourier transform in the purpose of analysing the amplitude spectra.

  19. DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization

    Energy Technology Data Exchange (ETDEWEB)

    Stockinger, Kurt; Shalf, John; Bethel, Wes; Wu, Kesheng

    2005-02-04

    We describe a new approach to scalable data analysis that enables scientists to manage the explosion in size and complexity of scientific data produced by experiments and simulations. Our approach uses a novel combination of efficient query technology and visualization infrastructure. The combination of bit map indexing, which is a data management technology that accelerates queries on large scientific datasets, with a visualization pipeline for generating images of abstract data results in a tool suitable for use by scientists in fields where data size and complexity poses a barrier to efficient analysis. Our architecture and implementation, which we call DEX (short for dexterous data explorer), directly addresses the problem of ''too much data'' by focusing analysis on data deemed to be ''scientifically interesting'' via a user-specified selection criteria. The architectural concepts and implementation are applicable to wide variety of scientific data analysis and visualization applications. This paper presents an architectural overview of the system along with an analysis showing substantial performance over traditional visualization pipelines. While performance gains are a significant result, even more important is the new functionality not present in any visualization analysis software--namely the ability to perform interactive, multi-dimensional queries to refine regions of interest that are later used as input to analysis or visualization.

  20. Structural Performance Assessment Based on Statistical and Wavelet Analysis of Acceleration Measurements of a Building during an Earthquake

    Directory of Open Access Journals (Sweden)

    Mosbeh R. Kaloop

    2016-01-01

    Full Text Available This study introduces the analysis of structural health monitoring (SHM system based on acceleration measurements during an earthquake. The SHM system is applied to assess the performance investigation of the administration building in Seoul National University of Education, South Korea. The statistical and wavelet analysis methods are applied to investigate and assess the performance of the building during an earthquake shaking which took place on March 31, 2014. The results indicate that (1 the acceleration, displacement, and torsional responses of the roof recording point on the top floor of the building are more dominant in the X direction; (2 the rotation of the building has occurred at the base recording point; (3 95% of the energy content of the building response is shown in the dominant frequency range (6.25–25 Hz; (4 the wavelet spectrum illustrates that the roof vibration is more obvious and dominant during the shaking; and (5 the wavelet spectrum reveals the elasticity responses of the structure during the earthquake shaking.

  1. Shielding analysis of proton therapy accelerators: a demonstration using Monte Carlo-generated source terms and attenuation lengths.

    Science.gov (United States)

    Lai, Bo-Lun; Sheu, Rong-Jiun; Lin, Uei-Tyng

    2015-05-01

    Monte Carlo simulations are generally considered the most accurate method for complex accelerator shielding analysis. Simplified models based on point-source line-of-sight approximation are often preferable in practice because they are intuitive and easy to use. A set of shielding data, including source terms and attenuation lengths for several common targets (iron, graphite, tissue, and copper) and shielding materials (concrete, iron, and lead) were generated by performing Monte Carlo simulations for 100-300 MeV protons. Possible applications and a proper use of the data set were demonstrated through a practical case study, in which shielding analysis on a typical proton treatment room was conducted. A thorough and consistent comparison between the predictions of our point-source line-of-sight model and those obtained by Monte Carlo simulations for a 360° dose distribution around the room perimeter showed that the data set can yield fairly accurate or conservative estimates for the transmitted doses, except for those near the maze exit. In addition, this study demonstrated that appropriate coupling between the generated source term and empirical formulae for radiation streaming can be used to predict a reasonable dose distribution along the maze. This case study proved the effectiveness and advantage of applying the data set to a quick shielding design and dose evaluation for proton therapy accelerators. PMID:25811254

  2. Accelerating Value Creation with Accelerators

    DEFF Research Database (Denmark)

    Jonsson, Eythor Ivar

    2015-01-01

    accelerator programs. Microsoft runs accelerators in seven different countries. Accelerators have grown out of the infancy stage and are now an accepted approach to develop new ventures based on cutting-edge technology like the internet of things, mobile technology, big data and virtual reality. It is also...... with the traditional audit and legal universes and industries are examples of emerging potentials both from a research and business point of view to exploit and explore further. The accelerator approach may therefore be an Idea Watch to consider, no matter which industry you are in, because in essence accelerators...

  3. Accelerator mass spectrometry analysis of aroma compound absorption in plastic packaging materials

    Science.gov (United States)

    Stenström, Kristina; Erlandsson, Bengt; Hellborg, Ragnar; Wiebert, Anders; Skog, Göran; Nielsen, Tim

    1994-05-01

    Absorption of aroma compounds in plastic packaging materials may affect the taste of the packaged food and it may also change the quality of the packaging material. A method to determine the aroma compound absorption in polymers by accelerator mass spectrometry (AMS) is being developed at the Lund Pelletron AMS facility. The high sensitivity of the AMS method makes it possible to study these phenomena under realistic conditions. As a first test low density polyethylene exposed to 14C-doped ethyl acetate is examined. After converting the polymer samples with the absorbed aroma compounds to graphite, the {14C }/{13C } ratio of the samples is measured by the AMS system and the degree of aroma compound absorption is established. The results are compared with those obtained by supercritical fluid extraction coupled to gas chromatography (SFE-GC).

  4. Stochastic Modeling and Analysis of Multiple Nonlinear Accelerated Degradation Processes through Information Fusion.

    Science.gov (United States)

    Sun, Fuqiang; Liu, Le; Li, Xiaoyang; Liao, Haitao

    2016-01-01

    Accelerated degradation testing (ADT) is an efficient technique for evaluating the lifetime of a highly reliable product whose underlying failure process may be traced by the degradation of the product's performance parameters with time. However, most research on ADT mainly focuses on a single performance parameter. In reality, the performance of a modern product is usually characterized by multiple parameters, and the degradation paths are usually nonlinear. To address such problems, this paper develops a new s-dependent nonlinear ADT model for products with multiple performance parameters using a general Wiener process and copulas. The general Wiener process models the nonlinear ADT data, and the dependency among different degradation measures is analyzed using the copula method. An engineering case study on a tuner's ADT data is conducted to demonstrate the effectiveness of the proposed method. The results illustrate that the proposed method is quite effective in estimating the lifetime of a product with s-dependent performance parameters. PMID:27509499

  5. The application software of the CERN PS accelerator controls system - analysis of its cost and resources

    International Nuclear Information System (INIS)

    The CERN PS accelerators have evolved into one of the world's most sophisticated high energy physics facility. The variety of beams and their high repetition rate means that a most sophisticated controls system is required. This reflects on the application software. At the time of the completion of the new control system, nearly 1000 programs, amounting to around 450 000 lines of code, have been developed at the cost of approximately 120 man-years. The span of this software ranges from real-time application programs to special purpose development and management tools. This paper documents the cost, resources and production of this software project. These are analyzed in terms of the structure of the application software. Rules-of-thumb are suggested for estimating the required effort at various phases of the project and to define the implementation strategy. (orig.)

  6. Analysis of factors responsible for the accelerated creep rupture of 12% Cr martensitic steel weld joints

    Science.gov (United States)

    Kudryavtsev, A. S.; Okhapkin, K. A.; Mikhailov, M. S.; Skutin, V. S.; Zubova, G. E.; Fedotov, B. V.

    2016-06-01

    In the process of the investigation of the heat resistance of a 0.07C-12Cr-Ni-Mo-V-Nb steel of the martensitic-ferritic class, a reduction was revealed in the long-term strength of its welded joints to below the level of the strength of the base metal. To establish the causes for the accelerated failure of the welded joints, an imitation of the thermal cycles was carried out that produce the structure of the heataffected zone using a dilatometer. In the samples with the structure that corresponds to that of the heataffected zone, a local zone of softening was revealed. The investigations of the metal structure using transmission electron microscopy have shown that the reduction in the creep rupture strength was caused by structural changes under the conditions of the thermal cycle of welding upon the staying of the steel in the temperature range between the Ac 1 and Ac 3 points.

  7. An accelerated buoyancy adhesion assay combined with 3-D morphometric analysis for assessing osteoblast adhesion on microgrooved substrata.

    Science.gov (United States)

    Sobral, J M; Malheiro, V N; Clyne, T W; Harris, J; Rezk, R; O'Neill, W; Markaki, A E

    2016-07-01

    An accelerated negative buoyancy method has been developed to assess cell adhesion strength. This method has been used in conjunction with 3-D morphometric analysis to understand the effects of surface topology on cell response. Aligned micro-grooved surface topographies (with a range of groove depths) were produced on stainless steel 316L substrates by laser ablation. An investigation was carried out on the effect of the micro-grooved surface topography on cell adhesion strength, cell and nucleus volumes, cell phenotypic expression and attachment patterns. Increased hydrophobicity and anisotropic wettability was observed on surfaces with deeper grooves. A reduction was noted in cell volume, projected areas and adhesion sites for deeper grooves, linked to lower cell proliferation and differentiation rates and also to reduced adhesion strength. The results suggest that the centrifugation assay combined with three-dimensional cell morphometric analysis has considerable potential for obtaining improved understanding of the cell/substrate interface. PMID:26773651

  8. ANALYSIS OF ACCELERATED LIFE TESTING USING LOG-LOGISTIC GEOMETRIC PROCESS MODEL IN CASE OF CENSORED DATA

    Directory of Open Access Journals (Sweden)

    S. SAXENA

    2013-07-01

    Full Text Available Geometric process model has been used in a variety of situations such as the determination of the optimal replacement policy and the optimal inspection-repair replacement policy for standby systems, and the analysis of data with trends. This study deals with the analysis of accelerated life testing for Log-Logistic distribution using geometric process model. The case of type-I censoring is considered in this study. It is assumed that the lifetimes under increasing stress levels form a geometric process. The maximum likelihood estimates of the parameters and their confidence intervals using the asymptotic method are derived. The performance of the estimators is evaluated by a simulation study with different pre-fixed parameters.

  9. SU-E-T-144: Effective Analysis of VMAT QA Generated Trajectory Log Files for Medical Accelerator Predictive Maintenance

    International Nuclear Information System (INIS)

    Purpose: To determine the effectiveness of SPC analysis for a model predictive maintenance process that uses accelerator generated parameter and performance data contained in trajectory log files. Methods: Each trajectory file is decoded and a total of 131 axes positions are recorded (collimator jaw position, gantry angle, each MLC, etc.). This raw data is processed and either axis positions are extracted at critical points during the delivery or positional change over time is used to determine axis velocity. The focus of our analysis is the accuracy, reproducibility and fidelity of each axis. A reference positional trace of the gantry and each MLC is used as a motion baseline for cross correlation (CC) analysis. A total of 494 parameters (482 MLC related) were analyzed using Individual and Moving Range (I/MR) charts. The chart limits were calculated using a hybrid technique that included the use of the standard 3σ limits and parameter/system specifications. Synthetic errors/changes were introduced to determine the initial effectiveness of I/MR charts in detecting relevant changes in operating parameters. The magnitude of the synthetic errors/changes was based on: TG-142 and published analysis of VMAT delivery accuracy. Results: All errors introduced were detected. Synthetic positional errors of 2mm for collimator jaw and MLC carriage exceeded the chart limits. Gantry speed and each MLC speed are analyzed at two different points in the delivery. Simulated Gantry speed error (0.2 deg/sec) and MLC speed error (0.1 cm/sec) exceeded the speed chart limits. Gantry position error of 0.2 deg was detected by the CC maximum value charts. The MLC position error of 0.1 cm was detected by the CC maximum value location charts for every MLC. Conclusion: SPC I/MR evaluation of trajectory log file parameters may be effective in providing an early warning of performance degradation or component failure for medical accelerator systems

  10. Laser accelerator

    OpenAIRE

    Vigil, Ricardo

    2014-01-01

    Approved for public release; distribution is unlimited In 1979,W. B. Colson and S. K. Ride proposed a new kind of electron accelerator using a uniform magnetic field in combination with a circularly-polarized laser field. A key concept is to couple the oscillating electric field to the electron’s motion so that acceleration is sustained. This dissertation investigates the performance of the proposed laser accelerator using modern high powered lasers and mag-netic fields that are significan...

  11. Sensitivity analysis in multipole-accelerated panel methods for potential flow

    Science.gov (United States)

    Leathrum, James F., Jr.

    1995-01-01

    In the design of an airframe, the effect of changing the geometry on resulting computations is necessary for design optimization. The geometry is defined in terms of a series of design variables, including design variables to define the wing planform, tail, canard, pylon, and nacelle. Design optimization in this research is based on how these design variable affect the potential flow. The potential flow is computed as a function of the geometry and location of a series of panels describing the airframe, which are in turn a function of the design variables. Multipole accelerated panel methods improve the computational complexity of the problem and thus are an attractive approach. To utilize the methods in design optimization, it was necessary to define the appropriate sensitivity derivatives. The overhead incurred from finding the sensitivity derivatives in conjunction with the original computation should be small. This research developed the background for multipole-accelerated panel methods and the framework for finding sensitivity derivatives in the methods. Potential flow panel codes are commonly used for powered-lift aerodynamic predictions for three dimensional geometries. Given an airframe which has been discretized into a series of panels to define the airframe geometry, potential is computed as a function of the influence of all panels on all other panels. This is a computationally intensive problem for which efficient solutions are desired to improve the computational time and to allow greater resolution by use of more panels. One such solution is the use of hierarchical multipole methods which entail approximations of the effects of far-field terms. Hierarchical multipole methods have become prevalent in molecular dynamics and gravitational physics, and have been introduced into the fields of capacitance calculations, computational fluid dynamics, and electromagnetics. The methods utilize multipole expansions to describe the effect of bodies (i

  12. Magnetic field analysis for superferric accelerator magnets using elliptic multipoles and advantages

    International Nuclear Information System (INIS)

    Full text: FAIR (Facility for Antiproton and Ion Research) will build a set of accelerators and storage rings at GSI. Some of them transport charged particle beams of elliptical cross section. Two-dimensional magnetic field calculations as well as magnetic measurements provide precise field information, which is used to improve the properties of the machines using numerical simulations. We develop elliptical multipoles fulfilling Laplace's equation, which enable us to describe the field within the whole aperture consistently. This requires to find a complete set of particular solutions. This selection is not so obvious since the Laplacian in elliptic coordinates has different properties as compared to that of polar coordinates. We illustrate the advantage of this data representation on the FEM calculations performed during the magnet development along with an approach to measure such fields using rotating coils. The derivation of the field representation in elliptic coordinates from the field data measured on circles necessitates the conversion from circular to elliptic multipoles and the solution of overdetermined systems of equations for the expansions coefficients. (author)

  13. Stochastic Modeling and Analysis of Multiple Nonlinear Accelerated Degradation Processes through Information Fusion

    Science.gov (United States)

    Sun, Fuqiang; Liu, Le; Li, Xiaoyang; Liao, Haitao

    2016-01-01

    Accelerated degradation testing (ADT) is an efficient technique for evaluating the lifetime of a highly reliable product whose underlying failure process may be traced by the degradation of the product’s performance parameters with time. However, most research on ADT mainly focuses on a single performance parameter. In reality, the performance of a modern product is usually characterized by multiple parameters, and the degradation paths are usually nonlinear. To address such problems, this paper develops a new s-dependent nonlinear ADT model for products with multiple performance parameters using a general Wiener process and copulas. The general Wiener process models the nonlinear ADT data, and the dependency among different degradation measures is analyzed using the copula method. An engineering case study on a tuner’s ADT data is conducted to demonstrate the effectiveness of the proposed method. The results illustrate that the proposed method is quite effective in estimating the lifetime of a product with s-dependent performance parameters. PMID:27509499

  14. Analysis of accelerated death benefit claims at a Japanese life insurance company.

    Science.gov (United States)

    Kobayashi, Miyoharu; Kudomi, Hiroyuki

    2002-01-01

    We studied accelerated death benefit (ADB) claims at the Dai-ichi Mutual Life Insurance Company (Dai-ichi Life). The ADB provision is designed to pay all or a portion of the death benefit if the insured is expected to die within 6 months. Dai-ichi Life paid 243 ADB claims and did not pay 17 ADB claims between December 1994 and March 1998. Of the 260 ADB claims, 253 (97.3%) were caused by malignant neoplasm, 2 by intracranial hemorrhage, 2 by angina pectoris, 1 by dilated cardiomyopathy, 1 by hepatic cirrhosis, and 1 by bleeding gastric ulcer. The age range of the 243 paid claims at the time when the attendant physician predicted a life expectancy below 6 months was 21.6-72.6 years (48.7 +/- 8.7 years [Mean +/- SD]). By the end of March 2000, 236 cases were followed up among the above 243 paid ADB claims. Of the 236 followed-up cases, 149 (63.1%) died within 6 months and 203 (86.0%) died within 1 year. The range of survival periods of these 236 cases was 6-1516 days (210 +/- 237 days). Of the 217 dead cases due to malignant neoplasm, 45 (20.7%) died of gastric cancer, 44 (20.3%) of lung cancer, 24 (11.1%) of liver cancer, 16 (7.4%) of colon cancer, 13 (6.0%) of rectum cancer, and 12 (5.5%) of pancreatic cancer.

  15. Analysis of endocardial acceleration during intraoperative optimization of cardiac resynchronization therapy

    Science.gov (United States)

    Hernandez, Alfredo I.; Ziglio, Filippo; Amblard, Amel; Senhadji, Lotfi; Leclercq, Christophe

    2013-01-01

    Cardiac resynchronization therapy (CRT) is the therapy of choice for selected patients suffering from drug-refractory congestive heart failure and presenting an interventricular desynchronization. CRT is delivered by an implantable biventricular pacemaker, which stimulates the right atrium and both ventricles at specific timings. The optimization and personalization of this therapy requires to quantify both the electrical and the mechanical cardiac functions during the intraoperative and postoperative phases. The objective of this paper is to evaluate the feasibility of the calculation of features extracted from endocardial acceleration (EA) signals and the potential utility of these features for the intraoperative optimization of CRT. Endocardial intraoperative data from one patient are analyzed for 33 different pacing configurations, including changes in the atrio-ventricular and inter-ventricular delays and different ventricular stimulation sites. The main EA features are extracted for each pacing configuration and analyzed so as to estimate the intra-configuration and inter-configuration variability. Results show the feasibility of the proposed approach and suggest the potential utility of EA for intraoperative monitoring of the cardiac function and defining optimal, adaptive pacing configurations. PMID:24111356

  16. An analysis of spatially varying turbulent Prandtl number in a flow with local acceleration and deceleration

    Science.gov (United States)

    Jung, Eunbum; Lee, Wook; Kang, Seongwon; Iaccarino, Gianluca

    2015-11-01

    The turbulent Prandtl number (Prt) is an important parameter in turbulent flows used in many engineering models for heat transfer. In the present study, spatial variation of Prt in a wall-bounded turbulent flow is investigated using DNS. We derived a form of Prt applicable to a general flow configuration, using the least-square method in a manner consistent with the turbulent viscosity model in LES. For a flow subject to local acceleration and deceleration induced by the wall geometry, we performed a parametric study for the Reynolds number, Prandtl number and a geometric factor using DNS. A comparison of the data from DNS and RANS with a constant Prt indicates the potential of improved RANS predictions using the present variable Prt subject to the local flow field. Also, it is observed that the local pressure gradient has an important effect on the Prt field. From the flow statistics, a few flow variables showing higher correlations with Prt are identified. An elementary model for Prt is devised, and used for RANS prediction producing a more accurate prediction of the heat transfer rate. Corresponding author

  17. Preliminary neutronics design analysis on accelerator driven subcritical reactor for nuclear waste transmutation

    International Nuclear Information System (INIS)

    By taking minor actinides (MA) transmutation performance as evaluation index, preliminary neutronics design analyses were performed on ADS-NWT which is a lead-alloy cooled accelerator driven subcritical reactor for nuclear waste transmutation. In the specific design, liquid lead-bismuth eutectic (LBE) and transuranic metallic dispersion fuel were used as coolant and a fuel of ADS-NWT, respectively. The neutronics calculations and analyses were performed by using CAD-based multi-functional 4D neutronics and radiation simulation system named VisualBUS and the nuclear data library HENDL (Hybrid Evaluated Nuclear Data Library). The preliminary results showed that based on specific deign of MA/Pu volume ratio of 7 : 3, the transmutation rate of MA was approximately 650 kg/a, the high thermal reactor power output was ∼1000 MW when energy self-sustaining was satisfied and relatively deep subcriticality and negative reactivity coefficients made sure of good inherent safety of ADS-NWT. (authors)

  18. A scientific and statistical analysis of accelerated aging for pharmaceuticals. Part 1: accuracy of fitting methods.

    Science.gov (United States)

    Waterman, Kenneth C; Swanson, Jon T; Lippold, Blake L

    2014-10-01

    Three competing mathematical fitting models (a point-by-point estimation method, a linear fit method, and an isoconversion method) of chemical stability (related substance growth) when using high temperature data to predict room temperature shelf-life were employed in a detailed comparison. In each case, complex degradant formation behavior was analyzed by both exponential and linear forms of the Arrhenius equation. A hypothetical reaction was used where a drug (A) degrades to a primary degradant (B), which in turn degrades to a secondary degradation product (C). Calculated data with the fitting models were compared with the projected room-temperature shelf-lives of B and C, using one to four time points (in addition to the origin) for each of three accelerated temperatures. Isoconversion methods were found to provide more accurate estimates of shelf-life at ambient conditions. Of the methods for estimating isoconversion, bracketing the specification limit at each condition produced the best estimates and was considerably more accurate than when extrapolation was required. Good estimates of isoconversion produced similar shelf-life estimates fitting either linear or nonlinear forms of the Arrhenius equation, whereas poor isoconversion estimates favored one method or the other depending on which condition was most in error. PMID:25043838

  19. Analysis of primordial nuclides in high purity copper with Accelerator Mass Spectrometry

    International Nuclear Information System (INIS)

    The sensitivity of experiments in rare event physics like neutrino or direct dark matter detection crucially depends on the background level. Therefore, all material surrounding the detectors requires low contamination of radionuclides to not create additional background. A significant contribution originates from the primordial actinides thorium and uranium and the progenies of their decay chains. At the Maier Leibnitz Laboratorium in Munich the applicability of ultra-sensitive Accelerator Mass Spectrometry (AMS) for the direct detection of thorium and uranium impurities in a copper matrix was tested for the first time. For this special purpose, Th and U were extracted from the ion source as a copper compound. Two different samples of copper and one sample of a copper alloy were investigated. The lowest concentrations achieved with these first AMS measurements were (1.4±0.6).10-11 g/g for thorium and (7±4).10-14 g/g for uranium which correspond to (56±16) μBq/kg and (0.9±0.5) μBq/kg, respectively. The particular requirements on the AMS technique and the developed measurement procedure are presented, followed by a discussion of the results of the first measurements.

  20. Analysis and comparison between electric and magnetic power couplers for accelerators in Free Electron Lasers (FEL)

    Science.gov (United States)

    Serpico, C.; Grudiev, A.; Vescovo, R.

    2016-10-01

    Free-electron lasers represent a new and exciting class of coherent optical sources possessing broad wavelength tunability and excellent optical-beam quality. The FERMI seeded free-electron laser (FEL), located at the Elettra laboratory in Trieste, is driven by a 200 m long, S-band linac: the high energy part of the linac is equipped with 6 m long backward traveling wave (BTW) structures. The structures have small iris radius and a nose cone geometry which allows for high gradient operation. Development of new high-gradient, S-band accelerating structures for the replacement of the existing BTWs is under consideration. This paper investigates two possible solutions for the RF power couplers suitable for a linac driven FEL which require reduced wakefields effects, high operating gradient and very high reliability. The first part of the manuscript focuses on the reduction of residual field asymmetries, while in the second analyzes RF performances, the peak surface fields and the expected breakdown rate. In the conclusion, two solutions are compared and pros and cons are highlighted.

  1. LIBO accelerates

    CERN Multimedia

    2002-01-01

    The prototype module of LIBO, a linear accelerator project designed for cancer therapy, has passed its first proton-beam acceleration test. In parallel a new version - LIBO-30 - is being developed, which promises to open up even more interesting avenues.

  2. Mediation Analysis with Survival Outcomes: Accelerated Failure Time Versus Proportional Hazards Models

    Directory of Open Access Journals (Sweden)

    Lois A Gelfand

    2016-03-01

    Full Text Available Objective: Survival time is an important type of outcome variable in treatment research. Currently, limited guidance is available regarding performing mediation analyses with survival outcomes, which generally do not have normally distributed errors, and contain unobserved (censored events. We present considerations for choosing an approach, using a comparison of semi-parametric proportional hazards (PH and fully parametric accelerated failure time (AFT approaches for illustration.Method: We compare PH and AFT models and procedures in their integration into mediation models and review their ability to produce coefficients that estimate causal effects. Using simulation studies modeling Weibull-distributed survival times, we compare statistical properties of mediation analyses incorporating PH and AFT approaches (employing SAS procedures PHREG and LIFEREG, respectively under varied data conditions, some including censoring. A simulated data set illustrates the findings.Results: AFT models integrate more easily than PH models into mediation models. Furthermore, mediation analyses incorporating LIFEREG produce coefficients that can estimate causal effects, and demonstrate superior statistical properties. Censoring introduces bias in the coefficient estimate representing the treatment effect on outcome – underestimation in LIFEREG, and overestimation in PHREG. With LIFEREG, this bias can be addressed using an alternative estimate obtained from combining other coefficients, whereas this is not possible with PHREG.Conclusions: When Weibull assumptions are not violated, there are compelling advantages to using LIFEREG over PHREG for mediation analyses involving survival-time outcomes. Irrespective of the procedures used, the interpretation of coefficients, effects of censoring on coefficient estimates, and statistical properties should be taken into account when reporting results.

  3. Analysis of breakdown on thermal and electrical measurements for SPIDER accelerating grids

    Energy Technology Data Exchange (ETDEWEB)

    Pesce, Alberto, E-mail: alberto.pesce@igi.cnr.it [Consorzio RFX - Associazione EURATOM-ENEA per la fusione, Corso Stati Uniti 4, 35127 Padova (Italy); Pomaro, Nicola [Consorzio RFX - Associazione EURATOM-ENEA per la fusione, Corso Stati Uniti 4, 35127 Padova (Italy)

    2011-10-15

    The PRIMA test facility, under realization in Padova, includes a full size plasma source prototype for ITER, called SPIDER (Source for the Production of Ions of Deuterium Extracted from Radio Frequency plasma). The effects of breakdown in the electrical insulation inside the ion source are analyzed with particular care to the embedded diagnostic system, i.e. the thermal and electrical measurements installed on the grids and ion source case and transferred by multipolar cables to the acquisition system, located inside the 100 kV insulated deck and hosting the ion source power supply, the signal conditioning and the acquisition cubicles. The breakdown affects strongly the measurements, so it has to be mitigated in order to guarantee adequate reliability of the whole measurement set. A parametric study has been carried out on a detailed circuital model for fast transients, implemented using SimPowerSystems{sup TM} tool of Matlab Simulink code. The model includes all the relevant conductors of the subsystems downstream the insulating transformer of the Accelerating Grids Power Supply (AGPS), i.e. the AGPS rectifier, the multipolar transmission line, the 100 kV High Voltage Deck, the ion source power supply and the ion source itself. In particular all the magnetic and capacitive couplings have been computed by a proper 2D fem model. The optimization of the cabling layout, of the wire screening and of the protection devices, like surge arresters and resistors, has been carried out through the accurate modeling of the circuit. The energy dissipated on each ion source surge arrester is estimated and adequate TSD (transient suppression devices) are selected. A peculiar and difficult to satisfy requirement is the high number of surges that the TSD has to withstand. Breakdowns between components polarized at different voltages have been considered, in order to inspect the worst condition during a breakdown.

  4. Time analysis of the slow neutron field generated by the accelerating tube downhole

    International Nuclear Information System (INIS)

    Pulsed neutron logging (PNL) consists in the irradiation of rocks around the well by a pulsed periodic flux of fast neutrons generated by a portable accelerating tube and detection of thermal neutrons during pauses between the neutron pulses. The main aim of the PNL is determining the time distribution of thermal neutrons in the well and formation. At present the PNL response is considered as the sum of two exponentially decaying components, one related to the well and another one - to rock formation: J(t) = A1 exp (-λ1t) + A2 exp (-λ2t) . This is a result of homogenization of a neutron field in the borehole and formation space which is characterized by complicated radial structure and heterogeneous neutron properties. The time base of measurements T is subdivided into a set consisting of I narrow time windows Δt and the PNL response is formed as the series of neutron registration events Ni for each time window Δt with number i =1 to I (time neutron spectrum). Presented is a noise-immune algorithm for decomposition of the experimental time neutron spectrum into two components using the following overdetermined system of equations: Ni - Δt (λ1 + λ2) Σk=i Nk + (Δt)2 λ1λ2 Σk=i Σj=k Nj + [T - (i - 1) Δt][J'(T) - (λ1 + λ2) J(T)]Δt - J(T) Δt 0. Two amplitudes and two time decay constants of these components give an information about the neutron absorption cross-section and porosity of rocks. Presented are physical characteristics of new Russian PNL tools and examples illustrating the processing of PNL in oil wells. (author)

  5. Development of Three-dimensional Reactor Analysis Code System for Accelerator-Driven System, ADS3D

    International Nuclear Information System (INIS)

    To investigate an Accelerator-Driven System (ADS) with sub-criticality control mechanism such as control rods or burnable poison, the ADS3D code has been developed on MARBLE which is a next generation reactor analysis code system developed by JAEA. In the past neutronics calculation for the ADS, JAEA employed RZ calculation models to realize efficient investigations. However, it was very difficult to model sub-criticality control mechanisms in RZ calculation models. The ADS3D code system is able to calculate the transportation of protons and neutrons, the burn-up calculation and the fuel exchange in three-dimensional calculation models. It means this code system can treat ADS concepts with sub-criticality control mechanism and makes it possible to investigate a new concept of ADS. (author)

  6. Error analysis of linear optics measurements via turn-by-turn beam position data in circular accelerators

    CERN Document Server

    Franchi, Andrea

    2016-01-01

    Many advanced techniques have been developed, tested and implemented in the last decades in almost all circular accelerators across the world to measure the linear optics. However, the greater availability and accuracy of beam diagnostics and the ever better correction of linear magnetic lattice imperfections (beta beating at 1% level and coupling at 0.1%) are reaching what seems to be the intrinsic accuracy and precision of different measurement techniques. This paper aims to highlight and quantify, when possible, the limitations of one standard method, the harmonic analysis of turn-by-turn beam position data. To this end, new analytic formulas for the evaluation of lattice parameters modified by focusing errors are derived. The unexpected conclusion of this study is that for the ESRF storage ring (and possibly for any third generation light source operating at ultra-low coupling and with similar diagnostics), measurement and correction of linear optics via orbit beam position data are to be preferred to the...

  7. Time-Stretch Accelerated Processor for Real-time, In-service, Signal Analysis

    DEFF Research Database (Denmark)

    Lonappan, Cejo K.; Buckley, Brandon W.; Adam, Jost;

    2014-01-01

    We demonstrate real-time, in-service, digital signal analysis of 10 Gbit/s data using a 1.2 Tbit/s burst-mode digital processor. The processor comprises a time-stretch front-end and a custom data acquisition and real-time signal processing back- end. Experimental demonstration of real-time, in......-service, signal integrity analysis of streaming video packets at 10 Gbit/s is presented....

  8. Accelerated partial-breast irradiation with interstitial implants. Analysis of factors affecting cosmetic outcome

    Energy Technology Data Exchange (ETDEWEB)

    Ott, Oliver J.; Lotter, Michael; Fietkau, Rainer; Strnad, Vratislav [University Hospital Erlangen (Germany). Dept. of Radiation Oncology

    2009-03-15

    Purpose: To analyze patient-, disease-, and treatment-related factors for their impact on cosmetic outcome (CO) after interstitial multicatheter accelerated partial-breast irradiation (APBI). Patients and Methods: Between April 2001 and January 2005, 171 patients with early breast cancer were recruited in Erlangen for this subanalysis of the German-Austrian APBI phase II-trial. 58% (99/171) of the patients received pulsed-dose-rate (PDR), and 42% (72/171) high-dose-rate (HDR) brachytherapy. Prescribed reference dose for HDR brachytherapy was 32 Gy in eight fractions of 4 Gy, twice daily. Prescribed reference dose in PDR brachytherapy was 49.8 Gy in 83 consecutive fractions of 0.6 Gy each hour. Total treatment time was 3-4 days. Endpoint of this evaluation was the CO, graded as excellent, good, fair, or poor. Patients were divided in two groups with an excellent (n = 102) or nonexcellent (n = 69) cosmetic result. Various factors were analyzed for their impact on excellent CO. Results: The median follow-up time was 52 months (range: 21-91 months). Cosmetic results were rated as excellent in 59.6% (102/171), good in 29.8% (51/171), fair in 9.9% (17/171), and poor in 0.6% (1/171). The initial cosmetic status was significantly worse for the nonexcellent CO group (p = 0.000). The percentage of patients who received PDR brachytherapy APBI was higher in the nonexcellent CO group (68.1% vs. 51%; p = 0.026). Acute toxicity was higher in the nonexcellent CO group (24.6% vs. 12.7%; p = 0.045). Furthermore, the presence of any late toxicity was found to be associated with a worse cosmetic result (65.2% vs. 18.6%; p = 0.000). In detail, the appearance of skin hyperpigmentation (p = 0.034), breast tissue fibrosis (p = 0.000), and telangiectasia (p = 0.000) had a negative impact on CO. Conclusion: The initial, surgery-associated cosmetic status, brachytherapy modality, and the presence of acute and late toxicities were found to have an impact on overall CO. Our data have proven

  9. Retrospective analysis of linear accelerator output constancy checks using process control techniques.

    Science.gov (United States)

    Sanghangthum, Taweap; Suriyapee, Sivalee; Srisatit, Somyot; Pawlicki, Todd

    2013-01-01

    Shewhart control charts have previously been suggested as a process control tool for use in routine linear accelerator (linac) output verifications. However, a comprehensive approach to process control has not been investigated for linac output verifications. The purpose of this work is to investigate a comprehensive process control approach to linac output constancy quality assurance (QA). The RBA-3 dose constancy check was used to verify outputs of photon beams and electron beams delivered by a Varian Clinac 21EX linac. The data were collected during 2009 to 2010. Shewhart-type control charts, exponentially weighted moving average (EWMA) charts, and capability indices were applied to these processes. The Shewhart-type individuals chart (X-chart) was used and the number of data points used to calculate the control limits was varied. The parameters tested for the EWMA charts (smoothing parameter (λ) and the control limit width (L)) were λ = 0.05, L = 2.492; λ = 0.10, L = 2.703; and λ = 0.20, L = 2.860, as well as the number of points used to estimate the initial process mean and variation. Lastly, the number of in-control data points used to determine process capability (C(p)) and acceptability (C(pk)) were investigated, comparing the first in-control run to the longest in-control run of the process data. C(p) and C(pk) values greater than 1.0 were considered acceptable. The 95% confidence intervals were reported. The X-charts detected systematic errors (e.g., device setup errors). In-control run lengths on the X-charts varied from 5 to 30 output measurements (about one to seven months). EWMA charts showed in-control runs ranging from 9 to 33 output measurements (about two to eight months). The C(p) and C(pk) ratios are higher than 1.0 for all energies, except 12 and 20 MeV. However, 10 MV and 6, 9, and 16 MeV were in question when considering the 95% confidence limits. The X-chart should be calculated using 8-12 data points. For EWMA chart, using 4 data points

  10. Accelerated partial-breast irradiation with interstitial implants. Analysis of factors affecting cosmetic outcome

    International Nuclear Information System (INIS)

    Purpose: To analyze patient-, disease-, and treatment-related factors for their impact on cosmetic outcome (CO) after interstitial multicatheter accelerated partial-breast irradiation (APBI). Patients and Methods: Between April 2001 and January 2005, 171 patients with early breast cancer were recruited in Erlangen for this subanalysis of the German-Austrian APBI phase II-trial. 58% (99/171) of the patients received pulsed-dose-rate (PDR), and 42% (72/171) high-dose-rate (HDR) brachytherapy. Prescribed reference dose for HDR brachytherapy was 32 Gy in eight fractions of 4 Gy, twice daily. Prescribed reference dose in PDR brachytherapy was 49.8 Gy in 83 consecutive fractions of 0.6 Gy each hour. Total treatment time was 3-4 days. Endpoint of this evaluation was the CO, graded as excellent, good, fair, or poor. Patients were divided in two groups with an excellent (n = 102) or nonexcellent (n = 69) cosmetic result. Various factors were analyzed for their impact on excellent CO. Results: The median follow-up time was 52 months (range: 21-91 months). Cosmetic results were rated as excellent in 59.6% (102/171), good in 29.8% (51/171), fair in 9.9% (17/171), and poor in 0.6% (1/171). The initial cosmetic status was significantly worse for the nonexcellent CO group (p = 0.000). The percentage of patients who received PDR brachytherapy APBI was higher in the nonexcellent CO group (68.1% vs. 51%; p = 0.026). Acute toxicity was higher in the nonexcellent CO group (24.6% vs. 12.7%; p = 0.045). Furthermore, the presence of any late toxicity was found to be associated with a worse cosmetic result (65.2% vs. 18.6%; p = 0.000). In detail, the appearance of skin hyperpigmentation (p 0.034), breast tissue fibrosis (p = 0.000), and telangiectasia (p = 0.000) had a negative impact on CO. Conclusion: The initial, surgery-associated cosmetic status, brachytherapy modality, and the presence of acute and late toxicities were found to have an impact on overall CO. Our data have proven that

  11. Angular velocities, angular accelerations, and coriolis accelerations

    Science.gov (United States)

    Graybiel, A.

    1975-01-01

    Weightlessness, rotating environment, and mathematical analysis of Coriolis acceleration is described for man's biological effective force environments. Effects on the vestibular system are summarized, including the end organs, functional neurology, and input-output relations. Ground-based studies in preparation for space missions are examined, including functional tests, provocative tests, adaptive capacity tests, simulation studies, and antimotion sickness.

  12. Confronting Twin Paradox Acceleration

    Science.gov (United States)

    Murphy, Thomas W.

    2016-05-01

    The resolution to the classic twin paradox in special relativity rests on the asymmetry of acceleration. Yet most students are not exposed to a satisfactory analysis of what exactly happens during the acceleration phase that results in the nonaccelerated observer's more rapid aging. The simple treatment presented here offers both graphical and quantitative solutions to the problem, leading to the correct result that the acceleration-induced age gap is 2Lβ years when the one-way distance L is expressed in light-years and velocity β ≡v/c .

  13. Multidimensional analysis of suction feeding performance in fishes: fluid speed, acceleration, strike accuracy and the ingested volume of water.

    Science.gov (United States)

    Higham, Timothy E; Day, Steven W; Wainwright, Peter C

    2006-07-01

    Suction feeding fish draw prey into the mouth using a flow field that they generate external to the head. In this paper we present a multidimensional perspective on suction feeding performance that we illustrate in a comparative analysis of suction feeding ability in two members of Centrarchidae, the largemouth bass (Micropterus salmoides) and bluegill sunfish (Lepomis macrochirus). We present the first direct measurements of maximum fluid speed capacity, and we use this to calculate local fluid acceleration and volumetric flow rate. We also calculated the ingested volume and a novel metric of strike accuracy. In addition, we quantified for each species the effects of gape magnitude, time to peak gape, and swimming speed on features of the ingested volume of water. Digital particle image velocimetry (DPIV) and high-speed video were used to measure the flow in front of the mouths of three fish from each species in conjunction with a vertical laser sheet positioned on the mid-sagittal plane of the fish. From this we quantified the maximum fluid speed (in the earthbound and fish's frame of reference), acceleration and ingested volume. Our method for determining strike accuracy involved quantifying the location of the prey relative to the center of the parcel of ingested water. Bluegill sunfish generated higher fluid speeds in the earthbound frame of reference, accelerated the fluid faster, and were more accurate than largemouth bass. However, largemouth bass ingested a larger volume of water and generated a higher volumetric flow rate than bluegill sunfish. In addition, because largemouth bass swam faster during prey capture, they generated higher fluid speeds in the fish's frame of reference. Thus, while bluegill can exert higher drag forces on stationary prey items, largemouth bass more quickly close the distance between themselves and prey. The ingested volume and volumetric flow rate significantly increased as gape increased for both species, while time to peak

  14. Industrial applications of accelerator-based infrared sources: Analysis using infrared microspectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Bantignies, J.L.; Fuchs, G.; Wilhelm, C. [Elf Atochem, Pierre-Benite (France); Carr, G.L. [Brookhaven National Lab., Upton, NY (United States). National Synchrotron Light Source; Dumas, P. [Centre Univ. Paris-Sud, Orsay (France)

    1997-09-01

    Infrared Microspectroscopy, using a globar source, is now widely employed in the industrial environment, for the analysis of various materials. Since synchrotron radiation is a much brighter source, an enhancement of an order of magnitude in lateral resolution can be achieved. Thus, the combination of IR microspectroscopy and synchrotron radiation provides a powerful tool enabling sample regions only few microns size to be studied. This opens up the potential for analyzing small particles. Some examples for hair, bitumen and polymer are presented.

  15. Throughput Analysis for a High-Performance FPGA-Accelerated Real-Time Search Application

    Directory of Open Access Journals (Sweden)

    Wim Vanderbauwhede

    2012-01-01

    Full Text Available We propose an FPGA design for the relevancy computation part of a high-throughput real-time search application. The application matches terms in a stream of documents against a static profile, held in off-chip memory. We present a mathematical analysis of the throughput of the application and apply it to the problem of scaling the Bloom filter used to discard nonmatches.

  16. Coupled mechanical-electrostatic FE-BE analysis with FMM acceleration

    OpenAIRE

    Sabariego, Ruth,; Gyselinck, J.; Dular, P.; De Coster, Jeroen; Henrotte, François; HAMEYER, Kay

    2004-01-01

    This paper deals with the coupled mechanical-electrostatic analysis of a shunt capacitive MEMS switch. The mechanical and electrostatic parts of the prob- lem are modelled by the FE method and BE method, respectively. The fast multipole method is applied to reduce the storage requirements and the computational cost of the BE electrostatic model. An adaptive truncation expansion of the 3D Laplace Green function is employed. The strong interaction between the mechanical and electrostatic system...

  17. An efficient transcriptome analysis pipeline to accelerate venom peptide discovery and characterisation.

    Science.gov (United States)

    Prashanth, Jutty Rajan; Lewis, Richard J

    2015-12-01

    Transcriptome sequencing is now widely adopted as an efficient means to study the chemical diversity of venoms. To improve the efficiency of analysis of these large datasets, we have optimised an analysis pipeline for cone snail venom gland transcriptomes. The pipeline combines ConoSorter with sequence architecture-based elimination and similarity searching using BLAST to improve the accuracy of sequence identification and classification, while reducing requirements for manual intervention. As a proof-of-concept, we used this approach reanalysed three previously published cone snail transcriptomes from diverse dietary groups. Our pipeline method generated similar results to the published studies with significantly less manual intervention. We additionally found undiscovered sequences in the piscovorous Conus geographus and vermivorous Conus miles and identified sequences in incorrect superfamilies in the molluscivorus Conus marmoreus and C. geographus transcriptomes. Our results indicate that this method can improve toxin detection without extending analysis time. While this method was evaluated on cone snail transcriptomes it can be easily optimised to retrieve toxins from other venomous animals. PMID:26376071

  18. Mapping epistasis and environment × QTX interaction based on four -omics genotypes for the detected QTX loci controlling complex traits in tobacco

    Directory of Open Access Journals (Sweden)

    Liyuan Zhou

    2013-12-01

    Full Text Available Using newly developed methods and software, association mapping was conducted for chromium content and total sugar in tobacco leaf, based on four -omics datasets. Our objective was to collect data on genotype and phenotype for 60 leaf samples at four developmental stages, from three plant architectural positions and for three cultivars that were grown in two locations. Association mapping was conducted to detect genetic variants at quantitative trait SNP (QTS loci, quantitative trait transcript (QTT differences, quantitative trait protein (QTP variability, and quantitative trait metabolite (QTM changes, which can be summarized as QTX locus variation. The total heritabilities of the four -omics loci for both traits tested were 23.60% for epistasis and 15.26% for treatment interaction. Epistasis and environment × treatment interaction had important impacts on complex traits at all -omics levels. For decreasing chromium content and increasing total sugar in tobacco leaf, six methylated loci can be directly used for marker-assisted selection, and expression of ten QTTs, seven QTPs and six QTMs can be modified by selection or cultivation.

  19. Mapping epistasis and environment × QTX interaction based on four-omics genotypes for the detected QTX loci controlling complex traits in tobacco

    Institute of Scientific and Technical Information of China (English)

    Liyuan; Zhou; Ruiyuan; Li; Longjiang; Fan; Yuewei; Shi; Zhihong; Wang; Shengdong; Xie; Yijie; Gui; Xueliang; Ren; Jun; Zhu

    2013-01-01

    Using newly developed methods and software, association mapping was conducted for chromium content and total sugar in tobacco leaf, based on four-omics datasets. Our objective was to collect data on genotype and phenotype for 60 leaf samples at four developmental stages, from three plant architectural positions and for three cultivars that were grown in two locations. Association mapping was conducted to detect genetic variants at quantitative trait SNP(QTS) loci, quantitative trait transcript(QTT) differences,quantitative trait protein(QTP) variability, and quantitative trait metabolite(QTM) changes,which can be summarized as QTX locus variation. The total heritabilities of the four-omics loci for both traits tested were 23.60% for epistasis and 15.26% for treatment interaction.Epistasis and environment × treatment interaction had important impacts on complex traits at all-omics levels. For decreasing chromium content and increasing total sugar in tobacco leaf, six methylated loci can be directly used for marker-assisted selection, and expression of ten QTTs, seven QTPs and six QTMs can be modified by selection or cultivation.

  20. BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU

    Directory of Open Access Journals (Sweden)

    Ruibang Luo

    2014-06-01

    Full Text Available This paper reports an integrated solution, called BALSA, for the secondary analysis of next generation sequencing data; it exploits the computational power of GPU and an intricate memory management to give a fast and accurate analysis. From raw reads to variants (including SNPs and Indels, BALSA, using just a single computing node with a commodity GPU board, takes 5.5 h to process 50-fold whole genome sequencing (∼750 million 100 bp paired-end reads, or just 25 min for 210-fold whole exome sequencing. BALSA’s speed is rooted at its parallel algorithms to effectively exploit a GPU to speed up processes like alignment, realignment and statistical testing. BALSA incorporates a 16-genotype model to support the calling of SNPs and Indels and achieves competitive variant calling accuracy and sensitivity when compared to the ensemble of six popular variant callers. BALSA also supports efficient identification of somatic SNVs and CNVs; experiments showed that BALSA recovers all the previously validated somatic SNVs and CNVs, and it is more sensitive for somatic Indel detection. BALSA outputs variants in VCF format. A pileup-like SNAPSHOT format, while maintaining the same fidelity as BAM in variant calling, enables efficient storage and indexing, and facilitates the App development of downstream analyses. BALSA is available at: http://sourceforge.net/p/balsa.

  1. In silico analysis of gene expression profiles in the olfactory mucosae of aging senescence-accelerated mice.

    Science.gov (United States)

    Getchell, Thomas V; Peng, Xuejun; Green, C Paul; Stromberg, Arnold J; Chen, Kuey-Chu; Mattson, Mark P; Getchell, Marilyn L

    2004-08-01

    We utilized high-density Affymetrix oligonucleotide arrays to investigate gene expression in the olfactory mucosae of near age-matched aging senescence-accelerated mice (SAM). The senescence-prone (SAMP) strain has a significantly shorter lifespan than does the senescence-resistant (SAMR) strain. To analyze our data, we applied biostatistical methods that included a correlation analysis to evaluate sources of methodologic and biological variability; a two-sided t-test to identify a subpopulation of Present genes with a biologically relevant P-value SAMRs (SAMR-Os, 12.5 months). Volcano plots related the variability in the mean hybridization signals as determined by the two-sided t-test to fold changes in gene expression. The genes were categorized into the six functional groups used previously in gene profiling experiments to identify candidate genes that may be relevant for senescence at the genomic and cellular levels in the aging mouse brain (Lee et al. [2000] Nat Genet 25:294-297) and in the olfactory mucosa (Getchell et al. [2003] Ageing Res Rev 2:211-243), which serves several functions that include chemosensory detection, immune barrier function, xenobiotic metabolism, and neurogenesis. Because SAMR-Os and SAMP-Os have substantially different median lifespans, we related the rate constant alpha in the Gompertz equation on aging to intrinsic as opposed to environmental mechanisms of senescence based on our analysis of genes modulated during aging in the olfactory mucosa. PMID:15248299

  2. SU-E-T-627: Failure Modes and Effect Analysis for Monthly Quality Assurance of Linear Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Xie, J [Fudan University shanghai cancer center, Shanghai, Shanghai (China); Xiao, Y [Thomas Jefferson UniversityHospital, Philadelphia, PA (United States); Wang, J; Peng, J; Lu, S [Fudan University Shanghai Cancer Center, Shanghai, Shanghai (China); Hu, W [Fudan University Shanghai Caner Center, Shanghai, Shanghai (China)

    2014-06-15

    Purpose: To develop and implement a failure mode and effect analysis (FMEA) on routine monthly Quality Assurance (QA) tests (physical tests part) of linear accelerator. Methods: A systematic failure mode and effect analysis method was performed for monthly QA procedures. A detailed process tree of monthly QA was created and potential failure modes were defined. Each failure mode may have many influencing factors. For each factor, a risk probability number (RPN) was calculated from the product of probability of occurrence (O), the severity of effect (S), and detectability of the failure (D). The RPN scores are in a range of 1 to 1000, with higher scores indicating stronger correlation to a given influencing factor of a failure mode. Five medical physicists in our institution were responsible to discuss and to define the O, S, D values. Results: 15 possible failure modes were identified and all RPN scores of all influencing factors of these 15 failue modes were from 8 to 150, and the checklist of FMEA in monthly QA was drawn. The system showed consistent and accurate response to erroneous conditions. Conclusion: The influencing factors of RPN greater than 50 were considered as highly-correlated factors of a certain out-oftolerance monthly QA test. FMEA is a fast and flexible tool to develop an implement a quality management (QM) frame work of monthly QA, which improved the QA efficiency of our QA team. The FMEA work may incorporate more quantification and monitoring fuctions in future.

  3. SU-E-T-627: Failure Modes and Effect Analysis for Monthly Quality Assurance of Linear Accelerator

    International Nuclear Information System (INIS)

    Purpose: To develop and implement a failure mode and effect analysis (FMEA) on routine monthly Quality Assurance (QA) tests (physical tests part) of linear accelerator. Methods: A systematic failure mode and effect analysis method was performed for monthly QA procedures. A detailed process tree of monthly QA was created and potential failure modes were defined. Each failure mode may have many influencing factors. For each factor, a risk probability number (RPN) was calculated from the product of probability of occurrence (O), the severity of effect (S), and detectability of the failure (D). The RPN scores are in a range of 1 to 1000, with higher scores indicating stronger correlation to a given influencing factor of a failure mode. Five medical physicists in our institution were responsible to discuss and to define the O, S, D values. Results: 15 possible failure modes were identified and all RPN scores of all influencing factors of these 15 failue modes were from 8 to 150, and the checklist of FMEA in monthly QA was drawn. The system showed consistent and accurate response to erroneous conditions. Conclusion: The influencing factors of RPN greater than 50 were considered as highly-correlated factors of a certain out-oftolerance monthly QA test. FMEA is a fast and flexible tool to develop an implement a quality management (QM) frame work of monthly QA, which improved the QA efficiency of our QA team. The FMEA work may incorporate more quantification and monitoring fuctions in future

  4. Epistasis between MicroRNAs 155 and 146a during T Cell-Mediated Antitumor Immunity

    Directory of Open Access Journals (Sweden)

    Thomas B. Huffaker

    2012-12-01

    Full Text Available An increased understanding of antitumor immunity is necessary for improving cell-based immunotherapies against human cancers. Here, we investigated the roles of two immune system-expressed microRNAs (miRNAs, miR-155 and miR-146a, in the regulation of antitumor immune responses. Our results indicate that miR-155 promotes and miR-146a inhibits interferon γ (IFNγ responses by T cells and reduces solid tumor growth in vivo. Using a double-knockout (DKO mouse strain deficient in both miR-155 and miR-146a, we have also identified an epistatic relationship between these two miRNAs. DKO mice had defective T cell responses and tumor growth phenotypes similar to miR-155−/− mice. Further analysis of the T cell compartment revealed that miR-155 modulates IFNγ expression through a mechanism involving repression of Ship1. Our work reveals critical roles for miRNAs in the reciprocal regulation of CD4+ and CD8+ T cell-mediated antitumor immunity and demonstrates the dominant nature of miR-155 during its promotion of immune responses.

  5. Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1.

    Science.gov (United States)

    Moradigaravand, Danesh; Kouyos, Roger; Hinkley, Trevor; Haddad, Mojgan; Petropoulos, Christos J; Engelstädter, Jan; Bonhoeffer, Sebastian

    2014-06-01

    Recombination has the potential to facilitate adaptation. In spite of the substantial body of theory on the impact of recombination on the evolutionary dynamics of adapting populations, empirical evidence to test these theories is still scarce. We examined the effect of recombination on adaptation on a large-scale empirical fitness landscape in HIV-1 based on in vitro fitness measurements. Our results indicate that recombination substantially increases the rate of adaptation under a wide range of parameter values for population size, mutation rate and recombination rate. The accelerating effect of recombination is stronger for intermediate mutation rates but increases in a monotonic way with the recombination rates and population sizes that we examined. We also found that both fitness effects of individual mutations and epistatic fitness interactions cause recombination to accelerate adaptation. The estimated epistasis in the adapting populations is significantly negative. Our results highlight the importance of recombination in the evolution of HIV-I.

  6. Analysis of asphalt pavement structural response from an accelerated loading test

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    This study was to compare theoretical calculation and practical measurement structure response of asphalt pavement. Analysis of the pavement layer moduli was determined from a Back-calculation of Falling Weight Deflectometer (FWD) data and the measured stiffness moduli of asphalt layer cores. The pavement response was calculated using a theoretical model and the measured strain response at the bottom different layers.Layered elastic theory was used to back-calculate the layer moduli and three different theory models were used to forward calculate the strain and deflection. The models were: Layered Elastic Theory (LET), the Method of Equivalent Thicknesses (MET) with linear elastic and the Finite Element Method (FEM) where asphalt layer may be viscoelastic. The results showed that the calculation structure response from FEM was consistent with measured results.

  7. Detection of epitasis, additive and dominance variation in rice (Oryza sativa L. using triple test cross analysis

    Directory of Open Access Journals (Sweden)

    N.R. Koli, Chandra Prakash, R.K. Mahawar ,B.L.Kumhar and S.S.Punia

    2014-12-01

    Full Text Available An investigation was carried out to detect the epistasis, additive and dominance components of genetic variance for yield and yield attributing traits through triple test cross analysis, involving three testers (P1, P2 and their F1 and ten lines of rice. The estimate of total epistasis was found non-significant for all the traits while partitioning of total epistasis revealed that, i type of epistasis (additive x additive were highly significant for yield per plant, plant height, number of panicle per meter square, panicle length and number of grains per panicle. The additive (D and dominance (H effects were highly significant for yield per plant, plant height, panicle length, number of grains per panicle and 1000 grain weight. The degree of dominance (H/D1/2 was less than the unity indicating, partial dominance for plant height, panicles / m2 and 1000 grain weight whereas, yield per plant, panicle length and number of grains per panicle indicating over dominance (>1 . Since, the predominance components of epistasis in autogamous crop is additive x additive (i type, we suggest that the selection may be delayed to later generation for the improvement of yield through yield components in rice.

  8. Modelling, analysis, and acceleration of a printed circuit board fabrication process

    Indian Academy of Sciences (India)

    K S Aithal; Y Narahari; E Manjunath

    2001-10-01

    Product design and fabrication constitute an important business activity in any manufacturing firm. Designing an optimized product fabrication process is an important problem in itself and is of significant practical and research interest. In this paper, we look into a printed circuit board (PCB) fabrication process and investigate ways in which the fabrication cycle time can be minimized. Single class queueing networks constitute the modelling framework for our study. The model developed in this paper and the analysis experiments carried out are based on extensive data collected on a PCB fabrication company located in Bangalore, India. This is a representative PCB fabrication company involving multiple, concurrent fabrication works with contention for human/technical resources. Our model seeks to capture faithfully the flow of the fabrication process in this company and such other organisations, using queueing networks. Using the model developed, we explore how the cycle times can be reduced using input control, load balancing, and variability reduction. The model presented is sufficiently generic and conceptual; its scope extends beyond that of a PCB fabrication organization.

  9. Accelerated fluctuation analysis by graphic cards and complex pattern formation in financial markets

    Science.gov (United States)

    Preis, Tobias; Virnau, Peter; Paul, Wolfgang; Schneider, Johannes J.

    2009-09-01

    The compute unified device architecture is an almost conventional programming approach for managing computations on a graphics processing unit (GPU) as a data-parallel computing device. With a maximum number of 240 cores in combination with a high memory bandwidth, a recent GPU offers resources for computational physics. We apply this technology to methods of fluctuation analysis, which includes determination of the scaling behavior of a stochastic process and the equilibrium autocorrelation function. Additionally, the recently introduced pattern formation conformity (Preis T et al 2008 Europhys. Lett. 82 68005), which quantifies pattern-based complex short-time correlations of a time series, is calculated on a GPU and analyzed in detail. Results are obtained up to 84 times faster than on a current central processing unit core. When we apply this method to high-frequency time series of the German BUND future, we find significant pattern-based correlations on short time scales. Furthermore, an anti-persistent behavior can be found on short time scales. Additionally, we compare the recent GPU generation, which provides a theoretical peak performance of up to roughly 1012 floating point operations per second with the previous one. .

  10. Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution.

    Science.gov (United States)

    Mukherjee, Krishanu; Bürglin, Thomas R

    2007-08-01

    TALE homeodomain proteins are an ancient subgroup within the group of homeodomain transcription factors that play important roles in animal, plant, and fungal development. We have extracted the full complement of TALE superclass homeobox genes from the genome projects of seven protostomes, seven deuterostomes, and Nematostella. This was supplemented with TALE homeobox genes from additional species and phylogenetic analyses were carried out with 276 sequences. We found 20 homeobox genes and 4 pseudogenes in humans, 21 genes in mouse, 8 genes in Drosophila, and 5 genes plus one truncated gene in Caenorhabditis elegans. Apart from the previously identified TALE classes MEIS, PBC, IRO, and TGIF, a novel class is identified, termed MOHAWK (MKX). Further, we show that the MEIS class can be divided into two families, PREP and MEIS. Prep genes have previously only been described in vertebrates but are lacking in Drosophila. Here we identify orthologues in other insect taxa as well as in the cnidarian Nematostella. In C. elegans, a divergent Prep protein has lost the homeodomain. Full-length multiple sequence alignment of the protostome and deuterostome sequences allowed us to identify several novel conserved motifs within the MKX, TGIF, and MEIS classes. Phylogenetic analyses revealed fast-evolving PBC class genes; in particular, some X-linked PBC genes in nematodes are subject to rapid evolution. In addition, several instances of gene loss were identified. In conclusion, our comprehensive analysis provides a defining framework for the classification of animal TALE homeobox genes and the understanding of their evolution.

  11. GPU加速的多边形叠加分析%Accelerating polygon overlay analysis by GPU

    Institute of Scientific and Technical Information of China (English)

    赵斯思; 周成虎

    2013-01-01

    叠加分析是地理信息系统最重要的分析功能之一,对多边形图层进行叠加分析要花费大量时间.为此,将GPU用于多边形叠加分析过程中的MBR过滤及多边形剪裁两个阶段.对MBR过滤阶段,提出了基于GPU的通过直方图及并行前置和实现的MBR过滤算法.对多边形剪裁阶段,通过改进Weiler-Atherton算法,使用新的焦点插入方法和简化的出入点标记算法,并结合并行前置和算法,提出了基于GPU的多边形剪裁算法.对实现过程中可能出现的负载不均衡情况,给出了基于动态规划的负载均衡方法.通过对这些算法的应用,实现对过滤阶段及精炼阶段的加速.实验结果表明,基于GPU的MBR过滤方法相对CPU实现的加速比为3.8,而基于GPU的多边形剪裁的速度比CPU实现快3.4倍.整体上,与CPU实现相比,GPU加速的多边形叠加提供了3倍以上的加速比.%Overlay analysis is one of the most important analysis capabilities of geographic information systems. Overlay analysis with polygon layers is a time-intensive process. To improve time efficiency, modern approaches of overlay analysis are generally divided into two stages, filtering and refinement (also known as polygon clipping). A great deal of effort has been taken to significantly reduce the number of candidates in the first stage (filtering) in order to alleviate the workload of the second stage (refinement). However, the second stage is still the most time-consuming part of the process. In this paper we applied GPGPU (General-purpose Graphics Processing Unit) computing to the two key stages of overlay analysis: MBR filtering (part of the filtering) and polygon clipping, and restricted the search area to polygon intersection analysis. We proposed GPU-based MBR filtering algorithm by combining histogram and parallel prefix-sum algorithms, and introduced GPU-based polygon clipping algorithm by improving Weiler-Atherton algorithm. There are two differences

  12. The potential of accelerating early detection of autism through content analysis of YouTube videos.

    Directory of Open Access Journals (Sweden)

    Vincent A Fusaro

    Full Text Available Autism is on the rise, with 1 in 88 children receiving a diagnosis in the United States, yet the process for diagnosis remains cumbersome and time consuming. Research has shown that home videos of children can help increase the accuracy of diagnosis. However the use of videos in the diagnostic process is uncommon. In the present study, we assessed the feasibility of applying a gold-standard diagnostic instrument to brief and unstructured home videos and tested whether video analysis can enable more rapid detection of the core features of autism outside of clinical environments. We collected 100 public videos from YouTube of children ages 1-15 with either a self-reported diagnosis of an ASD (N = 45 or not (N = 55. Four non-clinical raters independently scored all videos using one of the most widely adopted tools for behavioral diagnosis of autism, the Autism Diagnostic Observation Schedule-Generic (ADOS. The classification accuracy was 96.8%, with 94.1% sensitivity and 100% specificity, the inter-rater correlation for the behavioral domains on the ADOS was 0.88, and the diagnoses matched a trained clinician in all but 3 of 22 randomly selected video cases. Despite the diversity of videos and non-clinical raters, our results indicate that it is possible to achieve high classification accuracy, sensitivity, and specificity as well as clinically acceptable inter-rater reliability with nonclinical personnel. Our results also demonstrate the potential for video-based detection of autism in short, unstructured home videos and further suggests that at least a percentage of the effort associated with detection and monitoring of autism may be mobilized and moved outside of traditional clinical environments.

  13. Analysis and development of a lamp using light emitting diodes, in order to accelerate the process of photosynthesis in plants

    International Nuclear Information System (INIS)

    A prototype lamp has been created in order to promote accelerated development of the plant under artificial lighting. The lamp has been constructed using light-emitting diodes; its efficiency has been proven by comparing the performance with other existing commercial lamps. The study has considered mainly the emission spectrum analysis, power consumption, longevity and experimental development of each lamp. Tests are performed with different types of plantations in short periods, between one and two weeks of exposure to artificial lighting, compared to the development of a plantation illuminated with natural sunlight. The importance that meets the illumination and variation of the emitted wavelengths to a plant have been shown in the development and morphological change of the plant. None of the lamps used were able to approach the natural development that the plant should have, and although height growth has exceeded the reference plant has not obtained a proper plant growth. Researches and tests have been a basis for further studies on the changes experienced by plants exposed to artificial lighting. (author)

  14. Accelerated Aging of BKC 44306-10 Rigid Polyurethane Foam: FT-IR Spectroscopy, Dimensional Analysis, and Micro Computed Tomography

    Energy Technology Data Exchange (ETDEWEB)

    Gilbertson, Robert D. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Patterson, Brian M. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Smith, Zachary [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2014-01-02

    An accelerated aging study of BKC 44306-10 rigid polyurethane foam was carried out. Foam samples were aged in a nitrogen atmosphere at three different temperatures: 50 °C, 65 °C, and 80 °C. Foam samples were periodically removed from the aging canisters at 1, 3, 6, 9, 12, and 15 month intervals when FT-IR spectroscopy, dimensional analysis, and mechanical testing experiments were performed. Micro Computed Tomography imaging was also employed to study the morphology of the foams. Over the course of the aging study the foams the decreased in size by a magnitude of 0.001 inches per inch of foam. Micro CT showed the heterogeneous nature of the foam structure likely resulting from flow effects during the molding process. The effect of aging on the compression and tensile strength of the foam was minor and no cause for concern. FT-IR spectroscopy was used to follow the foam chemistry. However, it was difficult to draw definitive conclusions about the changes in chemical nature of the materials due to large variability throughout the samples.

  15. Zebrafish scales respond differently to in vitro dynamic and static acceleration: analysis of interaction between osteoblasts and osteoclasts.

    Science.gov (United States)

    Kitamura, Kei-ichiro; Takahira, Koh; Inari, Masato; Satoh, Yusuke; Hayakawa, Kazuichi; Tabuchi, Yoshiaki; Ogai, Kazuhiro; Nishiuchi, Takumi; Kondo, Takashi; Mikuni-Takagaki, Yuko; Chen, Wenxi; Hattori, Atsuhiko; Suzuki, Nobuo

    2013-09-01

    Zebrafish scales consist of bone-forming osteoblasts, bone-resorbing osteoclasts, and calcified bone matrix. To elucidate the underlying molecular mechanism of the effects induced by dynamic and static acceleration, we investigated the scale osteoblast- and osteoclast-specific marker gene expression involving osteoblast-osteoclast communication molecules. Osteoblasts express RANKL, which binds to the osteoclast surface receptor, RANK, and stimulates bone resorption. OPG, on the other hand, is secreted by osteoblast as a decoy receptor for RANKL, prevents RANKL from binding to RANK and thus prevents bone resorption. Therefore, the RANK-RANKL-OPG pathway contributes to the regulation of osteoclastogenesis by osteoblasts. Semaphorin 4D, in contrast, is expressed on osteoclasts, and binding to its receptor Plexin-B1 on osteoblasts results in suppression of bone formation. In the present study, we found that both dynamic and static acceleration at 3.0×g decreased RANKL/OPG ratio and increased osteoblast-specific functional mRNA such as alkaline phosphatase, while static acceleration increased and dynamic acceleration decreased osteoclast-specific mRNA such as cathepsin K. Static acceleration increased semaphorin 4D mRNA expression, while dynamic acceleration had no effect. The results of the present study indicated that osteoclasts have predominant control over bone metabolism via semaphorin 4D expression induced by static acceleration at 3.0×g.

  16. NRG1, ERBB4 and AKT1 Epistasis Increases Schizophrenia Risk and is Biologically Validated via Functional Neuroimaging in Healthy Controls

    Science.gov (United States)

    Nicodemus, Kristin K.; Law, Amanda J.; Radulescu, Eugenia; Luna, Augustin; Kolachana, Bhaskar; Vakkalanka, Radhakrishna; Rujescu, Dan; Giegling, Ina; Straub, Richard E.; McGee, Kate; Gold, Bert; Dean, Michael; Muglia, Pierandrea; Callicott, Joseph H.; Tan, Hao-Yang; Weinberger, Daniel R.

    2014-01-01

    CONTEXT NRG1 is a schizophrenia candidate gene and plays an important role in brain development and neural function. Schizophrenia is a complex disorder, with etiology likely due to epistasis. OBJECTIVE We sought to examine epistasis between NRG1 and selected NMDA-glutamate pathway partners implicated in its effects, including ERBB4, AKT1, DLG4, NOS1, NOS1AP. DESIGN Schizophrenia case-control sample analyzed using machine learning algorithms and logistic regression with follow-up using neuroimaging on an independent sample of healthy controls. PARTICIPANTS A referred sample of schizophrenic patients (N = 296) meeting DSM-IV criteria for schizophrenia-spectrum disorder and a volunteer sample of controls for case-control comparison (N = 365) and a separate volunteer sample of controls for neuroimaging (N = 172). MAIN OUTCOME MEASURES Epistatic association between SNPs and case-control status; epistatic association between SNPs and the BOLD physiological response during working memory measured by functional magnetic resonance imaging (fMRI). RESULTS We observed interaction between NRG1 5’ and 3’ SNPs: rs4560751-rs3802160 (likelihood ratio test (LRT) p=0.00020) and schizophrenia which was validated using fMRI of working memory in healthy controls; carriers of risk-associated genotypes showed inefficient processing in dorsolateral prefrontal cortex (DLPFC) (p=0.015, FWE corrected). We observed epistasis between NRG1 (rs10503929; Val1066Ile) and its receptor ERBB4 (rs1026882; LRT p=0.035); a three-way interaction with these two SNPs and AKT1 (rs2494734) was also observed (OR=27.13; 95% confidence interval 3.30, 223.03; LRT p=0.042). These same two- and three-way interactions were further biologically validated via fMRI: healthy individuals carrying risk genotypes for NRG1 and ERBB4, or these two together with AKT1, were disproportionately less efficient in DLPFC processing. Lower-level interactions were not observed between NRG1/ERBB4-AKT1 in association or

  17. Accelerator operations

    International Nuclear Information System (INIS)

    This section is concerned with the operation of both the tandem-linac system and the Dynamitron, two accelerators that are used for entirely different research. Developmental activities associated with the tandem and the Dynamitron are also treated here, but developmental activities associated with the superconducting linac are covered separately because this work is a program of technology development in its own right

  18. Analysis of recombination QTLs, segregation distortion, and epistasis for fitness in maize multiple populations using ultra-high-density markers

    Science.gov (United States)

    Understanding the maize genomic features would be useful for the study of genetic diversity and evolution and for maize breeding. Here, we used two maize nested association mapping (NAM) populations separately derived in China (CN-NAM) and the US (US-NAM) to explore the maize genomic features. The t...

  19. Photon activation analysis of the scraper in a 200-MeV electron accelerator using gamma-spectrometry depth profiling

    CERN Document Server

    Lijuan, He; Guobing, Yu; Guangyi, Ren; Zongjin, Duan

    2014-01-01

    For a high energy electron facility, the estimates of induced radioactivity in materials are of major importance to keep exposure to personnel and to the environment as low as reasonably achievable. In addition, an accurate prediction of induced radioactivity is also essential for the design, operation and decommissioning of a high energy electron linear accelerator. The research of induced radioactivity focuses on the photonuclear reaction, whose giant resonance response in the copper is ranging from 10 MeV to 28 MeV. The 200 MeV electron linac of NSRL is one of the earliest high-energy electron linear accelerators in P. R. China. The electrons are accelerated to 200 MeV by five acceleration tubes and collimated by the scrapers made of copper. At present, it is the first retired high-energy electron linear accelerator in domestic. Its decommissioning provides an efficient way for the induced radioactivity research of such accelerators, and is a matter of great significance to the accumulation of the induced ...

  20. Stationary plasma accelerator - ATON engine

    International Nuclear Information System (INIS)

    The principles of a stationary plasma accelerator (engine) with closed electron drift are described. The accelerator has record integral characteristics. A method for analysis of operating process features in the integral characteristics is proposed. Results are presented of local measurements of the plasma parameters in the accelerator channel and in the leaving plasma jet Main attention is paid to determination of the part of twice ionized ions in the plasma flow

  1. Fisher's geometric model of adaptation meets the functional synthesis: data on pairwise epistasis for fitness yields insights into the shape and size of phenotype space.

    Science.gov (United States)

    Weinreich, Daniel M; Knies, Jennifer L

    2013-10-01

    The functional synthesis uses experimental methods from molecular biology, biochemistry and structural biology to decompose evolutionarily important mutations into their more proximal mechanistic determinants. However these methods are technically challenging and expensive. Noting strong formal parallels between R.A. Fisher's geometric model of adaptation and a recent model for the phenotypic basis of protein evolution, we sought to use the former to make inferences into the latter using data on pairwise fitness epistasis between mutations. We present an analytic framework for classifying pairs of mutations with respect to similarity of underlying mechanism on this basis, and also show that these data can yield an estimate of the number of mutationally labile phenotypes underlying fitness effects. We use computer simulations to explore the robustness of our approach to violations of analytic assumptions and analyze several recently published datasets. This work provides a theoretical complement to the functional synthesis as well as a novel test of Fisher's geometric model.

  2. GPU-accelerated nonparametric kinetic analysis of DCE-MRI data from glioblastoma patients treated with bevacizumab.

    Science.gov (United States)

    Hsu, Yu-Han H; Ferl, Gregory Z; Ng, Chee M

    2013-05-01

    Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is often used to examine vascular function in malignant tumors and noninvasively monitor drug efficacy of antivascular therapies in clinical studies. However, complex numerical methods used to derive tumor physiological properties from DCE-MRI images can be time-consuming and computationally challenging. Recent advancement of computing technology in graphics processing unit (GPU) makes it possible to build an energy-efficient and high-power parallel computing platform for solving complex numerical problems. This study develops the first reported fast GPU-based method for nonparametric kinetic analysis of DCE-MRI data using clinical scans of glioblastoma patients treated with bevacizumab (Avastin®). In the method, contrast agent concentration-time profiles in arterial blood and tumor tissue are smoothed using a robust kernel-based regression algorithm in order to remove artifacts due to patient motion and then deconvolved to produce the impulse response function (IRF). The area under the curve (AUC) and mean residence time (MRT) of the IRF are calculated using statistical moment analysis, and two tumor physiological properties that relate to vascular permeability, volume transfer constant between blood plasma and extravascular extracellular space (K(trans)) and fractional interstitial volume (ve) are estimated using the approximations AUC/MRT and AUC. The most significant feature in this method is the use of GPU-computing to analyze data from more than 60,000 voxels in each DCE-MRI image in parallel fashion. All analysis steps have been automated in a single program script that requires only blood and tumor data as the sole input. The GPU-accelerated method produces K(trans) and ve estimates that are comparable to results from previous studies but reduces computational time by more than 80-fold compared to a previously reported central processing unit-based nonparametric method. Furthermore, it is at

  3. KEKB accelerator

    International Nuclear Information System (INIS)

    KEKB, the B-Factory at High Energy Accelerator Research Organization (KEK) recently achieved the luminosity of 1 x 1034 cm-2s-1. This luminosity is two orders higher than the world's level at 1990 when the design of KEKB started. This unprecedented result was made possible by KEKB's innovative design and technology in three aspects - beam focusing optics, high current storage, and beam - beam interaction. Now KEKB is leading the luminosity frontier of the colliders in the world. (author)

  4. Accelerating networks

    International Nuclear Information System (INIS)

    Evolving out-of-equilibrium networks have been under intense scrutiny recently. In many real-world settings the number of links added per new node is not constant but depends on the time at which the node is introduced in the system. This simple idea gives rise to the concept of accelerating networks, for which we review an existing definition and-after finding it somewhat constrictive-offer a new definition. The new definition provided here views network acceleration as a time dependent property of a given system as opposed to being a property of the specific algorithm applied to grow the network. The definition also covers both unweighted and weighted networks. As time-stamped network data becomes increasingly available, the proposed measures may be easily applied to such empirical datasets. As a simple case study we apply the concepts to study the evolution of three different instances of Wikipedia, namely, those in English, German, and Japanese, and find that the networks undergo different acceleration regimes in their evolution

  5. Accelerators and the Accelerator Community

    Energy Technology Data Exchange (ETDEWEB)

    Malamud, Ernest; Sessler, Andrew

    2008-06-01

    In this paper, standing back--looking from afar--and adopting a historical perspective, the field of accelerator science is examined. How it grew, what are the forces that made it what it is, where it is now, and what it is likely to be in the future are the subjects explored. Clearly, a great deal of personal opinion is invoked in this process.

  6. Performance Analysis of GPU-Accelerated Filter-Based Source Finding for HI Spectral Line Image Data

    CERN Document Server

    Westerlund, Stefan

    2015-01-01

    Searching for sources of electromagnetic emission in spectral-line radio astronomy interferometric data is a computationally intensive process. Parallel programming techniques and High Performance Computing hardware may be used to improve the computational performance of a source finding program. However, it is desirable to further reduce the processing time of source finding in order to decrease the computational resources required for the task. GPU acceleration is a method that may achieve significant increases in performance for some source finding algorithms, particularly for filtering image data. This work considers the application of GPU acceleration to the task of source finding and the techniques used to achieve the best performance, such as memory management. We also examine the changes in performance, where the algorithms that were GPU accelerated achieved a speedup of around 3.2 times the 12 core per node CPU-only performance, while the program as a whole experienced a speedup of 2.0 times.

  7. Electrostatic accelerators fundamentals and applications

    CERN Document Server

    2005-01-01

    Electrostatic accelerators are an important and widespread subgroup within the broad spectrum of modern, large particle acceleration devices. They are specifically designed for applications that require high-quality ion beams in terms of energy stability and emittance at comparatively low energies (a few MeV). Their ability to accelerate virtually any kind of ion over a continuously tunable range of energies make them a highly versatile tool for investigations in many research fields including, but not limited to, atomic and nuclear spectroscopy, heavy ion reactions, accelerator mass spectroscopy as well as ion-beam analysis and modification. The book is divided into three parts. The first part concisely introduces the field of accelerator technology and techniques that emphasize their major modern applications. The second part treats the electrostatic accelerator per se: its construction and operational principles as well as its maintenance. The third part covers all relevant applications in which electrosta...

  8. Using a commercial mathematics software package for on-line analysis at the BNL Accelerator Test Facility

    Energy Technology Data Exchange (ETDEWEB)

    Malone, R.; Wang, X.J.

    1999-06-14

    BY WRITING BOTH A CUSTOM WINDOWS(NTTM) DYNAMIC LINK LIBRARY AND GENERIC COMPANION SERVER SOFTWARE, THE INTRINSIC FUNCTIONS OF MATHSOFT MATHCAD(TM) HAVE BEEN EXTENDED WITH NEW CAPABILITIES WHICH PERMIT DIRECT ACCESS TO THE CONTROL SYSTEM DATABASES OF BROOKHAVEN NATIONAL LABORATORY ACCELERATOR TEST FACILITY. UNDER THIS SCHEME, A MATHCAD WORKSHEET EXECUTING ON A PERSONAL COMPUTER BECOMES A CLIENT WHICH CAN BOTH IMPORT AND EXPORT DATA TO A CONTROL SYSTEM SERVER VIA A NETWORK STREAM SOCKET CONNECTION. THE RESULT IS AN ALTERNATIVE, MATHEMATICALLY ORIENTED VIEW OF CONTROLLING THE ACCELERATOR INTERACTIVELY.

  9. accelerating cavity

    CERN Multimedia

    On the inside of the cavitytThere is a layer of niobium. Operating at 4.2 degrees above absolute zero, the niobium is superconducting and carries an accelerating field of 6 million volts per metre with negligible losses. Each cavity has a surface of 6 m2. The niobium layer is only 1.2 microns thick, ten times thinner than a hair. Such a large area had never been coated to such a high accuracy. A speck of dust could ruin the performance of the whole cavity so the work had to be done in an extremely clean environment.

  10. Analysis of accelerated degradation of a HT-PEM fuel cell caused by cell reversal in fuel starvation condition

    DEFF Research Database (Denmark)

    Zhou, Fan; Andreasen, Søren Juhl; Kær, Søren Knudsen;

    2015-01-01

    This paper reports an accelerated degradation test of a high temperature PEM fuel cell under repeated H2 starvation condition. The H2 stoichiometry is cycled between 3.0 and 0.8 every 2 min during the test. The experimental results show that the polarity of the fuel cell is reversed under H2...

  11. Fundamental principles, measurement techniques and data analysis in a ion accelerator; Principios fundamentales, tecnicas de medicion y analisis de datos en un acelerador de iones

    Energy Technology Data Exchange (ETDEWEB)

    Gonzalez M, O. [Facultad de Ciencias, UNAM, Ciudad Universitaria, 04510 Mexico D. F. (Mexico); Gleason, C. [Facultad de Ciencias, Universidad Autonoma del Estado de Morelos, Cuernavaca, Morelos (Mexico); Hinojosa, G. [Instituto de Ciencias Fisicas, UNAM, Ciudad Universitaria, 04510 Mexico D. F. (Mexico)]. e-mail: hinojosa@fis.unam.mx

    2008-07-01

    The present work is intended to be a general reference for students and professionals interested in the field. Here, we present an introduction to the analysis techniques and fundamental principles for data processing and operation of a typical ion accelerator that operates in the low energy range. We also present a detailed description of the apparatus and propose new analysis methods for the results. In addition, we introduce illustrative simulations of the ion's trajectories in the different components of the apparatus performed with specialized software and, a new computer data acquisition and control interface. (Author)

  12. Simulation and characterization of the RF system and global stability analysis at the REGAE linear electron accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Mayet, Frank

    2012-12-15

    LAOLA (LAboratory for Laser- and beam-driven plasma Acceleration), is a collaboration between groups from DESY and the University of Hamburg. Its mission is to complement basic research in the relatively new field of plasma wakefield acceleration (PWA) by an explicit combination with DESY's conventional, modern accelerators. The linear electron accelerator REGAE is designed to produce sub 10 fs low charge electron bunches with ultra-low emittance at a repetition rate of 50 Hz. The planned experiments include femtosecond electron diffraction (R.J. Dwayne Miller), as well as the probing of laser induced plasma wakefields with well characterized bunches (LAOLA). They all require high bunch time of flight stability down to 10 fs. The REGAE machine consists of two RF cavities, both fed by a single klystron. While the first one - the gun cavity - is used for acceleration of the electrons, the second one - the buncher cavity - can be used to reduce the electron bunch length. This scheme only works for a specific RF phase relation between the two cavities. This thesis is split into two parts. In the first one the implications of the unique two cavity design on day-to-day machine operation are analyzed. To this end an analytical model of the RF system is developed, which is necessary for understanding how to individually adjust the cavity phases. In the second part the influence of the setup on time of flight stability is discussed with an emphasis on phase jitter compensation. RF phase stability measurements reveal that the current machine setup allows for a time of flight stability down to 50 fs right after the gun.

  13. Analysis of the power system from an electron beam accelerator and the correlation with the theoretical dosimetry for radiation processing

    Energy Technology Data Exchange (ETDEWEB)

    Somessari, Samir Luiz; Somessari, Elizabeth S. Ribeiro; Silveira, Carlos Gaia da; Calvo, Wilson Aparecido Parejo, E-mail: somessar@ipen.br, E-mail: esomessa@ipen.br, E-mail: cgsilvei@ipen.br, E-mail: wapcalvo@ipen.br [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil)

    2013-07-01

    Dynamitron DC1500/25/04 type electron beam accelerator (EBA), model JOB 188, was manufactured by IBA Industrial (Radiation Dynamics, Inc.) and installed at IPEN/CNEN-SP in 1978. The technical specifications of the EBA are: energy 0.5 to 1.5 MeV; beam current: 0.3 to 25.0 mA; beam scanning: 60 to 120 cm; beam width: 25.4 mm and frequency: 100 Hz. Nowadays, this accelerator has been used for innumerable applications, such as: for sterilization of medical, pharmaceutical and biological products; treatment of industrial and domestic effluents and sludge; preservation and disinfestation of foods and agricultural products; lignocellulosic material irradiation as a pre-treatment to produce ethanol bio-fuel; decontamination of pesticide packing; solid residues remediation; organic compounds removal from wastewater; treatment of effluent from petroleum production units; crosslinking of foams, wires and electric cables; composite and nanocomposite materials and carbon fibers irradiation; irradiated grafting ion-exchange membranes for fuel cells application; natural polymers and multilayer packages irradiation, and biodegradable blends production. The energy of the electron beam is calculated as a function of the current in the accelerator high-voltage divisor, taking into account the thickness and density of the material to be irradiated. This energy is calculated considering the electron through the entire material and the distance from the titanium foil window, so that the absorbed doses at the point of entrance and exit are equivalent on the material. The dose is directly proportional to the beam current and the exposure time of the material under the electron beam and inversely proportional to the scan width. The aim of this paper is to analyze the power system parameters of the EBA Dynamitron DC1500/25/04 accelerator, such as, voltage and root-mean-square (RMS) current in the oscillator system, high voltage generator and waveform, using software developed in the

  14. Damage Based Analysis (DBA): Theory, Derivation and Practical Application - Using Both an Acceleration and Pseudo-Velocity Approach

    Science.gov (United States)

    Grillo, Vince

    2016-01-01

    The objective of this presentation is to give a brief overview of the theory behind the (DBA) method, an overview of the derivation and a practical application of the theory using the Python computer language. The Theory and Derivation will use both Acceleration and Pseudo Velocity methods to derive a series of equations for processing by Python. We will take the results and compare both Acceleration and Pseudo Velocity methods and discuss implementation of the Python functions. Also, we will discuss the efficiency of the methods and the amount of computer time required for the solution. In conclusion, (DBA) offers a powerful method to evaluate the amount of energy imparted into a system in the form of both Amplitude and Duration during qualification testing and flight environments. Many forms of steady state and transient vibratory motion can be characterized using this technique. (DBA) provides a more robust alternative to traditional methods such Power Spectral Density (PSD) using a Maximax approach.

  15. Menopause accelerates biological aging.

    Science.gov (United States)

    Levine, Morgan E; Lu, Ake T; Chen, Brian H; Hernandez, Dena G; Singleton, Andrew B; Ferrucci, Luigi; Bandinelli, Stefania; Salfati, Elias; Manson, JoAnn E; Quach, Austin; Kusters, Cynthia D J; Kuh, Diana; Wong, Andrew; Teschendorff, Andrew E; Widschwendter, Martin; Ritz, Beate R; Absher, Devin; Assimes, Themistocles L; Horvath, Steve

    2016-08-16

    Although epigenetic processes have been linked to aging and disease in other systems, it is not yet known whether they relate to reproductive aging. Recently, we developed a highly accurate epigenetic biomarker of age (known as the "epigenetic clock"), which is based on DNA methylation levels. Here we carry out an epigenetic clock analysis of blood, saliva, and buccal epithelium using data from four large studies: the Women's Health Initiative (n = 1,864); Invecchiare nel Chianti (n = 200); Parkinson's disease, Environment, and Genes (n = 256); and the United Kingdom Medical Research Council National Survey of Health and Development (n = 790). We find that increased epigenetic age acceleration in blood is significantly associated with earlier menopause (P = 0.00091), bilateral oophorectomy (P = 0.0018), and a longer time since menopause (P = 0.017). Conversely, epigenetic age acceleration in buccal epithelium and saliva do not relate to age at menopause; however, a higher epigenetic age in saliva is exhibited in women who undergo bilateral oophorectomy (P = 0.0079), while a lower epigenetic age in buccal epithelium was found for women who underwent menopausal hormone therapy (P = 0.00078). Using genetic data, we find evidence of coheritability between age at menopause and epigenetic age acceleration in blood. Using Mendelian randomization analysis, we find that two SNPs that are highly associated with age at menopause exhibit a significant association with epigenetic age acceleration. Overall, our Mendelian randomization approach and other lines of evidence suggest that menopause accelerates epigenetic aging of blood, but mechanistic studies will be needed to dissect cause-and-effect relationships further. PMID:27457926

  16. Inertia coupling analysis of a self-decoupled wheel force transducer under multi-axis acceleration fields.

    Directory of Open Access Journals (Sweden)

    Lihang Feng

    Full Text Available Wheel force transducer (WFT, which measures the three-axis forces and three-axis torques applied to the wheel, is an important instrument in the vehicle testing field and has been extremely promoted by researchers with great interests. The transducer, however, is typically mounted on the wheel of a moving vehicle, especially on a high speed car, when abruptly accelerating or braking, the mass/inertia of the transducer/wheel itself will have an extra effect on the sensor response so that the inertia/mass loads will also be detected and coupled into the signal outputs. The effect which is considered to be inertia coupling problem will decrease the sensor accuracy. In this paper, the inertia coupling of a universal WFT under multi-axis accelerations is investigated. According to the self-decoupling approach of the WFT, inertia load distribution is solved based on the principle of equivalent mass and rotary inertia, thus then inertia impact can be identified with the theoretical derivation. The verification is achieved by FEM simulation and experimental tests. Results show that strains in simulation agree well with the theoretical derivation. The relationship between the applied acceleration and inertia load for both wheel force and moment is the approximate linear, respectively. All the relative errors are less than 5% which are within acceptable and the inertia loads have the maximum impact on the signal output about 1.5% in the measurement range.

  17. Inertia coupling analysis of a self-decoupled wheel force transducer under multi-axis acceleration fields.

    Science.gov (United States)

    Feng, Lihang; Lin, Guoyu; Zhang, Weigong; Dai, Dong

    2015-01-01

    Wheel force transducer (WFT), which measures the three-axis forces and three-axis torques applied to the wheel, is an important instrument in the vehicle testing field and has been extremely promoted by researchers with great interests. The transducer, however, is typically mounted on the wheel of a moving vehicle, especially on a high speed car, when abruptly accelerating or braking, the mass/inertia of the transducer/wheel itself will have an extra effect on the sensor response so that the inertia/mass loads will also be detected and coupled into the signal outputs. The effect which is considered to be inertia coupling problem will decrease the sensor accuracy. In this paper, the inertia coupling of a universal WFT under multi-axis accelerations is investigated. According to the self-decoupling approach of the WFT, inertia load distribution is solved based on the principle of equivalent mass and rotary inertia, thus then inertia impact can be identified with the theoretical derivation. The verification is achieved by FEM simulation and experimental tests. Results show that strains in simulation agree well with the theoretical derivation. The relationship between the applied acceleration and inertia load for both wheel force and moment is the approximate linear, respectively. All the relative errors are less than 5% which are within acceptable and the inertia loads have the maximum impact on the signal output about 1.5% in the measurement range.

  18. In vitro analysis of different properties of acrylic resins for ocular prosthesis submitted to accelerated aging with or without photopolymerized glaze.

    Science.gov (United States)

    Santos, Daniela Micheline Dos; Nagay, Bruna Egumi; da Silva, Emily Vivianne Freitas; Bonatto, Liliane da Rocha; Sonego, Mariana Vilela; Moreno, Amália; Rangel, Elidiane Cipriano; da Cruz, Nilson Cristino; Goiato, Marcelo Coelho

    2016-12-01

    The effect of a photopolymerized glaze on different properties of acrylic resin (AR) for ocular prostheses submitted to accelerated aging was investigated. Forty discs were divided into 4 groups: N1 AR without glaze (G1); colorless AR without glaze (G2); N1 AR with glaze (G3); and colorless AR with glaze (G4). All samples were polished with sandpaper (240, 600 and 800-grit). In G1 and G2, a 1200-grit sandpaper was also used. In G3 and G4, samples were coated with MegaSeal glaze. Property analysis of color stability, microhardness, roughness, and surface energy, and assays of atomic force microscopy, scanning electron microscopy, and energy-dispersive spectroscopy were performed before and after the accelerated aging (1008h). Data were submitted to the ANOVA and Tukey Test (p<0.05). Groups with glaze exhibited statistically higher color change and roughness after aging. The surface microhardness significantly decreased in groups with glaze and increased in groups without glaze. The surface energy increased after the aging, independent of the polishing procedure. All groups showed an increase of surface irregularities. Photopolymerized glaze is an inadequate surface treatment for AR for ocular prostheses and it affected the color stability, roughness, and microhardness. The accelerated aging interfered negatively with the properties of resins. PMID:27612795

  19. Analysis of quality control data of eight modern radiotherapy linear accelerators: the short- and long-term behaviours of the outputs and the reproducibility of quality control measurements

    Energy Technology Data Exchange (ETDEWEB)

    Kapanen, Mika [Radiation and Nuclear Safety Authority (STUK), Laippatie 4, 00881 Helsinki (Finland); Tenhunen, Mikko [Department of Oncology, Helsinki University Central Hospital, Haartmaninkatu 4, 00029 Helsinki (Finland); Haemaelaeinen, Tuomo [Department of Oncology, Helsinki University Central Hospital, Haartmaninkatu 4, 00029 Helsinki (Finland); Sipilae, Petri [Radiation and Nuclear Safety Authority (STUK), Laippatie 4, 00881 Helsinki (Finland); Parkkinen, Ritva [Radiation and Nuclear Safety Authority (STUK), Laippatie 4, 00881 Helsinki (Finland); Jaervinen, Hannu [Radiation and Nuclear Safety Authority (STUK), Laippatie 4, 00881 Helsinki (Finland)

    2006-07-21

    Quality control (QC) data of radiotherapy linear accelerators, collected by Helsinki University Central Hospital between the years 2000 and 2004, were analysed. The goal was to provide information for the evaluation and elaboration of QC of accelerator outputs and to propose a method for QC data analysis. Short- and long-term drifts in outputs were quantified by fitting empirical mathematical models to the QC measurements. Normally, long-term drifts were well ({<=}1%) modelled by either a straight line or a single-exponential function. A drift of 2% occurred in 18 {+-} 12 months. The shortest drift times of only 2-3 months were observed for some new accelerators just after the commissioning but they stabilized during the first 2-3 years. The short-term reproducibility and the long-term stability of local constancy checks, carried out with a sealed plane parallel ion chamber, were also estimated by fitting empirical models to the QC measurements. The reproducibility was 0.2-0.5% depending on the positioning practice of a device. Long-term instabilities of about 0.3%/month were observed for some checking devices. The reproducibility of local absorbed dose measurements was estimated to be about 0.5%. The proposed empirical model fitting of QC data facilitates the recognition of erroneous QC measurements and abnormal output behaviour, caused by malfunctions, offering a tool to improve dose control.

  20. Analysis of quality control data of eight modern radiotherapy linear accelerators: the short- and long-term behaviours of the outputs and the reproducibility of quality control measurements

    International Nuclear Information System (INIS)

    Quality control (QC) data of radiotherapy linear accelerators, collected by Helsinki University Central Hospital between the years 2000 and 2004, were analysed. The goal was to provide information for the evaluation and elaboration of QC of accelerator outputs and to propose a method for QC data analysis. Short- and long-term drifts in outputs were quantified by fitting empirical mathematical models to the QC measurements. Normally, long-term drifts were well (≤1%) modelled by either a straight line or a single-exponential function. A drift of 2% occurred in 18 ± 12 months. The shortest drift times of only 2-3 months were observed for some new accelerators just after the commissioning but they stabilized during the first 2-3 years. The short-term reproducibility and the long-term stability of local constancy checks, carried out with a sealed plane parallel ion chamber, were also estimated by fitting empirical models to the QC measurements. The reproducibility was 0.2-0.5% depending on the positioning practice of a device. Long-term instabilities of about 0.3%/month were observed for some checking devices. The reproducibility of local absorbed dose measurements was estimated to be about 0.5%. The proposed empirical model fitting of QC data facilitates the recognition of erroneous QC measurements and abnormal output behaviour, caused by malfunctions, offering a tool to improve dose control

  1. Time-motion analysis of acceleration demands of 4v4 small-sided soccer games played on different pitch sizes.

    Science.gov (United States)

    Hodgson, Craig; Akenhead, Richard; Thomas, Kevin

    2014-02-01

    We aimed to quantify the time-motion characteristics and technical demands of small-sided soccer games (SSGs) played on small, medium and large pitches using a high frequency non-differential global positioning system (NdGPS) that allowed assessment of acceleration and deceleration patterns. Eight male soccer players competed in SSGs comprising 4×4min quarters (3min recovery) on small (30×20m) medium (40×30m) and large (50×40m) pitch sizes. Time motion analysis using a NdGPS positioning system quantified distance covered sprinting (⩾6.7ms(-1)), high speed running (⩾5.8ms(-1)) and low (1-2ms(-2)), medium (2-3ms(-2)) and high (>3ms(-2)) acceleration. The frequency of common technical actions (passing, turning, dribbling, shooting, tackling, heading and interceptions) was performed using a hand notation system. SSGs played on medium and large pitches had a greater physical demand than on small pitches, with significantly more distance covered in all movement categories. Total distance covered in acceleration categories ranged from 230±111 (small pitch) to 356±72m (medium pitch). The small pitch imposed a greater technical demand on players (more passes, shots and tackles) compared to medium and large pitches. The study provides novel data demonstrating the acceleration patterns observed in SSGs are relatively greater than those observed during professional match play. Thus SSGs might offer a "density" type conditioning stimulus. Practitioners should be aware that changes in pitch size impact both the physical and technical demands of SSGs. PMID:24576705

  2. Equilibrium and linear stability analysis of a class of solutions of a thin ring model for a stationary field electron ring accelerator

    International Nuclear Information System (INIS)

    A class of equilibrium solutions is developed for a thin-ring model of a stationary field electron ring accelerator during the slow-moving electron ring stage. The problem is viewed as a generalized version of the Bernstein-Greene-Kruskal problem, leading to the solution of electron and ion charge densities. Linear stability analysis shows that this class of equilibrium solutions is linearly stable under J = 0 perturbations of all values of the ratio of the speed of the most energetic ions to the speed of the most energetic electrons. The values of the oscillation frequencies and the expressions for their corresponding eigenfunctions are found to exhibit convergence

  3. Software for virtual accelerator designing

    International Nuclear Information System (INIS)

    The article discusses appropriate technologies for software implementation of the Virtual Accelerator. The Virtual Accelerator is considered as a set of services and tools enabling transparent execution of computational software for modeling beam dynamics in accelerators on distributed computing resources. Distributed storage and information processing facilities utilized by the Virtual Accelerator make use of the Service-Oriented Architecture (SOA) according to a cloud computing paradigm. Control system tool-kits (such as EPICS, TANGO), computing modules (including high-performance computing), realization of the GUI with existing frameworks and visualization of the data are discussed in the paper. The presented research consists of software analysis for realization of interaction between all levels of the Virtual Accelerator and some samples of middle-ware implementation. A set of the servers and clusters at St.-Petersburg State University form the infrastructure of the computing environment for Virtual Accelerator design. Usage of component-oriented technology for realization of Virtual Accelerator levels interaction is proposed. The article concludes with an overview and substantiation of a choice of technologies that will be used for design and implementation of the Virtual Accelerator. (authors)

  4. New proposal for non-linear ghost-free massive F(R) gravity: Cosmic acceleration and Hamiltonian analysis

    Energy Technology Data Exchange (ETDEWEB)

    Klusoň, Josef [Department of Theoretical Physics and Astrophysics, Faculty of Science, Masaryk University, Kotlářská 2, 611 37, Brno (Czech Republic); Nojiri, Shin' ichi [Department of Physics, Nagoya University, Nagoya 464-8602 (Japan); Kobayashi-Maskawa Institute for the Origin of Particles and the Universe, Nagoya University, Nagoya 464-8602 (Japan); Odintsov, Sergei D. [Instituciò Catalana de Recerca i Estudis Avançats (ICREA), Barcelona (Spain); Institut de Ciencies de l' Espai (IEEC-CSIC), Campus UAB, Torre C5-Par-2a pl, E-08193 Bellaterra (Barcelona) (Spain); Tomsk State Pedagogical University, Tomsk (Russian Federation)

    2013-11-04

    We propose new version of massive F(R) gravity which is natural generalization of convenient massive ghost-free gravity. Its Hamiltonian formulation in scalar-tensor frame is developed. We show that such F(R) theory is ghost-free. The cosmological evolution of such theory is investigated. Despite the strong Bianchi identity constraint the possibility of cosmic acceleration (especially, in the presence of cold dark matter) is established. Ghost-free massive F(R,T) gravity is also proposed.

  5. Speciation analysis of 129I in seawater by carrier-free AgI-AgCl coprecipitation and accelerator mass spectrometric measurement

    DEFF Research Database (Denmark)

    Luo, Maoyi; Hou, Xiaolin; He, Chaohui;

    2013-01-01

    A rapid and simple method was developed for speciation analysis of 129I in seawater by selective coprecipitation of carrier-free iodide and accelerator mass spectrometry (AMS) measurement of 129I. Iodide was separated from seawater and other species of iodine by coprecipitation of AgI with Ag2SO3...... is higher than 70%. Six seawater samples collected from the Norwegian Sea were analyzed by this method as well as a conventional anion-exchange chromatographic method; the results from the two methods show no significant difference (p = 0.05). Because only one separation step and fewer chemicals...... are involved in the procedure, this method is suitable for operation on board sampling vessels, as it avoids the transport of samples to the laboratory and storage for a longer time before analysis, therefore significantly improving the analytical capacity and reliability of speciation analysis of 129I...

  6. Genetic analysis for fruit yield and yield attributes in okra (Abelmoschus esculentus L. Moench

    Directory of Open Access Journals (Sweden)

    P. K. Akotkar and D. K. De

    2014-12-01

    Full Text Available The components of gene effects for yield and its components in okra were studied using generation mean analysis from six generations (P1, P2, F1, F2, BC1, and BC2 derived from six different genotypes. Joint scaling test was applied to detect the presence of epistasis. Epistasis was detected in both the cases. Prevalence of duplicate type of epistasis was observed in all the cases except number of fruits/ plant, fruit length in C1 (IC 3307 x IC 433645, fruit diameter, inter node length in C2 (IC- 43736 x Parbhani Kranti, fruit length, fruit diameter and fruit weight in C3 (IC-342075 X IC-332453. Additive, dominance and epistatic gene effects contribute significantly to the inheritance of various yield characters studied. The joint scaling test confirmed the inadequacy of the additive dominance model in most of the crosses for majority of the characters and indicated the presence of epistasis. Low narrow sense heritability values for most of the characters indicating that these characters are more influenced by the environment and they cannot be improved by simple selection.

  7. Preliminary analysis of acceleration of sea level rise through the twentieth century using extended tide gauge data sets (August 2014)

    Science.gov (United States)

    Hogarth, Peter

    2014-11-01

    This work explores the potential for extending tide gauge time series from the Permanent Service for Mean Sea Level (PSMSL) using historical documents, PSMSL ancillary data, and by developing additional composite time series using near neighbor tide gauges. The aim was to increase the number, completeness, and geographical extent of records covering most or all of the twentieth century. The number of at least 75% complete century-scale time series have been approximately doubled over the original PSMSL data set. In total, over 4800 station years have been added, with 294 of these added to 10 long Southern Hemisphere records. Individual century-scale acceleration values derived from this new extended data set tend to converge on a value of 0.01 ± 0.008 mm/yr2. This result agrees closely with recent work and is statistically significant at the 1 sigma level. Possible causes of acceleration and errors are briefly discussed. Results confirm the importance of current data archeology projects involving digitization of the remaining archives of hard copy tide gauge data for sea level and climate studies.

  8. Stochastic Analysis and Forecasts of the Patterns of Speed, Acceleration, and Levels of Material Stock Accumulation in Society.

    Science.gov (United States)

    Fishman, Tomer; Schandl, Heinz; Tanikawa, Hiroki

    2016-04-01

    The recent acceleration of urbanization and industrialization of many parts of the developing world, most notably in Asia, has resulted in a fast-increasing demand for and accumulation of construction materials in society. Despite the importance of physical stocks in society, the empirical assessment of total material stock of buildings and infrastructure and reasons for its growth have been underexplored in the sustainability literature. We propose an innovative approach for explaining material stock dynamics in society and create a country typology for stock accumulation trajectories using the ARIMA (Autoregressive Integrated Moving Average) methodology, a stochastic approach commonly used in business studies and economics to inspect and forecast time series. This enables us to create scenarios for future demand and accumulation of building materials in society, including uncertainty estimates. We find that the so-far overlooked aspect of acceleration trends of material stock accumulation holds the key to explaining material stock growth, and that despite tremendous variability in country characteristics, stock accumulation is limited to only four archetypal growth patterns. The ability of nations to change their pattern will be a determining factor for global sustainability.

  9. Accelerated Parallel Texture Optimization

    Institute of Scientific and Technical Information of China (English)

    Hao-Da Huang; Xin Tong; Wen-Cheng Wang

    2007-01-01

    Texture optimization is a texture synthesis method that can efficiently reproduce various features of exemplar textures. However, its slow synthesis speed limits its usage in many interactive or real time applications. In this paper, we propose a parallel texture optimization algorithm to run on GPUs. In our algorithm, k-coherence search and principle component analysis (PCA) are used for hardware acceleration, and two acceleration techniques are further developed to speed up our GPU-based texture optimization. With a reasonable precomputation cost, the online synthesis speed of our algorithm is 4000+ times faster than that of the original texture optimization algorithm and thus our algorithm is capable of interactive applications. The advantages of the new scheme are demonstrated by applying it to interactive editing of flow-guided synthesis.

  10. Linear Accelerator (LINAC)

    Science.gov (United States)

    ... News Physician Resources Professions Site Index A-Z Linear Accelerator A linear accelerator (LINAC) customizes high energy x-rays to ... ensured? What is this equipment used for? A linear accelerator (LINAC) is the device most commonly used ...

  11. The Real-Time Data Analysis and Decision System for Particle Flux Detection in the LHC Accelerator at CERN.

    CERN Document Server

    Zamantzas, C; Dehning, B

    2006-01-01

    The superconducting Large Hadron Collider (LHC) under construction at the European Organisation for Nuclear Research (CERN) is an accelerator unprecedented in terms of beam energy, particle production rate and also in the potential of self-destruction. Its operation requires a large variety of instrumentation, not only for the control of the beams, but also for the protection of the complex hardware systems. The Beam Loss Monitoring (BLM) system has to prevent the superconducting magnets from becoming normal conducting and protect the machine components against damages making it one of the most critical elements for the protection of the LHC. For its operation, the system requires 3600 detectors to be placed at various locations around the 27 km ring. The measurement system is sub-divided to the tunnel electronics, which are responsible for acquiring, digitising and transmitting the data, and the surface electronics, which receive the data via 2 km optical data links, process, analyze, store and issue warning...

  12. Combined analysis of νμ disappearance and νμ→νe appearance in MINOS using accelerator and atmospheric neutrinos.

    Science.gov (United States)

    Adamson, P; Anghel, I; Aurisano, A; Barr, G; Bishai, M; Blake, A; Bock, G J; Bogert, D; Cao, S V; Castromonte, C M; Cherdack, D; Childress, S; Coelho, J A B; Corwin, L; Cronin-Hennessy, D; de Jong, J K; Devan, A V; Devenish, N E; Diwan, M V; Escobar, C O; Evans, J J; Falk, E; Feldman, G J; Frohne, M V; Gallagher, H R; Gomes, R A; Goodman, M C; Gouffon, P; Graf, N; Gran, R; Grzelak, K; Habig, A; Hahn, S R; Hartnell, J; Hatcher, R; Himmel, A; Holin, A; Huang, J; Hylen, J; Irwin, G M; Isvan, Z; James, C; Jensen, D; Kafka, T; Kasahara, S M S; Koizumi, G; Kordosky, M; Kreymer, A; Lang, K; Ling, J; Litchfield, P J; Lucas, P; Mann, W A; Marshak, M L; Mayer, N; McGivern, C; Medeiros, M M; Mehdiyev, R; Meier, J R; Messier, M D; Michael, D G; Miller, W H; Mishra, S R; Moed Sher, S; Moore, C D; Mualem, L; Musser, J; Naples, D; Nelson, J K; Newman, H B; Nichol, R J; Nowak, J A; O'Connor, J; Orchanian, M; Pahlka, R B; Paley, J; Patterson, R B; Pawloski, G; Perch, A; Phan-Budd, S; Plunkett, R K; Poonthottathil, N; Qiu, X; Radovic, A; Rebel, B; Rosenfeld, C; Rubin, H A; Sanchez, M C; Schneps, J; Schreckenberger, A; Schreiner, P; Sharma, R; Sousa, A; Tagg, N; Talaga, R L; Thomas, J; Thomson, M A; Tian, X; Timmons, A; Tognini, S C; Toner, R; Torretta, D; Tzanakos, G; Urheim, J; Vahle, P; Viren, B; Weber, A; Webb, R C; White, C; Whitehead, L; Whitehead, L H; Wojcicki, S G; Zwaska, R

    2014-05-16

    We report on a new analysis of neutrino oscillations in MINOS using the complete set of accelerator and atmospheric data. The analysis combines the ν(μ) disappearance and ν(e) appearance data using the three-flavor formalism. We measure |Δm(32)(2)| = [2.28-2.46] × 10(-3) eV(2) (68% C.L.) and sin(2)θ(23) = 0.35-0.65 (90% C.L.) in the normal hierarchy, and |Δm(32)(2)| = [2.32-2.53] × 10(-3) eV(2) (68% C.L.) and sin(2)θ(23) = 0.34-0.67 (90% C.L.) in the inverted hierarchy. The data also constrain δ(CP), the θ(23} octant degeneracy and the mass hierarchy; we disfavor 36% (11%) of this three-parameter space at 68% (90%) C.L. PMID:24877929

  13. Combined analysis of νμ disappearance and νμ→νe appearance in MINOS using accelerator and atmospheric neutrinos.

    Science.gov (United States)

    Adamson, P; Anghel, I; Aurisano, A; Barr, G; Bishai, M; Blake, A; Bock, G J; Bogert, D; Cao, S V; Castromonte, C M; Cherdack, D; Childress, S; Coelho, J A B; Corwin, L; Cronin-Hennessy, D; de Jong, J K; Devan, A V; Devenish, N E; Diwan, M V; Escobar, C O; Evans, J J; Falk, E; Feldman, G J; Frohne, M V; Gallagher, H R; Gomes, R A; Goodman, M C; Gouffon, P; Graf, N; Gran, R; Grzelak, K; Habig, A; Hahn, S R; Hartnell, J; Hatcher, R; Himmel, A; Holin, A; Huang, J; Hylen, J; Irwin, G M; Isvan, Z; James, C; Jensen, D; Kafka, T; Kasahara, S M S; Koizumi, G; Kordosky, M; Kreymer, A; Lang, K; Ling, J; Litchfield, P J; Lucas, P; Mann, W A; Marshak, M L; Mayer, N; McGivern, C; Medeiros, M M; Mehdiyev, R; Meier, J R; Messier, M D; Michael, D G; Miller, W H; Mishra, S R; Moed Sher, S; Moore, C D; Mualem, L; Musser, J; Naples, D; Nelson, J K; Newman, H B; Nichol, R J; Nowak, J A; O'Connor, J; Orchanian, M; Pahlka, R B; Paley, J; Patterson, R B; Pawloski, G; Perch, A; Phan-Budd, S; Plunkett, R K; Poonthottathil, N; Qiu, X; Radovic, A; Rebel, B; Rosenfeld, C; Rubin, H A; Sanchez, M C; Schneps, J; Schreckenberger, A; Schreiner, P; Sharma, R; Sousa, A; Tagg, N; Talaga, R L; Thomas, J; Thomson, M A; Tian, X; Timmons, A; Tognini, S C; Toner, R; Torretta, D; Tzanakos, G; Urheim, J; Vahle, P; Viren, B; Weber, A; Webb, R C; White, C; Whitehead, L; Whitehead, L H; Wojcicki, S G; Zwaska, R

    2014-05-16

    We report on a new analysis of neutrino oscillations in MINOS using the complete set of accelerator and atmospheric data. The analysis combines the ν(μ) disappearance and ν(e) appearance data using the three-flavor formalism. We measure |Δm(32)(2)| = [2.28-2.46] × 10(-3) eV(2) (68% C.L.) and sin(2)θ(23) = 0.35-0.65 (90% C.L.) in the normal hierarchy, and |Δm(32)(2)| = [2.32-2.53] × 10(-3) eV(2) (68% C.L.) and sin(2)θ(23) = 0.34-0.67 (90% C.L.) in the inverted hierarchy. The data also constrain δ(CP), the θ(23} octant degeneracy and the mass hierarchy; we disfavor 36% (11%) of this three-parameter space at 68% (90%) C.L.

  14. Development and application of compact and on-chip electron linear accelerators for dynamic tracking cancer therapy and DNA damage/repair analysis

    Science.gov (United States)

    Uesaka, M.; Demachi, K.; Fujiwara, T.; Dobashi, K.; Fujisawa, H.; Chhatkuli, R. B.; Tsuda, A.; Tanaka, S.; Matsumura, Y.; Otsuki, S.; Kusano, J.; Yamamoto, M.; Nakamura, N.; Tanabe, E.; Koyama, K.; Yoshida, M.; Fujimori, R.; Yasui, A.

    2015-06-01

    We are developing compact electron linear accelerators (hereafter linac) with high RF (Radio Frequency) frequency (9.3 GHz, wavelength 32.3 mm) of X-band and applying to medicine and non-destructive testing. Especially, potable 950 keV and 3.95 MeV linac X-ray sources have been developed for on-site transmission testing at several industrial plants and civil infrastructures including bridges. 6 MeV linac have been made for pinpoint X-ray dynamic tracking cancer therapy. The length of the accelerating tube is ∼600 mm. The electron beam size at the X-ray target is less than 1 mm and X-ray spot size at the cancer is less than 3 mm. Several hardware and software are under construction for dynamic tracking therapy for moving lung cancer. Moreover, as an ultimate compact linac, we are designing and manufacturing a laser dielectric linac of ∼1 MeV with Yr fiber laser (283 THz, wavelength 1.06 pm). Since the wavelength is 1.06 μm, the length of one accelerating strcture is tens pm and the electron beam size is in sub-micro meter. Since the sizes of cell and nuclear are about 10 and 1 μm, respectively, we plan to use this “On-chip” linac for radiation-induced DNA damage/repair analysis. We are thinking a system where DNA in a nucleus of cell is hit by ∼1 μm electron or X-ray beam and observe its repair by proteins and enzymes in live cells in-situ.

  15. Rapid dioxin analysis using accelerated solvent extraction (ASE), multi-column sample cleanup and Rtx-Dioxin2 gas chromatography column

    Energy Technology Data Exchange (ETDEWEB)

    Robinson, C.; Blow, P. [Australian Laboratory Services, Brisbane (Australia); Dorman, F. [Restek Corporation, Bellefonte, PA (United States)

    2004-09-15

    One of the main aims of many dioxin analysis laboratories is to reduce sample turnaround times to the absolute minimum. Often shorter times between sample receipt and reporting of results can attract a premium price for the analysis. It is generally accepted that the GC-MS portion of dioxin/PCB analysis is not the rate determining step in the overall scheme. Therefore, sample extraction and clean up is the obvious step to investigate for time-saving purposes. The use of accelerated solvent extraction (ASE) and multi column cleanup has been investigated for soil, sediment, air sampling media (XAD-2 resin) and fly-ash samples. For water samples the ASE step is replaced with a liquid/liquid separatory funnel extraction. Environmental analyses regularly require the use of two GC-MS runs to produce dioxin results that may be relied upon. The use of the classical 5MS type column coupled with the more polar 2331 type to produce final results is typical. The innovative capillary GC column, Rtx-Dioxin2, has offered the possibility of performing a dioxin analysis in a single GC-MS run. The analysis of the WHO-12 PCB (PCBs 77, 81, 105, 114, 118, 123, 126, 156, 157, 167, 169 and 189) congeners has also been investigated using this column.

  16. Accelerated Analyte Uptake on Single Beads in Microliter-scale Batch Separations using Acoustic Streaming: Plutonium Uptake by Anion Exchange for Analysis by Mass Spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Paxton, Walter F.; O' Hara, Matthew J.; Peper, Shane M.; Petersen, Steven L.; Grate, Jay W.

    2008-06-01

    The use of acoustic streaming as a non-contact mixing platform to accelerate mass transport-limited diffusion processes in small volume heterogeneous reactions has been investigated. Single bead anion exchange of plutonium at nanomolar and sub-picomolar concentrations in 20 microliter liquid volumes was used to demonstrate the effect of acoustic mixing. Pu uptake rates on individual ~760 micrometer diameter AG 1x4 anion exchange resin beads were determined using acoustic mixing and compared with Pu uptake rates achieved by static diffusion alone. An 82 MHz surface acoustic wave (SAW) device was placed in contact with the underside of a 384-well microplate containing flat-bottomed semiconical wells. Acoustic energy was coupled into the solution in the well, inducing acoustic streaming. Pu uptake rates were determined by the plutonium remaining in solution after specific elapsed time intervals, using liquid scintillation counting (LSC) for nanomolar concentrations and thermal ionization mass spectrometry (TIMS) analysis for the sub-picomolar concentration experiments. It was found that this small batch uptake reaction could be accelerated by a factor of about five-fold or more, depending on the acoustic power applied.

  17. 浅谈固定资产加速折旧法的应用%Analysis on the Application of the Accelerated Depreciation Method of Fixed Asset

    Institute of Scientific and Technical Information of China (English)

    王晓东

    2013-01-01

    Following the development of the market economy, enterprise financial management is also in constant change. This paper mainly discusses the deepening of the market competitiveness of enterprises in the process of operation. Analysis on influence of using the accelerated depreciation method of fixed asset to count and draw the depreciation of fixed assets of industrial accounting data and business income tax is given. lastly, the important significance of the accelerated depreciation of fixed assets is expounded.%  随着市场经济发展不断加快,企业财务管理也在不断的变化之中。本文主要讨论企业在运行过程中对市场竞争力不断加深,其在使用加速折旧法计提固定资产折旧对企业会计信息、企业所得税的影响进行了分析,并阐述了对固定资产进行加速折旧的重要意义。

  18. Vol. 34 - Optimization of quench protection heater performance in high-field accelerator magnets through computational and experimental analysis

    CERN Document Server

    Salmi, Tiina

    2016-01-01

    Superconducting accelerator magnets with increasingly hi gh magnetic fields are being designed to improve the performance of the Large Hadron Collider (LHC) at CERN. One of the technical challenges is the magnet quench p rotection, i.e., preventing damage in the case of an unexpected loss of superc onductivity and the heat generation related to that. Traditionally this is d one by disconnecting the magnet current supply and using so-called protection he aters. The heaters suppress the superconducting state across a large fraction of the winding thus leading to a uniform dissipation of the stored energy. Preli minary studies suggested that the high-field Nb 3 Sn magnets under development for the LHC luminosity upgrade (HiLumi) could not be reliably protected using the existing heaters. In this thesis work I analyzed in detail the present state-of-the-art protection heater technology, aiming to optimize its perfo rmance and evaluate the prospects in high-field magnet protection. The heater efficiency analyses ...

  19. Epistasis between IL1A, IL1B, TNF, HTR2A, 5-HTTLPR and TPH2 Variations Does Not Impact Alcohol Dependence Disorder Features

    Directory of Open Access Journals (Sweden)

    Anastasios Kalofoutis

    2009-07-01

    Full Text Available We assessed a set of biological (HDL, LDL, SGOT,SGPT, GGT, HTc, Hb and T levels and psychometric variables (investigated through HAM-D, HAM-A, GAS, Liebowitz Social Anxiety Scale, Mark & Mathews Scale, Leyton scale, and Pilowski scale in a sample of 64 alcohol dependent patients, at baseline and after a detoxification treatment. Moreover, we recruited 47 non-consanguineous relatives who did not suffer alcohol related disorders and underwent the same tests. In both groups we genotyped 11 genetic variations (rs1800587; rs3087258; rs1799724; 5-HTTLPR; rs1386493; rs1386494; rs1487275; rs1843809; rs4570625; rs2129575; rs6313 located in genes whose impact on alcohol related behaviors and disorders has been hypothesized (IL1A, IL1B, TNF, 5-HTTLPR, TPH2 and HTR2A. We analyzed the epistasis of these genetic variations upon the biological and psychological dimensions in the cases and their relatives. Further on, we analyzed the effects of the combined genetic variations on the short – term detoxification treatment efficacy. Finally, being the only not yet investigated variation within this sample, we analyzed the impact of the rs6313 alone on baseline assessment and treatment efficacy. We detected the following results: the couple rs6313 + rs2129575 affected the Leyton -Trait at admission (p = 0.01 (obsessive-compulsive trait, whilst rs1800587 + 5-HTTLPR impacted the Pilowski test at admission (p = 0.01 (hypochondriac symptoms. These results did not survive Bonferroni correction (p ≤ 0.004. This lack of association may depend on the incomplete gene coverage or on the small sample size which limited the power of the study. On the other hand, it may reflect a substantial absence of relevance of the genotype variants toward the alcohol related investigated dimensions. Nonetheless, the marginal significance we detected could witness an informative correlation worth investigating in larger samples.

  20. Epistasis between COMT Val158Met and DRD3 Ser9Gly polymorphisms and cognitive function in schizophrenia: genetic influence on dopamine transmission

    Directory of Open Access Journals (Sweden)

    Alexandre A. Loch

    2015-09-01

    Full Text Available Objective:To assess the relationship between cognitive function, a proposed schizophrenia endophenotype, and two genetic polymorphisms related to dopamine function, catechol-O-methyl transferase (COMT Val158Met and dopamine receptor 3 (DRD3 Ser9Gly.Methods:Fifty-eight outpatients with schizophrenia/schizoaffective disorder and 88 healthy controls underwent neurocognitive testing and genotyping. Analyses of covariance (ANCOVAs using age, sex, and years of education as covariates compared cognitive performance for the proposed genotypes in patients and controls. ANCOVAs also tested for the epistatic effect of COMT and DRD3 genotype combinations on cognitive performance.Results:For executive functioning, COMT Val/Val patients performed in a similar range as controls (30.70-33.26 vs. 35.53-35.67, but as COMT Met allele frequency increased, executive functioning worsened. COMT Met/Met patients carrying the DRD3 Ser/Ser genotype performed poorest (16.184 vs. 27.388-31.824. Scores of carriers of this COMT/DRD3 combination significantly differed from all DRD3 Gly/Gly combinations (p < 0.05, from COMT Val/Met DRD3 Ser/Gly (p = 0.02, and from COMT Val/Val DRD3 Ser/Ser (p = 0.01 in patients. It also differed significantly from all control scores (p < 0.001.Conclusion:Combined genetic polymorphisms related to dopamine neurotransmission might influence executive function in schizophrenia. Looking at the effects of multiple genes on a single disease trait (epistasis provides a comprehensive and more reliable way to determine genetic effects on endophenotypes.

  1. Accelerated tryptic digestion for the analysis of biopharmaceutical monoclonal antibodies in plasma by liquid chromatography with tandem mass spectrometric detection.

    Science.gov (United States)

    Lesur, Antoine; Varesio, Emmanuel; Hopfgartner, Gérard

    2010-01-01

    Accelerated tryptic digestion of a therapeutic protein including microwave irradiation and thermal transfer by convection at 60 degrees C and 37 degrees C was investigated. An analytical setup was devised to follow the protein digestion rate using 1D gel electrophoresis and liquid chromatography coupled a triple quadrupole linear ion trap mass spectrometer. The formation kinetic of its tryptic peptides was monitored in the selected monitoring mode (LC-SRM/MS). Different digestion end points (e.g. 2, 5, 10, 15, 30 and 60min) as well as an overnight digestion were tested using a therapeutic human monoclonal antibody (mAb) with the goal of its LC-SRM/MS quantification in human plasma. The peptides from the human mAb were generated at different rates and were classified into three categories: (1) the fast forming peptides, (2) the slow forming peptides and (3) the peptides degrading over time. For many monitored peptides, a heating temperature of 37 degrees C with a 750rpm mixing applied for at least 30min provided equivalent results to microwave-assisted digestion and generally allowed the achievement of an equivalent peptide concentration as an overnight digestion carried out at 37 degrees C. The disappearance of the protein of the heavy and light chains can be monitored by 1D gel electrophoresis but was found not to be representative of the final tryptic peptide concentrations. For quantitative purposes a stable isotope labeled version ((13)C(4), (15)N(1)) of the therapeutic protein was used. The labeled protein as internal standard was found to be very efficient to compensate for incomplete digestion or losses during sample preparation. PMID:19939394

  2. The new external ion beam analysis setup at the Demokritos Tandem accelerator and first applications in cultural heritage

    Science.gov (United States)

    Sokaras, Dimosthenis; Bistekos, Euthimios; Georgiou, Lambros; Salomon, Joseph; Bogovac, Mladen; Aloupi-Siotis, Eleni; Paschalis, Vasilis; Aslani, Ioanna; Karabagia, Sofia; Lagoyannis, Anastasios; Harissopulos, Sotirios; Kantarelou, Vasiliki; Karydas, Andreas-Germanos

    2011-03-01

    At the 5.5 MV Tandem VdG accelerator of the Institute of Nuclear Physics of N.C.S.R. "Demokritos", Athens, Greece, an external ion-beam set-up has been recently developed and installed. The aim of this development was to integrate the analytical capabilities of the PIXE, RBS and PIGE ion beam techniques in one experimental set-up, so that to attain a complete elemental and near surface structural characterization of samples in an almost non-destructive way and without any limitation concerning their size or conductive state. A careful 3D mechanical drawing optimized the set-up experimental parameters achieving probe dimensions at the millimeter range (1 mm 2) and fulfilling the special requirements imposed for optimum performance of the aforementioned techniques, including the possibility to use heavier, than protons, ion beams. For the digital pulse processing of the X-ray, γ-ray and charged particle detector signals, novel hardware and software tools were developed based on a custom FPGA configuration. The first applications were focused in the quality control of materials that have been intentionally contaminated with a particular tracer-element ("tagged" materials). The tagged materials which were developed and tested are technologically authentic replicas of ancient attic ceramics with black glazed decoration. Analytical diagnostic studies were carried out for a few representative paintings of contemporary Greek painters in order to identify and document materials/pigments and techniques and eventually to prevent trade of fakes. Finally, ancient glass beads were also examined with respect to the sodium concentration and its in-depth homogeneity.

  3. The new external ion beam analysis setup at the Demokritos Tandem accelerator and first applications in cultural heritage

    Energy Technology Data Exchange (ETDEWEB)

    Sokaras, Dimosthenis, E-mail: dsokaras@inp.demokritos.g [Institute of Nuclear Physics, N.C.S.R. ' Demokritos' , Aghia Paraskevi, 15310 Athens (Greece); Bistekos, Euthimios; Georgiou, Lambros [Philon Models, 18541 Piraeus (Greece); Salomon, Joseph [Laboratoire du C2RMF, Centre de Rechereche et de Restauration des Musees du France, 75001 Paris (France); Bogovac, Mladen [Institute Ruder Boskovic, 10002 Zagreb (Croatia); Aloupi-Siotis, Eleni [Thetis Authentics Ltd., 11636 Athens (Greece); Paschalis, Vasilis [Benaki Museum, 10674 Athens (Greece); Aslani, Ioanna [Thetis Authentics Ltd., 11636 Athens (Greece); Karabagia, Sofia; Lagoyannis, Anastasios; Harissopulos, Sotirios; Kantarelou, Vasiliki [Institute of Nuclear Physics, N.C.S.R. ' Demokritos' , Aghia Paraskevi, 15310 Athens (Greece); Karydas, Andreas-Germanos [Institute of Nuclear Physics, N.C.S.R. ' Demokritos' , Aghia Paraskevi, 15310 Athens (Greece); Nuclear Spectrometry and Applications Laboratory, International Atomic Energy Agency (IAEA), 2444 Seibersdorf (Austria)

    2011-03-01

    At the 5.5 MV Tandem VdG accelerator of the Institute of Nuclear Physics of N.C.S.R. 'Demokritos', Athens, Greece, an external ion-beam set-up has been recently developed and installed. The aim of this development was to integrate the analytical capabilities of the PIXE, RBS and PIGE ion beam techniques in one experimental set-up, so that to attain a complete elemental and near surface structural characterization of samples in an almost non-destructive way and without any limitation concerning their size or conductive state. A careful 3D mechanical drawing optimized the set-up experimental parameters achieving probe dimensions at the millimeter range (1 mm{sup 2}) and fulfilling the special requirements imposed for optimum performance of the aforementioned techniques, including the possibility to use heavier, than protons, ion beams. For the digital pulse processing of the X-ray, {gamma}-ray and charged particle detector signals, novel hardware and software tools were developed based on a custom FPGA configuration. The first applications were focused in the quality control of materials that have been intentionally contaminated with a particular tracer-element ('tagged' materials). The tagged materials which were developed and tested are technologically authentic replicas of ancient attic ceramics with black glazed decoration. Analytical diagnostic studies were carried out for a few representative paintings of contemporary Greek painters in order to identify and document materials/pigments and techniques and eventually to prevent trade of fakes. Finally, ancient glass beads were also examined with respect to the sodium concentration and its in-depth homogeneity.

  4. Production yield of produced radioisotopes from 100 MeV proton beam on lead target for shielding analysis of large accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Oranj, Leila Mokhtari; Oh, Joo Hee; Jung, Nam Suk; Bae, O Ryun; Lee, Hee Seock [Div. of Advanced Nuclear Engineering, POSTECH, Pohang (Korea, Republic of)

    2014-11-15

    In this work, the production yield of major shielding material, a lead, was investigated using 100 MeV protons of KOMAC accelerator facility. For the analysis of the experimental data, the activity has been calculated using the FLUKA Monte Carlo code and analytical methods. The cross section data and the stopping power in the irradiated assembly were calculated by TALYS and SRIM codes in the analytical method, respectively. Consequently, the experimental production yield of produced radioisotopes was compared with the data that are based on Monte Carlo calculations and analytical studies. In this research, the {sup nat}Pb(p, x) reaction was studied using experimental measurements, Monte Carlo simulations and analytical methods. Rereading to the experimental measurements, we demonstrate that both Monte Carlo simulation and analytical methods could be useful tools for the estimation of production yield of this reaction.

  5. Bulk Analysis Method of Gold Determination in Ores Using Epithermal Neutrons of Electron Accelerator Microtron MT-22

    CERN Document Server

    Gerbish, Sh; Baatarkhuu, D; Ganbold, G; Belov, A G

    2004-01-01

    Bulk analysis method of gold determination in ores by Instrumental Neutron Activation Analysis (INAA) is described. The powder (100-200 mesh) samples were irradiated in Cd foils of 1 mm thick with photo-neutrons at the Microtron MT-22 of the Nuclear Research Center, Mongolian State University (Ulaanbaatar). The sensitivity of 0.1 mg/kg Au can be obtained using 30-50 g samples and irradiation time of 1-2 h.

  6. Microwave View on Particle Acceleration in Flares

    CERN Document Server

    Fleishman, Gregory D

    2013-01-01

    The thermal-to-nonthermal partition was found to vary greatly from one flare to another resulting in a broad variety of cases from 'heating without acceleration' to 'acceleration without heating'. Recent analysis of microwave data of these differing cases suggests that a similar acceleration mechanism, forming a power-law nonthermal tail up to a few MeV or even higher, operates in all the cases. However, the level of this nonthermal spectrum compared to the original thermal distribution differs significantly from one case to another, implying a highly different thermal-to-nonthermal energy partition in various cases. This further requires a specific mechanism capable of extracting the charged particles from the thermal pool and supplying them to a bulk acceleration process to operate in flares \\textit{in addition} to the bulk acceleration process itself, which, in contrast, efficiently accelerates the seed particles, while cannot accelerate the thermal particles. Within this 'microwave' view on the flare ener...

  7. High-Intensity Proton Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Jay L. Hirshfield

    2011-12-27

    Analysis is presented for an eight-cavity proton cyclotron accelerator that could have advantages as compared with other accelerators because of its potentially high acceleration gradient. The high gradient is possible since protons orbit in a sequence of TE111 rotating mode cavities of equally diminishing frequencies with path lengths during acceleration that greatly exceed the cavity lengths. As the cavities operate at sequential harmonics of a basic repetition frequency, phase synchronism can be maintained over a relatively wide injection phase window without undue beam emittance growth. It is shown that use of radial vanes can allow cavity designs with significantly smaller radii, as compared with simple cylindrical cavities. Preliminary beam transport studies show that acceptable extraction and focusing of a proton beam after cyclic motion in this accelerator should be possible. Progress is also reported on design and tests of a four-cavity electron counterpart accelerator for experiments to study effects on beam quality arising from variations injection phase window width. This device is powered by four 500-MW pulsed amplifiers at 1500, 1800, 2100, and 2400 MHz that provide phase synchronous outputs, since they are driven from a with harmonics derived from a phase-locked 300 MHz source.

  8. Accelerated partial breast irradiation using once-daily fractionation: analysis of 312 cases with four years median follow-up

    Directory of Open Access Journals (Sweden)

    Shaikh Arif Y

    2012-02-01

    Full Text Available Abstract Background There are limited data on accelerated partial breast irradiation (APBI using external beam techniques. Moreover, there are recent reports of increased fibrosis and unacceptable cosmesis with APBI using external beam with BID fractionation. We adopted a once daily regimen of APBI with fractionation similar to that shown to be effective in a Canadian randomized trial of whole breast irradiation. It is unclear whether patients with DCIS or invasive lobular carcinoma (ILC are suitable for APBI. Methods The retrospective cohort included 310 patients with 312 tumors of T1-T2N0-N1micM0 invasive ductal carcinoma (IDC, ILC, or Tis (DCIS treated with APBI via external beam. Most patients were treated using IMRT with 16 daily fractions of 270 cGy to a dose of 4320 cGy. The target volume included the lumpectomy cavity plus 1.0 cm to account for microscopic disease and an additional 0.5 to 1.0 cm for setup uncertainty and breathing motion. Ipsilateral breast failure (IBF was pathologically confirmed as a local failure (LF or an elsewhere failure (EF. Results Median follow-up was 49 months. Among the 312 cases, 213 were IDC, 31 ILC, and 68 DCIS. Median tumor size was 1.0 cm. There were 9 IBFs (2.9% including 5 LFs and 4 EFs. The IBF rates among patients with IDC, ILC, and DCIS were 2.4%, 3.2%, and 4.4%, respectively, with no significant difference between histologies. When patients were analyzed by the ASTRO APBI consensus statement risk groups, 32% of treated cases were considered suitable, 50% cautionary, and 18% unsuitable. The IBF rates among suitable, cautionary, and unsuitable patients were 4.0%, 2.6%, and 1.8%, respectively, with no significant difference between risk groups. Acute skin reactions were rare and long-term cosmetic outcome was very good to excellent. Conclusions External beam APBI with once daily fractionation has a low rate of IBF consistent with other published APBI studies. The ASTRO risk stratification did not

  9. Effectiveness of surgery and individualized high-dose hyperfractionated accelerated radiotherapy on survival in clinical stage I non-small cell lung cancer. A propensity score matched analysis

    International Nuclear Information System (INIS)

    Background and purpose: Surgery is considered the treatment of choice for early-stage non-small cell lung cancer (NSCLC). Patients with poor pulmonary function or other comorbidities are treated with radiotherapy. The objective of this investigation is to compare the 3-year survival of two early-stage NSCLC populations treated in two different hospitals, either by surgical resection (lobectomy) or by individualized high-dose accelerated radiotherapy, after matching patients by propensity scoring analysis. Methods: A retrospective comparative study has been performed on two series of consecutive patients with cytohistological diagnosis of NSCLC, clinically staged IA by means of PET-scan (radiotherapy group) and pathologically staged IA (surgery group). Results: A total of 157 cases were initially selected for the analysis (110 operated and 47 treated by radiotherapy). Patients in the radiotherapy group were older, with higher comorbidity and lower FEV1% with 3-years probability of survival for operated patients higher than that found for patients treated by radiotherapy. After matching by propensity scoring (using age and FEV1%), differences disappear and 3-years probability of survival had no statistical differences. Conclusions: Although this is a non-randomized retrospective analysis, we have not found 3-years survival differences after matching cases between surgery and radiotherapy. Nevertheless, data presented here support the continuous investigation for non-surgical alternatives in this disease.

  10. 2014 CERN Accelerator Schools: Plasma Wake Acceleration

    CERN Multimedia

    2014-01-01

    A specialised school on Plasma Wake Acceleration will be held at CERN, Switzerland from 23-29 November, 2014.   This course will be of interest to staff and students in accelerator laboratories, university departments and companies working in or having an interest in the field of new acceleration techniques. Following introductory lectures on plasma and laser physics, the course will cover the different components of a plasma wake accelerator and plasma beam systems. An overview of the experimental studies, diagnostic tools and state of the art wake acceleration facilities, both present and planned, will complement the theoretical part. Topical seminars and a visit of CERN will complete the programme. Further information can be found at: http://cas.web.cern.ch/cas/PlasmaWake2014/CERN-advert.html http://indico.cern.ch/event/285444/

  11. The direction of acceleration

    Science.gov (United States)

    Wilhelm, Thomas; Burde, Jan-Philipp; Lück, Stephan

    2015-11-01

    Acceleration is a physical quantity that is difficult to understand and hence its complexity is often erroneously simplified. Many students think of acceleration as equivalent to velocity, a ˜ v. For others, acceleration is a scalar quantity, which describes the change in speed Δ|v| or Δ|v|/Δt (as opposed to the change in velocity). The main difficulty with the concept of acceleration therefore lies in developing a correct understanding of its direction. The free iOS app AccelVisu supports students in acquiring a correct conception of acceleration by showing acceleration arrows directly at moving objects.

  12. The Los Alamos accelerator code group

    International Nuclear Information System (INIS)

    The Los Alamos Accelerator Code Group (LAACG) is a national resource for members of the accelerator community who use and/or develop software for the design and analysis of particle accelerators, beam transport systems, light sources, storage rings, and components of these systems. Below the authors describe the LAACG's activities in high performance computing, maintenance and enhancement of POISSON/SUPERFISH and related codes and the dissemination of information on the INTERNET

  13. Accelerated solvent extraction and analysis of tea polyphenols%茶多酚的加速溶剂萃取与分析

    Institute of Scientific and Technical Information of China (English)

    赵敏; 唐美华; 张之翼; 吕凤兰; 陈国松

    2012-01-01

    以毛尖茶叶为原料,用加速溶剂萃取法提取茶多酚粗品.用单因素试验研究和正交试验考察乙醇体积分数、温度和循环次数对萃取率的影响.用二极管阵列-高效液相色谱( DAD - HPLC)对照测定加速溶剂萃取的萘多酚粗品、微波辅助提取的萘多酚粗品和商品荼多酚.结果表明:茶多酚粗品的制备最佳条件为萃取温度160℃、乙醇体积分数60%、循环萃取2次.高温加速溶剂萃取法对茶多酚的粗提率较高,但其中儿茶素的总量却显著下降.降低提取温度,则茶多酚中的主要功能成分儿茶素的含量显著高于微波辅助提取法.%The gross tea polyphenols were extracted from Maojian tea by the accelerated solvent method. Single factor test and orthogonal design were used to explore the effects of ethanol volume fraction, temperature and cycle times on the extraction ratio. The comparison of gross polyphenols got from accelerated solvent extraction, microwave-assisted extraction and commodity was made by diode array detector-high performance liquid chromatography (DAD-HPLC) analysis. Results showed that the optimum operation conditions for gross polyphenlos extraction are 160 ℃ , 2 times, and 60% ethanol. The accelerated solvent extraction ratio at a high temperature was higher for the gross tea polyphenols and lower for the cate-chin. If the extraction temperature was dropped down to 40℃, the content of catechin was much higher than that from microwave-assisted extraction.

  14. Transmission electron microscopic x-ray quantitative analysis of human dentin at 200 kV accelerating voltage

    International Nuclear Information System (INIS)

    Qualitative and quantitative x-ray energy dispersive spectroscopy is now used successfully to analyze many features and processes in inorganic samples. When applied to inorganic samples, however, the results are often less satisfactory due to problems of preparation of organic samples, difficulty of measuring x-rays from organic samples, damage of the sample by the electron beam, and other practical problems. In the present study we used a high voltage transmission electron microscope equipped with an energy dispersive x-ray spectrometer to examine accurate quantitative standardless analysis of thin sections of an organic sample, human dentin. Based on our experiments we found the important parameters for quantitative analysis were sample thickness and appropriate choice of model sample. Further, we show that the method of Cliff and Lorimer can be used with biological samples at 200 kV, and we show that quantitative analysis of human dentin can be carried out at 200 kV. Finally, we show that areas of human dentin can be differentiated by their morphological characteristics and x-ray analyses obtained in the transmission electron microscope

  15. Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies

    Science.gov (United States)

    Cowper-Sal·lari, Richard; Cole, Michael D.; Karagas, Margaret R.; Lupien, Mathieu; Moore, Jason H.

    2010-01-01

    The conceptual foundation of the genome-wide association study (GWAS) has advanced unchecked since its conception. A revision might seem premature as the potential of GWAS has not been fully realized. Multiple technical and practical limitations need to be overcome before GWAS can be fairly criticized. But with the completion of hundreds of studies and a deeper understanding of the genetic architecture of disease, warnings are being raised. The results compiled to date indicate that risk-associated variants lie predominantly in non-coding regions of the genome. Additionally, alternative methodologies are uncovering large and heterogeneous sets of rare variants underlying disease. The fear is that, even in its fulfilment, the current GWAS paradigm might be incapable of dissecting all kinds of phenotypes. In the following text we review several initiatives that aim to overcome these limitations. The overarching theme of these studies is the inclusion of biological knowledge to both the analysis and interpretation of genotyping data. GWAS is uninformed of biology by design and although there is some virtue in its simplicity it is also its most conspicuous deficiency. We propose a framework in which to integrate these novel approaches, both empirical and theoretical, in the form of a genome-wide regulatory network (GWRN). By processing experimental data into networks, emerging data types based on chromatin-immunoprecipitation are made computationally tractable. This will give GWAS re-analysis efforts the most current and relevant substrates, and root them firmly on our knowledge of human disease. PMID:21197657

  16. Phase-plane analysis of gaze stabilization to high acceleration head thrusts: a continuum across normal subjects and patients with loss of vestibular function.

    Science.gov (United States)

    Peng, Grace C Y; Zee, David S; Minor, Lloyd B

    2004-04-01

    We investigated the vestibulo-ocular reflex (VOR) during high-acceleration, yaw-axis, head rotations in 12 normals and 15 patients with vestibular loss [7 unilateral vestibular deficient (UVD) and 8 bilateral vestibular deficient (BVD)]. We analyzed gaze stabilization within a 200-ms window after head rotation began, using phase planes, which allowed simultaneous analysis of gaze velocity and gaze position. These "gaze planes" revealed critical dynamic information not easily gleaned from traditional gain measurements. We found linear relationships between peak gaze-velocity and peak gaze-position error when normalized to peak head speed and position, respectively. Values fell on a continuum, increasing from normals, to normals tested with very high acceleration (VHA = 10,000-20,000 degrees/s2), to UVD patients during rotations toward the intact side, to UVD patients during rotations toward the lesioned side, to BVD patients. We classified compensatory gaze corrections as gaze-position corrections (GPCs) or gaze-velocity error corrections (GVCs). We defined patients as better-compensated when the value of their end gaze position was low relative to peak gaze position. In the gaze plane this criterion corresponded to relatively stereotyped patterns over many rotations, and appearance of high velocity (100-400 degrees/s) GPCs in the gaze plane ending quadrant (150-200 ms after head movement onset). In less-compensated patients, and normals at VHA, more GVCs were generated, and GPCs were generated only after gaze-velocity error was minimized. These findings suggest that challenges to compensatory vestibular function can be from vestibular deficiency or novel stimuli not previously experienced. Similar patterns of challenge and compensation were observed in both patients with vestibular loss and normal subjects.

  17. San Francisco Accelerator Conference

    International Nuclear Information System (INIS)

    'Where are today's challenges in accelerator physics?' was the theme of the open session at the San Francisco meeting, the largest ever gathering of accelerator physicists and engineers

  18. Improved plasma accelerator

    Science.gov (United States)

    Cheng, D. Y.

    1971-01-01

    Converging, coaxial accelerator electrode configuration operates in vacuum as plasma gun. Plasma forms by periodic injections of high pressure gas that is ionized by electrical discharges. Deflagration mode of discharge provides acceleration, and converging contours of plasma gun provide focusing.

  19. Standing wave linear accelerator

    International Nuclear Information System (INIS)

    Consideration is being given to standing wave linear accelerator containing generator, phase shifter, two accelerating resonator sections, charged particle injector and waveguide bridge. Its first arm is oined up with generator via the phase shifter, the second and the third ones-with accelerating sections and the fourth one - with HF-power absorber. HF-power absorber represents a section of circular diaphragmatic wavequide with transformer with input wave and intrawaveguide output load located between injector and the first accelerating section. The section possesses holes in side walls lying on accelerator axis. The distances between centers of the last cell of the fast accelerating section and the first cell of the second accelerating sectiOn equal (2n+3)lambda/4, where n=1, 2, 3..., lambda - wave length of generator. The suggested system enables to improve by one order spectral characteristics of accelerators as compared to the prototype in which magnetrons are used as generator

  20. Accelerator Technology Division

    Science.gov (United States)

    1992-04-01

    In fiscal year (FY) 1991, the Accelerator Technology (AT) division continued fulfilling its mission to pursue accelerator science and technology and to develop new accelerator concepts for application to research, defense, energy, industry, and other areas of national interest. This report discusses the following programs: The Ground Test Accelerator Program; APLE Free-Electron Laser Program; Accelerator Transmutation of Waste; JAERI, OMEGA Project, and Intense Neutron Source for Materials Testing; Advanced Free-Electron Laser Initiative; Superconducting Super Collider; The High-Power Microwave Program; (Phi) Factory Collaboration; Neutral Particle Beam Power System Highlights; Accelerator Physics and Special Projects; Magnetic Optics and Beam Diagnostics; Accelerator Design and Engineering; Radio-Frequency Technology; Free-Electron Laser Technology; Accelerator Controls and Automation; Very High-Power Microwave Sources and Effects; and GTA Installation, Commissioning, and Operations.

  1. High Energy Particle Accelerators

    CERN Multimedia

    Audio Productions, Inc, New York

    1960-01-01

    Film about the different particle accelerators in the US. Nuclear research in the US has developed into a broad and well-balanced program.Tour of accelerator installations, accelerator development work now in progress and a number of typical experiments with high energy particles. Brookhaven, Cosmotron. Univ. Calif. Berkeley, Bevatron. Anti-proton experiment. Negative k meson experiment. Bubble chambers. A section on an electron accelerator. Projection of new accelerators. Princeton/Penn. build proton synchrotron. Argonne National Lab. Brookhaven, PS construction. Cambridge Electron Accelerator; Harvard/MIT. SLAC studying a linear accelerator. Other research at Madison, Wisconsin, Fixed Field Alternate Gradient Focusing. (FFAG) Oakridge, Tenn., cyclotron. Two-beam machine. Comments : Interesting overview of high energy particle accelerators installations in the US in these early years. .

  2. Maximal Acceleration Is Nonrotating

    OpenAIRE

    Page, Don N.

    1997-01-01

    In a stationary axisymmetric spacetime, the angular velocity of a stationary observer that Fermi-Walker transports its acceleration vector is also the angular velocity that locally extremizes the magnitude of the acceleration of such an observer, and conversely if the spacetime is also symmetric under reversing both t and phi together. Thus a congruence of Nonrotating Acceleration Worldlines (NAW) is equivalent to a Stationary Congruence Accelerating Locally Extremely (SCALE). These congruenc...

  3. A Solid state accelerator

    International Nuclear Information System (INIS)

    We present a solid state accelerator concept utilizing particle acceleration along crystal channels by longitudinal electron plasma waves in a metal. Acceleration gradients of order 100 GV/cm are theoretically possible, but channeling radiation limits the maximum attainable energy to 105 TeV for protons. Beam dechanneling due to multiple scattering is substantially reduced by the high acceleration gradient. Plasma wave dissipation and generation in metals are also discussed

  4. Applications of particle accelerators

    International Nuclear Information System (INIS)

    Particle accelerators are now widely used in a variety of applications for scientific research, applied physics, medicine, industrial processing, while possible utilisation in power engineering is envisaged. Earlier presentations of this subject, given at previous CERN Accelerator School sessions have been updated with papers contributed to the first European Conference on Accelerators in Applied Research and Technology (ECAART) held in September 1989 in Frankfurt and to the Second European Particle Accelerator Conference in Nice in June 1990. (orig.)

  5. Accelerators at school

    International Nuclear Information System (INIS)

    Latest subject covered by the CERN Accelerator School was 'Applied Geodesy of Particle Accelerators', which attracted an impressive number of outside participants to CERN for a week in April. Since the forerunners of today's particle accelerators were demonstrated over 50 years ago, the positioning of accelerator components has progressed from the laboratory bench-top to tunnels tens of kilometres long. Despite this phenomenal growth in size, sub-millimetre accuracy is still required

  6. 基于小波变换的弹射加速度频谱分析%EJECTION ACCELERATION SPECTRUM ANALYSIS BASED ON WAVELET TRANSFORM

    Institute of Scientific and Technical Information of China (English)

    许丽艳; 史桂梅; 侯铁年

    2001-01-01

    基于小波变换可提取信号所需频率成分的特性,利用多个小波组合,设计较理想的带通滤波器,采用频谱细化法对航空弹射加速度信号作频谱分析,并将此法与经低通数字滤波器后得到的信号的FFT谱分析做了比较。结果表明,基于小波变换的频谱细化法比FFT谱分析法有较高的频率分辨率,实现起来也比较简单、容易,更适合于对频率分辨率要求较高的谱分析。%An idealer bandpassing filter was designed by using wavelet group and analysing ejection acceleration signal spectrum wiht spectrum zoom method.Compared with FFT spectrum analysis method,the result shows that frequency spectrum zoom method based on wavelet transform has higher frequency resolution rate than FFT spectrum method,moreover,is more simple and easier when performing.It's fit to spectrum analysis whose resolution rate is requested high.

  7. Exploratory Data Analysis of Acceleration Signals to Select Light-Weight and Accurate Features for Real-Time Activity Recognition on Smartphones

    Directory of Open Access Journals (Sweden)

    Seok-Won Lee

    2013-09-01

    Full Text Available Smartphone-based activity recognition (SP-AR recognizes users’ activities using the embedded accelerometer sensor. Only a small number of previous works can be classified as online systems, i.e., the whole process (pre-processing, feature extraction, and classification is performed on the device. Most of these online systems use either a high sampling rate (SR or long data-window (DW to achieve high accuracy, resulting in short battery life or delayed system response, respectively. This paper introduces a real-time/online SP-AR system that solves this problem. Exploratory data analysis was performed on acceleration signals of 6 activities, collected from 30 subjects, to show that these signals are generated by an autoregressive (AR process, and an accurate AR-model in this case can be built using a low SR (20 Hz and a small DW (3 s. The high within class variance resulting from placing the phone at different positions was reduced using kernel discriminant analysis to achieve position-independent recognition. Neural networks were used as classifiers. Unlike previous works, true subject-independent evaluation was performed, where 10 new subjects evaluated the system at their homes for 1 week. The results show that our features outperformed three commonly used features by 40% in terms of accuracy for the given SR and DW.

  8. Acceleration: It's Elementary

    Science.gov (United States)

    Willis, Mariam

    2012-01-01

    Acceleration is one tool for providing high-ability students the opportunity to learn something new every day. Some people talk about acceleration as taking a student out of step. In actuality, what one is doing is putting a student in step with the right curriculum. Whole-grade acceleration, also called grade-skipping, usually happens between…

  9. The CERN Accelerator School

    CERN Multimedia

    2016-01-01

    Introduction to accelerator physics The CERN Accelerator School: Introduction to Accelerator Physics, which should have taken place in Istanbul, Turkey, later this year has now been relocated to Budapest, Hungary.  Further details regarding the new hotel and dates will be made available as soon as possible on a new Indico site at the end of May.

  10. Accelerators and Dinosaurs

    CERN Document Server

    Turner, Michael Stanley

    2003-01-01

    Using naturally occuring particles on which to research might have made accelerators become extinct. But in fact, results from astrophysics have made accelerator physics even more important. Not only are accelerators used in hospitals but they are also being used to understand nature's inner workings by searching for Higgs bosons, CP violation, neutrino mass and dark matter (2 pages)

  11. Far field acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Fernow, R.C.

    1995-07-01

    Far fields are propagating electromagnetic waves far from their source, boundary surfaces, and free charges. The general principles governing the acceleration of charged particles by far fields are reviewed. A survey of proposed field configurations is given. The two most important schemes, Inverse Cerenkov acceleration and Inverse free electron laser acceleration, are discussed in detail.

  12. Quantitative analysis of results of quality control tests in linear accelerators used in radiotherapy; Analise quantitativa dos resultados de testes de controle de qualidade em aceleradores lineares usados em radioterapia

    Energy Technology Data Exchange (ETDEWEB)

    Passaro, Bruno M.; Rodrigues, Laura N. [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil); Videira, Heber S., E-mail: bruno.passaro@gmail.com [Universidade de Sao Paulo (HCFMRP/USP), Sao Paulo, SP (Brazil). Faculdade de Medicina. Hospital das Clinicas

    2013-04-15

    The aim of this study is to assess and analyze the stability of the calibration factor of three linear accelerators, as well as the other dosimetric parameters normally included in a program of quality control in radiotherapy. The average calibration factors of the accelerators for the period of approximately four years for the Clinac 600C and Clinac 6EX were (0.998±0.012) and (0.996±0.014), respectively. For the Clinac 2100CD 6 MV and 15 MV was (1.008±0.009) and (1.006±0.010), respectively, in a period of approximately four years. The data of the calibration factors were divided into four subgroups for a more detailed analysis of behavior over the years. Through statistical analysis of calibration factors, we found that for the 600C and Clinacs 2100CD, is an expected probability that more than 90% of cases the values are within acceptable ranges according to TG-142, while for the Clinac 6EX is expected around 85% since this had several exchanges of accelerator components. The values of TPR20,10 of three accelerators are practically constant and within acceptable limits according to the TG-142. It can be concluded that a detailed study of data from the calibration factor of the accelerators and TPR{sub 20},{sub 10} from a quantitative point of view, is extremely useful in a quality assurance program. (author)

  13. In situ X-ray pair distribution function analysis of accelerated carbonation of a synthetic calcium-silicate-hydrate gel

    Energy Technology Data Exchange (ETDEWEB)

    Morandeau, Antoine E.; White, Claire E. [Princeton

    2015-04-21

    Calcium–silicate–hydrate (C–S–H) gel is the main binder component in hydrated ordinary Portland cement (OPC) paste, and is known to play a crucial role in the carbonation of cementitious materials, especially for more sustainable alternatives containing supplementary cementitious materials. However, the exact atomic structural changes that occur during carbonation of C–S–H gel remain unknown. Here, we investigate the local atomic structural changes that occur during carbonation of a synthetic calcium–silicate–hydrate gel exposed to pure CO₂ vapour, using in situ X-ray total scattering measurements and subsequent pair distribution function (PDF) analysis. By analysing both the reciprocal and real-space scattering data as the C–S–H carbonation reaction progresses, all phases present during the reaction (crystalline and non-crystalline) have been identified and quantified, with the results revealing the emergence of several polymorphs of crystalline calcium carbonate (vaterite and calcite) in addition to the decalcified C–S–H gel. Furthermore, the results point toward residual calcium being present in the amorphous decalcified gel, potentially in the form of an amorphous calcium carbonate phase. As a result of the quantification process, the reaction kinetics for the evolution of the individual phases have been obtained, revealing new information on the rate of growth/dissolution for each phase associated with C–S–H gel carbonation. Moreover, the investigation reveals that the use of real space diffraction data in the form of PDFs enables more accurate determination of the phases that develop during complex reaction processes such as C–S–H gel carbonation in comparison to the conventional reciprocal space Rietveld analysis approach.

  14. Research on feedback system of synchrotron accelerator

    International Nuclear Information System (INIS)

    It is a very complex problem to use feedback control system in synchrotron accelerator. Some scientists design feedback control system to make high energy beam stable in synchrotron accelerator, but it is very rare to see theoretically analysis feedback system in synchrotron accelerator by using new concept of control model. One new feedback control model is a fresh idea to discuss the feedback system more deeply. A topic about feedback control system discussed here will be useful for synchrotron accelerator design and operation. It is an good idea for some scientists and technician to continue study. (authors)

  15. Beam dynamics in high energy particle accelerators

    CERN Document Server

    Wolski, Andrzej

    2014-01-01

    Particle accelerators are essential tools for scientific research in fields as diverse as high energy physics, materials science and structural biology. They are also widely used in industry and medicine. Producing the optimum design and achieving the best performance for an accelerator depends on a detailed understanding of many (often complex and sometimes subtle) effects that determine the properties and behavior of the particle beam. Beam Dynamics in High Energy Particle Accelerators provides an introduction to the concepts underlying accelerator beam line design and analysis, taking an approach that emphasizes the elegance of the subject and leads into the development of a range of powerful techniques for understanding and modeling charged particle beams.

  16. Lectures in accelerator theory

    International Nuclear Information System (INIS)

    Lecture I deals with the behavior of particles in the nonlinear field arising from the electromagnetic interaction of colliding beams. The case treated, that of counter-rotating proton beams crossing each other at a non-zero angle, has the simple feature that the force between the beam is one dimensional. In lecture II, an analysis of the development of traveling waves on particle beams is presented. The situation studied is that of a uniform beam current in a circular accelerator and the excitation for the coherent motion is induced by the resistivity of the vacuum chamber wall. Finally, in lecture III, a description of the current accumulation process used at the proton storage rings at CERN (The ISR) is given. Particle pulses of rather low average current are injected and stored along the length and width of the vacuum chamber. The efficiency is very high and large currents (over 40 amperes) have been achieved

  17. Direct Laser Acceleration in Laser Wakefield Accelerators

    OpenAIRE

    Shaw, Jessica

    2016-01-01

    In this dissertation, the direct laser acceleration (DLA) of ionization-injected electrons in a laser wakefield accelerator (LWFA) operating in the quasi-blowout regime has been investigated through experiment and simulation. In the blowout regime of LWFA, the radiation pressure of an intense laser pulse can push a majority of the plasma electrons out and around the main body of the pulse. The expelled plasma electrons feel the electrostatic field of the relatively-stationary ions and are t...

  18. The Accelerator Reliability Forum

    CERN Document Server

    Lüdeke, Andreas; Giachino, R

    2014-01-01

    A high reliability is a very important goal for most particle accelerators. The biennial Accelerator Reliability Workshop covers topics related to the design and operation of particle accelerators with a high reliability. In order to optimize the over-all reliability of an accelerator one needs to gather information on the reliability of many different subsystems. While a biennial workshop can serve as a platform for the exchange of such information, the authors aimed to provide a further channel to allow for a more timely communication: the Particle Accelerator Reliability Forum [1]. This contribution will describe the forum and advertise it’s usage in the community.

  19. A variable acceleration calibration system

    Science.gov (United States)

    Johnson, Thomas H.

    2011-12-01

    A variable acceleration calibration system that applies loads using gravitational and centripetal acceleration serves as an alternative, efficient and cost effective method for calibrating internal wind tunnel force balances. Two proof-of-concept variable acceleration calibration systems are designed, fabricated and tested. The NASA UT-36 force balance served as the test balance for the calibration experiments. The variable acceleration calibration systems are shown to be capable of performing three component calibration experiments with an approximate applied load error on the order of 1% of the full scale calibration loads. Sources of error are indentified using experimental design methods and a propagation of uncertainty analysis. Three types of uncertainty are indentified for the systems and are attributed to prediction error, calibration error and pure error. Angular velocity uncertainty is shown to be the largest indentified source of prediction error. The calibration uncertainties using a production variable acceleration based system are shown to be potentially equivalent to current methods. The production quality system can be realized using lighter materials and a more precise instrumentation. Further research is needed to account for balance deflection, forcing effects due to vibration, and large tare loads. A gyroscope measurement technique is shown to be capable of resolving the balance deflection angle calculation. Long term research objectives include a demonstration of a six degree of freedom calibration, and a large capacity balance calibration.

  20. Bayes Analysis and Reliability Implications of Stress-Rupture Testing a Kevlar/Epoxy COPV Using Temperature and Pressure Acceleration

    Science.gov (United States)

    Phoenix, S. Leigh; Kezirian, Michael T.; Murthy, Pappu L. N.

    2009-01-01

    Composite Overwrapped Pressure Vessels (COPVs) that have survived a long service time under pressure generally must be recertified before service is extended. Flight certification is dependent on the reliability analysis to quantify the risk of stress rupture failure in existing flight vessels. Full certification of this reliability model would require a statistically significant number of lifetime tests to be performed and is impractical given the cost and limited flight hardware for certification testing purposes. One approach to confirm the reliability model is to perform a stress rupture test on a flight COPV. Currently, testing of such a Kevlar49 (Dupont)/epoxy COPV is nearing completion. The present paper focuses on a Bayesian statistical approach to analyze the possible failure time results of this test and to assess the implications in choosing between possible model parameter values that in the past have had significant uncertainty. The key uncertain parameters in this case are the actual fiber stress ratio at operating pressure, and the Weibull shape parameter for lifetime; the former has been uncertain due to ambiguities in interpreting the original and a duplicate burst test. The latter has been uncertain due to major differences between COPVs in the database and the actual COPVs in service. Any information obtained that clarifies and eliminates uncertainty in these parameters will have a major effect on the predicted reliability of the service COPVs going forward. The key result is that the longer the vessel survives, the more likely the more optimistic stress ratio model is correct. At the time of writing, the resulting effect on predicted future reliability is dramatic, increasing it by about one "nine," that is, reducing the predicted probability of failure by an order of magnitude. However, testing one vessel does not change the uncertainty on the Weibull shape parameter for lifetime since testing several vessels would be necessary.

  1. Induction linear accelerators

    Science.gov (United States)

    Birx, Daniel

    1992-03-01

    Among the family of particle accelerators, the Induction Linear Accelerator is the best suited for the acceleration of high current electron beams. Because the electromagnetic radiation used to accelerate the electron beam is not stored in the cavities but is supplied by transmission lines during the beam pulse it is possible to utilize very low Q (typicallymarriage of liner accelerator technology and nonlinear magnetic compressors has produced some unique capabilities. It now appears possible to produce electron beams with average currents measured in amperes, peak currents in kiloamperes and gradients exceeding 1 MeV/meter, with power efficiencies approaching 50%. The nonlinear magnetic compression technology has replaced the spark gap drivers used on earlier accelerators with state-of-the-art all-solid-state SCR commutated compression chains. The reliability of these machines is now approaching 1010 shot MTBF. In the following paper we will briefly review the historical development of induction linear accelerators and then discuss the design considerations.

  2. Accelerated Stem Growth Rates and Improved Fiber Properties of Loblolly Pine: Functional Analysis Of CyclinD from Pinus taeda

    Energy Technology Data Exchange (ETDEWEB)

    Dr. John Cairney, School of Biology and Institute of Paper Science and Technology @ Georgia Tech, Georgia Institute of Technology; Dr. Gary Peter, University of Florida; Dr. Ulrika Egertsdotter, Dept. of Forestry, Virgina Tech; Dr. Armin Wagner, New Zealand Forest Research Institute Ltd. (Scion Research.)

    2005-11-30

    A sustained supply of low-cost, high quality raw materials is essential for the future success of the U.S. forest products industry. To maximize stem (trunk) growth, a fundamental understanding of the molecular mechanisms that regulate cell divisions within the cambial meristem is essential. We hypothesize that auxin levels within the cambial meristem regulate cyclin gene expression and this in turn controls cell cycle progression as occurs in all eukaryotic cells. Work with model plant species has shown that ectopic overexpression of cyclins promotes cell division thereby increasing root growth > five times. We intended to test whether ectopic overexpression of cambial cyclins in the cambial zone of loblolly pine also promotes cell division rates that enhance stem growth rates. Results generated in model annual angiosperm systems cannot be reliably extrapolated to perennial gymnosperms, thus while the generation and development of transgenic pine is time consuming, this is the necessary approach for meaningful data. We succeeded in isolating a cyclin D gene and Clustal analysis to the Arabidopsis cyclin D gene family indicates that it is more closely related to cyclin D2 than D1 or D3 Using this gene as a probe we observed a small stimulation of cyclin D expression in somatic embryo culture upon addition of auxin. We hypothesized that trees with more cells in the vascular cambial and expansion zones will have higher cyclin mRNA levels. We demonstrated that in trees under compressive stress where the rates of cambial divisions are increased on the underside of the stem relative to the top or opposite side, there was a 20 fold increase in the level of PtcyclinD1 mRNA on the compressed side of the stem relative to the opposite. This suggests that higher secondary growth rates correlate with PtcyclinD1 expression. We showed that larger diameter trees show more growth during each year and that the increased growth in loblolly pine trees correlates with more cell

  3. Measurement of \\Omega_m, \\Omega_{\\Lambda} from a blind analysis of Type Ia supernovae with CMAGIC: Using color information to verify the acceleration of the Universe

    CERN Document Server

    Conley, A; Amanullah, R; Commins, E D; Fadeev, V; Folatelli, G; Garavini, G; Gibbons, R; Goldhaber, G; Goobar, A; Groom, D E; Hook, I; Howell, D A; Kim, A G; Knop, R A; Kowalski, M; Kuznetsova, N; Lidman, C; Nobili, S; Nugent, P; Pain, R; Perlmutter, S; Smith, E; Spadafora, A L; Stanishev, V; Strovink, M; Thomas, R C; Wang, L; Wood-Vasey, W M

    2006-01-01

    We present measurements of \\Omega_m and \\Omega_{\\Lambda} from a blind analysis of 21 high-redshift supernovae using a new technique (CMAGIC) for fitting the multi-color lightcurves of Type Ia supernovae, first introduced in Wang et al. (2003). CMAGIC takes advantage of the remarkably simple behavior of Type Ia supernovae on color-magnitude diagrams, and has several advantages over current techniques based on maximum magnitudes. Among these are a reduced sensitivity to host galaxy dust extinction, a shallower luminosity-width relation, and the relative simplicity of the fitting procedure. This allows us to provide a cross check of previous supernova cosmology results, despite the fact that current data sets were not observed in a manner optimized for CMAGIC. We describe the details of our novel blindness procedure, which is designed to prevent experimenter bias. The data are broadly consistent with the picture of an accelerating Universe, and agree with a flat Universe within 1.7\\sigma, including systematics. ...

  4. Analysis of K-net and Kik-net data: implications for ground motion prediction - acceleration time histories, response spectra and nonlinear site response

    International Nuclear Information System (INIS)

    This thesis intends to characterize ground motion during earthquake. This work is based on two Japanese networks. It deals with databases of shallow events, depth less than 25 km, with magnitude between 4.0 and 7.3. The analysis of K-net allows to compute a spectral ground motion prediction equation and to review the shape of the Eurocode 8 design spectra. We show the larger amplification at short period for Japanese data and bring in light the soil amplification that takes place at large period. In addition, we develop a new empirical model for simulating synthetic stochastic nonstationary acceleration time histories. By specifying magnitude, distance and site effect, this model allows to produce many time histories, that a seismic event is liable to produce at the place of interest. Furthermore, the study of near-field borehole records of the Kik-net allows to explore the validity domain of predictive equations and to explain what occurs by extrapolating ground motion predictions. Finally, we show that nonlinearity reduces the dispersion of ground motion at the surface. (author)

  5. Sampling and analysis plan for the Bear Creek Valley Boneyard/Burnyard Accelerated Action Project, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    International Nuclear Information System (INIS)

    In the Bear Creek Valley Watershed Remedial Investigation, the Boneyard/Burnyard was identified as the source of the largest releases of uranium into groundwater and surface water in Bear Creek Valley. The proposed action for remediation of this site is selective excavation and removal of source material and capping of the remainder of the site. The schedule for this action has been accelerated so that this is the first remedial action planned to be implemented in the Bear Creek Valley Record of Decision. Additional data needs to support design of the remedial action were identified at a data quality objectives meeting held for this project. Sampling at the Boneyard/Burnyard will be conducted through the use of a phased approach. Initial or primary samples will be used to make in-the-field decisions about where to locate follow-up or secondary samples. On the basis of the results of surface water, soil, and groundwater analysis, up to six test pits will be dug. The test pits will be used to provide detailed descriptions of source materials and bulk samples. This document sets forth the requirements and procedures to protect the personnel involved in this project. This document also contains the health and safety plan, quality assurance project plan, waste management plan, data management plan, implementation plan, and best management practices plan for this project as appendices

  6. Sampling and analysis plan for the Bear Creek Valley Boneyard/Burnyard Accelerated Action Project, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-03-01

    In the Bear Creek Valley Watershed Remedial Investigation, the Boneyard/Burnyard was identified as the source of the largest releases of uranium into groundwater and surface water in Bear Creek Valley. The proposed action for remediation of this site is selective excavation and removal of source material and capping of the remainder of the site. The schedule for this action has been accelerated so that this is the first remedial action planned to be implemented in the Bear Creek Valley Record of Decision. Additional data needs to support design of the remedial action were identified at a data quality objectives meeting held for this project. Sampling at the Boneyard/Burnyard will be conducted through the use of a phased approach. Initial or primary samples will be used to make in-the-field decisions about where to locate follow-up or secondary samples. On the basis of the results of surface water, soil, and groundwater analysis, up to six test pits will be dug. The test pits will be used to provide detailed descriptions of source materials and bulk samples. This document sets forth the requirements and procedures to protect the personnel involved in this project. This document also contains the health and safety plan, quality assurance project plan, waste management plan, data management plan, implementation plan, and best management practices plan for this project as appendices.

  7. Particle-accelerator decommissioning

    International Nuclear Information System (INIS)

    Generic considerations involved in decommissioning particle accelerators are examined. There are presently several hundred accelerators operating in the United States that can produce material containing nonnegligible residual radioactivity. Residual radioactivity after final shutdown is generally short-lived induced activity and is localized in hot spots around the beam line. The decommissioning options addressed are mothballing, entombment, dismantlement with interim storage, and dismantlement with disposal. The recycle of components or entire accelerators following dismantlement is a definite possibility and has occurred in the past. Accelerator components can be recycled either immediately at accelerator shutdown or following a period of storage, depending on the nature of induced activation. Considerations of cost, radioactive waste, and radiological health are presented for four prototypic accelerators. Prototypes considered range from small accelerators having minimal amounts of radioactive mmaterial to a very large accelerator having massive components containing nonnegligible amounts of induced activation. Archival information on past decommissionings is presented, and recommendations concerning regulations and accelerator design that will aid in the decommissioning of an accelerator are given

  8. Particle-accelerator decommissioning

    Energy Technology Data Exchange (ETDEWEB)

    Opelka, J.H.; Mundis, R.L.; Marmer, G.J.; Peterson, J.M.; Siskind, B.; Kikta, M.J.

    1979-12-01

    Generic considerations involved in decommissioning particle accelerators are examined. There are presently several hundred accelerators operating in the United States that can produce material containing nonnegligible residual radioactivity. Residual radioactivity after final shutdown is generally short-lived induced activity and is localized in hot spots around the beam line. The decommissioning options addressed are mothballing, entombment, dismantlement with interim storage, and dismantlement with disposal. The recycle of components or entire accelerators following dismantlement is a definite possibility and has occurred in the past. Accelerator components can be recycled either immediately at accelerator shutdown or following a period of storage, depending on the nature of induced activation. Considerations of cost, radioactive waste, and radiological health are presented for four prototypic accelerators. Prototypes considered range from small accelerators having minimal amounts of radioactive mmaterial to a very large accelerator having massive components containing nonnegligible amounts of induced activation. Archival information on past decommissionings is presented, and recommendations concerning regulations and accelerator design that will aid in the decommissioning of an accelerator are given.

  9. An introduction to acceleration mechanisms

    International Nuclear Information System (INIS)

    This paper discusses the acceleration of charged particles by electromagnetic fields, i.e., by fields that are produced by the motion of other charged particles driven by some power source. The mechanisms that are discussed include: Ponderamotive Forces, Acceleration, Plasma Beat Wave Acceleration, Inverse Free Electron Laser Acceleration, Inverse Cerenkov Acceleration, Gravity Acceleration, 2D Linac Acceleration and Conventional Iris Loaded Linac Structure Acceleration

  10. Dirichlet Analysis Method for the Accelerated Storage Test of Electronic Machine%电子整机加速贮存试验的Dirichlet分析方法

    Institute of Scientific and Technical Information of China (English)

    周秀峰; 姚军; 张俊

    2012-01-01

    System electronic machine level product has a complex structure and with many failure mechanisms, the method of using accelerated model to analysis the storage life and reliability is not correct. This paper presents a method based on the sequence Dirichlet distribution model. According to the acceleration model, electronic equipment experiences multiple-type, multiple-level environmental stresses, this model assumes that the failure rate is of exponential distribution at each stress level. Through priori information and the modified accelerated storage model based on the reaction theory, the priori message of failure rate is obtained. Then a multi-variable sequence Dirichlet distribution is applied to describe the probability density of priori failure rate. The parameters are calculated and the physical meaning is clearly stated. By analyzing the constant-stress experiment data, the likelihood function is generated. The Gibbs rejection sampling method is used to solve the posteriori inference problem and get the posterior modified message. A case study is then performed using this method. The sampling process and the quantile values of the failure rate are presented as a result of the case study. Through comparing the priori and posteriori reliability variation trend in the normal state, the effectiveness of this method is shown. Thus a new method of life prediction and evaluation for electronic equipment is developed.%针对电子整机系统结构复杂,失效机理众多.无法利用传统的加速模型外推对其寿命和可靠性特征进行分析的问题,提出一种基于顺序Dirichlet分布的分析模型,利用多应力、多水平的环境应力,对每一阶段上的失效率建立指数分布模型.通过先验信息和基于反应论的修正加速模型,给出各应力水平上的失效率先验信息,利用多变量顺序Dirichlet分布描述先验失效率概率密度函数,并根据先验信息对Dirichlet分布参数进行辨识设计和对

  11. Accelerated Aging in Electrolytic Capacitors for Prognostics

    Data.gov (United States)

    National Aeronautics and Space Administration — The focus of this work is the analysis of different degradation phenomena based on thermal overstress and electrical overstress accelerated aging systems and the...

  12. Accelerator reliability workshop

    Energy Technology Data Exchange (ETDEWEB)

    Hardy, L.; Duru, Ph.; Koch, J.M.; Revol, J.L.; Van Vaerenbergh, P.; Volpe, A.M.; Clugnet, K.; Dely, A.; Goodhew, D

    2002-07-01

    About 80 experts attended this workshop, which brought together all accelerator communities: accelerator driven systems, X-ray sources, medical and industrial accelerators, spallation sources projects (American and European), nuclear physics, etc. With newly proposed accelerator applications such as nuclear waste transmutation, replacement of nuclear power plants and others. Reliability has now become a number one priority for accelerator designers. Every part of an accelerator facility from cryogenic systems to data storage via RF systems are concerned by reliability. This aspect is now taken into account in the design/budget phase, especially for projects whose goal is to reach no more than 10 interruptions per year. This document gathers the slides but not the proceedings of the workshop.

  13. Accelerator and radiation physics

    CERN Document Server

    Basu, Samita; Nandy, Maitreyee

    2013-01-01

    "Accelerator and radiation physics" encompasses radiation shielding design and strategies for hadron therapy accelerators, neutron facilities and laser based accelerators. A fascinating article describes detailed transport theory and its application to radiation transport. Detailed information on planning and design of a very high energy proton accelerator can be obtained from the article on radiological safety of J-PARC. Besides safety for proton accelerators, the book provides information on radiological safety issues for electron synchrotron and prevention and preparedness for radiological emergencies. Different methods for neutron dosimetry including LET based monitoring, time of flight spectrometry, track detectors are documented alongwith newly measured experimental data on radiation interaction with dyes, polymers, bones and other materials. Design of deuteron accelerator, shielding in beam line hutches in synchrotron and 14 MeV neutron generator, various radiation detection methods, their characteriza...

  14. Leaky Fermi accelerators

    CERN Document Server

    Shah, Kushal; Rom-Kedar, Vered; Turaev, Dmitry

    2015-01-01

    A Fermi accelerator is a billiard with oscillating walls. A leaky accelerator interacts with an environment of an ideal gas at equilibrium by exchange of particles through a small hole on its boundary. Such interaction may heat the gas: we estimate the net energy flow through the hole under the assumption that the particles inside the billiard do not collide with each other and remain in the accelerator for sufficiently long time. The heat production is found to depend strongly on the type of the Fermi accelerator. An ergodic accelerator, i.e. one which has a single ergodic component, produces a weaker energy flow than a multi-component accelerator. Specifically, in the ergodic case the energy gain is independent of the hole size, whereas in the multi-component case the energy flow may be significantly increased by shrinking the hole size.

  15. Nuclear physics accelerator facilities

    International Nuclear Information System (INIS)

    This paper describes many of the nuclear physics heavy-ion accelerator facilities in the US and the research programs being conducted. The accelerators described are: Argonne National Laboratory--ATLAS; Brookhaven National Laboratory--Tandem/AGS Heavy Ion Facility; Brookhaven National Laboratory--Relativistic Heavy Ion Collider (RHIC) (Proposed); Continuous Electron Beam Accelerator Facility; Lawrence Berkeley Laboratory--Bevalac; Lawrence Berkeley Laboratory--88-Inch Cyclotron; Los Alamos National Laboratory--Clinton P. Anderson Meson Physics Facility (LAMPF); Massachusetts Institute of Technology--Bates Linear Accelerator Center; Oak Ridge National Laboratory--Holifield Heavy Ion Research Facility; Oak Ridge National Laboratory--Oak Ridge Electron Linear Accelerator; Stanford Linear Accelerator Center--Nuclear Physics Injector; Texas AandM University--Texas AandM Cyclotron; Triangle Universities Nuclear Laboratory (TUNL); University of Washington--Tandem/Superconducting Booster; and Yale University--Tandem Van de Graaff

  16. Accelerator reliability workshop

    International Nuclear Information System (INIS)

    About 80 experts attended this workshop, which brought together all accelerator communities: accelerator driven systems, X-ray sources, medical and industrial accelerators, spallation sources projects (American and European), nuclear physics, etc. With newly proposed accelerator applications such as nuclear waste transmutation, replacement of nuclear power plants and others. Reliability has now become a number one priority for accelerator designers. Every part of an accelerator facility from cryogenic systems to data storage via RF systems are concerned by reliability. This aspect is now taken into account in the design/budget phase, especially for projects whose goal is to reach no more than 10 interruptions per year. This document gathers the slides but not the proceedings of the workshop

  17. Status of the MALT tandem electrostatic accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Matsuzaki, Hiroyuki; Kobayashi, Koichi; Nakano, Chuichiro; Sunohara, Yoko; Yamashita, Hiroshi; Makita, Hajime; Horiuchi, Kazuho [Tokyo Univ. (Japan)

    2001-02-01

    Seven years have passed since the start of MALT (Micro Analysis Laboratory, Tandem accelerator). An increasing emphasis has been placed, among others, on the accelerator mass spectroscopy (AMS), and also on proton-induced X-ray emission analysis (PIXE). The present paper describes major recent modifications of the system. A cesium sputter ion source dedicated to carbon 14 AMS was manufactured. The contamination of a source plasma chamber and electrodes decreases markedly, but still insufficient. As is increased ion currents injected to the accelerator, the electric field near the beam inlet section may be distorted, and thus deteriorate the beam transmission. (M. Tanaka)

  18. High Gradient Accelerator Research

    Energy Technology Data Exchange (ETDEWEB)

    Temkin, Richard [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States). Dept. of Physics. Plasma Science and Fusion Center

    2016-07-12

    The goal of the MIT program of research on high gradient acceleration is the development of advanced acceleration concepts that lead to a practical and affordable next generation linear collider at the TeV energy level. Other applications, which are more near-term, include accelerators for materials processing; medicine; defense; mining; security; and inspection. The specific goals of the MIT program are: • Pioneering theoretical research on advanced structures for high gradient acceleration, including photonic structures and metamaterial structures; evaluation of the wakefields in these advanced structures • Experimental research to demonstrate the properties of advanced structures both in low-power microwave cold test and high-power, high-gradient test at megawatt power levels • Experimental research on microwave breakdown at high gradient including studies of breakdown phenomena induced by RF electric fields and RF magnetic fields; development of new diagnostics of the breakdown process • Theoretical research on the physics and engineering features of RF vacuum breakdown • Maintaining and improving the Haimson / MIT 17 GHz accelerator, the highest frequency operational accelerator in the world, a unique facility for accelerator research • Providing the Haimson / MIT 17 GHz accelerator facility as a facility for outside users • Active participation in the US DOE program of High Gradient Collaboration, including joint work with SLAC and with Los Alamos National Laboratory; participation of MIT students in research at the national laboratories • Training the next generation of Ph. D. students in the field of accelerator physics.

  19. High Gradient Accelerator Research

    Energy Technology Data Exchange (ETDEWEB)

    Temkin, Richard [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States). Dept. of Physics. Plasma Science and Fusion Center

    2016-07-12

    The goal of the MIT program of research on high gradient acceleration is the development of advanced acceleration concepts that lead to a practical and affordable next generation linear collider at the TeV energy level. Other applications, which are more near-term, include accelerators for materials processing; medicine; defense; mining; security; and inspection. The specific goals of the MIT program are: • Pioneering theoretical research on advanced structures for high gradient acceleration, including photonic structures and metamaterial structures; evaluation of the wakefields in these advanced structures • Experimental research to demonstrate the properties of advanced structures both in low power microwave cold test and high power, high gradient test at megawatt power levels • Experimental research on microwave breakdown at high gradient including studies of breakdown phenomena induced by RF electric fields and RF magnetic fields; development of new diagnostics of the breakdown process • Theoretical research on the physics and engineering features of RF vacuum breakdown • Maintaining and improving the Haimson / MIT 17 GHz accelerator, the highest frequency operational accelerator in the world, a unique facility for accelerator research • Providing the Haimson / MIT 17 GHz accelerator facility as a facility for outside users • Active participation in the US DOE program of High Gradient Collaboration, including joint work with SLAC and with Los Alamos National Laboratory; participation of MIT students in research at the national laboratories • Training the next generation of Ph. D. students in the field of accelerator physics.

  20. An analysis of airspeed, altitude, and acceleration data obtained from a twin-engine transport airplane operated over a feeder-line route in the Rocky Mountains

    Science.gov (United States)

    Copp, Martin R; Fetner, Mary W

    1956-01-01

    Time-history data of airspeed, altitude, and acceleration obtained with the NACA VGH recorder from a twin-engine airplane operated by a regional feeder airline in the Rocky Mountains are evaluated to determine the magnitude and frequency of occurrence of gusts and gust accelerations and the operating airspeeds and altitudes. The results obtained are compared with the results previously obtained from a representative short-haul and long-haul operation.

  1. Accelerating Around an Unbanked Curve

    Science.gov (United States)

    Mungan, Carl E.

    2006-02-01

    The December 2004 issue of TPT presented a problem concerning how a car should accelerate around an unbanked curve of constant radius r starting from rest if it is to avoid skidding. Interestingly enough, two solutions were proffered by readers.2 The purpose of this note is to compare and contrast the two approaches. Further experimental investigation of various turning strategies using a remote-controlled car and overhead video analysis could make for an interesting student project.

  2. Accelerator Modeling with MATLAB Accelerator Toolbox

    International Nuclear Information System (INIS)

    This paper introduces Accelerator Toolbox (AT)--a collection of tools to model storage rings and beam transport lines in the MATLAB environment. The objective is to illustrate the flexibility and efficiency of the AT-MATLAB framework. The paper discusses three examples of problems that are analyzed frequently in connection with ring-based synchrotron light sources

  3. Repair of overheating linear accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Barkley, Walter; Baldwin, William; Bennett, Gloria; Bitteker, Leo; Borden, Michael; Casados, Jeff; Fitzgerald, Daniel; Gorman, Fred; Johnson, Kenneth; Kurennoy, Sergey; Martinez, Alberto; O’Hara, James; Perez, Edward; Roller, Brandon; Rybarcyk, Lawrence; Stark, Peter; Stockton, Jerry

    2004-01-01

    Los Alamos Neutron Science Center (LANSCE) is a proton accelerator that produces high energy particle beams for experiments. These beams include neutrons and protons for diverse uses including radiography, isotope production, small feature study, lattice vibrations and material science. The Drift Tube Linear Accelerator (DTL) is the first portion of a half mile long linear section of accelerator that raises the beam energy from 750 keV to 100 MeV. In its 31st year of operation (2003), the DTL experienced serious issues. The first problem was the inability to maintain resonant frequency at full power. The second problem was increased occurrences of over-temperature failure of cooling hoses. These shortcomings led to an investigation during the 2003 yearly preventative maintenance shutdown that showed evidence of excessive heating: discolored interior tank walls and coper oxide deposition in the cooling circuits. Since overheating was suspected to be caused by compromised heat transfer, improving that was the focus of the repair effort. Investigations revealed copper oxide flow inhibition and iron oxide scale build up. Acid cleaning was implemented with careful attention to protection of the base metal, selection of components to clean and minimization of exposure times. The effort has been very successful in bringing the accelerator through a complete eight month run cycle allowing an incredible array of scientific experiments to be completed this year (2003-2004). This paper will describe the systems, investigation analysis, repair, return to production and conclusion.

  4. Cache-based memory copy hardware accelerator for multicore systems

    NARCIS (Netherlands)

    Duarte, F.; Wong, S.

    2010-01-01

    In this paper, we present a new architecture of the cache-based memory copy hardware accelerator in a multicore system supporting message passing. The accelerator is able to accelerate memory data movements, in particular memory copies. We perform an analytical analysis based on open-queuing theory

  5. Dose volume histogram analysis of normal structures associated with accelerated partial breast irradiation delivered by high dose rate brachytherapy and comparison with whole breast external beam radiotherapy fields

    Directory of Open Access Journals (Sweden)

    Mutyala Subhakar

    2008-11-01

    Full Text Available Abstract Purpose To assess the radiation dose delivered to the heart and ipsilateral lung during accelerated partial breast brachytherapy using a MammoSite™ applicator and compare to those produced by whole breast external beam radiotherapy (WBRT. Materials and methods Dosimetric analysis was conducted on patients receiving MammoSite breast brachytherapy following conservative surgery for invasive ductal carcinoma. Cardiac dose was evaluated for patients with left breast tumors with a CT scan encompassing the entire heart. Lung dose was evaluated for patients in whom the entire lung was scanned. The prescription dose of 3400 cGy was 1 cm from the balloon surface. MammoSite dosimetry was compared to simulated WBRT fields with and without radiobiological correction for the effects of dose and fractionation. Dose parameters such as the volume of the structure receiving 10 Gy or more (V10 and the dose received by 20 cc of the structure (D20, were calculated as well as the maximum and mean doses received. Results Fifteen patients were studied, five had complete lung data and six had left-sided tumors with complete cardiac data. Ipsilateral lung volumes ranged from 925–1380 cc. Cardiac volumes ranged from 337–551 cc. MammoSite resulted in a significantly lower percentage lung V30 and lung and cardiac V20 than the WBRT fields, with and without radiobiological correction. Conclusion This study gives low values for incidental radiation received by the heart and ipsilateral lung using the MammoSite applicator. The volume of heart and lung irradiated to clinically significant levels was significantly lower with the MammoSite applicator than using simulated WBRT fields of the same CT data sets. Trial registration Dana Farber Trial Registry number 03-179

  6. Use of combination of accelerator-based ion-beam analysis techniques to the investigation of the corrosion behavior of CoCrMo alloy

    International Nuclear Information System (INIS)

    Highlights: •Effect of plasma nitriding-oxidizing on the corrosion and mechanical properties of CoCrMo alloy. •The double treatment (nitriding+oxidizing) led to higher improvement. •This effect is attributed to the presence of a stable nitride layer. -- Abstract: Nuclear Reaction Analysis – NRA in combination with d-RBS (Ed: 1.35 MeV) was applied in order to investigate the corrosion behavior of CoCrMo alloy. The corrosion resistance of the alloy was compared to that of modified CoCrMo samples by several techniques as plasma nitriding and oxidizing at moderate temperature (∼400 °C). Electrochemical techniques in simulated body fluid 0.9% NaCl (37 °C) were applied in order to accelerate the corrosion process. The nitrogen depth distribution before and after the corrosion was determined using the 14N(d,α)12C and the 14N(d,p)15N nuclear reactions whereas the oxygen by the 16O(d,p)17O. The surface morphology and microstructure was investigated using microscopy techniques. It was found that surface treatments produce thick nitrided layers (5–6 μm) consisting of a supersaturated nitrogen solution (nitrogen concentration is ∼30 at.%) in the matrix (expanded phase γN) and a thin oxygen solution (0.3 μm). The samples subjected to plasma nitridation and oxidation exhibited the lowest deterioration and better resistance to corrosion compared to the single nitrided or single oxidized and the untreated material. This could be attributed to the modified surface region with the high nitrogen content and the presence of oxygen

  7. Use of combination of accelerator-based ion-beam analysis techniques to the investigation of the corrosion behavior of CoCrMo alloy

    Energy Technology Data Exchange (ETDEWEB)

    Noli, F., E-mail: noli@chem.auth.gr [Department of Chemistry, Aristotle University, GR-54124 Thessaloniki (Greece); Misaelides, P. [Department of Chemistry, Aristotle University, GR-54124 Thessaloniki (Greece); Lagoyannis, A. [Tandem Accelerator Laboratory, Nuclear Physics Institute, NCSR Demokritos, GR-15310 Aghia Paraskevi, Attiki (Greece); Pichon, L. [Institut P’ UPR 3346 Université de Poitiers, CNRS F-86960 Futuroscope, Cedex (France); Ozturk, O. [Department of Physics, Izmir Institute of Technology, Gulbahce-Urla, 35430 Izmir (Turkey)

    2014-07-15

    Highlights: •Effect of plasma nitriding-oxidizing on the corrosion and mechanical properties of CoCrMo alloy. •The double treatment (nitriding+oxidizing) led to higher improvement. •This effect is attributed to the presence of a stable nitride layer. -- Abstract: Nuclear Reaction Analysis – NRA in combination with d-RBS (E{sub d}: 1.35 MeV) was applied in order to investigate the corrosion behavior of CoCrMo alloy. The corrosion resistance of the alloy was compared to that of modified CoCrMo samples by several techniques as plasma nitriding and oxidizing at moderate temperature (∼400 °C). Electrochemical techniques in simulated body fluid 0.9% NaCl (37 °C) were applied in order to accelerate the corrosion process. The nitrogen depth distribution before and after the corrosion was determined using the {sup 14}N(d,α){sup 12}C and the {sup 14}N(d,p){sup 15}N nuclear reactions whereas the oxygen by the {sup 16}O(d,p){sup 17}O. The surface morphology and microstructure was investigated using microscopy techniques. It was found that surface treatments produce thick nitrided layers (5–6 μm) consisting of a supersaturated nitrogen solution (nitrogen concentration is ∼30 at.%) in the matrix (expanded phase γ{sub N}) and a thin oxygen solution (0.3 μm). The samples subjected to plasma nitridation and oxidation exhibited the lowest deterioration and better resistance to corrosion compared to the single nitrided or single oxidized and the untreated material. This could be attributed to the modified surface region with the high nitrogen content and the presence of oxygen.

  8. Time-Dependent Neutronic Analysis of a Power-Flattened Gas Cooled Accelerator Driven System Fuelled with Thorium, Uranium, Plutonium, and Curium Dioxides TRISO Particles

    Directory of Open Access Journals (Sweden)

    Gizem Bakır

    2016-01-01

    Full Text Available This study presents the power flattening and time-dependent neutronic analysis of a conceptual helium gas cooled Accelerator Driven System (ADS loaded with TRISO (tristructural-isotropic fuel particles. Target material is lead-bismuth eutectic (LBE. ThO2, UO2, PuO2, and CmO2 TRISO particles are used as fuel. PuO2 and CmO2 fuels are extracted from PWR-MOX spent fuel. Subcritical core is radially divided into 10 equidistant subzones in order to flatten the power produced in the core. Tens of thousands of these TRISO fuel particles are embedded in the carbon matrix fuel pebbles as five different cases. The high-energy Monte Carlo code MCNPX 2.7 with the LA150 library is used for the neutronic calculations. Time-dependent burnup calculations are carried out for thermal fission power (Pth of 1000 MW using the BURN card. The energy gain of the ADS is in the range of 99.98–148.64 at the beginning of a cycle. Furthermore, the peak-to-average fission power density ratio is obtained between 1.021 and 1.029 at the beginning of the cycle. These ratios show a good quasi-uniform power density for each case. Furthermore, up to 155.1 g 233U and 103.6 g 239Pu per day can be produced. The considered system has a high neutronic capability in terms of energy multiplication, fissile breeding, and spent fuel transmutation with thorium utilization.

  9. Racetrack linear accelerators

    International Nuclear Information System (INIS)

    An improved recirculating electron beam linear accelerator of the racetrack type is described. The system comprises a beam path of four straight legs with four Pretzel bending magnets at the end of each leg to direct the beam into the next leg of the beam path. At least one of the beam path legs includes a linear accelerator. (UK)

  10. COLLECTIVE-FIELD ACCELERATION

    Energy Technology Data Exchange (ETDEWEB)

    Sessler, Andrew M.

    1969-07-04

    Diverse methods proposed for the acceleration of particles by means of collective fields are reviewed. A survey is made of the various currently active experimental programs devoted to investigating collective acceleration, and the present status of the research is briefly noted.

  11. KEK digital accelerator

    Science.gov (United States)

    Iwashita, T.; Adachi, T.; Takayama, K.; Leo, K. W.; Arai, T.; Arakida, Y.; Hashimoto, M.; Kadokura, E.; Kawai, M.; Kawakubo, T.; Kubo, Tomio; Koyama, K.; Nakanishi, H.; Okazaki, K.; Okamura, K.; Someya, H.; Takagi, A.; Tokuchi, A.; Wake, M.

    2011-07-01

    The High Energy Accelerator Research Organization KEK digital accelerator (KEK-DA) is a renovation of the KEK 500 MeV booster proton synchrotron, which was shut down in 2006. The existing 40 MeV drift tube linac and rf cavities have been replaced by an electron cyclotron resonance (ECR) ion source embedded in a 200 kV high-voltage terminal and induction acceleration cells, respectively. A DA is, in principle, capable of accelerating any species of ion in all possible charge states. The KEK-DA is characterized by specific accelerator components such as a permanent magnet X-band ECR ion source, a low-energy transport line, an electrostatic injection kicker, an extraction septum magnet operated in air, combined-function main magnets, and an induction acceleration system. The induction acceleration method, integrating modern pulse power technology and state-of-art digital control, is crucial for the rapid-cycle KEK-DA. The key issues of beam dynamics associated with low-energy injection of heavy ions are beam loss caused by electron capture and stripping as results of the interaction with residual gas molecules and the closed orbit distortion resulting from relatively high remanent fields in the bending magnets. Attractive applications of this accelerator in materials and biological sciences are discussed.

  12. Asia honours accelerator physicists

    CERN Multimedia

    2010-01-01

    "Steve Meyers of Cern and Jie Wei of Beijing's Tsinghua University are the first recipients of a new prize for particle physics. The pair were honoured for their contributions to numerous particle-accelerator projects - including Cern's Large Hadron Collider - by the Asian Committee for Future Accelerators (ACFA)..." (1 paragraph)

  13. Accelerators for energy production

    International Nuclear Information System (INIS)

    A tremendous progress of accelerators for these several decades, has been motivated mainly by the research on subnuclear physics. The culmination in high energy accelerators might be SSC, 20 TeV collider in USA, probably the ultimate accelerator being built with the conventional principle. The technology cultivated and integrated for the accelerator development, can now stably offer the high power beam which could be used for the energy problems. The Inertial Confinement Fusion (ICF) with high current, 10 kA and short pulse, 20 ns heavy ion beam (HIB) of mass number ∼200, would be the most promising application of accelerators for energy production. In this scenario, the fuel containing D-T mixture, will be compressed to the high temperature, ∼10 keV and to the high density state, ∼1000 times the solid density with the pressure of ablative plasma or thermal X ray produced by bombarding of high power HIB. The efficiency, beam power/electric power for accelerator, and the repetition rate of HIB accelerators could be most suitable for the energy production. In the present paper, the outline of HIB ICF (HIF) is presented emphasizing the key issues of high current heavy ion accelerator system. (author)

  14. Accelerators Beyond The Tevatron?

    Energy Technology Data Exchange (ETDEWEB)

    Lach, Joseph; /Fermilab

    2010-07-01

    Following the successful operation of the Fermilab superconducting accelerator three new higher energy accelerators were planned. They were the UNK in the Soviet Union, the LHC in Europe, and the SSC in the United States. All were expected to start producing physics about 1995. They did not. Why?

  15. Accelerated large-scale multiple sequence alignment

    Directory of Open Access Journals (Sweden)

    Lloyd Scott

    2011-12-01

    Full Text Available Abstract Background Multiple sequence alignment (MSA is a fundamental analysis method used in bioinformatics and many comparative genomic applications. Prior MSA acceleration attempts with reconfigurable computing have only addressed the first stage of progressive alignment and consequently exhibit performance limitations according to Amdahl's Law. This work is the first known to accelerate the third stage of progressive alignment on reconfigurable hardware. Results We reduce subgroups of aligned sequences into discrete profiles before they are pairwise aligned on the accelerator. Using an FPGA accelerator, an overall speedup of up to 150 has been demonstrated on a large data set when compared to a 2.4 GHz Core2 processor. Conclusions Our parallel algorithm and architecture accelerates large-scale MSA with reconfigurable computing and allows researchers to solve the larger problems that confront biologists today. Program source is available from http://dna.cs.byu.edu/msa/.

  16. Maximal Acceleration Is Nonrotating

    CERN Document Server

    Page, D N

    1998-01-01

    In a stationary axisymmetric spacetime, the angular velocity of a stationary observer that Fermi-Walker transports its acceleration vector is also the angular velocity that locally extremizes the magnitude of the acceleration of such an observer, and conversely if the spacetime is also symmetric under reversing both t and phi together. Thus a congruence of Nonrotating Acceleration Worldlines (NAW) is equivalent to a Stationary Congruence Accelerating Locally Extremely (SCALE). These congruences are defined completely locally, unlike the case of Zero Angular Momentum Observers (ZAMOs), which requires knowledge around a symmetry axis. The SCALE subcase of a Stationary Congruence Accelerating Maximally (SCAM) is made up of stationary worldlines that may be considered to be locally most nearly at rest in a stationary axisymmetric gravitational field. Formulas for the angular velocity and other properties of the SCALEs are given explicitly on a generalization of an equatorial plane, infinitesimally near a symmetry...

  17. Linear induction accelerator

    International Nuclear Information System (INIS)

    This paper examines a new layout for the injector and accelerating sectins of a linear induction accelerator. The sections are combined in a single housing: an induction system with a current-pulse generator based on double strip shaping lines laid over ferromagnetic cores; a multichannel spark discharger with forced current division among channels; and a system for core demagnetization and electron-beam formation and transport. The results of formation of an electron beam in the injector system and its acceleration in the first accelerating section of the accelerator for injection of beams with energies of 0.2-0.4 MeV, currents of 1-2 kA, and pulse durations of 60 nsec are given

  18. Collinear wake field acceleration

    International Nuclear Information System (INIS)

    In the Voss-Weiland scheme of wake field acceleration a high current, ring-shaped driving bunch is used to accelerate a low current beam following along on axis. In such a structure, the transformer ratio, i.e., the ratio of maximum voltage that can be gained by the on-axis beam and the voltage lost by the driving beam, can be large. In contrast, it has been observed that for an arrangement in which driving and driven bunches follow the same path, and where the current distribution of both bunches is gaussian, the transformer ratio is not normally greater than two. This paper explores some of the possibilities and limitations of a collinear acceleration scheme. In addition to its application to wake field acceleration in structures, this study is also of interest for the understanding of the plasma wake field accelerator. 11 refs., 4 figs

  19. Accelerators, Beams And Physical Review Special Topics - Accelerators And Beams

    Energy Technology Data Exchange (ETDEWEB)

    Siemann, R.H.; /SLAC

    2011-10-24

    Accelerator science and technology have evolved as accelerators became larger and important to a broad range of science. Physical Review Special Topics - Accelerators and Beams was established to serve the accelerator community as a timely, widely circulated, international journal covering the full breadth of accelerators and beams. The history of the journal and the innovations associated with it are reviewed.

  20. Boundary-projection acceleration: A new approach to synthetic acceleration of transport calculations

    Energy Technology Data Exchange (ETDEWEB)

    Adams, M.L.; Martin, W.R.

    1987-01-01

    We present a new class of synthetic acceleration methods which can be applied to transport calculations regardless of geometry, discretization scheme, or mesh shape. Unlike other synthetic acceleration methods which base their acceleration on P1 equations, these methods use acceleration equations obtained by projecting the transport solution onto a coarse angular mesh only on cell boundaries. We demonstrate, via Fourier analysis of a simple model problem as well as numerical calculations of various problems, that the simplest of these methods are unconditionally stable with spectral radius less than or equal toc/3 (c being the scattering ratio), for several different discretization schemes in slab geometry. 28 refs., 4 figs., 3 tabs.

  1. A new procedure combining GC-MS with accelerated solvent extraction for the analysis of phthalic acid esters in contaminated soils

    Institute of Scientific and Technical Information of China (English)

    Tingting MA; Ying TENG; Peter CHRISTIE; Yongming LUO; Yongshan CHEN; Mao YE

    2013-01-01

    An optimized procedure based on gas chromatography-mass spectrometry (GC-MS) combined with accelerated solvent extraction (ASE) is developed for the analysis of six phthalic acid esters (PAEs), which are priority soil pollutants nominated by United States Environmental Protection Agency (USEPA). Quantification of PAEs in soil employs ultrasonic extraction (UE) (USEPA 3550) and ASE (USEPA 3545), followed by clean up procedures involving three different chromatography columns and two combined elution methods. GC-MS conditions under selected ion monitoring (SIM) mode are described and quality assurance and quality control (QA/ QC) criteria with high accuracy and sensitivity for target analytes were achieved. Method reliability is assured with the use of an isotopically labeled PAE, di-n-butyl phthalate-d4 (DnBP-D4), as a surrogate, and benzyl benzoate (BB) as an internal standard, and with the analysis of certified reference materials (CRM). QA/QC for the developed procedure was tested in four PAE-spiked soils and one PAE-contaminated soil. The four spiked soils were originated from typical Chinese agricultural fields and the contaminated soil was obtained from an electronic waste dismantling area. Instrument detection limits (IDLs) for the six PAEs ranged 0.10-0.31 μg·L-1 and method detection limits (MDLs) of the four spiked soils varied from a range of 20-70 μg· kg -1 to a range of 90-290 μg· kg-1. Lineal-iVy of response between 20 μg· L-1 and 2mg.L~ was also established and the correlation coefficients (R) were a11〉0.998. Spiked soil matrix showed relative recovery rates between 75 and 120% for the six target compounds and about 93% for the surrogate substance. The developed procedure is anticipated to be highly applicable for field surveys of soil PAE pollution in China.

  2. Acceleration Statistics in Rotating and Sheared Turbulence

    Science.gov (United States)

    Jacobitz, Frank; Schneider, Kai; Bos, Wouter; Farge, Marie

    2012-11-01

    Acceleration statistics are of fundamental interest in turbulence ranging from theoretical questions to modeling of dispersion processes. Direct numerical simulations of sheared and rotating homogeneous turbulence are performed with different ratios of Coriolis parameter to shear rate. The statistics of Lagrangian and Eulerian acceleration are studied with a particular focus on the influence of the rotation ratio and also on the scale dependence of the statistics. The probability density functions (pdfs) of both Lagrangian and Eulerian acceleration show a strong and similar influence on the rotation ratio. The flatness further quantifies its influence and yields values close to three for strong rotation. For moderate and vanishing rotation, the flatness of the Eulerian acceleration is larger than that of the Lagrangian acceleration, contrary to previous results for isotropic turbulence. A wavelet-based scale-dependent analysis shows that the flatness of both Eulerian and Lagrangian acceleration increases as scale decreases. For strong rotation, the Eulerian acceleration is more intermittent than the Lagrangian acceleration, while the opposite result is obtained for moderate rotation.

  3. Power requirements for cosmic ray propagation models involving re-acceleration and a comment on second order Fermi acceleration theory

    CERN Document Server

    Thornbury, Andrew

    2014-01-01

    We derive an analytic expression for the power transferred from interstellar turbulence to the Galactic cosmic rays in propagation models which include re-acceleration. This is used to estimate the power required in such models and the relative importance of the primary acceleration as against re-acceleration. The analysis provides a formal mathematical justification for Fermi's heuristic account of second order acceleration in his classic 1949 paper.

  4. Epistatic interaction between BANK1 and BLK in rheumatoid arthritis: results from a large trans-ethnic meta-analysis

    OpenAIRE

    Emmanuelle Génin; Baptiste Coustet; Yannick Allanore; Ikue Ito; Maria Teruel; Arnaud Constantin; Thierry Schaeverbeke; Adeline Ruyssen-Witrand; Shigeto Tohma; Alain Cantagrel; Olivier Vittecoq; Thomas Barnetche; Xavier Le Loët; Patrice Fardellone; Hiroshi Furukawa

    2013-01-01

    BACKGROUND: BANK1 and BLK belong to the pleiotropic autoimmune genes; recently, epistasis between BANK1 and BLK was detected in systemic lupus erythematosus. Although BLK has been reproducibly identified as a risk factor in rheumatoid arthritis (RA), reports are conflicting about the contribution of BANK1 to RA susceptibility. To ascertain the real impact of BANK1 on RA genetic susceptibility, we performed a large meta-analysis including our original data and tested for an epistatic interacti...

  5. Epistasis analysis of 16S rRNA ram mutations helps define the conformational dynamics of the ribosome that influence decoding.

    Science.gov (United States)

    Ying, Lanqing; Fredrick, Kurt

    2016-04-01

    The ribosome actively participates in decoding, with a tRNA-dependent rearrangement of the 30S A site playing a key role. Ribosomal ambiguity (ram) mutations have mapped not only to the A site but also to the h12/S4/S5 region and intersubunit bridge B8, implicating other conformational changes such as 30S shoulder rotation and B8 disruption in the mechanism of decoding. Recent crystallographic data have revealed that mutation G299A in helix h12 allosterically promotes B8 disruption, raising the question of whether G299A and/or other ram mutations act mainly via B8. Here, we compared the effects of each of several ram mutations in the absence and presence of mutation h8Δ2, which effectively takes out bridge B8. The data obtained suggest that a subset of mutations including G299A act in part via B8 but predominantly through another mechanism. We also found that G299A in h12 and G347U in h14 each stabilize tRNA in the A site. Collectively, these data support a model in which rearrangement of the 30S A site, inward shoulder rotation, and bridge B8 disruption are loosely coupled events, all of which promote progression along the productive pathway toward peptide bond formation.

  6. Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1

    OpenAIRE

    Kirino, Yohei; Bertsias, George; Ishigatsubo, Yoshiaki; Mizuki, Nobuhisa; Tugal-Tutkun, Ilknur; Seyahi, Emire; Ozyazgan, Yilmaz; Sacli, F. Sevgi; Erer, Burak; Inoko, Hidetoshi; Emrence, Zeliha; Cakar, Atilla; Abaci, Neslihan; Ustek, Duran; Satorius, Colleen

    2013-01-01

    Patients with Behçet's disease (BD) suffer from episodic inflammation often affecting the orogenital mucosa, skin, and eyes. To discover new BD-susceptibility loci, we performed a genome-wide association study (GWAS) of 779,465 SNPs with imputed genotypes in 1,209 Turkish BD patients and 1,278 controls. We identified novel associations at CCR1, STAT4, and KLRC4. Additionally, two SNPs in ERAP1, encoding ERAP1 p.Asp575Asn and p.Arg725Gln, recessively conferred disease risk. These findings repl...

  7. 基于小波变换的侵彻加速度信号分析%Analysis of penetration acceleration signal based on wavelet transformation

    Institute of Scientific and Technical Information of China (English)

    王春常; 顾强; 安晓红

    2015-01-01

    In order to analyze the composition and frequency distribution of acceleration signal in the process of proj ectile pene-trating,this paper uses wavelet transform to decompose penetration acceleration signal to get the distribution of penetration ac-celeration signal in different frequency bands.Compared with the ideal acceleration signal curve and its characteristics,it can be concluded that the frequency range of the acceleration signal in the axis of the proj ectile and the vibration frequency range of the projectile are 31.25-62.5 kHz and 62.5-125 kHz,respectively.Finally,the penetration acceleration signal curve is obtained by Simulink.%为了分析弹体在侵彻过程中加速度信号的构成成分和频率分布范围,利用小波变换对侵彻加速性信号进行了分解,分解出侵彻加速度信号在不同频段内的分布情况。通过与理想情况下加速度信号曲线及加速度信号本身的信号特点进行对比,得出弹体在侵彻过程中,在轴线上加速度信号的频率范围和弹体振动频率范围分别为31.25-62.5 kHz和62.5-125 kHz,而后利用 Simulink获得侵彻加速度信号曲线。

  8. The miniature accelerator

    CERN Multimedia

    Antonella Del Rosso

    2015-01-01

    The image that most people have of CERN is of its enormous accelerators and their capacity to accelerate particles to extremely high energies. But thanks to some cutting-edge studies on beam dynamics and radiofrequency technology, along with innovative construction techniques, teams at CERN have now created the first module of a brand-new accelerator, which will be just 2 metres long. The potential uses of this miniature accelerator will include deployment in hospitals for the production of medical isotopes and the treatment of cancer. It’s a real David-and-Goliath story.   Serge Mathot, in charge of the construction of the "mini-RFQ", pictured with the first of the four modules that will make up the miniature accelerator. The miniature accelerator consists of a radiofrequency quadrupole (RFQ), a component found at the start of all proton accelerator chains around the world, from the smallest to the largest. The LHC is designed to produce very high-intensity beams ...

  9. Large electrostatic accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Jones, C.M.

    1984-01-01

    The increasing importance of energetic heavy ion beams in the study of atomic physics, nuclear physics, and materials science has partially or wholly motivated the construction of a new generation of large electrostatic accelerators designed to operate at terminal potentials of 20 MV or above. In this paper, the author briefly discusses the status of these new accelerators and also discusses several recent technological advances which may be expected to further improve their performance. The paper is divided into four parts: (1) a discussion of the motivation for the construction of large electrostatic accelerators, (2) a description and discussion of several large electrostatic accelerators which have been recently completed or are under construction, (3) a description of several recent innovations which may be expected to improve the performance of large electrostatic accelerators in the future, and (4) a description of an innovative new large electrostatic accelerator whose construction is scheduled to begin next year. Due to time and space constraints, discussion is restricted to consideration of only tandem accelerators.

  10. Accelerator programme at CAT

    International Nuclear Information System (INIS)

    The Accelerator Programme at the Centre for Advanced Technology (CAT), Indore, has very broad based concept under which all types of accelerators are to be taken up for design and fabrication. This centre will be housing a wide variety of accelerators to serve as a common facility for the universities, national laboratories in addition to laboratories under the Department of Atomic Energy. In the first phase of the programme, a series of electron accelerators are designed and fabricated. They are synchrotron radiation sources of 450 MeV (INDUS-I) and of 2 GeV (INDUS-II), microtron upto energy of 20 MeV, linear accelerator upto 20 MeV, and DC Accelerator for industrial irradiation upto 750 KeV and 20 KW. A proton accelerator of 300 MeV with 20 MeV linac injector is also designed. CAT is also developing a strong base for support technologies like ultra high vacuum, radio frequency and microwaves, DC pulsed and superconducting magnets, power supplies and controls etc. These technologies are very useful for other industrial applications also. To develop user groups to utilise INDUS-II synchrotron radiation source, a batch production of rotating Anode X-ray generators with power supplies has been initiated. So also, the sputter ion pumps, electron guns, turbo molecular pumps are brought into batch production. (author)

  11. Collective ion acceleration

    International Nuclear Information System (INIS)

    Progress achieved in the understanding and development of collective ion acceleration is presented. Extensive analytic and computational studies of slow cyclotron wave growth on an electron beam in a helix amplifier were performed. Research included precise determination of linear coupling between beam and helix, suppression of undesired transients and end effects, and two-dimensional simulations of wave growth in physically realizable systems. Electrostatic well depths produced exceed requirements for the Autoresonant Ion Acceleration feasibility experiment. Acceleration of test ions to modest energies in the troughs of such waves was also demonstrated. Smaller efforts were devoted to alternative acceleration mechanisms. Langmuir wave phase velocity in Converging Guide Acceleration was calculated as a function of the ratio of electron beam current to space-charge limiting current. A new collective acceleration approach, in which cyclotron wave phase velocity is varied by modulation of electron beam voltage, is proposed. Acceleration by traveling Virtual Cathode or Localized Pinch was considered, but appears less promising. In support of this research, fundamental investigations of beam propagation in evacuated waveguides, of nonneutral beam linear eigenmodes, and of beam stability were carried out. Several computer programs were developed or enhanced. Plans for future work are discussed

  12. Double (implicit and explicit) dependence of the electromagnetic field of an accelerated charge on time Mathematical and physical analysis of the problem

    CERN Document Server

    Chubykalo, A E; Chubykalo, Andrew E.; Vlaev, Stoyan J.

    1999-01-01

    We considered the electromagnetic field of a charge moving with a constant acceleration along an axis. We found that this field obtained from the Liénard-Wiechert potentials does not satisfy Maxwell equations if one considers exclusively a retarded interaction (i.e. pure implicit dependence this field on time). We show that if and only if one takes into account both retarded interaction and direct interaction (so called "action-at-a-distance") the field produced by an accelerated charge satisfies Maxwell equations.

  13. Accelerator Toolbox for MATLAB

    International Nuclear Information System (INIS)

    This paper introduces Accelerator Toolbox (AT)--a collection of tools to model particle accelerators and beam transport lines in the MATLAB environment. At SSRL, it has become the modeling code of choice for the ongoing design and future operation of the SPEAR 3 synchrotron light source. AT was designed to take advantage of power and simplicity of MATLAB--commercially developed environment for technical computing and visualization. Many examples in this paper illustrate the advantages of the AT approach and contrast it with existing accelerator code frameworks

  14. Hadron accelerators in medicine

    Energy Technology Data Exchange (ETDEWEB)

    Amaldi, U. [European Organization for Nuclear Research (CERN), Geneva (Switzerland). Accelerator School; Silari, M. [Consiglio Nazionale delle Ricerche, Milan (Italy)

    1996-12-31

    The application of hadron accelerators (protons and light ions) in cancer therapy is discussed. After a brief introduction on the rationale for the use of heavy charged particles in radiation therapy, a discussion is given on accelerator technology and beam delivery systems. Next, existing and planned facilities are briefly reviewed. The Italian Hadron-therapy Project is then described in some detail, with reference ro both the National Centre for Oncological Hadron-therapy and the design of different types of compact proton accelerators aimed at introducing proton therapy in a large umber of hospitals. (author) 28 refs.

  15. Entropic accelerating universe

    Energy Technology Data Exchange (ETDEWEB)

    Easson, Damien A., E-mail: easson@asu.ed [Institute for the Physics and Mathematics of the Universe, University of Tokyo, Kashiwa, Chiba 277-8568 (Japan); Department of Physics and School of Earth and Space Exploration and Beyond Center, Arizona State University, Phoenix, AZ 85287-1504 (United States); Kavli Institute for Theoretical Physics, University of California, Santa Barbara, CA 93106-4030 (United States); Frampton, Paul H., E-mail: frampton@physics.unc.ed [Institute for the Physics and Mathematics of the Universe, University of Tokyo, Kashiwa, Chiba 277-8568 (Japan); Department of Physics and Astronomy, University of North Carolina, Chapel Hill, NC 27599 (United States); Smoot, George F., E-mail: gfsmoot@lbl.go [Institute for the Physics and Mathematics of the Universe, University of Tokyo, Kashiwa, Chiba 277-8568 (Japan); Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, CA 94720 (United States); Physics Department, University of California, Berkeley, CA 94720 (United States); Institute for the Early Universe, Ewha Womans University and Advanced Academy, Seoul (Korea, Republic of); Chaire Blaise Pascale, Universite Paris Denis Diderot, Paris (France)

    2011-01-31

    To accommodate the observed accelerated expansion of the universe, one popular idea is to invoke a driving term in the Friedmann-Lemaitre equation of dark energy which must then comprise 70% of the present cosmological energy density. We propose an alternative interpretation which takes into account the entropy and temperature intrinsic to the horizon of the universe due to the information holographically stored there. Dark energy is thereby obviated and the acceleration is due to an entropic force naturally arising from the information storage on the horizon surface screen. We consider an additional quantitative approach inspired by surface terms in general relativity and show that this leads to the entropic accelerating universe.

  16. ACCELERATORS: School prizes

    International Nuclear Information System (INIS)

    Dedicated to its goal of encouraging scientists and students to work in the field of particle accelerators, the US Particle Accelerator School (operating since 1981) has switched to a new format. Starting this year, it will offer in alternate years basic accelerator physics plus advanced subjects in both university and symposium styles over four weeks. Expanding the school from two to four weeks gives additional flexibility, and undergraduate participation should be encouraged by university credits being offered for particular courses. In the intervening years, the school will organize six-day topical courses

  17. Auroral electron acceleration

    International Nuclear Information System (INIS)

    Two theories of auroral electron acceleration are discussed. Part 1 examines the currently widely held view that the acceleration is an ordered process in a quasi-static electric field. It is suggested that, although there are many factors seeming to support this theory, the major qualifications and uncertainties that have been identified combine to cast serious doubt over its validity. Part 2 is devoted to a relatively new interpretation in terms of stochastic acceleration in turbulent electric fields. This second theory, which appears to account readily for most known features of the electron distribution function, is considered to provide a more promising approach to this central question in magnetospheric plasma physics. (author)

  18. The particle accelerator

    International Nuclear Information System (INIS)

    As the Palais de la Decouverte (in Paris) is the sole scientific vulgarization establishment in the world to operate an actual particle accelerator able to provoke different types of nuclear reactions, the author recalls some historical aspects of the concerned department since the creation of the 'Radioactivity - Atom synthesis' department in 1937. He recalls the experiments which were then performed, the installation of the particle accelerator in 1964 and its renewal. He describes what's going on in this accelerator. He gives an overview of the difficulties faced after it has been decided to move it, of the works which had to be performed, and of radiation protection measures

  19. 摆角、摆长及周期数对测重力加速度的影响分析%Influence and Analysis of Pendulum Angle, Pendulum Length and Periodicity on the Acceleration of Gravity

    Institute of Scientific and Technical Information of China (English)

    翟凤瑞; 李宇赤; 易中周; 张黎黎; 王丹

    2011-01-01

    用单摆法测量重力加速度是普通物理实验中常用的方法,但在实验中,摆角、摆长和周期数常常对重力加速度的测量误差产生一定的影响.文章主要分析不同摆角、摆长及周期数三个条件对测重力加速度的影响,最终由处理分析结果可知,在普通物理实验室里,取摆角、摆长=47或55cm、周期数次,处理得到的重力加速度与本地的理论计算值很接近.%It is an ordinary method to measure acceleration of gravity with a pendulum in physical experiments.But in the experiment,the pendulum angle,pendulum length and periodicity often have some influences on measurement errors of acceleration of gravity.This paper mainly analyzes the influences of pendulum angle,pendulum length and periodicity on the acceleration of gravity.It can be seen from the processing and analysis results that the value of acceleration of gravity by experiments is very close to the local acceleration theoretical value when the swing angle is 3.8 degrees,pendulum length is 47 cm or 55 cm and periodicity is 37 times.

  20. A study of the ASR of an aggregate with high chert content by means of ultra-accelerated mortar bar test and pore fluid analysis

    NARCIS (Netherlands)

    Larbi, J.A.; Visser, J.H.M.

    2002-01-01

    Various studies have indicated that the use of some ultra-accelerated mortar bar expansion test methods for assessing the alkali-silica reactivity of concrete aggregates (particularly those using 1 M NaOH solution at 80 oC) can give rise to misleading results causing certain types of aggregates to b

  1. The connection between supernova remnants and the Galactic magnetic field: An analysis of quasi-parallel and quasi-perpendicular cosmic ray acceleration for the axisymmetric sample

    CERN Document Server

    West, J L; Ferrand, G

    2016-01-01

    The mechanism for acceleration of cosmic rays in supernova remnants (SNRs) is an outstanding question in the field. We model a sample of 32 axisymmetric SNRs using the quasi-perpendicular and quasi-parallel cosmic-ray-electron (CRE) acceleration cases. The axisymmetric sample is defined to include SNRs with a double-sided, bilateral morphology, and also those with a one-sided morphology where one limb is much brighter than the other. Using a coordinate transformation technique, we insert a bubble-like model SNR into a model of the Galactic magnetic field. Since radio emission of SNRs is dominated by synchrotron emission and since this emission depends on the magnetic field and CRE distribution, we are able to simulate the SNRs emission and compare this to data. We find that the quasi-perpendicular CRE acceleration case is much more consistent with the data than the quasi-parallel CRE acceleration case, with G327.6+14.6 (SN1006) being a notable exception. We propose that SN1006 may be a case where both quasi-p...

  2. SPS accelerating cavity

    CERN Multimedia

    1983-01-01

    See photo 8202397: View towards the downstream end of one of the SPS accelerating cavities (200 MHz, travelling wave structure). See 7603195 and 8011289 for more details, 7411032 for the travelling wave structure, and also 8104138.

  3. SPS accelerating cavity

    CERN Multimedia

    1983-01-01

    View towards the downstream end of one of the SPS accelerating cavities (200 MHz, travelling wave structure). See 7603195 and 8011289 for more details, 7411032 for the travelling wave structure, and also 8104138.

  4. Rejuvenating CERN's Accelerators

    CERN Multimedia

    2004-01-01

    In the coming years and especially in 2005, CERN's accelerators are going to receive an extensive renovation programme to ensure they will perform reliably and effectively when the LHC comes into service.

  5. Dimension Driven Accelerating Universe

    CERN Document Server

    Chatterjee, S

    2009-01-01

    The current acceleration of the universe leads us to investigate higher dimensional gravity theory, which is able to explain acceleration from a theoretical view point without the need of introducing dark energy by hand. We argue that the terms containing higher dimensional metric coefficients produce an extra negative pressure that apparently drives an acceleration of the 3D space, tempting us to suggest that the accelerating universe seems to act as a window to the existence of extra spatial dimensions. Interesting to point out that in this case our cosmology apparently mimics the well known quintessence scenario fuelled by a generalised Chaplygin-type of fluid where a smooth transition from a dust dominated model to a de Sitter like one takes place. Correspondence to models generated by a tachyonic form of matter is also briefly discussed.

  6. Revisiting Caianiello's Maximal Acceleration

    OpenAIRE

    Papini, G.

    2003-01-01

    A quantum mechanical limit on the speed of orthogonality evolution justifies the last remaining assumption in Caianiello's derivation of the maximal acceleration. The limit is perfectly compatible with the behaviour of superconductors of the first type.

  7. Joint International Accelerator School

    CERN Multimedia

    CERN Accelerator School

    2014-01-01

    The CERN and US Particle Accelerator Schools recently organised a Joint International Accelerator School on Beam Loss and Accelerator Protection, held at the Hyatt Regency Hotel, Newport Beach, California, USA from 5-14 November 2014. This Joint School was the 13th in a series of such schools, which started in 1985 and also involves the accelerator communities in Japan and Russia.   Photo courtesy of Alfonse Pham, Michigan State University.   The school attracted 58 participants representing 22 different nationalities, with around half from Europe and the other half from Asia and the Americas. The programme comprised 26 lectures, each of 90 minutes, and 13 hours of case study. The students were given homework each day and had an opportunity to sit a final exam, which counted towards university credit. Feedback from the participants was extremely positive, praising the expertise and enthusiasm of the lecturers, as well as the high standard and quality of their lectures. Initial dis...

  8. A symmetrical rail accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Igenbergs, E. (Technische Univ. Muenchen, Lehrstuhl fuer Raumfahrttechnik, Richard-Wagner-Strasse 18, 8000 Muenchen 2 (DE))

    1991-01-01

    This paper reports on the symmetrical rail accelerator that has four rails, which are arranged symmetrically around the bore. The opposite rails have the same polarity and the adjacent rails the opposite polarity. In this configuration the radial force acting upon the individual rails is significantly smaller than in a conventional 2-rail configuration and a plasma armature is focussed towards the axis of the barrel. Experimental results indicate a higher efficiency compared to a conventional rail accelerator.

  9. Advanced Accelerator Concepts

    International Nuclear Information System (INIS)

    This conference proceedings represent the results of theThird Advanced Accelerator Concepts Workshop held in PortJefferson, New York. The workshop was sponsored by the U.S.Department of Energy, the Office of Navel Research and BrookhavenNational Laboratory. The purpose was to assess new techniques forproduction of ultra-high gradient acceleration and to addressengineering issues in achieving this goal. There are eighty-onepapers collected in the proceedings and all have been abstractedfor the database

  10. CEBAF Accelerator Achievements

    International Nuclear Information System (INIS)

    In the past decade, nuclear physics users of Jefferson Lab's Continuous Electron Beam Accelerator Facility (CEBAF) have benefited from accelerator physics advances and machine improvements. As of early 2011, CEBAF operates routinely at 6 GeV, with a 12 GeV upgrade underway. This article reports highlights of CEBAF's scientific and technological evolution in the areas of cryomodule refurbishment, RF control, polarized source development, beam transport for parity experiments, magnets and hysteresis handling, beam breakup, and helium refrigerator operational optimization.

  11. Accelerating Cosmologies from Compactification

    CERN Document Server

    Townsend, P K; Townsend, Paul K.; Wohlfarth, Mattias N.R.

    2003-01-01

    A solution of the (4+n)-dimensional vacuum Einstein equations is found for which spacetime is compactified on a compact hyperbolic manifold of time-varying volume to a flat four-dimensional FLRW cosmology undergoing accelerated expansion in Einstein conformal frame. This shows that the `no-go' theorem forbidding acceleration in `standard' (time-independent) compactifications of string/M-theory does not apply to `cosmological' (time-dependent) hyperbolic compactifications.

  12. Designing reliability into accelerators

    International Nuclear Information System (INIS)

    Future accelerators will have to provide a high degree of reliability. Quality must be designed in right from the beginning and must remain a central theme throughout the project. The problem is similar to the problems facing US industry today, and examples of the successful application of quality engineering will be given. Different aspects of an accelerator project will be addressed: Concept, Design, Motivation, Management Techniques, and Fault Diagnosis. The importance of creating and maintaining a coherent team will be stressed

  13. Accelerated cyclic corrosion tests

    OpenAIRE

    Prošek T.

    2016-01-01

    Accelerated corrosion testing is indispensable for material selection, quality control and both initial and residual life time prediction for bare and painted metallic, polymeric, adhesive and other materials in atmospheric exposure conditions. The best known Neutral Salt Spray (NSS) test provides unrealistic conditions and poor correlation to exposures in atmosphere. Modern cyclic accelerated corrosion tests include intermittent salt spray, wet and dry phases and eventually other technical p...

  14. Accelerating News Issue 2

    CERN Document Server

    Kahle, K; Wildner, E

    2012-01-01

    In this summer issue we look at how developments in collimator materials could have applications in aerospace and beyond, and how Polish researchers are harnessing accelerators for medical and industrial uses. We see how the LHC luminosity upgrade is linking with European industry and US researchers, and how the neutrino oscillation community is progressing. We find out the mid-term status of TIARA-PP and how it is mapping European accelerator education resources.

  15. 固定资产新加速折旧政策影响分析%New Accelerated Depreciation of Fixed Assets Policy Impact Analysis

    Institute of Scientific and Technical Information of China (English)

    罗鉴益; 徐伟

    2016-01-01

    2014年10月财政部、国家税务总局联合发布了关于固定资产新加速折旧政策的通知。新政策旨在推动我国经济转型,加速促进传统企业的技术改造,鼓励扶持中小企业创业创新,提高国际竞争能力。为帮助企业正确选择加速折旧政策从而实现减税负,对固定资产加速折旧方法的设计、新加速折旧政策及存在的问题进行了分析,对固定资产的认定标准、折旧方法和年限的确定、研发费用的加计扣除,以及加速折旧的选择时机等进行了探讨。%In October 2014,the Ministry of Finance and the State Administration of Taxation jointly issued a notice about the policy of new accelerated depreciation of fixed assets.New policy aimed at promoting China ’s economic and the traditional enterprise ’s technological transformation, encouraging and supporting small and medium-sized enterprises business innovation and improving the international competitiveness.This paper analyzed the design of accelerated depreciation of fixed assets,new accelerated depreciation policy and existing problems.The judging standard of fixed assets,depreciation method,depreciation life confirmation,research and development costs deduction and timing of accelerated depreciation aspects,that choosing accelerated depreciation policy to help enterprise reduce tax incidence and so on were discussed.

  16. Detection of linear ego-acceleration from optic flow.

    Science.gov (United States)

    Festl, Freya; Recktenwald, Fabian; Yuan, Chunrong; Mallot, Hanspeter A

    2012-07-20

    Human observers are able to estimate various ego-motion parameters from optic flow, including rotation, translational heading, time-to-collision (TTC), time-to-passage (TTP), etc. The perception of linear ego-acceleration or deceleration, i.e., changes of translational velocity, is less well understood. While time-to-passage experiments indicate that ego-acceleration is neglected, subjects are able to keep their (perceived) speed constant under changing conditions, indicating that some sense of ego-acceleration or velocity change must be present. In this paper, we analyze the relation of ego-acceleration estimates and geometrical parameters of the environment using simulated flights through cylindrical and conic (narrowing or widening) corridors. Theoretical analysis shows that a logarithmic ego-acceleration parameter, called the acceleration rate ρ, can be calculated from retinal acceleration measurements. This parameter is independent of the geometrical layout of the scene; if veridical ego-motion is known at some instant in time, acceleration rate allows updating of ego-motion without further depth-velocity calibration. Results indicate, however, that subjects systematically confuse ego-acceleration with corridor narrowing and ego-deceleration with corridor widening, while veridically judging ego-acceleration in straight corridors. We conclude that judgments of ego-acceleration are based on first-order retinal flow and do not make use of acceleration rate or retinal acceleration.

  17. Nuclear physics accelerator facilities

    International Nuclear Information System (INIS)

    Brief descriptions are given of DOE and Nuclear Physics program operated and sponsored accelerator facilities. Specific facilities covered are the Argonne Tandem/Linac Accelerator System, the Tandem/AGS Heavy Ion Facility at Brookhaven National Laboratory, the proposed Continuous Beam Accelerator at Newport News, Virginia, the Triangle Universities Nuclear Laboratory at Duke University, the Bevalac and the SuperHILAC at Lawrence Berkeley Laboratory, the 88-Inch Cyclotron at Lawrence Berkeley Laboratory, the Clinton P. Anderson Meson Physics Facility at Los Alamos National Laboratory, the Bates Linear Accelerator Center at Massachusetts Institute of Technology, the Holifield Heavy Ion Research Facility at Oak Ridge National Laboratory, the Nuclear Physics Injector at Stanford Linear Accelerator Center, the Texas A and M Cyclotrons, the Tandem/Superconducting Booster Accelerator at the University of Washington and the Tandem Van de Graaff at the A.W. Wright Nuclear Structure Laboratory of Yale University. Included are acquisition cost, research programs, program accomplishments, future directions, and operating parameters of each facility

  18. Accelerators for America's Future

    Science.gov (United States)

    Bai, Mei

    2016-03-01

    Particle accelerator, a powerful tool to energize beams of charged particles to a desired speed and energy, has been the working horse for investigating the fundamental structure of matter and fundermental laws of nature. Most known examples are the 2-mile long Stanford Linear Accelerator at SLAC, the high energy proton and anti-proton collider Tevatron at FermiLab, and Large Hadron Collider that is currently under operation at CERN. During the less than a century development of accelerator science and technology that led to a dazzling list of discoveries, particle accelerators have also found various applications beyond particle and nuclear physics research, and become an indispensible part of the economy. Today, one can find a particle accelerator at almost every corner of our lives, ranging from the x-ray machine at the airport security to radiation diagnostic and therapy in hospitals. This presentation will give a brief introduction of the applications of this powerful tool in fundermental research as well as in industry. Challenges in accelerator science and technology will also be briefly presented

  19. Diffusive Shock Acceleration and Reconnection Acceleration Processes

    Science.gov (United States)

    Zank, G. P.; Hunana, P.; Mostafavi, P.; Le Roux, J. A.; Li, Gang; Webb, G. M.; Khabarova, O.; Cummings, A.; Stone, E.; Decker, R.

    2015-12-01

    Shock waves, as shown by simulations and observations, can generate high levels of downstream vortical turbulence, including magnetic islands. We consider a combination of diffusive shock acceleration (DSA) and downstream magnetic-island-reconnection-related processes as an energization mechanism for charged particles. Observations of electron and ion distributions downstream of interplanetary shocks and the heliospheric termination shock (HTS) are frequently inconsistent with the predictions of classical DSA. We utilize a recently developed transport theory for charged particles propagating diffusively in a turbulent region filled with contracting and reconnecting plasmoids and small-scale current sheets. Particle energization associated with the anti-reconnection electric field, a consequence of magnetic island merging, and magnetic island contraction, are considered. For the former only, we find that (i) the spectrum is a hard power law in particle speed, and (ii) the downstream solution is constant. For downstream plasmoid contraction only, (i) the accelerated spectrum is a hard power law in particle speed; (ii) the particle intensity for a given energy peaks downstream of the shock, and the distance to the peak location increases with increasing particle energy, and (iii) the particle intensity amplification for a particular particle energy, f(x,c/{c}0)/f(0,c/{c}0), is not 1, as predicted by DSA, but increases with increasing particle energy. The general solution combines both the reconnection-induced electric field and plasmoid contraction. The observed energetic particle intensity profile observed by Voyager 2 downstream of the HTS appears to support a particle acceleration mechanism that combines both DSA and magnetic-island-reconnection-related processes.

  20. Accelerated partial breast irradiation: An analysis of variables associated with late toxicity and long-term cosmetic outcome after high-dose-rate interstitial brachytherapy

    International Nuclear Information System (INIS)

    Purpose: To perform a detailed analysis of variables associated with late tissue effects of high-dose-rate (HDR) interstitial brachytherapy accelerated partial breast irradiation (APBI) in a large cohort of patients with prolonged follow-up. Methods and Materials: Beginning in 1995, 75 women with Stage I/II breast cancer were enrolled in identical institutional trials evaluating APBI as monotherapy after lumpectomy. Patients eligible included those with T1-2, N0-1 (≤3 nodes positive), M0 tumors of nonlobular histology with negative surgical margins, no extracapsular nodal extension, and negative results on postexcision mammogram. All patients underwent surgical excision and postoperative irradiation with HDR interstitial brachytherapy. The planning target volume was defined as the excision cavity plus a 2-cm margin. Treatment was delivered with a high-activity Ir-192 source at 3.4 Gy per fraction twice daily for 5 days to a total dose of 34 Gy. Dosimetric analyses were performed with three-dimensional postimplant dose and volume reconstructions. All patients were evaluated at 3-6-month intervals and assessed with a standardized cosmetic rating scale and according to Radiation Therapy Oncology Group late normal tissue toxicity scoring criteria. Clinical and therapy-related features were analyzed for their relationship to cosmetic outcome and toxicity rating. Clinical features analyzed included age, volume of resection, history of diabetes or hypertension, extent of axillary surgery, and systemic therapies. Therapy-related features analyzed included volume of tissue encompassed by the 100%, 150%, and 200% isodose lines (V100, V150, and V200, respectively), the dose homogeneity index (DHI), number of source dwell positions, and planar separation. Results: The median follow-up of all patients was 73 months (range, 43-118 months). The cosmetic outcome at last follow-up was rated as excellent, good, and fair/poor in 67%, 24%, and 9% of patients, respectively

  1. Generation mean analysis of grain yield and its related traits in barley (Hordeum vulgare L.

    Directory of Open Access Journals (Sweden)

    R. S. Raikwar

    2015-03-01

    Full Text Available Generation mean analysis was performed using three crosses namely DL 88 x K 560, K 603 x Azad, RD 2552 x NDB 1020 to study the nature and magnitude of gene effects for yield and its component characters in barley (Hordeum vulgare L.. The F1, F2, BC1 and BC2 of these crosses along with P1 and P2 were studied for six morphological traits. Additive x additive (i epistatic effect was more important and higher than the dominance x dominance (l epistatic effect in the inheritance of no. of effective tillers/plant in DL88 x K560, length of main spike and grain yield/plant in RD 2552 x NDB1020. The length of main spike, weight of grains/main spike, 1000-grain weight and grain yield/plant were significantly higher in RD 2552 x NDB 1020.Thus, these characters were mainly under the control of dominance x dominance (l type of epistasis. Therefore, selection for these characters would be fruitful, if delayed till dominance and epistasis effects are reduced to minimum. The additive × additive (i type gene interaction and duplicate epistasis also seen in this trait suggest the possibilities of obtaining transgressive segregants in later generations. The study revealed the importance of both additive and non-additive types of gene interaction for all the traits studied.

  2. Accelerating DSMC data extraction.

    Energy Technology Data Exchange (ETDEWEB)

    Gallis, Michail A.; Piekos, Edward Stanley

    2006-10-01

    In many direct simulation Monte Carlo (DSMC) simulations, the majority of computation time is consumed after the flowfield reaches a steady state. This situation occurs when the desired output quantities are small compared to the background fluctuations. For example, gas flows in many microelectromechanical systems (MEMS) have mean speeds more than two orders of magnitude smaller than the thermal speeds of the molecules themselves. The current solution to this problem is to collect sufficient samples to achieve the desired resolution. This can be an arduous process because the error is inversely proportional to the square root of the number of samples so we must, for example, quadruple the samples to cut the error in half. This work is intended to improve this situation by employing more advanced techniques, from fields other than solely statistics, for determining the output quantities. Our strategy centers on exploiting information neglected by current techniques, which collect moments in each cell without regard to one another, values in neighboring cells, nor their evolution in time. Unlike many previous acceleration techniques that modify the method itself, the techniques examined in this work strictly post-process so they may be applied to any DSMC code without affecting its fidelity or generality. Many potential methods are drawn from successful applications in a diverse range of areas, from ultrasound imaging to financial market analysis. The most promising methods exploit relationships between variables in space, which always exist in DSMC due to the absence of shocks. Disparate techniques were shown to produce similar error reductions, suggesting that the results shown in this report may be typical of what is possible using these methods. Sample count reduction factors of approximately three to five were found to be typical, although factors exceeding ten were shown on some variables under some techniques.

  3. Time derivative of earthquake acceleration

    Institute of Scientific and Technical Information of China (English)

    Mai Tong; Guo-Quan Wang; George C.Lee

    2005-01-01

    Unlike acceleration, velocity, and displacement, the time derivative of acceleration (TDoA) of ground motion has not been extensively studied. In this paper, the basic characteristics of TDoA are evaluated based on records from the 1999Chi-Chi, earthquake (Mw 7.6) and one of its aftershocks (Mw 6.2). It is found that the maximum TDoA at a free-field station was over 31,200 crm/s3 (31.8 g/s); and the duration of "strong" TDoA, between the first and the last time points exceeding 2,000 cm/s3 (2 g/s), was almost one minute near the epicenter area. Since ground TDoA sensors are not commonly available,the time series are calculated by direct numerical differentiation of acceleration time series. Relative error analysis shows that the error is non-transitive and total error is within 4%. The density function of TDoA amplitude, frequency content and spatial distribution of peak ground jerk (PGJ) are evaluated. The study also includes examination of some TDoA responses from a seven-story building and comparison of ground TDoA with the limit TDoA used in the transportation industry for ride comfort. Some potential impacts of TDoA on humans have also been reviewed.

  4. Small type accelerator. Try for accelerator driven system

    CERN Document Server

    Mori, Y

    2003-01-01

    FFAG (Fixed-field alternating gradient) accelerator for accelerator driven subcritical reactor, which aims to change from long-lived radioactive waste to short-lived radioactivity, is introduced. It is ring accelerator. The performance needed is proton as accelerator particle, 10MW (total) beam power, about 1GeV beam energy, >30% power efficiency and continuous beam. The feature of FFAG accelerator is constant magnetic field. PoP (Proof-of-principle)-FFAG accelerator, radial type, was run at first in Japan in 2000. The excursion is about some ten cm. In principle, beam can be injected and extracted at any place of ring. The 'multi-fish' acceleration can accelerate beams to 100% duty by repeating acceleration. 150MeV-FFAG accelerator has been started since 2001. It tried to practical use, for example, treatment of cancer. (S.Y.)

  5. Analysis of the dependence of surfatron acceleration of electrons by an electromagnetic wave in space plasma on the particle momentum along the wave front

    Energy Technology Data Exchange (ETDEWEB)

    Erokhin, A. N., E-mail: nerokhin@mx.iki.rssi.ru [People’s Friendship University of Russia (Russian Federation); Zol’nikova, N. N. [Russian Academy of Sciences, Space Research Institute (Russian Federation); Erokhin, N. S. [People’s Friendship University of Russia (Russian Federation)

    2016-01-15

    Based on the numerical solution of the nonlinear nonstationary second-order equation for the wave phase on the particle trajectory, the dynamics of surfatron acceleration of electrons by an electromagnetic wave propagating across the external magnetic field in space plasma is analyzed as a function of the electron momentum along the wave front. Numerical calculations show that, for strongly relativistic initial values of the electron momentum component along the wave front g{sub y}(0) (the other parameters of the problem being the same), electrons are trapped into the regime of ultrarelativistic surfatron acceleration within a certain interval of the initial wave phase Ψ(0) on the particle trajectory. It is assumed in the calculations that vertical bar Ψ(0) vertical bar ≤ π. For strongly relativistic values of g{sub y}(0), electrons are immediately trapped by the wave for 19% of the initial values of the phase Ψ(0) (favorable phases). For the rest of the values of Ψ(0), trapping does not occur even at long times. This circumstance substantially simplifies estimations of the wave damping due to particle acceleration in subsequent calculations. The dynamics of the relativistic factor and the components of the electron velocity and momentum under surfatron acceleration is also analyzed. The obtained results are of interest for the development of modern concepts of possible mechanisms of generation of ultrarelativistic particle fluxes in relatively calm space plasma, as well as for correct interpretation of observational data on the fluxes of such particles and explanation of possible reasons for the deviation of ultrarelativistic particle spectra detected in the heliosphere from the standard power-law scalings and the relation of these variations to space weather and large-scale atmospheric processes similar to tropical cyclones.

  6. Finite element analysis and frequency shift studies for the bridge coupler of the coupled cavity linear accelerator of the spallation neutron source.

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Z. (Zukun)

    2001-01-01

    The Spallation Neutron Source (SNS) is an accelerator-based neutron scattering research facility. The linear accelerator (linac) is the principal accelerating structure and divided into a room-temperature linac and a superconducting linac. The normal conducting linac system that consists of a Drift Tube Linac (DTL) and a Coupled Cavity Linac (CCL) is to be built by Los Alamos National Laboratory. The CCL structure is 55.36-meters long. It accelerates H- beam from 86.8 Mev to 185.6 Mev at operating frequency of 805 MHz. This side coupled cavity structure has 8 cells per segment, 12 segments and 11 bridge couplers per module, and 4 modules total. A 5-MW klystron powers each module. The number 3 and number 9 bridge coupler of each module are connected to the 5-MW RF power supply. The bridge coupler with length of 2.5 {beta}{gamma} is a three-cell structure and located between the segments and allows power flow through the module. The center cell of each bridge coupler is excited during normal operation. To obtain a uniform electromagnetic filed and meet the resonant frequency shift, the RF induced heat must be removed. Thus, the thermal deformation and frequency shift studies are performed via numerical simulations in order to have an appropriate cooling design and predict the frequency shift under operation. The center cell of the bridge coupler also contains a large 4-inch slug tuner and a tuning post that used to provide bulk frequency adjustment and field intensity adjustment, so that produce the proper total field distribution in the module assembly.

  7. Accelerating nondiffracting beams

    Energy Technology Data Exchange (ETDEWEB)

    Yan, Shaohui; Li, Manman; Yao, Baoli, E-mail: yaobl@opt.ac.cn; Yu, Xianghua; Lei, Ming; Dan, Dan; Yang, Yanlong; Min, Junwei; Peng, Tong

    2015-06-05

    We present a set of beams which combine the properties of accelerating beams and (conventional) diffraction-free beams. These beams can travel along a desired trajectory while keeping an approximately invariant transverse profile, which may be (higher-order) Bessel-, Mathieu- or parabolic-nondiffracting-like beams, depending on the initial complex amplitude distribution. A possible application of these beams presented here may be found in optical trapping field. For example, a higher-order Bessel-like beam, which has a hollow (transverse) pattern, is suitable for guiding low-refractive-index or metal particles along a curve. - Highlights: • A set of beams having arbitrary trajectories of accelerating and nondiffracting behaviors are generalized and presented. • Bessel-like accelerating beams are generalized to the higher-order (hollow) version. • Mathieu-like accelerating beams and parabolic-nondiffracting-like accelerating beams are presented. • A possible application of these beams may be found in optical trapping and guiding of particles.

  8. Dielectric laser accelerators

    Science.gov (United States)

    England, R. Joel; Noble, Robert J.; Bane, Karl; Dowell, David H.; Ng, Cho-Kuen; Spencer, James E.; Tantawi, Sami; Wu, Ziran; Byer, Robert L.; Peralta, Edgar; Soong, Ken; Chang, Chia-Ming; Montazeri, Behnam; Wolf, Stephen J.; Cowan, Benjamin; Dawson, Jay; Gai, Wei; Hommelhoff, Peter; Huang, Yen-Chieh; Jing, Chunguang; McGuinness, Christopher; Palmer, Robert B.; Naranjo, Brian; Rosenzweig, James; Travish, Gil; Mizrahi, Amit; Schachter, Levi; Sears, Christopher; Werner, Gregory R.; Yoder, Rodney B.

    2014-10-01

    The use of infrared lasers to power optical-scale lithographically fabricated particle accelerators is a developing area of research that has garnered increasing interest in recent years. The physics and technology of this approach is reviewed, which is referred to as dielectric laser acceleration (DLA). In the DLA scheme operating at typical laser pulse lengths of 0.1 to 1 ps, the laser damage fluences for robust dielectric materials correspond to peak surface electric fields in the GV /m regime. The corresponding accelerating field enhancement represents a potential reduction in active length of the accelerator between 1 and 2 orders of magnitude. Power sources for DLA-based accelerators (lasers) are less costly than microwave sources (klystrons) for equivalent average power levels due to wider availability and private sector investment. Because of the high laser-to-particle coupling efficiency, required pulse energies are consistent with tabletop microJoule class lasers. Combined with the very high (MHz) repetition rates these lasers can provide, the DLA approach appears promising for a variety of applications, including future high-energy physics colliders, compact light sources, and portable medical scanners and radiative therapy machines.

  9. Plasma-based accelerator structures

    Energy Technology Data Exchange (ETDEWEB)

    Schroeder, Carl B.

    1999-12-01

    Plasma-based accelerators have the ability to sustain extremely large accelerating gradients, with possible high-energy physics applications. This dissertation further develops the theory of plasma-based accelerators by addressing three topics: the performance of a hollow plasma channel as an accelerating structure, the generation of ultrashort electron bunches, and the propagation of laser pulses is underdense plasmas.

  10. Plasma-based accelerator structures

    International Nuclear Information System (INIS)

    Plasma-based accelerators have the ability to sustain extremely large accelerating gradients, with possible high-energy physics applications. This dissertation further develops the theory of plasma-based accelerators by addressing three topics: the performance of a hollow plasma channel as an accelerating structure, the generation of ultrashort electron bunches, and the propagation of laser pulses is underdense plasmas

  11. Superconducting accelerator magnet design

    International Nuclear Information System (INIS)

    Superconducting dipoles, quadrupoles and correction magnets are necessary to achieve the high magnetic fields required for big accelerators presently in construction or in the design phase. Different designs of superconducting accelerator magnets are described and the designs chosen at the big accelerator laboratories are presented. The most frequently used cosθ coil configuration is discussed in detail. Approaches for calculating the magnetic field quality including coil end fields are presented. Design details of the cables, coils, mechanical structures, yokes, helium vessels and cryostats including thermal radiation shields and support structures used in superconducting magnets are given. Necessary material properties are mentioned. Finally, the main results of magnetic field measurements and quench statistics are presented. (orig.)

  12. Particle accelerator physics

    CERN Document Server

    Wiedemann, Helmut

    2007-01-01

    Particle Accelerator Physics is an in-depth and comprehensive introduction to the field of high-energy particle acceleration and beam dynamics. Part I gathers the basic tools, recalling the essentials of electrostatics and electrodynamics as well as of particle dynamics in electromagnetic fields. Part II is an extensive primer in beam dynamics, followed in Part III by the introduction and description of the main beam parameters. Part IV is devoted to the treatment of perturbations in beam dynamics. Part V discusses the details of charged particle accleration. Part VI and Part VII introduce the more advanced topics of coupled beam dynamics and the description of very intense beams. Part VIII is an exhaustive treatment of radiation from accelerated charges and introduces important sources of coherent radiation such as synchrotrons and free-electron lasers. Part IX collects the appendices gathering useful mathematical and physical formulae, parameters and units. Solutions to many end-of-chapter problems are give...

  13. Superconducting Accelerator Magnets

    CERN Document Server

    Mess, K H; Wolff, S

    1996-01-01

    The main topic of the book are the superconducting dipole and quadrupole magnets needed in high-energy accelerators and storage rings for protons, antiprotons or heavy ions. The basic principles of low-temperature superconductivity are outlined with special emphasis on the effects which are relevant for accelerator magnets. Properties and fabrication methods of practical superconductors are described. Analytical methods for field calculation and multipole expansion are presented for coils without and with iron yoke. The effect of yoke saturation and geometric distortions on field quality is studied. Persistent magnetization currents in the superconductor and eddy currents the copper part of the cable are analyzed in detail and their influence on field quality and magnet performance is investigated. Superconductor stability, quench origins and propagation and magnet protection are addressed. Some important concepts of accelerator physics are introduced which are needed to appreciate the demanding requirements ...

  14. Uniform Acceleration in General Relativity

    CERN Document Server

    Friedman, Yaakov

    2016-01-01

    We extend de la Fuente and Romero's defining equation for uniform acceleration in a general curved spacetime from linear acceleration to the full Lorentz covariant uniform acceleration. In a flat spacetime background, we have explicit solutions. We use generalized Fermi-Walker transport to parallel transport the Frenet basis along the trajectory. In flat spacetime, we obtain velocity and acceleration transformations from a uniformly accelerated system to an inertial system. We obtain the time dilation between accelerated clocks. We apply our acceleration transformations to the motion of a charged particle in a constant electromagnetic field and recover the Lorentz-Abraham-Dirac equation.

  15. Nuclear Physics accelerator facilities

    International Nuclear Information System (INIS)

    The Nuclear Physics program requires the existence and effective operation of large and complex accelerator facilities. These facilities provide the variety of projectile beams upon which virtually all experimental nuclear research depends. Their capability determine which experiments can be performed and which cannot. Seven existing accelerator facilities are operated by the Nuclear Physics program as national facilities. These are made available to all the Nation's scientists on the basis of scientific merit and technical feasibility of proposals. The national facilities are the Clinton P. Anderson Meson Physics Facility (LAMPF) at Los Alamos National Laboratory; the Bates Linear Accelerator Center at Massachusetts Institute of Technology; the Bevalac at Lawrence Berkeley Laboratory; the Tandem/AGS Heavy Ion Facility at Brookhaven National Laboratory; the ATLAS facility at Argonne National Laboratory; the 88-Inch Cyclotron at Lawrence Berkeley Laboratory; the Holifield Heavy Ion Research Facility at Oak Ridge National Laboratory. The Nuclear Physics Injector at the Stanford Linear Accelerator Center (SLAC) enables the SLAC facility to provide a limited amount of beam time for nuclear physics research on the same basis as the other national facilities. To complement the national facilities, the Nuclear Physics program supports on-campus accelerators at Duke University, Texas A and M University, the University of Washington, and Yale University. The facility at Duke University, called the Triangle Universities Nuclear Laboratory (TUNL), is jointly staffed by Duke University, North Carolina State University, and the University of North Carolina. These accelerators are operated primarily for the research use of the local university faculty, junior scientists, and graduate students

  16. Microelectromechanical acceleration-sensing apparatus

    Science.gov (United States)

    Lee, Robb M.; Shul, Randy J.; Polosky, Marc A.; Hoke, Darren A.; Vernon, George E.

    2006-12-12

    An acceleration-sensing apparatus is disclosed which includes a moveable shuttle (i.e. a suspended mass) and a latch for capturing and holding the shuttle when an acceleration event is sensed above a predetermined threshold level. The acceleration-sensing apparatus provides a switch closure upon sensing the acceleration event and remains latched in place thereafter. Examples of the acceleration-sensing apparatus are provided which are responsive to an acceleration component in a single direction (i.e. a single-sided device) or to two oppositely-directed acceleration components (i.e. a dual-sided device). A two-stage acceleration-sensing apparatus is also disclosed which can sense two acceleration events separated in time. The acceleration-sensing apparatus of the present invention has applications, for example, in an automotive airbag deployment system.

  17. Studies of accelerated compact toruses

    International Nuclear Information System (INIS)

    In an earlier publication we considered acceleration of plasma rings (Compact Torus). Several possible accelerator configurations were suggested and the possibility of focusing the accelerated rings was discussed. In this paper we consider one scheme, acceleration of a ring between coaxial electrodes by a B/sub theta/ field as in a coaxial rail-gun. If the electrodes are conical, a ring accelerated towards the apex of the cone undergoes self-similar compression (focusing) during acceleration. Because the allowable acceleration force, F/sub a/ = kappaU/sub m//R where (kappa -2, the accelerating distance for conical electrodes is considerably shortened over that required for coaxial electrodes. In either case, however, since the accelerating flux can expand as the ring moves, most of the accelerating field energy can be converted into kinetic energy of the ring leading to high efficiency

  18. Intermittent Sea Level Acceleration

    OpenAIRE

    Olivieri, M.; Istituto Nazionale di Geofisica e Vulcanologia, Sezione Bologna, Bologna, Italia; Spada, G.; Dipartimento di Scienze di Base e Fondamenti, Università di Urbino Carlo Bo, Urbino

    2013-01-01

    Using instrumental observations from the Permanent Service for Mean Sea Level (PSMSL), we provide a new assessment of the global sea{level acceleration for the last 2 centuries (1820-2010). Our results, obtained by a stack of tide gauge time series, con firm the existence of a global sea level acceleration (GSLA) and, coherently with independent assessments so far, they point to a value close to 0:01 mm/yr2. However, di fferently from previous studies, we discuss how change points or ...

  19. Seismic surveying and accelerators

    International Nuclear Information System (INIS)

    The paper deals with an investigation into the impact of earth vibrations on charged particle beams in modern colliders. It is ascertained that the displacement of accelerator magnetic elements from the perfect position results in the excitation of betatron oscillations and distortion of particle orbit position. The results of experimental investigations into seismic noises are presented for ASR, SSC, DESY and KEK. The rms orbit displacement in accelerators is estimated relying on the law of earth diffusion motion, according to which the variance of relative displacements is proportional to the distance between these points and time of observation. 6 refs., 3 figs., 2 tabs

  20. High intensity hadron accelerators

    International Nuclear Information System (INIS)

    This rapporteur report consists mainly of two parts. Part I is an abridged review of the status of all High Intensity Hadron Accelerator projects in the world in semi-tabulated form for quick reference and comparison. Part II is a brief discussion of the salient features of the different technologies involved. The discussion is based mainly on my personal experiences and opinions, tempered, I hope, by the discussions I participated in in the various parallel sessions of the workshop. In addition, appended at the end is my evaluation and expression of the merits of high intensity hadron accelerators as research facilities for nuclear and particle physics

  1. An Empirical Analysis into the Financial Accelerator Effect within China Marine Transportation Industry%中国航运产业金融加速器效应的实证分析

    Institute of Scientific and Technical Information of China (English)

    高永琳; 骆温平; 夏飞

    2016-01-01

    本文以我国2004-2014年间11个上市航运企业面板为样本,分析了货币政策在航运业中的金融加速器效应。在验证了航运业存在企业层面金融加速器效应的同时,通过引入2008年金融危机时间虚拟变量,证实了航运产业金融加速器效应的非线性性,得出经济环境下行时期,货币政策的金融加速器效应将会放大。本文的政策含义是,我国在利用货币金融政策促进航运业发展时,必须得考虑航运产业的金融加速器效应及其非线性性。%On the basis of 11 listed marine companies panel data during 2004-2014, this paper made an empirical analysis about the financial accelerator effect of monetary policy on China marine transportation industry. Not only did we prove the existence of financial accelerator effect in marine transportation industry but also found out the nonlinearity of this effect with the utilization of time dummy variable of 2008’s Global Financial Crisis, which indicates the amplification of the financial accelerator effect along with the degradation of global economy. According to the research, the financial accelerator effect and its nonlinearity should be taken into consideration when government carries out financial and monetary policies for marine transportation industry.

  2. Start-to-end simulation with rare isotope beam for post accelerator of the RAON accelerator

    CERN Document Server

    Jin, Hyunchang

    2016-01-01

    The RAON accelerator of the Rare Isotope Science Project (RISP) has been developed to create and accelerate various kinds of stable heavy ion beams and rare isotope beams for a wide range of the science applications. In the RAON accelerator, the rare isotope beams generated by the Isotope Separation On-Line (ISOL) system will be transported through the post accelerator, namely, from the post Low Energy Beam Transport (LEBT) system and the post Radio Frequency Quadrupole (RFQ) to the superconducting linac (SCL3). The accelerated beams will be put to use in the low energy experimental hall or accelerated again by the superconducting linac (SCL2) in order to be used in the high energy experimental hall. In this paper, we will describe the results of the start-to-end simulations with the rare isotope beams generated by the ISOL system in the post accelerator of the RAON accelerator. In addition, the error analysis and correction at the superconducting linac SCL3 will be presented.

  3. A LEGO paradigm for virtual accelerator concept

    International Nuclear Information System (INIS)

    The paper considers basic features of a Virtual Accelerator concept based on LEGO paradigm. This concept involves three types of components: different mathematical models for accelerator design problems, integrated beam simulation packages (i. e. COSY, MAD, OptiM and others), and a special class of virtual feedback instruments similar to real control systems (EPICS). All of these components should inter-operate for more complete analysis of control systems and increased fault tolerance. The Virtual Accelerator is an information and computing environment which provides a framework for analysis based on these components that can be combined in different ways. Corresponding distributed computing services establish interaction between mathematical models and low level control system. The general idea of the software implementation is based on the Service-Oriented Architecture (SOA) that allows using cloud computing technology and enables remote access to the information and computing resources. The Virtual Accelerator allows a designer to combine powerful instruments for modeling beam dynamics in a friendly way including both self-developed and well-known packages. In the scope of this concept the following is also proposed: the control system identification, analysis and result verification, visualization as well as virtual feedback for beam line operation. The architecture of the Virtual Accelerator system itself and results of beam dynamics studies are presented. (authors)

  4. Laser Guiding for GeV Laser-Plasma Accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Leemans, Wim; Esarey, Eric; Geddes, Cameron; Schroeder, C.B.; Toth, Csaba

    2005-06-06

    Guiding of relativistically intense laser beams in preformed plasma channels is discussed for development of GeV-class laser accelerators. Experiments using a channel guided laser wakefield accelerator (LWFA) at LBNL have demonstrated that near mono-energetic 100 MeV-class electron beams can be produced with a 10 TW laser system. Analysis, aided by particle-in-cell simulations, as well as experiments with various plasma lengths and densities, indicate that tailoring the length of the accelerator, together with loading of the accelerating structure with beam, is the key to production of mono-energetic electron beams. Increasing the energy towards a GeV and beyond will require reducing the plasma density and design criteria are discussed for an optimized accelerator module. The current progress and future directions are summarized through comparison with conventional accelerators, highlighting the unique short term prospects for intense radiation sources based on laser-driven plasma accelerators.

  5. Fitness Landscape Analysis for Optimum Multiuser Detection Problem

    Institute of Scientific and Technical Information of China (English)

    WANG Shaowei; ZHU Qiuping

    2007-01-01

    Optimum multiuser detection (OMD) for CDMA systems is an NP-complete combinatorial optimization problem. Fitness landscape has been proven to be very useful for understanding the behavior of combinatorial optimization algorithms and can help in predicting their performance. This paper analyzes the statistic properties of the fitness landscape of the OMD problem by performing autocorrelation analysis, fitness distance correlation test and epistasis measure. The analysis results explain why some random search algorithms are effective methods for OMD problem and give hints how to design more efficient randomized search heuristic algorithms for OMD.

  6. 小波变换在全线相继速动保护中的应用%OPTIMIZATION OF ACCELERATED TRIP SCHEME BASED ON WAVELET ANALYSIS

    Institute of Scientific and Technical Information of China (English)

    石铁洪; 张昊; 刘沛

    2001-01-01

    在线路距离保护Ⅱ段范围发生故障时,利用对侧开关跳闸时序电流的突变量加速本侧保护的跳闸,改善了保护的性能。这一相继速动原理曾在微机线路保护中得到应用,但在某些系统参数和故障类型下序电流的工频突变量微弱,判据灵敏度不足。文中提出了用双正交小波变换检测突变量的方法,以解决利用序电流作为突变量存在死区的问题。%This paper presents a novel approach to accelerated trip of power transmission lines by using biorthogonal wavelet transform to improve the performance of protection relays. The existing accelerated trip principle has been widely applied. However, a lower sensitivity has been observed for some special system parameters and fault types to which the second abrupt changes of sequence currents are especially faint. A wavelet decomposition algorithm is proposed in this paper, which possesses capabilities of fast calculation, partitioning the higher frequency band and linear phase. This algorithm provides an accelerated trip scheme, which can efficiently extract the faint second abrupt changes of currents and is able to deal with the dead-zone problem of conventional scheme. The simulation results of MATLAB/SIMULINK show its feasibility and efficiency.

  7. Clinical analysis of linear accelerator radiosurgery for 42 cases with trigeminal neuralgia%X刀治疗三叉神经痛42例临床分析

    Institute of Scientific and Technical Information of China (English)

    陈苏; 王如密; 王守森

    2008-01-01

    Objective To study the treatment effect of linear accelerator radiosurgery (X knife) on trigeminal neuralgia and the complications. Methods Follow-up was conducted in 42 cases of trigeminal neuralgia treated with linear accelerator radiosurgery in our department, and their complications and degree of pain relief were recorded. Results Outcomes were excellent in 14 (33.3%), good in 22 (52.4%), effective in 4 (9.5%) and poor in 2 (4.8%). The mean time of pain relief was 2.1 months. Seven (16.7%) cases experienced increased facial paresthesia. Conclusion Linear accelerator radiosurgery is a precise and effective treatment for trigeminal neuralgia.%目的 探讨直线加速器放射外科(X 刀)治疗三叉神经痛的疗效及其并发症.方法 回顾性分析我科收治的42例三叉神经痛患者的临床资料,均采用X刀治疗并随访疼痛缓解情况和并发症.结果 本组治疗效果为治愈14例(33.3%).显效22例(52.4%),有效4例(9.5%),无效2例(4.8%).疼痛缓解出现时间平均在2.1月之后.7例(16.7%)术后出现面部麻木.结论 X刀是一种精确而有效的治疗三叉神经痛的方法.

  8. Revising the Radiobiological Model of Synchronous Chemotherapy in Head-and-Neck Cancer: A New Analysis Examining Reduced Weighting of Accelerated Repopulation

    International Nuclear Information System (INIS)

    Purpose: Previous studies of synchronous chemoradiation therapy have modeled the additional effect of chemotherapy as additional radiation therapy biologically effective dose (BED). Recent trials of accelerated versus conventional fractionation chemoradiation have cast doubt on such modeling. The purpose of this study was to identify alternative models. Methods and Materials: Nine trials of platinum-based chemoradiation were identified. In radiation therapy-alone arms, the radiation therapy BED for tumor was calculated using standard parameters. In chemoradiation arms, 3 methods were used to calculate tumor BED (tBED): additional BED, addition of 9.3 Gy BED for tumor to the radiation therapy BED; zero repopulation, BED with no correction for repopulation; variable tp (the average doubling time during accelerated repopulation), values of tp 3-10 were used to examine a partial suppression of repopulation. The correlations between the calculated percentage change in tBED for each method and observed percentage change in local control were assessed using the Pearson product moment correlation. Results: Significant correlations were obtained for all 3 methods but were stronger with zero repopulation (P=.0002) and variable tp (tp = 10) (P=.0005) than additional BED (P=.02). Conclusions: Radiobiological models using modified parameters for accelerated repopulation seem to correlate strongly with outcome in chemoradiation studies. The variable tp method shows strong correlation for outcome in local control and is potentially a more suitable model in the chemoradiation setting. However, a lack of trials with an overall treatment time of more than 46 days inhibits further differentiation of the optimal model

  9. SPS accelerating cavity

    CERN Multimedia

    1983-01-01

    See photo 8302397: View from the downstream end of one of the SPS accelerating cavities (200 MHz, travelling wave structure). See 7603195 and 8011289 for more details, 7411032 for the travelling wave structure, and also 8104138. Giacomo Primadei stands on the left.

  10. The CERN accelerator complex

    CERN Multimedia

    Haffner, Julie

    2013-01-01

    The LHC is the last ring (dark grey line) in a complex chain of particle accelerators. The smaller machines are used in a chain to help boost the particles to their final energies and provide beams to a whole set of smaller experiments, which also aim to uncover the mysteries of the Universe.

  11. Hamburg Accelerator Conference

    International Nuclear Information System (INIS)

    From 20-24 July, Hamburg welcomed the Fifteenth International Conference on High Energy Accelerators (HEACC). A natural highlight was the recent commissioning success of the HERA electron-proton collider at Hamburg's DESY Laboratory and its first high energy electron-proton collision data. This gave the meeting the feel of a family event celebrating a newborn

  12. The CERN accelerator complex

    CERN Multimedia

    Christiane Lefèvre

    2008-01-01

    The LHC is the last ring (dark grey line) in a complex chain of particle accelerators. The smaller machines are used in a chain to help boost the particles to their final energies and provide beams to a whole set of smaller experiments, which also aim to uncover the mysteries of the Universe.

  13. The CERN accelerator complex

    CERN Multimedia

    De Melis, Cinzia

    2016-01-01

    The LHC is the last ring (dark blue line) in a complex chain of particle accelerators. The smaller machines are used in a chain to help boost the particles to their final energies and provide beams to a whole set of smaller experiments, which also aim to uncover the mysteries of the Universe.

  14. The Bevalac accelerator

    International Nuclear Information System (INIS)

    Presented are the characteristics of the Bevatron and SuperHilac heavy ion accelerators in a very general manner. Some aspects of their application in the field of biological medicine and some of the interesting results obtained in experiments on nuclear physics are mentioned. (Author). 20 refs, 2 figs, 2 tabs

  15. The CERN Accelerator School

    CERN Multimedia

    2016-01-01

      Introduction to accelerator physics This course will take place in Istanbul, Turkey, from 18 to 30 September 2016. It is now open for registration, and further information can be found here: http://cas.web.cern.ch/cas/Turkey-2016/Turkey-advert.html

  16. SPS accelerating cavity

    CERN Multimedia

    1980-01-01

    One of the SPS acceleration cavities (200 MHz, travelling wave structure). On the ceiling one sees the coaxial transmission line which feeds the power from the amplifier, located in a surface building above, to the upstream end of the cavity. See 7603195 for more details, 7411032 for the travelling wave structure, and also 8104138, 8302397.

  17. Accelerators in the sky

    International Nuclear Information System (INIS)

    The author surveys the large body of evidence showing that there are very efficient mechanisms capable of accelerating particles to high energies under very different astrophysical conditions. The circumstances whereby huge amounts of relativistic and ultrarelativistic particles such as one finds in a) cosmic rays, b) supernova remnants and c) radio galaxies and quasars are produced are considered. (Auth.)

  18. Prospects for Accelerator Technology

    Science.gov (United States)

    Todd, Alan

    2011-02-01

    Accelerator technology today is a greater than US$5 billion per annum business. Development of higher-performance technology with improved reliability that delivers reduced system size and life cycle cost is expected to significantly increase the total accelerator technology market and open up new application sales. Potential future directions are identified and pitfalls in new market penetration are considered. Both of the present big market segments, medical radiation therapy units and semiconductor ion implanters, are approaching the "maturity" phase of their product cycles, where incremental development rather than paradigm shifts is the norm, but they should continue to dominate commercial sales for some time. It is anticipated that large discovery-science accelerators will continue to provide a specialty market beset by the unpredictable cycles resulting from the scale of the projects themselves, coupled with external political and economic drivers. Although fraught with differing market entry difficulties, the security and environmental markets, together with new, as yet unrealized, industrial material processing applications, are expected to provide the bulk of future commercial accelerator technology growth.

  19. Heavy ion accelerator GANIL

    International Nuclear Information System (INIS)

    This article presents GANIL, a large national heavy ion accelerator. The broad problems of nuclear physics, atomic physics, astrophysics and physics of condensed media which can be approached and studied with this machine are discussed first, after which the final construction project is described. The project comprises a circular injector, a separated sector cyclotron up beam stripper, and a second separated cyclotron downstream

  20. Superconducting traveling wave accelerators

    International Nuclear Information System (INIS)

    This note considers the applicability of superconductivity to traveling wave accelerators. Unlike CW operation of a superconducting standing wave or circulating wave accelerator section, which requires improvement factors (superconductor conductivity divided by copper conductivity) of about 106 in order to be of practical use, a SUperconducting TRaveling wave Accelerator, SUTRA, operating in the pulsed mode requires improvement factors as low as about 103, which are attainable with niobium or lead at 4.2K, the temperature of liquid helium at atmospheric pressure. Changing from a copper traveling wave accelerator to SUTRA achieves the following. (1) For a given gradient SUTRA reduces the peak and average power requirements typically by a factor of 2. (2) SUTRA reduces the peak power still further because it enables us to increase the filling time and thus trade pulse width for gradient. (3) SUTRA makes possible a reasonably long section at higher frequencies. (4) SUTRA makes possible recirculation without additional rf average power. 8 references, 6 figures, 1 table