Marine Atmospheric Corrosion of Carbon Steel: A Review.

Science.gov (United States)

Alcántara, Jenifer; Fuente, Daniel de la; Chico, Belén; Simancas, Joaquín; Díaz, Iván; Morcillo, Manuel

2017-04-13

The atmospheric corrosion of carbon steel is an extensive topic that has been studied over the years by many researchers. However, until relatively recently, surprisingly little attention has been paid to the action of marine chlorides. Corrosion in coastal regions is a particularly relevant issue due the latter's great importance to human society. About half of the world's population lives in coastal regions and the industrialisation of developing countries tends to concentrate production plants close to the sea. Until the start of the 21st century, research on the basic mechanisms of rust formation in Cl - -rich atmospheres was limited to just a small number of studies. However, in recent years, scientific understanding of marine atmospheric corrosion has advanced greatly, and in the authors' opinion a sufficient body of knowledge has been built up in published scientific papers to warrant an up-to-date review of the current state-of-the-art and to assess what issues still need to be addressed. That is the purpose of the present review. After a preliminary section devoted to basic concepts on atmospheric corrosion, the marine atmosphere, and experimentation on marine atmospheric corrosion, the paper addresses key aspects such as the most significant corrosion products, the characteristics of the rust layers formed, and the mechanisms of steel corrosion in marine atmospheres. Special attention is then paid to important matters such as coastal-industrial atmospheres and long-term behaviour of carbon steel exposed to marine atmospheres. The work ends with a section dedicated to issues pending, noting a series of questions in relation with which greater research efforts would seem to be necessary.

Marine Atmospheric Corrosion of Carbon Steel: A Review

Science.gov (United States)

Alcántara, Jenifer; de la Fuente, Daniel; Chico, Belén; Simancas, Joaquín; Díaz, Iván; Morcillo, Manuel

2017-01-01

The atmospheric corrosion of carbon steel is an extensive topic that has been studied over the years by many researchers. However, until relatively recently, surprisingly little attention has been paid to the action of marine chlorides. Corrosion in coastal regions is a particularly relevant issue due the latter’s great importance to human society. About half of the world’s population lives in coastal regions and the industrialisation of developing countries tends to concentrate production plants close to the sea. Until the start of the 21st century, research on the basic mechanisms of rust formation in Cl−-rich atmospheres was limited to just a small number of studies. However, in recent years, scientific understanding of marine atmospheric corrosion has advanced greatly, and in the authors’ opinion a sufficient body of knowledge has been built up in published scientific papers to warrant an up-to-date review of the current state-of-the-art and to assess what issues still need to be addressed. That is the purpose of the present review. After a preliminary section devoted to basic concepts on atmospheric corrosion, the marine atmosphere, and experimentation on marine atmospheric corrosion, the paper addresses key aspects such as the most significant corrosion products, the characteristics of the rust layers formed, and the mechanisms of steel corrosion in marine atmospheres. Special attention is then paid to important matters such as coastal-industrial atmospheres and long-term behaviour of carbon steel exposed to marine atmospheres. The work ends with a section dedicated to issues pending, noting a series of questions in relation with which greater research efforts would seem to be necessary. PMID:28772766

Oceanic acidification affects marine carbon pump and triggers extended marine oxygen holes.

Science.gov (United States)

Hofmann, Matthias; Schellnhuber, Hans-Joachim

2009-03-03

Rising atmospheric CO(2) levels will not only drive future global mean temperatures toward values unprecedented during the whole Quaternary but will also lead to massive acidification of sea water. This constitutes by itself an anthropogenic planetary-scale perturbation that could significantly modify oceanic biogeochemical fluxes and severely damage marine biota. As a step toward the quantification of such potential impacts, we present here a simulation-model-based assessment of the respective consequences of a business-as-usual fossil-fuel-burning scenario where a total of 4,075 Petagrams of carbon is released into the atmosphere during the current millennium. In our scenario, the atmospheric pCO(2) level peaks at approximately 1,750 microatm in the year 2200 while the sea-surface pH value drops by >0.7 units on global average, inhibiting the growth of marine calcifying organisms. The study focuses on quantifying 3 major concomitant effects. The first one is a significant (climate-stabilizing) negative feedback on rising pCO(2) levels as caused by the attenuation of biogenic calcification. The second one is related to the biological carbon pump. Because mineral ballast, notably CaCO(3), is found to play a dominant role in carrying organic matter through the water column, a reduction of its export fluxes weakens the strength of the biological carbon pump. There is, however, a third effect with severe consequences: Because organic matter is oxidized in shallow waters when mineral-ballast fluxes weaken, oxygen holes (hypoxic zones) start to expand considerably in the oceans in our model world--with potentially harmful impacts on a variety of marine ecosystems.

Marine sequestration of carbon in bacterial metabolites.

Science.gov (United States)

Lechtenfeld, Oliver J; Hertkorn, Norbert; Shen, Yuan; Witt, Matthias; Benner, Ronald

2015-03-31

Linking microbial metabolomics and carbon sequestration in the ocean via refractory organic molecules has been hampered by the chemical complexity of dissolved organic matter (DOM). Here, using bioassay experiments and ultra-high resolution metabolic profiling, we demonstrate that marine bacteria rapidly utilize simple organic molecules and produce exometabolites of remarkable molecular and structural diversity. Bacterial DOM is similar in chemical composition and structural complexity to naturally occurring DOM in sea water. An appreciable fraction of bacterial DOM has molecular and structural properties that are consistent with those of refractory molecules in the ocean, indicating a dominant role for bacteria in shaping the refractory nature of marine DOM. The rapid production of chemically complex and persistent molecules from simple biochemicals demonstrates a positive feedback between primary production and refractory DOM formation. It appears that carbon sequestration in diverse and structurally complex dissolved molecules that persist in the environment is largely driven by bacteria.

The relative contributions of biological and abiotic processes to carbon dynamics in subarctic sea ice

DEFF Research Database (Denmark)

Søgaard, Dorte Haubjerg; Thomas, David; Rysgaard, Søren

2013-01-01

Knowledge on the relative effects of biological activity and precipitation/dissolution of calcium carbonate (CaCO3) in influencing the air-ice CO2 exchange in sea-ice-covered season is currently lacking. Furthermore, the spatial and temporal occurrence of CaCO3 and other biogeochemical parameters...... in sea ice are still not well described. Here we investigated autotrophic and heterotrophic activity as well as the precipitation/dissolution of CaCO3 in subarctic sea ice in South West Greenland. Integrated over the entire ice season (71 days), the sea ice was net autotrophic with a net carbon fixation...... and CaCO3 precipitation. The net biological production could only explain 4 % of this sea-ice-driven CO2 uptake. Abiotic processes contributed to an air-sea CO2 uptake of 1.5 mmol m(-2) sea ice day(-1), and dissolution of CaCO3 increased the air-sea CO2 uptake by 36 % compared to a theoretical estimate...

COMBINED EFFECTS OF OCEAN ACIDIFICATION, OCEAN WARMING AND OIL SPILL ON ASPECTS OF DEVELOPMENT OF MARINE INVERTEBRATES

OpenAIRE

Arnberg, maj

2016-01-01

Full version unavailable due to 3rd party copyright restrictions. For decades, humans have impacted marine ecosystems in a variety of ways including contamination by pollution, fishing, and physical destruction of habitats. Global change has, and will, lead to alterations in in a number of abiotic factors of our ocean in particular reduced oxygen saturation, salinity changes, elevated temperature (ocean warming or OW) and elevated carbon dioxide (ocean acidification or OA). Now and in the...

Abiotic and biotic drivers of biomass change in a Neotropical forest

NARCIS (Netherlands)

Sande, van der M.T.; Pena Claros, M.; Ascarrunz, Nataly; Arets, E.J.M.M.; Licona, J.C.; Toledo, Marisol; Poorter, L.

2017-01-01

Summary
1. Tropical fores ts play an important role in the global carbon cycle, but the drivers of net forest biomass change (i.e. net carbon sequestration) are poorly understood. Here, we evaluate how abiotic factors (soil co nditions and disturbance) and biotic factors (forest structure,

Valuing blue carbon: carbon sequestration benefits provided by the marine protected areas in Colombia.

Directory of Open Access Journals (Sweden)

Tatiana G Zarate-Barrera

Full Text Available Marine protected areas are aimed to protect and conserve key ecosystems for the provision of a number of ecosystem services that are the basis for numerous economic activities. Among the several services that these areas provide, the capacity of sequestering (capturing and storing organic carbon is a regulating service, provided mainly by mangroves and seagrasses, that gains importance as alternatives for mitigating global warming become a priority in the international agenda. The objective of this study is to value the services associated with the capture and storage of oceanic carbon, known as Blue Carbon, provided by a new network of marine protected areas in Colombia. We approach the monetary value associated to these services through the simulation of a hypothetical market for oceanic carbon. To do that, we construct a benefit function that considers the capacity of mangroves and seagrasses for capturing and storing blue carbon, and simulate scenarios for the variation of key variables such as the market carbon price, the discount rate, the natural rate of loss of the ecosystems, and the expectations about the post-Kyoto negotiations. The results indicate that the expected benefits associated to carbon capture and storage provided by these ecosystems are substantial but highly dependent on the expectations in terms of the negotiations surrounding the extension of the Kyoto Protocol and the dynamics of the carbon credit's demand and supply. We also find that the natural loss rate of these ecosystems does not seem to have a significant effect on the annual value of the benefits. This approach constitutes one of the first attempts to value blue carbon as one of the services provided by conservation.

Effects of solar radiation on the abiotic and bacterially mediated carbon flux in aquatic ecosystems

Energy Technology Data Exchange (ETDEWEB)

Anesio, A.M.

2000-05-01

In this thesis, I studied some of the current aspects of organic matter photochemistry. I analyzed abiotic photo transformations of several types of dissolved (DOM) and particulate organic matter (POM). I also evaluated the effects of photo transformation of several types of DOM on bacteria. Finally, in a field experiment, I analyzed net effects of solar radiation on organic matter decomposition. DOM undergoes several transformations due to solar irradiation. One such transformation is photooxidation of organic matter into inorganic carbon. Results of this Thesis show that photooxidation is ubiquitous to all kinds of organic matter in both dissolved and particulate forms. The intensity of this process depends on several factors, including DOM composition, radiation type and time of exposure. Besides mineralization to inorganic carbon, DOM undergoes other chemical transformations due to UV radiation, with profound consequences to DOM availability for bacteria. Bioavailability was tested by measuring bacterial growth and respiration on irradiated and nonirradiated DOM from several types of humic matter and plant leachates. Irradiation of freshly-leached DOM often produced negative effects on bacteria, whereas irradiation of humic material was followed by stimulation of bacterial growth. The degree of stimulation seems to be related to the initial bioavailability of the DOM and to the capability of the DOM to produce hydrogen peroxide upon irradiation. Other factors also accounted for differences in bacterial response to photochemical modification of DOM, including length and type of irradiation exposure. The effects of solar radiation on litter decomposition were also evaluated using experiments that more closely mimic natural conditions. I could not observe differences between dry weight loss of leaves and culms exposed to solar radiation or kept in darkness, which may be explained by the fact that abiotic decomposition under solar radiation is counterbalanced by

Latitudinal gradients in degradation of marine dissolved organic carbon.

Directory of Open Access Journals (Sweden)

Carol Arnosti

Full Text Available Heterotrophic microbial communities cycle nearly half of net primary productivity in the ocean, and play a particularly important role in transformations of dissolved organic carbon (DOC. The specific means by which these communities mediate the transformations of organic carbon are largely unknown, since the vast majority of marine bacteria have not been isolated in culture, and most measurements of DOC degradation rates have focused on uptake and metabolism of either bulk DOC or of simple model compounds (e.g. specific amino acids or sugars. Genomic investigations provide information about the potential capabilities of organisms and communities but not the extent to which such potential is expressed. We tested directly the capabilities of heterotrophic microbial communities in surface ocean waters at 32 stations spanning latitudes from 76°S to 79°N to hydrolyze a range of high molecular weight organic substrates and thereby initiate organic matter degradation. These data demonstrate the existence of a latitudinal gradient in the range of complex substrates available to heterotrophic microbial communities, paralleling the global gradient in bacterial species richness. As changing climate increasingly affects the marine environment, changes in the spectrum of substrates accessible by microbial communities may lead to shifts in the location and rate at which marine DOC is respired. Since the inventory of DOC in the ocean is comparable in magnitude to the atmospheric CO(2 reservoir, such a change could profoundly affect the global carbon cycle.

Bacterioplankton: a sink for carbon in a coastal marine plankton community

International Nuclear Information System (INIS)

Ducklow, H.W.; Purdie, D.A.; Williams, P.J.LeB.; Davis, J.M.

1986-01-01

Recent determinations of high production rates (up to 30% of primary production in surface waters) implicate free-living marine bacterioplankton as a link in a microbial loop that supplements phytoplankton as food for herbivores. An enclosed water column of 300 cubic meters was used to test the microbial loop hypothesis by following the fate of carbon-14-labeled bacterioplankton for over 50 days. Only 2% of the label initially fixed from carbon-14-labeled glucose by bacteria was present in larger organisms after 13 days, at which time about 20% of the total label added remained in the particulate fraction. Most of the label appeared to pass directly from particles smaller than 1 micrometer (heterotrophic bacterioplankton and some bacteriovores) to respired labeled carbon dioxide or to regenerated dissolved organic carbon-14. Secondary (and, by implication, primary) production by organisms smaller than 1 micrometer may not be an important food source in marine food chains. Bacterioplankton can be a sink for carbon in planktonic food webs and may serve principally as agents of nutrient regeneration rather than as food

Marine botany. Second edition

International Nuclear Information System (INIS)

Dawes, C.J.

1998-01-01

Marine plants are a diverse group that include unicellular algae, seaweeds, seagrasses, salt marshes, and mangrove forests. They carry out a variety of ecological functions and serve as the primary producers in coastal wetlands and oceanic waters. The theme that connects such a wide variety of plants is their ecology, which was also emphasized in the 1981 edition. The goal of this revision is to present taxonomic, physiological, chemical, and ecological aspects of marine plants, their adaptations, and how abiotic and biotic factors interact in their communities. The data are presented in a concise, comparative manner in order to identify similarities and differences between communities such as salt marsh and mangroves or subtidal seaweeds and seagrasses. To accomplish this, the text is organized into five chapters that introduce the marine habitats, consider abiotic and biotic factors, and anthropogenic influences on the communities followed by seven chapters that deal with microalgae, seaweeds, salt marshes, mangroves, seagrasses, and coral reefs. Two appendixes are included; one presents simple field techniques and the other is a summary of seaweed uses

Chemical Composition of the Graphitic Black Carbon Fraction in Riverine and Marine Sediments at Submicron Scales using Carbon X-ray Spectromicroscopy

International Nuclear Information System (INIS)

Haberstroh, P.; Brandes, J.; Gelinas, Y.; Dickens, A.; Wirick, S.; Cody, G.

2006-01-01

The chemical composition of the graphitic black carbon (GBC) fraction of marine organic matter was explored in several marine and freshwater sedimentary environments along the west coast of North America and the Pacific Ocean. Analysis by carbon x-ray absorption near edge structure (C-XANES) spectroscopy and scanning transmission x-ray microscopy (STXM) show the GBC-fraction of Stillaguamish River surface sediments to be dominated by more highly-ordered and impure forms of graphite, together forming about 80% of the GBC, with a smaller percent of an aliphatic carbon component. Eel River Margin surface sediments had very little highly-ordered graphite, and were instead dominated by amorphous carbon and to a lesser extent, impure graphite. However, the GBC of surface sediments from the Washington State Slope and the Mexico Margin were composed almost solely of amorphous carbon. Pre-anthropogenic, highly-oxidized deep-sea sediments from the open Equatorial Pacific Ocean contained over half their GBC in different forms of graphite as well as highly-aliphatic carbon, low aromatic/highly-acidic aliphatic carbon, low aromatic/highly aliphatic carbon, and amorphous forms of carbon. Our results clearly show the impact of graphite and amorphous C phases in the BC fraction in modern riverine sediments and nearby marine shelf deposits. The pre-anthropogenic Equatorial Pacific GBC fraction is remarkable in the existence of highly-ordered graphite

Pathways for abiotic organic synthesis at submarine hydrothermal fields.

Science.gov (United States)

McDermott, Jill M; Seewald, Jeffrey S; German, Christopher R; Sylva, Sean P

2015-06-23

Arguments for an abiotic origin of low-molecular weight organic compounds in deep-sea hot springs are compelling owing to implications for the sustenance of deep biosphere microbial communities and their potential role in the origin of life. Theory predicts that warm H2-rich fluids, like those emanating from serpentinizing hydrothermal systems, create a favorable thermodynamic drive for the abiotic generation of organic compounds from inorganic precursors. Here, we constrain two distinct reaction pathways for abiotic organic synthesis in the natural environment at the Von Damm hydrothermal field and delineate spatially where inorganic carbon is converted into bioavailable reduced carbon. We reveal that carbon transformation reactions in a single system can progress over hours, days, and up to thousands of years. Previous studies have suggested that CH4 and higher hydrocarbons in ultramafic hydrothermal systems were dependent on H2 generation during active serpentinization. Rather, our results indicate that CH4 found in vent fluids is formed in H2-rich fluid inclusions, and higher n-alkanes may likely be derived from the same source. This finding implies that, in contrast with current paradigms, these compounds may form independently of actively circulating serpentinizing fluids in ultramafic-influenced systems. Conversely, widespread production of formate by ΣCO2 reduction at Von Damm occurs rapidly during shallow subsurface mixing of the same fluids, which may support anaerobic methanogenesis. Our finding of abiogenic formate in deep-sea hot springs has significant implications for microbial life strategies in the present-day deep biosphere as well as early life on Earth and beyond.

Development of a Model of Geophysical and Geochemical Controls on Abiotic Carbon Cycling on Earth-Like Planets

Science.gov (United States)

Neveu, M.; Felton, R.; Domagal-Goldman, S. D.; Desch, S. J.; Arney, G. N.

2017-12-01

About 20 Earth-sized planets (0.6-1.6 Earth masses and radii) have now been discovered beyond our solar system [1]. Although such planets are prime targets in the upcoming search for atmospheric biosignatures, their composition, geology, and climate are essentially unconstrained. Yet, developing an understanding of how these factors influence planetary evolution through time and space is essential to establishing abiotic backgrounds against which any deviations can provide evidence for biological activity. To this end, we are building coupled geophysical-geochemical models of abiotic carbon cycling on such planets. Our models are controlled by atmospheric factors such as temperature and composition, and compute interior inputs to atmospheric species. They account for crustal weathering, ocean-atmosphere equilibria, and exchange with the deep interior as a function of planet composition and size (and, eventually, age).Planets in other solar systems differ from the Earth not only in their bulk physical properties, but also likely in their bulk chemical composition [2], which influences key parameters such as the vigor of mantle convection and the near-surface redox state. Therefore, simulating how variations in such parameters affect carbon cycling requires us to simulate the above processes from first principles, rather than by using arbitrary parameterizations derived from observations as is often done with models of carbon cycling on Earth [3] or extrapolations thereof [4]. As a first step, we have developed a kinetic model of crustal weathering using the PHREEQC code [5] and kinetic data from [6]. We will present the ability of such a model to replicate Earth's carbon cycle using, for the time being, parameterizations for surface-interior-atmosphere exchange processes such as volcanism (e.g., [7]).[1] exoplanet.eu, 7/28/2017.[2] Young et al. (2014) Astrobiology 14, 603-626.[3] Lerman & Wu (2008) Kinetics of Global Geochemical Cycles. In Kinetics of Water

Lead isotopic composition of paleozoic and late proterozoic marine carbonate rocks in the vicinity of Yucca Mountains, Nevada

International Nuclear Information System (INIS)

Zartman, R.E.; Kwak, L.M.

1993-01-01

Paleozoic and Late Proterozoic marine carbonate rocks (limestones, dolomites, and their metamorphic equivalents) cropping out in the vicinity of Yucca Mountain contain lead with an isotopic composition strongly suggesting them to be a major source of the lead observed at Trench 14 in the carbonate phase of carbonate-silica veins and nearby surficial calcrete deposits. Six whole-rock samples of marine carbonate rocks yield 206 Pb/ 204 Pb = 19.21-29.06, 207 Pb/ 204 Pb = 15.74-16.01, and 208 Pb/ 204 Pb = 37.90-39.25, and leachate and residue fractions of the rocks reveal additional isotopic heterogeneity within individual samples. Two samples of eolian dust also have isotopic compositions lying along a 'carbonate' to 'silicate' mixing trend that appears to arise entirely from pedeogenic processes. The tendency for the marine carbonate rocks to evolve highly uranogenic, but not thorogenic, lead results in a distinctive isotopic composition that serves as a tracer in eolian dust and secondary carbonate minerals derived from the marine carbonate rocks

Sorption kinetics of TNT and RDX in anaerobic freshwater and marine sediments: Batch studies.

Science.gov (United States)

Ariyarathna, Thivanka; Vlahos, Penny; Tobias, Craig; Smith, Richard

2016-01-01

Examination of the partitioning of explosives onto sediment in marine environments is critical to predict the toxicological impacts of worldwide explosive-contaminated sites adjacent to estuaries, wetlands, and the coastal ocean. Marine sediments have been identified as sites of enhanced munitions removal, yet most studies addressing these interactions focus on soils and freshwater sediments. The present study measured the kinetics of 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) sorption onto 2 marine sediments of varying grain sizes (silt vs sand) and organic carbon (OC) content. Abiotic sediment sorption tests were performed at 23 °C, 15 °C, and 4 °C by spiking TNT and RDX solutions directly into anaerobic sediment slurries. Marine sediments showed significantly higher compound uptake rates (0.30-0.80 h(-1) ) than freshwater silt (0.0046-0.0065 h(-1) ) for both compounds, probably because of lower compound solubilities and a higher pH in marine systems. Equilibrium partition constants are on the same order of magnitude for marine silt (1.1-2.0 L kg(-1) sediment) and freshwater silt (1.4-3.1 L kg(-1) sediment) but lower for marine sand (0.72-0.92 L kg(-1) sediment). Total organic carbon content in marine sediments varied linearly with equilibrium partition constants for TNT and was moderately linear for RDX. Uptake rates and equilibrium constants of explosives are inversely correlated to temperature regardless of sediment type because of kinetic barriers associated with low temperatures. © 2015 SETAC.

Abiotic and bioaugmented granular activated carbon for the treatment of 1,4-dioxane-contaminated water.

Science.gov (United States)

Myers, Michelle A; Johnson, Nicholas W; Marin, Erick Zerecero; Pornwongthong, Peerapong; Liu, Yun; Gedalanga, Phillip B; Mahendra, Shaily

2018-06-04

1,4-Dioxane is a probable human carcinogen and an emerging contaminant that has been detected in surface water and groundwater resources. Many conventional water treatment technologies are not effective for the removal of 1,4-dioxane due to its high water solubility and chemical stability. Biological degradation is a potentially low-cost, energy-efficient approach to treat 1,4-dioxane-contaminated waters. Two bacterial strains, Pseudonocardia dioxanivorans CB1190 (CB1190) and Mycobacterium austroafricanum JOB5 (JOB5), have been previously demonstrated to break down 1,4-dioxane through metabolic and co-metabolic pathways, respectively. However, both CB1190 and JOB5 have been primarily studied in laboratory planktonic cultures, while most environmental microbes grow in biofilms on surfaces. Another treatment technology, adsorption, has not historically been considered an effective means of removing 1,4-dioxane due to the contaminant's low K oc and K ow values. We report that the granular activated carbon (GAC), Norit 1240, is an adsorbent with high affinity for 1,4-dioxane as well as physical dimensions conducive to attached bacterial growth. In abiotic batch reactor studies, 1,4-dioxane adsorption was reversible to a large extent. By bioaugmenting GAC with 1,4-dioxane-degrading microbes, the adsorption reversibility was minimized while achieving greater 1,4-dioxane removal when compared with abiotic GAC (95-98% reduction of initial 1,4-dioxane as compared to an 85-89% reduction of initial 1,4-dioxane, respectively). Bacterial attachment and viability was visualized using fluorescence microscopy and confirmed by amplification of taxonomic genes by quantitative polymerase chain reaction (qPCR) and an ATP assay. Filtered samples of industrial wastewater and contaminated groundwater were also tested in the bioaugmented GAC reactors. Both CB1190 and JOB5 demonstrated 1,4-dioxane removal greater than that of the abiotic adsorbent controls. This study suggests that

What do we really know about early diagenesis of non-marine carbonates?

Science.gov (United States)

De Boever, Eva; Brasier, Alexander T.; Foubert, Anneleen; Kele, Sándor

2017-11-01

Non-marine carbonate rocks including cave, spring, stream, calcrete and lacustrine-palustrine sediments, are susceptible to early diagenetic processes. These can profoundly alter the carbonate fabric and affect paleoclimatic proxies. This review integrates recent insights into diagenesis of non-marine carbonates and in particular the variety of early diagenetic processes, and presents a conceptual framework to address them. With ability to study at smaller and smaller scales, down to nanometers, one can now observe diagenesis taking place the moment initial precipitates have formed, and continuing thereafter. Diagenesis may affect whole rocks, but it typically starts in nano- and micro-environments. The potential for diagenetic alteration depends on the reactivity of the initial precipitate, commonly being metastable phases like vaterite, Ca-oxalates, hydrous Mg-carbonates and aragonite with regard to the ambient fluid. Furthermore, organic compounds commonly play a crucial role in hosting these early transformations. Processes like neomorphism (inversion and recrystallization), cementation and replacement generally result in an overall coarsening of the fabric and homogenization of the wide range of complex, primary microtextures. If early diagenetic modifications are completed in a short time span compared to the (annual to millennial) time scale of interest, then recorded paleoenvironmental signals and trends could still acceptably reflect original, depositional conditions. However, even compact, non-marine carbonate deposits may behave locally and temporarily as open systems to crystal-fluid exchange and overprinting of one or more geochemical proxies is not unexpected. Looking to the future, relatively few studies have examined the behaviour of promising geochemical records, such as clumped isotope thermometry and (non-conventional) stable isotopes, in well-constrained diagenetic settings. Ongoing and future in-vitro and in-situ experimental approaches will

Relevance of carbon stocks of marine sediments for national greenhouse gas inventories of maritime nations.

Science.gov (United States)

Avelar, Silvania; van der Voort, Tessa S; Eglinton, Timothy I

2017-12-01

Determining national carbon stocks is essential in the framework of ongoing climate change mitigation actions. Presently, assessment of carbon stocks in the context of greenhouse gas (GHG)-reporting on a nation-by-nation basis focuses on the terrestrial realm, i.e., carbon held in living plant biomass and soils, and on potential changes in these stocks in response to anthropogenic activities. However, while the ocean and underlying sediments store substantial quantities of carbon, this pool is presently not considered in the context of national inventories. The ongoing disturbances to both terrestrial and marine ecosystems as a consequence of food production, pollution, climate change and other factors, as well as alteration of linkages and C-exchange between continental and oceanic realms, highlight the need for a better understanding of the quantity and vulnerability of carbon stocks in both systems. We present a preliminary comparison of the stocks of organic carbon held in continental margin sediments within the Exclusive Economic Zone of maritime nations with those in their soils. Our study focuses on Namibia, where there is a wealth of marine sediment data, and draws comparisons with sediment data from two other countries with different characteristics, which are Pakistan and the United Kingdom. Results indicate that marine sediment carbon stocks in maritime nations can be similar in magnitude to those of soils. Therefore, if human activities in these areas are managed, carbon stocks in the oceanic realm-particularly over continental margins-could be considered as part of national GHG inventories. This study shows that marine sediment organic carbon stocks can be equal in size or exceed terrestrial carbon stocks of maritime nations. This provides motivation both for improved assessment of sedimentary carbon inventories and for reevaluation of the way that carbon stocks are assessed and valued. The latter carries potential implications for the management of

Relevance of carbon stocks of marine sediments for national greenhouse gas inventories of maritime nations

Directory of Open Access Journals (Sweden)

Silvania Avelar

2017-05-01

Full Text Available Abstract Background Determining national carbon stocks is essential in the framework of ongoing climate change mitigation actions. Presently, assessment of carbon stocks in the context of greenhouse gas (GHG-reporting on a nation-by-nation basis focuses on the terrestrial realm, i.e., carbon held in living plant biomass and soils, and on potential changes in these stocks in response to anthropogenic activities. However, while the ocean and underlying sediments store substantial quantities of carbon, this pool is presently not considered in the context of national inventories. The ongoing disturbances to both terrestrial and marine ecosystems as a consequence of food production, pollution, climate change and other factors, as well as alteration of linkages and C-exchange between continental and oceanic realms, highlight the need for a better understanding of the quantity and vulnerability of carbon stocks in both systems. We present a preliminary comparison of the stocks of organic carbon held in continental margin sediments within the Exclusive Economic Zone of maritime nations with those in their soils. Our study focuses on Namibia, where there is a wealth of marine sediment data, and draws comparisons with sediment data from two other countries with different characteristics, which are Pakistan and the United Kingdom. Results Results indicate that marine sediment carbon stocks in maritime nations can be similar in magnitude to those of soils. Therefore, if human activities in these areas are managed, carbon stocks in the oceanic realm—particularly over continental margins—could be considered as part of national GHG inventories. Conclusions This study shows that marine sediment organic carbon stocks can be equal in size or exceed terrestrial carbon stocks of maritime nations. This provides motivation both for improved assessment of sedimentary carbon inventories and for reevaluation of the way that carbon stocks are assessed and valued. The

Evaluation of thermal optical analysis method of elemental carbon for marine fuel exhaust.

Science.gov (United States)

Lappi, Maija K; Ristimäki, Jyrki M

2017-12-01

The awareness of black carbon (BC) as the second largest anthropogenic contributor in global warming and an ice melting enhancer has increased. Due to prospected increase in shipping especially in the Arctic reliability of BC emissions and their invented amounts from ships is gaining more attention. The International Maritime Organization (IMO) is actively working toward estimation of quantities and effects of BC especially in the Arctic. IMO has launched work toward constituting a definition for BC and agreeing appropriate methods for its determination from shipping emission sources. In our study we evaluated the suitability of elemental carbon (EC) analysis by a thermal-optical transmittance (TOT) method to marine exhausts and possible measures to overcome the analysis interferences related to the chemically complex emissions. The measures included drying with CaSO 4, evaporation at 40-180ºC, H 2 O treatment, and variation of the sampling method (in-stack and diluted) and its parameters (e.g., dilution ratio, Dr). A reevaluation of the nominal organic carbon (OC)/EC split point was made. Measurement of residual carbon after solvent extraction (TC-C SOF ) was used as a reference, and later also filter smoke number (FSN) measurement, which is dealt with in a forthcoming paper by the authors. Exhaust sources used for collecting the particle sample were mainly four-stroke marine engines operated with variable loads and marine fuels ranging from light to heavy fuel oils (LFO and HFO) with a sulfur content range of carbon (PyC) from OC, affecting the accuracy of EC determination. Thus, uncertainty remained regarding the EC results from HFO fuels. The work supports one part of the decision making in black carbon (BC) determination methodology. If regulations regarding BC emissions from marine engines will be implemented in the future, a well-defined and at best unequivocal method of BC determination is required for coherent and comparable emission inventories and

Phosphorus sorption on marine carbonate sediment: phosphonate as model organic compounds.

Science.gov (United States)

Huang, Xiao-Lan; Zhang, Jia-Zhong

2011-11-01

Organophosphonate, characterized by the presence of a stable, covalent, carbon to phosphorus (C-P) bond, is a group of synthetic or biogenic organophosphorus compounds. The fate of these organic phosphorus compounds in the environment is not well studied. This study presents the first investigation on the sorption of phosphorus (P) in the presence of two model phosphonate compounds, 2-aminothylphosphonoic acid (2-AEP) and phosphonoformic acid (PFA), on marine carbonate sediments. In contrast to other organic P compounds, no significant inorganic phosphate exchange was observed in seawater. P was found to adsorb on the sediment only in the presence of PFA, not 2-AEP. This indicated that sorption of P from phosphonate on marine sediment was compound specific. Compared with inorganic phosphate sorption on the same sediments, P sorption from organic phosphorus is much less in the marine environment. Further study is needed to understand the potential role of the organophosphonate compounds in biogeochemical cycle of phosphorus in the environment. Copyright © 2011 Elsevier Ltd. All rights reserved.

Carbon conversion and metabolic rate in two marine sponges

NARCIS (Netherlands)

Koopmans, M.; Van Rijswijk, P.; Martens, D.; Egorova-Zachernyuk, T.A.; Middelburg, J.J.; Wijffels, R.H.

2011-01-01

The carbon metabolism of two marine sponges, Haliclona oculata and Dysidea avara, has been studied using a 13C isotope pulse-chase approach. The sponges were fed 13C-labeled diatoms (Skeletonema costatum) for 8 h and they took up between 75 and 85%. At different times, sponges were sampled for total

Comparison of marine macrophytes for their contributions to blue carbon sequestration.

Science.gov (United States)

Trevathan-Tackett, Stacey M; Kelleway, Jeffrey; Macreadie, Peter I; Beardall, John; Ralph, Peter; Bellgrove, Alecia

2015-11-01

Many marine ecosystems have the capacity for long-term storage of organic carbon (C) in what are termed "blue carbon" systems. While blue carbon systems (saltmarsh, mangrove, and seagrass) are efficient at long-term sequestration of organic carbon (C), much of their sequestered C may originate from other (allochthonous) habitats. Macroalgae, due to their high rates of production, fragmentation, and ability to be transported, would also appear to be able to make a significant contribution as C donors to blue C habitats. In order to assess the stability of macroalgal tissues and their likely contribution to long-term pools of C, we applied thermogravimetric analysis (TGA) to 14 taxa of marine macroalgae and coastal vascular plants. We assessed the structural complexity of multiple lineages of plant and tissue types with differing cell wall structures and found that decomposition dynamics varied significantly according to differences in cell wall structure and composition among taxonomic groups and tissue function (photosynthetic vs. attachment). Vascular plant tissues generally exhibited greater stability with a greater proportion of mass loss at temperatures > 300 degrees C (peak mass loss -320 degrees C) than macroalgae (peak mass loss between 175-300 degrees C), consistent with the lignocellulose matrix of vascular plants. Greater variation in thermogravimetric signatures within and among macroalgal taxa, relative to vascular plants, was also consistent with the diversity of cell wall structure and composition among groups. Significant degradation above 600 degrees C for some macroalgae, as well as some belowground seagrass tissues, is likely due to the presence of taxon-specific compounds. The results of this study highlight the importance of the lignocellulose matrix to the stability of vascular plant sources and the potentially significant role of refractory, taxon-specific compounds (carbonates, long-chain lipids, alginates, xylans, and sulfated

Enhancement of orimulsion biodegradation through the addition of natural marine carbon substrates

Energy Technology Data Exchange (ETDEWEB)

Proctor, L.M.; Toy, E.; Lapham, L.; Cherrier, J.; Chanton, J.P. [Florida State University, Tallahassee, FL (USA). Dept. of Oceanography

2001-04-01

Orimulsion is a bitumen-based heavy fuel that is a less expensive alternative to traditional fuel oils. However, because its density is intermediate between that of freshwater and seawater, in the event of a spill, the fuel could strand in the sediments. Previous work indicated that only 0.6 - 2.7% of the bitumen would degrade in long incubations of marine sediments. Various natural carbon substrates were added to stimulate the degradation of bitumen by native populations of benthic bacteria. The concentration and carbon isotopic signature of the respired carbon dioxide was measured to partition the substrates that supported bacterial respiration. It was found that the addition of seagrass and pinfish stimulated the degradation of bitumen by as much as 2 to 9-fold relative to incubations without these substrates. Biodegradation of bitumen may be enhanced by the addition of natural marine carbon substrates and may be a useful approach for bioremediation. Preadaption of the bacteria to bitumen did not significantly enhance their ability to degrade it. 13 refs., 5 figs., 2 tab.

Marine atmospheric corrosion of carbon steels

Directory of Open Access Journals (Sweden)

Morcillo, Manuel

2015-06-01

Full Text Available Basic research on marine atmospheric corrosion of carbon steels is a relatively young scientific field and there continue to be great gaps in this area of knowledge. The presence of akaganeite in the corrosion products that form on steel when it is exposed to marine atmospheres leads to a notable increase in the corrosion rate. This work addresses the following issues: (a environmental conditions necessary for akaganeite formation; (b characterisation of akaganeite in the corrosion products formed; (c corrosion mechanisms of carbon steel in marine atmospheres; (d exfoliation of rust layers formed in highly aggressive marine atmospheres; (e long-term corrosion rate prediction; and (f behaviour of weathering steels. Field research has been carried out at Cabo Vilano wind farm (Camariñas, Galicia in a wide range of atmospheric salinities and laboratory work involving the use of conventional atmospheric corrosion techniques and near-surface and bulk sensitive analytical techniques: scanning electron microscopy (SEM/energy dispersive spectrometry (EDS, X-ray diffraction (XRD, Mössbauer spectroscopy and SEM/μRaman spectroscopy.La investigación fundamental en corrosión atmosférica marina de aceros al carbono es un campo científico relativamente joven que presenta grandes lagunas de conocimiento. La formación de akaganeíta en los productos de corrosión que se forman sobre el acero cuando se expone a atmósferas marinas conduce a un incremento notable de la velocidad de corrosión. En el trabajo se abordan las siguientes cuestiones: (a condiciones ambientales necesarias para la formación de akaganeíta, (b caracterización de la akaganeíta en los productos de corrosión formados, (c mecanismos de corrosión del acero al carbono en atmósferas marinas, (d exfoliación de las capas de herrumbre formadas en atmósferas marinas muy agresivas, (e predicción de la velocidad de corrosión a largo plazo, y (f comportamiento de aceros patinables. La

The Stable Isotope Fractionation of Abiotic Reactions: A Benchmark in the Detection of Life

Science.gov (United States)

Summers, David P.

2003-01-01

One very important tool in the analysis of biogenic, and potentially biogenic, samples is the study of their stable isotope distributions. The isotope distribution of a sample depends on the process(es) that created it. One important application of the analysis of C & N stable isotope ratios has been in the determination of whether organic matter in a sample is of biological origin or was produced abiotically. For example, the delta C-13 of organic material found embedded in phosphate grains was cited as a critical part of the evidence for life in 3.8 billion year old samples. The importance of such analysis in establishing biogenicity was highlighted again by the role this issue played in the recent debate over the validity of what had been accepted as the Earth s earliest microfossils. These kinds of analysis imply a comparison with the fractionation that one would have seen if the organic material had been produced by alternative, abiotic, pathways. Could abiotic reactions account for the same level of fractionation? Additionally, since the fractionation can vary between different abiotic reactions, understanding their fractionations can be important in distinguishing what reactions may have been significant in the formation of different abiological samples (such as extraterrestrial samples). There is however, a scarcity of data on the fractionation of carbon and nitrogen by abiotic reactions. In order to interpret properly what the stable isotope ratios of samples tell us about their biotic or abiotic nature, more needs to be known about how abiotic reactions fractionate C and N. Carbon isotope fractionations have been studied for a few abiotic processes. These studies presumed the presence of a reducing atmosphere, focusing on reactions involving spark discharge, W photolysis of reducing gas mixtures, and cyanide polymerization in the presence of ammonia. They did find that the initial products showed a depletion in I3C with values in the range of a few per

Tectonic and environmental factors controlling on the evolution of Oligo-Miocene shallow marine carbonate factories along a tropical SE Circum-Caribbean

Science.gov (United States)

Silva-Tamayo, J. C.; Lara, M. E.; Nana Yobo, L.; Erdal, Y. D.; Sanchez, J.; Zapata-Ramirez, P. A.

2017-10-01

The evolution of the Cenozoic Circum-Caribbean shallow marine carbonate factories and ecosystems has been for long attributed to major global climatic and environmental changes. Although temporal variations in the Cenozoic shallow marine carbonate factories in this region seem to follow global trends, the potential effects of regional processes, such tectonic activity and local environmental change, on the evolution of the shallow marine carbonate factories are not well established. Here we present detailed sedimentologic and stratigraphic information from Middle Oligocene - Middle Miocene (Chattian-Burdigalian) shallow marine carbonate successions of the Siamana Formation in the Cocinetas sub-basin, Alta Guajira Basin, Guajira Peninsula, northern Colombia. We document the potential effects of regional tectonics and local environmental deterioration on the evolution of the Oligocene-Miocene tropical shallow marine carbonate factories along the SE Circum-Caribbean. Our results show that mixed heterozoan-photozoan biotic associations dominated the shallow marine carbonate factories during the Chattian, while purely photozoan biotic associations constituted the primary carbonate factory during the Aquitanian-Burdigalian transition. The Chattian mixed heterozoan/photozoan biotic association is associated with the development of mixed carbonate/siliciclastic shelves along which detached patchy reef areas occur. The onset of the Aquitanian-Burdigalian purely photozoan biotic associations parallels the increase in coral diversity as well as the occurence of rimmed/detached carbonate platforms in the northern part of the basin. The development of the rimmed/detached platforms coincides with a time of increased basin subsidence and increased silicilcastic input along the southernmost part of the basin. A significant change in the carbonate factory occurs in the Late Burdigalian, when purely heterozoan (rodalgal) biotic associations constituted the main shallow marine

Marine Atmospheric Corrosion of Carbon Steel: A Review

OpenAIRE

Alc?ntara, Jenifer; de la Fuente, Daniel; Chico, Bel?n; Simancas, Joaqu?n; D?az, Iv?n; Morcillo, Manuel

2017-01-01

The atmospheric corrosion of carbon steel is an extensive topic that has been studied over the years by many researchers. However, until relatively recently, surprisingly little attention has been paid to the action of marine chlorides. Corrosion in coastal regions is a particularly relevant issue due the latter’s great importance to human society. About half of the world’s population lives in coastal regions and the industrialisation of developing countries tends to concentrate production pl...

Phase equilibrium condition of marine carbon dioxide hydrate

International Nuclear Information System (INIS)

Sun, Shi-Cai; Liu, Chang-Ling; Ye, Yu-Guang

2013-01-01

Highlights: ► CO 2 hydrate phase equilibrium was studied in simulated marine sediments. ► CO 2 hydrate equilibrium temperature in NaCl and submarine pore water was depressed. ► Coarse-grained silica sand does not affect CO 2 hydrate phase equilibrium. ► The relationship between equilibrium temperature and freezing point was discussed. - Abstract: The phase equilibrium of ocean carbon dioxide hydrate should be understood for ocean storage of carbon dioxide. In this paper, the isochoric multi-step heating dissociation method was employed to investigate the phase equilibrium of carbon dioxide hydrate in a variety of systems (NaCl solution, submarine pore water, silica sand + NaCl solution mixture). The experimental results show that the depression in the phase equilibrium temperature of carbon dioxide hydrate in NaCl solution is caused mainly by Cl − ion. The relationship between the equilibrium temperature and freezing point in NaCl solution was discussed. The phase equilibrium temperature of carbon dioxide hydrate in submarine pore water is shifted by −1.1 K to lower temperature region than that in pure water. However, the phase equilibrium temperature of carbon dioxide hydrate in mixture samples of coarsed-grained silica sand and NaCl solution is in agreement with that in NaCl solution with corresponding concentrations. The relationship between the equilibrium temperature and freezing point in mixture samples was also discussed.

A carbon isotope budget for an anoxic marine sediment

International Nuclear Information System (INIS)

Boehme, S.E.; Blair, N.E.

1991-01-01

A carbon isotope budget has been determined for the coastal marine site, Cape Lookout Bight, NC. Isotope measurements of methane and σCO 2 fluxing out and buried in these sediments were applied to previously measured flux data (Martens et al., in press) to predict the isotopic composition of the incoming metabolizable organic matter. Methane leaves the sediment predominantly via ebullition with an isotopic composition of -60 per mil. Less than 2% of the methane produced is buried with an average diffusional flux value of -17 per mil and a burial value of +11 per mil. The isotope budget predicts a metabolizable organic carbon isotope signature of -19.3 per mil which is in excellent agreement with the measured total organic carbon value of -19.2 ± 0.3 per mil implying that the dominant remineralization processes have been identified

Optimizing sample pretreatment for compound-specific stable carbon isotopic analysis of amino sugars in marine sediment

Science.gov (United States)

Zhu, R.; Lin, Y.-S.; Lipp, J. S.; Meador, T. B.; Hinrichs, K.-U.

2014-09-01

Amino sugars are quantitatively significant constituents of soil and marine sediment, but their sources and turnover in environmental samples remain poorly understood. The stable carbon isotopic composition of amino sugars can provide information on the lifestyles of their source organisms and can be monitored during incubations with labeled substrates to estimate the turnover rates of microbial populations. However, until now, such investigation has been carried out only with soil samples, partly because of the much lower abundance of amino sugars in marine environments. We therefore optimized a procedure for compound-specific isotopic analysis of amino sugars in marine sediment, employing gas chromatography-isotope ratio mass spectrometry. The whole procedure consisted of hydrolysis, neutralization, enrichment, and derivatization of amino sugars. Except for the derivatization step, the protocol introduced negligible isotopic fractionation, and the minimum requirement of amino sugar for isotopic analysis was 20 ng, i.e., equivalent to ~8 ng of amino sugar carbon. Compound-specific stable carbon isotopic analysis of amino sugars obtained from marine sediment extracts indicated that glucosamine and galactosamine were mainly derived from organic detritus, whereas muramic acid showed isotopic imprints from indigenous bacterial activities. The δ13C analysis of amino sugars provides a valuable addition to the biomarker-based characterization of microbial metabolism in the deep marine biosphere, which so far has been lipid oriented and biased towards the detection of archaeal signals.

Sm-Nd in marine carbonates and phosphates: implications for Nd isotopes in seawater and crustal ages

International Nuclear Information System (INIS)

Shaw, H.F.; Wasserburg, G.J.

1985-01-01

This study explores the possibility of establishing Nd isotopic variations in seawater over geologic time. Calcite, aragonite and apatite are examined as possible phases recording seawater values of epsilonsubNd. Modern, biogenic and inorganically precipitated calcite and aragonite from marine environments were found to have Nd concentrations of from 0.2 to 70 ppb, showing that primary marine CaCO 3 contains little REE and that Nd/Ca is not greatly enhanced relative to seawater during carbonate precipitation. Very young marine limestone and dolomite containing no continental detritus have approx. 200 ppb Nd. All the carbonates are LREE enriched. Modern and very young Atlantic and Pacific carbonates have epsilonsub(Nd) in the range of shallow Atlantic and Pacific seawater respectively, implying that they derive their REE from local seawater. The Nd in well preserved carbonate fossils is 4 ppb, much greater than in their modern counterparts but like the high values found for carbonates in other studies. Results are also reported for apatite. They suggest that sedimentary apatite can be used to determine epsilonsub(Nd)(T) in ancient seawater. The seawater values so inferred range between -1.7 and -8.9 over the last 700 my and lie in the range of modern seawater, showing no evidence for drastic changes. (U.K.)

Activated carbon derived from marine Posidonia Oceanica for electric energy storage

Directory of Open Access Journals (Sweden)

N. Boukmouche

2014-07-01

Full Text Available In this paper, the synthesis and characterization of activated carbon from marine Posidonia Oceanica were studied. The activated carbon was prepared by a simple process namely pyrolysis under inert atmosphere. The activated carbon can be used as electrodes for supercapacitor devices. X-ray diffraction result revealed a polycrystalline graphitic structure. While scanning electron microscope investigation showed a layered structure with micropores. The EDS analysis showed that the activated carbon contains the carbon element in high atomic percentage. Electrochemical impedance spectroscopy revealed a capacitive behavior (electrostatic phenomena. The specific capacity per unit area of the electrochemical double layer of activated carbon electrode in sulfuric acid electrolyte was 3.16 F cm−2. Cyclic voltammetry and galvanostatic chronopotentiometry demonstrated that the electrode has excellent electrochemical reversibility. It has been found that the surface capacitance was strongly related to the specific surface area and pore size.

Carbon sequestration.

Science.gov (United States)

Lal, Rattan

2008-02-27

Developing technologies to reduce the rate of increase of atmospheric concentration of carbon dioxide (CO2) from annual emissions of 8.6PgCyr-1 from energy, process industry, land-use conversion and soil cultivation is an important issue of the twenty-first century. Of the three options of reducing the global energy use, developing low or no-carbon fuel and sequestering emissions, this manuscript describes processes for carbon (CO2) sequestration and discusses abiotic and biotic technologies. Carbon sequestration implies transfer of atmospheric CO2 into other long-lived global pools including oceanic, pedologic, biotic and geological strata to reduce the net rate of increase in atmospheric CO2. Engineering techniques of CO2 injection in deep ocean, geological strata, old coal mines and oil wells, and saline aquifers along with mineral carbonation of CO2 constitute abiotic techniques. These techniques have a large potential of thousands of Pg, are expensive, have leakage risks and may be available for routine use by 2025 and beyond. In comparison, biotic techniques are natural and cost-effective processes, have numerous ancillary benefits, are immediately applicable but have finite sink capacity. Biotic and abiotic C sequestration options have specific nitches, are complementary, and have potential to mitigate the climate change risks.

Application of carbon isotope stratigraphy to late miocene shallow marine sediments, new zealand.

Science.gov (United States)

Loutit, T S; Kennett, J P

1979-06-15

A distinct (0.5 per mil) carbon-13/carbon-12 isotopic shift in the light direction has been identified in a shallow marine sedimentary sequence of Late Miocene age at Blind River, New Zealand, and correlated with a similar shift in Late Miocene Deep Sea Drilling Project sequences throughout the Indo-Pacific. A dated piston core provides an age for the shift of 6.2 +/- 0.1 million years. Correlations based on the carbon isotopic change require a revision of the previously established magnetostratigraphy at Blind River. The carbon shift at Blind River occurs between 6.2 and 6.3 +/- 0.1 million years before present. A new chronology provides an age for the evolutionary first appearance datum of Globorotalia conomiozea at 6.1 +/- 0.1 million years, the beginning of a distinct latest Miocene cooling event associated with the Kapitean stage at 6.2 +/- 0.1 million years, and the beginning of a distinct shallowing of water depths at 6.1 +/- 0.1 million years. The Miocene-Pliocene boundary as recognized in New Zealand is now dated at 5.3 +/- 0.1 million years. Extension of carbon isotope stratigraphy to other shallow Late Miocene sequences should provide an important datum for international correlation of Late Miocene shallow and deep marine sequences.

Mineralogy, early marine diagenesis, and the chemistry of shallow-water carbonate sediments

Science.gov (United States)

Higgins, J. A.; Blättler, C. L.; Lundstrom, E. A.; Santiago-Ramos, D. P.; Akhtar, A. A.; Crüger Ahm, A.-S.; Bialik, O.; Holmden, C.; Bradbury, H.; Murray, S. T.; Swart, P. K.

2018-01-01

Shallow-water carbonate sediments constitute the bulk of sedimentary carbonates in the geologic record and are widely used archives of Earth's chemical and climatic history. One of the main limitations in interpreting the geochemistry of ancient carbonate sediments is the potential for post-depositional diagenetic alteration. In this study, we use paired measurements of calcium (44Ca/40Ca or δ44Ca) and magnesium (26Mg/24Mg or δ26Mg) isotope ratios in sedimentary carbonates and associated pore-fluids as a tool to understand the mineralogical and diagenetic history of Neogene shallow-water carbonate sediments from the Bahamas and southwest Australia. We find that the Ca and Mg isotopic composition of bulk carbonate sediments at these sites exhibits systematic stratigraphic variability that is related to both mineralogy and early marine diagenesis. The observed variability in bulk sediment Ca isotopes is best explained by changes in the extent and style of early marine diagenesis from one where the composition of the diagenetic carbonate mineral is determined by the chemistry of the fluid (fluid-buffered) to one where the composition of the diagenetic carbonate mineral is determined by the chemistry of the precursor sediment (sediment-buffered). Our results indicate that this process, together with variations in carbonate mineralogy (aragonite, calcite, and dolomite), plays a fundamental and underappreciated role in determining the regional and global stratigraphic expressions of geochemical tracers (δ13C, δ18O, major, minor, and trace elements) in shallow-water carbonate sediments in the geologic record. Our results also provide evidence that a large shallow-water carbonate sink that is enriched in 44Ca can explain the mismatch between the δ44/40Ca value of rivers and deep-sea carbonate sediments and call into question the hypothesis that the δ44/40Ca value of seawater depends on the mineralogy of primary carbonate precipitations (e.g. 'aragonite seas' and

Methane clumped isotopes in the Songliao Basin (China): New insights into abiotic vs. biotic hydrocarbon formation

Science.gov (United States)

Shuai, Yanhua; Etiope, Giuseppe; Zhang, Shuichang; Douglas, Peter M. J.; Huang, Ling; Eiler, John M.

2018-01-01

Abiotic hydrocarbon gas, typically generated in serpentinized ultramafic rocks and crystalline shields, has important implications for the deep biosphere, petroleum systems, the carbon cycle and astrobiology. Distinguishing abiotic gas (produced by chemical reactions like Sabatier synthesis) from biotic gas (produced from degradation of organic matter or microbial activity) is sometimes challenging because their isotopic and molecular composition may overlap. Abiotic gas has been recognized in numerous locations on the Earth, although there are no confirmed instances where it is the dominant source of commercially valuable quantities in reservoir rocks. The deep hydrocarbon reservoirs of the Xujiaweizi Depression in the Songliao Basin (China) have been considered to host significant amounts of abiotic methane. Here we report methane clumped-isotope values (Δ18) and the isotopic composition of C1-C3 alkanes, CO2 and helium of five gas samples collected from those Xujiaweizi deep reservoirs. Some geochemical features of these samples resemble previously suggested identifiers of abiotic gas (13C-enriched CH4; decrease in 13C/12C ratio with increasing carbon number for the C1-C4 alkanes; abundant, apparently non-biogenic CO2; and mantle-derived helium). However, combining these constraints with new measurements of the clumped-isotope composition of methane and careful consideration of the geological context, suggests that the Xujiaweizi depression gas is dominantly, if not exclusively, thermogenic and derived from over-mature source rocks, i.e., from catagenesis of buried organic matter at high temperatures. Methane formation temperatures suggested by clumped-isotopes (167-213 °C) are lower than magmatic gas generation processes and consistent with the maturity of local source rocks. Also, there are no geological conditions (e.g., serpentinized ultramafic rocks) that may lead to high production of H2 and thus abiotic production of CH4 via CO2 reduction. We propose

Changes in Eocene-Miocene shallow marine carbonate factories along the tropical SE Circum-Caribbean responded to major regional and global environmental and tectonic events

Science.gov (United States)

Silva-Tamayo, Juan Carlos

2015-04-01

Changes in the factory of Cenozoic tropical marine carbonates have been for long attributed to major variations on climatic and environmental conditions. Although important changes on the factories of Cenozoic Caribbean carbonates seem to have followed global climatic and environmental changes, the regional impact of such changes on the factories of shallow marine carbonate along the Caribbean is not well established. Moreover, the influence of transpressional tectonics on the occurrence, distribution and stratigraphy of shallow marine carbonate factories along this area is far from being well understood. Here we report detailed stratigraphic, petrographic and Sr-isotope chemostratigraphic information of several Eocene-Miocene carbonate successions deposited along the equatorial/tropical SE Circum-Caribbean (Colombia and Panama) from which we further assess the influence of changing environmental conditions, transtentional tectonics and sea level change on the development of the shallow marine carbonate factories. Our results suggest that during the Eocene-early Oligocene interval, a period of predominant high atmospheric pCO2, coralline algae constitute the principal carbonate builders of shallow marine carbonate successions along the SE Circum-Caribbean. Detailed stratigraphic and paragenetic analyses suggest the developed of laterally continuous red algae calcareous build-ups along outer-rimmed carbonate platforms. The predominance of coralline red algae over corals on the shallow marine carbonate factories was likely related to high sea surface temperatures and high turbidity. The occurrence of such build-ups was likely controlled by pronounce changes in the basin paleotopography, i.e. the occurrence of basement highs and lows, resulting from local transpressional tectonics. The occurrence of these calcareous red algae dominated factories was also controlled by diachronic opening of different sedimentary basins along the SE Circum Caribbean resulting from

Energy harvesting by implantable abiotically catalyzed glucose fuel cells

Science.gov (United States)

Kerzenmacher, S.; Ducrée, J.; Zengerle, R.; von Stetten, F.

Implantable glucose fuel cells are a promising approach to realize an autonomous energy supply for medical implants that solely relies on the electrochemical reaction of oxygen and glucose. Key advantage over conventional batteries is the abundant availability of both reactants in body fluids, rendering the need for regular replacement or external recharging mechanisms obsolete. Implantable glucose fuel cells, based on abiotic catalysts such as noble metals and activated carbon, have already been developed as power supply for cardiac pacemakers in the late-1960s. Whereas, in vitro and preliminary in vivo studies demonstrated their long-term stability, the performance of these fuel cells is limited to the μW-range. Consequently, no further developments have been reported since high-capacity lithium iodine batteries for cardiac pacemakers became available in the mid-1970s. In recent years research has been focused on enzymatically catalyzed glucose fuel cells. They offer higher power densities than their abiotically catalyzed counterparts, but the limited enzyme stability impedes long-term application. In this context, the trend towards increasingly energy-efficient low power MEMS (micro-electro-mechanical systems) implants has revived the interest in abiotic catalysts as a long-term stable alternative. This review covers the state-of-the-art in implantable abiotically catalyzed glucose fuel cells and their development since the 1960s. Different embodiment concepts are presented and the historical achievements of academic and industrial research groups are critically reviewed. Special regard is given to the applicability of the concept as sustainable micro-power generator for implantable devices.

Petroleum geological features and exploration prospect of deep marine carbonate rocks in China onshore: A further discussion

Directory of Open Access Journals (Sweden)

Zhao Wenzhi

2014-10-01

Full Text Available Deep marine carbonate rocks have become one of the key targets of onshore oil and gas exploration and development for reserves replacement in China. Further geological researches of such rocks may practically facilitate the sustainable, steady and smooth development of the petroleum industry in the country. Therefore, through a deep investigation into the fundamental geological conditions of deep marine carbonate reservoirs, we found higher-than-expected resource potential therein, which may uncover large oil or gas fields. The findings were reflected in four aspects. Firstly, there are two kinds of hydrocarbon kitchens which were respectively formed by conventional source rocks and liquid hydrocarbons cracking that were detained in source rocks, and both of them can provide large-scale hydrocarbons. Secondly, as controlled by the bedding and interstratal karstification, as well as the burial and hydrothermal dolomitization, effective carbonate reservoirs may be extensively developed in the deep and ultra-deep strata. Thirdly, under the coupling action of progressive burial and annealing heating, some marine source rocks could form hydrocarbon accumulations spanning important tectonic phases, and large quantity of liquid hydrocarbons could be kept in late stage, contributing to rich oil and gas in such deep marine strata. Fourthly, large-scale uplifts were formed by the stacking of multi-episodic tectonism and oil and gas could be accumulated in three modes (i.e., stratoid large-area reservoir-forming mode of karst reservoirs in the slope area of uplift, back-flow type large-area reservoir-forming mode of buried hill weathered crust karst reservoirs, and wide-range reservoir-forming mode of reef-shoal reservoirs; groups of stratigraphic and lithologic traps were widely developed in the areas of periclinal structures of paleohighs and continental margins. In conclusion, deep marine carbonate strata in China onshore contain the conditions for

Quantification of the carbonaceous matter origin in submicron marine aerosol particles by dual carbon isotope analysis

Science.gov (United States)

Ceburnis, D.; Garbaras, A.; Szidat, S.; Rinaldi, M.; Fahrni, S.; Perron, N.; Wacker, L.; Leinert, S.; Remeikis, V.; Facchini, M. C.; Prevot, A. S. H.; Jennings, S. G.; O'Dowd, C. D.

2011-01-01

Dual carbon isotope analysis has been performed for the first time demonstrating a potential in organic matter apportionment between three principal sources: marine, terrestrial (non-fossil) and fossil fuel due to unique isotopic signatures. The results presented here, utilising combinations of dual carbon isotope analysis, provides a conclusive evidence of a dominant biogenic organic fraction to organic aerosol over biologically active oceans. In particular, the NE Atlantic, which is also subjected to notable anthropogenic influences via pollution transport processes, was found to contain 80% organic aerosol matter of biogenic origin directly linked to plankton emissions. The remaining carbonaceous aerosol was of fossil-fuel origin. By contrast, for polluted air advecting out from Europe into the NE Atlantic, the source apportionment is 30% marine biogenic, 40% fossil fuel, and 30% continental non-fossil fuel. The dominant marine organic aerosol source in the atmosphere has significant implications for climate change feedback processes.

Latitudinal gradients in degradation of marine dissolved organic carbon

DEFF Research Database (Denmark)

Arnosti, Carol; Steen, Andrew; Ziervogel, Kai

2011-01-01

unknown, since the vast majority of marine bacteria have not been isolated in culture, and most measurements of DOC degradation rates have focused on uptake and metabolism of either bulk DOC or of simple model compounds (e.g. specific amino acids or sugars). Genomic investigations provide information......Heterotrophic microbial communities cycle nearly half of net primary productivity in the ocean, and play a particularly important role in transformations of dissolved organic carbon (DOC). The specific means by which these communities mediate the transformations of organic carbon are largely...... about the potential capabilities of organisms and communities but not the extent to which such potential is expressed. We tested directly the capabilities of heterotrophic microbial communities in surface ocean waters at 32 stations spanning latitudes from 76 ºS to 79 ºN to hydrolyze a range of high...

Stable carbon isotope analysis to distinguish biotic and abiotic degradation of 1,1,1-trichloroethane in groundwater sediments

DEFF Research Database (Denmark)

Broholm, Mette Martina; Hunkeler, Daniel; Tuxen, Nina

2014-01-01

not appear to be reductive dechlorination via 1,1-DCA. In the biotic microcosms, the degradation of 1,1,1-TCA occurred under iron and sulfate reducing conditions. Biotic reduction of iron and sulfate likely resulted in formation of FeS, which can abiotically degrade 1,1,1-TCA. Hence, abiotic degradation of 1...

Evidence of rock matrix back-diffusion and abiotic dechlorination using a field testing approach

Science.gov (United States)

Schaefer, Charles E.; Lippincott, David R.; Klammler, Harald; Hatfield, Kirk

2018-02-01

An in situ field demonstration was performed in fractured rock impacted with trichloroethene (TCE) and cis-1,2-dichloroethene (DCE) to assess the impacts of contaminant rebound after removing dissolved contaminants within hydraulically conductive fractures. Using a bedrock well pair spaced 2.4 m apart, TCE and DCE were first flushed with water to create a decrease in dissolved contaminant concentrations. While hydraulically isolating the well pair from upgradient contaminant impacts, contaminant rebound then was observed between the well pair over 151 days. The magnitude, but not trend, of TCE rebound was reasonably described by a matrix back-diffusion screening model that employed an effective diffusion coefficient and first-order abiotic TCE dechlorination rate constant that was based on bench-scale testing. Furthermore, a shift in the TCE:DCE ratio and carbon isotopic enrichment was observed during the rebound, suggesting that both biotic and abiotic dechlorination were occurring within the rock matrix. The isotopic data and back-diffusion model together served as a convincing argument that matrix back-diffusion was the mechanism responsible for the observed contaminant rebound. Results of this field demonstration highlight the importance and applicability of rock matrix parameters determined at the bench-scale, and suggest that carbon isotopic enrichment can be used as a line of evidence for abiotic dechlorination within rock matrices.

Radioactive monitoring of the marine environment

International Nuclear Information System (INIS)

Bologa, A. S.

1991-01-01

Radioactivity monitoring of marine environment was required by the development of nuclear power and the worldwide use of ionizing radiations in many different activities. Both natural and artificial radioactivity play an important role in marine ecology and human health. In respect of this, three major facts prevail, namely: the fallout, the proximity of Danube River and the future nuclear power production. Spatial and temporal monitoring of marine radioactivity along the Romanian Black Sea shore has been systematically performed in Romanian Marine Research Institute in close cooperation with Institute of Meteorology and Hydrology since 1981. Marine emerged and submerged sediments, coastal and offshore sea water, macroalgae, invertebrates and fish of Danube mouths and/or along the coast are monitored for natural and artificial radioactivity by means of gross beta measurements and gamma spectrometry. Concentrations of radionuclides such as: K-40, Cs-134 and Cs-137 in abiotic and biotic samples, environmental distribution coefficients and concentration factors (CFs) as well as experimentally derived CFs in marine biota as radioecological bioindicators are assessed and stored in a national data base. (author)

Photosynthesis, respiration, and carbon turnover in sinking marine snow from surface waters of Southern California Bight: implications for the carbon cycle in the ocean

DEFF Research Database (Denmark)

Ploug, H.; Grossart, HP; Azam, F.

1999-01-01

aggregate in darkness, which yielded a turnover time of 8 to 9 d for the total organic carbon in aggregates. Thus, marine snow is not only a vehicle for vertical flux of organic matter; the aggregates are also hotspots of microbial respiration which cause a fast and efficient respiratory turnover...... of particulate organic carbon in the sea....

Nitrogen and carbon isotopic composition of bone collagen from marine and terrestrial animals

International Nuclear Information System (INIS)

Schoeninger, M.J.; DeNiro, M.J.

1984-01-01

The stable nitrogen and carbon isotope ratios of bone collagen prepared from more than 100 animals representing 66 species of birds, fish, and mammals are presented. The delta 15 N values of bone collagen from animals that fed exclusively in the marine environment are, on average, 9 per mille more positive than those from animals that fed exclusively in the terrestrial environment: ranges for the two groups overlap by less than 1 per mille. Bone collagen delta 15 N values also serve to separate marine fish from the small number of freshwater fish we analyzed. The bone collagen delta 15 N values of birds and fish that spent part of their life cycles feeding in the marine environment and part in the freshwater environment are intermediate between those of animals that fed exclusively in one or the other system. Further, animals that fed at successive trophic levels in the marine and terrestrial environment are separated, on average, by a 3 per mille difference in the delta 15 N values of their bone collagen. Results are given and discussed. (author)

A terrestrial Eocene stack: tying terrestrial lake ecology to marine carbon cycling through the Early Eocene Climatic Optimum

Science.gov (United States)

Grogan, D. S.; Whiteside, J. H.; Musher, D.; Rosengard, S. Z.; Vankeuren, M. A.; Pancost, R. D.

2010-12-01

The lacustrine Green River Formation is known to span ≥15 million years through the early-middle Eocene, and recent work on radioisotopic dating has provided a framework on which to build ties to the orbitally-tuned marine Eocene record. Here we present a spliced stack of Fischer assay data from drilled cores of the Green River Formation that span both an East-West and a North-South transect of the Uinta Basin of Utah. Detailed work on two cores demonstrate that Fischer assay measurements covary with total organic carbon and bulk carbon isotopes, allowing us to use Fisher assay results as a representative carbon cycling proxy throughout the stack. We provide an age model for this core record by combining radioisotopic dates of tuff layers with frequency analysis of Fischer assay measurements. Identification of orbital frequencies tied directly to magnetochrons through radioisotopic dates allows for a direct comparison of the terrestrial to the marine Eocene record. Our analysis indicates that the marker beds used to correlate the stack cores represent periods of enhanced lake productivity and extreme carbon burial; however, unlike the hyperthermal events that are clearly marked in the marine Eocene record, the hydrocarbon-rich "Mahogany Bed" period of burial does not correspond to a clear carbon isotope excursion. This suggests that the terrestrial realm may have experienced extreme ecological responses to relatively small perturbations in the carbon cycle during the Early Eocene Climatic Optimum. To investigate the ecological responses to carbon cycle perturbations through the hydrocarbon rich beds, we analyzed a suite of microbial biomarkers, finding evidence for cyanobacteria, dinoflagellates, and potentially green sulfur bacteria. These taxa indicate fluctuating oxic/anoxic conditions in the lake during abrupt intervals of carbon burial, suggesting a lake biogeochemical regime with no modern analogues.

Processes determining the marine alkalinity and calcium carbonate saturation state distributions

OpenAIRE

Carter, B. R.; Toggweiler, J. R.; Key, R. M.; Sarmiento, J. L.

2014-01-01

We introduce a composite tracer for the marine system, Alk*, that has a global distribution primarily determined by CaCO3 precipitation and dissolution. Alk* is also affected by riverine alkalinity from dissolved terrestrial carbonate minerals. We estimate that the Arctic receives approximately twice the riverine alkalinity per unit area as the Atlantic, and 8 times that of the other oceans. Riverine inputs broadly elevate Alk* in the Arctic surface and particularly near riv...

Evaluation and intercomparison of three-dimensional global marine carbon cycle models

Energy Technology Data Exchange (ETDEWEB)

Caldeira, K., LLNL

1998-07-01

-Reimer, 1990; Sarmiento et al., 1992, Najjar et al., 1992). These twin needs for the development of marine carbon cycle models are expressed in two of the main elements of JGOFS SMP: (1) extrapolation and prediction, and (2) global and regional balances of carbon and related biologically-active substances. We propose to address these program elements through a coordinated, multi-investigator project to evaluate and intercompare several 3-D global marine carbon cycle models.

Major role of marine vegetation on the oceanic carbon cycle

Directory of Open Access Journals (Sweden)

C. M. Duarte

2005-01-01

Full Text Available The carbon burial in vegetated sediments, ignored in past assessments of carbon burial in the ocean, was evaluated using a bottom-up approach derived from upscaling a compilation of published individual estimates of carbon burial in vegetated habitats (seagrass meadows, salt marshes and mangrove forests to the global level and a top-down approach derived from considerations of global sediment balance and a compilation of the organic carbon content of vegeatated sediments. Up-scaling of individual burial estimates values yielded a total carbon burial in vegetated habitats of 111 Tmol C y-1. The total burial in unvegetated sediments was estimated to be 126 Tg C y-1, resulting in a bottom-up estimate of total burial in the ocean of about 244 Tg C y-1, two-fold higher than estimates of oceanic carbon burial that presently enter global carbon budgets. The organic carbon concentrations in vegetated marine sediments exceeds by 2 to 10-fold those in shelf/deltaic sediments. Top-down recalculation of ocean sediment budgets to account for these, previously neglected, organic-rich sediments, yields a top-down carbon burial estimate of 216 Tg C y-1, with vegetated coastal habitats contributing about 50%. Even though vegetated carbon burial contributes about half of the total carbon burial in the ocean, burial represents a small fraction of the net production of these ecosystems, estimated at about 3388 Tg C y-1, suggesting that bulk of the benthic net ecosystem production must support excess respiration in other compartments, such as unvegetated sediments and the coastal pelagic compartment. The total excess organic carbon available to be exported to the ocean is estimated at between 1126 to 3534 Tg C y-1, the bulk of which must be respired in the open ocean. Widespread loss of vegetated coastal habitats must have reduced carbon burial in the ocean by about 30 Tg C y-1, identifying the destruction of these ecosystems as an important loss of CO

An Overview of Marine Biodiversity in United States Waters

Science.gov (United States)

Fautin, Daphne; Dalton, Penelope; Incze, Lewis S.; Leong, Jo-Ann C.; Pautzke, Clarence; Rosenberg, Andrew; Sandifer, Paul; Sedberry, George; Tunnell, John W.; Abbott, Isabella; Brainard, Russell E.; Brodeur, Melissa; Eldredge, Lucius G.; Feldman, Michael; Moretzsohn, Fabio; Vroom, Peter S.; Wainstein, Michelle; Wolff, Nicholas

2010-01-01

Marine biodiversity of the United States (U.S.) is extensively documented, but data assembled by the United States National Committee for the Census of Marine Life demonstrate that even the most complete taxonomic inventories are based on records scattered in space and time. The best-known taxa are those of commercial importance. Body size is directly correlated with knowledge of a species, and knowledge also diminishes with distance from shore and depth. Measures of biodiversity other than species diversity, such as ecosystem and genetic diversity, are poorly documented. Threats to marine biodiversity in the U.S. are the same as those for most of the world: overexploitation of living resources; reduced water quality; coastal development; shipping; invasive species; rising temperature and concentrations of carbon dioxide in the surface ocean, and other changes that may be consequences of global change, including shifting currents; increased number and size of hypoxic or anoxic areas; and increased number and duration of harmful algal blooms. More information must be obtained through field and laboratory research and monitoring that involve innovative sampling techniques (such as genetics and acoustics), but data that already exist must be made accessible. And all data must have a temporal component so trends can be identified. As data are compiled, techniques must be developed to make certain that scales are compatible, to combine and reconcile data collected for various purposes with disparate gear, and to automate taxonomic changes. Information on biotic and abiotic elements of the environment must be interactively linked. Impediments to assembling existing data and collecting new data on marine biodiversity include logistical problems as well as shortages in finances and taxonomic expertise. PMID:20689852

An overview of marine biodiversity in United States waters

Science.gov (United States)

Fautin, Daphne G.; Delton, Penelope; Incze, Lewis S.; Leong, Jo-Ann C.; Pautzke, Clarence; Rosenberg, Andrew A.; Sandifer, Paul; Sedberry, George R.; Tunnell, John W.; Abbott, Isabella; Brainard, Russell E.; Brodeur, Melissa; Eldredge, Lucius G.; Feldman, Michael; Moretzsohn, Fabio; Vroom, Peter S.; Wainstein, Michelle; Wolff, Nicholas

2010-01-01

Marine biodiversity of the United States (U.S.) is extensively documented, but data assembled by the United States National Committee for the Census of Marine Life demonstrate that even the most complete taxonomic inventories are based on records scattered in space and time. The best-known taxa are those of commercial importance. Body size is directly correlated with knowledge of a species, and knowledge also diminishes with distance from shore and depth. Measures of biodiversity other than species diversity, such as ecosystem and genetic diversity, are poorly documented. Threats to marine biodiversity in the U.S. are the same as those for most of the world: overexploitation of living resources; reduced water quality; coastal development; shipping; invasive species; rising temperature and concentrations of carbon dioxide in the surface ocean, and other changes that may be consequences of global change, including shifting currents; increased number and size of hypoxic or anoxic areas; and increased number and duration of harmful algal blooms. More information must be obtained through field and laboratory research and monitoring that involve innovative sampling techniques (such as genetics and acoustics), but data that already exist must be made accessible. And all data must have a temporal component so trends can be identified. As data are compiled, techniques must be developed to make certain that scales are compatible, to combine and reconcile data collected for various purposes with disparate gear, and to automate taxonomic changes. Information on biotic and abiotic elements of the environment must be interactively linked. Impediments to assembling existing data and collecting new data on marine biodiversity include logistical problems as well as shortages in finances and taxonomic expertise.

Carbon isotopes of dissolved inorganic carbon reflect utilization of different carbon sources by microbial communities in two limestone aquifer assemblages

Directory of Open Access Journals (Sweden)

M. E. Nowak

2017-08-01

Full Text Available Isotopes of dissolved inorganic carbon (DIC are used to indicate both transit times and biogeochemical evolution of groundwaters. These signals can be complicated in carbonate aquifers, as both abiotic (i.e., carbonate equilibria and biotic factors influence the δ13C and 14C of DIC. We applied a novel graphical method for tracking changes in the δ13C and 14C of DIC in two distinct aquifer complexes identified in the Hainich Critical Zone Exploratory (CZE, a platform to study how water transport links surface and shallow groundwaters in limestone and marlstone rocks in central Germany. For more quantitative estimates of contributions of different biotic and abiotic carbon sources to the DIC pool, we used the NETPATH geochemical modeling program, which accounts for changes in dissolved ions in addition to C isotopes. Although water residence times in the Hainich CZE aquifers based on hydrogeology are relatively short (years or less, DIC isotopes in the shallow, mostly anoxic, aquifer assemblage (HTU were depleted in 14C compared to a deeper, oxic, aquifer complex (HTL. Carbon isotopes and chemical changes in the deeper HTL wells could be explained by interaction of recharge waters equilibrated with post-bomb 14C sources with carbonates. However, oxygen depletion and δ13C and 14C values of DIC below those expected from the processes of carbonate equilibrium alone indicate considerably different biogeochemical evolution of waters in the upper aquifer assemblage (HTU wells. Changes in 14C and 13C in the upper aquifer complexes result from a number of biotic and abiotic processes, including oxidation of 14C-depleted OM derived from recycled microbial carbon and sedimentary organic matter as well as water–rock interactions. The microbial pathways inferred from DIC isotope shifts and changes in water chemistry in the HTU wells were supported by comparison with in situ microbial community structure based on 16S rRNA analyses. Our findings

Microbial decomposition of marine dissolved organic matter in cool oceanic crust

Science.gov (United States)

Shah Walter, Sunita R.; Jaekel, Ulrike; Osterholz, Helena; Fisher, Andrew T.; Huber, Julie A.; Pearson, Ann; Dittmar, Thorsten; Girguis, Peter R.

2018-05-01

Marine dissolved organic carbon (DOC) is one of the largest active reservoirs of reduced carbon on Earth. In the deep ocean, DOC has been described as biologically recalcitrant and has a radiocarbon age of 4,000 to 6,000 years, which far exceeds the timescale of ocean overturning. However, abiotic removal mechanisms cannot account for the full magnitude of deep-ocean DOC loss. Deep-ocean water circulates at low temperatures through volcanic crust on ridge flanks, but little is known about the associated biogeochemical processes and carbon cycling. Here we present analyses of DOC in fluids from two borehole observatories installed in crustal rocks west of the Mid-Atlantic Ridge, and show that deep-ocean DOC is removed from these cool circulating fluids. The removal mechanism is isotopically selective and causes a shift in specific features of molecular composition, consistent with microbe-mediated oxidation. We suggest organic molecules with an average radiocarbon age of 3,200 years are bioavailable to crustal microbes, and that this removal mechanism may account for at least 5% of the global loss of DOC in the deep ocean. Cool crustal circulation probably contributes to maintaining the deep ocean as a reservoir of `aged' and refractory DOC by discharging the surviving organic carbon constituents that are molecularly degraded and depleted in 14C and 13C into the deep ocean.

Biotic interactions reduce microbial carbon use efficiency

Science.gov (United States)

Bradford, M.; Maynard, D. S.

2017-12-01

The efficiency by which microbes decompose organic matter governs the amount of carbon that is retained in microbial biomass versus lost to the atmosphere as respiration. This carbon use efficiency (CUE) is affected by various abiotic conditions, such as temperature and nutrient availability. In biogeochemical model simulations, CUE is a key variable regulating how much soil carbon is stored or lost from ecosystems under simulated global changes, such as climate warming. Theoretically, the physiological costs of biotic interactions such as competition should likewise alter CUE, yet the direction and magnitude of these costs are untested. Here we conduct a microcosm experiment to quantify how competitive interactions among saprotrophic fungi alter growth, respiration, and CUE. Free-living decomposer fungi representing a broad range of traits and phylogenies were grown alone, in pairwise competition, and in multi-species (up to 15) communities. By combing culturing and stable carbon isotope approaches, we could resolve the amount of carbon substrate allocated to fungal biomass versus respiration, and so estimate CUE. By then comparing individual performance to community-level outcomes, we show that species interactions induce consistent declines in CUE, regardless of abiotic conditions. Pairwise competition lowers CUE by as much as 25%, with the magnitude of these costs equal to or greater than the observed variation across abiotic conditions. However, depending on the competitive network structure, increasing species richness led to consistent gains or declines in CUE. Our results suggest that the extent to which microbial-mediated carbon fluxes respond to environmental change may be influenced strongly by competitive interactions. As such, knowledge of abiotic conditions and community composition is necessary to confidently project CUE and hence ecosystem carbon dynamics.

Estimating marine biogeochemical rates of the carbonate pH system—A Kalman filter tested

NARCIS (Netherlands)

Soetaert, K.E.R.; Grégoire, M.

2011-01-01

Oxygen (O2), nitrate (NO3), dissolved inorganic carbon (DIC) or pCO2, and pH or total alkalinity (TA), are useful indices of marine chemical, physical and biological processes operating on varying time-scales. Although these properties are increasingly being monitored at high frequency, they have

Biological Carbon Dioxide Assimilation Process Using Marine Phytoplankton Tetraselmis suecica and Bivalve Perna viridis

Directory of Open Access Journals (Sweden)

Sirichai Dharmvanij

2012-01-01

Full Text Available The Biological CO2 assimilation process using marine phytoplankton and marine bivalve was evaluated by carbon assimilation of the green mussel Perna viridis fed with Tetraselmis suecica under laboratory condition. Incorporation of carbon dioxide into phytoplankton biomass was performed through aeration. The experiment consisted of three treatments i.e. mussels without feeding (Control, mussels fed with T. suecica cultured with air (Treatment 1: T-Air, and mussels fed with T. suecica cultured with 1.5% CO2 in air (Treatment 2: T-CO2. The results showed that growth of mussels in T-Air and T-CO2 was 22.4 ± 4.0 mg/individual/day and 28.9 ± 12.3 mg/individual/day, respectively, which was significantly higher than control (mussels without feeding. Growth of mussels in T-Air was significantly lower than in T-CO2. Carbon content in shell (15.59 ± 0.57 % D.W. and meat (38.28 ± 1.72 % D.W. of mussels fed with aerated T. suecica (T-Air was significantly higher than that found in mussels fed with 1.5% CO2 T. suecica (14.2 ± 0.47 and 36.61± 0.43 % D.W. in shell and in meat, respectively (p≤0.05. With T-Air, 1.95±0.27 and 9.36±1.24% of carbon from T. suecica cells was assimilated into shell and meat of the mussel, respectively, while in T-CO2 , carbon assimilation from T. suecica cells in shell and meat was 2.19±0.55 and 11.22±2.76% respectively.

Marine fouling release silicone/carbon nanotube nanocomposite coatings: on the importance of the nanotube dispersion state.

Science.gov (United States)

Beigbeder, Alexandre; Mincheva, Rosica; Pettitt, Michala E; Callow, Maureen E; Callow, James A; Claes, Michael; Dubois, Philippe

2010-05-01

The present work reports on the influence of the dispersion quality of multiwall carbon nanotubes (MWCNTs) in a silicone matrix on the marine fouling-release performance of the resulting nanocomposite coatings. A first set of coatings filled with different nanofiller contents was prepared by the dilution of a silicone/MWCNTs masterbatch within a hydrosilylation-curing polydimethylsiloxane resin. The fouling-release properties of the nanocomposite coatings were studied through laboratory assays with the marine alga (seaweed) Ulva, a common fouling species. As reported previously (see Ref. [19]), the addition of a small (0.05%) amount of carbon nanotubes substantially improves the fouling-release properties of the silicone matrix. This paper shows that this improvement is dependent on the amount of filler, with a maximum obtained with 0.1 wt% of multiwall carbon nanotubes (MWCNTs). The method of dispersion of carbon nanotubes in the silicone matrix is also shown to significantly (p = 0.05) influence the fouling-release properties of the coatings. Dispersing 0.1% MWCNTs using the masterbatch approach yielded coatings with circa 40% improved fouling-release properties over those where MWCNTs were dispersed directly in the polymeric matrix. This improvement is directly related to the state of nanofiller dispersion within the cross-linked silicone coating.

Sea surface temperature contributes to marine crocodylomorph evolution.

Science.gov (United States)

Martin, Jeremy E; Amiot, Romain; Lécuyer, Christophe; Benton, Michael J

2014-08-18

During the Mesozoic and Cenozoic, four distinct crocodylomorph lineages colonized the marine environment. They were conspicuously absent from high latitudes, which in the Mesozoic were occupied by warm-blooded ichthyosaurs and plesiosaurs. Despite a relatively well-constrained stratigraphic distribution, the varying diversities of marine crocodylomorphs are poorly understood, because their extinctions neither coincided with any major biological crises nor with the advent of potential competitors. Here we test the potential link between their evolutionary history in terms of taxic diversity and two abiotic factors, sea level variations and sea surface temperatures (SST). Excluding Metriorhynchoidea, which may have had a peculiar ecology, significant correlations obtained between generic diversity and estimated Tethyan SST suggest that water temperature was a driver of marine crocodylomorph diversity. Being most probably ectothermic reptiles, these lineages colonized the marine realm and diversified during warm periods, then declined or became extinct during cold intervals.

Monitoring of radioactivity in the marine environment

International Nuclear Information System (INIS)

Bologa, A.S.

1992-01-01

The necessity of radioactivity monitoring in the marine environment was imposed by the increasing development of nuclear power and its world-wide use in many different segments of economic and social life. Both natural and artificial radioactivity play an important role in marine ecology and human health. In this respect three major facts continue to prevail in Romania. The fallout, the presence of the Danube river and the expectations for future energy production. Spatial and temporal monitoring of marine radioactivity along the Romanian Black Sea shore has been systematically performed in the Romanian Marine Research Institute in close co-operation with the Institute of Meteorology and Hydrology since 1981. Marine emerged and submerged sediments, coastal and offshore sea water, macroalgae, in vertebrates and fish off the Danube mouths and/or along the coast are monitored for natural and artificial radioactivity by means of beta gross measurements and gamma spectrometry. Concentrations of radionuclides as K-40, Cs-134, Cs-137 in abiotic and biotic samples, environmental distributions coefficients and concentrations factors (CF), as well as experimentally-derived CFs in marine biota as radioecological bioindicators are assessed and stored for a national data base. (author) 3 tabs., 18 refs

Earth, wind, and fire: Abiotic factors and the impacts of global environmental change on forest health

Science.gov (United States)

J.E. Lundquist; A.E. Camp; M.L. Tyrell; S.J. Seybold; P. Cannon; D.J. Lodge

2011-01-01

Trees do not just die; there is always a primary cause, and often contributing factors. Trees need adequate quantities of water, heat, light, nutrients, carbon dioxide, oxygen, and other abiotic resources to sustain life, growth, and reproduction. When these factors are deficient or excessive, they cause mortality. According to the concept of baseline mortality (...

Biomineralization and the carbon isotope record

International Nuclear Information System (INIS)

Degens, E.T.; Ittekkot, V.; Kazmierczak, J.

1986-01-01

The advent of biomineralization at the turn of the Precambrian/Cambrian boundary has been a major event in the Earth's evolutionary history. With this there has been a major shift from abiotic to biotic formation of minerals such as phosphates and carbonates and, subsequently, silica. The dominant factor which effected this shift is a change in ocean's chemistry with respect to its Ca 2+ and mineral nutrient contents. Mechanism controlling the biotic mineral formation is different from that controlling the abiotic one in that the former is enzymically controlled. It is suggested that this difference is also manifested in the stable carbon isotope fractionation between the two processes and has implication for the interpretation of stable carbon isotope record. (Author)

Increased carbon uptake in marine sediment enabled by naturally occurring electrical conductors

Science.gov (United States)

Nielsen, M. E.; Cahoon, D. P.; Girguis, P. R.

2011-12-01

reveal that the majority of microbes in the sediment belong to the deltaproteobacteria or gammaproteobacteria classes, which have been previously implicated in EET in laboratory and field-based bioelectrochemical studies. These data force us to reconsider the role of EET and conductive minerals in organic carbon cycling -particularly in metaliferous sediments- and suggest that EET-enabled anaerobic metabolism may represent a significant contribution to marine carbon cycling.

The marine ecosystems at Forsmark and Laxemar-Simpevarp. SR-Site Biosphere

International Nuclear Information System (INIS)

Aquilonius, Karin

2010-12-01

mean for the Baltic Sea and slightly lower in Laxemar-Simpevarp. The sea level at Forsmark has since 2003 fluctuated between 0.6 m below and 1.3 m above the mean level, and the corresponding values for Laxemar-Simpevarp are 0.5 and 0.7 m. Due to the gentler slope of the coastline, the sea level fluctuations have a more marked effect in Forsmark, than in the Laxemar-Simpevarp landscape, exhibiting a steeper slope. In Forsmark the macrophyte vegetation in the photic zone is dominated by red algae and brown filamentous algae. In Laxemar-Simpevarp, the red algae community covers the largest area. The benthic biomass at the bottom sampling sites in Forsmark has been dominated by the Baltic mussel. In Laxemar-Simpevarp the sessile macro fauna attached to hard substrates is completely dominated by the blue mussel in terms of both biomass and abundance. Test fishing in Forsmark and Laxemar-Simpevarp show similar development as in other nearby coastal areas and herring and sprat are the dominant species in offshore areas at both sites. In the inner bays at the sites, perch and pike are the most frequent species. The biomass in Forsmark is dominated by the primary producers and is focused along the shoreline of the area. On average, the marine area in Forsmark shows a positive Net Ecosystem Production (NEP), although most of the area is heterotrophic. The coastal shallow basins tend to be autotrophic, whereas the more offshore basins are heterothropic. The largest carbon pool in all basins in Forsmark is the abiotic pools (i.e. sediment, DIC and DOC) followed by the macrophytes. The major carbon flux in the ecosystem is the advective flux caused by the movement of sea water. All biotic fluxes are small in comparison with the advective flux. The largest biotic flux is fixation of carbon by primary producers. On average 4% of the initially consumed carbon in the marine ecosystem food web is transferred to the top predators. For nitrogen, phosphorus and thorium, the major pool in

Carbon Capture and Storage (CCS): Risk assessment focused on marine bacteria.

Science.gov (United States)

Borrero-Santiago, A R; DelValls, T A; Riba, I

2016-09-01

Carbon capture and storage (CCS) is one of the options to mitigate the negative effects of the climate change. However, this strategy may have associated some risks such as CO2 leakages due to an escape from the reservoir. In this context, marine bacteria have been underestimated. In order to figure out the gaps and the lack of knowledge, this work summarizes different studies related to the potential effects on the marine bacteria associated with an acidification caused by a CO2 leak from CSS. An improved integrated model for risk assessment is suggested as a tool based on the rapid responses of bacterial community. Moreover, this contribution proposes a strategy for laboratory protocols using Pseudomona stanieri (CECT7202) as a case of study and analyzes the response of the strain under different CO2 conditions. Results showed significant differences (p≤0.05) under six diluted enriched medium and differences about the days in the exponential growth phase. Dilution 1:10 (Marine Broth 2216 with seawater) was selected as an appropriate growth medium for CO2 toxicity test in batch cultures. This work provide an essential and a complete tool to understand and develop a management strategy to improve future works related to possible effects produced by potential CO2 leaks. Copyright © 2016 Elsevier Inc. All rights reserved.

A synthesis of the arctic terrestrial and marine carbon cycles under pressure from a dwindling cryosphere

DEFF Research Database (Denmark)

Parmentier, Frans-Jan W; Christensen, Torben R; Rysgaard, Søren

2017-01-01

The current downturn of the arctic cryosphere, such as the strong loss of sea ice, melting of ice sheets and glaciers, and permafrost thaw, affects the marine and terrestrial carbon cycles in numerous interconnected ways. Nonetheless, processes in the ocean and on land have been too often...

Evaluating Late Cretaceous OAEs and the influence of marine incursions on organic carbon burial in an expansive East Asian paleo-lake

Science.gov (United States)

Jones, Matthew M.; Ibarra, Daniel E.; Gao, Yuan; Sageman, Bradley B.; Selby, David; Chamberlain, C. Page; Graham, Stephan A.

2018-02-01

Expansive Late Cretaceous lacustrine deposits of East Asia offer unique stratigraphic records to better understand regional responses to global climate events, such as oceanic anoxic events (OAEs), and terrestrial organic carbon burial dynamics. This study presents bulk organic carbon isotopes (δ13Corg), elemental concentrations (XRF), and initial osmium ratios (187Os/188Os, Osi) from the Turonian-Coniacian Qingshankou Formation, a ∼5 Ma lacustrine mudstone succession in the Songliao Basin of northeast China. A notable δ13Corg excursion (∼ + 2.5‰) in organic carbon-lean Qingshankou Members 2-3 correlates to OAE3 in the Western Interior Basin (WIB) of North America within temporal uncertainty of high-precision age models. Decreases in carbon isotopic fractionation (Δ13C) through OAE3 in the WIB and Songliao Basin, suggest that significantly elevated global rates of organic carbon burial drew down pCO2, likely cooling climate. Despite this, Osi chemostratigraphy demonstrates no major changes in global volcanism or weathering trends through OAE3. Identification of OAE3 in a lake system is consistent with lacustrine records of other OAEs (e.g., Toarcian OAE), and underscores that terrestrial environments were sensitive to climate perturbations associated with OAEs. Additionally, the relatively radiogenic Osi chemostratigraphy and XRF data confirm that the Qingshankou Formation was deposited in a non-marine setting. Organic carbon-rich intervals preserve no compelling Osi evidence for marine incursions, an existing hypothesis for generating Member 1's prolific petroleum source rocks. Based on our results, we present a model for water column stratification and source rock deposition independent of marine incursions, detailing dominant biogeochemical cycles and lacustrine organic carbon burial mechanisms.

Experimental Evidence for Abiotic Sulfurization of Marine Dissolved Organic Matter

Directory of Open Access Journals (Sweden)

Anika M. Pohlabeln

2017-11-01

Full Text Available Dissolved organic sulfur (DOS is the largest pool of organic sulfur in the oceans, and as such it is an important component of the global sulfur cycle. DOS in the ocean is resistant against microbial degradation and turns over on a millennium time scale. However, sources and mechanisms behind its stability are largely unknown. Here, we hypothesize that in sulfate-reducing sediments sulfur is abiotically incorporated into dissolved organic matter (DOM and released to the ocean. We exposed natural seawater and the filtrate of a plankton culture to sulfidic conditions. Already after 1-h at 20°C, DOS concentrations had increased 4-fold in these experiments, and 14-fold after 4 weeks at 50°C, indicating that organic matter does not need long residence times in natural sulfidic environments to be affected by sulfurization. Molecular analysis via ultrahigh-resolution mass spectrometry showed that sulfur was covalently and unselectively bound to DOM. Experimentally produced and natural DOS from sediments were highly similar on a molecular and structural level. By combining our data with published benthic DOC fluxes we estimate that 30–200 Tg DOS are annually transported from anaerobic and sulfate reducing sediments to the oceans. Uncertainties in this first speculative assessment are large. However, this first attempt illustrates that benthic DOS flux is potentially one order of magnitude larger than that via rivers indicating that this could balance the estimated global net removal of refractory DOS.

SERDP ER-1376 Enhancement of In Situ Bioremediation of Energetic Compounds by Coupled Abiotic/Biotic Processes:Final Report for 2004 - 2006

Energy Technology Data Exchange (ETDEWEB)

Szecsody, James E.; Comfort, Steve; Fredrickson, Herbert L.; Boparai, Hardiljeet K.; Devary, Brooks J.; Thompson, Karen T.; Phillips, Jerry L.; Crocker, Fiona H.; Girvin, Donald C.; Resch, Charles T.; Shea, Patrick; Fischer, Ashley E.; Durkin, Lisa M.

2007-08-07

This project was initiated by SERDP to quantify processes and determine the effectiveness of abiotic/biotic mineralization of energetics (RDX, HMX, TNT) in aquifer sediments by combinations of biostimulation (carbon, trace nutrient additions) and chemical reduction of sediment to create a reducing environment. Initially it was hypothesized that a balance of chemical reduction of sediment and biostimulation would increase the RDX, HMX, and TNT mineralization rate significantly (by a combination of abiotic and biotic processes) so that this abiotic/biotic treatment may be a more efficient for remediation than biotic treatment alone in some cases. Because both abiotic and biotic processes are involved in energetic mineralization in sediments, it was further hypothesized that consideration for both abiotic reduction and microbial growth was need to optimize the sediment system for the most rapid mineralization rate. Results show that there are separate optimal abiotic/biostimulation aquifer sediment treatments for RDX/HMX and for TNT. Optimal sediment treatment for RDX and HMX (which have chemical similarities and similar degradation pathways) is mainly chemical reduction of sediment, which increased the RDX/HMX mineralization rate 100 to150 times (relative to untreated sediment), with additional carbon or trace nutrient addition, which increased the RDX/HMX mineralization rate an additional 3 to 4 times. In contrast, the optimal aquifer sediment treatment for TNT involves mainly biostimulation (glucose addition), which stimulates a TNT/glucose cometabolic degradation pathway (6.8 times more rapid than untreated sediment), degrading TNT to amino-intermediates that irreversibly sorb (i.e., end product is not CO2). The TNT mass migration risk is minimized by these transformation reactions, as the triaminotoluene and 2,4- and 2,6-diaminonitrotoluene products that irreversibly sorb are no longer mobile in the subsurface environment. These transformation rates are increased

Abiotic and biotic determinants of leaf carbon exchange capacity from tropical to high boreal biomes

Science.gov (United States)

Smith, N. G.; Dukes, J. S.

2016-12-01

Photosynthesis and respiration on land represent the two largest fluxes of carbon dioxide between the atmosphere and the Earth's surface. As such, the Earth System Models that are used to project climate change are high sensitive to these processes. Studies have found that much of this uncertainty is due to the formulation and parameterization of plant photosynthetic and respiratory capacity. Here, we quantified the abiotic and biotic factors that determine photosynthetic and respiratory capacity at large spatial scales. Specifically, we measured the maximum rate of Rubisco carboxylation (Vcmax), the maximum rate of Ribulose-1,5-bisphosphate regeneration (Jmax), and leaf dark respiration (Rd) in >600 individuals of 98 plant species from the tropical to high boreal biomes of Northern and Central America. We also measured a bevy of covariates including plant functional type, leaf nitrogen content, short- and long-term climate, leaf water potential, plant size, and leaf mass per area. We found that plant functional type and leaf nitrogen content were the primary determinants of Vcmax, Jmax, and Rd. Mean annual temperature and mean annual precipitation were not significant predictors of these rates. However, short-term climatic variables, specifically soil moisture and air temperature over the previous 25 days, were significant predictors and indicated that heat and soil moisture deficits combine to reduce photosynthetic capacity and increase respiratory capacity. Finally, these data were used as a model benchmarking tool for the Community Land Model version 4.5 (CLM 4.5). The benchmarking analyses determined errors in the leaf nitrogen allocation scheme of CLM 4.5. Under high leaf nitrogen levels within a plant type the model overestimated Vcmax and Jmax. This result suggested that plants were altering their nitrogen allocation patterns when leaf nitrogen levels were high, an effect that was not being captured by the model. These data, taken with models in mind

Fungal interactions reduce carbon use efficiency

NARCIS (Netherlands)

Maynard, Daniel S.; Crowther, Thomas W.; Bradford, Mark A.

2017-01-01

The efficiency by which fungi decompose organic matter contributes to the amount of carbon that is retained in biomass vs. lost to the atmosphere as respiration. This carbon use efficiency (CUE) is affected by various abiotic conditions, including temperature and nutrient availability.

Organic carbon degradation in arctic marine sediments, Svalbard: A comparison of initial and terminal steps

DEFF Research Database (Denmark)

Arnosti, C.; Jørgensen, BB

2006-01-01

carbohydrate concentrations were comparable to those measured in more temperate sediments, and likely comprise a considerable fraction of porewater dissolved organic carbon. A comparison of dissolved carbohydrate inventories with hydrolysis and sulfate reduction rates suggests that the turnover of carbon......Degradation of marine organic matter under anoxic conditions involves microbial communities working in concert to remineralize complex substrates to CO2. In order to investigate the coupling between the initial and terminal steps of this sequence in permanently cold sediments, rates...... of extracellular enzymatic hydrolysis and sulfate reduction were measured in parallel cores collected from 5 fjords on the west and northwest coast of Svalbard, in the high Arctic. Inventories of total dissolved carbohydrates were also measured in order to evaluate their potential role in carbon turnover...

Fish mercury development in relation to abiotic characteristics and carbon sources in a six-year-old, Brazilian reservoir

Energy Technology Data Exchange (ETDEWEB)

Tuomola, Leena; Niklasson, Terese [Evolutionary Biology Centre and Department of Limnology, Uppsala University, Norbyvaegen 20, S-752 36 Uppsala (Sweden); Castro e Silva, Edinaldo de [Departamento de Quimica, Universidade Federal de Mato Grosso (UFMT), Av. Fernando C. Costa/sn, 78 090-900 Cuiaba-MT (Brazil); Hylander, Lars D. [Department of Earth Sciences, Air, Water and Landscape Science, Uppsala University, Villavaegen 16, S-752 36 Uppsala (Sweden)], E-mail: Lars.Hylander@hyd.uu.se

2008-02-01

Time series on fish mercury (Hg) development are rare for hydroelectric reservoirs in the tropics. In the central-western part of Brazil, a hydroelectric reservoir, called Lago Manso, was completed in 1999 after that background levels of fish Hg concentrations had been determined. The development for the first 3 years was studied in 2002. The objective of the present study was to determine development of fish Hg concentrations for a second three-year period after flooding. The bioaccumulation factor and certain abiotic and biotic factors, possibly affecting the availability and accumulation of Hg, were also examined. The results show that Hg levels in fish from Lago Manso have increased more than five times compared to the background levels observed before construction of the reservoir. At the same time, dissolved organic carbon has increased while dissolved oxygen has decreased indicating enhanced bioavailability of Hg. In the reservoir, Salminus brasiliensis had in average a Hg content of 1.1 {mu}g g{sup -1} f.w., Pseudoplatystoma fasciatum 1.2, Serrasalmus marginatus/spilopleura 0.9, and Brycon hilarii 0.6 {mu}g g{sup -1} f.w. The average fish Hg contents were higher downstream, except for B. hilarii. In the reservoir, the average Hg content of each species was in 2005 always over the consumption limit (0.55 {mu}g total Hg g{sup -1} f.w.) recommended by WHO. Therefore, the people living around Lago Manso should be informed of the health effects of Hg, and fish consumption recommendations should be carried out. The accumulation of Hg varies widely between species as shown by the bioaccumulation factor which ranges between 5.08 and 5.59 log units. The observed variation is explained by differences in diet and trophic position with piscivorous fish exhibiting the highest mean Hg concentration, followed by carnivorous and omnivorous species. Carbon isotope analyses imply that trophic position is not the only cause of the observed differences in Hg levels between

The stable isotope composition of nitrogen and carbon and elemental contents in modern and fossil seabird guano from Northern Chile - Marine sources and diagenetic effects.

Directory of Open Access Journals (Sweden)

Friedrich Lucassen

Full Text Available Seabird excrements (guano have been preserved in the arid climate of Northern Chile since at least the Pliocene. The deposits of marine organic material in coastal areas potentially open a window into the present and past composition of the coastal ocean and its food web. We use the stable isotope composition of nitrogen and carbon as well as element contents to compare the principal prey of the birds, the Peruvian anchovy, with the composition of modern guano. We also investigate the impact of diagenetic changes on the isotopic composition and elemental contents of the pure ornithogenic sediments, starting with modern stratified deposits and extending to fossil guano. Where possible, 14C systematics is used for age information. The nitrogen and carbon isotopic composition of the marine prey (Peruvian anchovy of the birds is complex as it shows strong systematic variations with latitude. The detailed study of a modern profile that represents a few years of guano deposition up to present reveals systematic changes in nitrogen and carbon isotopic composition towards heavier values that increase with age, i.e. depth. Only the uppermost, youngest layers of modern guano show compositional affinity to the prey of the birds. In the profile, the simultaneous loss of nitrogen and carbon occurs by degassing, and non-volatile elements like phosphorous and calcium are passively enriched in the residual guano. Fossil guano deposits are very low in nitrogen and low in carbon contents, and show very heavy nitrogen isotopic compositions. One result of the study is that the use of guano for tracing nitrogen and carbon isotopic and elemental composition in the marine food web of the birds is restricted to fresh material. Despite systematic changes during diagenesis, there is little promise to retrieve reliable values of marine nitrogen and carbon signatures from older guano. However, the changes in isotopic composition from primary marine nitrogen isotopic

The marine ecosystems at Forsmark and Laxemar-Simpevarp. SR-Site Biosphere

Energy Technology Data Exchange (ETDEWEB)

Aquilonius, Karin [ed.; Studsvik Nuclear AB (Sweden)

2010-12-15

mean for the Baltic Sea and slightly lower in Laxemar-Simpevarp. The sea level at Forsmark has since 2003 fluctuated between 0.6 m below and 1.3 m above the mean level, and the corresponding values for Laxemar-Simpevarp are 0.5 and 0.7 m. Due to the gentler slope of the coastline, the sea level fluctuations have a more marked effect in Forsmark, than in the Laxemar-Simpevarp landscape, exhibiting a steeper slope. In Forsmark the macrophyte vegetation in the photic zone is dominated by red algae and brown filamentous algae. In Laxemar-Simpevarp, the red algae community covers the largest area. The benthic biomass at the bottom sampling sites in Forsmark has been dominated by the Baltic mussel. In Laxemar-Simpevarp the sessile macro fauna attached to hard substrates is completely dominated by the blue mussel in terms of both biomass and abundance. Test fishing in Forsmark and Laxemar-Simpevarp show similar development as in other nearby coastal areas and herring and sprat are the dominant species in offshore areas at both sites. In the inner bays at the sites, perch and pike are the most frequent species. The biomass in Forsmark is dominated by the primary producers and is focused along the shoreline of the area. On average, the marine area in Forsmark shows a positive Net Ecosystem Production (NEP), although most of the area is heterotrophic. The coastal shallow basins tend to be autotrophic, whereas the more offshore basins are heterothropic. The largest carbon pool in all basins in Forsmark is the abiotic pools (i.e. sediment, DIC and DOC) followed by the macrophytes. The major carbon flux in the ecosystem is the advective flux caused by the movement of sea water. All biotic fluxes are small in comparison with the advective flux. The largest biotic flux is fixation of carbon by primary producers. On average 4% of the initially consumed carbon in the marine ecosystem food web is transferred to the top predators. For nitrogen, phosphorus and thorium, the major pool in

Assessment of Carbon Status in Marine Protected Area of Payung Island Waters, South Sumatera Province, Indonesia

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Anna Ida Sunaryo Purwiyanto

2017-03-01

Full Text Available CO2 is a greenhouse gas that receive more attention than the other gases because the properties of carbon easily deformed and diffuseed. Changes in the concentration of CO2 in the water will impact on changes in the amount of CO2 in the atmosphere that affect sea surface temperatures. It continuously will result in a change of marine capture fisheries. Payung Island is one of the important areas in South Sumatra that acts as the provider of the fishery. This because Payung Island is located in the mouth of Musi and Telang River covered by mangrove, has a very important ecological function. However, the condition of the carbon in the waters of the Payung Island has not explored further. This elementary study is to determine status on Payung Island waters as a sink or source of CO2. The study was conducted in June until August 2015. The research stages include surface water sampling, measurement of the CO2 in the atmosphere, the analysis of the concentration of Dissolved Inorganic Carbon (DIC and Total Alkalinity (TA, and partial pressure of carbon dioxide (pCO2 calculation.  Atmospheric CO2 were measured insitu, while the DIC and TA were analyzed using titration methods. Partial pressure of carbon dioxide (pCO2 obtained from the calculation using the software CO2Calc using data of  DIC, TA, nutrients and atmospheric CO2. The results showed that the content of DIC and TA on the Payung Island waters has similar distribution pattern  i.e. high in areas close to the river, and getting lower in the area which were closer to the sea. The comparisons between pCO2 atmosphere and pCO2 waters showed that Payung Island waters generally act as a carbon sink in area towards the sea but however, in the territorial waters adjacent to the river as a source of carbon.   Keywords: carbon, marine protected area, Payung Island waters

Variability in connectivity patterns of fish with ontogenetic migrations: Modelling effects of abiotic and biotic factors

Directory of Open Access Journals (Sweden)

Susanne Eva Tanner

2015-10-01

Full Text Available Connectivity is a critical property of marine fish populations as it drives population replenishment, determines colonization patterns and the resilience of populations to harvest. Understanding connectivity patterns is particularly important in species that present ontogenetic migrations and segregated habitat use during their life history, such as marine species with estuarine nursery areas. Albeit challenging, fish movement can be estimated and quantified using different methodologies depending on the life history stages of interest (e.g. biophysical modelling, otolith chemistry, genetic markers. Relative contributions from estuarine nursery areas to the adult coastal populations were determined using otolith elemental composition and maximum likelihood estimation for four commercially important species (Dicentrarchus labrax, Plathichtys flesus, Solea senegalensis and Solea solea and showed high interannual variability. Here, the effects of abiotic and biotic factors on the observed variability in connectivity rates and extent between estuarine juvenile and coastal adult subpopulations are investigated using generalized linear models (GLM and generalized mixed models (GMM. Abiotic factors impacting both larval and juvenile life history stages are included in the models (e.g. wind force and direction, NAO, water temperature while biotic factors relative to the estuarine residency of juvenile fish are evaluated (e.g. juvenile density, food availability. Factors contributing most to the observed variability in connectivity rates are singled out and compared among species. General trends are identified and results area discussed in the general context of identifying potential management frameworks applicable to different life stages and which may prove useful for ontogenetically migrating species.

Mechanisms of carbon dioxide acquisition and CO2 sensing in marine diatoms: a gateway to carbon metabolism.

Science.gov (United States)

Matsuda, Yusuke; Hopkinson, Brian M; Nakajima, Kensuke; Dupont, Christopher L; Tsuji, Yoshinori

2017-09-05

Diatoms are one of the most successful marine eukaryotic algal groups, responsible for up to 20% of the annual global CO 2 fixation. The evolution of a CO 2 -concentrating mechanism (CCM) allowed diatoms to overcome a number of serious constraints on photosynthesis in the marine environment, particularly low [CO 2 ] aq in seawater relative to concentrations required by the CO 2 fixing enzyme, ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO), which is partly due to the slow diffusion rate of CO 2 in water and a limited CO 2 formation rate from [Formula: see text] in seawater. Diatoms use two alternative strategies to take up dissolved inorganic carbon (DIC) from the environment: one primarily relies on the direct uptake of [Formula: see text] through plasma-membrane type solute carrier (SLC) 4 family [Formula: see text] transporters and the other is more reliant on passive diffusion of CO 2 formed by an external carbonic anhydrase (CA). Bicarbonate taken up into the cytoplasm is most likely then actively transported into the chloroplast stroma by SLC4-type transporters on the chloroplast membrane system. Bicarbonate in the stroma is converted into CO 2 only in close proximity to RubisCO preventing unnecessary CO 2 leakage. CAs play significant roles in mobilizing DIC as it is progressively moved towards the site of fixation. However, the evolutionary types and subcellular locations of CAs are not conserved between different diatoms, strongly suggesting that this DIC mobilization strategy likely evolved multiple times with different origins. By contrast, the recent discovery of the thylakoid luminal θ-CA indicates that the strategy to supply CO 2 to RubisCO in the pyrenoid may be very similar to that of green algae, and strongly suggests convergent coevolution in CCM function of the thylakoid lumen not only among diatoms but among eukaryotic algae in general. In this review, both experimental and corresponding theoretical models of the diatom CCMs are

A protocol for classifying ecologically relevant marine zones, a statistical approach

Science.gov (United States)

Verfaillie, Els; Degraer, Steven; Schelfaut, Kristien; Willems, Wouter; Van Lancker, Vera

2009-06-01

Mapping ecologically relevant zones in the marine environment has become increasingly important. Biological data are however often scarce and alternatives are being sought in optimal classifications of abiotic variables. The concept of 'marine landscapes' is based on a hierarchical classification of geological, hydrographic and other physical data. This approach is however subject to many assumptions and subjective decisions. An objective protocol for zonation is being proposed here where abiotic variables are subjected to a statistical approach, using principal components analysis (PCA) and a cluster analysis. The optimal number of clusters (or zones) is being defined using the Calinski-Harabasz criterion. The methodology has been applied on datasets of the Belgian part of the North Sea (BPNS), a shallow sandy shelf environment with a sandbank-swale topography. The BPNS was classified into 8 zones that represent well the natural variability of the seafloor. The internal cluster consistency was validated with a split-run procedure, with more than 99% correspondence between the validation and the original dataset. The ecological relevance of 6 out of the 8 zones was demonstrated, using indicator species analysis. The proposed protocol, as exemplified for the BPNS, can easily be applied to other areas and provides a strong knowledge basis for environmental protection and management of the marine environment. A SWOT-analysis, showing the strengths, weaknesses, opportunities and threats of the protocol was performed.

Safety aspects of genetically modified crops with abiotic stress tolerance

NARCIS (Netherlands)

Liang, C.; Prins, T.W.; Wiel, van de C.C.M.; Kok, E.J.

2014-01-01

Abiotic stress, such as drought, salinity, and temperature extremes, significantly reduce crop yields. Hence, development of abiotic stress-tolerant crops by modern biotechnology may contribute to global food security. Prior to introducing genetically modified crops with abiotic stress tolerance to

Linking Species Traits to the Abiotic Template of Flowing Waters: Contrasting Eco physiologies Underlie Displacement of Zebra Mussels by Quagga Mussels in a Large River-Estuary

Science.gov (United States)

Casper, A. F.

2005-05-01

The St. Lawrence River-Estuary was the gateway of entry for dreissenids to North America and holds some of the oldest populations. The St. Lawrence also has four distinct physical-chemical water masses (a regional scale abiotic template) that both species inhabit. Despite their ecological similarities, quagga mussels are supplanting zebra mussels in much of their shared range. In order to try to better understand the changing distributions of these two species we compared glycogen, shell mass and tissue biomass in each of the water masses. This comparative physiological combined with experimental approaches (estuarine salinity experiments and reciprocal transplants) showed that while quagga mussels should dominate in most habitats, that abiotic/bioenergetic constraints in two regions (the Ottawa River plume and the freshwater-marine transition zone) might prevent them from dominating these locations. These findings are an example of how the interaction of landscape scale abiotic heterogeneity and a species-specific physiology can have strong impacts of distribution of biota large rivers.

Quantitative Analysis of Carbon Flow into Photosynthetic Products Functioning as Carbon Storage in the Marine Coccolithophore, Emiliania huxleyi.

Science.gov (United States)

Tsuji, Yoshinori; Yamazaki, Masatoshi; Suzuki, Iwane; Shiraiwa, Yoshihiro

2015-08-01

The bloom-forming coccolithophore Emiliania huxleyi (Haptophyta) is a dominant marine phytoplankton, cells of which are covered with calcareous plates (coccoliths). E. huxleyi produces unique lipids of C37-C40 long-chain ketones (alkenones) with two to four trans-unsaturated bonds, β-glucan (but not α-glucan) and acid polysaccharide (AP) associated with the morphogenesis of CaCO3 crystals in coccoliths. Despite such unique features, there is no detailed information on the patterns of carbon allocation into these compounds. Therefore, we performed quantitative estimation of carbon flow into various macromolecular products by conducting (14)C-radiotracer experiments using NaH(14)CO3 as a substrate. Photosynthetic (14)C incorporation into low molecular-mass compounds (LMC), extracellular AP, alkenones, and total lipids except alkenones was estimated to be 35, 13, 17, and 25 % of total (14)C fixation in logarithmic growth phase cells and 33, 19, 18, and 18 % in stationary growth phase cells, respectively. However, less than 1 % of (14)C was incorporated into β-glucan in both cells. (14)C-mannitol occupied ca. 5 % of total fixed (14)C as the most dominant LMC product. Levels of all (14)C compounds decreased in the dark. Therefore, alkenones and LMC (including mannitol), but not β-glucan, function in carbon/energy storage in E. huxleyi, irrespective of the growth phase. Compared with other algae, the low carbon flux into β-glucan is a unique feature of carbon metabolism in E. huxelyi.

Abscisic Acid and Abiotic Stress Signaling

OpenAIRE

Tuteja, Narendra

2007-01-01

Abiotic stress is severe environmental stress, which impairs crop production on irrigated land worldwide. Overall, the susceptibility or tolerance to the stress in plants is a coordinated action of multiple stress responsive genes, which also cross-talk with other components of stress signal transduction pathways. Plant responses to abiotic stress can be determined by the severity of the stress and by the metabolic status of the plant. Abscisic acid (ABA) is a phytohormone critical for plant ...

Resilience of cereal crops to abiotic stress: A review | Ahmad ...

African Journals Online (AJOL)

In the last century, conventional selection and breeding program proved to be highly effective in improving crops against abiotic stresses. Therefore, breeding for abiotic stress tolerance in crop plants should be given high research priority as abiotic stresses are the main factor negatively affecting crop growth and ...

Soil respiration in the cold desert environment of the Colorado Plateau (USA): Abiotic regulators and thresholds

Science.gov (United States)

Fernandez, D.P.; Neff, J.C.; Belnap, J.; Reynolds, R.L.

2006-01-01

Decomposition is central to understanding ecosystem carbon exchange and nutrient-release processes. Unlike mesic ecosystems, which have been extensively studied, xeric landscapes have received little attention; as a result, abiotic soil-respiration regulatory processes are poorly understood in xeric environments. To provide a more complete and quantitative understanding about how abiotic factors influence soil respiration in xeric ecosystems, we conducted soil- respiration and decomposition-cloth measurements in the cold desert of southeast Utah. Our study evaluated when and to what extent soil texture, moisture, temperature, organic carbon, and nitrogen influence soil respiration and examined whether the inverse-texture hypothesis applies to decomposition. Within our study site, the effect of texture on moisture, as described by the inverse texture hypothesis, was evident, but its effect on decomposition was not. Our results show temperature and moisture to be the dominant abiotic controls of soil respiration. Specifically, temporal offsets in temperature and moisture conditions appear to have a strong control on soil respiration, with the highest fluxes occurring in spring when temperature and moisture were favorable. These temporal offsets resulted in decomposition rates that were controlled by soil moisture and temperature thresholds. The highest fluxes of CO2 occurred when soil temperature was between 10 and 16??C and volumetric soil moisture was greater than 10%. Decomposition-cloth results, which integrate decomposition processes across several months, support the soil-respiration results and further illustrate the seasonal patterns of high respiration rates during spring and low rates during summer and fall. Results from this study suggest that the parameters used to predict soil respiration in mesic ecosystems likely do not apply in cold-desert environments. ?? Springer 2006.

Role of the marine biosphere in the global carbon cycle

International Nuclear Information System (INIS)

Longhurst, A.R.

1991-01-01

The geographical disequilibrium of our planet is due mainly to carbon sequestration by marine organisms over geological time. Changes in atmospheric CO 2 during interglacial-glacial transitions require biological sequestration of carbon in the oceans. Nutrient-limited export flux from new production in surface waters is the key process in this sequestrian. The most common model for export flux ignores potentially important nutrient sources and export mechanisms. Export flux occurs as a result of biological processes whose complexity appears not to be accommodated by the principal classes of simulation models, this being especially true for food webs dominated by single-celled protists whose trophic function is more dispersed than among the multicelled metazoa. The fashionable question concerning a hypothetical 'missing sink' for CO 2 emissions is unanswerable because of imprecision in our knowledge of critical flux rates. This question also diverts attention from more relevant studies of how the biological pump may be perturbed by climatic consequences of CO 2 emissions. Under available scenarios for climate change, such responses may seem more likely to reinforce, rather than mitigate, the rate of increase of atmospheric CO 2

Detection of Abiotic Methane in Terrestrial Continental Hydrothermal Systems: Implications for Methane on Mars

Science.gov (United States)

Socki, Richard A.; Niles, Paul B.; Gibson, Everett K., Jr.; Romanek, Christopher S.; Zhang, Chuanlun L.; Bissada, Kadry K.

2008-01-01

The recent detection of methane in the Martian atmosphere and the possibility that its origin could be attributed to biological activity, have highlighted the importance of understanding the mechanisms of methane formation and its usefulness as a biomarker. Much debate has centered on the source of the methane in hydrothermal fluids, whether it is formed biologically by microorganisms, diagenetically through the decomposition of sedimentary organic matter, or inorganically via reduction of CO2 at high temperatures. Ongoing research has now shown that much of the methane present in sea-floor hydrothermal systems is probably formed through inorganic CO2 reduction processes at very high temperatures (greater than 400 C). Experimental results have indicated that methane might form inorganically at temperatures lower still, however these results remain controversial. Currently, methane in continental hydrothermal systems is thought to be formed mainly through the breakdown of sedimentary organic matter and carbon isotope equilibrium between CO2 and CH4 is thought to be rarely present if at all. Based on isotopic measurements of CO2 and CH4 in two continental hydrothermal systems, we suggest that carbon isotope equilibration exists at temperatures as low as 155 C. This would indicate that methane is forming through abiotic CO2 reduction at lower temperatures than previously thought and could bolster arguments for an abiotic origin of the methane detected in the martian atmosphere.

Stable carbon and nitrogen isotope variation in the northern lampfish and Neocalanus, marine survival rates of pink salmon, and meso-scale eddies in the Gulf of Alaska

Science.gov (United States)

Kline, Thomas C., Jr.

2010-10-01

Northern lampfish (NLF), Stenobrachius leucopsarus (Myctophidae), the dominant pelagic fish taxon of the subarctic North Pacific Ocean, were sampled opportunistically in MOCNESS tows made on continental slope waters of the Gulf of Alaska (GOA) as well as in deep areas of Prince William Sound (PWS) during 1997-2006. The overall mean whole-body lipid-corrected stable carbon isotope value of NLF from the GOA was -21.4 (SD = 0.7) whereas that from PWS was -19.5 (SD = 0.9). This pattern is similar to that observed for late feeding stage Neocalanus cristatus copepods thus confirming a mean cross-shelf carbon stable isotope gradient. As well, there was a statistically significant positive correlation between the considerable temporal variation in the monthly mean carbon stable isotope composition of GOA Neocalanus and GOA NLF ( r = 0.69, P food chain length whereas carbon stable isotopes reflect organic carbon production. The carbon stable isotope values of NLF, measured in May, were positively correlated to marine survival rate of PWS hatchery salmon cohorts entering the marine environment the same year ( r = 0.84, P < 0.001). The carbon stable isotope values for Neocalanus in May were also positively correlated to salmon marine survival ( r = 0.82, P < 0.001). Processes thus manifested through the carbon stable isotope value of biota from the continental slope more closely predicted marine survival rate than that of the salmon themselves. The incipient relationships suggested by the correlations are consistent with the hypothesis that exchange between coastal and oceanic waters in the study area is driven by meso-scale eddies. These eddies facilitate the occurrence of slope phytoplankton blooms as well as drive oceanic zooplankton subsidies into coastal waters. The strong as well as more significant correlations of salmon marine survival rate to NLF as well as slope Neocalanus carbon stable isotope values point to processes taking place at the slope (i.e., interactions

Black carbon concentrations and sources in the marine boundary layer of the tropical Atlantic Ocean using four methodologies

Science.gov (United States)

Combustion-derived aerosols in the marine boundary layer have been poorly studied, especially in remote environments such as the open Atlantic Ocean. The tropical Atlantic has the potential to contain a high concentration of aerosols, such as black carbon, due to the African emis...

Marine subsidies of island communities in the Gulf of California: evidence from stable carbon and nitrogen isotopes

International Nuclear Information System (INIS)

Anderson, W.B.; Polis, G.A.

1998-01-01

Coastal sites support larger (2 to > 100 x) populations of many consumers than inland sites on islands in the Gulf of California. Previous data suggested that subsidies of energy and nutrients from the ocean allowed large coastal populations. Stable carbon and nitrogen isotopes are frequently used to analyse diet composition of organisms: they are particularly useful to distinguish between diet sources with distinct isotopic signatures, such as marine and terrestrial diets. We analyzed the 13 C and 15 N concentrations of coastal versus inland spiders and scorpions to test the hypothesis that coastal individuals exhibited more strongly marine-based diets than inland individuals. Coastal spiders and scorpions were significantly more enriched in 13 C and 15 N than inland spiders and scorpions, suggesting that the coastal individuals consumed more marine-based foods than their inland counterparts. These patterns existed in both drought years and wet El Nino years. However, the marine influence was stronger in drought years when terrestrial productivity was nearly non-existent, than in wet years when terrestrial productivity increased by an order of magnitude. (au)

The Abiotic Depletion Potential: Background, Updates, and Future

Directory of Open Access Journals (Sweden)

Lauran van Oers

2016-03-01

Full Text Available Depletion of abiotic resources is a much disputed impact category in life cycle assessment (LCA. The reason is that the problem can be defined in different ways. Furthermore, within a specified problem definition, many choices can still be made regarding which parameters to include in the characterization model and which data to use. This article gives an overview of the problem definition and the choices that have been made when defining the abiotic depletion potentials (ADPs for a characterization model for abiotic resource depletion in LCA. Updates of the ADPs since 2002 are also briefly discussed. Finally, some possible new developments of the impact category of abiotic resource depletion are suggested, such as redefining the depletion problem as a dilution problem. This means taking the reserves in the environment and the economy into account in the reserve parameter and using leakage from the economy, instead of extraction rate, as a dilution parameter.

The effects of atmospheric [CO2] on carbon isotope fractionation and magnesium incorporation into biogenic marine calcite

Science.gov (United States)

Vieira, Veronica

1997-01-01

The influences of atmospheric carbon dioxide on the fractionation of carbon isotopes and the magnesium incorporation into biogenic marine calcite were investigated using samples of the calcareous alga Amphiroa and benthic foraminifer Sorites grown in the Biosphere 2 Ocean system under variable atmospheric CO2 concentrations (approximately 500 to 1200 ppm). Carbon isotope fractionation was studied in both the organic matter and the skeletal carbonate. Magnesium analysis was to be performed on the carbonate removed during decalcification. These data have not been collected due to technical problems. Carbon isotope data from Amphiroa yields a linear relation between [CO2] and Delta(sup 13)C(sub Corg)values suggesting that the fractionation of carbon isotopes during photosynthesis is positively correlated with atmospheric [CO2]. [CO2] and Delta(sup 13)C(sub Corg) values for Sorites produce a relation that is best described by a hyperbolic function where Delta(sup 13)C(sub Corg) values increase between 300 and 700 ppm and decrease from 700 to 1200 ppm. Further investigation of this relation and Sorites physiology is needed.

Abiotic stress miRNomes in the Triticeae

OpenAIRE

Alptekin, Burcu; Langridge, Peter; Budak, Hikmet

2016-01-01

The continued growth in world population necessitates increases in both the quantity and quality of agricultural production. Triticeae members, particularly wheat and barley, make an important contribution to world food reserves by providing rich sources of carbohydrate and protein. These crops are grown over diverse production environments that are characterized by a range of environmental or abiotic stresses. Abiotic stresses such as drought, heat, salinity, or nutrient deficiencies and tox...

New Environmentalconditions Responsible for the amount of mg Incorporated in Biogenic Carbonates

Science.gov (United States)

Zuddas, P.; Cherchi, A.; DeGiudici, G. B.; Buosi, C.

2012-12-01

The composition of carbonate minerals formed in past and present oceans is assumed to be significantly controlled by temperature and seawater composition. Several kinetic laboratory investigations have suggested that the temperature is kinetically responsible for the amount of Mg incorporated in both abiotic and biogenic calcites and that variation of kinetic reaction mechanism resulting from the temperature changes are correlated with the variable amount of Mg incorporated in calcites. These results explain why in present-day marine carbonates low-Mg calcite cements are mainly associated with cool water while high-Mg carbonates are dominantly found in warm-water environments. An apparent inverse relationship between the global average paleo-temperature and the Mg/Ca ratio is however observed in the past formed marine carbonate. This apparent contradiction has been interpreted as resulting from a possible changing in the relative seawater geochemical cycles of these cations. Recent monitoring of costal areas in presence of heavy metals and CO2 released from industrial polluted area reveals the presence of porcelanaceous miliolids infested by microscopic boring microflora (cyanobacteria, algae and fungi). Here, benthonic foraminifera have Mg/Ca molar ratio by one order of magnitude higher when compared to the average value of the same genus living under uncontaminated environments. A similar behaviour has been found for Zn, Cd and Pb. In these contaminated environments, temperature and average major seawater composition remain constant, while PCO2 partial pressure (estimated by pH and alkalinity using the ion pairing model) is 3-5 times higher than the average for the open sea nearby. Geochemical models predicts that CO2 increase is affecting carbonate saturation state of surface water in the twenty-first century indicating that calcareous organisms may have difficulty calcifying leading to production of weaker skeletons and greater vulnerability to erosion. The

Effects of Biodiesel Blend on Marine Fuel Characteristics for Marine Vessels

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Cherng-Yuan Lin

2013-09-01

Full Text Available Biodiesel produced from vegetable oils, animal fats and algae oil is a renewable, environmentally friendly and clean alternative fuel that reduces pollutants and greenhouse gas emissions in marine applications. This study investigates the influence of biodiesel blend on the characteristics of residual and distillate marine fuels. Adequate correlation equations are applied to calculate the fuel properties of the blended marine fuels with biodiesel. Residual marine fuel RMA has inferior fuel characteristics compared with distillate marine fuel DMA and biodiesel. The flash point of marine fuel RMA could be increased by 20% if blended with 20 vol% biodiesel. The sulfur content of residual marine fuel could meet the requirement of the 2008 MARPOL Annex VI Amendment by blending it with 23.0 vol% biodiesel. In addition, the kinematic viscosity of residual marine fuel could be reduced by 12.9% and the carbon residue by 23.6% if 20 vol% and 25 vol% biodiesel are used, respectively. Residual marine fuel blended with 20 vol% biodiesel decreases its lower heating value by 1.9%. Moreover, the fuel properties of residual marine fuel are found to improve more significantly with biodiesel blending than those of distillate marine fuel.

Protection of the Abiotic Environment

International Nuclear Information System (INIS)

Michel, R.; Hutmacher, K. E.; Landfermann, H. H.

2004-01-01

Environmental protection against the dangers arising from ionizing radiation, radioactive materials, and other harmful substances is more than to avoid acute dangers or risks for humans or for non-human living organisms. To allow for a sustainable development the abiotic part of the environment must not be neglected in concepts of environmental protection. The environmental impact of some selected long-lived anthropogenic radionuclides is used to exemplify adverse effects for which a unified approach is needed. To this end, indicators are needed for the assessment of the human impact on the abiotic environment which allows to compare different human actions with respect to sustainability and to choose appropriate measures in the competition for a sustainable development. Such indicators have to account for the dynamics of the different environmental compartments. Using the long-lived radionuclides 14C, 36Cl, 85Kr, and 129I as examples, the importance to consider dynamical models and ecological lifetimes in quantifications of the human impact on the environment is emphasized. Particular problems arise from the natural occurrences and variability of radionuclides and other harmful substances. Suitable indicators for the assessment of human impact on the abiotic compartments air, water, and soil are discussed. (Author) 18 refs

Estimation of carbonate concentration and characterization of marine sediments by Fourier transform infrared spectroscopy.

Digital Repository Service at National Institute of Oceanography (India)

Veerasingam, S.; Venkatachalapathy, R.

its saturation horizon is shallower than that calcite [1]. Elements such as Ca2+ and Mg2+, in addition to their substantial contribution to marine sediments, are used biologically in vital cellular processes and in the mineralization of skeletons... such as ocean acidification on ecosystems. Thus, a rapid, cheap and non-destructive tool is required to investigate the distribution of CaCO3 in sediments for the understanding of the fate of biologically produced carbonate. 3    FTIR spectroscopy is one...

Organic carbon burial in fjords: Terrestrial versus marine inputs

Science.gov (United States)

Cui, Xingqian; Bianchi, Thomas S.; Savage, Candida; Smith, Richard W.

2016-10-01

Fjords have been identified as sites of enhanced organic carbon (OC) burial and may play an important role in regulating climate change on glacial-interglacial timescales. Understanding sediment processes and sources of sedimentary OC are necessary to better constrain OC burial in fjords. In this study, we use Fiordland, New Zealand, as a case study and present data on surface sediments, sediment down-cores and terrestrial end-members to examine dynamics of sediments and the sources of OC in fjord sediments. Sediment cores showed evidence of multiple particle sources, frequent bioturbation and mass-wasting events. A multi-proxy approach (stable isotopes, lignin-phenols and fatty acids) allowed for separation of marine, soil and vascular plant OC in surface sediments. The relationship between mass accumulation rate (MAR) and OC contents in fjord surface sediments suggested that mineral dilution is important in controlling OC content on a global scale, but is less important for specific regions (e.g., New Zealand). The inconsistency of OC budgets calculated by using MAR weighted %OC and OC accumulation rates (AR; 6 vs 21-31 Tg OC yr-1) suggested that sediment flux in fjords was likely underestimated. By using end-member models, we propose that 55% to 62% of total OC buried in fjords is terrestrially derived, and accounts for 17 ± 12% of the OCterr buried in all marine sediments. The strong correlation between MAR and OC AR indicated that OC flux will likely decrease in fjords in the future with global warming due to decrease in sediment flux caused by glacier denudation.

Microbial bioavailability regulates organic matter preservation in marine sediments

NARCIS (Netherlands)

Koho, K. A.; Nierop, K. G. J.; Moodley, L.; Middelburg, J. J.; Pozzato, L.; Soetaert, K.; van der Plicht, J.; Reichart, G-J.; Herndl, G.

2013-01-01

Burial of organic matter (OM) plays an important role in marine sediments, linking the short-term, biological carbon cycle with the long-term, geological subsurface cycle. It is well established that low-oxygen conditions promote organic carbon burial in marine sediments. However, the mechanism

Polyamines and abiotic stress in plants: A complex relationship

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Rakesh eMinocha

2014-05-01

Full Text Available The physiological relationship between abiotic stress in plants and polyamines was reported more than 40 years ago. Ever since there has been a debate as to whether increased polyamines protect plants against abiotic stress (e.g. due to their ability to deal with oxidative radicals or cause damage to them (perhaps due to hydrogen peroxide produced by their catabolism. The observation that cellular polyamines are typically elevated in plants under both short-term as well as long-term abiotic stress conditions is consistent with the possibility of their dual effects, i.e. being a protector as well as a perpetrator of stress damage to the cells. The observed increase in tolerance of plants to abiotic stress when their cellular contents are elevated by either exogenous treatment with polyamines or through genetic engineering with genes encoding polyamine biosynthetic enzymes is indicative of a protective role for them. However, through their catabolic production of hydrogen peroxide and acrolein, both strong oxidizers, they can potentially be the cause of cellular harm during stress. In fact, somewhat enigmatic but strong positive relationship between abiotic stress and foliar polyamines has been proposed as a potential biochemical marker of persistent environmental stress in forest trees in which phenotypic symptoms of stress are not yet visible. Such markers may help forewarn forest managers to undertake amelioration strategies before the appearance of visual symptoms of stress and damage at which stage it is often too late for implementing strategies for stress remediation and reversal of damage. This review provides a comprehensive and critical evaluation of the published literature on interactions between abiotic stress and polyamines in plants, and examines the experimental strategies used to understand the functional significance of this relationship with the aim of improving plant productivity, especially under conditions of abiotic stress.

Role of Biotic and Abiotic Processes on Soil CO2 Dynamics in the McMurdo Dry Valleys, Antarctica

Science.gov (United States)

Risk, D. A.; Macintyre, C. M.; Lee, C.; Cary, C.; Shanhun, F.; Almond, P. C.

2016-12-01

In the harsh conditions of the Antarctic Dry Valleys, microbial activity has been recorded via measurements of soil carbon dioxide (CO2) concentration and surface efflux. However, high temporal resolution studies in the Dry Valleys have also shown that abiotic solubility-driven processes can strongly influence (and perhaps even dominate) the CO2 dynamics in these low flux environments and suggests that biological activity may be lower than previously thought. In this study, we aim to improve our understanding of CO2 dynamics (biotic and abiotic) in Antarctic Dry Valley soils using long-term automated measurements of soil CO2 surface flux and soil profile concentration at several sites, often at sub-diel frequency. We hypothesize that soil CO2 variations are driven primarily by environmental factors affecting CO2 solubility in soil solution, mainly temperature, and that these processes may even overprint biologic production in representative Dry Valley soils. Monitoring of all sites revealed only one likely biotic CO2 production event, lasting three weeks during the Austral summer and reaching fluxes of 0.4 µmol/m2/s. Under more typical low flux conditions (sampling campaigns. Subsurface CO2 monitoring and a lab-controlled Antarctic soil simulation experiment confirmed that abiotic processes are capable of dominating soil CO2 variability. Diel temperature cycles crossing the freezing boundary revealed a dual abiotic cycle of solubility cycling and gas exclusion from ice formation observed only by high temporal frequency measurements (30 min). This work demonstrates a need for a numerical model to partition the dynamic abiotic processes underlying any biotic CO2 production in order to understand potential climate-change induced increases in microbial productivity in terrestrial Antarctica.

Biotic, abiotic, and management controls on the net ecosystem CO2 exchange of European mountain grassland ecosystems

DEFF Research Database (Denmark)

Wohlfahrt, Georg; Anderson-Dunn, Margaret; Bahn, Michael

2008-01-01

The net ecosystem carbon dioxide (CO2) exchange (NEE) of nine European mountain grassland ecosystems was measured during 2002-2004 using the eddy covariance method. Overall, the availability of photosynthetically active radiation (PPFD) was the single most important abiotic influence factor for NEE....... Its role changed markedly during the course of the season, PPFD being a better predictor for NEE during periods favorable for CO2 uptake, which was spring and autumn for the sites characterized by summer droughts (southern sites) and (peak) summer for the Alpine and northern study sites. This general...... pattern was interrupted by grassland management practices, that is, mowing and grazing, when the variability in NEE explained by PPFD decreased in concert with the amount of aboveground biomass (BMag). Temperature was the abiotic influence factor that explained most of the variability in ecosystem...

One carbon metabolism in SAR11 pelagic marine bacteria.

Directory of Open Access Journals (Sweden)

Jing Sun

Full Text Available The SAR11 Alphaproteobacteria are the most abundant heterotrophs in the oceans and are believed to play a major role in mineralizing marine dissolved organic carbon. Their genomes are among the smallest known for free-living heterotrophic cells, raising questions about how they successfully utilize complex organic matter with a limited metabolic repertoire. Here we show that conserved genes in SAR11 subgroup Ia (Candidatus Pelagibacter ubique genomes encode pathways for the oxidation of a variety of one-carbon compounds and methyl functional groups from methylated compounds. These pathways were predicted to produce energy by tetrahydrofolate (THF-mediated oxidation, but not to support the net assimilation of biomass from C1 compounds. Measurements of cellular ATP content and the oxidation of (14C-labeled compounds to (14CO(2 indicated that methanol, formaldehyde, methylamine, and methyl groups from glycine betaine (GBT, trimethylamine (TMA, trimethylamine N-oxide (TMAO, and dimethylsulfoniopropionate (DMSP were oxidized by axenic cultures of the SAR11 strain Ca. P. ubique HTCC1062. Analyses of metagenomic data showed that genes for C1 metabolism occur at a high frequency in natural SAR11 populations. In short term incubations, natural communities of Sargasso Sea microbial plankton expressed a potential for the oxidation of (14C-labeled formate, formaldehyde, methanol and TMAO that was similar to cultured SAR11 cells and, like cultured SAR11 cells, incorporated a much larger percentage of pyruvate and glucose (27-35% than of C1 compounds (2-6% into biomass. Collectively, these genomic, cellular and environmental data show a surprising capacity for demethylation and C1 oxidation in SAR11 cultures and in natural microbial communities dominated by SAR11, and support the conclusion that C1 oxidation might be a significant conduit by which dissolved organic carbon is recycled to CO(2 in the upper ocean.

Ocean acidification and marine microorganisms: responses and consequences

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Surajit Das

2015-10-01

Full Text Available Ocean acidification (OA is one of the global issues caused by rising atmospheric CO2. The rising pCO2 and resulting pH decrease has altered ocean carbonate chemistry. Microbes are key components of marine environments involved in nutrient cycles and carbon flow in marine ecosystems. However, these marine microbes and the microbial processes are sensitive to ocean pH shift. Thus, OA affects the microbial diversity, primary productivity and trace gases emission in oceans. Apart from that, it can also manipulate the microbial activities such as quorum sensing, extracellular enzyme activity and nitrogen cycling. Short-term laboratory experiments, mesocosm studies and changing marine diversity scenarios have illustrated undesirable effects of OA on marine microorganisms and ecosystems. However, from the microbial perspective, the current understanding on effect of OA is based mainly on limited experimental studies. It is challenging to predict response of marine microbes based on such experiments for this complex process. To study the response of marine microbes towards OA, multiple approaches should be implemented by using functional genomics, new generation microscopy, small-scale interaction among organisms and/or between organic matter and organisms. This review focuses on the response of marine microorganisms to OA and the experimental approaches to investigate the effect of changing ocean carbonate chemistry on microbial mediated processes.

Bioaccumulation and Toxicity of Single-Walled Carbon Nanotubes to Benthic Organisms at the Base of the Marine Food Chain

Science.gov (United States)

As the use of single-walled carbon nanotubes (SWNTs) increases over time, so does the potential for environmental release. This research aimed to determine the toxicity, bioavailability, and bioaccumulation of SWNTs in marine benthic organisms at the base of the food chain. The t...

Near-surface, marine seismic-reflection data defines potential hydrogeologic confinement bypass in a tertiary carbonate aquifer, southeastern Florida

Science.gov (United States)

Cunningham, Kevin J.; Walker, Cameron; Westcott, Richard L.

2012-01-01

Approximately 210 km of near-surface, high-frequency, marine seismic-reflection data were acquired on the southeastern part of the Florida Platform between 2007 and 2011. Many high-resolution, seismic-reflection profiles, interpretable to a depth of about 730 m, were collected on the shallow-marine shelf of southeastern Florida in water as shallow as 1 m. Landward of the present-day shelf-margin slope, these data image middle Eocene to Pleistocene strata and Paleocene to Pleistocene strata on the Miami Terrace. This high-resolution data set provides an opportunity to evaluate geologic structures that cut across confining units of the Paleocene to Oligocene-age carbonate rocks that form the Floridan aquifer system.Seismic profiles image two structural systems, tectonic faults and karst collapse structures, which breach confining beds in the Floridan aquifer system. Both structural systems may serve as pathways for vertical groundwater flow across relatively low-permeability carbonate strata that separate zones of regionally extensive high-permeability rocks in the Floridan aquifer system. The tectonic faults occur as normal and reverse faults, and collapse-related faults have normal throw. The most common fault occurrence delineated on the reflection profiles is associated with karst collapse structures. These high-frequency seismic data are providing high quality structural analogs to unprecedented depths on the southeastern Florida Platform. The analogs can be used for assessment of confinement of other carbonate aquifers and the sealing potential of deeper carbonate rocks associated with reservoirs around the world.

Ballast minerals and the sinking carbon flux in the ocean: carbon-specific respiration rates and sinking velocity of marine snow aggregates

Directory of Open Access Journals (Sweden)

M. H. Iversen

2010-09-01

Full Text Available Recent observations have shown that fluxes of ballast minerals (calcium carbonate, opal, and lithogenic material and organic carbon fluxes are closely correlated in the bathypelagic zones of the ocean. Hence it has been hypothesized that incorporation of biogenic minerals within marine aggregates could either protect the organic matter from decomposition and/or increase the sinking velocity via ballasting of the aggregates. Here we present the first combined data on size, sinking velocity, carbon-specific respiration rate, and composition measured directly in three aggregate types; Emiliania huxleyi aggregates (carbonate ballasted, Skeletonema costatum aggregates (opal ballasted, and aggregates made from a mix of both E. huxleyi and S. costatum (carbonate and opal ballasted. Overall average carbon-specific respiration rate was ~0.13 d⁻¹ and did not vary with aggregate type and size. Ballasting from carbonate resulted in 2- to 2.5-fold higher sinking velocities than those of aggregates ballasted by opal. We compiled literature data on carbon-specific respiration rate and sinking velocity measured in aggregates of different composition and sources. Compiled carbon-specific respiration rates (including this study vary between 0.08 d⁻¹ and 0.20 d⁻¹. Sinking velocity increases with increasing aggregate size within homogeneous sources of aggregates. When compared across different particle and aggregate sources, however, sinking velocity appeared to be independent of particle or aggregate size. The carbon-specific respiration rate per meter settled varied between 0.0002 m⁻¹ and 0.0030 m⁻¹, and decreased with increasing aggregate size. It was lower for calcite ballasted aggregates as compared to that of similar sized opal ballasted aggregates.

Properties Variation of Carbon Fiber Reinforced Composite for Marine Current Turbine in Seawater

Directory of Open Access Journals (Sweden)

Li Jing

2016-01-01

Full Text Available Turbine blade which are generally made of composite is a core device among components of tidal current power generator that converts the flow of tidal current into a turning force. Recent years, damages of composite turbine blades have been reported due to reasons like seawater degradation, lake of strength, manufacture etc. In this paper, water absorption, tensile, bending, longitudinal transverse shearing properties of carbon fiber reinforced plastic (CRP composite which would be applied to fabricate the marine current turbine blade has been investigated. Furthermore, the variations of properties with seawater immersion period were studied. The results indicated that the water absorption increased almost linearly at the beginning of immersion and then became stable. Tensile strength of specimen tended to decrease firstly and then recovered slightly. However, the longitudinal transverse shearing strength showed reverse variation trend comparing to tensile strength. And the bending property of specimens was depressed significantly. The properties variations in seawater shall be referenced to design and fabrication of composite marine current turbine blade.

Contamination of short-chain chlorinated paraffins to the biotic and abiotic environments in the Bohai Sea.

Science.gov (United States)

Jiang, Wanyanhan; Huang, Tao; Chen, Han; Lian, Lulu; Liang, Xiaoxue; Jia, Chenhui; Gao, Hong; Mao, Xiaoxuan; Zhao, Yuan; Ma, Jianmin

2018-02-01

Short-chain chlorinated paraffins (SCCPs) have been produced and emitted intensively around the Bohai Sea, potentially causing risks to this unique ecosystem and one of primary fishery resources in China and busiest seaways in the world. Little is known about fate, cycling, and sources of SCCPs in the Bohai Sea biotic and abiotic environment. In this study, we combined a marine food web model with a comprehensive atmospheric transport-multiple phase exchange model to quantify SCCPs in the biotic and abiotic environment in the Bohai Sea. We performed multiple modeling scenario investigations to examine SCCP levels in water, sediment, and phytoplankton. We assessed numerically dry and wet depositions, biomagnification and bioaccumulation of SCCPs in the Bohai Sea marine food web. Results showed declining SCCP levels in water and sediment with increasing distance from the coastline, and so do dry and wet depositions. The net deposition overwhelmed the water-air exchange of SCCPs due to their current use in China, though the diffusive gas deposition fluctuated monthly subject to mean wind speed and temperature. A risk assessment manifests that SCCPs levels in the Bohai Sea fish species are at present not posing risks to the residents in the Bohai Sea Rim region. We identified that the SCCP emission sources in the south of the Bohai Sea made a primary contribution to its loadings to the seawater and fish contamination associated with the East Asian summer monsoon. In contrast, the SCCP emissions from the north and northwest regions of the Bohai Sea were major sources contributing to their loading and contamination to Bohai Sea food web during the wintertime, potentially driven by the East Asian winter monsoon. Copyright © 2017 Elsevier Ltd. All rights reserved.

Metabolic fluxes in the central carbon metabolism of Dinoroseobacter shibae and Phaeobacter gallaeciensis, two members of the marine Roseobacter clade

Directory of Open Access Journals (Sweden)

Rabus Ralf

2009-09-01

Full Text Available Abstract Background In the present work the central carbon metabolism of Dinoroseobacter shibae and Phaeobacter gallaeciensis was studied at the level of metabolic fluxes. These two strains belong to the marine Roseobacter clade, a dominant bacterial group in various marine habitats, and represent surface-associated, biofilm-forming growth (P. gallaeciensis and symbiotic growth with eukaryotic algae (D. shibae. Based on information from recently sequenced genomes, a rich repertoire of pathways has been identified in the carbon core metabolism of these organisms, but little is known about the actual contribution of the various reactions in vivo. Results Using 13C labelling techniques in specifically designed experiments, it could be shown that glucose-grown cells of D. shibae catabolise the carbon source exclusively via the Entner-Doudoroff pathway, whereas alternative routes of glycolysis and the pentose phosphate pathway are obviously utilised for anabolic purposes only. Enzyme assays confirmed this flux pattern and link the lack of glycolytic flux to the absence of phosphofructokinase activity. The previously suggested formation of phosphoenolpyruvate from pyruvate during mixotrophic CO2 assimilation was found to be inactive under the conditions studied. Moreover, it could be shown that pyruvate carboxylase is involved in CO2 assimilation and that the cyclic respiratory mode of the TCA cycle is utilised. Interestingly, the use of intracellular pathways was highly similar for P. gallaeciensis. Conclusion The present study reveals the first insight into pathway utilisation within the Roseobacter group. Fluxes through major intracellular pathways of the central carbon metabolism, which are closely linked to the various important traits found for the Roseobacter clade, could be determined. The close similarity of fluxes between the two physiologically rather different species might provide the first indication of more general key properties among

Delayed recovery of non-marine tetrapods after the end-Permian mass extinction tracks global carbon cycle

OpenAIRE

Irmis, Randall B.; Whiteside, Jessica H.

2011-01-01

During the end-Permian mass extinction, marine ecosystems suffered a major drop in diversity, which was maintained throughout the Early Triassic until delayed recovery during the Middle Triassic. This depressed diversity in the Early Triassic correlates with multiple major perturbations to the global carbon cycle, interpreted as either intrinsic ecosystem or external palaeoenvironmental effects. In contrast, the terrestrial record of extinction and recovery is less clear; the effects and magn...

Simulated and observed trends in key variables of the Arctic marine carbon cycle

Science.gov (United States)

Goris, Nadine; Heinze, Christoph; Lauvset, Siv; Petrenko, Dmitry; Pozdnyakov, Dmitry; Schwinger, Jörg

2013-04-01

For the Arctic region, a thorough monitoring of the marine carbon cycle is important, as the general "polar amplification" of climate change also translates into the biogeochemical realm. As compared to the global ocean, the sink for human-produced CO2 is fairly small in the Arctic Ocean itself. Nevertheless, it is important to follow up this Arctic sink as a further control of the regional carbon budget and to record changes in the marine carbon cycle on the way towards a "blue Arctic". Since observations on the Arctic are rare, the EU FP7 MONARCH-A project tries to enable adequate descriptions of the status and evolution of the Arctic region Earth system components by generating time series of observation datasets and model hindcasts. In terms of the marine carbon cycle, this analysis focuses mainly on the key variables pCO2 and primary productivity. For oceanic pCO2, the comprehensive data-sets SOCAT and LDEO were combined, while measurements of atmospheric CO2 were collected from the GLOBALVIEW-CO2 data integration project. Monthly Primary Production fields were retrieved from the sensors MODIS and SeaWiFs. In order to get an overall picture of the behavior and trends of those key variables, in addition the physical-biogeochemical model MICOM-HAMOCC-M was employed. The investigation showed that both oceanic and atmospheric pCO2 are consistent variables which have a regular annual cycle and a similar behaviour all over the Arctic for both model and data. In contrast, primary production shows an irregular annual cycle in both range and form, varying over the Arctic. While a few well distributed measurement stations with continuous observations are sufficient to get a comprehensive picture for consistent variables like pCO2, it is relatively difficult and costly to get a comprehensive record of non-consistent variables. Since the provided data-set for primary production covers a relatively short time-scale, it was neither possible to confidently validate the model

A validated dynamic model of the first marine molten carbonate fuel cell

International Nuclear Information System (INIS)

Ovrum, E.; Dimopoulos, G.

2012-01-01

In this work we present a modular, dynamic and multi-dimensional model of a molten carbonate fuel cell (MCFC) onboard the offshore supply vessel “Viking Lady” serving as an auxiliary power unit. The model is able to capture detailed thermodynamic, heat transfer and electrochemical reaction phenomena within the fuel cell layers. The model has been calibrated and validated with measured performance data from a prototype installation onboard the vessel. The model is able to capture detailed thermodynamic, heat transfer and electrochemical reaction phenomena within the fuel cell layers. The model has been calibrated and validated with measured performance data from a prototype installation onboard the offshore supply vessel. The calibration process included parameter identification, sensitivity analysis to identify the critical model parameters, and iterative calibration of these to minimize the overall prediction error. The calibrated model has a low prediction error of 4% for the operating range of the cell, exhibiting at the same time a physically sound qualitative behavior in terms of thermodynamic heat transfer and electrochemical phenomena, both on steady-state and transient operation. The developed model is suitable for a wide range of studies covering the aspects of thermal efficiency, performance, operability, safety and endurance/degradation, which are necessary to introduce fuel cells in ships. The aim of this MCFC model is to aid to the introduction, design, concept approval and verification of environmentally friendly marine applications such as fuel cells, in a cost-effective, fast and safe manner. - Highlights: ► We model the first marine molten carbonate fuel cell auxiliary power unit. ► The model is distributed spatially and models both steady state and transients. ► The model is validated against experimental data. ► The paper illustrates how the model can be used in safety and reliability studies.

Heterologous expression of Anabaena PCC 7120 all3940 (a Dps family gene) protects Escherichia coli from nutrient limitation and abiotic stresses

International Nuclear Information System (INIS)

Narayan, Om Prakash; Kumari, Nidhi; Rai, Lal Chand

2010-01-01

This study presents first hand data on the cloning and heterologous expression of Anabaena PCC 7120 all3940 (a dps family gene) in combating nutrients limitation and multiple abiotic stresses. The Escherichia coli transformed with pGEX-5X-2-all3940 construct when subjected to iron, carbon, nitrogen, phosphorus limitation and carbofuron, copper, UV-B, heat, salt and cadmium stress registered significant increase in growth over the cells transformed with empty vector under iron (0%), carbon (0.05%), nitrogen (3.7 mM) and phosphorus (2 mM) limitation and carbofuron (0.025 mg ml -1 ), CuCl 2 (1 mM), UV-B (10 min), heat (47 o C), NaCl (6% w/v) and CdCl 2 (4 mM) stress. Enhanced expression of all3940 gene measured by semi-quantitative RT-PCR at different time points under above mentioned treatments clearly demonstrates its role in tolerance against aforesaid abiotic stresses. This study opens the gate for developing transgenic cyanobacteria capable of growing successfully under above mentioned stresses.

Designing cooperatively folded abiotic uni- and multimolecular helix bundles

Science.gov (United States)

de, Soumen; Chi, Bo; Granier, Thierry; Qi, Ting; Maurizot, Victor; Huc, Ivan

2018-01-01

Abiotic foldamers, that is foldamers that have backbones chemically remote from peptidic and nucleotidic skeletons, may give access to shapes and functions different to those of peptides and nucleotides. However, design methodologies towards abiotic tertiary and quaternary structures are yet to be developed. Here we report rationally designed interactional patterns to guide the folding and assembly of abiotic helix bundles. Computational design facilitated the introduction of hydrogen-bonding functionalities at defined locations on the aromatic amide backbones that promote cooperative folding into helix-turn-helix motifs in organic solvents. The hydrogen-bond-directed aggregation of helices not linked by a turn unit produced several thermodynamically and kinetically stable homochiral dimeric and trimeric bundles with structures that are distinct from the designed helix-turn-helix. Relative helix orientation within the bundles may be changed from parallel to tilted on subtle solvent variations. Altogether, these results prefigure the richness and uniqueness of abiotic tertiary structure behaviour.

OAE2 in marine sections at high northern palaeolatitudes?

DEFF Research Database (Denmark)

Lenniger, Marc; Pedersen, Gunver Krarup; Bjerrum, Christian J.

oceanic anoxic events is the Cenomanian–Turonian boundary event (OAE2). The event is characterised by a major positive d13C excursion (ca. 2-4 ‰) in marine carbonate and both marine and terrestrial organic matter, which indicates that a major disturbance of the global carbon cycle occurred in the ocean...

Response of marine and freshwater algae to nitric acid and elevated carbon dioxide levels simulating environmental effects of bolide impact

Science.gov (United States)

Boston, P. J.

1988-01-01

One of the intriguing facets of the Cretaceous-Tertiary extinction is the apparently selective pattern of mortality amongst taxa. Some groups of organisms were severely affected and some remained relatively unscathed as they went through the K/T boundary. While there is argument concerning the exact interpretation of the fossil record, one of the best documented extinctions at the Cretaceous-Tertiary boundary is that of the calcareous nannoplankton. These organisms include coccolithic algae and foraminiferans. Attempts to explain their decline at the K/T boundary center around chemistry which could affect their calcium carbonate shells while leaving their silica-shelled cousins less affected or unaffected. Two environmental consequences of an extraterrestrial body impact which were suggested are the production of large quantities of nitrogen oxides generated by the shock heating of the atmosphere and the possible rise in CO2 from the dissolution of CaCO3 shells. Both of these phenomena would acidify the upper layers of the oceans and bodies of freshwater not otherwise buffered. The effects of nitric acid, carbon dioxide, or both factors on the growth and reproduction of calcareous marine coccoliths and non-calcareous marine and freshwater species of algae were considered. These experiments demonstrate that nitric acid and carbon dioxide have significant effects on important aspects of the physiology and reproduction of modern algae representative of extinct taxa thought to have suffered significant declines at the Cretaceous-Tertiary boundary. Furthermore, calcareous species showed more marked effects than siliceous species and marine species tested were more sensitive than freshwater species.

Dissolved inorganic carbon and alkalinity fluxes from coastal marine sediments: Model estimates for different shelf environments and sensitivity to global change

NARCIS (Netherlands)

Krumins, V.; Gehlen, M.; Arndt, S.; Van Cappellen, P.; Regnier, P.

2013-01-01

We present a one-dimensional reactive transport model to estimate benthic fluxes of dissolved inorganic carbon (DIC) and alkalinity (AT) from coastal marine sediments. The model incorporates the transport processes of sediment accumulation, molecular diffusion, bioturbation and bioirrigation,

Interdependence of specialization and biodiversity in Phanerozoic marine invertebrates.

Science.gov (United States)

Nürnberg, Sabine; Aberhan, Martin

2015-03-17

Studies of the dynamics of biodiversity often suggest that diversity has upper limits, but the complex interplay between ecological and evolutionary processes and the relative role of biotic and abiotic factors that set upper limits to diversity are poorly understood. Here we statistically assess the relationship between global biodiversity and the degree of habitat specialization of benthic marine invertebrates over the Phanerozoic eon. We show that variation in habitat specialization correlates positively with changes in global diversity, that is, times of high diversity coincide with more specialized faunas. We identify the diversity dynamics of specialists but not generalists, and origination rates but not extinction rates, as the main drivers of this ecological interdependence. Abiotic factors fail to show any significant relationship with specialization. Our findings suggest that the overall level of specialization and its fluctuations over evolutionary timescales are controlled by diversity-dependent processes--driven by interactions between organisms competing for finite resources.

Carbon dioxide storage in marine sediments - dissolution, transport and hydrate formation kinetics from high-pressure experiments

Science.gov (United States)

Bigalke, N. K.; Savy, J. P.; Pansegrau, M.; Aloisi, G.; Kossel, E.; Haeckel, M.

2009-12-01

By satisfying thermodynamic framework conditions for CO2 hydrate formation, pressures and temperatures of the deep marine environment are unique assets for sequestering CO2 in clathrates below the seabed. However, feasibility and safety of this storage option require an accurate knowledge of the rate constants governing the speed of physicochemical reactions following the injection of the liquefied gas into the sediments. High-pressure experiments designed to simulate the deep marine environment open the possibility to obtain the required parameters for a wide range of oceanic conditions. In an effort to constrain mass transfer coefficients and transport rates of CO2 in(to) the pore water of marine sediments first experiments were targeted at quantifying the rate of CO2 uptake by de-ionized water and seawater across a two-phase interface. The nature of the interface was controlled by selecting p and T to conditions within and outside the hydrate stability field (HSF) while considering both liquid and gaseous CO2. Concentration increase and hydrate growth were monitored by Raman spectroscopy. The experiments revealed anomalously fast transport rates of dissolved CO2 at conditions both inside and outside the HSF. While future experiments will further elucidate kinetics of CO2 transport and hydrate formation, these first results could have major significance to safety-related issues in the discussion of carbon storage in the marine environment.

Impact of atmospheric and terrestrial CO2 feedbacks on fertilization-induced marine carbon uptake

Science.gov (United States)

Oschlies, A.

2009-08-01

The sensitivity of oceanic CO2 uptake to alterations in the marine biological carbon pump, such as brought about by natural or purposeful ocean fertilization, has repeatedly been investigated by studies employing numerical biogeochemical ocean models. It is shown here that the results of such ocean-centered studies are very sensitive to the assumption made about the response of the carbon reservoirs on the atmospheric side of the sea surface. Assumptions made include prescribed atmospheric pCO2, an interactive atmospheric CO2 pool exchanging carbon with the ocean but not with the terrestrial biosphere, and an interactive atmosphere that exchanges carbon with both oceanic and terrestrial carbon pools. The impact of these assumptions on simulated annual to millennial oceanic carbon uptake is investigated for a hypothetical increase in the C:N ratio of the biological pump and for an idealized enhancement of phytoplankton growth. Compared to simulations with interactive atmosphere, using prescribed atmospheric pCO2 overestimates the sensitivity of the oceanic CO2 uptake to changes in the biological pump, by about 2%, 25%, 100%, and >500% on annual, decadal, centennial, and millennial timescales, respectively. The smaller efficiency of the oceanic carbon uptake under an interactive atmosphere is due to the back flux of CO2 that occurs when atmospheric CO2 is reduced. Adding an interactive terrestrial carbon pool to the atmosphere-ocean model system has a small effect on annual timescales, but increases the simulated fertilization-induced oceanic carbon uptake by about 4%, 50%, and 100% on decadal, centennial, and millennial timescales, respectively, for pCO2 sensitivities of the terrestrial carbon storage in the middle range of the C4MIP models (Friedlingstein et al., 2006). For such sensitivities, a substantial fraction of oceanic carbon uptake induced by natural or purposeful ocean fertilization originates, on timescales longer than decades, not from the atmosphere

Late-Holocene marine radiocarbon reservoir correction (ΔR) for the west coast of South Africa

CSIR Research Space (South Africa)

Dewar, G

2012-06-01

Full Text Available In order to calibrate radiocarbon ages based on samples with a marine carbon component it is important to know the marine carbon reservoir correction or ΔR value. This study measured the ΔR on both known-age pre-bomb marine shells and paired marine...

Abiotic versus biotic drivers of ocean pH variation under fast sea ice in McMurdo Sound, Antarctica.

Directory of Open Access Journals (Sweden)

Paul G Matson

Full Text Available Ocean acidification is expected to have a major effect on the marine carbonate system over the next century, particularly in high latitude seas. Less appreciated is natural environmental variation within these systems, particularly in terms of pH, and how this natural variation may inform laboratory experiments. In this study, we deployed sensor-equipped moorings at 20 m depths at three locations in McMurdo Sound, comprising deep (bottom depth>200 m: Hut Point Peninsula and shallow environments (bottom depth ∼25 m: Cape Evans and New Harbor. Our sensors recorded high-frequency variation in pH (Hut Point and Cape Evans only, tide (Cape Evans and New Harbor, and water mass properties (temperature and salinity during spring and early summer 2011. These collective observations showed that (1 pH differed spatially both in terms of mean pH (Cape Evans: 8.009±0.015; Hut Point: 8.020±0.007 and range of pH (Cape Evans: 0.090; Hut Point: 0.036, and (2 pH was not related to the mixing of two water masses, suggesting that the observed pH variation is likely not driven by this abiotic process. Given the large daily fluctuation in pH at Cape Evans, we developed a simple mechanistic model to explore the potential for biotic processes--in this case algal photosynthesis--to increase pH by fixing carbon from the water column. For this model, we incorporated published photosynthetic parameters for the three dominant algal functional groups found at Cape Evans (benthic fleshy red macroalgae, crustose coralline algae, and sea ice algal communities to estimate oxygen produced/carbon fixed from the water column underneath fast sea ice and the resulting pH change. These results suggest that biotic processes may be a primary driver of pH variation observed under fast sea ice at Cape Evans and potentially at other shallow sites in McMurdo Sound.

Abiotic versus biotic drivers of ocean pH variation under fast sea ice in McMurdo Sound, Antarctica.

Science.gov (United States)

Matson, Paul G; Washburn, Libe; Martz, Todd R; Hofmann, Gretchen E

2014-01-01

Ocean acidification is expected to have a major effect on the marine carbonate system over the next century, particularly in high latitude seas. Less appreciated is natural environmental variation within these systems, particularly in terms of pH, and how this natural variation may inform laboratory experiments. In this study, we deployed sensor-equipped moorings at 20 m depths at three locations in McMurdo Sound, comprising deep (bottom depth>200 m: Hut Point Peninsula) and shallow environments (bottom depth ∼25 m: Cape Evans and New Harbor). Our sensors recorded high-frequency variation in pH (Hut Point and Cape Evans only), tide (Cape Evans and New Harbor), and water mass properties (temperature and salinity) during spring and early summer 2011. These collective observations showed that (1) pH differed spatially both in terms of mean pH (Cape Evans: 8.009±0.015; Hut Point: 8.020±0.007) and range of pH (Cape Evans: 0.090; Hut Point: 0.036), and (2) pH was not related to the mixing of two water masses, suggesting that the observed pH variation is likely not driven by this abiotic process. Given the large daily fluctuation in pH at Cape Evans, we developed a simple mechanistic model to explore the potential for biotic processes--in this case algal photosynthesis--to increase pH by fixing carbon from the water column. For this model, we incorporated published photosynthetic parameters for the three dominant algal functional groups found at Cape Evans (benthic fleshy red macroalgae, crustose coralline algae, and sea ice algal communities) to estimate oxygen produced/carbon fixed from the water column underneath fast sea ice and the resulting pH change. These results suggest that biotic processes may be a primary driver of pH variation observed under fast sea ice at Cape Evans and potentially at other shallow sites in McMurdo Sound.

Interannual variability in seagrass carbon and nitrogen stable isotopes from the Florida Keys National Marine Sanctuary, a preliminary study

Science.gov (United States)

Fourqurean, J. W.; Fourqurean, J. W.; Anderson, W. T.; Anderson, W. T.

2001-12-01

The shallow marine waters surrounding the southern tip of Florida provide an ideal environment for seagrasses, which are the most common benthic community in the region. Yet, these communities are susceptible to a variety of anthropogenic disturbances, especially changes in water quality caused by an increase the nutrient flux to the near shore environment. In order to better understand the carbon and nitrogen isotopic ratio in marine plants, an extensive times series analysis was constructed from quarterly sampling of Thalassia testudinum (the dominate species in the study area) from 1996 through 1998. Sites for study where selected from permanent stations within the Florida Keys National Marine Sanctuary (FKNMS), from both sides of the Florida Keys - two stations on the bay side and two stations on the reef side. These data will also help to constrain elements of the carbon and nitrogen cycles affecting this region. The data analyzed over the three year study period show unique cyclic trends associated with seasonal changes in primary productivity and potentially changes in the nitrogen and carbon pools. Additionally, the analysis of our time series indicates that isotope food web studies need to take into account spatial and temporal changes when evaluating trophic levels. The mean carbon and nitrogen isotope values of T. testudinum from all 4 stations vary respectively from -7.2 per mil to -10.41 and 1.1 per mil to 2.2 per mil (n = 48). However, certain stations displayed anonymously depleted nitrogen isotope values, values as low as -1.2 per mil. These values potentially indicated that biogeochmical processes like N fixation, ammonification and denitrification cause regional pattern in the isotopic composition of the source DIN. Both carbon and nitrogen isotopes displayed seasonal enrichment-depletion trends, with maximum enrichment occurring during the summer. The overall seasonal variation for carbon 13 from the different stations ranged from 1 per mil to

Quantification of the "global" authigenic carbonate δ13C value and implications for carbon cycling

Science.gov (United States)

Loyd, S. J.

2017-12-01

Relationships among early Earth ocean chemistry, atmospheric chemistry and the evolution/radiation of life have been inferred from carbon isotope compositions (δ13C) of marine carbonates. Under steady-state conditions, the isotope compositions of marine carbonates reflect both the amount and δ13C of carbon entering and leaving the oceans. Recently the traditional "two-output" (marine carbonate and organic matter) mass-balance equation has been modified to include a third, authigenic carbonate output term. However, the formation mechanisms of authigenic carbonates remain poorly understood, particularly from a global prospective. The utility of the new mass-balance approach will be limited until authigenic carbonates are better characterized (e.g., through δ13C analyses). Authigenic carbonates form largely as a result of 1) the respiratory degradation of organic matter (e.g., sulfate reduction), 2) the oxidation of methane and 3) the production of methane. These major reaction pathways can produce authigenic carbonates with highly variable δ13C compositions (δ13Cac). Spatiotemporal variation in the extent and prevalence of different pathways therefore exert a first order control on "global" δ13Cac. Here, values are compiled from new and existing data sets and a modern, global δ13Cac is calculated. When calculated as an average of all data or an averaged mean of individual sites, this value is very similar to normal marine sedimentary organic matter. This finding suggests that marine sediments behave largely as closed systems in the context of organic matter degradation and carbonate authigenesis. In addition, the lack of significant difference between authigenic and organic δ13C implies that these two mass-balance output terms can be considered collectively in more recent time intervals. It may be appropriate to separate these two terms when characterizing more ancient settings when redox characteristics promoted more reducing organic matter degradation

Both sulfate-reducing bacteria and Enterobacteriaceae take part in marine biocorrosion of carbon steel.

Science.gov (United States)

Bermont-Bouis, D; Janvier, M; Grimont, P A D; Dupont, I; Vallaeys, T

2007-01-01

In order to evaluate the part played in biocorrosion by microbial groups other than sulfate-reducing bacteria (SRB), we characterized the phylogenetic diversity of a corrosive marine biofilm attached to a harbour pile structure as well as to carbon steel surfaces (coupons) immersed in seawater for increasing time periods (1 and 8 months). We thus experimentally checked corroding abilities of defined species mixtures. Microbial community analysis was performed using both traditional cultivation techniques and polymerase chain reaction cloning-sequencing of 16S rRNA genes. Community structure of biofilms developing with time on immersed coupons tended to reach after 8 months, a steady state similar to the one observed on a harbour pile structure. Phylogenetic affiliations of isolates and cloned 16S rRNA genes (rrs) indicated that native biofilms (developing after 1-month immersion) were mainly colonized by gamma-proteobacteria. Among these, Vibrio species were detected in majority with molecular methods while cultivation techniques revealed dominance of Enterobacteriaceae such as Citrobacter, Klebsiella and Proteus species. Conversely, in mature biofilms (8-month immersion and pile structure), SRB, and to a lesser extent, spirochaetes were dominant. Corroding activity detection assays confirmed that Enterobacteriaceae (members of the gamma-proteobacteria) were involved in biocorrosion of metallic material in marine conditions. In marine biofilms, metal corrosion may be initiated by Enterobacteriaceae.

Recent Molecular Advances on Downstream Plant Responses to Abiotic Stress

Directory of Open Access Journals (Sweden)

Cláudia Regina Batista de Souza

2012-07-01

Full Text Available Abiotic stresses such as extremes of temperature and pH, high salinity and drought, comprise some of the major factors causing extensive losses to crop production worldwide. Understanding how plants respond and adapt at cellular and molecular levels to continuous environmental changes is a pre-requisite for the generation of resistant or tolerant plants to abiotic stresses. In this review we aimed to present the recent advances on mechanisms of downstream plant responses to abiotic stresses and the use of stress-related genes in the development of genetically engineered crops.

Use of carbonates for biological and chemical synthesis

Science.gov (United States)

Rau, Gregory Hudson

2014-09-09

A system of using carbonates, especially water-insoluble or sparing soluble mineral carbonates, for maintaining or increasing dissolved inorganic carbon concentrations in aqueous media. In particular, the system generates concentrated dissolve inorganic carbon substrates for photosynthetic, chemosynthetic, or abiotic chemical production of carbonaceous or other compounds in solution. In some embodiments, the invention can also enhance the dissolution and retention of carbon dioxide in aqueous media, and can produce pH buffering capacity, metal ions, and heat, which can be beneficial to the preceding syntheses.

Tracking Early Jurassic marine (de)oxygenation

Science.gov (United States)

Them, T. R., II; Caruthers, A. H.; Gill, B. C.; Gröcke, D. R.; Marroquín, S. M.; Owens, J. D.

2017-12-01

It has been suggested that the carbon cycle was perturbed during the Toarcian OAE (T-OAE) as observed in the carbon isotope record, and more recently other elemental cycles (e.g., Hg, Mo, Os, S). The most widely accepted hypothesis focuses on the emplacement of the Karoo-Ferrar large igneous province, outgassing of greenhouse gases, and subsequent feedbacks in the Earth system, which caused severe environmental change and biological turnover. Feedbacks to elevated atmospheric pCO2 include enhanced weathering rates, dissociation of methane clathrates, increased terrestrial methanogenesis, and widespread marine anoxia. The sequence of events related to the development and duration of marine anoxia are not well constrained for this time interval due to a lack of open-ocean geochemical records. In order to reconstruct the timing of marine deoxygenation during the Early Jurassic T-OAE, we have utilized thallium isotopes, a novel geochemical proxy from multiple anoxic basins in North America and Germany. Three sites representing a basin transect from the Western Canada Sedimentary Basin, and one site from the South German Basin, were chosen to reconstruct the thallium isotopic composition (ɛ205Tl) of the ocean. The ɛ205Tl composition of sediments deposited under anoxic and euxinic water columns records the global seawater ɛ205Tl composition, a function of the amount of manganese oxides that are precipitated. Increased geographic extent of marine anoxia will cause a decrease in manganese oxide precipitation and perturb the thallium system. Importantly, the inputs of thallium are nearly identical, thus changes in these fluxes cannot drive the observed perturbation. Our new Early Jurassic ɛ205Tl records suggest that the onset of marine deoxygenation occurred concurrently with Karoo-Ferrar magmatism in the late Pliensbachian and continued until after the T-OAE. These new data support a Karoo-Ferrar trigger of the T-OAE. However, thallium isotopes also suggest that

Phytohormones and their metabolic engineering for abiotic stress tolerance in crop plants

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Shabir H. Wani

2016-06-01

Full Text Available Abiotic stresses including drought, salinity, heat, cold, flooding, and ultraviolet radiation causes crop losses worldwide. In recent times, preventing these crop losses and producing more food and feed to meet the demands of ever-increasing human populations have gained unprecedented importance. However, the proportion of agricultural lands facing multiple abiotic stresses is expected only to rise under a changing global climate fueled by anthropogenic activities. Identifying the mechanisms developed and deployed by plants to counteract abiotic stresses and maintain their growth and survival under harsh conditions thus holds great significance. Recent investigations have shown that phytohormones, including the classical auxins, cytokinins, ethylene, and gibberellins, and newer members including brassinosteroids, jasmonates, and strigolactones may prove to be important metabolic engineering targets for producing abiotic stress-tolerant crop plants. In this review, we summarize and critically assess the roles that phytohormones play in plant growth and development and abiotic stress tolerance, besides their engineering for conferring abiotic stress tolerance in transgenic crops. We also describe recent successes in identifying the roles of phytohormones under stressful conditions. We conclude by describing the recent progress and future prospects including limitations and challenges of phytohormone engineering for inducing abiotic stress tolerance in crop plants.

Structure, function and networks of transcription factors involved in abiotic stress responses

DEFF Research Database (Denmark)

Lindemose, Søren; O'Shea, Charlotte; Jensen, Michael Krogh

2013-01-01

Transcription factors (TFs) are master regulators of abiotic stress responses in plants. This review focuses on TFs from seven major TF families, known to play functional roles in response to abiotic stresses, including drought, high salinity, high osmolarity, temperature extremes...... and the phytohormone ABA. Although ectopic expression of several TFs has improved abiotic stress tolerance in plants, fine-tuning of TF expression and protein levels remains a challenge to avoid crop yield loss. To further our understanding of TFs in abiotic stress responses, emerging gene regulatory networks based...... on TFs and their direct targets genes are presented. These revealed components shared between ABA-dependent and independent signaling as well as abiotic and biotic stress signaling. Protein structure analysis suggested that TFs hubs of large interactomes have extended regions with protein intrinsic...

The shifting influence of abiotic drivers during landslide succession in Puerto Rico

Science.gov (United States)

L. R. Walker; A. B. Shiels; P. J. Bellingham; A. D. Sparrow; N. Fetcher; F. H. Landau; D. J. Lodge

2013-01-01

Summary 1. Abiotic variables are critical drivers of succession in most primary seres, but how their influence on biota changes over time is rarely examined. Landslides provide good model systems for examining abiotic influences because they are spatially and temporally heterogeneous habitats with distinct abiotic and biotic gradients and post-landslide erosion. 2. In...

Design of a supercritical carbon dioxide cooled reactor for marine applications

International Nuclear Information System (INIS)

Bollardiere, T. Paris de; Verchere, T.; Wilson, M.; O'Sullivan, P.; Heap, S.; Thompson, A.; Jewer, S.; Beeley, P.A.

2009-01-01

The reactor physics and thermal hydraulics aspects of a feasibility study conducted to assess the potential of a supercritical carbon dioxide (sCO2) cooled nuclear reactor for marine propulsion are presented. Supercritical carbon dioxide cycles have been proposed for next generation nuclear plants as such cycles take advantage of sCO2 property changes near the critical point which leads to improved plant efficiency over existing nuclear plant cycles at the same temperatures and pressures. Selecting two 192 MWth cores and a recompression Brayton cycle it was determined that a maximum power conversion efficiency of 47.5 % could be achieved. The core design employs TRISO particles in a graphite matrix forming a fuelled annulus in a prismatic graphite moderating block. The design of this plant has been modeled using WIMS/MONK (neutronics) and Flownex (plant thermal hydraulics and power conversion). Plant modeling found that the core remains within thermal safety limits in the event of a LOCA. The major limitation of the design was found to be the high xenon levels produced as a result of the high neutron flux required of a gas cooled reactor and the effect it has on the versatility of the plant to cope with changes in power demand. (author)

Complex carbon cycling processes and pathways in a tropical coastal marine environment (Saco do Mamangua, RJ - Brazil)

Science.gov (United States)

Giorgioni, M.; Jovane, L.; Millo, C.; Sawakuchi, H. O.; Bertassoli, D. J., Jr.; Gamba Romano, R.; Pellizari, V.; Castillo Franco, D.; Krusche, A. V.

2016-12-01

The Saco do Mamangua is a narrow and elongated gulf located along the southeastern coast of Brazil, in the state of Rio de Janeiro (RJ). It is surrounded by high relieves, which form a peculiar environment called riá, with little river input and limited water exchange with the Atlantic Ocean. These features make the Saco do Mamangua an ideal environment to study sedimentary carbon cycling under well-constrained boundary conditions in order to investigate if tropical coastal environments serve dominantly as potential carbon sinks or sources. In this work we integrate geochemical data from marine sediments and pore waters in the Saco do Mamangua with mapping of benthic microbial communities, in order to unravel the biogeochemical carbon cycling linked to the production of biogenic methane. Our results reveal that carbon cycling occurs in two parallel pathways. The Saco do Mamangua receives organic carbon both by surface runoff and by primary production in the water column. A large part of this organic carbon is buried within the sediment resulting in the production of biogenic methane, which gives rise to methane seepages at the sea floor. These methane seeps sustain methanotrophic microbial communities in the sediment pore water, but also escapes into the atmosphere by ebullition. Consequently, the sediments of Saco do Mamangua acts simultaneously as carbon sink and carbon source. Future work will allow us to accurately quantify the actual carbon fluxes and calculate the net carbon balance in the local environment.

The Cretaceous-Tertiary boundary marine extinction and global primary productivity collapse

Science.gov (United States)

Zachos, J. C.; Arthus, M. A.; Dean, W. E.

1988-01-01

The extinction of marine phyto-and zoo-plankton across the K-T boundary has been well documented. Such an event may have resulted in decreased photosynthetic fixation of carbon in surface waters and a collapse of the food chain in the marine biosphere. Because the vertical and horizontal distribution of the carbon isotopic composition of total dissolved carton (TDC) in the modern ocean is controlled by the transfer of organic carbon from the surface to deep reservoirs, it follows that a major disruption of the marine biosphere would have had a major effect on the distribution of carbon isotopes in the ocean. Negative carbon isotope excursions have been identified at many marine K-T boundary sequences worldwide and are interpreted as a signal of decreased oceanic primary productivity. However, the magnitude, duration and consequences of this productivity crisis have been poorly constrained. On the basis of planktonic and benthic calcareous microfossil carbon isotope and other geochemical data from DSDP Site 577 located on the Shatsky Rise in the north-central Pacific, as well as other sites, researchers have been able to provide a reasonable estimate of the duration and magnitude of this event.

Microbial Carbonate Precipitation by Synechococcus PCC8806, LS0519 and Synechocystis PCC6803 on Concrete Surfaces and in Low Saturation Solution

Science.gov (United States)

Zhu, T.; Lin, Y.; Dittrich, M.

2015-12-01

Microbial carbonate precipitation (MCP) by cyanobacteria has been recognized in a variety of environment such as freshwater, marine, cave, and even desert. Recently, their calcification potential has been tested in an emerging technology-- bioconcrete. This study is to explore the calcification by three cyanobacteria strains under different environmental conditions. Experiment A was carried out in 2mM NaHCO3 and 5mM CaCl2, with a cell concentration of 107 cells L-1. In experiment B, one side of the concrete surface was treated with bacteria and then immersed in the solution containing 0.4 mM NaHCO3 and 300 mM CaCl2. In experiment A, the pH of the abiotic condition remained constant around 8.55, while that of biotic conditions increased by 0.15 units in the presence of LS0519, and by 0.3 units in the presence of PCC8806 or PCC6803 within 8 hours. Over a period of 30 hours, PCC8806, LS0519 and PCC6803 removed 0.1, 0.12 and 0.2 mM calcium from the solution respectively. After 30 hours, the alkalinity of the solution decreased by 30 mg/L, 10 mg/L and 5 mg/L respectively in the presence of PCC6803, LS0519 and PCC8806. Under scanning electron microscopy (SEM), no precipitate was found in the abiotic condition, while calcium carbonate was associated by all the three strains. Among them, PCC6803 precipitated more carbonates. In experiment B, LS0519 and PCC8806 increased the pH with a value of 0.25, while PCC6803 increased the pH by 0.33 units. SEM shows LS0519 was less likely attached to the concrete surface. Neither did the precipitates on concrete surface differ from that in the abiotic condition. In comparison, PCC8806 and PCC6803 were closely associated with 8-μm porous precipitates. Cells were either found enclosed in precipitates or connecting two precipitates. In conclusion, all the three strains triggered the calcium carbonate precipitation. LS0519 has a little impact on the carbonate precipitation in the solution, but negligent influence on the concrete surface

Will marine productivity wane?

Science.gov (United States)

Laufkötter, Charlotte; Gruber, Nicolas

2018-03-01

If marine algae are impaired severely by global climate change, the resulting reduction in marine primary production would strongly affect marine life and the ocean's biological pump that sequesters substantial amounts of atmospheric carbon dioxide in the ocean's interior. Most studies, including the latest generation of Earth system models, project only moderate global decreases in biological production until 2100 (1, 2), suggesting that these concerns are unwarranted. But on page 1139 of this issue, Moore et al. (3) show that this conclusion might be shortsighted and that there may be much larger long-term changes in ocean productivity than previously appreciated.

The Arctic Ocean marine carbon cycle: evaluation of air-sea CO2 exchanges, ocean acidification impacts and potential feedbacks

Directory of Open Access Journals (Sweden)

N. R. Bates

2009-11-01

Full Text Available At present, although seasonal sea-ice cover mitigates atmosphere-ocean gas exchange, the Arctic Ocean takes up carbon dioxide (CO2 on the order of −66 to −199 Tg C year−1 (1012 g C, contributing 5–14% to the global balance of CO2 sinks and sources. Because of this, the Arctic Ocean has an important influence on the global carbon cycle, with the marine carbon cycle and atmosphere-ocean CO2 exchanges sensitive to Arctic Ocean and global climate change feedbacks. In the near-term, further sea-ice loss and increases in phytoplankton growth rates are expected to increase the uptake of CO2 by Arctic Ocean surface waters, although mitigated somewhat by surface warming in the Arctic. Thus, the capacity of the Arctic Ocean to uptake CO2 is expected to alter in response to environmental changes driven largely by climate. These changes are likely to continue to modify the physics, biogeochemistry, and ecology of the Arctic Ocean in ways that are not yet fully understood. In surface waters, sea-ice melt, river runoff, cooling and uptake of CO2 through air-sea gas exchange combine to decrease the calcium carbonate (CaCO3 mineral saturation states (Ω of seawater while seasonal phytoplankton primary production (PP mitigates this effect. Biological amplification of ocean acidification effects in subsurface waters, due to the remineralization of organic matter, is likely to reduce the ability of many species to produce CaCO3 shells or tests with profound implications for Arctic marine ecosystems

Multimodel inference to quantify the relative importance of abiotic factors in the population dynamics of marine zooplankton

Science.gov (United States)

Everaert, Gert; Deschutter, Yana; De Troch, Marleen; Janssen, Colin R.; De Schamphelaere, Karel

2018-05-01

The effect of multiple stressors on marine ecosystems remains poorly understood and most of the knowledge available is related to phytoplankton. To partly address this knowledge gap, we tested if combining multimodel inference with generalized additive modelling could quantify the relative contribution of environmental variables on the population dynamics of a zooplankton species in the Belgian part of the North Sea. Hence, we have quantified the relative contribution of oceanographic variables (e.g. water temperature, salinity, nutrient concentrations, and chlorophyll a concentrations) and anthropogenic chemicals (i.e. polychlorinated biphenyls) to the density of Acartia clausi. We found that models with water temperature and chlorophyll a concentration explained ca. 73% of the population density of the marine copepod. Multimodel inference in combination with regression-based models are a generic way to disentangle and quantify multiple stressor-induced changes in marine ecosystems. Future-oriented simulations of copepod densities suggested increased copepod densities under predicted environmental changes.

Carbon Stored on Seagrass Community in Marine Nature Tourism Park of Kotania Bay, Western Seram, Indonesia

Directory of Open Access Journals (Sweden)

Mintje Wawo

2014-04-01

Full Text Available Currently, the function of seagrass community as carbon storage has been discussed in line with “blue carbon” function of that seagrass has. Seagrass bed are a very valuable coastal ecosystem, however, seagrass bed is threatened if compared to other coastal ecosystems, such as mangroves and coral reefs. The threatened seagrass experienced also contributes to its capacity in absorbing CO2 emission from greenhouse gasses such as CO2 emission Temporal estimation shows that CO2 emission will increase in the coming decade. On the other side, efforts to decrease climate change can be influenced by the existence of seagrass. Informations about existence of seagrass as carbon storage are still very rare or limited. This study was aimed to estimate carbon storage on seagrass community in Marine Nature Tourism Park of Kotania Bay Area, Western Seram, Maluku Province. The quadrat transect method of 0.25 m2 for each plot was used to collect seagrass existence. The content of carbon in the sample of dry biomass of seagrass was analyzed in the laboratory using Walkley & Black method. The results showed that total carbon stored was higher in both Osi and Burung Islands of Kotania Bay than other studied areas (Buntal and Tatumbu Islands, Marsegu Island, Barnusang Peninsula, Loupessy and Tamanjaya Village. The average carbon stored in Kotania Bay waters was 2.385 Mg C ha-1, whereas the total of carbon stored was 2054.4967 Mg C.

Study of carbon dioxide (CO sub 2 ) problems through marine science. Kaiyo kara mita nisankatanso mondai

Energy Technology Data Exchange (ETDEWEB)

Honda, M [Japan Marine Science and Technology Center, Kanagawa (Japan)

1990-09-01

This paper reviews the researches relating to carbon dioxide circulation in oceans, and introduces the roles played by oceans in respect of the CO {sub 2} problem. Oceans occupy 70% of the globe {prime} s surface area, and contain 60 times as much of carbon as in the atmosphere. However, the amount of CO {sub 2} absorbed from the atmosphere into the oceans as has been estimated to date can not explain the carbon balance on earth. The exchange rate of CO {sub 2} between the atmosphere and the oceans was estimated from measurements of the partial pressure (PCO {sub 2}), and from behaviors of the radiocarbon ({sup 14} C). However, to raise the estimation accuracy, it is necessary to obtain data from the sea areas where observations are carried out only infrequently, and from the winter season during which the observation frequency is low. Identifying variations in organic and inorganic carbon amount generated by marine organisms is also important. Since more than 99.9% of carbon is present in the form of carbonate, it is required that its amount, and the amount of precipitation and dissolution per unit time be identified, and that CO {sub 2} removed from the carbon cycle be quantified. What is particularly required is the study of open-sea bottom deposits, and the coastal study with coral reefs as the main object. 40 refs., 30 figs., 11 tabs.

Protein metabolism in marine animals: the underlying mechanism of growth.

Science.gov (United States)

Fraser, Keiron P P; Rogers, Alex D

2007-01-01

Growth is a fundamental process within all marine organisms. In soft tissues, growth is primarily achieved by the synthesis and retention of proteins as protein growth. The protein pool (all the protein within the organism) is highly dynamic, with proteins constantly entering the pool via protein synthesis or being removed from the pool via protein degradation. Any net change in the size of the protein pool, positive or negative, is termed protein growth. The three inter-related processes of protein synthesis, degradation and growth are together termed protein metabolism. Measurement of protein metabolism is vital in helping us understand how biotic and abiotic factors affect growth and growth efficiency in marine animals. Recently, the developing fields of transcriptomics and proteomics have started to offer us a means of greatly increasing our knowledge of the underlying molecular control of protein metabolism. Transcriptomics may also allow us to detect subtle changes in gene expression associated with protein synthesis and degradation, which cannot be detected using classical methods. A large literature exists on protein metabolism in animals; however, this chapter concentrates on what we know of marine ectotherms; data from non-marine ectotherms and endotherms are only discussed when the data are of particular relevance. We first consider the techniques available to measure protein metabolism, their problems and what validation is required. Protein metabolism in marine organisms is highly sensitive to a wide variety of factors, including temperature, pollution, seasonality, nutrition, developmental stage, genetics, sexual maturation and moulting. We examine how these abiotic and biotic factors affect protein metabolism at the level of whole-animal (adult and larval), tissue and cellular protein metabolism. Available gene expression data, which help us understand the underlying control of protein metabolism, are also discussed. As protein metabolism appears to

Alternative Oxidase: A Mitochondrial Respiratory Pathway to Maintain Metabolic and Signaling Homeostasis during Abiotic and Biotic Stress in Plants

Directory of Open Access Journals (Sweden)

Greg C. Vanlerberghe

2013-03-01

Full Text Available Alternative oxidase (AOX is a non-energy conserving terminal oxidase in the plant mitochondrial electron transport chain. While respiratory carbon oxidation pathways, electron transport, and ATP turnover are tightly coupled processes, AOX provides a means to relax this coupling, thus providing a degree of metabolic homeostasis to carbon and energy metabolism. Beside their role in primary metabolism, plant mitochondria also act as “signaling organelles”, able to influence processes such as nuclear gene expression. AOX activity can control the level of potential mitochondrial signaling molecules such as superoxide, nitric oxide and important redox couples. In this way, AOX also provides a degree of signaling homeostasis to the organelle. Evidence suggests that AOX function in metabolic and signaling homeostasis is particularly important during stress. These include abiotic stresses such as low temperature, drought, and nutrient deficiency, as well as biotic stresses such as bacterial infection. This review provides an introduction to the genetic and biochemical control of AOX respiration, as well as providing generalized examples of how AOX activity can provide metabolic and signaling homeostasis. This review also examines abiotic and biotic stresses in which AOX respiration has been critically evaluated, and considers the overall role of AOX in growth and stress tolerance.

Stable carbon isotope response to oceanic anoxic events

International Nuclear Information System (INIS)

Hu Xiumian; Wang Chengshan; Li Xianghui

2001-01-01

Based on discussion of isotope compositions and fractionation of marine carbonate and organic carbon, the author studies the relationship between oceanic anoxic events and changes in the carbon isotope fractionation of both carbonate and organic matter. During the oceanic anoxic events, a great number of organisms were rapidly buried, which caused a kind of anoxic conditions by their decomposition consuming dissolved oxygen. Since 12 C-rich organism preserved, atmosphere-ocean system will enrich relatively of 13 C. As a result, simultaneous marine carbonate will record the positive excursion of carbon isotope. There is a distinctive δ 13 C excursion during oceanic anoxic events in the world throughout the geological time. In the Cenomanian-Turonian anoxic event. this positive excursion arrived at ∼0.2% of marine carbonate and at ∼0.4% of organic matter, respectively. Variations in the carbon isotopic compositions of marine carbonate and organic carbon record the changes in the fraction of organic carbon buried throughout the geological time and may provide clues to the changes in rates of weathering and burial of organic carbon. This will provide a possibility of interpreting not only the changes in the global carbon cycle throughout the geological time, but also that in atmospheric p CO 2

Revisiting the Role of Plant Transcription Factors in the Battle against Abiotic Stress.

Science.gov (United States)

Khan, Sardar-Ali; Li, Meng-Zhan; Wang, Suo-Min; Yin, Hong-Ju

2018-05-31

Owing to diverse abiotic stresses and global climate deterioration, the agricultural production worldwide is suffering serious losses. Breeding stress-resilient crops with higher quality and yield against multiple environmental stresses via application of transgenic technologies is currently the most promising approach. Deciphering molecular principles and mining stress-associate genes that govern plant responses against abiotic stresses is one of the prerequisites to develop stress-resistant crop varieties. As molecular switches in controlling stress-responsive genes expression, transcription factors (TFs) play crucial roles in regulating various abiotic stress responses. Hence, functional analysis of TFs and their interaction partners during abiotic stresses is crucial to perceive their role in diverse signaling cascades that many researchers have continued to undertake. Here, we review current developments in understanding TFs, with particular emphasis on their functions in orchestrating plant abiotic stress responses. Further, we discuss novel molecular mechanisms of their action under abiotic stress conditions. This will provide valuable information for understanding regulatory mechanisms to engineer stress-tolerant crops.

Development of a functionalized coating for inhibition of marine corrosion and biofouling

Science.gov (United States)

Gittens, Jeanette Elizabeth

The financial loss incurred by corrosion of metals in the marine environment has led to a need to develop effective, economic and environmentally friendly methods of protection. Traditional methods of counteracting the development of surface biofilms and biofouling within aqueous environments have involved implementing chemical biocides, often with a deleterious effect on non-target organisms. Sol gel coating technology offers a convenient route for immobilizing functional additives, such as inhibitors or, in the case of this study, biologically active microorganisms. Paenibacillus polymyxa biofilms inhibit the corrosion of metal substrates and this strain has the advantage of forming endospores can withstand the solvent and acid concentrations required in sol-gel formulation. Encapsulation of viable P. polymyxa endospores within the sol-gel matrix allowed germination on exposure to nutrients, when germinating endospores and vegetative cells were seen after fluorescence microscopy to be distributed throughout the coating. Laboratory electrochemical impedance tests were used to characterize the corrosion behaviour of the endospore-containing (biotic) sol-gel coating in comparison to an abiotic (no endospores) sol-gel only coating and one containing non-viable (killed) endospores. The technology enabled manipulation of the sol-gel formulation and the method of application to produce biotic sol-gel with enhanced corrosion inhibition properties on aluminium alloy. Field trials in a marine environment confirmed the corrosion protecting properties of the biotic coating and that the biotic coatings inhibited macroscopic biofouling for at least 29 weeks relative to the controls without encapsulated live endospores. Production of polymyxin by the encapsulated bacteria, which was proposed as a mechanism by which they inhibit MIC, was less than 1 mug per ml and below the threshold of detection by liquid chromatography mass spectrometry and antimicrobial bioassay. Microcosm

Photosynthesis, respiration, and carbon turnover in sinking marine snow from surface waters of Southern California Bight: implications for the carbon cycle in the ocean

DEFF Research Database (Denmark)

Ploug, Helle; Grossart, Hans-Peter; Azam, F.

1999-01-01

Photosynthesis and respiration were measured in 1 to 6 mm large aggregates (marine snow) collected in the Southern Californian Eight, USA. The aggregates were freely sinking in a vertical flow system with an upward flow velocity which opposed the sinking velocity of individual aggregates during...... techniques. Both the respiration rate per aggregate volume and the bacterial densities decreased with increasing aggregate size. The respiration rates normalized to the number of bacteria in single aggregates were 7.4 to 70 fmol C cell(-1) d(-1). The aggregate community respired 433 to 984 ng C d(-1) per...... aggregate in darkness, which yielded a turnover time of 8 to 9 d for the total organic carbon in aggregates. Thus, marine snow is not only a vehicle for vertical flux of organic matter; the aggregates are also hotspots of microbial respiration which cause a fast and efficient respiratory turnover...

Combined effects of Corexit EC 9500A with secondary abiotic and biotic factors in the rotifer Brachionus plicatilis.

Science.gov (United States)

Williams, Michael B; Powell, Mickie L; Watts, Stephen A

2016-10-01

We examined lethality and behavioral effects of Corexit EC 9500A (C-9500A) exposure on the model marine zooplankton Brachionus plicatilis singularly and in combination with abiotic and biotic factors. C-9500A exposure at standard husbandry conditions (17.5ppt, 24°C, 200 rotifer*mL(-1) density) identified the 24h median lethal concentration, by Probit analysis, to be 107ppm for cultured B. plicatilis. Rotifers surviving exposure to higher concentrations (100 and 150ppm) exhibited a decreased swimming velocity and a reduced net to gross movement ratio. Significant interaction between C-9500A exposure and temperature or salinity was observed. Upper thermal range was reduced and maximal salinity stress was seen as ca. 25ppt. Increased or decreased nutritional availability over the exposure period did not significantly alter mortality of B. plicatilis populations at the concentrations tested. Results from this study may be useful for predicting possible outcomes on marine zooplankton following dispersant application under diverse natural conditions. Copyright © 2016 Elsevier Inc. All rights reserved.

Chemical Priming of Plants Against Multiple Abiotic Stresses: Mission Possible?

KAUST Repository

Savvides, Andreas

2015-12-15

Crop plants are subjected to multiple abiotic stresses during their lifespan that greatly reduce productivity and threaten global food security. Recent research suggests that plants can be primed by chemical compounds to better tolerate different abiotic stresses. Chemical priming is a promising field in plant stress physiology and crop stress management. We review here promising chemical agents such as sodium nitroprusside, hydrogen peroxide, sodium hydrosulfide, melatonin, and polyamines that can potentially confer enhanced tolerance when plants are exposed to multiple abiotic stresses. The challenges and opportunities of chemical priming are addressed, with the aim to boost future research towards effective application in crop stress management.

Chemical Priming of Plants Against Multiple Abiotic Stresses: Mission Possible?

KAUST Repository

Savvides, Andreas; Ali, Shawkat; Tester, Mark A.; Fotopoulos, Vasileios

2015-01-01

Crop plants are subjected to multiple abiotic stresses during their lifespan that greatly reduce productivity and threaten global food security. Recent research suggests that plants can be primed by chemical compounds to better tolerate different abiotic stresses. Chemical priming is a promising field in plant stress physiology and crop stress management. We review here promising chemical agents such as sodium nitroprusside, hydrogen peroxide, sodium hydrosulfide, melatonin, and polyamines that can potentially confer enhanced tolerance when plants are exposed to multiple abiotic stresses. The challenges and opportunities of chemical priming are addressed, with the aim to boost future research towards effective application in crop stress management.

Additional insights into the adaptation of cotton plants under abiotic ...

African Journals Online (AJOL)

Abiotic stress is the primary cause of crop losses worldwide. In addition to protein coding genes, microRNAs (miRNAs) have emerged as important players in plant stress responses. Though miRNAs are key in regulating many aspects of plant developmental plasticity under abiotic stresses, very few information are available ...

The Role of MAPK Modules and ABA during Abiotic Stress Signaling

KAUST Repository

Zé licourt, Axel de; Colcombet, Jean; Hirt, Heribert

2016-01-01

To respond to abiotic stresses, plants have developed specific mechanisms that allow them to rapidly perceive and respond to environmental changes. The phytohormone abscisic acid (ABA) was shown to be a pivotal regulator of abiotic stress responses

Carbon Nanostructure of Diesel Soot Particles Emitted from 2 and 4 Stroke Marine Engines Burning Different Fuels.

Science.gov (United States)

Lee, Won-Ju; Park, Seul-Hyun; Jang, Se-Hyun; Kim, Hwajin; Choi, Sung Kuk; Cho, Kwon-Hae; Cho, Ik-Soon; Lee, Sang-Min; Choi, Jae-Hyuk

2018-03-01

Diesel soot particles were sampled from 2-stroke and 4-stroke engines that burned two different fuels (Bunker A and C, respectively), and the effects of the engine and fuel types on the structural characteristics of the soot particle were analyzed. The carbon nanostructures of the sampled particles were characterized using various techniques. The results showed that the soot sample collected from the 4-stroke engine, which burned Bunker C, has a higher degree of order of the carbon nanostructure than the sample collected from the 2-stroke engine, which burned Bunker A. Furthermore, the difference in the exhaust gas temperatures originating from the different engine and fuel types can affect the nanostructure of the soot emitted from marine diesel engines.

Assessing the potential of amino acid δ13C patterns as a carbon source tracer in marine sediments: effects of algal growth conditions and sedimentary diagenesis

Science.gov (United States)

Larsen, T.; Bach, L. T.; Salvatteci, R.; Wang, Y. V.; Andersen, N.; Ventura, M.; McCarthy, M. D.

2015-01-01

Burial of organic carbon in marine sediments has a profound influence in marine biogeochemical cycles, and provides a sink for greenhouse gases such as CO2 and CH4. However, tracing organic carbon from primary production sources as well as its transformations in the sediment record remains challenging. Here we examine a novel but growing tool for tracing biosynthetic origin of amino acid carbon skeletons, based on natural occurring stable carbon isotope patterns in individual amino acids (δ13CAA). We focus on two important aspects for δ13CAA utility in sedimentary paleoarchives: first, the fidelity of source diagnostic of algal δ13CAA patterns across different oceanographic growth conditions; and second, the ability of δ13CAA patterns to record the degree of subsequent microbial amino acid synthesis after sedimentary burial. Using the marine diatom Thalassiosira weissflogii, we tested under controlled conditions how δ13CAA patterns respond to changing environmental conditions, including light, salinity, temperature, and pH. Our findings show that while differing oceanic growth conditions can change macromolecular cellular composition, δ13CAA isotopic patterns remain largely invariant. These results underscore that δ13CAA patterns should accurately record biosynthetic sources across widely disparate oceanographic conditions. We also explored how δ13CAA patterns change as a function of age, total nitrogen and organic carbon content after burial, in a marine sediment core from a coastal upwelling area off Peru. Based on the four most informative amino acids for distinguishing between diatom and bacterial sources (i.e. isoleucine, lysine, leucine and tyrosine), bacterial derived amino acids ranged from 10-15% in the sediment layers from the last 5000 years to 35% during the last glacial period. The larger bacterial fractions in older sediments indicate that bacterial activity and amino acid resynthesis progressed, approximately as a function of sediment age, to

Stable carbon isotope ratios of lipid biomarkers and their applications in the marine environment

International Nuclear Information System (INIS)

Tolosa, I.; Mora, S. de

2001-01-01

Studies on the distribution of lipid biomarkers in the environment help elucidate biogeochemical processes, but recent findings have significantly reduced the specificity of some biomarkers. The analytical development of Gas Chromatography-Combustion-IRMS (GC-C-IRMS) allows the determination of the δ 13 C of specific biomarkers, thereby improving the veracity of source apportionment. In this report, we present a brief description of the analytical approach for sample preparation and carbon isotope measurements of individual biomarkers. Selected examples of the applications in the use of GC-C-IRMS for biomarker source elucidation in the marine environment and potential applications to paleoclimatological studies are reviewed. (author)

Adaptation of benthic invertebrates to food sources along marine-terrestrial boundaries as indicated by carbon and nitrogen stable isotopes

Science.gov (United States)

Lange, G.; Haynert, K.; Dinter, T.; Scheu, S.; Kröncke, I.

2018-01-01

Frequent environmental changes and abiotic gradients of the Wadden Sea require appropriate adaptations of the local organisms and make it suitable for investigations on functional structure of macrozoobenthic communities from marine to terrestrial boundaries. To investigate community patterns and food use of the macrozoobenthos, a transect of 11 stations was sampled for species number, abundance and stable isotope values (δ13C and δ15N) of macrozoobenthos and for stable isotope values of potential food resources. The transect was located in the back-barrier system of the island of Spiekeroog (southern North Sea, Germany). Our results show that surface and subsurface deposit feeders, such as Peringia ulvae and different oligochaete species, dominated the community, which was poor in species, while species present at the transect stations reached high abundance. The only exception was the upper salt marsh with low abundances but higher species richness because of the presence of specialized semi-terrestrial and terrestrial taxa. The macrozoobenthos relied predominantly on marine resources irrespective of the locality in the intertidal zone, although δ13C values of the consumers decreased from - 14.1 ± 1.6‰ (tidal flats) to - 21.5 ± 2.4‰ (salt marsh). However, the ubiquitous polychaete Hediste diversicolor showed a δ15N enrichment of 2.8‰ (an increase of about one trophic level) from bare sediments to the first vegetated transect station, presumably due to switching from suspension or deposit feeding to predation on smaller invertebrates. Hence, we conclude that changes in feeding mode represent an important mechanism of adaptation to different Wadden Sea habitats.

The provenance, formation, and implications of reduced carbon phases in Martian meteorites

Science.gov (United States)

Steele, Andrew; McCubbin, Francis M.; Fries, Marc D.

2016-11-01

This review is intended to summarize the current observations of reduced carbon in Martian meteorites, differentiating between terrestrial contamination and carbon that is indigenous to Mars. Indeed, the identification of Martian organic matter is among the highest priority targets for robotic spacecraft missions in the next decade, including the Mars Science Laboratory and Mars 2020. Organic carbon compounds are essential building blocks of terrestrial life, so the occurrence and origin (biotic or abiotic) of organic compounds on Mars is of great significance; however, not all forms of reduced carbon are conducive to biological systems. This paper discusses the significance of reduced organic carbon (including methane) in Martian geological and astrobiological systems. Specifically, it summarizes current thinking on the nature, sources, and sinks of Martian organic carbon, a key component to Martian habitability. Based on this compilation, reduced organic carbon on Mars, including detections of methane in the Martian atmosphere, is best described through a combination of abiotic organic synthesis on Mars and infall of extraterrestrial carbonaceous material. Although conclusive signs of Martian life have yet to be revealed, we have developed a strategy for life detection on Mars that can be utilized in future life-detection studies.

The Smithsonian-led Marine Global Earth Observatory (MarineGEO): Proposed Model for a Collaborative Network Linking Marine Biodiversity to Ecosystem Processes

Science.gov (United States)

Duffy, J. E.

2016-02-01

Biodiversity - the variety of functional types of organisms - is the engine of marine ecosystem processes, including productivity, nutrient cycling, and carbon sequestration. Biodiversity remains a black box in much of ocean science, despite wide recognition that effectively managing human interactions with marine ecosystems requires understanding both structure and functional consequences of biodiversity. Moreover, the inherent complexity of biological systems puts a premium on data-rich, comparative approaches, which are best met via collaborative networks. The Smithsonian Institution's MarineGEO program links a growing network of partners conducting parallel, comparative research to understand change in marine biodiversity and ecosystems, natural and anthropogenic drivers of that change, and the ecological processes mediating it. The focus is on nearshore, seabed-associated systems where biodiversity and human population are concentrated and interact most, yet which fall through the cracks of existing ocean observing programs. MarineGEO offers a standardized toolbox of research modules that efficiently capture key elements of biological diversity and its importance in ecological processes across a range of habitats. The toolbox integrates high-tech (DNA-based, imaging) and low-tech protocols (diver surveys, rapid assays of consumer activity) adaptable to differing institutional capacity and resources. The model for long-term sustainability involves leveraging in-kind support among partners, adoption of best practices wherever possible, engagement of students and citizen scientists, and benefits of training, networking, and global relevance as incentives for participation. Here I highlight several MarineGEO comparative research projects demonstrating the value of standardized, scalable assays and parallel experiments for measuring fish and invertebrate diversity, recruitment, benthic herbivory and generalist predation, decomposition, and carbon sequestration. Key

Correlating carbon and oxygen isotope events in early to middle Miocene shallow marine carbonates in the Mediterranean region using orbitally tuned chemostratigraphy and lithostratigraphy

Science.gov (United States)

Auer, Gerald; Piller, Werner E.; Reuter, Markus; Harzhauser, Mathias

2015-04-01

During the Miocene prominent oxygen isotope events (Mi-events) reflect major changes in glaciation, while carbonate isotope maxima (CM-events) reflect changes in organic carbon burial, particularly during the Monterey carbon isotope excursion. However, despite their importance to the global climate history they have never been recorded in shallow marine carbonate successions. The Decontra section on the Maiella Platform (central Apennines, Italy), however, allows to resolve them for the first time in such a setting during the early to middle Miocene. The present study improves the stratigraphic resolution of parts of the Decontra section via orbital tuning of high-resolution gamma ray (GR) and magnetic susceptibility data to the 405 kyr eccentricity metronome. The tuning allows, within the established biostratigraphic, sequence stratigraphic, and isotope stratigraphic frameworks, a precise correlation of the Decontra section with pelagic records of the Mediterranean region, as well as the global paleoclimatic record and the global sea level curve. Spectral series analyses of GR data further indicate that the 405 kyr orbital cycle is particularly well preserved during the Monterey Event. Since GR is a direct proxy for authigenic uranium precipitation during increased burial of organic carbon in the Decontra section, it follows the same long-term orbital pacing as observed in the carbon isotope records. The 405 kyr GR beat is thus correlated with the carbon isotope maxima observed during the Monterey Event. Finally, the Mi-events can now be recognized in the δ18O record and coincide with plankton-rich, siliceous, or phosphatic horizons in the lithology of the section.

Abiotic stresses affect Trichoderma harzianum T39-induced resistance to downy mildew in grapevine.

Science.gov (United States)

Roatti, Benedetta; Perazzolli, Michele; Gessler, Cesare; Pertot, Ilaria

2013-12-01

Enhancement of plant defense through the application of resistance inducers seems a promising alternative to chemical fungicides for controlling crop diseases but the efficacy can be affected by abiotic factors in the field. Plants respond to abiotic stresses with hormonal signals that may interfere with the mechanisms of induced systemic resistance (ISR) to pathogens. In this study, we exposed grapevines to heat, drought, or both to investigate the effects of abiotic stresses on grapevine resistance induced by Trichoderma harzianum T39 (T39) to downy mildew. Whereas the efficacy of T39-induced resistance was not affected by exposure to heat or drought, it was significantly reduced by combined abiotic stresses. Decrease of leaf water potential and upregulation of heat-stress markers confirmed that plants reacted to abiotic stresses. Basal expression of defense-related genes and their upregulation during T39-induced resistance were attenuated by abiotic stresses, in agreement with the reduced efficacy of T39. The evidence reported here suggests that exposure of crops to abiotic stress should be carefully considered to optimize the use of resistance inducers, especially in view of future global climate changes. Expression analysis of ISR marker genes could be helpful to identify when plants are responding to abiotic stresses, in order to optimize treatments with resistance inducers in field.

Improving abiotic stress tolerance of quinoa

DEFF Research Database (Denmark)

Yang, Aizheng

Global food security faces the challenges of rapid population growth and shortage of water resources. Drought, heat waves and soil salinity are becoming more frequent and extreme due to climatic changes in many regions of the world, and resulting in yield reduction of many crops. It is hypothesized...... that quinoa has the potential to grow under a range of abiotic stresses, tolerating levels regarded as stresses in other crop species. Therefore cultivation of quinoa (Chenopodium quinoa Willd.) could be an alternative option in such regions. Even though quinoa is more tolerant to abiotic stress than most...... other crops, its productivity declines under severe drought, high salt conditions and harsh climate conditions. Different management approaches including water-saving irrigation methods (such as deficit irrigation, DI and alternate root-zone drying irrigation, ARD), inoculating crop seeds with plant...

Conservation physiology of marine fishes: state of the art and prospects for policy

DEFF Research Database (Denmark)

McKenzie, David J.; Axelsson, Michael; Chabot, Denis

2016-01-01

The state of the art of research on the environmental physiology of marine fishes is reviewed from the perspective of how it can contribute to conservation of biodiversity and fishery resources. A major constraint to application of physiological knowledge for conservation of marine fishes...... broad applications for conservation physiology research if it provides a universal mechanism to link physiological function with ecological performance and population dynamics of fishes, through effects of abiotic conditions on aerobic metabolic scope. The available data indicate, however......, that the paradigm is not universal, so further research is required on a wide diversity of species. Fish physiologists should interact closely with researchers developing ecological models, in order to investigate how integrating physiological information improves confidence in projecting effects of global change...

Review: geological and experimental evidence for secular variation in seawater Mg/Ca (calcite-aragonite seas and its effects on marine biological calcification

Directory of Open Access Journals (Sweden)

J. B. Ries

2010-09-01

Full Text Available Synchronized transitions in the polymorph mineralogy of the major reef-building and sediment-producing calcareous marine organisms and abiotic CaCO₃ precipitates (ooids, marine cements throughout Phanerozoic time are believed to have been caused by tectonically induced variations in the Mg/Ca ratio of seawater (molar Mg/Ca>2="aragonite seas", <2="calcite seas". Here, I assess the geological evidence in support of secular variation in seawater Mg/Ca and its effects on marine calcifiers, and review a series of recent experiments that investigate the effects of seawater Mg/Ca (1.0–5.2 on extant representatives of calcifying taxa that have experienced variations in this ionic ratio of seawater throughout the geologic past.

Secular variation in seawater Mg/Ca is supported by synchronized secular variations in (1 the ionic composition of fluid inclusions in primary marine halite, (2 the mineralogies of late stage marine evaporites, abiogenic carbonates, and reef- and sediment-forming marine calcifiers, (3 the Mg/Ca ratios of fossil echinoderms, molluscs, rugose corals, and abiogenic carbonates, (4 global rates of tectonism that drive the exchange of Mg²⁺ and Ca²⁺ along zones of ocean crust production, and (5 additional proxies of seawater Mg/Ca including Sr/Mg ratios of abiogenic carbonates, Sr/Ca ratios of biogenic carbonates, and Br concentrations in marine halite.

Laboratory experiments have revealed that aragonite-secreting bryopsidalean algae and scleractinian corals and calcite-secreting coccolithophores exhibit higher rates of calcification and growth in experimental seawaters formulated with seawater Mg/Ca ratios that favor their skeletal mineral. These results support the assertion that seawater Mg/Ca played an important role in determining which hypercalcifying marine organisms were the major reef-builders and sediment-producers throughout Earth history. The observation that primary

Impact of volcanic eruptions on the marine carbon cycle

Science.gov (United States)

Segschneider, Joachim; Ulrike, Niemeier; Martin, Wiesner; Claudia, Timmreck

2010-05-01

The impact of volcanic eruptions on the marine carbon cycle is investigated for the example of the Pinatubo eruption with model simulations of the distribution of the ash cloud and deposition on the ocean surface and the impact of the nutrient addition from ash leachates on the oceanic biological production and hence biological carbon pump. Natural variations of aerosols, especially due to large-magnitude volcanic eruptions, are recognized as a significant climate forcing, altering the Earth's radiation balance and thus tending to cause global temperature changes. While the impact of such events on climate and the terrestrial biosphere is relatively well documented, scientific knowledge of their effects on marine ecosystems and consequent feedbacks to the atmosphere is still very limited. In the deep sea, subaerial eruptive events of global significance are commonly recorded as widespread ash layers, which were often found to be associated with increased abundances of planktic organisms. This has led to the hypothesis that the influx of volcanic ash may provide an external nutrient source for primary production (in particular through iron fertilization) in ocean surface waters. Recent laboratory experiments have demonstrated that pristine volcanic ash indeed releases significant amounts of macronutrients and bioactive trace metals (including phosphate, iron and silica) adsorbed to the surface of the ash particles. The release of these components most likely has its largest impact in ocean regions where their availability is crucial for the growth of oceanic biomass, which are the high-nutrient but low-productivity (low-iron) areas in the Pacific and the Southern Ocean. These in turn are neighbored by most of those subaerially active volcanoes that are capable of ejecting huge amounts of aerosols into the high-velocity stratospheric wind fields. The dispersal and fallout of ash thus has a high potential to induce globally significant, transient net CO2 removal from

Current perspectives in proteomic analysis of abiotic stress in Grapevines

Directory of Open Access Journals (Sweden)

Iniga Seraphina George

2014-12-01

Full Text Available Grapes are an important crop plant which forms the basis of a globally important industry. Grape and wine production is particularly vulnerable to environmental and climatic fluctuations, which makes it essential for us to develop a greater understanding of the molecular level responses of grape plants to various abiotic stresses. The completion of the initial grape genome sequence in 2007 has led to a significant increase in research on grapes using proteomics approaches. In this article, we discuss some of the current research on abiotic stress in grapevines, in the context of abiotic stress research in other plant species. We also highlight some of the current limitations in grapevine proteomics and identify areas with promising scope for potential future research.

Biomineralization processes of calcite induced by bacteria isolated from marine sediments.

Science.gov (United States)

Wei, Shiping; Cui, Hongpeng; Jiang, Zhenglong; Liu, Hao; He, Hao; Fang, Nianqiao

2015-06-01

Biomineralization is a known natural phenomenon associated with a wide range of bacterial species. Bacterial-induced calcium carbonate precipitation by marine isolates was investigated in this study. Three genera of ureolytic bacteria, Sporosarcina sp., Bacillus sp. and Brevundimonas sp. were observed to precipitate calcium carbonate minerals. Of these species, Sporosarcina sp. dominated the cultured isolates. B. lentus CP28 generated higher urease activity and facilitated more efficient precipitation of calcium carbonate at 3.24 ± 0.25 × 10(-4) mg/cell. X-ray diffraction indicated that the dominant calcium carbonate phase was calcite. Scanning electron microscopy showed that morphologies of the minerals were dominated by cubic, rhombic and polygonal plate-like crystals. The dynamic process of microbial calcium carbonate precipitation revealed that B. lentus CP28 precipitated calcite crystals through the enzymatic hydrolysis of urea, and that when ammonium ion concentrations reached 746 mM and the pH reached 9.6, that favored calcite precipitation at a higher level of 96 mg/L. The results of this research provide evidence that a variety of marine bacteria can induce calcium carbonate precipitation, and may influence the marine carbonate cycle in natural environments.

Silicon Isotopes of Marine Pore Water: Tracking the Destiny of Marine Biogenic Opal

Science.gov (United States)

Cassarino, L.; Hendry, K. R.

2017-12-01

Silicon isotopes (δ30Si) are a powerful tool for the studying of the past and present silicon cycles, which is closely linked to the carbon cycle. Siliceous phytoplankton, such as diatoms, as one of the major conveyors of carbon to marine sediments. δ30Si from fossil diatoms has been shown to represent past silicic acid (DSi) utilization in the photic zone, since the lighter isotope is preferentially incorporated in their skeleton, the frustule. This assumes that species in the sediments depict past blooms and that frustules are preserved in their initial state during burial. Here we present new silicon isotopes data of sea water and pore water of deep marine sediments from two contrasted environments, the Equatorial Atlantic and West Antarctic Peninsula. δ30Si and DSi concentration, of both sea water and pore water, are negatively correlated. Marine biogenic opal dissolution can be tracked using δ30Si signature of pore water as lighter signals and high DSi concentrations are associated with the biogenic silica. Our data enhances post depositional and diagenesis processes during burial with a clear highlight on the sediment water interface exchanges.

Spatial distribution of radium in coastal marine waters of Tamil Nadu

International Nuclear Information System (INIS)

Hemalatha, P.; Jha, S.K.; Rajaram, S.; Puranik, V.D.

2010-01-01

This paper presents the radium activity levels in the coastal area covering the entire south eastern coast of Tamil Nadu from Chennai to Kanyakumari. Radium-226 (T 1/2 =1620 y), a α-emitter in the decay chain of elements, of the primordial uranium, is a ubiquitous component of the natural radiation in marine environment. It has a high degree of radiotoxicity, and is found in most abiotic and biotic materials, leading to direct exposure to biota and indirect human radiation exposure. Uptake of 226 Ra in biological systems depends upon the availability of the nuclide. In the light of the possible radio ecological significance in the environment, the present study has been undertaken to investigate the distribution of 226 Ra in the marine components of the Tamil Nadu coast for which no such data are available

Biological and Climate Controls on North Atlantic Marine Carbon Dynamics Over the Last Millennium: Insights From an Absolutely Dated Shell-Based Record From the North Icelandic Shelf

Science.gov (United States)

Reynolds, D. J.; Hall, I. R.; Scourse, J. D.; Richardson, C. A.; Wanamaker, A. D.; Butler, P. G.

2017-12-01

Given the rapid increase in atmospheric carbon dioxide concentrations (pCO2) over the industrial era, there is a pressing need to construct long-term records of natural carbon cycling prior to this perturbation and to develop a more robust understanding of the role the oceans play in the sequestration of atmospheric carbon. Here we reconstruct the past biological and climate controls on the carbon isotopic (δ13Cshell) composition of the North Icelandic shelf waters over the last millennium, derived from the shells of the long-lived marine bivalve mollusk Arctica islandica. Variability in the annually resolved δ13Cshell record is dominated by multidecadal variability with a negative trend (-0.003 ± 0.002‰ yr-1) over the industrial era (1800-2000 Common Era). This trend is consistent with the marine Suess effect brought about by the sequestration of isotopically light carbon (δ13C of CO2) derived from the burning of fossil fuels. Comparison of the δ13Cshell record with Contemporaneous proxy archives, over the last millennium, and instrumental data over the twentieth century, highlights that both biological (primary production) and physical environmental factors, such as relative shifts in the proportion of Subpolar Mode Waters and Arctic Intermediate Waters entrained onto the North Icelandic shelf, atmospheric circulation patterns associated with the winter North Atlantic Oscillation, and sea surface temperature and salinity of the subpolar gyre, are the likely mechanisms that contribute to natural variations in seawater δ13C variability on the North Icelandic shelf. Contrasting δ13C fractionation processes associated with these biological and physical mechanisms likely cause the attenuated marine Suess effect signal at this locality.

Can plant-natural enemy communication withstand disruption by biotic and abiotic factors?

Science.gov (United States)

Clavijo McCormick, Andrea

2016-12-01

The attraction of natural enemies towards herbivore-induced plant volatiles is a well-documented phenomenon. However, the majority of published studies are carried under optimal water and nutrient regimes and with just one herbivore. But what happens when additional levels of ecological complexity are added? Does the presence of a second herbivore, microorganisms, and abiotic stress interfere with plant-natural enemy communication? or is communication stable enough to withstand disruption by additional biotic and abiotic factors?Investigating the effects of these additional levels of ecological complexity is key to understanding the stability of tritrophic interactions in natural ecosystems and may aid to forecast the impact of environmental disturbances on these, especially in climate change scenarios, which are often associated with modifications in plant and arthropod species distribution and increased levels of abiotic stress.This review explores the literature on natural enemy attraction to herbivore-induced volatiles when, besides herbivory, plants are challenged by additional biotic and abiotic factors.The aim of this review was to establish the impact of different biotic and abiotic factors on plant-natural enemy communication and to highlight critical aspects to guide future research efforts.

Evaluation of carbon-14 (C{sup 14}) levels of terrestrial and marine food products of the environment of the site of Cogema La Hague; Evaluation des niveaux de carbone-14 ({sup 14}C) des denrees alimentaires terrestres et marines de l'environnement du site de COGEMA - La Hague

Energy Technology Data Exchange (ETDEWEB)

NONE

2006-04-15

This evaluation has for object to inform about the levels in carbon 14 in the environment of the factories of La Hague. Two sectors were differentiated on one hand the terrestrial environment, and on the other hand the marine environment. The investigations concerned first and foremost food products stemming as the vegetable culture (vegetables) or individual breeding (milk, eggs) but also foodstuffs stemming from the local agriculture (cereal). In touch with the second sector, the marine environment, the sampling concerned the accessible products of the sea by all and those locally marketed (fishes, molluscs, shellfishes). The different results are presented in tables. (N.C.)

Palaeogeographic evolution of the marine Middle Triassic marine Germanic Basin changements - With emphasis on the carbonate tidal flat and shallow marine habitats of reptiles in Central Pangaea

Science.gov (United States)

Diedrich, Cajus G.

2009-01-01

More than seventy-five vertebrate track-sites have been found in Central Europe in 243-246.5 m.y. old Triassic coastal intertidal to sabkha carbonates. In the western part of the very flat Triassic intracontinental Germanic Basin, the carbonate strata contain at least 22 laterally extensive track horizons (called megatracksites). In contrast, in the eastern part of the basin only six megatracksites extended to near the centre of the Basin during marine low stands. Marine ingression and the development of extensive coastal marine environments began during the Aegean (Anisian) stage. This incursion began in the region of the eastern Carpathian and Silesian gates and spread westward due to the development of a tectonically controlled intracratonic basin. The tectonic origin of this basin made it susceptible to tsunamis and submarine earthquakes, which constituted very dangerous hazards for coastal terrestrial and even marine reptiles. The shallow sea that spread across the Germanic Basin produced extensive tidal flats that at times formed extensive inter-peninsular bridges between the Rhenish and Bohemian Massifs. The presence of these inter-peninsular bridges explains the observed distribution and movement of reptiles along coastal Europe and the northern Tethys Seaway during the Middle Triassic epoch. Two small reptiles, probably Macrocnemus and Hescherleria, left millions of tracks and trackways known as Rhynchosauroides and Procolophonichnium in the Middle Triassic coastal intertidal zone. The great abundance of their tracks indicates that their trackmakers Macrocnemus and Hescherleria were permanent inhabitants of this environment. In sharp contrast, tracks of other large terrestrial reptiles are quite rare along the coastal margins of the Germanic Basin, for example the recently discovered archaeosaur tracks and trackways referable to Isochirotherium, which most probably were made by the carnivore Ticinosuchus. Smaller medium-sized predatory thecodont reptiles

Biotic and abiotic variables show little redundancy in explaining tree species distributions

DEFF Research Database (Denmark)

Meier, Elaine S.; Kienast, Felix; Pearman, Peter B.

2010-01-01

Abiotic factors such as climate and soil determine the species fundamental niche, which is further constrained by biotic interactions such as interspecific competition. To parameterize this realized niche, species distribution models (SDMs) most often relate species occurrence data to abiotic var...

Non-marine carbonate facies, facies models and palaeogeographies of the Purbeck Formation (Late Jurassic to Early Cretaceous) of Dorset (Southern England).

Science.gov (United States)

Gallois, Arnaud; Bosence, Dan; Burgess, Peter

2015-04-01

Non-marine carbonates are relatively poorly understood compared with their more abundant marine counterparts. Sedimentary facies and basin architecture are controlled by a range of environmental parameters such as climate, hydrology and tectonic setting but facies models are few and limited in their predictive value. Following the discovery of extensive Early Cretaceous, non-marine carbonate hydrocarbon reservoirs in the South Atlantic, the interest of understanding such complex deposits has increased during recent years. This study is developing a new depositional model for non-marine carbonates in a semi-arid climate setting in an extensional basin; the Purbeck Formation (Upper Jurassic - Lower Cretaceous) in Dorset (Southern England). Outcrop study coupled with subsurface data analysis and petrographic study (sedimentology and early diagenesis) aims to constrain and improve published models of depositional settings. Facies models for brackish water and hypersaline water conditions of these lacustrine to palustrine carbonates deposited in the syn-rift phase of the Wessex Basin will be presented. Particular attention focusses on the factors that control the accumulation of in-situ microbialite mounds that occur within bedded inter-mound packstones-grainstones in the lower Purbeck. The microbialite mounds are located in three units (locally known as the Skull Cap, the Hard Cap and the Soft Cap) separated by three fossil soils (locally known as the Basal, the Lower and the Great Dirt Beds) respectively within three shallowing upward lacustrine sequences. These complex microbialite mounds (up to 4m high), are composed of tabular small-scale mounds (flat and long, up to 50cm high) divided into four subfacies. Many of these small-scale mounds developed around trees and branches which are preserved as moulds (or silicified wood) which are surrounded by a burrowed mudstone-wackestone collar. Subsequently a thrombolite framework developed on the upper part only within

Effect of abiotic stress under light and dark conditions on carotenoid ...

African Journals Online (AJOL)

The aim of this study was to observe the effect of abiotic stress under light and dark conditions on pumpkin calluses carotenoid. Plant elicitors used to create abiotic stress in this study were Polyethylene Glycol 4000 for drought stress, Jasmonic Acid and Salicylic Acid for hormones stress and Murashige and Skoog Salt for ...

Effects of soil abiotic factors on the plant morphology in an intertidal salt marsh, Yellow River Delta, China

Science.gov (United States)

Li, Shanze; Cui, Baoshan; Bai, Junhong; Xie, Tian; Yan, Jiaguo; Wang, Qing; Zhang, Shuyan

2018-02-01

Plant morphology plays important role in studying biogeography in many ecosystems. Suadea salsa, as a native plant community of northern China and an important habitat for diversity of waterbirds and macrobenthos, has often been overlooked. Nowadays, S. salsa community is facing great loss due to coastal reclamation activities and natural disturbances. To maintain and restore S. salsa community, it's important to address the plant morphology across marsh zones, as well as its relationships with local soil abiotic conditions. In our studied intertidal salt marsh, we found that less flood disturbance frequency, softer soil conditions, rich soil organic matter, total carbon and total nitrogen, lower water depth and water content, less species competition will benefit S. salsa plant in the morphology of high coverage, above-ground biomass, shoot height and leaf length. Lower soil porewater salinity will benefit the below-ground biomass of S. salsa. Thus, we recommend managers help alleviate soil abiotic stresses in the intertidal salt marshes, making the soil conditions more suitable for S. salsa growth and succession.

Abiotic systems for the catalytic treatment of solvent-contaminated water

Energy Technology Data Exchange (ETDEWEB)

Betterton, E.A.; Arnold, R.G.; Liu, Zhijie; Hollan, N. [Univ. of Arizona, Tucson, AZ (United States)] [and others

1996-12-31

Three abiotic systems are described that catalyze the reductive dehalogenation of heavily halogenated environmental pollutants, including carbon tetrachloride, trichloroethene, and perchloroethene. These systems include (a) an electrolytic reactor in which the potential on the working electrode (cathode) is fixed by using a potentiostat, (b) a light-driven system consisting of a semiconductor and (covalently attached) macrocycle that can accept light transmitted via an optical fiber, and a light-driven, two-solvent (isopropanol/acetone) system that promotes dehalogenation reactions via an unknown mechanism. Each is capable of accelerating reductive dehalogenation reactions to very high rates under laboratory conditions. Typically, millimolar concentrations of aqueous-phase targets can be dehalogenated in minutes to hours. The description of each system includes the elements of reaction mechanism (to the extent known), typical kinetic data, and a discussion of the feasibility of applying this technology for the in situ destruction of hazardous compounds. 14 refs., 11 figs., 2 tabs.

Latest Permian carbonate carbon isotope variability traces heterogeneous organic carbon accumulation and authigenic carbonate formation

Science.gov (United States)

Schobben, Martin; van de Velde, Sebastiaan; Gliwa, Jana; Leda, Lucyna; Korn, Dieter; Struck, Ulrich; Vinzenz Ullmann, Clemens; Hairapetian, Vachik; Ghaderi, Abbas; Korte, Christoph; Newton, Robert J.; Poulton, Simon W.; Wignall, Paul B.

2017-11-01

Bulk-carbonate carbon isotope ratios are a widely applied proxy for investigating the ancient biogeochemical carbon cycle. Temporal carbon isotope trends serve as a prime stratigraphic tool, with the inherent assumption that bulk micritic carbonate rock is a faithful geochemical recorder of the isotopic composition of seawater dissolved inorganic carbon. However, bulk-carbonate rock is also prone to incorporate diagenetic signals. The aim of the present study is to disentangle primary trends from diagenetic signals in carbon isotope records which traverse the Permian-Triassic boundary in the marine carbonate-bearing sequences of Iran and South China. By pooling newly produced and published carbon isotope data, we confirm that a global first-order trend towards depleted values exists. However, a large amount of scatter is superimposed on this geochemical record. In addition, we observe a temporal trend in the amplitude of this residual δ13C variability, which is reproducible for the two studied regions. We suggest that (sub-)sea-floor microbial communities and their control on calcite nucleation and ambient porewater dissolved inorganic carbon δ13C pose a viable mechanism to induce bulk-rock δ13C variability. Numerical model calculations highlight that early diagenetic carbonate rock stabilization and linked carbon isotope alteration can be controlled by organic matter supply and subsequent microbial remineralization. A major biotic decline among Late Permian bottom-dwelling organisms facilitated a spatial increase in heterogeneous organic carbon accumulation. Combined with low marine sulfate, this resulted in varying degrees of carbon isotope overprinting. A simulated time series suggests that a 50 % increase in the spatial scatter of organic carbon relative to the average, in addition to an imposed increase in the likelihood of sampling cements formed by microbial calcite nucleation to 1 out of 10 samples, is sufficient to induce the observed signal of carbon

Latest Permian carbonate carbon isotope variability traces heterogeneous organic carbon accumulation and authigenic carbonate formation

Directory of Open Access Journals (Sweden)

M. Schobben

2017-11-01

Full Text Available Bulk-carbonate carbon isotope ratios are a widely applied proxy for investigating the ancient biogeochemical carbon cycle. Temporal carbon isotope trends serve as a prime stratigraphic tool, with the inherent assumption that bulk micritic carbonate rock is a faithful geochemical recorder of the isotopic composition of seawater dissolved inorganic carbon. However, bulk-carbonate rock is also prone to incorporate diagenetic signals. The aim of the present study is to disentangle primary trends from diagenetic signals in carbon isotope records which traverse the Permian–Triassic boundary in the marine carbonate-bearing sequences of Iran and South China. By pooling newly produced and published carbon isotope data, we confirm that a global first-order trend towards depleted values exists. However, a large amount of scatter is superimposed on this geochemical record. In addition, we observe a temporal trend in the amplitude of this residual δ13C variability, which is reproducible for the two studied regions. We suggest that (sub-sea-floor microbial communities and their control on calcite nucleation and ambient porewater dissolved inorganic carbon δ13C pose a viable mechanism to induce bulk-rock δ13C variability. Numerical model calculations highlight that early diagenetic carbonate rock stabilization and linked carbon isotope alteration can be controlled by organic matter supply and subsequent microbial remineralization. A major biotic decline among Late Permian bottom-dwelling organisms facilitated a spatial increase in heterogeneous organic carbon accumulation. Combined with low marine sulfate, this resulted in varying degrees of carbon isotope overprinting. A simulated time series suggests that a 50 % increase in the spatial scatter of organic carbon relative to the average, in addition to an imposed increase in the likelihood of sampling cements formed by microbial calcite nucleation to 1 out of 10 samples, is sufficient to induce the

Study of some modern carbonated marine organisms, using U234/U238 activities and its uranium concentration

International Nuclear Information System (INIS)

Pregnolatto, Y.

1975-01-01

Several types of alive carbonated organisms of marine fluvial or mixed environment origin were analized in its concentrations of Uranium and about its activity ratio U 234 /U 238 . In the same way measurements were made from the water of these three types of environments. The results indicate that the mollusks shells show a very low concentration compared with corals. Its concentration varies from 0.04 to 0.33 ppm. Inside the limit of errors we can say that the several types of carbonated organisms show the same disequilibrium U 234 /U 238 which was found in associated waters. An analysis of a piece of wood from long time immersed in the sea water was made. The result indicates that there was a marked high in concentration of Uranium due to chelatation with organic matter. (C.D.G.) [pt

Tropical rainforest response to marine sky brightening climate engineering

Science.gov (United States)

Muri, Helene; Niemeier, Ulrike; Kristjánsson, Jón Egill

2015-04-01

Tropical forests represent a major atmospheric carbon dioxide sink. Here the gross primary productivity (GPP) response of tropical rainforests to climate engineering via marine sky brightening under a future scenario is investigated in three Earth system models. The model response is diverse, and in two of the three models, the tropical GPP shows a decrease from the marine sky brightening climate engineering. Partial correlation analysis indicates precipitation to be important in one of those models, while precipitation and temperature are limiting factors in the other. One model experiences a reversal of its Amazon dieback under marine sky brightening. There, the strongest partial correlation of GPP is to temperature and incoming solar radiation at the surface. Carbon fertilization provides a higher future tropical rainforest GPP overall, both with and without climate engineering. Salt damage to plants and soils could be an important aspect of marine sky brightening.

Abiotic ozone and oxygen in atmospheres similar to prebiotic Earth

International Nuclear Information System (INIS)

Domagal-Goldman, Shawn D.; Segura, Antígona; Claire, Mark W.; Robinson, Tyler D.; Meadows, Victoria S.

2014-01-01

The search for life on planets outside our solar system will use spectroscopic identification of atmospheric biosignatures. The most robust remotely detectable potential biosignature is considered to be the detection of oxygen (O 2 ) or ozone (O 3 ) simultaneous to methane (CH 4 ) at levels indicating fluxes from the planetary surface in excess of those that could be produced abiotically. Here we use an altitude-dependent photochemical model with the enhanced lower boundary conditions necessary to carefully explore abiotic O 2 and O 3 production on lifeless planets with a wide variety of volcanic gas fluxes and stellar energy distributions. On some of these worlds, we predict limited O 2 and O 3 buildup, caused by fast chemical production of these gases. This results in detectable abiotic O 3 and CH 4 features in the UV-visible, but no detectable abiotic O 2 features. Thus, simultaneous detection of O 3 and CH 4 by a UV-visible mission is not a strong biosignature without proper contextual information. Discrimination between biological and abiotic sources of O 2 and O 3 is possible through analysis of the stellar and atmospheric context—particularly redox state and O atom inventory—of the planet in question. Specifically, understanding the spectral characteristics of the star and obtaining a broad wavelength range for planetary spectra should allow more robust identification of false positives for life. This highlights the importance of wide spectral coverage for future exoplanet characterization missions. Specifically, discrimination between true and false positives may require spectral observations that extend into infrared wavelengths and provide contextual information on the planet's atmospheric chemistry.

Study of the carbon and oxygen isotopic compositions in marine shells of Salvador-Bahia, Brazil

International Nuclear Information System (INIS)

Freitas, J.C.B. de.

1977-01-01

The carbon and oxygen isotopic composition of 68 samples of marine shells from the region of Salvador was determined. These samples are from points on the open coast and in the interior of the Todos os Santos Bay and they are composed in part by recent specimens and in part by old specimens taken from Quaternary sediments. The results for δ 18 O are in the range of -2,83per mille to + 1,21per mille (PDB) and for δ 13 C in the range of -3,10per mille to +2,63per mille (PDB). The reults for the recent shells from the interior of the Todos os Santos Bay show variations in the δ 13 C values associated to the dominance of organic matter in some regions. For the old samoles, gathered in te variations in the δ 13 C values was associated to the existence in points of that region of deposits of fluvio-lagunar sediments, originated during the last marine transgression. It was identified, for a few species with the same age and location, the effect of biological fractionations. Nevertheless, the observed dominant factor on the isotopic differentiation was the environmental fractionation. (Author) [pt

Assessing the potential of amino acid 13C patterns as a carbon source tracer in marine sediments: effects of algal growth conditions and sedimentary diagenesis

Science.gov (United States)

Larsen, T.; Bach, L. T.; Salvatteci, R.; Wang, Y. V.; Andersen, N.; Ventura, M.; McCarthy, M. D.

2015-08-01

Burial of organic carbon in marine sediments has a profound influence in marine biogeochemical cycles and provides a sink for greenhouse gases such as CO2 and CH4. However, tracing organic carbon from primary production sources as well as its transformations in the sediment record remains challenging. Here we examine a novel but growing tool for tracing the biosynthetic origin of amino acid carbon skeletons, based on naturally occurring stable carbon isotope patterns in individual amino acids (δ13CAA). We focus on two important aspects for δ13CAA utility in sedimentary paleoarchives: first, the fidelity of source diagnostic of algal δ13CAA patterns across different oceanographic growth conditions, and second, the ability of δ13CAA patterns to record the degree of subsequent microbial amino acid synthesis after sedimentary burial. Using the marine diatom Thalassiosira weissflogii, we tested under controlled conditions how δ13CAA patterns respond to changing environmental conditions, including light, salinity, temperature, and pH. Our findings show that while differing oceanic growth conditions can change macromolecular cellular composition, δ13CAA isotopic patterns remain largely invariant. These results emphasize that δ13CAA patterns should accurately record biosynthetic sources across widely disparate oceanographic conditions. We also explored how δ13CAA patterns change as a function of age, total nitrogen and organic carbon content after burial, in a marine sediment core from a coastal upwelling area off Peru. Based on the four most informative amino acids for distinguishing between diatom and bacterial sources (i.e., isoleucine, lysine, leucine and tyrosine), bacterially derived amino acids ranged from 10 to 15 % in the sediment layers from the last 5000 years, and up to 35 % during the last glacial period. The greater bacterial contributions in older sediments indicate that bacterial activity and amino acid resynthesis progressed, approximately as a

Coral Reef Functioning Along a Cross‐shelf Environmental Gradient: Abiotic and Biotic Drivers of Coral Reef Growth in the Red Sea

KAUST Repository

Roik, Anna

2016-06-01

Despite high temperature and salinity conditions that challenge reef growth in other oceans, the Red Sea maintains amongst the most biodiverse and productive coral reefs worldwide. It is therefore an important region for the exploration of coral reef functioning, and expected to contribute valuable insights towards the understanding of coral reefs in challenging environments. This dissertation assessed the baseline variability of in situ abiotic conditions (temperature, dissolved oxygen, pH, and total alkalinity, among others) in the central Red Sea and highlights these environmental regimes in a global context. Further, focus was directed on biotic factors (biofilm community dynamics, calcification and bioerosion), which underlie reef growth processes and are crucial for maintaining coral reef functioning and ecosystem services. Using full‐year data from an environmental cross‐shelf gradient, the dynamic interplay of abiotic and biotic factors was investigated. In situ observations demonstrate that central Red Sea coral reefs were highly variable on spatial, seasonal, and diel scales, and exhibited comparably high temperature, high salinity, and low dissolved oxygen levels, which on the one hand reflect future ocean predictions. Under these conditions epilithic bacterial and algal assemblages were mainly driven by variables (i.e., temperature, salinity, dissolved oxygen) which are predicted to change strongly in the progression of global climate change, implying an influential bottom up effect on reef‐building communities. On the other hand, measured alkalinity and other carbonate chemistry value were close to the estimates of preindustrial global ocean surface water and thus in favor of reef growth processes. Despite this beneficial carbonate chemistry, calcification and carbonate budgets in the reefs were not higher than in other coral reef regions. In this regard, seasonal calcification patterns suggest that summer temperatures may be exceeding the optima

Abiotic Formation of Methyl Halides in the Terrestrial Environment

Science.gov (United States)

Keppler, F.

2011-12-01

Methyl chloride and methyl bromide are the most abundant chlorine and bromine containing organic compounds in the atmosphere. Since both compounds have relatively long tropospheric lifetimes they can effectively transport halogen atoms from the Earth's surface, where they are released, to the stratosphere and following photolytic oxidation form reactive halogen gases that lead to the chemical destruction of ozone. Methyl chloride and methyl bromide account for more than 20% of the ozone-depleting halogens delivered to the stratosphere and are predicted to grow in importance as the chlorine contribution to the stratosphere from anthropogenic CFCs decline. Today methyl chloride and methyl bromide originate mainly from natural sources with only a minor fraction considered to be of anthropogenic origin. However, until as recently as 2000 most of the methyl chloride and methyl bromide input to the atmosphere was considered to originate from the oceans, but investigations in recent years have clearly demonstrated that terrestrial sources such as biomass burning, wood-rotting fungi, coastal salt marshes, tropical vegetation and organic matter degradation must dominate the atmospheric budgets of these trace gases. However, many uncertainties still exist regarding strengths of both sources and sinks, as well as the mechanisms of formation of these naturally occurring halogenated gases. A better understanding of the atmospheric budget of both methyl chloride and methyl bromide is therefore required for reliable prediction of future ozone depletion. Biotic and abiotic methylation processes of chloride and bromide ion are considered to be the dominant pathways of formation of these methyl halides in nature. In this presentation I will focus on abiotic formation processes in the terrestrial environment and the potential parameters that control their emissions. Recent advances in our understanding of the abiotic formation pathway of methyl halides will be discussed. This will

Comparison of U and Np uptake on biogenic and abiotic ferrihydrite by XAFS

International Nuclear Information System (INIS)

Krawczyk-Baersch, Evelyn; Schmeide, Katja; Kvashnina, Kristina O.; Rossberg, Andre; Scheinost, Andreas C.

2017-01-01

XAS spectra of U and Np sorption biogenic ferrihydrite samples were compared to abiotic samples. The k 3 -weighted χ-spectrum and its Fourier-transform of the studied biogenic ferrihydrite sample bears close resemblance to the bidentate edge-sharing innersphere sorption 1 E complex, which is the main sorption species on abiotic ferrihydrite. Based on the shell fit analysis, the distances of the coordination shells U-O eq , U-O ax , and U-Fe are similar to those determined for abiotic ferrihydrite samples.

Abscisic Acid and Abiotic Stress Tolerance in Crop Plants

Science.gov (United States)

Sah, Saroj K.; Reddy, Kambham R.; Li, Jiaxu

2016-01-01

Abiotic stress is a primary threat to fulfill the demand of agricultural production to feed the world in coming decades. Plants reduce growth and development process during stress conditions, which ultimately affect the yield. In stress conditions, plants develop various stress mechanism to face the magnitude of stress challenges, although that is not enough to protect them. Therefore, many strategies have been used to produce abiotic stress tolerance crop plants, among them, abscisic acid (ABA) phytohormone engineering could be one of the methods of choice. ABA is an isoprenoid phytohormone, which regulates various physiological processes ranging from stomatal opening to protein storage and provides adaptation to many stresses like drought, salt, and cold stresses. ABA is also called an important messenger that acts as the signaling mediator for regulating the adaptive response of plants to different environmental stress conditions. In this review, we will discuss the role of ABA in response to abiotic stress at the molecular level and ABA signaling. The review also deals with the effect of ABA in respect to gene expression. PMID:27200044

Support media can steer methanogenesis in the presence of phenol through biotic and abiotic effects.

Science.gov (United States)

Poirier, Simon; Déjean, Sébastien; Chapleur, Olivier

2018-09-01

A wide variety of inhibitors can induce anaerobic digester disruption. To avoid performance losses, support media can be used to mitigate inhibitions. However, distinguishing the physico-chemical from the biological mechanisms of such strategies remains delicate. In this framework, the impact of 10  g/L of different types of zeolites and activated carbons (AC) on microbial community dynamics during anaerobic digestion of biowaste in the presence of 1.3 g/L of phenol was evaluated with 16 S rRNA gene sequencing. In the presence of AC, methanogenesis inhibition was rapidly removed due to a decrease of phenol concentration. This abiotic effect related to the physico-chemical properties of AC led to increased final CH4 and CO2 productions by 29-31% compared to digesters incubated without support. Interestingly, although zeolite did not adsorb phenol, final CH4 and CO2 production reached comparable levels as with AC. Nevertheless, compared to digesters incubated without support, methanogenesis lag phase duration was less reduced in the presence of zeolites (5 ± 1 days) than in the presence of activated carbons (12 ± 2 days). Both types of support induced biotic effects. AC and zeolite both allowed the preservation of the major representative archaeal genus of the non-inhibited ecosystem, Methanosarcina. By contrast, they distinctly shaped bacterial populations. OTUs belonging to class W5 became dominant at the expense of OTUs assigned to orders Clostridiales, Bacteroidales and Anaerolinales in the presence of AC. Zeolite enhanced the implantation of OTUs assigned to bacterial phylum Cloacimonetes. This study highlighted that supports can induce biotic and abiotic effects within digesters inhibited with phenol, showing potentialities to enhance anaerobic digestion stability under disrupting conditions. Copyright © 2018 Elsevier Ltd. All rights reserved.

The Role of Silicon under Biotic and Abiotic Stress Conditions

Directory of Open Access Journals (Sweden)

İlkay YAVAŞ

2017-06-01

Full Text Available Biotic and abiotic stress factors can adversely affect the agricultural productivity leading to physiological and biochemical damage to crops. Therefore, the most effective way is to increase the resistance to stresses. Silicon plays a ro le in reducing the effects of abiotic and biotic stresses (drought, salt stress, disease and insect stress etc. on plants. Silicon is accumulated in the cell walls and intercellular spaces and thus it has beneficial effects on disease infestations in especially small grains. The application of silicon may reduce the effects of environmental stresses on plants while making effective use of plant nutrients such as nitrogen and phosphorous. Also, silicon may reduce the toxic effects of heavy metals in soil. I t may protect the foliage and increase light uptake and reduce respiration. Therefore, in this review, we discussed the effects of silicon on abiotic and biotic stresses in especially field crops.

Comparison of U and Np uptake on biogenic and abiotic ferrihydrite by XAFS

Energy Technology Data Exchange (ETDEWEB)

Krawczyk-Baersch, Evelyn [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Biogeochemistry; Schmeide, Katja [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Surface Processes; Kvashnina, Kristina O.; Rossberg, Andre; Scheinost, Andreas C. [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Molecular Structures

2017-06-01

XAS spectra of U and Np sorption biogenic ferrihydrite samples were compared to abiotic samples. The k{sup 3}-weighted χ-spectrum and its Fourier-transform of the studied biogenic ferrihydrite sample bears close resemblance to the bidentate edge-sharing innersphere sorption {sup 1}E complex, which is the main sorption species on abiotic ferrihydrite. Based on the shell fit analysis, the distances of the coordination shells U-O{sub eq}, U-O{sub ax}, and U-Fe are similar to those determined for abiotic ferrihydrite samples.

Abiotic ozone and oxygen in atmospheres similar to prebiotic Earth

Energy Technology Data Exchange (ETDEWEB)

Domagal-Goldman, Shawn D. [Planetary Environments Laboratory, NASA Goddard Space Flight Center, 8800 Greenbelt Road, Greenbelt, MD 20771 (United States); Segura, Antígona; Claire, Mark W.; Robinson, Tyler D.; Meadows, Victoria S., E-mail: shawn.goldman@nasa.gov [NASA Astrobiology Institute—Virtual Planetary Laboratory (United States)

2014-09-10

The search for life on planets outside our solar system will use spectroscopic identification of atmospheric biosignatures. The most robust remotely detectable potential biosignature is considered to be the detection of oxygen (O{sub 2}) or ozone (O{sub 3}) simultaneous to methane (CH{sub 4}) at levels indicating fluxes from the planetary surface in excess of those that could be produced abiotically. Here we use an altitude-dependent photochemical model with the enhanced lower boundary conditions necessary to carefully explore abiotic O{sub 2} and O{sub 3} production on lifeless planets with a wide variety of volcanic gas fluxes and stellar energy distributions. On some of these worlds, we predict limited O{sub 2} and O{sub 3} buildup, caused by fast chemical production of these gases. This results in detectable abiotic O{sub 3} and CH{sub 4} features in the UV-visible, but no detectable abiotic O{sub 2} features. Thus, simultaneous detection of O{sub 3} and CH{sub 4} by a UV-visible mission is not a strong biosignature without proper contextual information. Discrimination between biological and abiotic sources of O{sub 2} and O{sub 3} is possible through analysis of the stellar and atmospheric context—particularly redox state and O atom inventory—of the planet in question. Specifically, understanding the spectral characteristics of the star and obtaining a broad wavelength range for planetary spectra should allow more robust identification of false positives for life. This highlights the importance of wide spectral coverage for future exoplanet characterization missions. Specifically, discrimination between true and false positives may require spectral observations that extend into infrared wavelengths and provide contextual information on the planet's atmospheric chemistry.

Abiotic dechlorination in rock matrices impacted by long-term exposure to TCE.

Science.gov (United States)

Schaefer, Charles E; Towne, Rachael M; Lippincott, David R; Lacombe, Pierre J; Bishop, Michael E; Dong, Hailiang

2015-01-01

Field and laboratory tests were performed to evaluate the abiotic reaction of trichloroethene (TCE) in sedimentary rock matrices. Hydraulically conductive fractures, and the rock directly adjacent to the hydraulically conductive fractures, within a historically contaminated TCE bedrock aquifer were used as the basis for this study. These results were compared to previous work using rock that had not been exposed to TCE (Schaefer et al., 2013) to assess the impact of long-term TCE exposure on the abiotic dechlorination reaction, as the longevity of these reactions after long-term exposure to TCE was hitherto unknown. Results showed that potential abiotic TCE degradation products, including ethane, ethene, and acetylene, were present in the conductive fractures. Using minimally disturbed slices of rock core at and near the fracture faces, laboratory testing on the rocks confirmed that abiotic dechlorination reactions between the rock matrix and TCE were occurring. Abiotic daughter products measured in the laboratory under controlled conditions were consistent with those measured in the conductive fractures, except that propane also was observed as a daughter product. TCE degradation measured in the laboratory was well described by a first order rate constant through the 118-d study. Observed bulk first-order TCE degradation rate constants within the rock matrix were 1.3×10(-8) s(-1). These results clearly show that abiotic dechlorination of TCE is occurring within the rock matrix, despite decades of exposure to TCE. Furthermore, these observed rates of TCE dechlorination are expected to have a substantial impact on TCE migration and uptake/release from rock matrices. Copyright © 2014 Elsevier Ltd. All rights reserved.

Marine renewable energies. Stakes and technical solutions

International Nuclear Information System (INIS)

Lacroix, Olivier; Macadre, Laura-Mae

2012-05-01

Marine renewable energies are able to supply carbon free energy from various ocean resources (tides, waves, currents, winds, salinity and temperature gradients). This sector, currently at an early stage of deployment, has good prospects of development in the coming years. ENEA releases a report on marine renewable energies giving a transversal vision of the associated stakes and prospects of development. Technical and economic characteristics, maturity level and specificities of each marine energy are analyzed. French and European sources of funding, regulatory framework and potential environmental and social impacts are also reported

Nitrogen fertility and abiotic stresses management in cotton crop: a review.

Science.gov (United States)

Khan, Aziz; Tan, Daniel Kean Yuen; Afridi, Muhammad Zahir; Luo, Honghai; Tung, Shahbaz Atta; Ajab, Mir; Fahad, Shah

2017-06-01

This review outlines nitrogen (N) responses in crop production and potential management decisions to ameliorate abiotic stresses for better crop production. N is a primary constituent of the nucleotides and proteins that are essential for life. Production and application of N fertilizers consume huge amounts of energy, and excess is detrimental to the environment. Therefore, increasing plant N use efficiency (NUE) is important for the development of sustainable agriculture. NUE has a key role in crop yield and can be enhanced by controlling loss of fertilizers by application of humic acid and natural polymers (hydrogels), having high water-holding capacity which can improve plant performance under field conditions. Abiotic stresses such as waterlogging, drought, heat, and salinity are the major limitations for successful crop production. Therefore, integrated management approaches such as addition of aminoethoxyvinylglycine (AVG), the film antitranspirant (di-1-p-menthene and pinolene) nutrients, hydrogels, and phytohormones may provide novel approaches to improve plant tolerance against abiotic stress-induced damage. Moreover, for plant breeders and molecular biologists, it is a challenge to develop cotton cultivars that can tolerate plant abiotic stresses while having high potential NUE for the future.

WRKY proteins: signaling and regulation of expression during abiotic stress responses.

Science.gov (United States)

Banerjee, Aditya; Roychoudhury, Aryadeep

2015-01-01

WRKY proteins are emerging players in plant signaling and have been thoroughly reported to play important roles in plants under biotic stress like pathogen attack. However, recent advances in this field do reveal the enormous significance of these proteins in eliciting responses induced by abiotic stresses. WRKY proteins act as major transcription factors, either as positive or negative regulators. Specific WRKY factors which help in the expression of a cluster of stress-responsive genes are being targeted and genetically modified to induce improved abiotic stress tolerance in plants. The knowledge regarding the signaling cascade leading to the activation of the WRKY proteins, their interaction with other proteins of the signaling pathway, and the downstream genes activated by them are altogether vital for justified targeting of the WRKY genes. WRKY proteins have also been considered to generate tolerance against multiple abiotic stresses with possible roles in mediating a cross talk between abiotic and biotic stress responses. In this review, we have reckoned the diverse signaling pattern and biological functions of WRKY proteins throughout the plant kingdom along with the growing prospects in this field of research.

Unraveling the role of fungal symbionts in plant abiotic stress tolerance

Science.gov (United States)

Singh, Lamabam Peter

2011-01-01

Fungal symbionts have been found to be associated with every plant studied in the natural ecosystem, where they colonize and reside entirely or partially in the internal tissues of their host plant. Fungal endophytes can express/form a range of different lifestyle/relationships with different host including symbiotic, mutualistic, commensalistic and parasitic in response to host genotype and environmental factors. In mutualistic association fungal endophyte can enhance growth, increase reproductive success and confer biotic and abiotic stress tolerance to its host plant. Since abiotic stress such as, drought, high soil salinity, heat, cold, oxidative stress and heavy metal toxicity is the common adverse environmental conditions that affect and limit crop productivity worldwide. It may be a promising alternative strategy to exploit fungal endophytes to overcome the limitations to crop production brought by abiotic stress. There is an increasing interest in developing the potential biotechnological applications of fungal endophytes for improving plant stress tolerance and sustainable production of food crops. Here we have described the fungal symbioses, fungal symbionts and their role in abiotic stress tolerance. A putative mechanism of stress tolerance by symbionts has also been covered. PMID:21512319

Compartment specific importance of glutathione during abiotic and biotic stress

Directory of Open Access Journals (Sweden)

Bernd eZechmann

2014-10-01

Full Text Available The tripeptide thiol glutathione (γ-L-glutamyl-L-cysteinyl-glycine is the most important sulfur containing antioxidant in plants and essential for plant defense against abiotic and biotic stress conditions. It is involved in the detoxification of reactive oxygen species, redox signaling, the modulation of defense gene expression and important for the regulation of enzymatic activities. Even though changes in glutathione contents are well documented in plants and its roles in plant defense are well established, still too little is known about its compartment specific importance during abiotic and biotic stress conditions. Due to technical advances in the visualization of glutathione and the redox state of plants through microscopical methods some progress was made in the last few years in studying the importance of subcellular glutathione contents during stress conditions in plants. This review summarizes the data available on compartment specific importance of glutathione in the protection against abiotic and biotic stress conditions such as high light stress, exposure to cadmium, drought, and pathogen attack (Pseudomonas, Botrytis, Tobacco Mosaic Virus. The data will be discussed in connection with the subcellular accumulation of ROS during these conditions and glutathione synthesis which are both highly compartment specific (e.g. glutathione synthesis takes place in chloroplasts and the cytosol. Thus this review will reveal the compartment specific importance of glutathione during abiotic and biotic stress conditions.

Evaluation of carbon-14 (C14) levels of terrestrial and marine food products of the environment of the site of Cogema La Hague

International Nuclear Information System (INIS)

2006-04-01

This evaluation has for object to inform about the levels in carbon 14 in the environment of the factories of La Hague. Two sectors were differentiated on one hand the terrestrial environment, and on the other hand the marine environment. The investigations concerned first and foremost food products stemming as the vegetable culture (vegetables) or individual breeding (milk, eggs) but also foodstuffs stemming from the local agriculture (cereal). In touch with the second sector, the marine environment, the sampling concerned the accessible products of the sea by all and those locally marketed (fishes, molluscs, shellfishes). The different results are presented in tables. (N.C.)

­Genomic data mining of the marine actinobacteria Streptomyces sp. H-KF8 unveils insights into multi-stress related genes and metabolic pathways involved in antimicrobial synthesis

Directory of Open Access Journals (Sweden)

Agustina Undabarrena

2017-02-01

Full Text Available Streptomyces sp. H-KF8 is an actinobacterial strain isolated from marine sediments of a Chilean Patagonian fjord. Morphological characterization together with antibacterial activity was assessed in various culture media, revealing a carbon-source dependent activity mainly against Gram-positive bacteria (S. aureus and L. monocytogenes. Genome mining of this antibacterial-producing bacterium revealed the presence of 26 biosynthetic gene clusters (BGCs for secondary metabolites, where among them, 81% have low similarities with known BGCs. In addition, a genomic search in Streptomyces sp. H-KF8 unveiled the presence of a wide variety of genetic determinants related to heavy metal resistance (49 genes, oxidative stress (69 genes and antibiotic resistance (97 genes. This study revealed that the marine-derived Streptomyces sp. H-KF8 bacterium has the capability to tolerate a diverse set of heavy metals such as copper, cobalt, mercury, chromate and nickel; as well as the highly toxic tellurite, a feature first time described for Streptomyces. In addition, Streptomyces sp. H-KF8 possesses a major resistance towards oxidative stress, in comparison to the soil reference strain Streptomyces violaceoruber A3(2. Moreover, Streptomyces sp. H-KF8 showed resistance to 88% of the antibiotics tested, indicating overall, a strong response to several abiotic stressors. The combination of these biological traits confirms the metabolic versatility of Streptomyces sp. H-KF8, a genetically well-prepared microorganism with the ability to confront the dynamics of the fjord-unique marine environment.

Kinetics of abiotic nitrous oxide production via oxidation of hydroxylamine by particulate metals in seawater

Science.gov (United States)

Cavazos, A. R.; Taillefert, M.; Glass, J. B.

2016-12-01

The oceans are a significant of nitrous oxide (N2O) to the atmosphere. Current models of global oceanic N2­O flux focus on microbial N2O cycling and often ignore abiotic reactions, such as the thermodynamically favorable oxidation of the nitrification intermediate hydroxylamine (NH2OH) by Mn(IV) or Fe(III). At circumneutral pH, NH2OH oxidation is more thermodynamically favorable via Mn(IV) than Fe(III) reduction. We characterized the kinetics of NH2OH oxidation in synthetic ocean water at pH 5.1-8.8 using microsensor electrodes to measure real-time N2O production. N2O production rates and yield were greater when NH2OH was oxidized by Mn(IV) than Fe(III). Accordingly, the reduction of Mn(IV) was first order with respect to NH2OH whereas the reduction of Fe(III) was zero order with respect to NH2OH. Interestingly, the order of the reaction with respect to Mn(IV) appears to be negative whereas the reaction is second order with respect to Fe(III). The inverse order with respect to Mn(IV) may be due to the aggregation of particles in seawater, which decreases their surface area and changes their reactivity. Finally, the reaction is first order with respect to protons with Fe(III) as the oxidant but zero order with Mn(IV). The stronger effect of the pH on the reaction with Fe(III) as the oxidant compared to Mn(IV) reflects the stoichiometry of these two reactions, as each mole of N2O produced by Fe(III) reduction consumes eight protons while each mole of N2O produced with Mn(IV) as the oxidant requires only four protons. Our data show that abiotic NH2OH oxidation by Mn(IV) or Fe(III) particles may represent a significant source of N2O in seawater. These findings suggest that abiotic N2O production in marine waters may be significant in areas of the oceans where particulate metals originating from aerosols, dust, or rivers may react with NH2OH released from ammonia-oxidizing microorganisms.

The inhibition of marine nitrification by ocean disposal of carbon dioxide

International Nuclear Information System (INIS)

Huesmann, M.H.; Skillman, A.D.; Crecelius, E.A.

2002-01-01

In an attempt to reduce the threat of global warming, it has been proposed that the rise of atmospheric carbon dioxide concentrations be reduced by the ocean disposal of CO 2 from the flue gases of fossil fuel-fired power plants. The release of large amounts of CO 2 into mid or deep ocean waters will result in large plumes of acidified seawater with pH values ranging from 6 to 8. In an effort to determine whether these CO 2 -induced pH changes have any effect on marine nitrification processes, surficial (euphotic zone) and deep (aphotic zone) seawater samples were sparged with CO 2 for varying time durations to achieve a specified pH reduction, and the rate of microbial ammonia oxidation was measured spectrophotometrically as a function of pH using an inhibitor technique. For both seawater samples taken from either the euphotic or aphotic zone, the nitrification rates dropped drastically with decreasing pH. Relative to nitrification rates in the original seawater at pH 8, nitrification rates were reduced by ca. 50% at pH 7 and more than 90% at pH 6.5. Nitrification was essentially completely inhibited at pH 6. These findings suggest that the disposal of CO 2 into mid or deep oceans will most likely result in a drastic reduction of ammonia oxidation rates within the pH plume and the concomitant accumulation of ammonia instead of nitrate. It is unlikely that ammonia will reach the high concentration levels at which marine aquatic organisms are known to be negatively affected. However, if the ammonia-rich seawater from inside the pH plume is upwelled into the euphotic zone, it is likely that changes in phytoplankton abundance and community structure will occur. Finally, the large-scale inhibition of nitrification and the subsequent reduction of nitrite and nitrate concentrations could also result in a decrease of denitrification rates which, in turn, could lead to the buildup of nitrogen and unpredictable eutrophication phenomena. Clearly, more research on the

Removal of toxic chromium from aqueous solution, wastewater and saline water by marine red alga Pterocladia capillacea and its activated carbon

Directory of Open Access Journals (Sweden)

Ahmed El Nemr

2015-01-01

Full Text Available Pterocladia capillacea, a red marine macroalgae, was tested for its ability to remove toxic hexavalent chromium from aqueous solution. A new activated carbon obtained from P. capillacea via acid dehydration was also investigated as an adsorbent for toxic chromium. The experiments were conducted to study the effect of important parameters such as pH, chromium concentration and adsorbent weight. Batch equilibrium tests at different pH conditions showed that at pH 1.0, a maximum chromium uptake was observed for both inactivated dried red alga P. capillacea and its activated carbon. The maximum sorption capacities for dried red alga and its activated carbon were about 12 and 66 mgg−1, respectively, as calculated by Langmuir model. The ability of inactivated red alga P. capillacea and developed activated carbon to remove chromium from synthetic sea water, natural sea water and wastewater was investigated as well. Different isotherm models were used to analyze the experimental data and the models parameters were evaluated. This study showed that the activated carbon developed from red alga P. capillacea is a promising activated carbon for removal of toxic chromium.

Pathways for degradation of plastic polymers floating in the marine environment.

Science.gov (United States)

Gewert, Berit; Plassmann, Merle M; MacLeod, Matthew

2015-09-01

Each year vast amounts of plastic are produced worldwide. When released to the environment, plastics accumulate, and plastic debris in the world's oceans is of particular environmental concern. More than 60% of all floating debris in the oceans is plastic and amounts are increasing each year. Plastic polymers in the marine environment are exposed to sunlight, oxidants and physical stress, and over time they weather and degrade. The degradation processes and products must be understood to detect and evaluate potential environmental hazards. Some attention has been drawn to additives and persistent organic pollutants that sorb to the plastic surface, but so far the chemicals generated by degradation of the plastic polymers themselves have not been well studied from an environmental perspective. In this paper we review available information about the degradation pathways and chemicals that are formed by degradation of the six plastic types that are most widely used in Europe. We extrapolate that information to likely pathways and possible degradation products under environmental conditions found on the oceans' surface. The potential degradation pathways and products depend on the polymer type. UV-radiation and oxygen are the most important factors that initiate degradation of polymers with a carbon-carbon backbone, leading to chain scission. Smaller polymer fragments formed by chain scission are more susceptible to biodegradation and therefore abiotic degradation is expected to precede biodegradation. When heteroatoms are present in the main chain of a polymer, degradation proceeds by photo-oxidation, hydrolysis, and biodegradation. Degradation of plastic polymers can lead to low molecular weight polymer fragments, like monomers and oligomers, and formation of new end groups, especially carboxylic acids.

Badlands and the Carbon cycle: a significant source of petrogenic organic carbon in rivers and marine environments?

Science.gov (United States)

Copard, Yoann; Eyrolle-Boyer, Frederique; Radakovitch, Olivier; Poirel, Alain; Raimbault, Patrick; Lebouteiller, Caroline; Gairoard, Stéphanie; Di-Giovanni, Christian

2016-04-01

A key issue in the study of carbon biogeochemical cycle is to well constrain each carbon origin in term of fluxes between all C-reservoirs. From continental surfaces to oceans, rivers convey particulate organic carbon originate from the biomass (biospheric OC) and /or from the sedimentary rocks (petrogenic OC). Existence and importance of this petrogenic OC export to oceans was debated for several decades (see Copard et al., 2007 and ref.), but it is now assumed that 20% of the global carbon export to ocean has a geological origin (Galy et al., 2015). The main current challenge is to constrain the major contributors to this petrogenic OC flux. Amongst the expected sedimentary sources of petrogenic OC in rivers, sedimentary rocks forming badlands can be rightly considered as some viable candidates. Indeed these rocks show a strong erosion rate, may exceed 50 kt km-2 y-1 and in addition, shales, marls and argillaceous rocks, frequently forming badlands (see Nadal-Romero et al., 2011 for the Mediterranean area), contain a significant amount of petrogenic OC (frequently over 0.50 wt. %, Ronov and Yaroshevsky 1976). Our work illustrates the contribution of badlands, mainly distributed within the Durance catchment (a main tributary of the Rhône river), in the petrogenic OC export to the Mediterranean Sea. The approach is based on (i) the use of previous and new data on radiogenic carbon, (ii) bulk organic geochemistry (Rock-Eval pyrolysis), (iii) optical quantification of particulate OM (palynofacies), performed on suspended sediments from the Durance, the Rhône rivers and from small rivers draining the badlands. A mean erosion rate of badlands, previously calculated for instrumented catchments (SOERE Draix-Bléone, Graz et al., 2012) was also applied to the badlands disseminated within the Durance catchment. These different methodologies converge to a petrogenic contribution of the OC export to the Mediterranean Sea close to 30 %. Badlands from the Durance catchment

Transfer of organic carbon through marine water columns to sediments – insights from stable and radiocarbon isotopes of lipid biomarkers

OpenAIRE

S. G. Wakeham; A. P. McNichol

2014-01-01

Compound-specific 13C and 14C compositions of diverse lipid biomarkers (fatty acids, alkenones, hydrocarbons, sterols and fatty alcohols) were measured in sinking particulate matter collected in sediment traps and from underlying surface sediments in the Black Sea, the Arabian Sea and the Ross Sea. The goal was to develop a multiparameter approach to constrain relative inputs of organic carbon (OC) from marine biomass, terrigenous vascular-plant and relict-kerogen sources. U...

Arctic carbon cycling

NARCIS (Netherlands)

Christensen, Torben R; Rysgaard, SØREN; Bendtsen, JØRGEN; Else, Brent; Glud, Ronnie N; van Huissteden, J.; Parmentier, F.J.W.; Sachs, Torsten; Vonk, J.E.

2017-01-01

The marine Arctic is considered a net carbon sink, with large regional differences in uptake rates. More regional modelling and observational studies are required to reduce the uncertainty among current estimates. Robust projections for how the Arctic Ocean carbon sink may evolve in the future are

Copepods use chemical trails to find sinking marine snow aggregates

DEFF Research Database (Denmark)

Lombard, Fabien; Koski, Marja; Kiørboe, Thomas

2013-01-01

Copepods are major consumers of sinking marine particles and hence reduce the efficiency of the biological carbon pump. Their high abundance on marine snow suggests that they can detect sinking particles remotely. By means of laboratory observations, we show that the copepod Temora longicornis ca...

Marine oxygen holes as a consequence of oceanic acidification

Science.gov (United States)

Hofmann, M.; Schellnhuber, H.-J.

2009-04-01

An increase of atmospheric CO2 levels will not only drive future global mean temperatures towards values unprecedented during the whole Quaternary, but will also lead to an acidification of sea water which could harm the marine biota. Here we assess possible impacts of elevated atmospheric CO2 concentrations on the marine biological carbon pump by utilizing a business-as-usual emission scenario of anthropogenic CO2. A corresponding release of 4075 Petagrams of Carbon in total has been applied to simulate the current millennium by employing an Earth System Model of Intermediate Complexity (EMIC). This work is focused on studying the implications of reduced biogenic calcification caused by an increasing degree of oceanic acidification on the marine biological carbon pump. The attenuation of biogenic calcification imposes a small negative feedback on rising atmospheric pCO2 levels, tending to stabilize the Earth's climate. Since mineral ballast, notably particulate CaCO3, plays a dominant role in carrying organic matter through the water column, a reduction of its export fluxes weakens the strength of the biological carbon pump. There is, however, a dramatic effect discovered in our model world with severe consequences: since organic matter is oxidized in shallow waters when mineral-ballast fluxes weaken, oxygen holes (hypoxic zones) start to expand considerably in the oceans with potentially harmful impacts on a variety of marine ecosystems. Our study indicates that unbridled ocean acidification would exacerbate the observed hypoxia trends due to various environmental factors as reported in recent empirical studies.

Persistent Organic Pollutants in Biotic and Abiotic Components of Antarctic Pristine Environment

Science.gov (United States)

Bhardwaj, Laxmikant; Chauhan, Abhishek; Ranjan, Anuj; Jindal, Tanu

2018-05-01

Over the past decades, research in Antarctica has built a new understanding of Antarctica, its past, present and future. Human activities and long-range pollutants are increasing on the Antarctic continent. Research on persistent organic pollutants (POPs) has been carried out internationally by several countries having their permanent research stations to explain the impact of an ever increasing range of POPs in Antarctic ecosystem. POPs have been detected in Antarctica despite its geographical isolation and almost complete absence of human settlements. The presence of POPs in different abiotic (atmosphere, water bodies, sediments, soil, sea ice) and biotic components (mosses, lichens, krill, penguins, skua, etc.) in Antarctica has been studied and documented around for decades and has either been banned or strictly regulated but is still found in the environment. This review focuses on recent research pertaining to sources and occurrence of POPs in Antarctic lake water, soil, sediment, lichen, mosses and other Antarctic marine community. This review also proposes to summarize the current state of research on POPs in Antarctica environment and draw the earliest conclusions on possible significance of POPs in Antarctica based on presently available information from related Antarctic environment.

Titania may produce abiotic oxygen atmospheres on habitable exoplanets.

Science.gov (United States)

Narita, Norio; Enomoto, Takafumi; Masaoka, Shigeyuki; Kusakabe, Nobuhiko

2015-09-10

The search for habitable exoplanets in the Universe is actively ongoing in the field of astronomy. The biggest future milestone is to determine whether life exists on such habitable exoplanets. In that context, oxygen in the atmosphere has been considered strong evidence for the presence of photosynthetic organisms. In this paper, we show that a previously unconsidered photochemical mechanism by titanium (IV) oxide (titania) can produce abiotic oxygen from liquid water under near ultraviolet (NUV) lights on the surface of exoplanets. Titania works as a photocatalyst to dissociate liquid water in this process. This mechanism offers a different source of a possibility of abiotic oxygen in atmospheres of exoplanets from previously considered photodissociation of water vapor in upper atmospheres by extreme ultraviolet (XUV) light. Our order-of-magnitude estimation shows that possible amounts of oxygen produced by this abiotic mechanism can be comparable with or even more than that in the atmosphere of the current Earth, depending on the amount of active surface area for this mechanism. We conclude that titania may act as a potential source of false signs of life on habitable exoplanets.

Oxygen dependency of neutrophilic Fe(II) oxidation by Leptothrix differs from abiotic reaction

NARCIS (Netherlands)

Vollrath, S.; Behrends, T.; Van Cappellen, P.

2012-01-01

Neutrophilic Fe(II) oxidizing microorganisms are found in many natural environments. It has been hypothesized that, at low oxygen concentrations, microbial iron oxidation is favored over abiotic oxidation. Here, we compare the kinetics of abiotic Fe(II) oxidation to oxidation in the presence of

Fractionation between inorganic and organic carbon during the Lomagundi (2.22 2.1 Ga) carbon isotope excursion

Science.gov (United States)

Bekker, A.; Holmden, C.; Beukes, N. J.; Kenig, F.; Eglinton, B.; Patterson, W. P.

2008-07-01

The Lomagundi (2.22-2.1 Ga) positive carbon isotope excursion in shallow-marine sedimentary carbonates has been associated with the rise in atmospheric oxygen, but subsequent studies have demonstrated that the carbon isotope excursion was preceded by the rise in atmospheric oxygen. The amount of oxygen released to the exosphere during the Lomagundi excursion is constrained by the average global fractionation between inorganic and organic carbon, which is poorly characterized. Because dissolved inorganic and organic carbon reservoirs were arguably larger in the Paleoproterozoic ocean, at a time of lower solar luminosity and lower ocean redox state, decoupling between these two variables might be expected. We determined carbon isotope values of carbonate and organic matter in carbonates and shales of the Silverton Formation, South Africa and in the correlative Sengoma Argillite Formation, near the border in Botswana. These units were deposited between 2.22 and 2.06 Ga along the margin of the Kaapvaal Craton in an open-marine deltaic setting and experienced lower greenschist facies metamorphism. The prodelta to offshore marine shales are overlain by a subtidal carbonate sequence. Carbonates exhibit elevated 13C values ranging from 8.3 to 11.2‰ vs. VPDB consistent with deposition during the Lomagundi positive excursion. The total organic carbon (TOC) contents range from 0.01 to 0.6% and δ13C values range from - 24.8 to - 13.9‰. Thus, the isotopic fractionation between organic and carbonate carbon was on average 30.3 ± 2.8‰ ( n = 32) in the shallow-marine environment. The underlying Sengoma shales have highly variable TOC contents (0.14 to 21.94%) and δ13C values (- 33.7 to - 20.8‰) with an average of - 27.0 ± 3.0‰ ( n = 50). Considering that the shales were also deposited during the Lomagundi excursion, and taking δ13C values of the overlying carbonates as representative of the δ13C value of dissolved inorganic carbon during shale deposition, a carbon

Understanding the Posttranscriptional Regulation of Plant Responses to Abiotic Stress

KAUST Repository

AlShareef, Sahar A.

2017-06-01

Constitutive and alternative splicing of pre-mRNAs from multiexonic genes controls the diversity of the proteome; these precisely regulated processes also fine-tune responses to cues related to growth, development, and biotic and abiotic stresses. Recent work showed that AS is pervasive across plant species, with more than 60% of intron-containing genes producing different isoforms. Mammalian cell-based assays have discovered various AS small-molecule inhibitors that perturb splicing and thereby provide invaluable tools for use as chemical probes to uncover the molecular underpinnings of splicing regulation and as potential anticancer compounds. Here, I show that the macrolide Pladienolide B (PB) and herboxidiene (GEX1A) inhibits both constitutive and alternative splicing, mimics an abiotic stress signal, and activates the abscisic acid (ABA) pathway in plants. Moreover, PB and GEX1A activate genome-wide transcriptional patterns involved in abiotic stress responses in plants. PB and GEX1A treatment triggered the ABA signaling pathway, activated ABA-inducible promoters, and led to stomatal closure. Interestingly, PB and GEX1A elicited similar cellular changes, including alterations in the patterns of transcription and splicing, suggesting that these compounds might target the same spliceosome complex in plant cells. This work establishes PB and GEX1A as potent splicing inhibitors in plants that can be used to probe the assembly, dynamics, and molecular functions of the spliceosome and to study the interplay between splicing stress and abiotic stresses, as well as having potential biotechnological applications.

Salt lakes of Western Australia - Natural abiotic formation of volatile organic compounds

Science.gov (United States)

Krause, T.; Studenroth, S.; Mulder, I.; Tubbesing, C.; Kotte, K.; Ofner, J.; Junkermann, W.; Schöler, H. F.

2012-04-01

/MS. Especially the acidic lakes are sources for trihalomethanes in agreement with laboratory studies on model compounds like catechol [3]. Other compounds that are formed are chloromethane, -butane, -hexane and heptane as well as monocyclic terpenes and furan derivatives. Additionally, there are different sulphur compounds such as thiophene derivatives, carbon disulfide and dimethyl sulfide. Western Australia offers a variety of hypersaline environments with various hydrogeochemical parameters that will help to understand the abiotic formation of different volatile organic compounds. The field of research includes the complex relationships between agriculture, secondary salinisation and particle formation from volatile organic compounds emitted from the salt lakes. [1] Williams, 2001, Hydrobiologia, 466, 329-337. [2] Junkermann et al., 2009, Atmos. Chem. Phys., 9, 6531-6539. [3] Huber et al., 2009, Environ. Sci. Technol., 43 (13), 4934-4939.

Cell Wall Metabolism in Response to Abiotic Stress

Science.gov (United States)

Gall, Hyacinthe Le; Philippe, Florian; Domon, Jean-Marc; Gillet, Françoise; Pelloux, Jérôme; Rayon, Catherine

2015-01-01

This review focuses on the responses of the plant cell wall to several abiotic stresses including drought, flooding, heat, cold, salt, heavy metals, light, and air pollutants. The effects of stress on cell wall metabolism are discussed at the physiological (morphogenic), transcriptomic, proteomic and biochemical levels. The analysis of a large set of data shows that the plant response is highly complex. The overall effects of most abiotic stress are often dependent on the plant species, the genotype, the age of the plant, the timing of the stress application, and the intensity of this stress. This shows the difficulty of identifying a common pattern of stress response in cell wall architecture that could enable adaptation and/or resistance to abiotic stress. However, in most cases, two main mechanisms can be highlighted: (i) an increased level in xyloglucan endotransglucosylase/hydrolase (XTH) and expansin proteins, associated with an increase in the degree of rhamnogalacturonan I branching that maintains cell wall plasticity and (ii) an increased cell wall thickening by reinforcement of the secondary wall with hemicellulose and lignin deposition. Taken together, these results show the need to undertake large-scale analyses, using multidisciplinary approaches, to unravel the consequences of stress on the cell wall. This will help identify the key components that could be targeted to improve biomass production under stress conditions. PMID:27135320

The role of low-temperature organic matter diagenesis in carbonate precipitation within a marine deposit

International Nuclear Information System (INIS)

Miyakawa, Kazuya; Ishii, Eiichi; Hirota, Akinari; Komatsu, Daisuke D.; Ikeya, Kosuke; Tsunogai, Urumu

2017-01-01

degradation of organic matter has proceeded too far for any more CO_2 to be produced. Thus, carbonate precipitation is initiated when pH rises due to microbial CO_2 reduction. The contrast between the occurrence of carbonate veins in the Koetoi and Wakkanai formations can be explained by our results, which can also be applied to general carbonate behavior in marine sedimentary rocks. - Highlights: • δ"1"3C – δD systematics of coexisting CH_4 and CO_2. • Extreme-"1"3C enrichment caused by microbial CO_2 reduction in a closed system. • Organic matter diagenesis plays an important role in carbonate precipitation.

Interactions Between Prokaryotes and Dissolved Organic Matter in Marine Waters

DEFF Research Database (Denmark)

Traving, Sachia Jo

organic bound carbon equal in size to atmospheric carbon dioxide. Prokaryotes mediate the fate of a large part of marine DOM, which is their principal source of energy and substrate. However, a large fraction is also left behind in the water column persisting for millennia, and prokaryotes may hold...... the key to understanding the mechanisms controlling the cycling of DOM within marine waters. In the thesis presented here, the aim was to investigate the activity and composition of prokaryotes to determine their functional role in DOM utilization. The thesis incorporates a range of study systems...

Understanding marine microbes - Trends and future diections

Digital Repository Service at National Institute of Oceanography (India)

Chandramohan, D.

conducted include microbial biogeochemical cycles (carbon, sulphur, nitrogen and phosphorous), diseases of marine plants and animals, biodegradation of crude oil and natural biopolymers, heterotrophic activities, free enzyme activities in sediments...

Development of tailored indigenous marine consortia for the degradation of naturally weathered polyethylene films.

Science.gov (United States)

Syranidou, Evdokia; Karkanorachaki, Katerina; Amorotti, Filippo; Repouskou, Eftychia; Kroll, Kevin; Kolvenbach, Boris; Corvini, Philippe F-X; Fava, Fabio; Kalogerakis, Nicolas

2017-01-01

This study investigated the potential of bacterial-mediated polyethylene (PE) degradation in a two-phase microcosm experiment. During phase I, naturally weathered PE films were incubated for 6 months with the indigenous marine community alone as well as bioaugmented with strains able to grow in minimal medium with linear low-density polyethylene (LLDPE) as the sole carbon source. At the end of phase I the developed biofilm was harvested and re-inoculated with naturally weathered PE films. Bacteria from both treatments were able to establish an active population on the PE surfaces as the biofilm community developed in a time dependent way. Moreover, a convergence in the composition of these communities was observed towards an efficient PE degrading microbial network, comprising of indigenous species. In acclimated communities, genera affiliated with synthetic (PE) and natural (cellulose) polymer degraders as well as hydrocarbon degrading bacteria were enriched. The acclimated consortia (indigenous and bioaugmented) reduced more efficiently the weight of PE films in comparison to non-acclimated bacteria. The SEM images revealed a dense and compact biofilm layer and signs of bio-erosion on the surface of the films. Rheological results suggest that the polymers after microbial treatment had wider molecular mass distribution and a marginally smaller average molar mass suggesting biodegradation as opposed to abiotic degradation. Modifications on the surface chemistry were observed throughout phase II while the FTIR profiles of microbially treated films at month 6 were similar to the profiles of virgin PE. Taking into account the results, we can suggest that the tailored indigenous marine community represents an efficient consortium for degrading weathered PE plastics.

Development of tailored indigenous marine consortia for the degradation of naturally weathered polyethylene films.

Directory of Open Access Journals (Sweden)

Evdokia Syranidou

Full Text Available This study investigated the potential of bacterial-mediated polyethylene (PE degradation in a two-phase microcosm experiment. During phase I, naturally weathered PE films were incubated for 6 months with the indigenous marine community alone as well as bioaugmented with strains able to grow in minimal medium with linear low-density polyethylene (LLDPE as the sole carbon source. At the end of phase I the developed biofilm was harvested and re-inoculated with naturally weathered PE films. Bacteria from both treatments were able to establish an active population on the PE surfaces as the biofilm community developed in a time dependent way. Moreover, a convergence in the composition of these communities was observed towards an efficient PE degrading microbial network, comprising of indigenous species. In acclimated communities, genera affiliated with synthetic (PE and natural (cellulose polymer degraders as well as hydrocarbon degrading bacteria were enriched. The acclimated consortia (indigenous and bioaugmented reduced more efficiently the weight of PE films in comparison to non-acclimated bacteria. The SEM images revealed a dense and compact biofilm layer and signs of bio-erosion on the surface of the films. Rheological results suggest that the polymers after microbial treatment had wider molecular mass distribution and a marginally smaller average molar mass suggesting biodegradation as opposed to abiotic degradation. Modifications on the surface chemistry were observed throughout phase II while the FTIR profiles of microbially treated films at month 6 were similar to the profiles of virgin PE. Taking into account the results, we can suggest that the tailored indigenous marine community represents an efficient consortium for degrading weathered PE plastics.

Carotenoids from Marine Organisms: Biological Functions and Industrial Applications

Directory of Open Access Journals (Sweden)

Christian Galasso

2017-11-01

Full Text Available As is the case for terrestrial organisms, carotenoids represent the most common group of pigments in marine environments. They are generally biosynthesized by all autotrophic marine organisms, such as bacteria and archaea, algae and fungi. Some heterotrophic organisms also contain carotenoids probably accumulated from food or partly modified through metabolic reactions. These natural pigments are divided into two chemical classes: carotenes (such as lycopene and α- and β-carotene that are composed of hydrogen and carbon; xanthophylls (such as astaxanthin, fucoxanthin and lutein, which are constituted by hydrogen, carbon and oxygen. Carotenoids, as antioxidant compounds, assume a key role in the protection of cells. In fact, quenching of singlet oxygen, light capture and photosynthesis protection are the most relevant biological functions of carotenoids. The present review aims at describing (i the biological functions of carotenoids and their benefits for human health, (ii the most common carotenoids from marine organisms and (iii carotenoids having large success in pharmaceutical, nutraceutical and cosmeceutical industries, highlighting the scientific progress in marine species cultivation for natural pigments production.

Changes in biotic and abiotic processes following mangrove clearing

Science.gov (United States)

Granek, Elise; Ruttenberg, Benjamin I.

2008-12-01

Mangrove forests, important tropical coastal habitats, are in decline worldwide primarily due to removal by humans. Changes to mangrove systems can alter ecosystem properties through direct effects on abiotic factors such as temperature, light and nutrient supply or through changes in biotic factors such as primary productivity or species composition. Despite the importance of mangroves as transitional habitats between land and sea, little research has examined changes that occur when they are cleared. We examined changes in a number of biotic and abiotic factors following the anthropogenic removal of red mangroves ( Rhizophora mangle) in the Panamanian Caribbean, including algal biomass, algal diversity, algal grazing rates, light penetration, temperature, sedimentation rates and sediment organic content. In this first study examining multiple ecosystem-level effects of mangrove disturbance, we found that areas cleared of mangroves had higher algal biomass and richness than intact mangrove areas. This increase in algal biomass and richness was likely due to changes in abiotic factors (e.g. light intensity, temperature), but not biotic factors (fish herbivory). Additionally the algal and cyanobacterial genera dominating mangrove-cleared areas were rare in intact mangroves and included a number of genera that compete with coral for space on reefs. Interestingly, sedimentation rates did not differ between intact and cleared areas, but the sediments that accumulated in intact mangroves had higher organic content. These findings are the first to demonstrate that anthropogenic clearing of mangroves changes multiple biotic and abiotic processes in mangrove forests and that some of these changes may influence adjacent habitats such as coral reefs and seagrass beds. Additional research is needed to further explore the community and ecosystem-level effects of mangrove clearing and their influence on adjacent habitats, but it is clear that mangrove conservation is an

Wheat EST resources for functional genomics of abiotic stress

Directory of Open Access Journals (Sweden)

Links Matthew G

2006-06-01

Full Text Available Abstract Background Wheat is an excellent species to study freezing tolerance and other abiotic stresses. However, the sequence of the wheat genome has not been completely characterized due to its complexity and large size. To circumvent this obstacle and identify genes involved in cold acclimation and associated stresses, a large scale EST sequencing approach was undertaken by the Functional Genomics of Abiotic Stress (FGAS project. Results We generated 73,521 quality-filtered ESTs from eleven cDNA libraries constructed from wheat plants exposed to various abiotic stresses and at different developmental stages. In addition, 196,041 ESTs for which tracefiles were available from the National Science Foundation wheat EST sequencing program and DuPont were also quality-filtered and used in the analysis. Clustering of the combined ESTs with d2_cluster and TGICL yielded a few large clusters containing several thousand ESTs that were refractory to routine clustering techniques. To resolve this problem, the sequence proximity and "bridges" were identified by an e-value distance graph to manually break clusters into smaller groups. Assembly of the resolved ESTs generated a 75,488 unique sequence set (31,580 contigs and 43,908 singletons/singlets. Digital expression analyses indicated that the FGAS dataset is enriched in stress-regulated genes compared to the other public datasets. Over 43% of the unique sequence set was annotated and classified into functional categories according to Gene Ontology. Conclusion We have annotated 29,556 different sequences, an almost 5-fold increase in annotated sequences compared to the available wheat public databases. Digital expression analysis combined with gene annotation helped in the identification of several pathways associated with abiotic stress. The genomic resources and knowledge developed by this project will contribute to a better understanding of the different mechanisms that govern stress tolerance in

Abiotic drivers of Chihuahuan Desert plant communities

Science.gov (United States)

Laura Marie Ladwig

2014-01-01

Within grasslands, precipitation, fire, nitrogen (N) addition, and extreme temperatures influence community composition and ecosystem function. The differential influences of these abiotic factors on Chihuahuan Desert grassland communities was examined within the Sevilleta National Wildlife Refuge, located in central New Mexico, U.S.A. Although fire is a natural...

Mode change of millennial CO2 variability during the last glacial cycle associated with a bipolar marine carbon seesaw.

Science.gov (United States)

Bereiter, Bernhard; Lüthi, Dieter; Siegrist, Michael; Schüpbach, Simon; Stocker, Thomas F; Fischer, Hubertus

2012-06-19

Important elements of natural climate variations during the last ice age are abrupt temperature increases over Greenland and related warming and cooling periods over Antarctica. Records from Antarctic ice cores have shown that the global carbon cycle also plays a role in these changes. The available data shows that atmospheric CO(2) follows closely temperatures reconstructed from Antarctic ice cores during these variations. Here, we present new high-resolution CO(2) data from Antarctic ice cores, which cover the period between 115,000 and 38,000 y before present. Our measurements show that also smaller Antarctic warming events have an imprint in CO(2) concentrations. Moreover, they indicate that during Marine Isotope Stage (MIS) 5, the peak of millennial CO(2) variations lags the onset of Dansgaard/Oeschger warmings by 250 ± 190 y. During MIS 3, this lag increases significantly to 870 ± 90 y. Considerations of the ocean circulation suggest that the millennial variability associated with the Atlantic Meridional Overturning Circulation (AMOC) undergoes a mode change from MIS 5 to MIS 4 and 3. Ocean carbon inventory estimates imply that during MIS 3 additional carbon is derived from an extended mass of carbon-enriched Antarctic Bottom Water. The absence of such a carbon-enriched water mass in the North Atlantic during MIS 5 can explain the smaller amount of carbon released to the atmosphere after the Antarctic temperature maximum and, hence, the shorter lag. Our new data provides further constraints for transient coupled carbon cycle-climate simulations during the entire last glacial cycle.

Climate sensitivity of marine energy

OpenAIRE

Harrison, Gareth; Wallace, Robin

2005-01-01

Marine energy has a significant role to play in lowering carbon emissions within the energy sector. Paradoxically, it may be susceptible to changes in climate that will result from rising carbon emissions. Wind patterns are expected to change and this will alter wave regimes. Despite a lack of definite proof of a link to global warming, wind and wave conditions have been changing over the past few decades. Changes in the wind and wave climate will affect offshore wind and wave energy conversi...

Bicarbonate uptake by marine Crenarchaeota

NARCIS (Netherlands)

Wuchter, C.; Schouten, S.; Boschker, H.T.S.; Sinninghe Damsté, J.S.

2003-01-01

Biphytanyl membrane lipids and 16S rRNA sequences derived from marine Crenarchaeota were detected in shallow North Sea surface water in February 2002. To investigate the carbon fixation mechanism of these uncultivated archaea in situ 13C bicarbonate tracer experiments were performed with this water

Origin of Abiotic Methane in Submarine Hydrothermal Systems

Science.gov (United States)

Seewald, J. S.; German, C. R.; Grozeva, N. G.; Klein, F.; McDermott, J. M.; Ono, S.; Reeves, E. P.; Wang, D. T.

2018-05-01

Results of recent investigations into the chemical and isotopic composition of actively venting submarine hydrothermal fluids and volatile species trapped in fluid inclusions will be discussed in the context of processes responsible for abiotic CH4 formation.

Abiotic and microbial interactions during anaerobic transformations of Fe(II and NOx-

Directory of Open Access Journals (Sweden)

Flynn ePicardal

2012-03-01

Full Text Available Microbial Fe(II oxidation using NO3- as the terminal electron acceptor (nitrate-dependent Fe(II oxidation; NDFO has been studied for over 15 years. Although there are reports of autotrophic isolates and stable enrichments, many of the bacteria capable of NDFO are known organotrophic NO3- -reducers that require the presence of an organic, primary substrate, e.g., acetate, for significant amounts of Fe(II oxidation. Although the thermodynamics of Fe(II oxidation are favorable when coupled to either NO3- or NO2- reduction, the kinetics of abiotic Fe(II oxidation by NO3- are relatively slow except under special conditions. NDFO is typically studied in batch cultures containing millimolar concentrations of Fe(II, NO3-, and the primary substrate. In such systems, NO2- is often observed to accumulate in culture media during Fe(II oxidation. Compared to NO3-, abiotic reactions of biogenic NO2- and Fe(II are relatively rapid. The kinetics and reaction pathways of Fe(II oxidation by NO2- are strongly affected by medium composition and pH, reactant concentration, and the presence of Fe(II-sorptive surfaces, e.g., Fe(III oxyhydroxides and cellular surfaces. In batch cultures, the combination of abiotic and microbial Fe(II oxidation can alter product distribution and, more importantly, results in the formation of intracellular precipitates and extracellular Fe(III oxyhydroxide encrustations that apparently limit further cell growth and Fe(II oxidation. Unless steps are taken to minimize or account for potential abiotic reactions, results of microbial NDFO studies can be obfuscated by artifacts of the chosen experimental conditions, the use of inappropriate analytical methods, and the resulting uncertainties about the relative importance of abiotic and microbial reactions.In this manuscript, abiotic reactions of NO3- and NO2- with aqueous Fe2+, chelated Fe(II, and solid-phase Fe(II are reviewed along with factors that can influence overall NDFO reac

Effects of Phytoplankton Growth Phase on Delayed Settling Behavior of Marine Snow Aggregates at Sharp Density Transitions

Science.gov (United States)

Proctor, K. W.; Montgomery, Q. W.; Prairie, J. C.

2016-02-01

Marine snow aggregates play a fundamental role in the marine carbon cycle. Since marine snow aggregates are larger and thus sink faster than individual phytoplankton, aggregates often dominate carbon flux. Previous studies have shown that marine snow aggregates will significantly decrease their settling velocity when passing through sharp density transitions within the ocean, a phenomenon defined as delayed settling. Given the importance of aggregate settling to carbon export, these small-scale changes in aggregate settling dynamics may have significant impacts on the efficiency of the biological pump. However, there is still a lack of knowledge about how different physical properties of aggregates can affect this delayed settling. In this study, we investigated the effect of phytoplankton growth phase on delayed settling behavior. Using phytoplankton cultures stopped at four different growth phases, we formed marine snow aggregates in the laboratory in rotating cylindrical tanks. We then observed individual aggregates as they settled through a stratified tank. We will present data which illustrates that aggregates experience greatly reduced settling rates when passing through sharp density gradients and that the growth phase of the phytoplankton used to form these aggregates has a significant effect on this delayed settling behavior. A thorough understanding of the impact of phytoplankton growth phase on the delayed settling behavior of marine snow will offer insight into the way phytoplankton growth phase may influence the efficiency of the biological pump, carbon flux, and the carbon cycle as a whole.

Carbon and Oxygen isotopic composition in paleoenvironmental determination

International Nuclear Information System (INIS)

Silva, J.R.M. da.

1978-01-01

This work reports that the carbon and oxygen isotopic composition separate the mollusks from marine environment of the mollusks from continental environment in two groups isotopically different, making the biological control outdone by environment control, in the isotopic fragmentation mechanisms. The patterns from the continental environment are more rich in O 16 than the patterns from marine environments. The C 12 is also more frequent in the mollusks from continental environments. The carbon isotopic composition in paterns from continental environments is situated betwen - 10.31 and - 4,05% and the oxygen isotopic composition is situated between - 6,95 and - 2,41%. To the marine environment patterns the carbon isotopic composition is between - 2,08 and + 2,65% and the oxigen isotopic composition is between - 2,08 and + 0,45%. Was also analysed fossil marine mollusks shells and their isotopic composition permit the formulation of hypothesis about the environment which they lived. (C.D.G.) [pt

Abiotic Deposition of Fe Complexes onto Leptothrix Sheaths

Science.gov (United States)

Kunoh, Tatsuki; Hashimoto, Hideki; McFarlane, Ian R.; Hayashi, Naoaki; Suzuki, Tomoko; Taketa, Eisuke; Tamura, Katsunori; Takano, Mikio; El-Naggar, Mohamed Y.; Kunoh, Hitoshi; Takada, Jun

2016-01-01

Bacteria classified in species of the genus Leptothrix produce extracellular, microtubular, Fe-encrusted sheaths. The encrustation has been previously linked to bacterial Fe oxidases, which oxidize Fe(II) to Fe(III) and/or active groups of bacterial exopolymers within sheaths to attract and bind aqueous-phase inorganics. When L. cholodnii SP-6 cells were cultured in media amended with high Fe(II) concentrations, Fe(III) precipitates visibly formed immediately after addition of Fe(II) to the medium, suggesting prompt abiotic oxidation of Fe(II) to Fe(III). Intriguingly, these precipitates were deposited onto the sheath surface of bacterial cells as the population was actively growing. When Fe(III) was added to the medium, similar precipitates formed in the medium first and were abiotically deposited onto the sheath surfaces. The precipitates in the Fe(II) medium were composed of assemblies of globular, amorphous particles (ca. 50 nm diameter), while those in the Fe(III) medium were composed of large, aggregated particles (≥3 µm diameter) with a similar amorphous structure. These precipitates also adhered to cell-free sheaths. We thus concluded that direct abiotic deposition of Fe complexes onto the sheath surface occurs independently of cellular activity in liquid media containing Fe salts, although it remains unclear how this deposition is associated with the previously proposed mechanisms (oxidation enzyme- and/or active group of organic components-involved) of Fe encrustation of the Leptothrix sheaths. PMID:27271677

Abiotic Deposition of Fe Complexes onto Leptothrix Sheaths

Directory of Open Access Journals (Sweden)

Tatsuki Kunoh

2016-06-01

Full Text Available Bacteria classified in species of the genus Leptothrix produce extracellular, microtubular, Fe-encrusted sheaths. The encrustation has been previously linked to bacterial Fe oxidases, which oxidize Fe(II to Fe(III and/or active groups of bacterial exopolymers within sheaths to attract and bind aqueous-phase inorganics. When L. cholodnii SP-6 cells were cultured in media amended with high Fe(II concentrations, Fe(III precipitates visibly formed immediately after addition of Fe(II to the medium, suggesting prompt abiotic oxidation of Fe(II to Fe(III. Intriguingly, these precipitates were deposited onto the sheath surface of bacterial cells as the population was actively growing. When Fe(III was added to the medium, similar precipitates formed in the medium first and were abiotically deposited onto the sheath surfaces. The precipitates in the Fe(II medium were composed of assemblies of globular, amorphous particles (ca. 50 nm diameter, while those in the Fe(III medium were composed of large, aggregated particles (≥3 µm diameter with a similar amorphous structure. These precipitates also adhered to cell-free sheaths. We thus concluded that direct abiotic deposition of Fe complexes onto the sheath surface occurs independently of cellular activity in liquid media containing Fe salts, although it remains unclear how this deposition is associated with the previously proposed mechanisms (oxidation enzyme- and/or active group of organic components-involved of Fe encrustation of the Leptothrix sheaths.

A marine heatwave drives massive losses from the world's largest seagrass carbon stocks

Science.gov (United States)

Arias-Ortiz, A.; Serrano, O.; Masqué, P.; Lavery, P. S.; Mueller, U.; Kendrick, G. A.; Rozaimi, M.; Esteban, A.; Fourqurean, J. W.; Marbà, N.; Mateo, M. A.; Murray, K.; Rule, M. J.; Duarte, C. M.

2018-04-01

Seagrass ecosystems contain globally significant organic carbon (C) stocks. However, climate change and increasing frequency of extreme events threaten their preservation. Shark Bay, Western Australia, has the largest C stock reported for a seagrass ecosystem, containing up to 1.3% of the total C stored within the top metre of seagrass sediments worldwide. On the basis of field studies and satellite imagery, we estimate that 36% of Shark Bay's seagrass meadows were damaged following a marine heatwave in 2010/2011. Assuming that 10 to 50% of the seagrass sediment C stock was exposed to oxic conditions after disturbance, between 2 and 9 Tg CO2 could have been released to the atmosphere during the following three years, increasing emissions from land-use change in Australia by 4-21% per annum. With heatwaves predicted to increase with further climate warming, conservation of seagrass ecosystems is essential to avoid adverse feedbacks on the climate system.

Microbial Surface Colonization and Biofilm Development in Marine Environments

Science.gov (United States)

2015-01-01

SUMMARY Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms. Surface colonization and subsequent biofilm formation and development provide numerous advantages to these organisms and support critical ecological and biogeochemical functions in the changing marine environment. Microbial surface association also contributes to deleterious effects such as biofouling, biocorrosion, and the persistence and transmission of harmful or pathogenic microorganisms and their genetic determinants. The processes and mechanisms of colonization as well as key players among the surface-associated microbiota have been studied for several decades. Accumulating evidence indicates that specific cell-surface, cell-cell, and interpopulation interactions shape the composition, structure, spatiotemporal dynamics, and functions of surface-associated microbial communities. Several key microbial processes and mechanisms, including (i) surface, population, and community sensing and signaling, (ii) intraspecies and interspecies communication and interaction, and (iii) the regulatory balance between cooperation and competition, have been identified as critical for the microbial surface association lifestyle. In this review, recent progress in the study of marine microbial surface colonization and biofilm development is synthesized and discussed. Major gaps in our knowledge remain. We pose questions for targeted investigation of surface-specific community-level microbial features, answers to which would advance our understanding of surface-associated microbial community ecology and the biogeochemical functions of these communities at levels from molecular mechanistic details through systems biological integration. PMID:26700108

Ningaloo Reef: Shallow Marine Habitats Mapped Using a Hyperspectral Sensor

Science.gov (United States)

Kobryn, Halina T.; Wouters, Kristin; Beckley, Lynnath E.; Heege, Thomas

2013-01-01

Research, monitoring and management of large marine protected areas require detailed and up-to-date habitat maps. Ningaloo Marine Park (including the Muiron Islands) in north-western Australia (stretching across three degrees of latitude) was mapped to 20 m depth using HyMap airborne hyperspectral imagery (125 bands) at 3.5 m resolution across the 762 km2 of reef environment between the shoreline and reef slope. The imagery was corrected for atmospheric, air-water interface and water column influences to retrieve bottom reflectance and bathymetry using the physics-based Modular Inversion and Processing System. Using field-validated, image-derived spectra from a representative range of cover types, the classification combined a semi-automated, pixel-based approach with fuzzy logic and derivative techniques. Five thematic classification levels for benthic cover (with probability maps) were generated with varying degrees of detail, ranging from a basic one with three classes (biotic, abiotic and mixed) to the most detailed with 46 classes. The latter consisted of all abiotic and biotic seabed components and hard coral growth forms in dominant or mixed states. The overall accuracy of mapping for the most detailed maps was 70% for the highest classification level. Macro-algal communities formed most of the benthic cover, while hard and soft corals represented only about 7% of the mapped area (58.6 km2). Dense tabulate coral was the largest coral mosaic type (37% of all corals) and the rest of the corals were a mix of tabulate, digitate, massive and soft corals. Our results show that for this shallow, fringing reef environment situated in the arid tropics, hyperspectral remote sensing techniques can offer an efficient and cost-effective approach to mapping and monitoring reef habitats over large, remote and inaccessible areas. PMID:23922921

Interactive biotic and abiotic regulators of soil carbon cycling: evidence from controlled climate experiments on peatland and boreal soils.

Science.gov (United States)

Briones, María Jesús I; McNamara, Niall P; Poskitt, Jan; Crow, Susan E; Ostle, Nicholas J

2014-09-01

Partially decomposed plant and animal remains have been accumulating in organic soils (i.e. >40% C content) for millennia, making them the largest terrestrial carbon store. There is growing concern that, in a warming world, soil biotic processing will accelerate and release greenhouse gases that further exacerbate climate change. However, the magnitude of this response remains uncertain as the constraints are abiotic, biotic and interactive. Here, we examined the influence of resource quality and biological activity on the temperature sensitivity of soil respiration under different soil moisture regimes. Organic soils were sampled from 13 boreal and peatland ecosystems located in the United Kingdom, Ireland, Spain, Finland and Sweden, representing a natural resource quality range of C, N and P. They were incubated at four temperatures (4, 10, 15 and 20 °C) at either 60% or 100% water holding capacity (WHC). Our results showed that chemical and biological properties play an important role in determining soil respiration responses to temperature and moisture changes. High soil C : P and C : N ratios were symptomatic of slow C turnover and long-term C accumulation. In boreal soils, low bacterial to fungal ratios were related to greater temperature sensitivity of respiration, which was amplified in drier conditions. This contrasted with peatland soils which were dominated by bacterial communities and enchytraeid grazing, resulting in a more rapid C turnover under warmer and wetter conditions. The unexpected acceleration of C mineralization under high moisture contents was possibly linked to the primarily role of fermented organic matter, instead of oxygen, in mediating microbial decomposition. We conclude that to improve C model simulations of soil respiration, a better resolution of the interactions occurring between climate, resource quality and the decomposer community will be required. © 2014 John Wiley & Sons Ltd.

Reduced calcification of marine plankton in response to increased atmospheric CO2.

Science.gov (United States)

Riebesell, U; Zondervan, I; Rost, B; Tortell, P D; Zeebe, R E; Morel, F M

2000-09-21

The formation of calcareous skeletons by marine planktonic organisms and their subsequent sinking to depth generates a continuous rain of calcium carbonate to the deep ocean and underlying sediments. This is important in regulating marine carbon cycling and ocean-atmosphere CO2 exchange. The present rise in atmospheric CO2 levels causes significant changes in surface ocean pH and carbonate chemistry. Such changes have been shown to slow down calcification in corals and coralline macroalgae, but the majority of marine calcification occurs in planktonic organisms. Here we report reduced calcite production at increased CO2 concentrations in monospecific cultures of two dominant marine calcifying phytoplankton species, the coccolithophorids Emiliania huxleyi and Gephyrocapsa oceanica. This was accompanied by an increased proportion of malformed coccoliths and incomplete coccospheres. Diminished calcification led to a reduction in the ratio of calcite precipitation to organic matter production. Similar results were obtained in incubations of natural plankton assemblages from the north Pacific ocean when exposed to experimentally elevated CO2 levels. We suggest that the progressive increase in atmospheric CO2 concentrations may therefore slow down the production of calcium carbonate in the surface ocean. As the process of calcification releases CO2 to the atmosphere, the response observed here could potentially act as a negative feedback on atmospheric CO2 levels.

Novel NAC transcription factor TaNAC67 confers enhanced multi-abiotic stress tolerances in Arabidopsis.

Directory of Open Access Journals (Sweden)

Xinguo Mao

Full Text Available Abiotic stresses are major environmental factors that affect agricultural productivity worldwide. NAC transcription factors play pivotal roles in abiotic stress signaling in plants. As a staple crop, wheat production is severely constrained by abiotic stresses whereas only a few NAC transcription factors have been characterized functionally. To promote the application of NAC genes in wheat improvement by biotechnology, a novel NAC gene designated TaNAC67 was characterized in common wheat. To determine its role, transgenic Arabidopsis overexpressing TaNAC67-GFP controlled by the CaMV-35S promoter was generated and subjected to various abiotic stresses for morphological and physiological assays. Gene expression showed that TaNAC67 was involved in response to drought, salt, cold and ABA treatments. Localization assays revealed that TaNAC67 localized in the nucleus. Morphological analysis indicated the transgenics had enhanced tolerances to drought, salt and freezing stresses, simultaneously supported by enhanced expression of multiple abiotic stress responsive genes and improved physiological traits, including strengthened cell membrane stability, retention of higher chlorophyll contents and Na(+ efflux rates, improved photosynthetic potential, and enhanced water retention capability. Overexpression of TaNAC67 resulted in pronounced enhanced tolerances to drought, salt and freezing stresses, therefore it has potential for utilization in transgenic breeding to improve abiotic stress tolerance in crops.

Diagnosis of abiotic and biotic stress factors using the visible symptoms in foliage

International Nuclear Information System (INIS)

Vollenweider, P.; Guenthardt-Goerg, Madeleine S.

2005-01-01

Visible symptoms in the foliage of trees are recorded to monitor the effects of abiotic and biotic stress. Difficulties are reported in diagnosing the origin of stress. The present paper discusses several diagnostic criteria which are usable in different species for a better determination of the stress factor type. A new diagnosis scheme to differentiate between classes of abiotic and biotic stress factors is supplied. Abiotic stress generates gradients of symptoms. The symptom specificity is determined by the degree of interaction between the stress factor and plant defense system. Symptoms caused by abiotic stress and natural autumnal senescence can be morphologically different or undistinguishable according to the stress and plant species. With biotic stress, the class of parasitic is generally recognizable on the basis of the visible symptoms. Structurally and physiologically based explanations of the symptom morphology are still missing for many stress factors. - The morphology and distribution of visible stress symptoms in tree foliage provides diagnostic tools to identify plant defense responses and differentiate stress from natural senescence symptoms

Macroecological patterns in the distribution of marine phytoplankton

DEFF Research Database (Denmark)

Mousing, Erik Askov

stratification limiting the flux of nutrients from the deep ocean). This affect has important implications for the global carbon cycle and should be included in future climate models. In manuscript II, changes in the mean cyst size of dinoflagellates are investigated in relation to temperature changes during...... production, biochemical cycling and have a direct impact on the global carbon cycle through the biological pump. Understanding the processes controlling phytoplankton primary production and community composition at the global scale and how these interact with climate change are, therefore, imperative...... to in situ abiotic conditions (primarily temperature, salinity, mixed layer dynamics and ambient nutrient concentrations) in order to elucidate the primary bottom-up processes that control phytoplankton communities. In order to do this, I investigate and present several data sets that have been assembled...

The effect of β-FeOOH on the corrosion behavior of low carbon steel exposed in tropic marine environment

International Nuclear Information System (INIS)

Ma Yuantai; Li Ying; Wang Fuhui

2008-01-01

The atmospheric corrosion performance of carbon steel exposed in Wanning area, which located in the south part of China with tropic marine environment characters, was studied at different exposure periods (up to 2 years). To investigate the effect of β-FeOOH on the corrosion behavior of carbon steel in high chloride ion environment, rust layer was analyzed by using infrared spectroscopy, scanning electron microscope, X-ray diffraction, and the rusted steel was measured by electrochemical impedance spectroscopy method. The weight loss test indicated that the corrosion rate of carbon steel sharply increased during 6 months' exposure and gradually reduced after longer exposure. The results of rust analysis revealed that the underlying corrosion performance of the carbon steel was dependent on the inherent properties of the rust layers formed under different conditions such as composition and structure. Among all the iron oxide, β-FeOOH exerted significant influence. The presence of a monolayer of the rust as well as β-FeOOH accelerated the corrosion process during the initial exposure stage. EIS data implied that β-FeOOH in the inner layer was gradually consumed and transformed to γ-Fe 2 O 3 in the wet-dry cycle, which was beneficial to protect the substrate and reduced the corrosion rate

Abiotic factors drives floristic variations of fern's metacommunity in an Atlantic Forest remnant.

Science.gov (United States)

Costa, L E N; Farias, R P; Santiago, A C P; Silva, I A A; Barros, I C L

2018-02-15

We analyzed floristic variations in fern's metacommunity at the local scale and their relationship with abiotic factors in an Atlantic Forest remnant of northeastern Brazil. Floristic and environmental variations were accessed on ten plots of 10 × 20 m. We performed cluster analyses, based on Bray-Curtis dissimilarity index to establish the floristic relationship. The influence of abiotic factors: luminosity, temperature, relative air humidity and relative soil moisture was evaluated from a redundancy analysis. We found 24 species belonging to 20 genera and 12 families. The fern's flora showed high floristic heterogeneity (>75% for most of the plot's associations). The fern's metacommunity was structured along an abiotic gradient modulated by temperature, luminosity, and relative soil moisture.

Tracing time in the ocean: Unraveling depositional and preservational timescales using compound-specific radiocarbon analysis of biomarkers from marine sediments

OpenAIRE

Kusch, Stephanie

2010-01-01

Carbon cycle dynamics between the different inorganic and organic carbon pools play an important role in controlling the atmospheric chemical composition, thus, regulating the Earth’s climate. Atmospheric CO2 is fixed into biomass by photosynthesis of terrestrial and marine primary producers. Until final burial in marine sediments, the biologically fixed carbon that escapes remineralisation undergoes exchange between various active carbon reservoirs. Until now, the timescales o...

Effect of abiotic and biotic stress factors analysis using machine learning methods in zebrafish.

Science.gov (United States)

Gutha, Rajasekar; Yarrappagaari, Suresh; Thopireddy, Lavanya; Reddy, Kesireddy Sathyavelu; Saddala, Rajeswara Reddy

2018-03-01

In order to understand the mechanisms underlying stress responses, meta-analysis of transcriptome is made to identify differentially expressed genes (DEGs) and their biological, molecular and cellular mechanisms in response to stressors. The present study is aimed at identifying the effect of abiotic and biotic stress factors, and it is found that several stress responsive genes are common for both abiotic and biotic stress factors in zebrafish. The meta-analysis of micro-array studies revealed that almost 4.7% i.e., 108 common DEGs are differentially regulated between abiotic and biotic stresses. This shows that there is a global coordination and fine-tuning of gene regulation in response to these two types of challenges. We also performed dimension reduction methods, principal component analysis, and partial least squares discriminant analysis which are able to segregate abiotic and biotic stresses into separate entities. The supervised machine learning model, recursive-support vector machine, could classify abiotic and biotic stresses with 100% accuracy using a subset of DEGs. Beside these methods, the random forests decision tree model classified five out of 8 stress conditions with high accuracy. Finally, Functional enrichment analysis revealed the different gene ontology terms, transcription factors and miRNAs factors in the regulation of stress responses. Copyright © 2017 Elsevier Inc. All rights reserved.

Relating microbial community structure to functioning in forest soil organic carbon transformation and turnover.

Science.gov (United States)

You, Yeming; Wang, Juan; Huang, Xueman; Tang, Zuoxin; Liu, Shirong; Sun, Osbert J

2014-03-01

Forest soils store vast amounts of terrestrial carbon, but we are still limited in mechanistic understanding on how soil organic carbon (SOC) stabilization or turnover is controlled by biotic and abiotic factors in forest ecosystems. We used phospholipid fatty acids (PLFAs) as biomarker to study soil microbial community structure and measured activities of five extracellular enzymes involved in the degradation of cellulose (i.e., β-1,4-glucosidase and cellobiohydrolase), chitin (i.e., β-1,4-N-acetylglucosaminidase), and lignin (i.e., phenol oxidase and peroxidase) as indicators of soil microbial functioning in carbon transformation or turnover across varying biotic and abiotic conditions in a typical temperate forest ecosystem in central China. Redundancy analysis (RDA) was performed to determine the interrelationship between individual PFLAs and biotic and abiotic site factors as well as the linkage between soil microbial structure and function. Path analysis was further conducted to examine the controls of site factors on soil microbial community structure and the regulatory pathway of changes in SOC relating to microbial community structure and function. We found that soil microbial community structure is strongly influenced by water, temperature, SOC, fine root mass, clay content, and C/N ratio in soils and that the relative abundance of Gram-negative bacteria, saprophytic fungi, and actinomycetes explained most of the variations in the specific activities of soil enzymes involved in SOC transformation or turnover. The abundance of soil bacterial communities is strongly linked with the extracellular enzymes involved in carbon transformation, whereas the abundance of saprophytic fungi is associated with activities of extracellular enzymes driving carbon oxidation. Findings in this study demonstrate the complex interactions and linkage among plant traits, microenvironment, and soil physiochemical properties in affecting SOC via microbial regulations.

Reciprocal subsidies and food web pathways leading to chum salmon fry in a temperate marine-terrestrial ecotone.

Science.gov (United States)

Romanuk, Tamara N; Levings, Colin D

2010-04-08

Stable isotope analysis was used to determine the relative proportions of terrestrial and marine subsidies of carbon to invertebrates along a tidal gradient (low-intertidal, mid-intertidal, high-intertidal, supralittoral) and to determine the relative importance of terrestrial carbon in food web pathways leading to chum salmon fry Oncorhynchus keta (Walbaum) in Howe Sound, British Columbia. We found a clear gradient in the proportion of terrestrially derived carbon along the tidal gradient ranging from 68% across all invertebrate taxa in the supralittoral to 25% in the high-intertidal, 20% in the mid-intertidal, and 12% in the low-intertidal. Stable isotope values of chum salmon fry indicated carbon contributions from both terrestrial and marine sources, with terrestrially derived carbon ranging from 12.8 to 61.5% in the muscle tissue of chum salmon fry (mean 30%). Our results provide evidence for reciprocal subsidies of marine and terrestrially derived carbon on beaches in the estuary and suggest that the vegetated supralittoral is an important trophic link in supplying terrestrial carbon to nearshore food webs.

Genetic diversity and temporal variation of the marine Synechococcus community in the subtropical coastal waters of Hong Kong.

Science.gov (United States)

Jing, Hongmei; Zhang, Rui; Pointing, Stephen B; Liu, Hongbin; Qian, Peiyuan

2009-03-01

The phylogenetic diversity of the marine Synechococcus community in the subtropical coastal waters of Hong Kong, China, was examined through intergenic transcribed spacer clone libraries. All the sequences obtained fell within both marine cluster A (MC-A) and B (MC-B), with MC-A phylotypes dominating throughout the year. Distinct phylogenetic lineages specific to Hong Kong waters were detected from both MC-A and MC-B. The highest Synechococcus community diversity occurred in December, but the highest Synechococcus abundance occurred in August. On the other hand, both the abundance and diversity of Synechococcus showed a minimum in February. The remarkable seasonal variations of Synechococcus diversity observed were likely the result of the changes of hydrographic condition modulated by monsoons. Principal component analysis revealed that the in situ abiotic water characteristics, especially salinity and water turbidity, explained much of the variability of the marine Synechococcus population diversity in Hong Kong coastal waters. In addition, the temporal changes of Synechococcus abundance were largely driven by water temperature.

Chitin Degradation In Marine Bacteria

DEFF Research Database (Denmark)

Paulsen, Sara; Machado, Henrique; Gram, Lone

2015-01-01

Introduction: Chitin is the most abundant polymer in the marine environment and the second most abundant in nature. Chitin does not accumulate on the ocean floor, because of microbial breakdown. Chitin degrading bacteria could have potential in the utilization of chitin as a renewable carbon...... and nitrogen source in the fermentation industry.Methods: Here, whole genome sequenced marine bacteria were screened for chitin degradation using phenotypic and in silico analyses.Results: The in silico analyses revealed the presence of three to nine chitinases in each strain, however the number of chitinases...... chitin regulatory system.Conclusions: This study has provided insight into the ecology of chitin degradation in marine bacteria. It also served as a basis for choosing a more efficient chitin degrading production strain e.g. for the use of chitin waste for large-scale fermentations....

Radiocarbon in marine dissolved organic carbon (DOC)

NARCIS (Netherlands)

Clercq, M. le; Plicht, J. van der; Meijer, H.A.J.; Baar, H.J.W. de

Dissolved Organic Carbon (DOC) plays an important role in the ecology and carbon cycle in the ocean. Analytical problems with concentration and isotope ratio measurements have hindered its study. We have constructed a new analytical method based on supercritical oxidation for the determination of

Cross-tolerance to biotic and abiotic stresses in plants: a focus on resistance to aphid infestation.

Science.gov (United States)

Foyer, Christine H; Rasool, Brwa; Davey, Jack W; Hancock, Robert D

2016-03-01

Plants co-evolved with an enormous variety of microbial pathogens and insect herbivores under daily and seasonal variations in abiotic environmental conditions. Hence, plant cells display a high capacity to respond to diverse stresses through a flexible and finely balanced response network that involves components such as reduction-oxidation (redox) signalling pathways, stress hormones and growth regulators, as well as calcium and protein kinase cascades. Biotic and abiotic stress responses use common signals, pathways and triggers leading to cross-tolerance phenomena, whereby exposure to one type of stress can activate plant responses that facilitate tolerance to several different types of stress. While the acclimation mechanisms and adaptive responses that facilitate responses to single biotic and abiotic stresses have been extensively characterized, relatively little information is available on the dynamic aspects of combined biotic/abiotic stress response. In this review, we consider how the abiotic environment influences plant responses to attack by phloem-feeding aphids. Unravelling the signalling cascades that underpin cross-tolerance to biotic and abiotic stresses will allow the identification of new targets for increasing environmental resilience in crops. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Evaluation of Abiotic Resource LCIA Methods

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Rodrigo A. F. Alvarenga

2016-02-01

Full Text Available In a life cycle assessment (LCA, the impacts on resources are evaluated at the area of protection (AoP with the same name, through life cycle impact assessment (LCIA methods. There are different LCIA methods available in literature that assesses abiotic resources, and the goal of this study was to propose recommendations for that impact category. We evaluated 19 different LCIA methods, through two criteria (scientific robustness and scope, divided into three assessment levels, i.e., resource accounting methods (RAM, midpoint, and endpoint. In order to support the assessment, we applied some LCIA methods to a case study of ethylene production. For RAM, the most suitable LCIA method was CEENE (Cumulative Exergy Extraction from the Natural Environment (but SED (Solar Energy Demand and ICEC (Industrial Cumulative Exergy Consumption/ECEC (Ecological Cumulative Exergy Consumption may also be recommended, while the midpoint level was ADP (Abiotic Depletion Potential, and the endpoint level was both the Recipe Endpoint and EPS2000 (Environmental Priority Strategies. We could notice that the assessment for the AoP Resources is not yet well established in the LCA community, since new LCIA methods (with different approaches and assessment frameworks are showing up, and this trend may continue in the future.

The Role of Tomato WRKY Genes in Plant Responses to Combined Abiotic and Biotic Stresses

Directory of Open Access Journals (Sweden)

Yuling Bai

2018-06-01

Full Text Available In the field, plants constantly face a plethora of abiotic and biotic stresses that can impart detrimental effects on plants. In response to multiple stresses, plants can rapidly reprogram their transcriptome through a tightly regulated and highly dynamic regulatory network where WRKY transcription factors can act as activators or repressors. WRKY transcription factors have diverse biological functions in plants, but most notably are key players in plant responses to biotic and abiotic stresses. In tomato there are 83 WRKY genes identified. Here we review recent progress on functions of these tomato WRKY genes and their homologs in other plant species, such as Arabidopsis and rice, with a special focus on their involvement in responses to abiotic and biotic stresses. In particular, we highlight WRKY genes that play a role in plant responses to a combination of abiotic and biotic stresses.

Marine viruses and global climate change

NARCIS (Netherlands)

Danovaro, R.; Corinaldesi, C.; Dell'Anno, A.; Fuhrman, J.A.; Middelburg, J.J.; Noble, R.T.; Suttle, C.A.

2011-01-01

Sea-surface warming, sea-ice melting and related freshening, changes in circulation and mixing regimes, and ocean acidification induced by the present climate changes are modifying marine ecosystem structure and function and have the potential to alter the cycling of carbon and nutrients in surface

Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics.

Science.gov (United States)

Mizuno, Carolina Megumi; Rodriguez-Valera, Francisco; Ghai, Rohit

2015-02-10

The genomes of four novel marine Actinobacteria have been assembled from large metagenomic data sets derived from the Mediterranean deep chlorophyll maximum (DCM). These are the first marine representatives belonging to the order Acidimicrobiales and only the second group of planktonic marine Actinobacteria to be described. Their streamlined genomes and photoheterotrophic lifestyle suggest that they are planktonic, free-living microbes. A novel rhodopsin clade, acidirhodopsins, related to freshwater actinorhodopsins, was found in these organisms. Their genomes suggest a capacity to assimilate C2 compounds, some using the glyoxylate bypass and others with the ethylmalonyl-coenzyme A (CoA) pathway. They are also able to derive energy from dimethylsulfopropionate (DMSP), sulfonate, and carbon monoxide oxidation, all commonly available in the marine habitat. These organisms appear to be prevalent in the deep photic zone at or around the DCM. The presence of sister clades to the marine Acidimicrobiales in freshwater aquatic habitats provides a new example of marine-freshwater transitions with potential evolutionary insights. Despite several studies showing the importance and abundance of planktonic Actinobacteria in the marine habitat, a representative genome was only recently described. In order to expand the genomic repertoire of marine Actinobacteria, we describe here the first Acidimicrobidae genomes of marine origin and provide insights about their ecology. They display metabolic versatility in the acquisition of carbon and appear capable of utilizing diverse sources of energy. One of the genomes harbors a new kind of rhodopsin related to the actinorhodopsin clade of freshwater origin that is widespread in the oceans. Our data also support their preference to inhabit the deep chlorophyll maximum and the deep photic zone. This work contributes to the perception of marine actinobacterial groups as important players in the marine environment with distinct and

Why is the South Orkney Island shelf (the world's first high seas marine protected area) a carbon immobilization hotspot?

Science.gov (United States)

Barnes, David K A; Ireland, Louise; Hogg, Oliver T; Morley, Simon; Enderlein, Peter; Sands, Chester J

2016-03-01

The Southern Ocean archipelago, the South Orkney Islands (SOI), became the world's first entirely high seas marine protected area (MPA) in 2010. The SOI continental shelf (~44 000 km(2) ), was less than half covered by grounded ice sheet during glaciations, is biologically rich and a key area of both sea surface warming and sea-ice losses. Little was known of the carbon cycle there, but recent work showed it was a very important site of carbon immobilization (net annual carbon accumulation) by benthos, one of the few demonstrable negative feedbacks to climate change. Carbon immobilization by SOI bryozoans was higher, per species, unit area and ice-free day, than anywhere-else polar. Here, we investigate why carbon immobilization has been so high at SOI, and whether this is due to high density, longevity or high annual production in six study species of bryozoans (benthic suspension feeders). We compared benthic carbon immobilization across major regions around West Antarctica with sea-ice and primary production, from remotely sensed and directly sampled sources. Lowest carbon immobilization was at the northernmost study regions (South Georgia) and southernmost Amundsen Sea. However, data standardized for age and density showed that only SOI was anomalous (high). High immobilization at SOI was due to very high annual production of bryozoans (rather than high densities or longevity), which were 2x, 3x and 5x higher than on the Bellingshausen, South Georgia and Amundsen shelves, respectively. We found that carbon immobilization correlated to the duration (but not peak or integrated biomass) of phytoplankton blooms, both in directly sampled, local scale data and across regions using remote-sensed data. The long bloom at SOI seems to drive considerable carbon immobilization, but sea-ice losses across West Antarctica mean that significant carbon sinks and negative feedbacks to climate change could also develop in the Bellingshausen and Amundsen seas. © 2015 John Wiley

Arbuscular mycorrhizal fungal responses to abiotic stresses: A review.

Science.gov (United States)

Lenoir, Ingrid; Fontaine, Joël; Lounès-Hadj Sahraoui, Anissa

2016-03-01

The majority of plants live in close collaboration with a diversity of soil organisms among which arbuscular mycorrhizal fungi (AMF) play an essential role. Mycorrhizal symbioses contribute to plant growth and plant protection against various environmental stresses. Whereas the resistance mechanisms induced in mycorrhizal plants after exposure to abiotic stresses, such as drought, salinity and pollution, are well documented, the knowledge about the stress tolerance mechanisms implemented by the AMF themselves is limited. This review provides an overview of the impacts of various abiotic stresses (pollution, salinity, drought, extreme temperatures, CO2, calcareous, acidity) on biodiversity, abundance and development of AMF and examines the morphological, biochemical and molecular mechanisms implemented by AMF to survive in the presence of these stresses. Copyright © 2016 Elsevier Ltd. All rights reserved.

Relationships between biotic and abiotic factors and regeneration of chestnut oak, white oak, and northern red oak

Science.gov (United States)

Songlin Fei; Kim C. Steiner; James C. Finley; Marc E. McDill

2003-01-01

A series of substantial field surveys of 38 mixed-oak stands in central Pennsylvania were carried out during 1996-2000. All the stands were surveyed 1 year prior to harvest, and 16 stands have been surveyed 1 year after harvest. Three abiotic factors at stand scale, four abiotic factors at plot scale, and two biotic factors and one abiotic factor at subplot scale was...

Abiotic stress responses in plants: roles of calmodulin-regulated proteins

Science.gov (United States)

Virdi, Amardeep S.; Singh, Supreet; Singh, Prabhjeet

2015-01-01

Intracellular changes in calcium ions (Ca2+) in response to different biotic and abiotic stimuli are detected by various sensor proteins in the plant cell. Calmodulin (CaM) is one of the most extensively studied Ca2+-sensing proteins and has been shown to be involved in transduction of Ca2+ signals. After interacting with Ca2+, CaM undergoes conformational change and influences the activities of a diverse range of CaM-binding proteins. A number of CaM-binding proteins have also been implicated in stress responses in plants, highlighting the central role played by CaM in adaptation to adverse environmental conditions. Stress adaptation in plants is a highly complex and multigenic response. Identification and characterization of CaM-modulated proteins in relation to different abiotic stresses could, therefore, prove to be essential for a deeper understanding of the molecular mechanisms involved in abiotic stress tolerance in plants. Various studies have revealed involvement of CaM in regulation of metal ions uptake, generation of reactive oxygen species and modulation of transcription factors such as CAMTA3, GTL1, and WRKY39. Activities of several kinases and phosphatases have also been shown to be modulated by CaM, thus providing further versatility to stress-associated signal transduction pathways. The results obtained from contemporary studies are consistent with the proposed role of CaM as an integrator of different stress signaling pathways, which allows plants to maintain homeostasis between different cellular processes. In this review, we have attempted to present the current state of understanding of the role of CaM in modulating different stress-regulated proteins and its implications in augmenting abiotic stress tolerance in plants. PMID:26528296

The K-PG boundary: how geological events lead to collapse of marine primary producers

Science.gov (United States)

Hir guillaume, Le; frederic, Fluteau; yves, Goddéris

2017-04-01

The cause(s) of Cretaceous/Paleogene (K-Pg) mass extinction event is a matter of debate since three decades. A first scenario connects the K-Pg crisis with the Chicxulub impact while the second scenario evokes the emplacement of the Deccan traps in India as the cause for the K-Pg biodiversity collapse. Pierazzo et al. (1998) estimated that the extraterrestrial bolide lead to an instantaneously CO2 degassing ranging from 880 Gt to 2,960 Gt into the atmosphere, together with a massive release of SO2 ranging from 150 to 460 Gt.. Self et al. (2006, 2008) and Chenet et al. (2009) suggested that the emplacement of the Deccan traps released 15,000 Gt to 35,000 Gt of CO2 and 6,800 Gt to 17,000 Gt of SO2 over a 250 kyr-long period (Schoene et al., 2015). To decipher and quantify the long term environmental consequences of both events, we tested different scenarios: a pulse-like magmatic degassing, a bolide impact, and a combination of both. To understand the environmental changes and quantify biodiversity responses, we improve GEOCLIM, a coupled climate-carbon numerical model, by implementing a biodiversity model in which marine species are described by specific death/born rates, sensitivity to abiotic factors (temperature, pH, dissolved O2, calcite saturation state) and feeding relationships, each of these characteristics is assigned randomly. Preliminary simulations accounting for the eruption of the Deccan traps show that successive cooling events (S-aerosols effect) combined with a progressive acidification of surface water (caused by CO2 and SO2 injections) cause a major collapse of the marine biomass. Additional simulations in which Chicxulub impact, different community structures of primary producers will be discussed.

Seasonal variation of marine organic aerosols in the North Pacific Ocean

Science.gov (United States)

Fu, P.; Kawamura, K.

2017-12-01

Atmospheric aerosols were collected in the marine boundary layer during five marine cruises in the northern Pacific Ocean from October 1996 to July 1997. Organic molecular compositions of the marine aerosols were measured using gas chromatography/mass spectrometry (GC/MS). Higher concentrations of levoglucosan and its isomers, the biomass-burning tracers, were observed in the coastal regions than those in the central north Pacific. Seasonal trends of biomass burning tracers were found to be higher in fall-winter-spring than in summer, suggesting an enhanced influence of continental aerosols to the marine atmosphere during cold seasons when the westerlies prevail. However, the atmospheric levels of secondary organic aerosol (SOA) tracers from the photooxidation of isoprene and monoterpenes were higher in warm seasons than cold seasons, which are in accordance with the enhanced emissions of biogenic volatile organic compounds (BVOCs) in summer. Stable C isotope ratios of total carbon (δ13CTC) in the marine aerosols ranged from -28.5‰ to -23.6‰ (mean -26.4‰), suggesting an important input of terrestrial/continental aerosol particles. Stable N isotope ratios (2.6‰ to 12.9‰, mean 7.1‰) were found to be higher in the coastal regions than those in the open oceans, suggesting an enhanced emission of marine aerosols in the open oceans. The fluorescence properties of the water-soluble organic carbon (WSOC) in the marine aerosols conform the importance of marine emitted organics in the open ocean, especially during the high biological activity periods.

The Role of MAPK Modules and ABA during Abiotic Stress Signaling

KAUST Repository

Zélicourt, Axel de

2016-05-01

To respond to abiotic stresses, plants have developed specific mechanisms that allow them to rapidly perceive and respond to environmental changes. The phytohormone abscisic acid (ABA) was shown to be a pivotal regulator of abiotic stress responses in plants, triggering major changes in plant physiology. The ABA core signaling pathway largely relies on the activation of SnRK2 kinases to mediate several rapid responses, including gene regulation, stomatal closure, and plant growth modulation. Mitogen-activated protein kinases (MAPKs) have also been implicated in ABA signaling, but an entire ABA-activated MAPK module was uncovered only recently. In this review, we discuss the evidence for a role of MAPK modules in the context of different plant ABA signaling pathways. Abiotic stresses impact average yield in agriculture by more than 50% globally.Since ABA is a key regulator of abiotic stress responses, an understanding of its functioning at the molecular level is essential for plant breeding. Although the ABA core signaling pathway has been unraveled, several downstream events are still unclear.MAPKs are involved in most plant developmental stages and in response to stresses. Several members of the MAPK family were shown to be directly or indirectly activated by the ABA core signaling pathway.Recent evidence shows that the complete MAP3K17/18-MKK3-MPK1/2/7/14 module is under the control of ABA, whose members are under the transcriptional and post-translational control of the ABA core signaling pathway. © 2016 Elsevier Ltd.

Combined oxygen- and carbon-isotope records through the Early Jurassic: multiple global events and two modes of carbon-cycle/temperature coupling

DEFF Research Database (Denmark)

Hesselbo, Stephen P.; Korte, Christoph

2010-01-01

, to the extent that meaningful comparisons between these events can begin to be made. Here we present new carbon and oxygen isotope data from mollusks (bivalves and belemnites) and brachiopods collected through the marine Early Jurassic succession of NE England, including the Sinemurian-Plienbachian boundary...... GSSP. All materials have been screened by chemical analysis and scanning electron microscopy to check for diagenetic alteration. Analysis of carbon isotopes from marine calcite is supplemented by analysis of carbon-isotope values from fossil wood collected through the same section. It is demonstrated...... that both long-term and short-term carbon-isotope shifts from the UK Early Jurassic represent global changes in carbon cycle balances. The Sinemurian-Pliensbachian boundary event is an event of global significance and shows several similarities to the Toarcian OAE (relative sea-level change, carbon-isotope...

Flourishing ocean drives the end-Permian marine mass extinction.

Science.gov (United States)

Schobben, Martin; Stebbins, Alan; Ghaderi, Abbas; Strauss, Harald; Korn, Dieter; Korte, Christoph

2015-08-18

The end-Permian mass extinction, the most severe biotic crisis in the Phanerozoic, was accompanied by climate change and expansion of oceanic anoxic zones. The partitioning of sulfur among different exogenic reservoirs by biological and physical processes was of importance for this biodiversity crisis, but the exact role of bioessential sulfur in the mass extinction is still unclear. Here we show that globally increased production of organic matter affected the seawater sulfate sulfur and oxygen isotope signature that has been recorded in carbonate rock spanning the Permian-Triassic boundary. A bifurcating temporal trend is observed for the strata spanning the marine mass extinction with carbonate-associated sulfate sulfur and oxygen isotope excursions toward decreased and increased values, respectively. By coupling these results to a box model, we show that increased marine productivity and successive enhanced microbial sulfate reduction is the most likely scenario to explain these temporal trends. The new data demonstrate that worldwide expansion of euxinic and anoxic zones are symptoms of increased biological carbon recycling in the marine realm initiated by global warming. The spatial distribution of sulfidic water column conditions in shallow seafloor environments is dictated by the severity and geographic patterns of nutrient fluxes and serves as an adequate model to explain the scale of the marine biodiversity crisis. Our results provide evidence that the major biodiversity crises in Earth's history do not necessarily implicate an ocean stripped of (most) life but rather the demise of certain eukaryotic organisms, leading to a decline in species richness.

Electrode impedance analysis of chronic tungsten microwire neural implants: understanding abiotic vs. biotic contributions

Directory of Open Access Journals (Sweden)

Viswanath eSankar

2014-05-01

Full Text Available Changes in biotic and abiotic factors can be reflected in the complex impedance spectrum of the microelectrodes chronically implanted into the neural tissue. The recording surface of the tungsten electrode in vivo undergoes abiotic changes due to recording site corrosion and insulation delamination as well as biotic changes due to tissue encapsulation as a result of the foreign body immune response. We reported earlier that large changes in electrode impedance measured at 1 kHz were correlated with poor electrode functional performance, quantified through electrophysiological recordings during the chronic lifetime of the electrode. There is a need to identity the factors that contribute to the chronic impedance variation. In this work, we use numerical simulation and regression to equivalent circuit models to evaluate both the abiotic and biotic contributions to the impedance response over chronic implant duration. COMSOL® simulation of abiotic electrode morphology changes provide a possible explanation for the decrease in the electrode impedance at long implant duration while biotic changes play an important role in the large increase in impedance observed initially.

Importance of biotic and abiotic components in feedback between plants and soil

OpenAIRE

Hanzelková, Věra

2017-01-01

The plant-soil feedback affects the forming of a plant community. Plants affect their own species as well as other species. The plant-soil feedback can be both positive and negative. Plants affect soil, change its properties, and the soil affects the plants reciprocally. Soil components can be divided into biotic and abiotic ones. The abiotic component is represented by physical and chemical properties of the soil. The main properties are the soil structure, the soil moisture, the soil temper...

Carbon budget of a marine phytoplankton-herbivore system with carbon-14 as a tracer

International Nuclear Information System (INIS)

Copping, A.E.; Lorenzen, C.J.

1980-01-01

Adult female and stage V Calanus pacificus were fed 14 C-labeled phytoplankton in the laboratory in the form of monospecific cultures and natural populations. A carbon budget was constructed by following the 14 C activity and the specific activity, over 48 h, in the phytoplankton, copepod, dissolved organic, dissolved inorganic, and fecal carbon compartments. The average incorporation of carbon into the copepod's body was 45% of the phytoplankton carbon available. Of the phytoplankton carbon, 27% appeared as dissolved organic carbon, 24% as dissolved inorganic carbon, and 3 to 4% in the form of fecal pellets. All of the tracer was recovered at the end of the experiments. The specific activity of the phytoplankton compartment was constant throughout each experiment. The other compartments had initial specific activities of zero, or close to zero, and increased throughout the experiment. In most experiments, the copepod specific activity equalled that of the phytoplankton at the end of 48 h, while the dissolved organic carbon, dissolved inorganic carbon, and fecal specific activities remained well below that of the phytoplankton

Radiometric dating of marine-influenced coal using Re–Os geochronology

Science.gov (United States)

Tripathy, Gyana Ranjan; Hannah, Judith L.; Stein, Holly J.; Geboy, Nicholas J.; Ruppert, Leslie F.

2016-01-01

Coal deposits are integral to understanding the structural evolution and thermal history of sedimentary basins and correlating contemporeous estuarine and fluvial delatic strata with marine sections. While marine shales may readily lend themselves to Re–Os dating due to the dominance of hydrogenous Re and Os, the lack of a chronometer for near-shore sedimentary environments hampers basinwide correlations in absolute time. Here, we employ the Re–Os geochronometer, along with total organic carbon (TOC) and Rock–Eval data, to determine the timing and conditions of a marine incursion at the top of the Matewan coal bed, Kanawha Formation, Pottsville Group, West Virginia, USA. The observed range for hydrogen index (HI: 267–290 mg hydrocarbon/gram total organic carbon) for these coal samples suggests dominance of aliphatic hydrocarbons with low carbon (marine-influenced Matewan coal are higher by few orders of magnitude than published data for terrestrial coal. A Re–Os isochron for the Matewan coal provides an age of 325±14 Ma (Model 3; MSWD = 12; n=19; 2σ ). This is the first Re–Os age derived from coal samples; the age overlaps a new composite Re–Os age of 317±2 Ma for the immediately overlying Betsie Shale Member.

Pre-mRNA splicing repression triggers abiotic stress signaling in plants

KAUST Repository

Ling, Yu

2016-09-24

Alternative splicing (AS) of precursor RNAs enhances transcriptome plasticity and proteome diversity in response to diverse growth and stress cues. Recent work has shown that AS is pervasive across plant species, with more than 60% of intron-containing genes producing different isoforms. Mammalian cell-based assays have discovered various inhibitors of AS. Here, we show that the macrolide pladienolide B (PB) inhibits constitutive splicing and AS in plants. Also, our RNA sequencing (RNA-seq) data revealed that PB mimics abiotic stress signals including salt, drought and abscisic acid (ABA). PB activates the abiotic stress- and ABA-responsive reporters RD29A

Pre-mRNA splicing repression triggers abiotic stress signaling in plants

KAUST Repository

Ling, Yu; Alshareef, Sahar; Butt, Haroon; Lozano-Juste, Jorge; Li, Lixin; Galal, Aya A.; Moustafa, Ahmed; Momin, Afaque Ahmad Imtiyaz; Tashkandi, Manal; Richardson, Dale N.; Fujii, Hiroaki; Arold, Stefan T.; Rodriguez, Pedro L.; Duque, Paula; Mahfouz, Magdy M.

2016-01-01

Alternative splicing (AS) of precursor RNAs enhances transcriptome plasticity and proteome diversity in response to diverse growth and stress cues. Recent work has shown that AS is pervasive across plant species, with more than 60% of intron-containing genes producing different isoforms. Mammalian cell-based assays have discovered various inhibitors of AS. Here, we show that the macrolide pladienolide B (PB) inhibits constitutive splicing and AS in plants. Also, our RNA sequencing (RNA-seq) data revealed that PB mimics abiotic stress signals including salt, drought and abscisic acid (ABA). PB activates the abiotic stress- and ABA-responsive reporters RD29A

Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source.

Science.gov (United States)

Antoniou, Eleftheria; Fodelianakis, Stilianos; Korkakaki, Emmanouela; Kalogerakis, Nicolas

2015-01-01

Biosurfactants (BSs) are "green" amphiphilic molecules produced by microorganisms during biodegradation, increasing the bioavailability of organic pollutants. In this work, the BS production yield of marine hydrocarbon degraders isolated from Elefsina bay in Eastern Mediterranean Sea has been investigated. The drop collapse test was used as a preliminary screening test to confirm BS producing strains or mixed consortia. The community structure of the best consortia based on the drop collapse test was determined by 16S-rDNA pyrotag screening. Subsequently, the effect of incubation time, temperature, substrate and supplementation with inorganic nutrients, on BS production, was examined. Two types of BS - lipid mixtures were extracted from the culture broth; the low molecular weight BS Rhamnolipids and Sophorolipids. Crude extracts were purified by silica gel column chromatography and then identified by thin layer chromatography and Fourier transform infrared spectroscopy. Results indicate that BS production yield remains constant and low while it is independent of the total culture biomass, carbon source, and temperature. A constant BS concentration in a culture broth with continuous degradation of crude oil (CO) implies that the BS producing microbes generate no more than the required amount of BSs that enables biodegradation of the CO. Isolated pure strains were found to have higher specific production yields than the complex microbial marine community-consortia. The heavy oil fraction of CO has emerged as a promising substrate for BS production (by marine BS producers) with fewer impurities in the final product. Furthermore, a particular strain isolated from sediments, Paracoccus marcusii, may be an optimal choice for bioremediation purposes as its biomass remains trapped in the hydrocarbon phase, not suffering from potential dilution effects by sea currents.

Application of coupled ocean-atmospheric RTM SCIATRAN to retrieve chlorophyll and CDOM fluorescence from space: first results

OpenAIRE

Wolanin, Aleksandra; Dinter, Tilman; Rozanov, V.; Bracher, Astrid

2012-01-01

Colored dissolved organic matter (CDOM) is the main abiotic photoreactive constituent in marine waters. It strongly absorbs light in UV and blue region of light spectrum, reducing potentially harmful UV radiation, but also - when abundant - limiting the amount of light available for photosynthesis. DOM is a significant element in the carbon cycle and thus its optical properties have been studied extensively to estimate CDOM concentration and characterize its chemical composition. It has...

Induction of abiotic stress tolerance in plants by endophytic microbes.

Science.gov (United States)

Lata, R; Chowdhury, S; Gond, S K; White, J F

2018-04-01

Endophytes are micro-organisms including bacteria and fungi that survive within healthy plant tissues and promote plant growth under stress. This review focuses on the potential of endophytic microbes that induce abiotic stress tolerance in plants. How endophytes promote plant growth under stressful conditions, like drought and heat, high salinity and poor nutrient availability will be discussed. The molecular mechanisms for increasing stress tolerance in plants by endophytes include induction of plant stress genes as well as biomolecules like reactive oxygen species scavengers. This review may help in the development of biotechnological applications of endophytic microbes in plant growth promotion and crop improvement under abiotic stress conditions. Increasing human populations demand more crop yield for food security while crop production is adversely affected by abiotic stresses like drought, salinity and high temperature. Development of stress tolerance in plants is a strategy to cope with the negative effects of adverse environmental conditions. Endophytes are well recognized for plant growth promotion and production of natural compounds. The property of endophytes to induce stress tolerance in plants can be applied to increase crop yields. With this review, we intend to promote application of endophytes in biotechnology and genetic engineering for the development of stress-tolerant plants. © 2018 The Society for Applied Microbiology.

Abiotic transformation of estrogens in synthetic municipal wastewater: An alternative for treatment?

Energy Technology Data Exchange (ETDEWEB)

Marfil-Vega, Ruth [School of Energy, Environmental, Biological and Medical Engineering, University of Cincinnati, 701 Engineering Research Center, Cincinnati, OH 45221-0071 (United States); Suidan, Makram T., E-mail: Makram.Suidan@uc.ed [School of Energy, Environmental, Biological and Medical Engineering, University of Cincinnati, 701 Engineering Research Center, Cincinnati, OH 45221-0071 (United States); Mills, Marc A. [USEPA, Office of Research and Development, National Risk Management Research Laboratory, Cincinnati, OH 45268 (United States)

2010-11-15

The abiotic transformation of estrogens, including estrone (E1), estradiol (E2), estriol (E3) and ethinylestradiol (EE2), in the presence of model vegetable matter was confirmed in this study. Batch experiments were performed to model the catalytic conversion of E1, E2, E3 and EE2 in synthetic wastewater. Greater than 80% reduction in the parent compounds was achieved for each target chemical after 72 h with the remaining concentration distributed between aqueous and solid phases as follows: 13% and 7% for E1, 10% and 2% for E2, 6% and 2% for E3, and 8% and 3% for EE2, respectively. Testosterone, androstenedione and progesterone were also monitored in this study, and their concentrations were found to be in agreement with initially spiked amount. Data collected under laboratory conditions provided the basis for implementing new abiotic wastewater treatment technologies that use inexpensive materials. - Abiotic transformation of estrogens in wastewater matrices can be harnessed for improving their removal from the environment.

Abiotic transformation of estrogens in synthetic municipal wastewater: An alternative for treatment?

International Nuclear Information System (INIS)

Marfil-Vega, Ruth; Suidan, Makram T.; Mills, Marc A.

2010-01-01

The abiotic transformation of estrogens, including estrone (E1), estradiol (E2), estriol (E3) and ethinylestradiol (EE2), in the presence of model vegetable matter was confirmed in this study. Batch experiments were performed to model the catalytic conversion of E1, E2, E3 and EE2 in synthetic wastewater. Greater than 80% reduction in the parent compounds was achieved for each target chemical after 72 h with the remaining concentration distributed between aqueous and solid phases as follows: 13% and 7% for E1, 10% and 2% for E2, 6% and 2% for E3, and 8% and 3% for EE2, respectively. Testosterone, androstenedione and progesterone were also monitored in this study, and their concentrations were found to be in agreement with initially spiked amount. Data collected under laboratory conditions provided the basis for implementing new abiotic wastewater treatment technologies that use inexpensive materials. - Abiotic transformation of estrogens in wastewater matrices can be harnessed for improving their removal from the environment.

Cortex proliferation in the root is a protective mechanism against abiotic stress.

Science.gov (United States)

Cui, Hongchang

2015-01-01

Although as an organ the root plays a pivotal role in nutrient and water uptake as well anchorage, individual cell types function distinctly. Cortex is regarded as the least differentiated cell type in the root, but little is known about its role in plant growth and physiology. In recent studies, we found that cortex proliferation can be induced by oxidative stress. Since all types of abiotic stress lead to oxidative stress, this finding suggests a role for cortex in coping with abiotic stress. This hypothesis was tested in this study using the spy mutant, which has an extra layer of cortex in the root. Interestingly, the spy mutant was shown to be hypersensitive to salt and oxidizing reagent applied to the leaves, but it was as tolerant as the wild type to these compounds in the soil. This result lends support to the notion that cortex has a protective role against abiotic stress arising from the soil.

A marine heatwave drives massive losses from the world’s largest seagrass carbon stocks

KAUST Repository

Arias-Ortiz, A.

2018-03-29

Seagrass ecosystems contain globally significant organic carbon (C) stocks. However, climate change and increasing frequency of extreme events threaten their preservation. Shark Bay, Western Australia, has the largest C stock reported for a seagrass ecosystem, containing up to 1.3% of the total C stored within the top metre of seagrass sediments worldwide. On the basis of field studies and satellite imagery, we estimate that 36% of Shark Bay’s seagrass meadows were damaged following a marine heatwave in 2010/2011. Assuming that 10 to 50% of the seagrass sediment C stock was exposed to oxic conditions after disturbance, between 2 and 9 Tg CO could have been released to the atmosphere during the following three years, increasing emissions from land-use change in Australia by 4–21% per annum. With heatwaves predicted to increase with further climate warming, conservation of seagrass ecosystems is essential to avoid adverse feedbacks on the climate system.

Stable isotopic techniques to address marine pollution: Karachi coast as a case study

International Nuclear Information System (INIS)

Ahmad, N.; Mashiatullah, A.; Javed, T.; Chaudhary, M.Z.; Fazil, M.; Khan, M.S.; Qureshi, R.M.

2011-01-01

Seawater of the coastal regions near heavily industrialized and thickly populated urbanized centers normally receive large quantities of domestic, agricultural and industrial sewage. Ocean systems generally appear to be unlimited in their ability to dilute these human discharges and industrial wastes. This limit is now being exceeded in coastal waters in the vicinity of many large industrial and heavy populated coastal zones, causing threat to marine coastal resources of these areas. Considering the increasing threats of the unplanned inventory of untreated wastes into the marine coastal environment, the strength of isotope tools (delta/sup 13/C) is used to understand the complex ecological systems in the marine coastal environment. This technique has been applied to study transport, behavior and fate of organic pollutants in marine coastal ecosystems of Karachi coast mainly as model studies. Carbon flow in heavily contaminated harbour channel (Manora Channel) , southeast and northwest coast have been investigated. The results indicate that shallow marine coastal waters tend to be depleted in /sup 13/C (TDIC) where polluted rivers through the coastal dwellings enter and get mixed with the seawater. Gradual increase in /sup 13/C (TDIC) are observed as the distance from pollution source is increased. Extremely depleted /sup 13/C/sub org/ was observed in sediment of Layari river out fall zone and Karachi fish harbor indicating input of domestic sewage through Layari river. Studies have proved that stable carbon isotope ratios of total dissolved inorganic carbon (TDIC) can be used as an effective tracer of sewage discharge and their transport in shallow marine environment. (author)

Abscisic Acid and abiotic stress signaling.

Science.gov (United States)

Tuteja, Narendra

2007-05-01

Abiotic stress is severe environmental stress, which impairs crop production on irrigated land worldwide. Overall, the susceptibility or tolerance to the stress in plants is a coordinated action of multiple stress responsive genes, which also cross-talk with other components of stress signal transduction pathways. Plant responses to abiotic stress can be determined by the severity of the stress and by the metabolic status of the plant. Abscisic acid (ABA) is a phytohormone critical for plant growth and development and plays an important role in integrating various stress signals and controlling downstream stress responses. Plants have to adjust ABA levels constantly in responce to changing physiological and environmental conditions. To date, the mechanisms for fine-tuning of ABA levels remain elusive. The mechanisms by which plants respond to stress include both ABA-dependent and ABA-independent processes. Various transcription factors such as DREB2A/2B, AREB1, RD22BP1 and MYC/MYB are known to regulate the ABA-responsive gene expression through interacting with their corrosponding cis-acting elements such as DRE/CRT, ABRE and MYCRS/MYBRS, respectively. Understanding these mechanisms is important to improve stress tolerance in crops plants. This article first describes the general pathway for plant stress response followed by roles of ABA and transcription factors in stress tolerance including the regulation of ABA biosynthesis.

Late Permian (Zechstein) carbonate-facies maps, the Netherlands

NARCIS (Netherlands)

Geluk, M.C.

2000-01-01

The Late Permian Zechstein carbonates in the Southern Permian Basin were deposited under marine conditions. The carbonates form part of a largely progradational infill, with a gradual northward facies shift. The paleogeography of the Zechstein carbonate deposits has been reviewed recently on the

Sr isotope stratigraphy of some Rupelian carbonated laminites from the Limagne Basin: influence of seawater in the rift of the French Massif central?

International Nuclear Information System (INIS)

Briot, D.; Poidevin, J.L.

1998-01-01

87 Sr/ 86 Sr ratios of biogenic and abiotic calcites Upper Rupelian sediments in the Limagne rift (French Massif Central) define a smooth and regular negative correlation with time interrupted by repetitive sharp peaks; the progressive drop in isotopic ratio can be explained by the geological evolution of the river basin through time. Negative peaks are explained by synsedimentary volcanism, repeated marine incursions, or leaching of ancient evaporites. Comparison with available paleontologic data does not favour the volcanic explanation, but rather the influence of Rupelian marine waters. (authors)

Marine Synechococcus Aggregation

Science.gov (United States)

Neuer, S.; Deng, W.; Cruz, B. N.; Monks, L.

2016-02-01

Cyanobacteria are considered to play an important role in the oceanic biological carbon pump, especially in oligotrophic regions. But as single cells are too small to sink, their carbon export has to be mediated by aggregate formation and possible consumption by zooplankton producing sinking fecal pellets. Here we report results on the aggregation of the ubiquitous marine pico-cyanobacterium Synechococcus as a model organism. We first investigated the mechanism behind such aggregation by studying the potential role of transparent exopolymeric particles (TEP) and the effects of nutrient (nitrogen or phosphorus) limitation on the TEP production and aggregate formation of these pico-cyanobacteria. We further studied the aggregation and subsequent settling in roller tanks and investigated the effects of the clays kaolinite and bentonite in a series of concentrations. Our results show that despite of the lowered growth rates, Synechococcus in nutrient limited cultures had larger cell-normalized TEP production, formed a greater volume of aggregates, and resulted in higher settling velocities compared to results from replete cultures. In addition, we found that despite their small size and lack of natural ballasting minerals, Synechococcus cells could still form aggregates and sink at measureable velocities in seawater. Clay minerals increased the number and reduced the size of aggregates, and their ballasting effects increased the sinking velocity and carbon export potential of aggregates. In comparison with the Synechococcus, we will also present results of the aggregation of the pico-cyanobacterium Prochlorococcus in roller tanks. These results contribute to our understanding in the physiology of marine Synechococcus as well as their role in the ecology and biogeochemistry in oligotrophic oceans.

Deposition of carbon nanotubes by a marine suspension feeder revealed by chemical and isotopic tracers

Energy Technology Data Exchange (ETDEWEB)

Hanna, Shannon K., E-mail: hanna.shannonk@gmail.com [Bren School of Environmental Science and Management, University of California, Santa Barbara, CA 93106 (United States); Miller, Robert J. [Marine Science Institute, University of California, Santa Barbara, CA 93106 (United States); Lenihan, Hunter S. [Bren School of Environmental Science and Management, University of California, Santa Barbara, CA 93106 (United States)

2014-08-30

Highlights: • CNTs decrease the filtration rate of mussels by as much as 24%. • Metals in CNTs and their δ{sup 13}C can be used to quantify CNTs in biological samples. • Mussels exposed to CNTs deposit high concentrations of them in biodeposits. • CNTs accumulate mainly in gut tissue of mussels during exposure. - Abstract: Carbon nanotubes (CNTs) are one of the few truly novel nanomaterials and are being incorporated into a wide range of products, which will lead to environmental release and potential ecological impacts. We examined the toxicity of CNTs to marine mussels and the effect of mussels on CNT fate and transport by exposing mussels to 1, 2, or 3 mg CNTs l{sup −1} for four weeks and measuring mussel clearance rate, shell growth, and CNT accumulation in tissues and deposition in biodeposits. We used metal impurities and carbon stable isotope ratios of the CNTs as tracers of CNT accumulation. Mussels decreased clearance rate of phytoplankton by 24% compared with control animals when exposed to CNTs. However, mussel growth rate was unaffected by CNT concentrations up to 3 mg l{sup −1}. Based on metal concentrations and carbon stable isotope values, mussels deposited most CNTs in biodeposits, which contained >110 mg CNTs g{sup −1} dry weight, and accumulated about 1 mg CNTs g{sup −1} dry weight of tissue. We conclude that extremely high concentrations of CNTs are needed to illicit a toxic response in mussels but the ability of mussels to concentrate and deposit CNTs in feces and pseudofeces may impact infaunal organisms living in and around mussel beds.

Biological and climate controls on North Atlantic marine carbon dynamics over the last millennium: Insights from an absolutely-dated shell based record from the North Icelandic Shelf

Science.gov (United States)

Hall, I. R.; Reynolds, D.; Scourse, J. D.; Richardson, C.; Wanamaker, A. D.; Butler, P. G.

2017-12-01

Given the rapid increase in atmospheric carbon dioxide concentrations (pCO2) over the industrial era there is a pressing need to construct longterm records of natural carbon cycling prior to this perturbation and to develop a more robust understanding of the role the oceans play in the sequestration of atmospheric carbon. Here we reconstruct the historical biological and climatic controls on the carbon isotopic (δ13C-shell) composition of the North Icelandic shelf waters over the last millennium derived from the shells of the long-lived marine bivalve mollusc Arctica islandica. Variability in the annually resolved δ13C-shell record is dominated by multi-decadal variability with a negative trend (-0.003±0.002‰yr-1) over the industrial era (1800-2000). This trend is consistent with the marine Suess effect brought about by the sequestration of isotopically light carbon (δ13C of CO2) derived from the burning of fossil fuels. Comparison of the δ13C-shell record with contemporary proxy archives, over the last millennium, and instrumental data over the 20th century, suggests that primary productivity and climate conditions over the sub-polar North Atlantic region played a vital role in driving inter-annual to multi-decadal scale variability in the δ13C-shell record. Our results highlight that relative shifts in the proportion of sub-polar mode waters and Arctic intermediate waters entrained onto the North Icelandic shelf, coupled with atmospheric circulation patterns associated with the winter North Atlantic Oscillation (wNAO), are the likely physical mechanisms that drive natural variations in seawater δ13C variability on the North Icelandic shelf.

Export from Seagrass Meadows Contributes to Marine Carbon Sequestration

KAUST Repository

Duarte, Carlos M.; Krause-Jensen, Dorte

2017-01-01

Seagrasses export a substantial portion of their primary production, both in particulate and dissolved organic form, but the fate of this export production remains unaccounted for in terms of seagrass carbon sequestration. Here we review available evidence on the fate of seagrass carbon export to conclude that this represents a significant contribution to carbon sequestration, both in sediments outside seagrass meadows and in the deep sea. The evidence presented implies that the contribution of seagrass meadows to carbon sequestration has been underestimated by only including carbon burial within seagrass sediments.

Export from Seagrass Meadows Contributes to Marine Carbon Sequestration

KAUST Repository

Duarte, Carlos M.

2017-01-17

Seagrasses export a substantial portion of their primary production, both in particulate and dissolved organic form, but the fate of this export production remains unaccounted for in terms of seagrass carbon sequestration. Here we review available evidence on the fate of seagrass carbon export to conclude that this represents a significant contribution to carbon sequestration, both in sediments outside seagrass meadows and in the deep sea. The evidence presented implies that the contribution of seagrass meadows to carbon sequestration has been underestimated by only including carbon burial within seagrass sediments.

Abiotic factors drives floristic variations of fern’s metacommunity in an Atlantic Forest remnant

Directory of Open Access Journals (Sweden)

L. E. N. Costa

2018-02-01

Full Text Available Abstract We analyzed floristic variations in fern’s metacommunity at the local scale and their relationship with abiotic factors in an Atlantic Forest remnant of northeastern Brazil. Floristic and environmental variations were accessed on ten plots of 10 × 20 m. We performed cluster analyses, based on Bray-Curtis dissimilarity index to establish the floristic relationship. The influence of abiotic factors: luminosity, temperature, relative air humidity and relative soil moisture was evaluated from a redundancy analysis. We found 24 species belonging to 20 genera and 12 families. The fern’s flora showed high floristic heterogeneity (>75% for most of the plot’s associations. The fern’s metacommunity was structured along an abiotic gradient modulated by temperature, luminosity, and relative soil moisture.

Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress.

Science.gov (United States)

Leisner, Courtney P; Yendrek, Craig R; Ainsworth, Elizabeth A

2017-12-12

Understanding how intensification of abiotic stress due to global climate change affects crop yields is important for continued agricultural productivity. Coupling genomic technologies with physiological crop responses in a dynamic field environment is an effective approach to dissect the mechanisms underpinning crop responses to abiotic stress. Soybean (Glycine max L. Merr. cv. Pioneer 93B15) was grown in natural production environments with projected changes to environmental conditions predicted for the end of the century, including decreased precipitation, increased tropospheric ozone concentrations ([O 3 ]), or increased temperature. All three environmental stresses significantly decreased leaf-level photosynthesis and stomatal conductance, leading to significant losses in seed yield. This was driven by a significant decrease in the number of pods per node for all abiotic stress treatments. To understand the underlying transcriptomic response involved in the yield response to environmental stress, RNA-Sequencing analysis was performed on the soybean seed coat, a tissue that plays an essential role in regulating carbon and nitrogen transport to developing seeds. Gene expression analysis revealed 49, 148 and 1,576 differentially expressed genes in the soybean seed coat in response to drought, elevated [O 3 ] and elevated temperature, respectively. Elevated [O 3 ] and drought did not elicit substantive transcriptional changes in the soybean seed coat. However, this may be due to the timing of sampling and does not preclude impacts of those stresses on different tissues or different stages in seed coat development. Expression of genes involved in DNA replication and metabolic processes were enriched in the seed coat under high temperate stress, suggesting that the timing of events that are important for cell division and proper seed development were altered in a stressful growth environment.

Comparison of the abiotic preferences of macroinvertebrates in tropical river basins.

Directory of Open Access Journals (Sweden)

Gert Everaert

Full Text Available We assessed and compared abiotic preferences of aquatic macroinvertebrates in three river basins located in Ecuador, Ethiopia and Vietnam. Upon using logistic regression models we analyzed the relationship between the probability of occurrence of five macroinvertebrate families, ranging from pollution tolerant to pollution sensitive, (Chironomidae, Baetidae, Hydroptilidae, Libellulidae and Leptophlebiidae and physical-chemical water quality conditions. Within the investigated physical-chemical ranges, nine out of twenty-five interaction effects were significant. Our analyses suggested river basin dependent associations between the macroinvertebrate families and the corresponding physical-chemical conditions. It was found that pollution tolerant families showed no clear abiotic preference and occurred at most sampling locations, i.e. Chironomidae were present in 91%, 84% and 93% of the samples taken in Ecuador, Ethiopia and Vietnam. Pollution sensitive families were strongly associated with dissolved oxygen and stream velocity, e.g. Leptophlebiidae were only present in 48%, 2% and 18% of the samples in Ecuador, Ethiopia and Vietnam. Despite some limitations in the study design, we concluded that associations between macroinvertebrates and abiotic conditions can be river basin-specific and hence are not automatically transferable across river basins in the tropics.

Atypical Enteropathogenic Escherichia coli Strains form Biofilm on Abiotic Surfaces Regardless of Their Adherence Pattern on Cultured Epithelial Cells

Directory of Open Access Journals (Sweden)

Hebert F. Culler

2014-01-01

Full Text Available The aim of this study was to determine the capacity of biofilm formation of atypical enteropathogenic Escherichia coli (aEPEC strains on abiotic and biotic surfaces. Ninety-one aEPEC strains, isolated from feces of children with diarrhea, were analyzed by the crystal violet (CV assay on an abiotic surface after 24 h of incubation. aEPEC strains representing each HEp-2 cell type of adherence were analyzed after 24 h and 6, 12, and 18 days of incubation at 37°C on abiotic and cell surfaces by CFU/cm2 counting and confocal laser scanning microscopy (CLSM. Biofilm formation on abiotic surfaces occurred in 55 (60.4% of the aEPEC strains. There was no significant difference in biofilm biomass formation on an abiotic versus prefixed cell surface. The biofilms could be visualized by CLSM at various developmental stages. aEPEC strains are able to form biofilm on an abiotic surface with no association with their adherence pattern on HEp-2 cells with the exception of the strains expressing UND (undetermined adherence. This study revealed the capacity of adhesion and biofilm formation by aEPEC strains on abiotic and biotic surfaces, possibly playing a role in pathogenesis, mainly in cases of persistent diarrhea.

Cultivation of Marine Sponges: From Sea to Cell

NARCIS (Netherlands)

Sipkema, D.

2004-01-01

Marine sponges are one of the richest natural sources of secondary metabolites with a potential pharmaceutical application. A plethora of chemical compounds, with widely varying carbon skeletons, possessing among other anticancer, antiviral, antibiotic, antiinflammatory and antimalaria activity has

Chemical controls on abiotic and biotic release of geogenic arsenic from Pleistocene aquifer sediments to groundwater.

Science.gov (United States)

Gillispie, Elizabeth C; Andujar, Erika; Polizzotto, Matthew L

2016-08-10

Over 150 million people in South and Southeast Asia consume unsafe drinking water from arsenic-rich Holocene aquifers. Although use of As-free water from Pleistocene aquifers is a potential mitigation strategy, such aquifers are vulnerable to geogenic As pollution, placing millions more people at potential risk. The goal of this research was to define chemical controls on abiotic and biotic release of geogenic As to groundwater. Batch incubations of sediments with natural chemical variability from a Pleistocene aquifer in Cambodia were conducted to evaluate how interactions among arsenic, manganese and iron oxides, and dissolved and sedimentary organic carbon influenced As mobilization from sediments. The addition of labile dissolved organic carbon produced the highest concentrations of dissolved As after >7 months, as compared to sediment samples incubated with sodium azide or without added carbon, and the extent of As release was positively correlated with the percent of initial extractable Mn released from the sediments. The mode of As release was impacted by the source of DOC supplied to the sediments, with biological processes responsible for 81% to 85% of the total As release following incubations with lactate and acetate but only up to 43% to 61% of the total As release following incubations with humic and fulvic acids. Overall, cycling of key redox-active elements and organic-carbon reactivity govern the potential for geogenic As release to groundwater, and results here may be used to formulate better predictions of the arsenic pollution potential of aquifers in South and Southeast Asia.

Changes in abiotic influences on seed plants and ferns during 18 years of primary succession on Puerto Rican landslides

Science.gov (United States)

Lawrence R. Walker; Aaron B. Shiels; Peter J. Bellingham; Ashley D. Sparrow; Ned Fetcher; Fred H. Landau; Deborah J. Lodge

2013-01-01

Abiotic variables are critical drivers of succession in most primary seres, but how their influence on biota changes over time is rarely examined. Landslides provide good model systems for examining abiotic influences because they are spatially and temporally heterogeneous habitats with distinct abiotic and biotic gradients and post-landslide erosion. In an 18-year...

Transcriptomic Profiling of the Maize (Zea mays L.) Leaf Response to Abiotic Stresses at the Seedling Stage.

Science.gov (United States)

Li, Pengcheng; Cao, Wei; Fang, Huimin; Xu, Shuhui; Yin, Shuangyi; Zhang, Yingying; Lin, Dezhou; Wang, Jianan; Chen, Yufei; Xu, Chenwu; Yang, Zefeng

2017-01-01

Abiotic stresses, including drought, salinity, heat, and cold, negatively affect maize ( Zea mays L.) development and productivity. To elucidate the molecular mechanisms of resistance to abiotic stresses in maize, RNA-seq was used for global transcriptome profiling of B73 seedling leaves exposed to drought, salinity, heat, and cold stress. A total of 5,330 differentially expressed genes (DEGs) were detected in differential comparisons between the control and each stressed sample, with 1,661, 2,019, 2,346, and 1,841 DEGs being identified in comparisons of the control with salinity, drought, heat, and cold stress, respectively. Functional annotations of DEGs suggested that the stress response was mediated by pathways involving hormone metabolism and signaling, transcription factors (TFs), very-long-chain fatty acid biosynthesis and lipid signaling, among others. Of the obtained DEGs (5,330), 167 genes are common to these four abiotic stresses, including 10 up-regulated TFs (five ERFs, two NACs, one ARF, one MYB, and one HD-ZIP) and two down-regulated TFs (one b-ZIP and one MYB-related), which suggested that common mechanisms may be initiated in response to different abiotic stresses in maize. This study contributes to a better understanding of the molecular mechanisms of maize leaf responses to abiotic stresses and could be useful for developing maize cultivars resistant to abiotic stresses.

Carbon Cycling with Nuclear Power

Science.gov (United States)

Lackner, Klaus S.

2011-11-01

Liquid hydrocarbon fuels like gasoline, diesel or jet fuel are the most efficient ways of delivering energy to the transportation sector, in particular cars, ships and airplanes. Unfortunately, their use nearly unavoidably leads to the emission of carbon dioxide into the atmosphere. Unless an equivalent amount is removed from the air, the carbon dioxide will accumulate and significantly contribute to the man-made greenhouse effect. If fuels are made from biomass, the capture of carbon dioxide is a natural part of the cycle. Here, we discuss technical options for capturing carbon dioxide at much faster rates. We outline the basic concepts, discuss how such capture technologies could be made affordable and show how they could be integrated into a larger system approach. In the short term, the likely source of the hydrocarbon fuels is oil or gas; in the longer term, technologies that can provide energy to remove oxygen from carbon dioxide and water molecules and combine the remaining components into liquid fuels make it possible to recycle carbon between fuels and carbon dioxide in an entirely abiotic process. Here we focus on renewable and nuclear energy options for producing liquid fuels and show how air capture combined with fuel synthesis could be more economic than a transition to electric cars or hydrogen-fueled cars.

Evaluation of long-term corrosion durability and self-healing ability of scratched coating systems on carbon steel in a marine environment

Science.gov (United States)

Zhao, Xia; Chen, Changwei; Xu, Weichen; Zhu, Qingjun; Ge, Chengyue; Hou, Baorong

2017-09-01

Defects in protective-coating systems on steel surfaces are inevitable in practical engineering applications. A composite coating system, including a primer, middle coat and topcoat, were used to protect carbon steel from corrosion in a marine environment. Two environmental additives, glass fibers and thiourea, were applied in the middle coat to modify the coating system. The long-term corrosion durability and self-healing ability of the scratched coating system were evaluated by multiple methods. Results of the electrochemical technologies indicated that the coating system that contained 0.5 wt.% fibers and 0.5 wt.% thiourea presented good corrosion protection and self-healing for carbon steel when immersed in 3.5% NaCl for 120 d. Evolution of localized corrosion factors with time, as obtained from the current distribution showed that fibers combined with thiourea could inhibit the occurrence of local corrosion in scratched coating systems and retarded the corrosion development significantly. Surface characterization suggested that adequate thiourea could be absorbed uniformly on fibers for a long time to play an important role in protecting the carbon steel. Finally, schematic models were established to demonstrate the action of fibers and thiourea on the exposed surface of the carbon steel and the scratched coating system in the entire deterioration process.

Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source

Directory of Open Access Journals (Sweden)

Eleftheria eAntoniou

2015-04-01

Full Text Available Biosurfactants (BS are green amphiphilic molecules produced by microorganisms during biodegradation, increasing the bioavailability of organic pollutants. In this work, the BS production yield of marine hydrocarbon degraders isolated from Elefsina bay in Eastern Mediterranean Sea has been investigated. The drop collapse test was used as a preliminary screening test to confirm biosurfactant producing strains or mixed consortia. The community structure of the best consortia based on the drop collapse test was determined by 16S-rDNA pyrotag screening. Subsequently, the effect of incubation time, temperature, substrate and supplementation with inorganic nutrients, on biosurfactant production, was examined. Two types of BS - lipid mixtures were extracted from the culture broth; the low molecular weight BS Rhamnolipids and Sophorolipids. Crude extracts were purified by silica gel column chromatography and then identified by thin layer chromatography (TLC and Fourier transform infrared spectroscopy (FT-IR. Results indicate that biosurfactant production yield remains constant and low while it is independent of the total culture biomass, carbon source, and temperature. A constant BS concentration in a culture broth with continuous degradation of crude oil implies that the BS producing microbes generate no more than the required amount of biosurfactants that enables biodegradation of the crude oil. Isolated pure strains were found to have higher specific production yields than the complex microbial marine community-consortia. The heavy oil fraction of crude oil has emerged as a promising substrate for BS production (by marine BS producers with fewer impurities in the final product. Furthermore, a particular strain isolated from sediments, Paracoccus marcusii, may be an optimal choice for bioremediation purposes as its biomass remains trapped in the hydrocarbon phase, not suffering from potential dilution effects by sea currents.

Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source

Science.gov (United States)

Antoniou, Eleftheria; Fodelianakis, Stilianos; Korkakaki, Emmanouela; Kalogerakis, Nicolas

2015-01-01

Biosurfactants (BSs) are “green” amphiphilic molecules produced by microorganisms during biodegradation, increasing the bioavailability of organic pollutants. In this work, the BS production yield of marine hydrocarbon degraders isolated from Elefsina bay in Eastern Mediterranean Sea has been investigated. The drop collapse test was used as a preliminary screening test to confirm BS producing strains or mixed consortia. The community structure of the best consortia based on the drop collapse test was determined by 16S-rDNA pyrotag screening. Subsequently, the effect of incubation time, temperature, substrate and supplementation with inorganic nutrients, on BS production, was examined. Two types of BS – lipid mixtures were extracted from the culture broth; the low molecular weight BS Rhamnolipids and Sophorolipids. Crude extracts were purified by silica gel column chromatography and then identified by thin layer chromatography and Fourier transform infrared spectroscopy. Results indicate that BS production yield remains constant and low while it is independent of the total culture biomass, carbon source, and temperature. A constant BS concentration in a culture broth with continuous degradation of crude oil (CO) implies that the BS producing microbes generate no more than the required amount of BSs that enables biodegradation of the CO. Isolated pure strains were found to have higher specific production yields than the complex microbial marine community-consortia. The heavy oil fraction of CO has emerged as a promising substrate for BS production (by marine BS producers) with fewer impurities in the final product. Furthermore, a particular strain isolated from sediments, Paracoccus marcusii, may be an optimal choice for bioremediation purposes as its biomass remains trapped in the hydrocarbon phase, not suffering from potential dilution effects by sea currents. PMID:25904907

Current trends in genetic manipulations to enhance abiotic and ...

African Journals Online (AJOL)

Hitherto, tolerant plants were mainly produced by classical breeding techniques. Success in breeding for better adapted varieties to abiotic and biotic stresses depends on the concerted efforts of various research domains including plant and cell physiology, molecular biology, genetics and breeding. However, such process ...

MEDUSA-2.0: an intermediate complexity biogeochemical model of the marine carbon cycle for climate change and ocean acidification studies

Directory of Open Access Journals (Sweden)

A. Yool

2013-10-01

Full Text Available MEDUSA-1.0 (Model of Ecosystem Dynamics, nutrient Utilisation, Sequestration and Acidification was developed as an "intermediate complexity" plankton ecosystem model to study the biogeochemical response, and especially that of the so-called "biological pump", to anthropogenically driven change in the World Ocean (Yool et al., 2011. The base currency in this model was nitrogen from which fluxes of organic carbon, including export to the deep ocean, were calculated by invoking fixed C:N ratios in phytoplankton, zooplankton and detritus. However, due to anthropogenic activity, the atmospheric concentration of carbon dioxide (CO2 has significantly increased above its natural, inter-glacial background. As such, simulating and predicting the carbon cycle in the ocean in its entirety, including ventilation of CO2 with the atmosphere and the resulting impact of ocean acidification on marine ecosystems, requires that both organic and inorganic carbon be afforded a more complete representation in the model specification. Here, we introduce MEDUSA-2.0, an expanded successor model which includes additional state variables for dissolved inorganic carbon, alkalinity, dissolved oxygen and detritus carbon (permitting variable C:N in exported organic matter, as well as a simple benthic formulation and extended parameterizations of phytoplankton growth, calcification and detritus remineralisation. A full description of MEDUSA-2.0, including its additional functionality, is provided and a multi-decadal spin-up simulation (1860–2005 is performed. The biogeochemical performance of the model is evaluated using a diverse range of observational data, and MEDUSA-2.0 is assessed relative to comparable models using output from the Coupled Model Intercomparison Project (CMIP5.

Shallow marine response to global climate change during the Paleocene-Eocene Thermal Maximum, Salisbury Embayment, USA

Science.gov (United States)

Self-Trail, Jean; Robinson, Marci M.; Bralower, Timothy J.; Sessa, Jocelyn A.; Hajek, Elizabeth A.; Kump, Lee R.; Trampush, Sheila M.; Willard, Debra A.; Edwards, Lucy E.; Powars, David S.; Wandless, Gregory A.

2017-01-01

The Paleocene-Eocene Thermal Maximum (PETM) was an interval of extreme warmth that caused disruption of marine and terrestrial ecosystems on a global scale. Here we examine the sediments, flora, and fauna from an expanded section at Mattawoman Creek-Billingsley Road (MCBR) in Maryland and explore the impact of warming at a nearshore shallow marine (30–100 m water depth) site in the Salisbury Embayment. Observations indicate that at the onset of the PETM, the site abruptly shifted from an open marine to prodelta setting with increased terrestrial and fresh water input. Changes in microfossil biota suggest stratification of the water column and low-oxygen bottom water conditions in the earliest Eocene. Formation of authigenic carbonate through microbial diagenesis produced an unusually large bulk carbon isotope shift, while the magnitude of the corresponding signal from benthic foraminifera is similar to that at other marine sites. This proves that the landward increase in the magnitude of the carbon isotope excursion measured in bulk sediment is not due to a near instantaneous release of 12C-enriched CO2. We conclude that the MCBR site records nearshore marine response to global climate change that can be used as an analog for modern coastal response to global warming.

Shallow marine response to global climate change during the Paleocene-Eocene Thermal Maximum, Salisbury Embayment, USA

Science.gov (United States)

Self-Trail, Jean M.; Robinson, Marci M.; Bralower, Timothy J.; Sessa, Jocelyn A.; Hajek, Elizabeth A.; Kump, Lee R.; Trampush, Sheila M.; Willard, Debra A.; Edwards, Lucy E.; Powars, David S.; Wandless, Gregory A.

2017-07-01

The Paleocene-Eocene Thermal Maximum (PETM) was an interval of extreme warmth that caused disruption of marine and terrestrial ecosystems on a global scale. Here we examine the sediments, flora, and fauna from an expanded section at Mattawoman Creek-Billingsley Road (MCBR) in Maryland and explore the impact of warming at a nearshore shallow marine (30-100 m water depth) site in the Salisbury Embayment. Observations indicate that at the onset of the PETM, the site abruptly shifted from an open marine to prodelta setting with increased terrestrial and fresh water input. Changes in microfossil biota suggest stratification of the water column and low-oxygen bottom water conditions in the earliest Eocene. Formation of authigenic carbonate through microbial diagenesis produced an unusually large bulk carbon isotope shift, while the magnitude of the corresponding signal from benthic foraminifera is similar to that at other marine sites. This proves that the landward increase in the magnitude of the carbon isotope excursion measured in bulk sediment is not due to a near instantaneous release of 12C-enriched CO2. We conclude that the MCBR site records nearshore marine response to global climate change that can be used as an analog for modern coastal response to global warming.

Pan-Arctic concentrations of mercury and stable isotope ratios of carbon (δ{sup 13}C) and nitrogen (δ{sup 15}N) in marine zooplankton

Energy Technology Data Exchange (ETDEWEB)

Pomerleau, Corinne, E-mail: corinne.pomerleau@umanitoba.ca [Centre for Earth Observation Science, University of Manitoba, Winnipeg, MB R3T 2N2 (Canada); Greenland Institute of Natural Resources, Kivioq 2, Nuuk 3900, Greenland (Denmark); Stern, Gary A.; Pućko, Monika [Centre for Earth Observation Science, University of Manitoba, Winnipeg, MB R3T 2N2 (Canada); Foster, Karen L. [Foster Environmental, Peterborough, ON K9J 8L2 (Canada); Macdonald, Robie W. [Institute of Ocean Sciences, Fisheries and Oceans Canada, Sidney, BC V8L 4B2 (Canada); Fortier, Louis [Québec-Océan, Département de Biologie, Université Laval, Québec, QC G1V 0A6 (Canada)

2016-05-01

Zooplankton play a central role in marine food webs, dictating the quantity and quality of energy available to upper trophic levels. They act as “keystone” species in transfer of mercury (Hg) up through the marine food chain. Here, we present the first Pan-Arctic overview of total and monomethylmercury concentrations (THg and MMHg) and stable isotope ratios of carbon (δ{sup 13}C) and nitrogen (δ{sup 15}N) in selected zooplankton species by assembling data collected between 1998 and 2012 from six arctic regions (Laptev Sea, Chukchi Sea, southeastern Beaufort Sea, Canadian Arctic Archipelago, Hudson Bay and northern Baffin Bay). MMHg concentrations in Calanus spp., Themisto spp. and Paraeuchaeta spp. were found to increase with higher δ{sup 15}N and lower δ{sup 13}C. The southern Beaufort Sea exhibited both the highest THg and MMHg concentrations. Biomagnification of MMHg between Calanus spp. and two of its known predators, Themisto spp. and Paraeuchaeta spp., was greatest in the southern Beaufort Sea. Our results show large geographical variations in Hg concentrations and isotopic signatures for individual species related to regional ecosystem features, such as varying water masses and freshwater inputs, and highlight the increased exposure to Hg in the marine food chain of the southern Beaufort Sea. - Highlights: • Assessment of Pan-Arctic variability in zooplankton Hg concentrations • Increased exposure to Hg in the marine food chain of the southern Beaufort Sea • Zooplankton plays a central role in the Hg pathway within Arctic marine food webs.

Utilizing Genetic Resources and Precision Agriculture to Enhance Resistance to Biotic and Abiotic Stress in Watermelon

Directory of Open Access Journals (Sweden)

Mihail KANTOR

2018-03-01

Full Text Available Originally from Africa, watermelon is a staple crop in South Carolina and rich source of important phytochemicals that promote human health. As a result of many years of domestication and selection for desired fruit quality, modern watermelon cultivars are susceptible to biotic and abiotic stress. The present review discusses how genetic selection and breeding combined with geospatial technologies (precision agriculture may help enhance watermelon varieties for resistance to biotic and abiotic stress. Gene loci identified and selected in undomesticated watermelon accessions are responsible for resistance to diseases, pests and abiotic stress. Vegetable breeding programs use traditional breeding methodologies and genomic tools to introduce gene loci conferring biotic or abiotic resistance into the genome background of elite watermelon cultivars. This continuous approach of collecting, evaluating and identifying useful genetic material is valuable for enhancing genetic diversity and tolerance and combined with precision agriculture could increase food security in the Southeast.

Can environmental conditions trigger cyanobacterial surfaces and following carbonate formation: implication for biomineralization and biotechnology

Science.gov (United States)

Paulo, C.; Dittrich, M.; Zhu, T.

2015-12-01

In this presentation we will give an overview what kind of the factors may trigger carbonate formations at the cell surfaces under a variety of environmental conditions. As examples, we will present the results from our recent studies on formation of calcium carbonates, dolomites and bio-cements. The extracellular polymeric substances (EPS) in the Synechococcuscell envelope are recognized key players in the nucleation of carbonates in marine and freshwater environments. Yet, little is known about a nutrient contents control over the molecular composition of Synechococcus cell envelope, and consequently, biomineralization. In the first study, we investigated how a variation of the phosphorus (P) in the growth media can lead to changes in the surface reactivity of the cells and impact their ability to form carbonates. The objective of the second study is to gain insights into the spatial distribution of cyanobacterial EPS and dolomite from different sediment layers of Khor Al-Adaid sabkha (Qatar). Here, we characterized microbial mats on molecular level in respect of organic and inorganic components using in-situ 2D Raman spectroscopy and Atomic Force Microscopy (AFM) were used. Additionally, 2D chemical maps of sediment layers documented spectral characterizations of minerals and organic matter of microbial origins at high spatial resolution. Finally, we will show the results from the experiments with auto-phototrophic cyanobacteria Gloeocapsa PCC73106, which habitat on the monument surfaces, towards its application for bio-concrete, a product of microbial carbonate precipitation. We studied the biomineralization in biofilm forming Gloeocapsa PCC73106 on the concrete surface as a pre-requirement for microbial carbonate precipitation. Biomineralization on the concrete surface by live cells and killed cells were compared with that under the abiotic condition. Our experiments allow us to conclude that environmental conditions play a significant role in the control of

Resilience of cereal crops to abiotic stress: A review

African Journals Online (AJOL)

SAM

2014-07-16

Jul 16, 2014 ... Key words: Cereal crops, abiotic stresses, food insecurity, molecular breeding, quantitative trait loci (QTLs), salinity, water stress. ... production of genetically modified (GM) crops, exo- genous use of osmo protectants etc. ... stressful environments is important to fulfill food demand of the ever-increasing world ...

STRESS ECOLOGY IN FUCUS : ABIOTIC, BIOTIC AND GENETIC INTERACTIONS

NARCIS (Netherlands)

Wahl, Martin; Jormalainen, Veijo; Eriksson, Britas Klemens; Coyer, James A.; Molis, Markus; Schubert, Hendrik; Dethier, Megan; Karez, Rolf; Kruse, Inken; Lenz, Mark; Pearson, Gareth; Rohde, Sven; Wikstrom, Sofia A.; Olsen, Jeanine L.; Lesser, M

2011-01-01

Stress regimes defined as the synchronous or sequential action of abiotic and biotic stresses determine the performance and distribution of species. The natural patterns of stress to which species are more or less well adapted have recently started to shift and alter under the influence of global

Understanding the Posttranscriptional Regulation of Plant Responses to Abiotic Stress

KAUST Repository

Alshareef, Sahar

2017-01-01

Constitutive and alternative splicing of pre-mRNAs from multiexonic genes controls the diversity of the proteome; these precisely regulated processes also fine-tune responses to cues related to growth, development, and biotic and abiotic stresses

An index-based approach to assessing recalcitrance and soil carbon sequestration potential of engineered black carbons (biochars).

Science.gov (United States)

Harvey, Omar R; Kuo, Li-Jung; Zimmerman, Andrew R; Louchouarn, Patrick; Amonette, James E; Herbert, Bruce E

2012-02-07

The ability of engineered black carbons (or biochars) to resist abiotic and, or biotic degradation (herein referred to as recalcitrance) is crucial to their successful deployment as a soil carbon sequestration strategy. A new recalcitrance index, the R(50), for assessing biochar quality for carbon sequestration is proposed. The R(50) is based on the relative thermal stability of a given biochar to that of graphite and was developed and evaluated with a variety of biochars (n = 59), and soot-like black carbons. Comparison of R(50), with biochar physicochemical properties and biochar-C mineralization revealed the existence of a quantifiable relationship between R(50) and biochar recalcitrance. As presented here, the R(50) is immediately applicable to pre-land application screening of biochars into Class A (R(50) ≥ 0.70), Class B (0.50 ≤ R(50) carbon sequestration classes. Class A and Class C biochars would have carbon sequestration potential comparable to soot/graphite and uncharred plant biomass, respectively, whereas Class B biochars would have intermediate carbon sequestration potential. We believe that the coupling of the R(50), to an index-based degradation, and an economic model could provide a suitable framework in which to comprehensively assess soil carbon sequestration in biochars.

Impact of Post-Translational Modifications of Crop Proteins under Abiotic Stress

Directory of Open Access Journals (Sweden)

Akiko Hashiguchi

2016-12-01

Full Text Available The efficiency of stress-induced adaptive responses of plants depends on intricate coordination of multiple signal transduction pathways that act coordinately or, in some cases, antagonistically. Protein post-translational modifications (PTMs can regulate protein activity and localization as well as protein–protein interactions in numerous cellular processes, thus leading to elaborate regulation of plant responses to various external stimuli. Understanding responses of crop plants under field conditions is crucial to design novel stress-tolerant cultivars that maintain robust homeostasis even under extreme conditions. In this review, proteomic studies of PTMs in crops are summarized. Although the research on the roles of crop PTMs in regulating stress response mechanisms is still in its early stage, several novel insights have been retrieved so far. This review covers techniques for detection of PTMs in plants, representative PTMs in plants under abiotic stress, and how PTMs control functions of representative proteins. In addition, because PTMs under abiotic stresses are well described in soybeans under submergence, recent findings in PTMs of soybean proteins under flooding stress are introduced. This review provides information on advances in PTM study in relation to plant adaptations to abiotic stresses, underlining the importance of PTM study to ensure adequate agricultural production in the future.

Metabolomics as a Tool to Investigate Abiotic Stress Tolerance in Plants

Directory of Open Access Journals (Sweden)

Aurelio Gómez-Cadenas

2013-03-01

Full Text Available Metabolites reflect the integration of gene expression, protein interaction and other different regulatory processes and are therefore closer to the phenotype than mRNA transcripts or proteins alone. Amongst all –omics technologies, metabolomics is the most transversal and can be applied to different organisms with little or no modifications. It has been successfully applied to the study of molecular phenotypes of plants in response to abiotic stress in order to find particular patterns associated to stress tolerance. These studies have highlighted the essential involvement of primary metabolites: sugars, amino acids and Krebs cycle intermediates as direct markers of photosynthetic dysfunction as well as effectors of osmotic readjustment. On the contrary, secondary metabolites are more specific of genera and species and respond to particular stress conditions as antioxidants, Reactive Oxygen Species (ROS scavengers, coenzymes, UV and excess radiation screen and also as regulatory molecules. In addition, the induction of secondary metabolites by several abiotic stress conditions could also be an effective mechanism of cross-protection against biotic threats, providing a link between abiotic and biotic stress responses. Moreover, the presence/absence and relative accumulation of certain metabolites along with gene expression data provides accurate markers (mQTL or MWAS for tolerant crop selection in breeding programs.

A new physically-based quantification of marine isoprene and primary organic aerosol emissions

Directory of Open Access Journals (Sweden)

N. Meskhidze

2009-07-01

Full Text Available The global marine sources of organic carbon (OC are estimated here using a physically-based parameterization for the emission of marine isoprene and primary organic matter. The marine isoprene emission model incorporates new physical parameters such as light sensitivity of phytoplankton isoprene production and dynamic euphotic depth to simulate hourly marine isoprene emissions totaling 0.92 Tg C yr⁻¹. Sensitivity studies using different schemes for the euphotic zone depth and ocean phytoplankton speciation produce the upper and the lower range of marine-isoprene emissions of 0.31 to 1.09 Tg C yr⁻¹, respectively. Established relationships between sea spray fractionation of water-insoluble organic carbon (WIOC and chlorophyll-a concentration are used to estimate the total primary sources of marine sub- and super-micron OC of 2.9 and 19.4 Tg C yr⁻¹, respectively. The consistent spatial and temporal resolution of the two emission types allow us, for the first time, to explore the relative contributions of sub- and super-micron organic matter and marine isoprene-derived secondary organic aerosol (SOA to the total OC fraction of marine aerosol. Using a fixed 3% mass yield for the conversion of isoprene to SOA, our emission simulations show minor (<0.2% contribution of marine isoprene to the total marine source of OC on a global scale. However, our model calculations also indicate that over the tropical oceanic regions (30° S to 30° N, marine isoprene SOA may contribute over 30% of the total monthly-averaged sub-micron OC fraction of marine aerosol. The estimated contribution of marine isoprene SOA to hourly-averaged sub-micron marine OC emission is even higher, approaching 50% over the vast regions of the oceans during the midday hours when isoprene emissions are highest. As it is widely believed that sub-micron OC has the potential to influence the cloud droplet activation of marine aerosols, our

The Worldwide Marine Radiocarbon Reservoir Effect: Definitions, Mechanisms, and Prospects

Science.gov (United States)

Alves, Eduardo Q.; Macario, Kita; Ascough, Philippa; Bronk Ramsey, Christopher

2018-03-01

When a carbon reservoir has a lower radiocarbon content than the atmosphere, this is referred to as a reservoir effect. This is expressed as an offset between the radiocarbon ages of samples from the two reservoirs at a single point in time. The marine reservoir effect (MRE) has been a major concern in the radiocarbon community, as it introduces an additional source of error that is often difficult to accurately quantify. For this reason, researchers are often reluctant to date marine material where they have another option. The influence of this phenomenon makes the study of the MRE important for a broad range of applications. The advent of Accelerator Mass Spectrometry (AMS) has reduced sample size requirements and increased measurement precision, in turn increasing the number of studies seeking to measure marine samples. These studies rely on overcoming the influence of the MRE on marine radiocarbon dates through the worldwide quantification of the local parameter ΔR, that is, the local variation from the global average MRE. Furthermore, the strong dependence on ocean dynamics makes the MRE a useful indicator for changes in oceanic circulation, carbon exchange between reservoirs, and the fate of atmospheric CO2, all of which impact Earth's climate. This article explores data from the Marine Reservoir Database and reviews the place of natural radiocarbon in oceanic records, focusing on key questions (e.g., changes in ocean dynamics) that have been answered by MRE studies and on their application to different subjects.

An unaccounted fraction of marine biogenic CaCO3 particles.

Directory of Open Access Journals (Sweden)

Mikal Heldal

Full Text Available Biogenic production and sedimentation of calcium carbonate in the ocean, referred to as the carbonate pump, has profound implications for the ocean carbon cycle, and relate both to global climate, ocean acidification and the geological past. In marine pelagic environments coccolithophores, foraminifera and pteropods have been considered the main calcifying organisms. Here, we document the presence of an abundant, previously unaccounted fraction of marine calcium carbonate particles in seawater, presumably formed by bacteria or in relation to extracellular polymeric substances. The particles occur in a variety of different morphologies, in a size range from 100 µm, and in a typical concentration of 10(4-10(5 particles L(-1 (size range counted 1-100 µm. Quantitative estimates of annual averages suggests that the pure calcium particles we counted in the 1-100 µm size range account for 2-4 times more CaCO(3 than the dominating coccolithophoride Emiliania huxleyi and for 21% of the total concentration of particulate calcium. Due to their high density, we hypothesize that the particles sediment rapidly, and therefore contribute significantly to the export of carbon and alkalinity from surface waters. The biological and environmental factors affecting the formation of these particles and possible impact of this process on global atmospheric CO(2 remains to be investigated.

Overexpression of an abiotic-stress inducible plant protein in the ...

African Journals Online (AJOL)

STORAGESEVER

2008-09-17

Sep 17, 2008 ... the universal stress hormone, is supplied in the culture ... various abiotic stress like water deficit, high salinity and low temperature or exogenous ... period in a plant growth chamber (NIPPON, LHP-100-RDS, Tokyo,. Japan).

Carbon Storage of Forest Vegetation in China and its Relationship with Climatic Factors

International Nuclear Information System (INIS)

Zhao, M.; Zhou, Guang-Sheng

2006-01-01

Estimates of forest vegetation carbon storage in China varied due to different methods used in the assessments. In this paper, we estimated the forest vegetation carbon storage from the Fourth Forest Inventory Data (FFID) in China using a modified volume-derived method. Results showed that total carbon storage and mean carbon density of forest vegetation in China were 3.8 Pg C (about 1.1% of the global vegetation carbon stock) and 41.32 Mg/ha, respectively. In addition, based on linear multiple regression equation and factor analysis method, we analyzed contributions of biotic and abiotic factors (including mean forest age, mean annual temperature, annual precipitation, and altitude) to forest carbon storage. Our results indicated that forest vegetation carbon storage was more sensitive to changes of mean annual temperature than other factors, suggesting that global warming would seriously affect the forest carbon storage

Photochemically induced carbon dioxide production as a mechanism for carbon loss from plant litter in arid ecosystems

Science.gov (United States)

Brandt, L. A.; Bohnet, C.; King, J. Y.

2009-06-01

We investigated the potential for abiotic mineralization to carbon dioxide (CO2) via photodegradation to account for carbon (C) loss from plant litter under conditions typical of arid ecosystems. We exposed five species of grass and oak litter collected from arid and mesic sites to a factorial design of ultraviolet (UV) radiation (UV pass, UV block), and sterilization under dry conditions in the laboratory. UV pass treatments produced 10 times the amount of CO2 produced in UV block treatments. CO2 production rates were unaffected by litter chemistry or sterilization. We also exposed litter to natural solar radiation outdoors on clear, sunny days close to the summer solstice at midlatitudes and found that UV radiation (280-400 nm) accounted for 55% of photochemically induced CO2 production, while shortwave visible radiation (400-500 nm) accounted for 45% of CO2 production. Rates of photochemically induced CO2 production on a per-unit-mass basis decreased with litter density, indicating that rates depend on litter surface area. We found no evidence for leaching, methane production, or facilitation of microbial decomposition as alternative mechanisms for significant photochemically induced C loss from litter. We conclude that abiotic mineralization to CO2 is the primary mechanism by which C is lost from litter during photodegradation. We estimate that CO2 production via photodegradation could be between 1 and 4 g C m-2 a-1 in arid ecosystems in the southwestern United States. Taken together with low levels of litter production in arid systems, photochemical mineralization to CO2 could account for a significant proportion of annual carbon loss from litter in arid ecosystems.

Abiotic factors drives floristic variations of fern’s metacommunity in an Atlantic Forest remnant

OpenAIRE

L. E. N. Costa; R. P. Farias; A. C. P. Santiago; I. A. A. Silva; I. C. L. Barros

2018-01-01

Abstract We analyzed floristic variations in fern’s metacommunity at the local scale and their relationship with abiotic factors in an Atlantic Forest remnant of northeastern Brazil. Floristic and environmental variations were accessed on ten plots of 10 × 20 m. We performed cluster analyses, based on Bray-Curtis dissimilarity index to establish the floristic relationship. The influence of abiotic factors: luminosity, temperature, relative air humidity and relative soil moisture was evaluated...

Carbon K-edge spectra of carbonate minerals.

Science.gov (United States)

Brandes, Jay A; Wirick, Sue; Jacobsen, Chris

2010-09-01

Carbon K-edge X-ray spectroscopy has been applied to the study of a wide range of organic samples, from polymers and coals to interstellar dust particles. Identification of carbonaceous materials within these samples is accomplished by the pattern of resonances in the 280-320 eV energy region. Carbonate minerals are often encountered in the study of natural samples, and have been identified by a distinctive resonance at 290.3 eV. Here C K-edge and Ca L-edge spectra from a range of carbonate minerals are presented. Although all carbonates exhibit a sharp 290 eV resonance, both the precise position of this resonance and the positions of other resonances vary among minerals. The relative strengths of the different carbonate resonances also vary with crystal orientation to the linearly polarized X-ray beam. Intriguingly, several carbonate minerals also exhibit a strong 288.6 eV resonance, consistent with the position of a carbonyl resonance rather than carbonate. Calcite and aragonite, although indistinguishable spectrally at the C K-edge, exhibited significantly different spectra at the Ca L-edge. The distinctive spectral fingerprints of carbonates provide an identification tool, allowing for the examination of such processes as carbon sequestration in minerals, Mn substitution in marine calcium carbonates (dolomitization) and serpentinization of basalts.

Carbon K-edge Spectra of Carbonate Minerals

Energy Technology Data Exchange (ETDEWEB)

Brandes, J.; Wirick, S; Jacobsen, C

2010-01-01

Carbon K-edge X-ray spectroscopy has been applied to the study of a wide range of organic samples, from polymers and coals to interstellar dust particles. Identification of carbonaceous materials within these samples is accomplished by the pattern of resonances in the 280-320 eV energy region. Carbonate minerals are often encountered in the study of natural samples, and have been identified by a distinctive resonance at 290.3 eV. Here C K-edge and Ca L-edge spectra from a range of carbonate minerals are presented. Although all carbonates exhibit a sharp 290 eV resonance, both the precise position of this resonance and the positions of other resonances vary among minerals. The relative strengths of the different carbonate resonances also vary with crystal orientation to the linearly polarized X-ray beam. Intriguingly, several carbonate minerals also exhibit a strong 288.6 eV resonance, consistent with the position of a carbonyl resonance rather than carbonate. Calcite and aragonite, although indistinguishable spectrally at the C K-edge, exhibited significantly different spectra at the Ca L-edge. The distinctive spectral fingerprints of carbonates provide an identification tool, allowing for the examination of such processes as carbon sequestration in minerals, Mn substitution in marine calcium carbonates (dolomitization) and serpentinization of basalts.

ROS-mediated abiotic stress-induced programmed cell death in plants

Directory of Open Access Journals (Sweden)

Veselin ePetrov

2015-02-01

Full Text Available During the course of their ontogenesis, plants are continuously exposed to a large variety of abiotic stress factors which can damage tissues and jeopardize the survival of the organism unless properly countered. While animals can simply escape and thus evade stressors, plants as sessile organisms have developed complex strategies to withstand them. When the intensity of a detrimental factor is high, one of the defense programs employed by plants is the induction of programmed cell death (PCD. This is an active, genetically controlled process which is initiated to isolate and remove damaged tissues thereby ensuring the survival of the organism. The mechanism of PCD induction usually includes an increase in the levels of reactive oxygen species (ROS which are utilized as mediators of the stress signal. Abiotic stress-induced PCD is not only a process of fundamental biological importance, but also of considerable interest to agricultural practice as it has the potential to significantly influence crop yield. Therefore, numerous scientific enterprises have focused on elucidating the mechanisms leading to and controlling PCD in response to adverse conditions in plants. This knowledge may help to develop novel strategies to obtain more resilient crop varieties with improved tolerance and enhanced productivity. The aim of the present review is to summarize the recent advances in research on ROS-induced PCD related to abiotic stress and the role of the organelles in the process.

The Grape VlWRKY3 Gene Promotes Abiotic and Biotic Stress Tolerance in Transgenic Arabidopsis thaliana

Directory of Open Access Journals (Sweden)

Rongrong Guo

2018-04-01

Full Text Available WRKY transcription factors are known to play important roles in plant responses to various abiotic and biotic stresses. The grape WRKY gene, WRKY3 was previously reported to respond to salt and drought stress, as well as methyl jasmonate and ethylene treatments in Vitis labrusca × V. vinifera cv. ‘Kyoho.’ In the current study, WRKY3 from the ‘Kyoho’ grape cultivar was constitutively expressed in Arabidopsis thaliana under control of the cauliflower mosaic virus 35S promoter. The 35S::VlWRKY3 transgenic A. thaliana plants showed improved salt and drought stress tolerance during the germination, seedling and the mature plant stages. Various physiological traits related to abiotic stress responses were evaluated to gain further insight into the role of VlWRKY3, and it was found that abiotic stress caused less damage to the transgenic seedlings than to the wild-type (WT plants. VlWRKY3 over-expression also resulted in altered expression levels of abiotic stress-responsive genes. Moreover, the 35S::VlWRKY3 transgenic A. thaliana lines showed improved resistance to Golovinomyces cichoracearum, but increased susceptibility to Botrytis cinerea, compared with the WT plants. Collectively, these results indicate that VlWRKY3 plays important roles in responses to both abiotic and biotic stress, and modification of its expression may represent a strategy to enhance stress tolerance in crops.

[Inhibitors of proteolytic enzymes under abiotic stresses in plants (review)].

Science.gov (United States)

Mosolov, V V; Valueva, T A

2011-01-01

Data on the role of proteolytic enzyme inhibitors in plant adaptation to various unfavorable environmental abiotic factors--water deficiency, salinization of soil, extreme temperatures, etc.--and also probable functions of proteinases inhibitors in natural plant senescense are considered.

Deposition and benthic mineralization of organic carbon

DEFF Research Database (Denmark)

Nordi, Gunnvor A.; Glud, Ronnie N.; Simonsen, Knud

2018-01-01

Seasonal variations in sedimentation and benthic mineralization of organic carbon (OC) were investigated in a Faroese fjord. Deposited particulate organic carbon (POC) was mainly of marine origin, with terrestrial material only accounting for b1%. On an annual basis the POC export fromthe euphotic...

Abiotic factors influencing tropical dry forests regeneration

Directory of Open Access Journals (Sweden)

Ceccon Eliane

2006-01-01

Full Text Available Tropical dry forests represent nearly half the tropical forests in the world and are the ecosystems registering the greatest deterioration from the anthropogenic exploitation of the land. This paper presents a review on the dynamics of tropical dry forests regeneration and the main abiotic factors influencing this regeneration, such as seasonal nature, soil fertility and humidity, and natural and anthropic disturbances. The main purpose is to clearly understand an important part of TDF succession dynamics.

Carbon isotopes in the ocean model of the Community Earth System Model (CESM1

Directory of Open Access Journals (Sweden)

A. Jahn

2015-08-01

Full Text Available Carbon isotopes in the ocean are frequently used as paleoclimate proxies and as present-day geochemical ocean tracers. In order to allow a more direct comparison of climate model results with this large and currently underutilized data set, we added a carbon isotope module to the ocean model of the Community Earth System Model (CESM, containing the cycling of the stable isotope 13C and the radioactive isotope 14C. We implemented the 14C tracer in two ways: in the "abiotic" case, the 14C tracer is only subject to air–sea gas exchange, physical transport, and radioactive decay, while in the "biotic" version, the 14C additionally follows the 13C tracer through all biogeochemical and ecological processes. Thus, the abiotic 14C tracer can be run without the ecosystem module, requiring significantly fewer computational resources. The carbon isotope module calculates the carbon isotopic fractionation during gas exchange, photosynthesis, and calcium carbonate formation, while any subsequent biological process such as remineralization as well as any external inputs are assumed to occur without fractionation. Given the uncertainty associated with the biological fractionation during photosynthesis, we implemented and tested three parameterizations of different complexity. Compared to present-day observations, the model is able to simulate the oceanic 14C bomb uptake and the 13C Suess effect reasonably well compared to observations and other model studies. At the same time, the carbon isotopes reveal biases in the physical model, for example, too sluggish ventilation of the deep Pacific Ocean.

Carbon isotopes in the ocean model of the Community Earth System Model (CESM1)

Science.gov (United States)

Jahn, A.; Lindsay, K.; Giraud, X.; Gruber, N.; Otto-Bliesner, B. L.; Liu, Z.; Brady, E. C.

2015-08-01

Carbon isotopes in the ocean are frequently used as paleoclimate proxies and as present-day geochemical ocean tracers. In order to allow a more direct comparison of climate model results with this large and currently underutilized data set, we added a carbon isotope module to the ocean model of the Community Earth System Model (CESM), containing the cycling of the stable isotope 13C and the radioactive isotope 14C. We implemented the 14C tracer in two ways: in the "abiotic" case, the 14C tracer is only subject to air-sea gas exchange, physical transport, and radioactive decay, while in the "biotic" version, the 14C additionally follows the 13C tracer through all biogeochemical and ecological processes. Thus, the abiotic 14C tracer can be run without the ecosystem module, requiring significantly fewer computational resources. The carbon isotope module calculates the carbon isotopic fractionation during gas exchange, photosynthesis, and calcium carbonate formation, while any subsequent biological process such as remineralization as well as any external inputs are assumed to occur without fractionation. Given the uncertainty associated with the biological fractionation during photosynthesis, we implemented and tested three parameterizations of different complexity. Compared to present-day observations, the model is able to simulate the oceanic 14C bomb uptake and the 13C Suess effect reasonably well compared to observations and other model studies. At the same time, the carbon isotopes reveal biases in the physical model, for example, too sluggish ventilation of the deep Pacific Ocean.

Characterization and comparison of iron oxyhydroxide precipitates from biotic and abiotic groundwater treatments

DEFF Research Database (Denmark)

Arturi, Katarzyna R.; Bender Koch, Christian; Søgaard, Erik G.

2017-01-01

Removal of iron is an important step in groundwater treatment for drinking water production. It is performed to prevent organoleptic issues and clogging in water supply systems. Iron can be eliminated with a purely physico-chemical (abiotic) method or biotically with the help of iron......-oxidizing bacteria (FeOB). Each of the purification methods requires different operating conditions and results in formation of iron oxyhydroxide (FeOOH) precipitates. Knowledge about the differences in composition and properties of the biotic and abiotic precipitates is desirable from a technical, but also...

MICROSCALE METABOLIC, REDOX AND ABIOTIC REACTIONS IN HANFORD 300 AREA SUBSURFACE SEDIMENTS

Energy Technology Data Exchange (ETDEWEB)

Beyenal, Haluk [WSU; McLEan, Jeff [JCVI; Majors, Paul [PNNL; Fredrickson, Jim [PNNL

2013-11-14

The Hanford 300 Area is a unique site due to periodic hydrologic influence of river water resulting in changes in groundwater elevation and flow direction. This area is also highly subject to uranium remobilization, the source of which is currently believed to be the region at the base of the vadose zone that is subject to period saturation due to the changes in the water levels in the Columbia River. We found that microbial processes and redox and abiotic reactions which operate at the microscale were critical to understanding factors controlling the macroscopic fate and transport of contaminants in the subsurface. The combined laboratory and field research showed how microscale conditions control uranium mobility and how biotic, abiotic and redox reactions relate to each other. Our findings extended the current knowledge to examine U(VI) reduction and immobilization using natural 300 Area communities as well as selected model organisms on redox-sensitive and redox-insensitive minerals. Using innovative techniques developed specifically to probe biogeochemical processes at the microscale, our research expanded our current understanding of the roles played by mineral surfaces, bacterial competition, and local biotic, abiotic and redox reaction rates on the reduction and immobilization of uranium.

SERDP ER-1421 Abiotic and Biotic Mechanisms Controlling In Situ Remediation of NDMA: Final Report

Energy Technology Data Exchange (ETDEWEB)

Szecsody, James E.; McKinley, James P.; Crocker, Fiona H.; Breshears, Andrew T.; Devary, Brooks J.; Fredrickson, Herbert L.; Thompson, Karen T.

2009-09-30

This laboratory-scale project was initiated to investigate in situ abiotic/biotic mineralization of NDMA. Under iron-reducing conditions, aquifer sediments showed rapid abiotic NDMA degradation to dimethylamine (DMA), nitrate, formate, and finally, CO2. These are the first reported experiments of abiotic NDMA mineralization. The NDMA reactivity of these different iron phases showed that adsorbed ferrous iron was the dominant reactive phase that promoted NDMA reduction, and other ferrous phases present (siderite, iron sulfide, magnetite, structural ferrous iron in 2:1 clays) did not promote NDMA degradation. In contrast, oxic sediments that were biostimulated with propane promoted biomineralization of NDMA by a cometabolic monooxygenase enzyme process. Other monooxygenase enzyme processes were not stimulated with methane or toluene additions, and acetylene addition did not block mineralization. Although NDMA mineralization extent was the highest in oxic, biostimulated sediments (30 to 82%, compared to 10 to 26% for abiotic mineralization in reduced sediments), large 1-D column studies (high sediment/water ratio of aquifers) showed 5.6 times higher NDMA mineralization rates in reduced sediment (half-life 410 ± 147 h) than oxic biomineralization (half life 2293 ± 1866 h). Sequential reduced/oxic biostimulated sediment mineralization (half-life 3180 ± 1094 h) was also inefficient compared to reduced sediment. These promising laboratory-scale results for NDMA mineralization should be investigated at field scale. Future studies of NDMA remediation should focus on the comparison of this in situ abiotic NDMA mineralization (iron-reducing environments) to ex situ biomineralization, which has been shown successful in other studies.

Abiotic nitrate reduction in the presence of steel material and hydrogen in cementitious environments

International Nuclear Information System (INIS)

Truche, L.; Berger, G.; Albrecht, A.

2012-01-01

Document available in extended abstract form only. Abiotic nitrate reduction induced by different electron donors represents a major reaction of interest in the context of disposal of nuclear waste containing such oxyanions (Honda et al., 2006; Katsounaros et al., 2009). These wastes are characterized, amongst others by the coexistence of oxyanions (nitrate, phosphate, sulfate...) and potentially reducing agents such as organic matter, native metals and hydrogen gas formed or from package material via radiolysis or anaerobic corrosion. In addition to the large number of reactants present in the waste itself, the medium-level long-lived (MAVL) waste concept is based on large masses of concrete and steel in part used for primary waste containers as well as armored cement over pack and engineered barrier; a concept that guarantees the mechanical stability of both the waste container and the waste cell. In this experimental study we evaluate the consequences of steel material (carbon steel and 316L stainless steel) from waste canisters and construction material (concrete and Callovo- Oxfordian argillite), as well as magnetite as their possible corrosion by-products, on the reduction of aqueous nitrate in the presence of hydrogen. A parametric study (0 2 ) - ] 2+ , Fe 2+ ) that can act as electron donors. This experimental study demonstrates that abiotic nitrate reduction induced by the combination of steel materials and hydrogen is a likely process under waste cell conditions, thus applicable to cases where nitrate-bearing waste (i.e. nuclear) is disposed in near-surface or in deep geological settings. Depending on the nature of the steel, the reaction may exhibit different kinetic features that would require dedicated assessment. An increase in nitrate concentrat ions above the steel saturation level of 10 mM (Fig. 1; beyond the range of the current study) may also have an influence on reaction processes and kinetics and thus influence nitrate reactivity. (authors)

The Role of B Vitamins in Marine Biogeochemistry

Science.gov (United States)

Sañudo-Wilhelmy, Sergio A.; Gómez-Consarnau, Laura; Suffridge, Christopher; Webb, Eric A.

2014-01-01

The soluble B vitamins (B1, B7, and B12) have long been recognized as playing a central metabolic role in marine phytoplankton and bacteria; however, the importance of these organic external metabolites in marine ecology has been largely disregarded, as most research has focused on inorganic nutrients and trace metals. Using recently available genomic data combined with culture-based surveys of vitamin auxotrophy (i.e., vitamin requirements), we show that this auxotrophy is widespread in the marine environment and occurs in both autotrophs and heterotrophs residing in oligotrophic and eutrophic environments. Our analysis shows that vitamins originate from the activities of some bacteria and algae and that taxonomic changes observed in marine phytoplankton communities could be the result of their specific vitamin requirements and/or vitamin availability. Dissolved vitamin concentration measurements show that large areas of the world ocean are devoid of B vitamins, suggesting that vitamin limitation could be important for the efficiency of carbon and nitrogen fixation in those regions.

Marine ecosystem modeling beyond the box: using GIS to study carbon fluxes in a coastal ecosystem.

Science.gov (United States)

Wijnbladh, Erik; Jönsson, Bror Fredrik; Kumblad, Linda

2006-12-01

Studies of carbon fluxes in marine ecosystems are often done by using box model approaches with basin size boxes, or highly resolved 3D models, and an emphasis on the pelagic component of the ecosystem. Those approaches work well in the ocean proper, but can give rise to considerable problems when applied to coastal systems, because of the scale of certain ecological niches and the fact that benthic organisms are the dominant functional group of the ecosystem. In addition, 3D models require an extensive modeling effort. In this project, an intermediate approach based on a high resolution (20x20 m) GIS data-grid has been developed for the coastal ecosystem in the Laxemar area (Baltic Sea, Sweden) based on a number of different site investigations. The model has been developed in the context of a safety assessment project for a proposed nuclear waste repository, in which the fate of hypothetically released radionuclides from the planned repository is estimated. The assessment project requires not only a good understanding of the ecosystem dynamics at the site, but also quantification of stocks and flows of matter in the system. The data-grid was then used to set up a carbon budget describing the spatial distribution of biomass, primary production, net ecosystem production and thus where carbon sinks and sources are located in the area. From these results, it was clear that there was a large variation in ecosystem characteristics within the basins and, on a larger scale, that the inner areas are net producing and the outer areas net respiring, even in shallow phytobenthic communities. Benthic processes had a similar or larger influence on carbon fluxes as advective processes in inner areas, whereas the opposite appears to be true in the outer basins. As many radionuclides are expected to follow the pathways of organic matter in the environment, these findings enhance our abilities to realistically describe and predict their fate in the ecosystem.

Marine Ecosystem Modeling Beyond the Box: Using GIS to Study Carbon Fluxes in a Coastal Ecosystem

International Nuclear Information System (INIS)

Wijnbladh, Erik; Joensson, Bror Fredrik; Kumblad, Linda

2006-01-01

Studies of carbon fluxes in marine ecosystems are often done by using box model approaches with basin size boxes, or highly resolved 3D models, and an emphasis on the pelagic component of the ecosystem. Those approaches work well in the ocean proper, but can give rise to considerable problems when applied to coastal systems, because of the scale of certain ecological niches and the fact that benthic organisms are the dominant functional group of the ecosystem. In addition, 3D models require an extensive modeling effort. In this project, an intermediate approach based on a high resolution (20x20 m) GIS data-grid has been developed for the coastal ecosystem in the Laxemar area (Baltic Sea, Sweden) based on a number of different site investigations. The model has been developed in the context of a safety assessment project for a proposed nuclear waste repository, in which the fate of hypothetically released radionuclides from the planned repository is estimated. The assessment project requires not only a good understanding of the ecosystem dynamics at the site, but also quantification of stocks and flows of matter in the system. The data-grid was then used to set up a carbon budget describing the spatial distribution of biomass, primary production, net ecosystem production and thus where carbon sinks and sources are located in the area. From these results, it was clear that there was a large variation in ecosystem characteristics within the basins and, on a larger scale, that the inner areas are net producing and the outer areas net respiring, even in shallow phyto benthic communities. Benthic processes had a similar or larger influence on carbon fluxes as advective processes in inner areas, whereas the opposite appears to be true in the outer basins. As many radionuclides are expected to follow the pathways of organic matter in the environment, these findings enhance our abilities to realistically describe and predict their fate in the ecosystem

Identification of Arabidopsis candidate genes in response to biotic and abiotic stresses using comparative microarrays.

Directory of Open Access Journals (Sweden)

Arjun Sham

Full Text Available Plants have evolved with intricate mechanisms to cope with multiple environmental stresses. To adapt with biotic and abiotic stresses, plant responses involve changes at the cellular and molecular levels. The current study was designed to investigate the effects of combinations of different environmental stresses on the transcriptome level of Arabidopsis genome using public microarray databases. We investigated the role of cyclopentenones in mediating plant responses to environmental stress through TGA (TGACG motif-binding factor transcription factor, independently from jasmonic acid. Candidate genes were identified by comparing plants inoculated with Botrytis cinerea or treated with heat, salt or osmotic stress with non-inoculated or non-treated tissues. About 2.5% heat-, 19% salinity- and 41% osmotic stress-induced genes were commonly upregulated by B. cinerea-treatment; and 7.6%, 19% and 48% of genes were commonly downregulated by B. cinerea-treatment, respectively. Our results indicate that plant responses to biotic and abiotic stresses are mediated by several common regulatory genes. Comparisons between transcriptome data from Arabidopsis stressed-plants support our hypothesis that some molecular and biological processes involved in biotic and abiotic stress response are conserved. Thirteen of the common regulated genes to abiotic and biotic stresses were studied in detail to determine their role in plant resistance to B. cinerea. Moreover, a T-DNA insertion mutant of the Responsive to Dehydration gene (rd20, encoding for a member of the caleosin (lipid surface protein family, showed an enhanced sensitivity to B. cinerea infection and drought. Overall, the overlapping of plant responses to abiotic and biotic stresses, coupled with the sensitivity of the rd20 mutant, may provide new interesting programs for increased plant resistance to multiple environmental stresses, and ultimately increases its chances to survive. Future research

The Promoter of AtUSP Is Co-regulated by Phytohormones and Abiotic Stresses in Arabidopsis thaliana.

Science.gov (United States)

Bhuria, Monika; Goel, Parul; Kumar, Sanjay; Singh, Anil K

2016-01-01

Universal stress proteins (USPs) are known to be expressed in response to various abiotic stresses in a wide variety of organisms, such as bacteria, archaebacteria, protists, algae, fungi, plants, and animals. However, in plants, biological function of most of the USPs still remains obscure. In the present study, Arabidopsis USP gene ( AtUSP ) showed induction in response to abscisic acid (ABA) and various abiotic stresses viz . heat, dehydration, salt, osmotic, and cold stresses. Additionally, in silico analysis of AtUSP promoter identified several cis -elements responsive to phytohormones and abiotic stresses such as ABRE, ERE, DRE, and HSE, etc. To functionally validate the AtUSP promoter, the 1115 bp region of promoter was characterized under phytohormone and abiotic stress treatments. Deletion analysis of promoter was carried out by cloning the full length promoter (D0) and its three 5' deletion derivatives, D1 (964 bp), D2 (660 bp), and D3 (503 bp) upstream of the β-glucuronidase (GUS) reporter gene, which were then stably transformed in Arabidopsis plants. The AtUSP promoter (D0) showed minimal activity under non-stress conditions which was enhanced in response to phytohormone treatments (ABA and ACC) and abiotic stresses such as dehydration, heat, cold, salt, and osmotic stresses. The seedlings harboring D1 and D2 deletion fragments showed constitutive GUS expression even under control condition with increased activity almost under all the treatments. However, D3 seedlings exhibited complete loss of activity under control condition with induction under ACC treatment, dehydration, heat, oxidative, salt, and osmotic stresses. Thus, present study clearly showed that AtUSP promoter is highly inducible by phytohormones and multiple abiotic stresses and it can be exploited as stress inducible promoter to generate multi-stress tolerant crops with minimal effects on their other important traits.

Deep sequencing of subseafloor eukaryotic rRNA reveals active Fungi across marine subsurface provinces.

Directory of Open Access Journals (Sweden)

William Orsi

Full Text Available The deep marine subsurface is a vast habitat for microbial life where cells may live on geologic timescales. Because DNA in sediments may be preserved on long timescales, ribosomal RNA (rRNA is suggested to be a proxy for the active fraction of a microbial community in the subsurface. During an investigation of eukaryotic 18S rRNA by amplicon pyrosequencing, unique profiles of Fungi were found across a range of marine subsurface provinces including ridge flanks, continental margins, and abyssal plains. Subseafloor fungal populations exhibit statistically significant correlations with total organic carbon (TOC, nitrate, sulfide, and dissolved inorganic carbon (DIC. These correlations are supported by terminal restriction length polymorphism (TRFLP analyses of fungal rRNA. Geochemical correlations with fungal pyrosequencing and TRFLP data from this geographically broad sample set suggests environmental selection of active Fungi in the marine subsurface. Within the same dataset, ancient rRNA signatures were recovered from plants and diatoms in marine sediments ranging from 0.03 to 2.7 million years old, suggesting that rRNA from some eukaryotic taxa may be much more stable than previously considered in the marine subsurface.

Acetic acid production from marine algae. Progress report No. 2, September 30--December 31, 1977

Energy Technology Data Exchange (ETDEWEB)

1977-01-01

Preliminary results on the production of acetic acid from marine algae by anaerobic fermentation indicate that the rate is quite fast. First order rate constants of 0.77 day/sup -1/ were observed. This rate constant gives a half-life of less than one day. In other words, with a properly designed product removal system a five day retention time would yield 98% of theoretical conversion. Determination of the theoretical conversion of marine algae to acetic acid is the subject of much experimentation. The production of one acetic acid molecule (or equivalent in higher organic acids) for each three carbon atoms in the substrate has been achieved; but it is possible that with a mixed culture more than one acetic acid molecule may be produced for each three carbons in the substrate. Work is continuing to improve the yield of acetic acid from marine algae. Marine algae have been found to be rather low in carbon, but the carbon appears to be readily available for fermentation. It, therefore, lends itself to the production of higher value chemicals in relatively expensive equipment, where the rapid conversion rate is particularly cost effective. Fixed packed bed fermenters appear to be desirable for the production of liquid products which are inhibitory to the fermentation from coarse substrates. The inhibitory products may be removed from the fermentation by extraction during recirculation. This technique lends itself to either conventional processing or low capital processing of substrates which require long retention times.

Marine pollution studies in Pakistan by nuclear techniques

International Nuclear Information System (INIS)

Qureshi, R.M.; Mashiatullah, A.; Javed, T.; Tasneem, M.A.

2001-01-01

This paper describes a comprehensive study on pollution aspects of Manora Channel-Karachi Coast, Pakistan. In addition to use of conventional non-nuclear pollution monitoring tools (Coliform population, electrical conductivity, turbidity etc.), we evaluate the role of environmental stable carbon isotope technique (delta /sup 13/C of the total dissolved inorganic carbon-TDIC) to establish marine pollution transport scenario for Manora Channel. Data shows that tidal fluctuations play a key role in distribution of contamination inventories in Manora Channel. (author)

Generation of RNA in abiotic conditions.

Science.gov (United States)

di Mauro, Ernesto

Generation of RNA in abiotic conditions. Ernesto Di Mauro Dipartimento di Genetica Bi-ologia Molecolare, Universit` "Sapienza" Roma, Italy. a At least four conditions must be satisfied for the spontaneous generation of (pre)-genetic poly-mers: 1) availability of precursors that are activated enough to spontaneously polymerize. Preliminary studies showed that (a) nucleic bases and acyclonucleosides can be synthesized from formamide H2NCOH by simply heating with prebiotically available mineral catalysts [last reviewed in (1)], and that b) nucleic bases can be phosphorylated in every possible posi-tion [2'; 3'; 5'; cyclic 2',3'; cyclic 3',5' (2)]. The higher stability of the cyclic forms allows their accumulation. 2) A polymerization mechanism. A reaction showing the formation of RNA polymers starting from prebiotically plausible precursors (3',5' cyclic GMP and 3', 5'cyclic AMP) was recently reported (3). Polymerization in these conditions is thermodynamically up-hill and an equilibrium is attained that limits the maximum length of the polymer produced to about 40 nucleotides for polyG and 100 nucleotides for polyA. 3) Ligation of the synthesized oligomers. If this type of reaction could occur according to a terminal-joining mechanism and could generate canonical 3',5' phosphodiester bonds, exponential growth would be obtained of the generated oligomers. This type of reaction has been reported (4) , limited to homogeneous polyA sequences and leading to the production of polyA dimers and tetramers. What is still missing are: 4) mechanisms that provide the proof of principle for the generation of sequence complexity. We will show evidence for two mechanisms providing this proof of principle for simple complementary sequences. Namely: abiotic sequence complementary-driven terminal ligation and sequence-complementary terminal growth. In conclusion: all the steps leading to the generation of RNA in abiotic conditions are satisfied. (1) R Saladino, C Crestini, F

Minerals Masquerading As Enzymes: Abiotic Oxidation Of Soil Organic Matter In An Iron-Rich Humid Tropical Forest Soil

Science.gov (United States)

Hall, S. J.; Silver, W. L.

2010-12-01

Oxidative reactions play an important role in decomposing soil organic matter fractions that resist hydrolytic degradation, and fundamentally affect the cycling of recalcitrant soil carbon across ecosystems. Microbial extracellular oxidative enzymes (e.g. lignin peroxidases and laccases) have been assumed to provide a dominant role in catalyzing soil organic matter oxidation, while other potential oxidative mechanisms remain poorly explored. Here, we show that abiotic reactions mediated by the oxidation of ferrous iron (Fe(II)) could explain high potential oxidation rates in humid tropical forest soils, which often contain high concentrations of Fe(II) and experience rapid redox fluctuations between anaerobic and aerobic conditions. These abiotic reactions could provide an additional mechanism to explain high rates of decomposition in these ecosystems, despite frequent oxygen deficits. We sampled humid tropical forest soils in Puerto Rico, USA from various topographic positions, ranging from well-drained ridges to riparian valleys that experience broad fluctuations in redox potential. We measured oxidative activity by adding the model humic compound L-DOPA to soil slurries, followed by colorimetric measurements of the supernatant solution over time. Dilute hydrogen peroxide was added to a subset of slurries to measure peroxidative activity. We found that oxidative and peroxidative activity correlated positively with soil Fe(II) concentrations, counter to prevailing theory that low redox potential should suppress oxidative enzymes. Boiling or autoclaving sub-samples of soil slurries to denature any enzymes present typically increased peroxidative activity and did not eliminate oxidative activity, further suggesting the importance of an abiotic mechanism. We found substantial differences in the oxidation products of the L-DOPA substrate generated by our soil slurries in comparison with oxidation products generated by a purified enzyme (mushroom tyrosinase

Tracing biogeochemical subsidies from glacier runoff into Alaska's coastal marine food webs

Science.gov (United States)

Arimitsu, Mayumi L.; Hobson, Keith A.; Webber, D'Arcy N.; Piatt, John F.; Hood, Eran W.; Fellman, Jason B.

2018-01-01

Nearly half of the freshwater discharge into the Gulf of Alaska originates from landscapes draining glacier runoff, but the influence of the influx of riverine organic matter on the trophodynamics of coastal marine food webs is not well understood. We quantified the ecological impact of riverine organic matter subsidies to glacier-marine habitats by developing a multi-trophic level Bayesian three-isotope mixing model. We utilized large gradients in stable (δ13C, δ15N, δ2H) and radiogenic (Δ14C) isotopes that trace riverine and marine organic matter sources as they are passed from lower to higher trophic levels in glacial-marine habitats. We also compared isotope ratios between glacial-marine and more oceanic habitats. Based on isotopic measurements of potential baseline sources, ambient water and tissues of marine consumers, estimates of the riverine organic matter source contribution to upper trophic-level species including fish and seabirds ranged from 12% to 44%. Variability in resource use among similar taxa corresponded to variation in species distribution and life histories. For example, riverine organic matter assimilation by the glacier-nesting seabirds Kittlitz's murrelet (Brachyramphus brevirostris) was greater than that of the forest-nesting marbled murrelet (B. marmoratus). The particulate and dissolved organic carbon in glacial runoff and near surface coastal waters was aged (12100–1500 years BP 14C-age) but dissolved inorganic carbon and biota in coastal waters were young (530 years BP 14C-age to modern). Thus terrestrial-derived subsidies in marine food webs were primarily composed of young organic matter sources released from glacier ecosystems and their surrounding watersheds. Stable isotope compositions also revealed a divergence in food web structure between glacial-marine and oceanic sites. This work demonstrates linkages between terrestrial and marine ecosystems, and facilitates a greater understanding of how climate-driven changes

Genetic and Computational Approaches for Studying Plant Development and Abiotic Stress Responses Using Image-Based Phenotyping

Science.gov (United States)

Campbell, M. T.; Walia, H.; Grondin, A.; Knecht, A.

2017-12-01

The development of abiotic stress tolerant crops (i.e. drought, salinity, or heat stress) requires the discovery of DNA sequence variants associated with stress tolerance-related traits. However, many traits underlying adaptation to abiotic stress involve a suite of physiological pathways that may be induced at different times throughout the duration of stress. Conventional single-point phenotyping approaches fail to fully capture these temporal responses, and thus downstream genetic analysis may only identify a subset of the genetic variants that are important for adaptation to sub-optimal environments. Although genomic resources for crops have advanced tremendously, the collection of phenotypic data for morphological and physiological traits is laborious and remains a significant bottleneck in bridging the phenotype-genotype gap. In recent years, the availability of automated, image-based phenotyping platforms has provided researchers with an opportunity to collect morphological and physiological traits non-destructively in a highly controlled environment. Moreover, these platforms allow abiotic stress responses to be recorded throughout the duration of the experiment, and have facilitated the use of function-valued traits for genetic analyses in major crops. We will present our approaches for addressing abiotic stress tolerance in cereals. This talk will focus on novel open-source software to process and extract biological meaningful data from images generated from these phenomics platforms. In addition, we will discuss the statistical approaches to model longitudinal phenotypes and dissect the genetic basis of dynamic responses to these abiotic stresses throughout development.

Molecular and physiological responses to abiotic stress in forest trees and their relevance to tree improvement.

Science.gov (United States)

Harfouche, Antoine; Meilan, Richard; Altman, Arie

2014-11-01

Abiotic stresses, such as drought, salinity and cold, are the major environmental stresses that adversely affect tree growth and, thus, forest productivity, and play a major role in determining the geographic distribution of tree species. Tree responses and tolerance to abiotic stress are complex biological processes that are best analyzed at a systems level using genetic, genomic, metabolomic and phenomic approaches. This will expedite the dissection of stress-sensing and signaling networks to further support efficient genetic improvement programs. Enormous genetic diversity for stress tolerance exists within some forest-tree species, and due to advances in sequencing technologies the molecular genetic basis for this diversity has been rapidly unfolding in recent years. In addition, the use of emerging phenotyping technologies extends the suite of traits that can be measured and will provide us with a better understanding of stress tolerance. The elucidation of abiotic stress-tolerance mechanisms will allow for effective pyramiding of multiple tolerances in a single tree through genetic engineering. Here we review recent progress in the dissection of the molecular basis of abiotic stress tolerance in forest trees, with special emphasis on Populus, Pinus, Picea, Eucalyptus and Quercus spp. We also outline practices that will enable the deployment of trees engineered for abiotic stress tolerance to land owners. Finally, recommendations for future work are discussed. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

High Variability in Cellular Stoichiometry of Carbon, Nitrogen, and Phosphorus Within Classes of Marine Eukaryotic Phytoplankton Under Sufficient Nutrient Conditions.

Science.gov (United States)

Garcia, Nathan S; Sexton, Julie; Riggins, Tracey; Brown, Jeff; Lomas, Michael W; Martiny, Adam C

2018-01-01

Current hypotheses suggest that cellular elemental stoichiometry of marine eukaryotic phytoplankton such as the ratios of cellular carbon:nitrogen:phosphorus (C:N:P) vary between phylogenetic groups. To investigate how phylogenetic structure, cell volume, growth rate, and temperature interact to affect the cellular elemental stoichiometry of marine eukaryotic phytoplankton, we examined the C:N:P composition in 30 isolates across 7 classes of marine phytoplankton that were grown with a sufficient supply of nutrients and nitrate as the nitrogen source. The isolates covered a wide range in cell volume (5 orders of magnitude), growth rate (temperature (2-24°C). Our analysis indicates that C:N:P is highly variable, with statistical model residuals accounting for over half of the total variance and no relationship between phylogeny and elemental stoichiometry. Furthermore, our data indicated that variability in C:P, N:P, and C:N within Bacillariophyceae (diatoms) was as high as that among all of the isolates that we examined. In addition, a linear statistical model identified a positive relationship between diatom cell volume and C:P and N:P. Among all of the isolates that we examined, the statistical model identified temperature as a significant factor, consistent with the temperature-dependent translation efficiency model, but temperature only explained 5% of the total statistical model variance. While some of our results support data from previous field studies, the high variability of elemental ratios within Bacillariophyceae contradicts previous work that suggests that this cosmopolitan group of microalgae has consistently low C:P and N:P ratios in comparison with other groups.

Abiotic stressors and stress responses

DEFF Research Database (Denmark)

Sulmon, Cecile; Van Baaren, Joan; Cabello-Hurtado, Francisco

2015-01-01

Abstract Organisms are regularly subjected to abiotic stressors related to increasing anthropogenic activities, including chemicals and climatic changes that induce major stresses. Based on various key taxa involved in ecosystem functioning (photosynthetic microorganisms, plants, invertebrates), we...... review how organisms respond and adapt to chemical- and temperature-induced stresses from molecular to population level. Using field-realistic studies, our integrative analysis aims to compare i) how molecular and physiological mechanisms related to protection, repair and energy allocation can impact...... life history traits of stressed organisms, and ii) to what extent trait responses influence individual and population responses. Common response mechanisms are evident at molecular and cellular scales but become rather difficult to define at higher levels due to evolutionary distance and environmental...

Novel perspectives for the engineering of abiotic stress tolerance in plants.

Science.gov (United States)

Cabello, Julieta V; Lodeyro, Anabella F; Zurbriggen, Matias D

2014-04-01

Adverse environmental conditions pose serious limitations to agricultural production. Classical biotechnological approaches towards increasing abiotic stress tolerance focus on boosting plant endogenous defence mechanisms. However, overexpression of regulatory elements or effectors is usually accompanied by growth handicap and yield penalties due to crosstalk between developmental and stress-response networks. Herein we offer an overview on novel strategies with the potential to overcome these limitations based on the engineering of regulatory systems involved in the fine-tuning of the plant response to environmental hardships, including post-translational modifications, small RNAs, epigenetic control of gene expression and hormonal networks. The development and application of plant synthetic biology tools and approaches will add new functionalities and perspectives to genetic engineering programs for enhancing abiotic stress tolerance. Copyright © 2013 Elsevier Ltd. All rights reserved.

ROS-mediated abiotic stress-induced programmed cell death in plants

NARCIS (Netherlands)

Petrov, Veselin; Hille, Jacob; Mueller-Rober, Bernd; Gechev, Tsanko S.

2015-01-01

During the course of their ontogenesis plants are continuously exposed to a large variety of abiotic stress factors which can damage tissues and jeopardize the survival of the organism unless properly countered. While animals can simply escape and thus evade stressors, plants as sessile organisms

Factors controlling the compositional variations among the marine and non-marine black shales from Egypt

Energy Technology Data Exchange (ETDEWEB)

Baioumy, Hassan M. [Central Metallurgical R and D Institute, PO Box 87 Helwan, Cairo (Egypt); Ismael, Ismael S. [Faculty of Science, Suez Canal University, Suez (Egypt)

2010-07-01

Non-marine (Jurassic) and marine (Cretaceous) black shales from Egypt were subjected to mineralogical and geochemical analyses to examine the controlling factors of their compositional variations. Non-marine black shales are composed of kaolinite and quartz with traces of gypsum, illite, calcite, feldspars, and dolomite, while marine black shales from the Red Sea area are composed of smectite, kaolinite, quartz, calcite, and dolomite with traces of feldspars. Abu Tartur marine black shales are composed of smectite and quartz with traces of feldspars and gypsum. Non-marine black shales show considerably higher Nb, Ta, Hf, and Zr contents and Th/Yb ratios compared to the marine black shales. On the other hand, marine black shales show considerably higher Cr, V, and Zn contents with positive correlations between these elements and organic carbon (C{sub org.}){sub .} Red Sea black shales have higher Ni/Co, V/Cr, and U/Al ratios. Chondrite normalized values of the medium and heavy rare earth elements (MREEs and HREEs, respectively) are higher in the non-marine black shales compared to the marine black shales. Pyrite from non-marine black shales is characterized by high positive {delta}{sup 34}S isotope values (average of + 9.3 permille). Pyrite from Red Sea black shales has low negative {delta}{sup 34}S values (average of -16.7 permille), pyrite from black shales of the lower member of the Duwi Formation has positive {delta}{sup 34}S values (average of 5.8 permille), while pyrite from marine black shales of the middle member has negative {delta}{sup 34}S values (average of -0.83 permille). Source area composition, weathering conditions, depositional environments, and type of organic matter are considered to be the probable controlling factors of these variations. The more felsic constituents in the source area of non-marine black shales is responsible for the relatively high Nb, Ta, Hf, and Zr contents and Th/Yb ratio. Relatively high kaolinite contents and Chemical

The impact of biotic/abiotic interfaces in mineral nutrient cycling: A study of soils of the Santa Cruz chronosequence, California

Science.gov (United States)

White, A.F.; Schulz, M.S.; Vivit, D.V.; Bullen, T.D.; Fitzpatrick, J.

2012-01-01

Biotic/abiotic interactions between soil mineral nutrients and annual grassland vegetation are characterized for five soils in a marine terrace chronosequence near Santa Cruz, California. A Mediterranean climate, with wet winters and dry summers, controls the annual cycle of plant growth and litter decomposition, resulting in net above-ground productivities of 280-600gm -2yr -1. The biotic/abiotic (A/B) interface separates seasonally reversible nutrient gradients, reflecting biological cycling in the shallower soils, from downward chemical weathering gradients in the deeper soils. The A/B interface is pedologically defined by argillic clay horizons centered at soil depths of about one meter which intensify with soil age. Below these horizons, elevated solute Na/Ca, Mg/Ca and Sr/Ca ratios reflect plagioclase and smectite weathering along pore water flow paths. Above the A/B interface, lower cation ratios denote temporal variability due to seasonal plant nutrient uptake and litter leaching. Potassium and Ca exhibit no seasonal variability beneath the A/B interface, indicating closed nutrient cycling within the root zone, whereas Mg variability below the A/B interface denotes downward leakage resulting from higher inputs of marine aerosols and lower plant nutrient requirements.The fraction of a mineral nutrient annually cycled through the plants, compared to that lost from pore water discharge, is defined their respective fluxes F j,plants=q j,plants/(q j,plants+q j,discharge) with average values for K and Ca (F K,plants=0.99; F Ca,plants=0.93) much higher than for Mg and Na (F Mg,plants 0.64; F Na,plants=0.28). The discrimination against Rb and Sr by plants is described by fractionation factors (K Sr/Ca=0.86; K Rb/K=0.83) which are used in Rayleigh fractionation-mixing calculations to fit seasonal patterns in solute K and Ca cycling. K Rb/K and K24Mg/22Mg values (derived from isotope data in the literature) fall within fractionation envelopes bounded by inputs from

Identification of the AQP members involved in abiotic stress responses from Arabidopsis.

Science.gov (United States)

Feng, Zhi-Juan; Xu, Sheng-Chun; Liu, Na; Zhang, Gu-Wen; Hu, Qi-Zan; Xu, Zhao-Shi; Gong, Ya-Ming

2018-03-10

Aquaporins (AQPs) constitute a highly diverse family of water channel proteins that play crucial biological functions in plant growth and development and stress physiology. In Arabidopsis, 35 AQPs are classified into four subfamilies (PIPs, TIPs, NIPs and SIPs). However, knowledge about the roles of different subfamily AQPs remains limited. Here, we explored the chromosomal location, gene structure and expression patterns of all AQPs in different tissues or under different abiotic stresses based on available microarray data. Tissue expression analysis showed that different AQPs had various expression patterns in tissues (root, leaf, flower and seed). Expression profiles under stress conditions revealed that most AQPs were responsive to osmotic, salt and drought stresses. Phenotypic and physiological identification showed that Tip2;2 loss-of-function mutant exhibited less sensitive to abiotic stresses (mannitol, NaCl and PEG) compared with wild-type, as evident by analysis of germination rate, root growth, survival rate, ion leakage, malondialdehyde (MDA) and proline contents. Mutant of TIP2;2 modulated the transcript levels of SOS1, SOS2, SOS3, DREB1A, DREB2A and P5CS1, under abiotic stress conditions. This study provides a basis for further functional identification of stress-related candidate AQPs in Arabidopsis. Copyright © 2017 Elsevier B.V. All rights reserved.

Rubisco Activase Is Also a Multiple Responder to Abiotic Stresses in Rice.

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Yue Chen

Full Text Available Ribulose-1,5-bisphosphate carboxylase/oxygenase activase (RCA is a nuclear gene that encodes a chloroplast protein that plays an important role in photosynthesis. Some reports have indicated that it may play a role in acclimation to different abiotic stresses. In this paper, we analyzed the stress-responsive elements in the 2.0 kb 5'-upstream regions of the RCA gene promoter and the primary, secondary and tertiary structure of the protein. We identified some cis-elements of multiple stress-related components in the RCA promoter. Amino acid and evolution analyses showed that the RCA protein had conserved regions between different species; however, the size and type varied. The secondary structures, binding sites and tertiary structures of the RCA proteins were also different. This might reflect the differences in the transcription and translation levels of the two RCA isoforms during adaptation to different abiotic stresses. Although both the transcription and translation levels of RCA isoforms in the rice leaves increased under various stresses, the large isoform was increased more significantly in the chloroplast stroma and thylakoid. It can be concluded that RCA, especially RCAL, is also a multiple responder to abiotic stresses in rice, which provides new insights into RCA functions.

Microbially mediated transformations of phosphorus in the sea: new views of an old cycle.

Science.gov (United States)

Karl, David M

2014-01-01

Phosphorus (P) is a required element for life. Its various chemical forms are found throughout the lithosphere and hydrosphere, where they are acted on by numerous abiotic and biotic processes collectively referred to as the P cycle. In the sea, microorganisms are primarily responsible for P assimilation and remineralization, including recently discovered P reduction-oxidation bioenergetic processes that add new complexity to the marine microbial P cycle. Human-induced enhancement of the global P cycle via mining of phosphate-bearing rock will likely influence the pace of P-cycle dynamics, especially in coastal marine habitats. The inextricable link between the P cycle and cycles of other bioelements predicts future impacts on, for example, nitrogen fixation and carbon dioxide sequestration. Additional laboratory and field research is required to build a comprehensive understanding of the marine microbial P cycle.

Effect of plant growth hormones and abiotic stresses on germination ...

African Journals Online (AJOL)

Phosphatases are widely found in plants having intracellular and extracellular activities. Phosphatases are believed to be important for phosphorous scavenging and remobilization in plants, but its role in adaptation to abiotic stresses and growth hormones at germination level has not been critically evaluated. To address ...

Progress and challenges for abiotic stress proteomics of crop plants.

Science.gov (United States)

Barkla, Bronwyn J; Vera-Estrella, Rosario; Pantoja, Omar

2013-06-01

Plants are continually challenged to recognize and respond to adverse changes in their environment to avoid detrimental effects on growth and development. Understanding the mechanisms that crop plants employ to resist and tolerate abiotic stress is of considerable interest for designing agriculture breeding strategies to ensure sustainable productivity. The application of proteomics technologies to advance our knowledge in crop plant abiotic stress tolerance has increased dramatically in the past few years as evidenced by the large amount of publications in this area. This is attributed to advances in various technology platforms associated with MS-based techniques as well as the accessibility of proteomics units to a wider plant research community. This review summarizes the work which has been reported for major crop plants and evaluates the findings in context of the approaches that are widely employed with the aim to encourage broadening the strategies used to increase coverage of the proteome. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Species associations overwhelm abiotic conditions to dictate the structure and function of wood-decay fungal communities.

Science.gov (United States)

Maynard, Daniel S; Covey, Kristofer R; Crowther, Thomas W; Sokol, Noah W; Morrison, Eric W; Frey, Serita D; van Diepen, Linda T A; Bradford, Mark A

2018-04-01

Environmental conditions exert strong controls on the activity of saprotrophic microbes, yet abiotic factors often fail to adequately predict wood decomposition rates across broad spatial scales. Given that species interactions can have significant positive and negative effects on wood-decay fungal activity, one possibility is that biotic processes serve as the primary controls on community function, with abiotic controls emerging only after species associations are accounted for. Here we explore this hypothesis in a factorial field warming- and nitrogen-addition experiment by examining relationships among wood decomposition rates, fungal activity, and fungal community structure. We show that functional outcomes and community structure are largely unrelated to abiotic conditions, with microsite and plot-level abiotic variables explaining at most 19% of the total variability in decomposition and fungal activity, and 2% of the variability in richness and evenness. In contrast, taxonomic richness, evenness, and species associations (i.e., co-occurrence patterns) exhibited strong relationships with community function, accounting for 52% of the variation in decomposition rates and 73% in fungal activity. A greater proportion of positive vs. negative species associations in a community was linked to strong declines in decomposition rates and richness. Evenness emerged as a key mediator between richness and function, with highly even communities exhibiting a positive richness-function relationship and uneven communities exhibiting a negative or null response. These results suggest that community-assembly processes and species interactions are important controls on the function of wood-decay fungal communities, ultimately overwhelming substantial differences in abiotic conditions. © 2018 by the Ecological Society of America.

Improved tolerance to various abiotic stresses in transgenic sweet potato (Ipomoea batatas expressing spinach betaine aldehyde dehydrogenase.

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Weijuan Fan

Full Text Available Abiotic stresses are critical delimiters for the increased productivity and cultivation expansion of sweet potato (Ipomoea batatas, a root crop with worldwide importance. The increased production of glycine betaine (GB improves plant tolerance to various abiotic stresses without strong phenotypic changes, providing a feasible approach to improve stable yield production under unfavorable conditions. The gene encoding betaine aldehyde dehydrogenase (BADH is involved in the biosynthesis of GB in plants, and the accumulation of GB by the heterologous overexpression of BADH improves abiotic stress tolerance in plants. This study is to improve sweet potato, a GB accumulator, resistant to multiple abiotic stresses by promoted GB biosynthesis. A chloroplastic BADH gene from Spinacia oleracea (SoBADH was introduced into the sweet potato cultivar Sushu-2 via Agrobacterium-mediated transformation. The overexpression of SoBADH in the transgenic sweet potato improved tolerance to various abiotic stresses, including salt, oxidative stress, and low temperature. The increased BADH activity and GB accumulation in the transgenic plant lines under normal and multiple environmental stresses resulted in increased protection against cell damage through the maintenance of cell membrane integrity, stronger photosynthetic activity, reduced reactive oxygen species (ROS production, and induction or activation of ROS scavenging by the increased activity of free radical-scavenging enzymes. The increased proline accumulation and systemic upregulation of many ROS-scavenging genes in stress-treated transgenic plants also indicated that GB accumulation might stimulate the ROS-scavenging system and proline biosynthesis via an integrative mechanism. This study demonstrates that the enhancement of GB biosynthesis in sweet potato is an effective and feasible approach to improve its tolerance to multiple abiotic stresses without causing phenotypic defects. This strategy for trait

Radiocarbon (14C) Constraints On The Fraction Of Refractory Dissolved Organic Carbon In Primary Marine Aerosol From The Northwest Atlantic

Science.gov (United States)

Beaupre, S. R.; Kieber, D. J.; Keene, W. C.; Long, M. S.; Frossard, A. A.; Kinsey, J. D.; Duplessis, P.; Chang, R.; Maben, J. R.; Lu, X.; Zhu, Y.; Bisgrove, J.

2017-12-01

Nearly all organic carbon in seawater is dissolved (DOC), with more than 95% considered refractory based on modeled average lifetimes ( 16,000 years) and characteristically old bulk radiocarbon (14C) ages (4000 - 6000 years) that exceed the timescales of overturning circulation. Although this refractory dissolved organic carbon (RDOC) is present throughout the oceans as a major reservoir of the global carbon cycle, its sources and sinks are poorly constrained. Recently, RDOC was proposed to be removed from the oceans through adsorption onto the surfaces of rising bubble plumes produced by breaking waves, ejection into the atmosphere via bubble bursting as a component of primary marine aerosol (PMA), and subsequent oxidation in the atmosphere. To test this mechanism, we used natural abundance 14C (5730 ± 40 yr half-life) to trace the fraction of RDOC in PMA produced in a high capacity generator at two biologically-productive and two oligotrophic hydrographic stations in the Northwest Atlantic Ocean during a research cruise aboard the R/V Endeavor (Sep - Oct 2016). The 14C signatures of PMA separately generated day and night from near-surface (5 m) and deep (2500 m) seawater were compared with corresponding 14C signatures in seawater of near-surface dissolved inorganic carbon (DIC, a proxy for recently produced organic matter), bulk deep DOC (a proxy for RDOC), and near-surface bulk DOC. Results constrain the selectivity of PMA formation from RDOC in natural mixtures of recently produced and refractory DOC. The implications of these results for PMA formation and RDOC biogeochemistry will be discussed.

Study of organic chlorine in soils and formation in biotic and abiotic conditions

International Nuclear Information System (INIS)

Osswald, Aurelie

2016-01-01

Chlorine has long been considered as the predominantly chlorine form present in the environment. However, recent studies have shown that chlorine is retained in the soil as an organic form and is formed by a natural process of chlorination mainly from the microbial activity of the soil still poorly documented. The aim of this study is to estimate the organic and inorganic forms of chlorine in contrasting soil and highlight the evolution of these forms according to certain environmental parameters or terms of incubations and to the activity of microorganisms. For this, the organo-mineral horizons of contrasting soil were studied (i) in situ: The amounts of chlorine and physico-chemical and microbiological parameters of soil were measured; (ii) in two experimental devices incubations under different conditions. Measurements of chlorine levels between the beginning and the end of the first experiment were measured by AOX analyzer. For the second experiment, the soil was previously enriched with Na 37 Cl and 37 Cl levels were measured by HR ICP MS. Soil samples from these incubations were analyzed by Xanes spectrometry to identify the speciation of chlorine forms in soils. Soil non-extractable organic chlorine contents represent almost all of the chlorine. The parameters that influence the distribution of chlorine contents in soils correspond to vegetation cover, pH, organic carbon content and quantities of microorganisms. The chlorine contents measured by AOX analyzer and by HR ICP MS highlight an organic chlorine formation over time in relation to the microorganisms in the soil. The measures carried out by HR ICP MS show also an organic chlorine formation in abiotic conditions. Conversely, XANES spectrometry measurements have shown any organic chlorine formation. In conclusion, the parameters that influence the distribution of chlorine contents in soils have been targeted. Similarly, the microbial origin of the chlorination process has been demonstrated, although a

Mangrove litter production and organic carbon pools in the ...

African Journals Online (AJOL)

Mngazana Estuary is an important source of mangrove litter and POC for the adjacent marine environment, possibly sustaining nearshore food webs. Keywords: Dissolved organic carbon, harvesting, litter production, mangroves, particulate organic carbon, Rhizophora mucronata, South Africa African Journal of Aquatic ...

Major role of marine vegetation on the oceanic carbon cycle

NARCIS (Netherlands)

Duarte, C.M.; Middelburg, J.J.; Caraco, N.

2005-01-01

The carbon burial in vegetated sediments, ignored in past assessments of carbon burial in the ocean, was evaluated using a bottom-up approach derived from upscaling a compilation of published individual estimates of carbon burial in vegetated habitats (seagrass meadows, salt marshes and mangrove

Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress.

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Henry D Priest

Full Text Available Brachypodium distachyon is a close relative of many important cereal crops. Abiotic stress tolerance has a significant impact on productivity of agriculturally important food and feedstock crops. Analysis of the transcriptome of Brachypodium after chilling, high-salinity, drought, and heat stresses revealed diverse differential expression of many transcripts. Weighted Gene Co-Expression Network Analysis revealed 22 distinct gene modules with specific profiles of expression under each stress. Promoter analysis implicated short DNA sequences directly upstream of module members in the regulation of 21 of 22 modules. Functional analysis of module members revealed enrichment in functional terms for 10 of 22 network modules. Analysis of condition-specific correlations between differentially expressed gene pairs revealed extensive plasticity in the expression relationships of gene pairs. Photosynthesis, cell cycle, and cell wall expression modules were down-regulated by all abiotic stresses. Modules which were up-regulated by each abiotic stress fell into diverse and unique gene ontology GO categories. This study provides genomics resources and improves our understanding of abiotic stress responses of Brachypodium.

A statistical approach to the interpretation of aliphatic hydrocarbon distributions in marine sediments

Science.gov (United States)

Rapp, J.B.

1991-01-01

Q-mode factor analysis was used to quantitate the distribution of the major aliphatic hydrocarbon (n-alkanes, pristane, phytane) systems in sediments from a variety of marine environments. The compositions of the pure end members of the systems were obtained from factor scores and the distribution of the systems within each sample was obtained from factor loadings. All the data, from the diverse environments sampled (estuarine (San Francisco Bay), fresh-water (San Francisco Peninsula), polar-marine (Antarctica) and geothermal-marine (Gorda Ridge) sediments), were reduced to three major systems: a terrestrial system (mostly high molecular weight aliphatics with odd-numbered-carbon predominance), a mature system (mostly low molecular weight aliphatics without predominance) and a system containing mostly high molecular weight aliphatics with even-numbered-carbon predominance. With this statistical approach, it is possible to assign the percentage contribution from various sources to the observed distribution of aliphatic hydrocarbons in each sediment sample. ?? 1991.

Thallium isotope evidence for a permanent increase in marine organic carbon export in the early Eocene

Science.gov (United States)

Nielsen, S.G.; Mar-Gerrison, S.; Gannoun, A.; LaRowe, D.; Klemm, V.; Halliday, A.N.; Burton, K.W.; Hein, J.R.

2009-01-01

The first high resolution thallium (Tl) isotope records in two ferromanganese crusts (Fe-Mn crusts), CD29 and D11 from the Pacific Ocean are presented. The crusts record pronounced but systematic changes in 205Tl/203Tl that are unlikely to reflect diagenetic overprinting or changes in isotope fractionation between seawater and Fe-Mn crusts. It appears more likely that the Fe-Mn crusts track the Tl isotope composition of seawater over time. The present-day oceanic residence time of Tl is estimated to be about 20,000??yr, such that the isotopic composition should reflect ocean-wide events. New and published Os isotope data are used to construct age models for these crusts that are consistent with each other and significantly different from previous age models. Application of these age models reveals that the Tl isotope composition of seawater changed systematically between ~ 55??Ma and ~ 45??Ma. Using a simple box model it is shown that the present day Tl isotope composition of seawater depends almost exclusively on the ratio between the two principal output fluxes of marine Tl. These fluxes are the rate of removal of Tl from seawater via scavenging by authigenic Fe-Mn oxyhydroxide precipitation and the uptake rate of Tl during low temperature alteration of oceanic crust. It is highly unlikely that the latter has changed greatly. Therefore, assuming that the marine Tl budget has also not changed significantly during the Cenozoic, the low 205Tl/203Tl during the Paleocene is best explained by a more than four-fold higher sequestration of Tl by Fe-Mn oxyhydroxides compared with at the present day. The calculated Cenozoic Tl isotopic seawater curve displays a striking similarity to that of S, providing evidence that both systems may have responded to the same change in the marine environment. A plausible explanation is a marked and permanent increase in organic carbon export from ~ 55??Ma to ~ 45??Ma, which led to higher pyrite burial rates and a significantly reduced

Induced Systemic Tolerance to Multiple Stresses Including Biotic and Abiotic Factors by Rhizobacteria

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Sung-Je Yoo

2017-06-01

Full Text Available Recently, global warming and drastic climate change are the greatest threat to the world. The climate change can affect plant productivity by reducing plant adaptation to diverse environments including frequent high temperature; worsen drought condition and increased pathogen transmission and infection. Plants have to survive in this condition with a variety of biotic (pathogen/pest attack and abiotic stress (salt, high/low temperature, drought. Plants can interact with beneficial microbes including plant growth-promoting rhizobacteria, which help plant mitigate biotic and abiotic stress. This overview presents that rhizobacteria plays an important role in induced systemic resistance (ISR to biotic stress or induced systemic tolerance (IST to abiotic stress condition; bacterial determinants related to ISR and/or IST. In addition, we describe effects of rhizobacteria on defense/tolerance related signal pathway in plants. We also review recent information including plant resistance or tolerance against multiple stresses (bioticabiotic. We desire that this review contribute to expand understanding and knowledge on the microbial application in a constantly varying agroecosystem, and suggest beneficial microbes as one of alternative environment-friendly application to alleviate multiple stresses.

Bacillus amyloliquefaciens Confers Tolerance to Various Abiotic Stresses and Modulates Plant Response to Phytohormones through Osmoprotection and Gene Expression Regulation in Rice

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Shalini Tiwari

2017-08-01

Full Text Available Being sessile in nature, plants have to withstand various adverse environmental stress conditions including both biotic and abiotic stresses. Comparatively, abiotic stresses such as drought, salinity, high temperature, and cold pose major threat to agriculture by negatively impacting plant growth and yield worldwide. Rice is one of the most widely consumed staple cereals across the globe, the production and productivity of which is also severely affected by different abiotic stresses. Therefore, several crop improvement programs are directed toward developing stress tolerant rice cultivars either through marker assisted breeding or transgenic technology. Alternatively, some known rhizospheric competent bacteria are also known to improve plant growth during abiotic stresses. A plant growth promoting rhizobacteria (PGPR, Bacillus amyloliquefaciens NBRI-SN13 (SN13 was previously reported by our lab to confer salt stress tolerance to rice seedlings. However, the present study investigates the role of SN13 in ameliorating various abiotic stresses such as salt, drought, desiccation, heat, cold, and freezing on a popular rice cv. Saryu-52 under hydroponic growth conditions. Apart from this, seedlings were also exogenously supplied with abscisic acid (ABA, salicylic acid (SA, jasmonic acid (JA and ethephon (ET to study the role of SN13 in phytohormone-induced stress tolerance as well as its role in abiotic and biotic stress cross-talk. All abiotic stresses and phytohormone treatments significantly affected various physiological and biochemical parameters like membrane integrity and osmolyte accumulation. SN13 also positively modulated stress-responsive gene expressions under various abiotic stresses and phytohormone treatments suggesting its multifaceted role in cross-talk among stresses and phytohormones in response to PGPR. To the best of our knowledge, this is the first report on detailed analysis of plant growth promotion and stress alleviation by a

A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes

DEFF Research Database (Denmark)

Weitz, Joshua S.; Stock, Charles A.; Wilhelm, Steven W.

2015-01-01

Viral lysis of microbial hosts releases organic matter that can then be assimilated by nontargeted microorganisms. Quantitative estimates of virus-mediated recycling of carbon in marine waters, first established in the late 1990s, were originally extrapolated from marine host and virus densities......, host carbon content and inferred viral lysis rates. Yet, these estimates did not explicitly incorporate the cascade of complex feedbacks associated with virus-mediated lysis. To evaluate the role of viruses in shaping community structure and ecosystem functioning, we extend dynamic multitrophic...

Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling.

Science.gov (United States)

Lidbury, Ian D E A; Murrell, J Colin; Chen, Yin

2015-03-01

Bacteria of the marine Roseobacter clade are characterised by their ability to utilise a wide range of organic and inorganic compounds to support growth. Trimethylamine (TMA) and trimethylamine N-oxide (TMAO) are methylated amines (MA) and form part of the dissolved organic nitrogen pool, the second largest source of nitrogen after N2 gas, in the oceans. We investigated if the marine heterotrophic bacterium, Ruegeria pomeroyi DSS-3, could utilise TMA and TMAO as a supplementary energy source and whether this trait had any beneficial effect on growth. In R. pomeroyi, catabolism of TMA and TMAO resulted in the production of intracellular ATP which in turn helped to enhance growth rate and growth yield as well as enhancing cell survival during prolonged energy starvation. Furthermore, the simultaneous use of two different exogenous energy sources led to a greater enhancement of chemoorganoheterotrophic growth. The use of TMA and TMAO primarily as an energy source resulted in the remineralisation of nitrogen in the form of ammonium, which could cross feed into another bacterium. This study provides greater insight into the microbial metabolism of MAs in the marine environment and how it may affect both nutrient flow within marine surface waters and the flux of these climatically important compounds into the atmosphere.

Calcite/aragonite-biocoated artificial coral reefs for marine parks

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Volodymyr Ivanov

2017-08-01

Full Text Available Natural formation of the coral reefs is complicated by slow biomediated precipitation of calcium carbonate from seawater. Therefore, manufactured artificial coral reefs can be used for the formation of “underwater gardens” in marine parks for the recreational fishing and diving that will protect natural coral reefs from negative anthropogenic effects. Additionally, the coating of the concrete, plastic or wooden surfaces of artificial coral reef with calcium carbonate layer could promote attachment and growth of coral larvae and photosynthetic epibiota on these surfaces. Three methods of biotechnological coating of the artificial coral reefs have been tested: (1 microbially induced calcium carbonate precipitation from concentrated calcium chloride solution using live bacterial culture of Bacillus sp. VS1 or dead but urease-active cells of Yaniella sp. VS8; (2 precipitation from calcium bicarbonate solution; (3 precipitation using aerobic oxidation of calcium acetate by bacteria Bacillus ginsengi strain VSA1. The thickness of biotechnologically produced calcium carbonate coating layer was from 0.3 to 3 mm. Biocoating using calcium salt and urea produced calcite in fresh water and aragonite in seawater. The calcium carbonate-coated surfaces were colonized in aquarium with seawater and hard corals as inoculum or in aquarium with fresh water using cyanobacteria Chlorella sorokiana as inoculum. The biofilm on the light-exposed side of calcium carbonate-coated surfaces was formed after six weeks of incubation and developed up to the average thickness of 250 µm in seawater and about 150 µm in fresh water after six weeks of incubation. The biotechnological manufacturing of calcium carbonate-coated concrete, plastic, or wooden surfaces of the structures imitating natural coral reef is technologically feasible. It could be commercially attractive solution for the introduction of aesthetically pleasant artificial coral reefs in marine parks and

Viral lysis of marine microbes in relation to vertical stratification

NARCIS (Netherlands)

Mojica, K.D.A.

2015-01-01

Marine microorganisms represent the largest reservoir of living organic carbon in the ocean and collectively manage the pools and fluxes of nutrients and energy. Climate-induced increases in sea surface temperature and associated modifications to vertical stratification are affecting the structure

Where and What Is Pristine Marine Aerosol?

Science.gov (United States)

Russell, L. M.; Frossard, A. A.; Long, M. S.; Burrows, S. M.; Elliott, S.; Bates, T. S.; Quinn, P.

2014-12-01

The sources and composition of atmospheric marine aerosol particles have been measured by functional group composition (from Fourier transform infrared spectroscopy) to identify the organic composition of the pristine primary marine (ocean-derived) particles as 65% hydroxyl, 21% alkane, 6% amine, and 7% carboxylic acid functional groups [Frossard et al., 2014a,b]. Pristine but non-primary components from photochemical reactions (likely from biogenic marine vapor emissions) add carboxylic acid groups. Non-pristine contributions include shipping effluent in seawater and ship emissions, which add additional alkane groups (up to 70%), and coastal or continental emissions mix in alkane and carboxylic acid groups. The pristine primary marine (ocean-derived) organic aerosol composition is nearly identical to model generated primary marine aerosol particles from bubbled seawater, indicating that its overall functional group composition is the direct consequence of the organic constituents of the seawater source. While the seawater organic functional group composition was nearly invariant across all three ocean regions studied and the ratio of organic carbon to sodium (OC/Na+) in the generated primary marine aerosol particles remained nearly constant over a broad range of chlorophyll-a concentrations, the generated primary marine aerosol particle alkane group fraction increased with chlorophyll-a concentrations. In addition, the generated primary marine aerosol particles have a hydroxyl group absorption peak location characteristic of monosaccharides and disaccharides, where the seawater hydroxyl group peak location is closer to that of polysaccharides. References Cited Frossard, Amanda A., Lynn M. Russell, Paola Massoli, Timothy S. Bates, and Patricia K. Quinn, "Side-by-Side Comparison of Four Techniques Explains the Apparent Differences in the Organic Composition of Generated and Ambient Marine Aerosol Particles," Aerosol Science and Technology - Aerosol Research Letter

A significant abiotic pathway for the formation of unknown nitrogen in nature

Science.gov (United States)

Jokic, A.; Schulten, H.-R.; Cutler, J. N.; Schnitzer, M.; Huang, P. M.

2004-03-01

The global nitrogen cycle is of prime importance in natural ecosystems. However, the origin and nature of up to one-half of total soil N remains obscure despite all attempts at elucidation. Our data provide, for the first time, unequivocal evidence that the promoting action of Mn (IV) oxide on the Maillard reaction (sugar-amino acid condensation) under ambient conditions results in the abiotic formation of heterocyclic N compounds, which are often referred to as unknown nitrogen, and of amides which are apparently the dominant N moieties in nature. The information presented is of fundamental significance in understanding the role of mineral colloids in abiotic transformations of organic N moieties, the incorporation of N in the organic matrix of fossil fuels, and the global N cycle.

Factors influencing organic-horizon carbon pools in mixed-species stands of central Maine, USA

Science.gov (United States)

Joshua J. Puhlick; Shawn Fraver; Ivan J. Fernandez; Aaron R. Weiskittel; Laura S. Kenefic; Randy Kolka; Marie-Cecile Gruselle

2016-01-01

The overall goal of this study was to evaluate the correlation of multiple abiotic and biotic factors with organic-horizon (O-horizon) carbon (C) content on the Penobscot Experimental Forest in central Maine, USA. O-horizon samples were collected and their associated depths were recorded from stands managed with a range of silvicultural and harvesting treatments (i.e...

Response of salt-marsh carbon accumulation to climate change.

Science.gov (United States)

Kirwan, Matthew L; Mudd, Simon M

2012-09-27

About half of annual marine carbon burial takes place in shallow water ecosystems where geomorphic and ecological stability is driven by interactions between the flow of water, vegetation growth and sediment transport. Although the sensitivity of terrestrial and deep marine carbon pools to climate change has been studied for decades, there is little understanding of how coastal carbon accumulation rates will change and potentially feed back on climate. Here we develop a numerical model of salt marsh evolution, informed by recent measurements of productivity and decomposition, and demonstrate that competition between mineral sediment deposition and organic-matter accumulation determines the net impact of climate change on carbon accumulation in intertidal wetlands. We find that the direct impact of warming on soil carbon accumulation rates is more subtle than the impact of warming-driven sea level rise, although the impact of warming increases with increasing rates of sea level rise. Our simulations suggest that the net impact of climate change will be to increase carbon burial rates in the first half of the twenty-first century, but that carbon-climate feedbacks are likely to diminish over time.

Impact of Emissions of Marine Diesel Engines to Air Pollution on the Example of the Yugoslav River Shipping

OpenAIRE

Dragan Ljevaja

2011-01-01

The subject of this paper is the impact which marine diesel engines have on air pollution. The combustion of fossil fuels for marine diesel engines produces emission of various greenhouse gases; including carbon dioxide (CO2), methane (CH4), nitrous oxide (N2O), carbon monoxide (CO), oxides of nitrogen (NOx), non-methane volatile organic compounds (NMVOCs), and sulphur dioxide (SO2). Gas emission calculation is shown on the example of the Yugoslav river shipping with two methods for calculati...

Review of Abiotic Degradation of Chlorinated Solvents by Reactive Iron Minerals

Science.gov (United States)

Abiotic degradation of chlorinated solvents by reactive iron minerals such as iron sulfides, magnetite, green rust, and other Fe(II)-containing minerals has been observed in both laboratory and field conditions. These reactive iron minerals typically form under iron and sulfate ...

Comparing the desorption and biodegradation of low concentrations of phenanthrene sorbed to activated carbon, biochar and compost

DEFF Research Database (Denmark)

Marchal, Geoffrey; Smith, Kilian E.C.; Rein, Arno

2013-01-01

can be degraded at all, the desorption and biodegradation of low concentrations of 14C-labelled phenanthrene (⩽5μgL−1) freshly sorbed to suspensions of the pure soil amendments activated carbon (AC), biochar (charcoal) and compost were compared. Firstly, the maximum abiotic desorption of phenanthrene...

Alcohol dehydrogenase 1 (ADH1) confers both abiotic and biotic stress resistance in Arabidopsis.

Science.gov (United States)

Shi, Haitao; Liu, Wen; Yao, Yue; Wei, Yunxie; Chan, Zhulong

2017-09-01

Although the transcriptional regulation and upstream transcription factors of AtADH1 in response to abiotic stress are widely revealed, the in vivo roles of AtADH1 remain unknown. In this study, we found that the expression of AtADH1 was largely induced after salt, drought, cold and pathogen infection. Further studies found that AtADH1 overexpressing plants were more sensitive to abscisic acid (ABA) in comparison to wide type (WT), while AtADH1 knockout mutants showed no significant difference compared with WT in ABA sensitivity. Consistently, AtADH1 overexpressing plants showed improved stress resistance to salt, drought, cold and pathogen infection than WT, but the AtADH1 knockout mutants had no significant difference in abiotic and biotic stress resistance. Moreover, overexpression of AtADH1 expression increased the transcript levels of multiple stress-related genes, accumulation of soluble sugars and callose depositions. All these results indicate that AtADH1 confers enhanced resistance to both abiotic and biotic stresses. Copyright © 2017 Elsevier B.V. All rights reserved.

Methane-bearing fluids in subduction zones: an experimental study of abiotic methanogenesis during serpentinization at 12 kbar and 300°C

Science.gov (United States)

Lazar, C.; Manning, C. E.

2009-12-01

Serpentinization within subduction zones may generate reduced fluids that contain higher concentrations of abiotic methane than near-surface ultramafic environments. We present preliminary experimental data suggesting that the kinetics of abiotic methanogenesis are enhanced at high pressures. Thermodynamic calculations of C-O-H fluid speciations at the low oxygen fugacities attained during early serpentinization suggest complete conversion of oxidized carbon to methane, yet previous field and experimental investigations have reported fluid compositions with CH4/CO2 far below equilibrium (McCollom and Seewald, 2007). Much experimental work, therefore, has focused on CH4 production rates and the kinetic effects of temperature and mineral catalysis (Horita and Berdt, 1999; Foustoukos and Seyfried, 2004). Methane has been shown experimentally to form at very high pressures (Scott et al, 2004), but the quantitative effect of pressure on methanogenesis kinetics is unknown. We present preliminary results of a comparison of methane production rates at 0.35 and 12 kbar, 300°C, using experiments performed in piston cylinder and cold seal hydrothermal apparatus. Carbon was introduced as a roughly 70 mmol solution of isotopically-labeled formic acid, H13COOH, known to decompose to 13CO2 and H2 at run conditions. Roughly 15 mL of this solution, along with 1.9 mg of natural awaruite (Ni3Fe), was loaded into a gold capsule and then sealed via DC spot welding. Awaruite, a known methane catalyst (Horita and Berndt, 1999), was added to increase the overall rates of all experiments in order to boost the concentration for analysis and as an fO2 buffer appropriate for serpentinization. The experiments were held at T and P for approximately 160 hours. After each run, the capsule was placed in a gas vial and punctured with a needle. The contents of the vial were extracted via gas syringe and injected into gas chromatograph mass spectrometer (GC-MS). CH4 concentration in the 12 kbar run

Early diagenetic high-magnesium calcite and dolomite indicate that coal balls formed in marine or brackish water: Stratigraphic and paleoclimatic implications

Science.gov (United States)

Raymond, Anne

2016-04-01

Coal balls are carbonate and pyrite permineralizations of peat that contain three-dimensional plant fossils preserved at the cellular level. Coal balls, which occur in Pennsylvanian and earliest Permian equatorial coals, provide a detailed record of terrestrial ecology and tropical climate during the Late Paleozoic Ice Age; yet their depositional environment remains controversial. The exquisite preservation of some coal-ball fossils, e.g. pollen with pollen tubes and leaves with mesophyll, indicates rapid formation. The presence of abundant, cement-filled, void spaces within and between the plant debris in most coal balls indicates that they formed in uncompacted peat, near the surface of the mire. Botanical, taphonomic and isotopic evidence point to a freshwater origin for coal balls. The nearest living relatives of coal ball plants (modern lycopsids, sphenopsids, marratialean ferns and conifers) grow in fresh water. Coal-ball peat contains a high percentage of aerial debris, similar to modern freshwater peat. The stable oxygen isotopes of coal-ball carbonate (δ18O = 16 to 3 per mil) suggest a freshwater origin. However, the widespread occurrence of marine invertebrates and early diagenetic framboidal pyrite in coal balls suggests that many formed in close proximity to marine water. Indeed, carbonate petrology points to a marine or brackish water origin for the first-formed carbonate cements in coal balls. Petrographic and geochemical (microprobe) analysis of coal-ball carbonates in Pennsylvanian coals from the midcontinent of North America (Western Interior Basin, West Pangaea) and the Ruhr and Donets Basins (East Pangaea) indicate that the first formed carbonate is either radaxial, nonstochiometric dolomite or high magnesium calcite (9 - 17 mol % MgCO3, indicating precipitation in marine or brackish water. Although both primary dolomite and high magnesium calcite can form in lacustrine settings, the lakes in which these minerals form occur in carbonate terranes

Contribution of deep sourced carbon from hydrocarbon seeps to sedimentary organic carbon: Evidence from Δ14C and δ13C isotopes

Science.gov (United States)

Feng, D.; Peckmann, J.; Peng, Y.; Liang, Q.; Roberts, H. H.; Chen, D.

2017-12-01

Sulfate-driven anaerobic oxidation of methane (AOM) limits the release of methane from marine sediments and promotes the formation of carbonates close to the seafloor along continental margins. It has been established that hydrocarbon seeps are a source of dissolved inorganic and organic carbon to marine environments. However, questions remain about the contribution of deep sourced carbon from hydrocarbon seeps to the sedimentary organic carbon pool. For a number of hydrocarbon seeps from the South China Sea and the Gulf of Mexico, the portion of modern carbon was determined based on natural radiocarbon abundances (Δ14C) and stable carbon isotope (δ13Corganic carbon) compositions of the non-carbonate fractions extracted from authigenic carbonates. Samples from both areas show a mixing trend between ideal planktonic organic carbon (δ13C = -22‰ VPDB and 90% modern carbon) and the ambient methane. The δ13Corganic carbon values of non-carbonate fractions from three ancient seep deposits (northern Italy, Miocene; western Washington State, USA, Eocene to Oligocene) confirm that the proxy can be used to constrain the record of sulfate-driven AOM through most of Earth history by measuring the δ13C values of organic carbon. This study reveals the potential of using δ13C values of organic carbon to discern seep and non-seep environments. This new approach is particularly promising when authigenic carbonate is not present in ancient sedimentary environments. Acknowledgments: The authors thank BOEM and NOAA for their years' support of the deep-sea dives. Funding was provided by the NSF of China (Grants: 41422602 and 41373085).

Sources of variance in BC mass measurements from a small marine engine: Influence of the instruments, fuels and loads

Science.gov (United States)

Jiang, Yu; Yang, Jiacheng; Gagné, Stéphanie; Chan, Tak W.; Thomson, Kevin; Fofie, Emmanuel; Cary, Robert A.; Rutherford, Dan; Comer, Bryan; Swanson, Jacob; Lin, Yue; Van Rooy, Paul; Asa-Awuku, Akua; Jung, Heejung; Barsanti, Kelley; Karavalakis, Georgios; Cocker, David; Durbin, Thomas D.; Miller, J. Wayne; Johnson, Kent C.

2018-06-01

Knowledge of black carbon (BC) emission factors from ships is important from human health and environmental perspectives. A study of instruments measuring BC and fuels typically used in marine operation was carried out on a small marine engine. Six analytical methods measured the BC emissions in the exhaust of the marine engine operated at two load points (25% and 75%) while burning one of three fuels: a distillate marine (DMA), a low sulfur, residual marine (RMB-30) and a high-sulfur residual marine (RMG-380). The average emission factors with all instruments increased from 0.08 to 1.88 gBC/kg fuel in going from 25 to 75% load. An analysis of variance (ANOVA) tested BC emissions against instrument, load, and combined fuel properties and showed that both engine load and fuels had a statistically significant impact on BC emission factors. While BC emissions were impacted by the fuels used, none of the fuel properties investigated (sulfur content, viscosity, carbon residue and CCAI) was a primary driver for BC emissions. Of the two residual fuels, RMB-30 with the lower sulfur content, lower viscosity and lower residual carbon, had the highest BC emission factors. BC emission factors determined with the different instruments showed a good correlation with the PAS values with correlation coefficients R2 >0.95. A key finding of this research is the relative BC measured values were mostly independent of load and fuel, except for some instruments in certain fuel and load combinations.

Marine cloud brightening

Science.gov (United States)

Latham, John; Bower, Keith; Choularton, Tom; Coe, Hugh; Connolly, Paul; Cooper, Gary; Craft, Tim; Foster, Jack; Gadian, Alan; Galbraith, Lee; Iacovides, Hector; Johnston, David; Launder, Brian; Leslie, Brian; Meyer, John; Neukermans, Armand; Ormond, Bob; Parkes, Ben; Rasch, Phillip; Rush, John; Salter, Stephen; Stevenson, Tom; Wang, Hailong; Wang, Qin; Wood, Rob

2012-01-01

The idea behind the marine cloud-brightening (MCB) geoengineering technique is that seeding marine stratocumulus clouds with copious quantities of roughly monodisperse sub-micrometre sea water particles might significantly enhance the cloud droplet number concentration, and thereby the cloud albedo and possibly longevity. This would produce a cooling, which general circulation model (GCM) computations suggest could—subject to satisfactory resolution of technical and scientific problems identified herein—have the capacity to balance global warming up to the carbon dioxide-doubling point. We describe herein an account of our recent research on a number of critical issues associated with MCB. This involves (i) GCM studies, which are our primary tools for evaluating globally the effectiveness of MCB, and assessing its climate impacts on rainfall amounts and distribution, and also polar sea-ice cover and thickness; (ii) high-resolution modelling of the effects of seeding on marine stratocumulus, which are required to understand the complex array of interacting processes involved in cloud brightening; (iii) microphysical modelling sensitivity studies, examining the influence of seeding amount, seed-particle salt-mass, air-mass characteristics, updraught speed and other parameters on cloud–albedo change; (iv) sea water spray-production techniques; (v) computational fluid dynamics studies of possible large-scale periodicities in Flettner rotors; and (vi) the planning of a three-stage limited-area field research experiment, with the primary objectives of technology testing and determining to what extent, if any, cloud albedo might be enhanced by seeding marine stratocumulus clouds on a spatial scale of around 100×100 km. We stress that there would be no justification for deployment of MCB unless it was clearly established that no significant adverse consequences would result. There would also need to be an international agreement firmly in favour of such action

Marine Cloud Brightening

Energy Technology Data Exchange (ETDEWEB)

Latham, John; Bower, Keith; Choularton, Tom; Coe, H.; Connolly, P.; Cooper, Gary; Craft, Tim; Foster, Jack; Gadian, Alan; Galbraith, Lee; Iacovides, Hector; Johnston, David; Launder, Brian; Leslie, Brian; Meyer, John; Neukermans, Armand; Ormond, Bob; Parkes, Ben; Rasch, Philip J.; Rush, John; Salter, Stephen; Stevenson, Tom; Wang, Hailong; Wang, Qin; Wood, Robert

2012-09-07

The idea behind the marine cloud-brightening (MCB) geoengineering technique is that seeding marine stratocumulus clouds with copious quantities of roughly monodisperse sub-micrometre sea water particles might significantly enhance the cloud droplet number concentration, and thereby the cloud albedo and possibly longevity. This would produce a cooling, which general circulation model (GCM) computations suggest could - subject to satisfactory resolution of technical and scientific problems identified herein - have the capacity to balance global warming up to the carbon dioxide-doubling point. We describe herein an account of our recent research on a number of critical issues associated with MCB. This involves (i) GCM studies, which are our primary tools for evaluating globally the effectiveness of MCB, and assessing its climate impacts on rainfall amounts and distribution, and also polar sea-ice cover and thickness; (ii) high-resolution modelling of the effects of seeding on marine stratocumulus, which are required to understand the complex array of interacting processes involved in cloud brightening; (iii) microphysical modelling sensitivity studies, examining the influence of seeding amount, seedparticle salt-mass, air-mass characteristics, updraught speed and other parameters on cloud-albedo change; (iv) sea water spray-production techniques; (v) computational fluid dynamics studies of possible large-scale periodicities in Flettner rotors; and (vi) the planning of a three-stage limited-area field research experiment, with the primary objectives of technology testing and determining to what extent, if any, cloud albedo might be enhanced by seeding marine stratocumulus clouds on a spatial scale of around 100 km. We stress that there would be no justification for deployment of MCB unless it was clearly established that no significant adverse consequences would result. There would also need to be an international agreement firmly in favour of such action.

Marine cloud brightening.

Science.gov (United States)

Latham, John; Bower, Keith; Choularton, Tom; Coe, Hugh; Connolly, Paul; Cooper, Gary; Craft, Tim; Foster, Jack; Gadian, Alan; Galbraith, Lee; Iacovides, Hector; Johnston, David; Launder, Brian; Leslie, Brian; Meyer, John; Neukermans, Armand; Ormond, Bob; Parkes, Ben; Rasch, Phillip; Rush, John; Salter, Stephen; Stevenson, Tom; Wang, Hailong; Wang, Qin; Wood, Rob

2012-09-13

The idea behind the marine cloud-brightening (MCB) geoengineering technique is that seeding marine stratocumulus clouds with copious quantities of roughly monodisperse sub-micrometre sea water particles might significantly enhance the cloud droplet number concentration, and thereby the cloud albedo and possibly longevity. This would produce a cooling, which general circulation model (GCM) computations suggest could-subject to satisfactory resolution of technical and scientific problems identified herein-have the capacity to balance global warming up to the carbon dioxide-doubling point. We describe herein an account of our recent research on a number of critical issues associated with MCB. This involves (i) GCM studies, which are our primary tools for evaluating globally the effectiveness of MCB, and assessing its climate impacts on rainfall amounts and distribution, and also polar sea-ice cover and thickness; (ii) high-resolution modelling of the effects of seeding on marine stratocumulus, which are required to understand the complex array of interacting processes involved in cloud brightening; (iii) microphysical modelling sensitivity studies, examining the influence of seeding amount, seed-particle salt-mass, air-mass characteristics, updraught speed and other parameters on cloud-albedo change; (iv) sea water spray-production techniques; (v) computational fluid dynamics studies of possible large-scale periodicities in Flettner rotors; and (vi) the planning of a three-stage limited-area field research experiment, with the primary objectives of technology testing and determining to what extent, if any, cloud albedo might be enhanced by seeding marine stratocumulus clouds on a spatial scale of around 100×100 km. We stress that there would be no justification for deployment of MCB unless it was clearly established that no significant adverse consequences would result. There would also need to be an international agreement firmly in favour of such action.

Hydrologic, abiotic and biotic interactions: plant density, windspeed, leaf size and groundwater all affect oak water use efficiency

Science.gov (United States)

Darin J. Law; Deborah M. Finch

2011-01-01

Plant water use in drylands can be complex due to variation in hydrologic, abiotic and biotic factors, particularly near ephemeral or intermittent streams. Plant use of groundwater may be important but is usually uncertain. Disturbances like fire contribute to complex spatiotemporal heterogeneity. Improved understanding of how such hydrologic, abiotic, and biotic...

Regulation of Translation Initiation under Biotic and Abiotic Stresses

Directory of Open Access Journals (Sweden)

Ana B. Castro-Sanz

2013-02-01

Full Text Available Plants have developed versatile strategies to deal with the great variety of challenging conditions they are exposed to. Among them, the regulation of translation is a common target to finely modulate gene expression both under biotic and abiotic stress situations. Upon environmental challenges, translation is regulated to reduce the consumption of energy and to selectively synthesize proteins involved in the proper establishment of the tolerance response. In the case of viral infections, the situation is more complex, as viruses have evolved unconventional mechanisms to regulate translation in order to ensure the production of the viral encoded proteins using the plant machinery. Although the final purpose is different, in some cases, both plants and viruses share common mechanisms to modulate translation. In others, the mechanisms leading to the control of translation are viral- or stress-specific. In this paper, we review the different mechanisms involved in the regulation of translation initiation under virus infection and under environmental stress in plants. In addition, we describe the main features within the viral RNAs and the cellular mRNAs that promote their selective translation in plants undergoing biotic and abiotic stress situations.

A marine biogeochemical perspective on black shale deposition

Science.gov (United States)

Piper, D. Z.; Calvert, S. E.

2009-06-01

Deposition of marine black shales has commonly been interpreted as having involved a high level of marine phytoplankton production that promoted high settling rates of organic matter through the water column and high burial fluxes on the seafloor or anoxic (sulfidic) water-column conditions that led to high levels of preservation of deposited organic matter, or a combination of the two processes. Here we review the hydrography and the budgets of trace metals and phytoplankton nutrients in two modern marine basins that have permanently anoxic bottom waters. This information is then used to hindcast the hydrography and biogeochemical conditions of deposition of a black shale of Late Jurassic age (the Kimmeridge Clay Formation, Yorkshire, England) from its trace metal and organic carbon content. Comparison of the modern and Jurassic sediment compositions reveals that the rate of photic zone primary productivity in the Kimmeridge Sea, based on the accumulation rate of the marine fraction of Ni, was as high as 840 g organic carbon m - 2 yr -1. This high level was possibly tied to the maximum rise of sea level during the Late Jurassic that flooded this and other continents sufficiently to allow major open-ocean boundary currents to penetrate into epeiric seas. Sites of intense upwelling of nutrient-enriched seawater would have been transferred from the continental margins, their present location, onto the continents. This global flooding event was likely responsible for deposition of organic matter-enriched sediments in other marine basins of this age, several of which today host major petroleum source rocks. Bottom-water redox conditions in the Kimmeridge Sea, deduced from the V:Mo ratio in the marine fraction of the Kimmeridge Clay Formation, varied from oxic to anoxic, but were predominantly suboxic, or denitrifying. A high settling flux of organic matter, a result of the high primary productivity, supported a high rate of bacterial respiration that led to the

Sedimentology and chemostratigraphy of a Valanginian carbonate succession from the Baja Guajira Basin, northern Colombia

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Juan Carlos Silva-Tamayo

Full Text Available ABSTRACT: The Kesima Member of the Palanz Formation constitutes the first record of Cretaceous marine sedimentation along the Baja Guajira Basin, northern Colombia. Sedimentologic and petrographic analyses suggest a deposition along a coral reef dominated rimmed carbonate platform. 87Sr/86Sr values between 0.707350 and 0.707400 suggest a Valanginian (136 - 132 Ma depositional age for the Kesima Member. A positive anomaly on the δ13C values of ~2.2‰ suggests that this rimmed carbonate platform registered the Valanginian Weissert oceanic anoxic event. Although the Weissert oceanic anoxic event resulted on a major drowning of the Circum Tethyan carbonate platforms, it seems to have not affected those from the Circum Caribbean, where several shallow marine carbonate platform successions crop out. The Kesima Member displays a change from an organically produced carbonate factory into an inorganically produced, ooids dominated, carbonate factory during the peak of the Weissert event δ13C anomaly. This change in the carbonate factory, which may represent a major perturbation of the marine carbonate budget along tropical settings during the Weissert event, coincides with a major decrease in global sea level. Finally, the age of the Kesima Member is considerably older than that of other Cretaceous carbonate successions cropping out in other northern South America sedimentary basins (i.e. Perija-Merida, Cesar-Rancheria. Differences in the timing of the Cretaceous marine incursion along northern South America, together with the differences in the Triassic-Jurassic stratigraphy of several sedimentary basins in northern South America, suggest that the Baja Guajira and Maracaibo basins remained as an isolated tectonic block separated from northern South America after the breakup of Pangea.

ATP Supply May Contribute to Light-Enhanced Calcification in Corals More Than Abiotic Mechanisms

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Giovanni Galli

2018-03-01

Full Text Available Zooxanthellate corals are known to increase calcification rates when exposed to light, a phenomenon called light-enhanced calcification that is believed to be mediated by symbionts' photosynthetic activity. There is controversy over the mechanism behind this phenomenon, with hypotheses coarsely divided between abiotic and biologically-mediated mechanisms. At the same time, accumulating evidence shows that calcification in corals relies on active ion transport to deliver the skeleton building blocks into the calcifying medium, making it is an energetically costly activity. Here we build on generally accepted conceptual models of the coral calcification machinery and conceptual models of the energetics of coral-zooxanthellae symbiosis to develop a model that can be used to isolate the biologically-mediated and abiotic effects of photosynthesis, respiration, temperature, and seawater chemistry on coral calcification rates and related metabolic costs. We tested this model on data from the Mediterranean scleractinian Cladocora caespitosa, an acidification resistant species. We concluded that most of the variation in calcification rates due to photosynthesis, respiration and temperature can be attributed to biologically-mediated mechanisms, in particular to the ATP supplied to the active ion transports. Abiotic effects are also present but are of smaller magnitude. Instead, the decrease in calcification rates caused by acidification, albeit small, is sustained by both abiotic and biologically-mediated mechanisms. However, there is a substantial extra cost of calcification under acidified conditions. Based on these findings and on a literature review we suggest that the energy aspect of coral calcification might have been so far underappreciated.

Spread, Behavior, and Ecosystem Consequences of Conventional Munitions Compounds in Coastal Marine Waters

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Aaron J. Beck

2018-04-01

Full Text Available Coastal marine environments are contaminated globally with a vast quantity of unexploded ordnance and munitions from intentional disposal. These munitions contain organic explosive compounds as well as a variety of metals, and represent point sources of chemical pollution to marine waters. Most underwater munitions originate from World Wars at the beginning of the twentieth century, and metal munitions housings have been impacted by extensive corrosion over the course of the following decades. As a result, the risk of munitions-related contaminant release to the water column is increasing. The behavior of munitions compounds is well-characterized in terrestrial systems and groundwater, but is only poorly understood in marine systems. Organic explosive compounds, primarily nitroaromatics and nitramines, can be degraded or transformed by a variety of biotic and abiotic mechanisms. These reaction products exhibit a range in biogeochemical characteristics such as sorption by particles and sediments, and variable environmental behavior as a result. The reaction products often exhibit increased toxicity to biological receptors and geochemical controls like sorption can limit this exposure. Environmental samples typically show low concentrations of munitions compounds in water and sediments (on the order of ng/L and μg/kg, respectively, and ecological risk appears generally low. Nonetheless, recent work demonstrates the possibility of sub-lethal genetic and metabolic effects. This review evaluates the state of knowledge on the occurrence, fate, and effect of munition-related chemical contaminants in the marine environment. There remain a number of knowledge gaps that limit our understanding of munitions-related contaminant spread and effect, and the need for additional work is made all the more urgent by increasing risk of release to the environment.

Ether lipids of planktonic archae in the marine water column

NARCIS (Netherlands)

Sinninghe Damsté, J.S.; Hoefs, M.J.L.; Schouten, S.; King, L.L.; Wakeham, S.G.; Leeuw, J.W. de

1997-01-01

Acyclic and cyclic biphytanes derived from the membrane ether lipids of archaea were found in water column particulate and sedimentary organic matter from several oxic and anoxic marine environments. Compound-specific isotope analyses of the carbon skeletons suggest that planktonic archaea utilize

Abiotic and Biotic Formation of Amino Acids in the Enceladus Ocean.

Science.gov (United States)

Steel, Elliot L; Davila, Alfonso; McKay, Christopher P

2017-09-01

The active plume at Enceladus' south pole makes the indirect sampling of its global ocean possible. The partially resolved chemistry of the plume, which points to conditions that are seemingly compatible with life, has made orbital sampling missions a priority. We present a conceptual model of energy flux, hydrothermal H 2 production, and both abiotic and biotic production of amino acids. Based on the energy flux observed at the south pole and the inferred internal hydrothermal activity, we estimate an H 2 production of 0.6-34 mol/s from serpentinization, sufficient to sustain abiotic and biotic amino acid synthesis of 1.6-87 and 1-44 g/s, respectively. Two-dimensional (2D) numerical simulations of the hydrothermal vent suggest that the vent fluids could reach the ice-water boundary in less than 11-55 days for a 50 km deep ocean diluted by ambient ocean water 10 to 1. Concentrations of glycine, alanine, α-amino isobutyric acid, and glutamic acid in the plume and in the ambient ocean could all be above 0.01 μM just due to abiotic production. Biological synthesis, if occurring, could produce a maximum of 90 μM concentrations of amino acids based on a methanogenic ecosystem consuming H 2 and CO 2 . Racemization timescales in the ocean are short compared with production timescales. Thus, no enantiomeric excess is expected in the ambient ocean, and if biology is present, enantiomeric excess at the vent fluids is expected to be less than 10% in the plume. From vent H 2 concentrations of 7.8 mM (e.g., Lost City) and assuming complete H 2 use and conversion to chemical energy by methanogens, cell production is estimated. Annual biomass production in the methanogenic-based biology model is 4 × 10 4 -2 × 10 6 kg/year. This corresponds to cell concentrations ∼10 9 cells/cm 3 in the vents and ∼10 8 cells/cm 3 in the plume, and when diluted into the ambient ocean, we predict cell concentrations of 80-4250 cells/cm 3 . Key Words: Abiotic organic

Glacial and tectonic influence on terrestrial organic carbon delivery to high latitude deep marine systems: IODP Site U1417, Surveyor Fan, Gulf of Alaska

Science.gov (United States)

Childress, L. B.; Ridgway, K. D.

2014-12-01

Glacial and tectonic processes on active margins are intrinsically coupled to the transport of sediment and associated organic carbon (OC). Glaciation/deglaciation and the formation of ice sheets can alter the quantity and composition of OC delivered to the marine environment. Over geologic time scales (>1 Ma), exhumation and mass wasting of sedimentary rock from uplifted accretionary wedges inject recycled OC (e.g. kerogen), along with modern OC into the marine environment. The sedimentary record of glacial and tectonic processes along the southern Alaska margin is particularly well preserved at Integrated Ocean Drilling Program (IODP) Site U1417. Lithofacies of Site U1417 can be divided into 3 sedimentary packages that we interpret as linked to the onset of tidewater glaciation along, and tectonic convergence of the Yakutat Terrane with, the continental margin of northwestern Canada and southern Alaska. Based on previous studies linking the development of the Cordilleran Ice Sheet and the movement of the Yakutat Terrane to the development of the Surveyor Fan System, we hypothesize biogeochemical variations in the deposited sediments as a result of changing provenance. Preservation of terrestrial OC that has been documented in sediments of the Alaskan continental shelf margin and sediment routing through the deep-sea Surveyor Channel from the Pleistocene to modern time implies a long-term conduit for this OC to reach the distal portion of the Surveyor Fan system. To correlate marine deposits with terrestrial formations, bulk geochemical and detailed biomarker analyses are used to delineate source material. Preliminary bulk OC content and stable carbon isotope analyses of the Yakataga, Poul Creek, and Kultheith Fms. reveal notable differences. Detailed biomarker analysis by pyrolysis-gas chromatograph-mass spectrometry has revealed further differences between the three primary formations. Using the biogeochemical fingerprints of the Yakataga, Poul Creek, and coal

Methylamine as a nitrogen source for microorganisms from a coastal marine environment.

Science.gov (United States)

Taubert, Martin; Grob, Carolina; Howat, Alexandra M; Burns, Oliver J; Pratscher, Jennifer; Jehmlich, Nico; von Bergen, Martin; Richnow, Hans H; Chen, Yin; Murrell, J Colin

2017-06-01

Nitrogen is a key limiting resource for biomass production in the marine environment. Methylated amines, released from the degradation of osmolytes, could provide a nitrogen source for marine microbes. Thus far, studies in aquatic habitats on the utilization of methylamine, the simplest methylated amine, have mainly focussed on the fate of the carbon from this compound. Various groups of methylotrophs, microorganisms that can grow on one-carbon compounds, use methylamine as a carbon source. Non-methylotrophic microorganisms may also utilize methylamine as a nitrogen source, but little is known about their diversity, especially in the marine environment. In this proof-of-concept study, stable isotope probing (SIP) was used to identify microorganisms from a coastal environment that assimilate nitrogen from methylamine. SIP experiments using 15 N methylamine combined with metagenomics and metaproteomics facilitated identification of active methylamine-utilizing Alpha- and Gammaproteobacteria. The draft genomes of two methylamine utilizers were obtained and their metabolism with respect to methylamine was examined. Both bacteria identified in these SIP experiments used the γ-glutamyl-methylamide pathway, found in both methylotrophs and non-methylotrophs, to metabolize methylamine. The utilization of 15 N methylamine also led to the release of 15 N ammonium that was used as nitrogen source by other microorganisms not directly using methylamine. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Carbon Dioxide Effects Research and Assessment Program: Proceedings of the carbon dioxide and climate research program conference

Energy Technology Data Exchange (ETDEWEB)

Schmitt, L E [ed.

1980-12-01

Papers presented at the Carbon Dioxide and Climate Research Program Conference are included in this volume. Topics discussed are: the carbon cycle; modeling the carbon system; climatic response due to increased CO₂; climate modeling; the use of paleoclimatic data in understanding climate change; attitudes and implications of CO₂; social responses to the CO₂ problem; a scenario for atmospheric CO₂ to 2025; marine photosynthesis and the global carbon cycle; and the role of tropical forests in the carbon balance of the world. Separate abstracts of nine papers have been prepared for inclusion in the Energy Data Base. (RJC)

Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.

Science.gov (United States)

Shen, Po-Chih; Hour, Ai-Ling; Liu, Li-Yu Daisy

2017-12-01

Abiotic stresses are the major limiting factors that affect plant growth, development, yield and final quality. Deciphering the underlying mechanisms of plants' adaptations to stresses using few datasets might overlook the different aspects of stress tolerance in plants, which might be simultaneously and consequently operated in the system. Fortunately, the accumulated microarray expression data offer an opportunity to infer abiotic stress-specific gene expression patterns through meta-analysis. In this study, we propose to combine microarray gene expression data under control, cold, drought, heat, and salt conditions and determined modules (gene sets) of genes highly associated with each other according to the observed expression data. By analyzing the expression variations of the Eigen genes from different conditions, we had identified two, three, and five gene modules as cold-, heat-, and salt-specific modules, respectively. Most of the cold- or heat-specific modules were differentially expressed to a particular degree in shoot samples, while most of the salt-specific modules were differentially expressed to a particular degree in root samples. A gene ontology (GO) analysis on the stress-specific modules suggested that the gene modules exclusively enriched stress-related GO terms and that different genes under the same GO terms may be alternatively disturbed in different conditions. The gene regulatory events for two genes, DREB1A and DEAR1, in the cold-specific gene module had also been validated, as evidenced through the literature search. Our protocols study the specificity of the gene modules that were specifically activated under a particular type of abiotic stress. The biplot can also assist to visualize the stress-specific gene modules. In conclusion, our approach has the potential to further elucidate mechanisms in plants and beneficial for future experiments design under different abiotic stresses.

Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress

OpenAIRE

Chen Zhixiang; Xiao Yong; Shi Junwei; Lai Zhibing; Chen Han; Xu Xinping

2010-01-01

Abstract Background WRKY transcription factors are involved in plant responses to both biotic and abiotic stresses. Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors interact both physically and functionally in plant defense responses. However, their role in plant abiotic stress response has not been directly analyzed. Results We report that the three WRKYs are involved in plant responses to abscisic acid (ABA) and abiotic stress. Through analysis of single, double, and triple muta...

From marine bio-corrosion to new bio-processes

International Nuclear Information System (INIS)

Bergel, A.; Dasilva, S.; Basseguy, R.; Feron, D.; Mollica, A.

2004-01-01

suitable marine bio-films can give to stainless electrodes the same properties as platinum for oxygen reduction. This discovery might open the way to unexpected innovative processes based on the exploitation of the 'corrosive' properties of bio-films. The same trend has been initiated with the approach of marine anaerobic bio-corrosion of carbon steels. In this case, iron sulphur deposits are known to exert a preponderant role in corrosion. Nevertheless, innovative results have put in light an unexpected coupling between the presence of phosphate species and the enzyme hydrogenase. Such a possible coupling has already been suggested in previous studies, but it has never been clearly stated. Deciphering this process may lead to new track in understanding bio-corrosion of carbon steels on the one side, but also to a new eco-friendly process for hydrogenase-catalysed carbon steel phosphating. Both cases represent different illustrations of the capabilities of marine bio-corrosion to be the source of unexpected innovative biotechnological processes. (authors)

Marine CDOM accumulation during a coastal Arctic mesocosm experiment: No response to elevated pCO2 levels

NARCIS (Netherlands)

Pavlov, A.K.; Silyakova, A.; Granskog, M.A.; Bellerby, R.G.J.; Engel, A.; Schulz, K.G.; Brussaard, C.P.D.

2014-01-01

A large-scale multidisciplinary mesocosm experiment in an Arctic fjord (Kongsfjorden, Svalbard; 78°56.2′N) was used to study Arctic marine food webs and biogeochemical elements cycling at natural and elevated future carbon dioxide (CO2) levels. At the start of the experiment, marine-derived

Plutonium behavior during the early diagenesis of marine sediments: applications to two marine environments labelled by radionuclides released from reprocessing plants

International Nuclear Information System (INIS)

Gouzy, A.

2004-12-01

The plutonium released into the English Channel and the Irish Sea by nuclear fuel reprocessing plants is mainly associated to sediments. Nevertheless, this association is partially reversible. This work combines a field study, carried out on the Cumbrian mud patch and the Esk estuary (Eastern Irish Sea), and laboratory experiments performed on carbonaceous coarse-grained sediments collected in the Central Channel. It presents new data on the plutonium solid partition in sediments and suggests realistic scenarios for describing its release from sediments to the water column. The role of reactive sulphides acting as temporary sink phases is shown in anoxic sediments; those sulphides are liable to release dissolved plutonium upon their oxidation. The plutonium is also bound to carbonates within the carbonaceous matrix and as carbonate surface complexes. Conceptual schemes of the behaviour of the plutonium in marine sediments are proposed; they highlight the strong remobilization potential of plutonium from marine sediments to the interstitial water. Its plutonium content can be injected into the overlying water column. (author)

Assessment of derelict soil quality: Abiotic, biotic and functional approaches.

Science.gov (United States)

Vincent, Quentin; Auclerc, Apolline; Beguiristain, Thierry; Leyval, Corinne

2018-02-01

The intensification and subsequent closing down of industrial activities during the last century has left behind large surfaces of derelict lands. Derelict soils have low fertility, can be contaminated, and many of them remain unused. However, with the increasing demand of soil surfaces, they might be considered as a resource, for example for non-food biomass production. The study of their physico-chemical properties and of their biodiversity and biological activity may provide indications for their potential re-use. The objective of our study was to investigate the quality of six derelict soils, considering abiotic, biotic, and functional parameters. We studied (i) the soil bacteria, fungi, meso- and macro-fauna and plant communities of six different derelict soils (two from coking plants, one from a settling pond, two constructed ones made from different substrates and remediated soil, and an inert waste storage one), and (ii) their decomposition function based on the decomposer trophic network, enzyme activities, mineralization activity, and organic pollutant degradation. Biodiversity levels in these soils were high, but all biotic parameters, except the mycorrhizal colonization level, discriminated them. Multivariate analysis showed that biotic parameters co-varied more with fertility proxies than with soil contamination parameters. Similarly, functional parameters significantly co-varied with abiotic parameters. Among functional parameters, macro-decomposer proportion, enzyme activity, average mineralization capacity, and microbial polycyclic aromatic hydrocarbon degraders were useful to discriminate the soils. We assessed their quality by combining abiotic, biotic, and functional parameters: the compost-amended constructed soil displayed the highest quality, while the settling pond soil and the contaminated constructed soil displayed the lowest. Although differences among the soils were highlighted, this study shows that derelict soils may provide a

Planktic foraminifera form their shells via metastable carbonate phases

OpenAIRE

Jacob, D. E.; Wirth, R.; Agbaje, O. B. A.; Branson, O.; Eggins, S. M.

2017-01-01

The calcium carbonate shells of planktic foraminifera provide our most valuable geochemical archive of ocean surface conditions and climate spanning the last 100 million years, and play an important role in the ocean carbon cycle. These shells are preserved in marine sediments as calcite, the stable polymorph of calcium carbonate. Here, we show that shells of living planktic foraminifers Orbulina universa and Neogloboquadrina dutertrei originally form from the unstable calcium carbonate polym...

Climate sensitivity of marine energy

International Nuclear Information System (INIS)

Harrison, G.P.; Wallace, A.R.

2005-01-01

Marine energy has a significant role to play in lowering carbon emissions within the energy sector. Paradoxically, it may be susceptible to changes in climate that will result from rising carbon emissions. Wind patterns are expected to change and this will alter wave regimes. Despite a lack of definite proof of a link to global warming, wind and wave conditions have been changing over the past few decades. Changes in the wind and wave climate will affect offshore wind and wave energy conversion: where the resource is constrained, production and economic performance may suffer; alternatively, stormier climates may create survival issues. Here, a relatively simple sensitivity study is used to quantify how changes in mean wind speed - as a proxy for wider climate change - influence wind and wave energy production and economics. (author)

Effects of lowered pH on marine phytoplankton growth rates

DEFF Research Database (Denmark)

Berge, Terje; Daugbjerg, Niels; Andersen, Betinna Balling

2010-01-01

concentration of seawater. Ocean acidification may potentially both stimulate and reduce primary production by marine phytoplankton. Data are scarce on the response of marine phytoplankton growth rates to lowered pH/increased CO2. Using the acid addition method to lower the seawater pH and manipulate...... the carbonate system, we determined in detail the lower pH limit for growth rates of 2 model species of common marine phytoplankton. We also tested whether growth and production rates of 6 other common species of phytoplankton were affected by ocean acidification (lowered to pH 7.0). The lower pH limits...... statistically similar in the pH range of ~7.0 to 8.5. Our results and literature reports on growth at lowered pH indicate that marine phytoplankton in general are resistant to climate change in terms of ocean acidification, and do not increase or decrease their growth rates according to ecological relevant...

Methanol Production by a Broad Phylogenetic Array of Marine Phytoplankton.

Science.gov (United States)

Mincer, Tracy J; Aicher, Athena C

2016-01-01

Methanol is a major volatile organic compound on Earth and serves as an important carbon and energy substrate for abundant methylotrophic microbes. Previous geochemical surveys coupled with predictive models suggest that the marine contributions are exceedingly large, rivaling terrestrial sources. Although well studied in terrestrial ecosystems, methanol sources are poorly understood in the marine environment and warrant further investigation. To this end, we adapted a Purge and Trap Gas Chromatography/Mass Spectrometry (P&T-GC/MS) method which allowed reliable measurements of methanol in seawater and marine phytoplankton cultures with a method detection limit of 120 nanomolar. All phytoplankton tested (cyanobacteria: Synechococcus spp. 8102 and 8103, Trichodesmium erythraeum, and Prochlorococcus marinus), and Eukarya (heterokont diatom: Phaeodactylum tricornutum, coccolithophore: Emiliania huxleyi, cryptophyte: Rhodomonas salina, and non-diatom heterokont: Nannochloropsis oculata) produced methanol, ranging from 0.8-13.7 micromolar in culture and methanol per total cellular carbon were measured in the ranges of 0.09-0.3%. Phytoplankton culture time-course measurements displayed a punctuated production pattern with maxima near early stationary phase. Stabile isotope labeled bicarbonate incorporation experiments confirmed that methanol was produced from phytoplankton biomass. Overall, our findings suggest that phytoplankton are a major source of methanol in the upper water column of the world's oceans.

Methanol Production by a Broad Phylogenetic Array of Marine Phytoplankton

Science.gov (United States)

Mincer, Tracy J.; Aicher, Athena C.

2016-01-01

Methanol is a major volatile organic compound on Earth and serves as an important carbon and energy substrate for abundant methylotrophic microbes. Previous geochemical surveys coupled with predictive models suggest that the marine contributions are exceedingly large, rivaling terrestrial sources. Although well studied in terrestrial ecosystems, methanol sources are poorly understood in the marine environment and warrant further investigation. To this end, we adapted a Purge and Trap Gas Chromatography/Mass Spectrometry (P&T-GC/MS) method which allowed reliable measurements of methanol in seawater and marine phytoplankton cultures with a method detection limit of 120 nanomolar. All phytoplankton tested (cyanobacteria: Synechococcus spp. 8102 and 8103, Trichodesmium erythraeum, and Prochlorococcus marinus), and Eukarya (heterokont diatom: Phaeodactylum tricornutum, coccolithophore: Emiliania huxleyi, cryptophyte: Rhodomonas salina, and non-diatom heterokont: Nannochloropsis oculata) produced methanol, ranging from 0.8–13.7 micromolar in culture and methanol per total cellular carbon were measured in the ranges of 0.09–0.3%. Phytoplankton culture time-course measurements displayed a punctuated production pattern with maxima near early stationary phase. Stabile isotope labeled bicarbonate incorporation experiments confirmed that methanol was produced from phytoplankton biomass. Overall, our findings suggest that phytoplankton are a major source of methanol in the upper water column of the world’s oceans. PMID:26963515

Methanol Production by a Broad Phylogenetic Array of Marine Phytoplankton.

Directory of Open Access Journals (Sweden)

Tracy J Mincer

Full Text Available Methanol is a major volatile organic compound on Earth and serves as an important carbon and energy substrate for abundant methylotrophic microbes. Previous geochemical surveys coupled with predictive models suggest that the marine contributions are exceedingly large, rivaling terrestrial sources. Although well studied in terrestrial ecosystems, methanol sources are poorly understood in the marine environment and warrant further investigation. To this end, we adapted a Purge and Trap Gas Chromatography/Mass Spectrometry (P&T-GC/MS method which allowed reliable measurements of methanol in seawater and marine phytoplankton cultures with a method detection limit of 120 nanomolar. All phytoplankton tested (cyanobacteria: Synechococcus spp. 8102 and 8103, Trichodesmium erythraeum, and Prochlorococcus marinus, and Eukarya (heterokont diatom: Phaeodactylum tricornutum, coccolithophore: Emiliania huxleyi, cryptophyte: Rhodomonas salina, and non-diatom heterokont: Nannochloropsis oculata produced methanol, ranging from 0.8-13.7 micromolar in culture and methanol per total cellular carbon were measured in the ranges of 0.09-0.3%. Phytoplankton culture time-course measurements displayed a punctuated production pattern with maxima near early stationary phase. Stabile isotope labeled bicarbonate incorporation experiments confirmed that methanol was produced from phytoplankton biomass. Overall, our findings suggest that phytoplankton are a major source of methanol in the upper water column of the world's oceans.

Could a secular increase in organic burial explain the rise of oxygen? Insights from a geological carbon cycle model constrained by the carbon isotope record

Science.gov (United States)

Krissansen-Totton, J.; Kipp, M.; Catling, D. C.

2017-12-01

The stable isotopes of carbon in marine sedimentary rock provide a window into the evolution of the Earth system. Conventionally, a relatively constant carbon isotope ratio in marine sedimentary rocks has been interpreted as implying constant organic carbon burial relative to total carbon burial. Because organic carbon burial corresponds to net oxygen production from photosynthesis, it follows that secular changes in the oxygen source flux cannot explain the dramatic rise of oxygen over Earth history. Instead, secular declines in oxygen sink fluxes are often invoked as causes for the rise of oxygen. However, constant fractional organic burial is difficult to reconcile with tentative evidence for low phosphate concentrations in the Archean ocean, which would imply lower marine productivity and—all else being equal—less organic carbon burial than today. The conventional interpretation of the carbon isotope record rests on the untested assumption that the isotopic ratio of carbon inputs into the ocean reflect mantle isotopic values throughout Earth history. In practice, differing rates of carbonate and organic weathering will allow for changes in isotopic inputs, as suggested by [1] and [2]. However, these inputs can not vary freely because large changes in isotopic inputs would induce secular trends in carbon reservoirs, which are not observed in the isotope record. We apply a geological carbon cycle model to all Earth history, tracking carbon isotopes in crustal, mantle, and ocean reservoirs. Our model is constrained by the carbon isotope record such that we can determine the extent to which large changes in organic burial are permitted. We find both constant organic burial and 3-5 fold increases in organic burial since 4.0 Ga can be reconciled with the carbon isotope record. Changes in the oxygen source flux thus need to be reconsidered as a possible contributor to Earth's oxygenation. [1] L. A. Derry, Organic carbon cycling and the lithosphere, in Treatise on

Coupling effects of abiotic and biotic factors on molecular composition of dissolved organic matter in a freshwater wetland

Energy Technology Data Exchange (ETDEWEB)

He, Wei [Department of Environment and Energy, Sejong University, Seoul 143-747 (Korea, Republic of); Choi, Ilhwan [Water Analysis and Research Center, K-water, 560 Sintanjin-ro, Daedeok-gu, Daejeon 307-711 (Korea, Republic of); Lee, Jung-Joon [Department of Biological Education, Daegu University, Gyungbuk 712-714 (Korea, Republic of); Hur, Jin, E-mail: jinhur@sejong.ac.kr [Department of Environment and Energy, Sejong University, Seoul 143-747 (Korea, Republic of)

2016-02-15

In this study, temporal and spatial variations in five defined molecular size fractions of dissolved organic matter (DOM) were examined for a well preserved wetland (Upo Wetland) and its surrounding areas, and the influencing factors were explored with many biotic and abioic parameters. For each DOM sample, the five size fractions were determined by size-exclusion chromatography coupled with organic carbon detector (SEC-OCD). For 2-year long monthly monitoring, bio-polymers (BP), humic substances (HS), building blocks (BB), low molecular-weight (LMW) neutrals, and LMW acids displayed the median values of 264, 1884, 1070, 1090, and 11 μg-C L{sup −1}, respectively, accounting for 6.2%, 41.7%, 24.5%, 26.4%, and 0.4% of dissolved organic carbon (DOC). The dominant presence of HS indicated that terrestrial input played important roles in DOM composition of the freshwater ecosystem, which contrasted with coastal wetlands in other reports. Both seasonal and periodic patterns in the variations were found only for HS and BB among the size fractions. It was also notable that the sources of HS were seasonally shifted from aquagenic origin in winter to pedogenic origin in summer. The correlations among the size fractions revealed that BB and LMW neutrals might be degradation products from HS and humic-like substances (HS + BB), respectively, while LMW acids, from LMW neutrals. Principle component analysis revealed that the humic-like substances and the aromaticity of DOM were associated with temperature, chlorophyll a, phosphorous, and rainfall, whereas the other fractions and the molecular weight of HS were primarily affected by solar irradiation. Significant correlations between DOM composition and some biotic factors further suggested that DOM may even affect the biological communities, which provides an insight into the potential coupling effects of biotic and abiotic factors on DOM molecular composition in freshwater wetlands. - Highlights: • Humic fractions varied

Coupling effects of abiotic and biotic factors on molecular composition of dissolved organic matter in a freshwater wetland

International Nuclear Information System (INIS)

He, Wei; Choi, Ilhwan; Lee, Jung-Joon; Hur, Jin

2016-01-01

In this study, temporal and spatial variations in five defined molecular size fractions of dissolved organic matter (DOM) were examined for a well preserved wetland (Upo Wetland) and its surrounding areas, and the influencing factors were explored with many biotic and abioic parameters. For each DOM sample, the five size fractions were determined by size-exclusion chromatography coupled with organic carbon detector (SEC-OCD). For 2-year long monthly monitoring, bio-polymers (BP), humic substances (HS), building blocks (BB), low molecular-weight (LMW) neutrals, and LMW acids displayed the median values of 264, 1884, 1070, 1090, and 11 μg-C L"−"1, respectively, accounting for 6.2%, 41.7%, 24.5%, 26.4%, and 0.4% of dissolved organic carbon (DOC). The dominant presence of HS indicated that terrestrial input played important roles in DOM composition of the freshwater ecosystem, which contrasted with coastal wetlands in other reports. Both seasonal and periodic patterns in the variations were found only for HS and BB among the size fractions. It was also notable that the sources of HS were seasonally shifted from aquagenic origin in winter to pedogenic origin in summer. The correlations among the size fractions revealed that BB and LMW neutrals might be degradation products from HS and humic-like substances (HS + BB), respectively, while LMW acids, from LMW neutrals. Principle component analysis revealed that the humic-like substances and the aromaticity of DOM were associated with temperature, chlorophyll a, phosphorous, and rainfall, whereas the other fractions and the molecular weight of HS were primarily affected by solar irradiation. Significant correlations between DOM composition and some biotic factors further suggested that DOM may even affect the biological communities, which provides an insight into the potential coupling effects of biotic and abiotic factors on DOM molecular composition in freshwater wetlands. - Highlights: • Humic fractions varied

Marine chemistry and tracer applications of radiocaesium

International Nuclear Information System (INIS)

McKay, W.A.

1983-03-01

The general aims of this project were to study the marine chemistry of Windscale-derived radiocaesium and to continue previous research at Glasgow University on its tracer application in Scottish waters and sediments. It was found that a considerable percentage of sediment-associated 137 Cs (approximately 12 to 50%) may be contained by carbonate, oxide and organic coatings which appear to be relatively stable under a wide range of redox conditions. Whilst the partitioning of 137 Cs is related to the concentration of these oxides, organics and, to a much lesser extent, carbonates, their function is predominantly to prevent 137 Cs release from clay mineral exchange sites. 137 Cs activities per unit sediment weight were highest in the clay fraction with its uptake by coarse sediments appearing to be controlled by clay minerals coatings formed in the marine environment and cemented partly by oxides and organics. Though the sites sampled (Clyde Sea Area (C.S.A.) and L. Etive) encompassed a wide range of sediment types, the range of estimated 137 Cs distribution coefficients (K D ) was relatively small (360 to 890). Coatings may thus have more influence on K d s in the coastal marine environment than particle size distributions. Apparent concentration factors (C F s) of X325, X2800 and X1910 were determined for the associated carbonate, oxide and organic coatings, for a site off Greenock. Use of 'dry' sediments appeared to produce considerably overestimated values for the degree of 137 Cs fixation. Thus 'wet' sediments were used in these studies. Over the 1978-1981 period, approximately 35% of Windscale output passed through the C.S.A., diluted 26 times during transit. An estimated 0.3% of this water-borne inventory was removed into the sediments. Windscale to C.S.A. transit and residence times of 4 and 12 months respectively were derived. Monitoring the deeper levels of L. Etive allowed 137 Cs to be used to trace patterns of w

Phytoplankton and some abiotic features of El-Bardawil Lake, Sinai ...

African Journals Online (AJOL)

Phytoplankton and some abiotic features of El-Bardawil Lake, Sinai, Egypt. H Touliabah, HM Safik, MM Gab-Allah, WD Taylor. Abstract. El-Bardawil Lake is a large coastal lagoon on the Mediterranean coast of Sinai, Egypt. Although it is shallow and oligotrophic, it is one of the most important lakes in Egypt as a source of ...

Influence of abiotic stresses on the winter wheat sprouting plants

Czech Academy of Sciences Publication Activity Database

Bláha, L.; Hnilička, F.; Kadlec, P.; Smrčková-Jankovská, P.; Macháčková, Ivana; Sychrová, E.; Kohout, Ladislav

2008-01-01

Roč. 3, č. 3 (2008), s. 389-390 ISSN 1125-4718. [Congress of the European Society for Agronomy /10./. 15.09.2008-19.09.2008, Bologna] R&D Projects: GA MZe QF3056 Institutional research plan: CEZ:AV0Z50380511; CEZ:AV0Z40550506 Keywords : brassinosteroids * abiotic stress * emergency Subject RIV: CC - Organic Chemistry

Feeding in deep-sea demosponges: Influence of abiotic and biotic factors

Science.gov (United States)

Robertson, Leah M.; Hamel, Jean-François; Mercier, Annie

2017-09-01

In shallow benthic communities, sponges are widely recognized for their ability to contribute to food webs by cycling nutrients and mediating carbon fluxes through filter feeding. In comparison, little is known about filter feeding in deep-sea species and how it may be modulated by environmental conditions. Here, a rare opportunity to maintain live healthy deep-sea sponges for an extended period led to a preliminary experimental study of their feeding metrics. This work focused on demosponges collected from the continental slope of eastern Canada at 1000 m depth. Filtration rates (as clearance of phytoplankton cells) at holding temperature (6 °C) were positively correlated with food particle concentration, ranging on average from 18.8 to 160.6 cells ml-1 h-1 at nominal concentrations of 10,000-40,000 cells ml-1. Cell clearance was not significantly affected by decreasing seawater temperature, from 6 °C to 3 °C or 0 °C, although two of the sponges showed decreased filtration rates. Low pH ( 7.5) and the presence of a predatory sea star markedly depressed or inhibited feeding activity in all sponges tested. While performed under laboratory conditions on a limited number of specimens, this work highlights the possible sensitivity of deep-sea demosponges to various types and levels of biotic and abiotic factors, inferring a consequent vulnerability to natural and anthropogenic disturbances.

Quantification of the carbonaceous matter origin in submicron marine aerosol by 13C and 14C isotope analysis

Directory of Open Access Journals (Sweden)

M. Ramonet

2011-08-01

Full Text Available Dual carbon isotope analysis of marine aerosol samples has been performed for the first time demonstrating a potential in organic matter apportionment between three principal sources: marine, terrestrial (non-fossil and fossil fuel due to unique isotopic signatures. The results presented here, utilising combinations of dual carbon isotope analysis, provides conclusive evidence of a dominant biogenic organic fraction to organic aerosol over biologically active oceans. In particular, the NE Atlantic, which is also subjected to notable anthropogenic influences via pollution transport processes, was found to contain 80 % organic aerosol matter of biogenic origin directly linked to plankton emissions. The remaining carbonaceous aerosol was of terrestrial origin. By contrast, for polluted air advected out from Europe into the NE Atlantic, the source apportionment is 30 % marine biogenic, 40 % fossil fuel, and 30 % continental non-fossil fuel. The dominant marine organic aerosol source in the atmosphere has significant implications for climate change feedback processes.

Quantification of the carbonaceous matter origin in submicron marine aerosol by 13C and 14C isotope analysis

Science.gov (United States)

Ceburnis, D.; Garbaras, A.; Szidat, S.; Rinaldi, M.; Fahrni, S.; Perron, N.; Wacker, L.; Leinert, S.; Remeikis, V.; Facchini, M. C.; Prevot, A. S. H.; Jennings, S. G.; Ramonet, M.; O'Dowd, C. D.

2011-08-01

Dual carbon isotope analysis of marine aerosol samples has been performed for the first time demonstrating a potential in organic matter apportionment between three principal sources: marine, terrestrial (non-fossil) and fossil fuel due to unique isotopic signatures. The results presented here, utilising combinations of dual carbon isotope analysis, provides conclusive evidence of a dominant biogenic organic fraction to organic aerosol over biologically active oceans. In particular, the NE Atlantic, which is also subjected to notable anthropogenic influences via pollution transport processes, was found to contain 80 % organic aerosol matter of biogenic origin directly linked to plankton emissions. The remaining carbonaceous aerosol was of terrestrial origin. By contrast, for polluted air advected out from Europe into the NE Atlantic, the source apportionment is 30 % marine biogenic, 40 % fossil fuel, and 30 % continental non-fossil fuel. The dominant marine organic aerosol source in the atmosphere has significant implications for climate change feedback processes.

Long-term paradoxical aftermath of the Early Permian climatic warming in the Northern Hemisphere: biotic and abiotic aspects

Science.gov (United States)

Kossovaya, Olga

2014-05-01

Far distant influence of the climatic changes is rather variable and sometimes paradoxical. One of the examples is the flourish of the Photozoan association in the Northern Hemisphere during time of Southern Hemisphere glaciation (P2) and it following collapse in the interglacial phase. Modelling of the possible extrinsic factors using isotope data from the Urals has demonstrated the complex succession of abiotic changes including circulation changes and penetration of cold water from Northern Panthalassa. The invasion of cold water into the Uralian Basin led to disarray of the coastal circulation and rising of cold water via upwelling. It was resulted by change of biota and wide distribution of the heterozoan biota. The replacement took place both in carbonate ramp and reef facies. The depletion of δ18O during the early Artinskian was demonstrated by analyses of the biogenic carbonates from Belaya Gora (Most) section. This coincides with the previously known trend for d18O shown for low latitudes from the Sakmarian to early Artinskian with a minimum during the middle Artinskian and is in accordance with recent data from the South Urals. The heterochrony of the impact in the far-distant and discrete photozoan assemblages depends on their bathymetric and paleo-latitudinal position.

Poaceae vs. Abiotic Stress: Focus on Drought and Salt Stress, Recent Insights and Perspectives

Directory of Open Access Journals (Sweden)

Simone Landi

2017-07-01

Full Text Available Poaceae represent the most important group of crops susceptible to abiotic stress. This large family of monocotyledonous plants, commonly known as grasses, counts several important cultivated species, namely wheat (Triticum aestivum, rice (Oryza sativa, maize (Zea mays, and barley (Hordeum vulgare. These crops, notably, show different behaviors under abiotic stress conditions: wheat and rice are considered sensitive, showing serious yield reduction upon water scarcity and soil salinity, while barley presents a natural drought and salt tolerance. During the green revolution (1940–1960, cereal breeding was very successful in developing high-yield crops varieties; however, these cultivars were maximized for highest yield under optimal conditions, and did not present suitable traits for tolerance under unfavorable conditions. The improvement of crop abiotic stress tolerance requires a deep knowledge of the phenomena underlying tolerance, to devise novel approaches and decipher the key components of agricultural production systems. Approaches to improve food production combining both enhanced water use efficiency (WUE and acceptable yields are critical to create a sustainable agriculture in the future. This paper analyzes the latest results on abiotic stress tolerance in Poaceae. In particular, the focus will be directed toward various aspects of water deprivation and salinity response efficiency in Poaceae. Aspects related to cell wall metabolism will be covered, given the importance of the plant cell wall in sensing environmental constraints and in mediating a response; the role of silicon (Si, an important element for monocots' normal growth and development, will also be discussed, since it activates a broad-spectrum response to different exogenous stresses. Perspectives valorizing studies on landraces conclude the survey, as they help identify key traits for breeding purposes.

The regulation of coralline algal physiology, an in situ study of Corallina officinalis (Corallinales, Rhodophyta)

Science.gov (United States)

Williamson, Christopher James; Perkins, Rupert; Voller, Matthew; Yallop, Marian Louise; Brodie, Juliet

2017-10-01

Calcified macroalgae are critical components of marine ecosystems worldwide, but face considerable threat both from climate change (increasing water temperatures) and ocean acidification (decreasing ocean pH and carbonate saturation). It is thus fundamental to constrain the relationships between key abiotic stressors and the physiological processes that govern coralline algal growth and survival. Here we characterize the complex relationships between the abiotic environment of rock pool habitats and the physiology of the geniculate red coralline alga, Corallina officinalis (Corallinales, Rhodophyta). Paired assessment of irradiance, water temperature and carbonate chemistry, with C. officinalis net production (NP), respiration (R) and net calcification (NG) was performed in a south-western UK field site, at multiple temporal scales (seasonal, diurnal and tidal). Strong seasonality was observed in NP and night-time R, with a Pmax of 22.35 µmol DIC (g DW)-1 h-1, Ek of 300 µmol photons m-2 s-1 and R of 3.29 µmol DIC (g DW)-1 h-1 determined across the complete annual cycle. NP showed a significant exponential relationship with irradiance (R2 = 0.67), although was temperature dependent given ambient irradiance > Ek for the majority of the annual cycle. Over tidal emersion periods, dynamics in NP highlighted the ability of C. officinalis to acquire inorganic carbon despite significant fluctuations in carbonate chemistry. Across all data, NG was highly predictable (R2 = 0.80) by irradiance, water temperature and carbonate chemistry, providing a NGmax of 3.94 µmol CaCO3 (g DW)-1 h-1 and Ek of 113 µmol photons m-2 s-1. Light NG showed strong seasonality and significant coupling to NP (R2 = 0.65) as opposed to rock pool water carbonate saturation. In contrast, the direction of dark NG (dissolution vs. precipitation) was strongly related to carbonate saturation, mimicking abiotic precipitation dynamics. Data demonstrated that C. officinalis is adapted to both long

Differentiating biotic from abiotic methane genesis in hydrothermally active planetary surfaces.

Science.gov (United States)

Oze, Christopher; Jones, L Camille; Goldsmith, Jonas I; Rosenbauer, Robert J

2012-06-19

Molecular hydrogen (H(2)) is derived from the hydrothermal alteration of olivine-rich planetary crust. Abiotic and biotic processes consume H(2) to produce methane (CH(4)); however, the extent of either process is unknown. Here, we assess the temporal dependence and limit of abiotic CH(4) related to the presence and formation of mineral catalysts during olivine hydrolysis (i.e., serpentinization) at 200 °C and 0.03 gigapascal. Results indicate that the rate of CH(4) production increases to a maximum value related to magnetite catalyzation. By identifying the dynamics of CH(4) production, we kinetically model how the H(2) to CH(4) ratio may be used to assess the origin of CH(4) in deep subsurface serpentinization systems on Earth and Mars. Based on our model and available field data, low H(2)/CH(4) ratios (less than approximately 40) indicate that life is likely present and active.