LOCUS KY325483 10688 bp RNA linear VRL 09-JUN-2017
DEFINITION UNVERIFIED: Zika virus isolate Zika
virus/H.sapiens-wt/USA/2016/FLUR015 polyprotein-like gene, complete
sequence.
ACCESSION KY325483
VERSION KY325483.1
DBLINK BioProject: PRJNA356429
KEYWORDS UNVERIFIED.
SOURCE Zika virus
ORGANISM Zika virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes;
Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus
zikaense.
REFERENCE 1 (bases 1 to 10688)
AUTHORS Grubaugh,N.D., Ladner,J.T., Kraemer,M.U.G., Dudas,G., Tan,A.L.,
Gangavarapu,K., Wiley,M.R., White,S., Theze,J., Magnani,D.M.,
Prieto,K., Reyes,D., Bingham,A.M., Paul,L.M., Robles-Sikisaka,R.,
Oliveira,G., Pronty,D., Barcellona,C.M., Metsky,H.C.,
Baniecki,M.L., Barnes,K.G., Chak,B., Freije,C.A., Gladden-Young,A.,
Gnirke,A., Luo,C., MacInnis,B., Matranga,C.B., Park,D.J., Qu,J.,
Schaffner,S.F., Tomkins-Tinch,C., West,K.L., Winnicki,S.M.,
Wohl,S., Yozwiak,N.L., Quick,J., Fauver,J.R., Khan,K., Brent,S.E.,
Reiner,R.C. Jr., Lichtenberger,P.N., Ricciardi,M.J., Bailey,V.K.,
Watkins,D.I., Cone,M.R., Kopp,E.W. Jr., Hogan,K.N., Cannons,A.C.,
Jean,R., Monaghan,A.J., Garry,R.F., Loman,N.J., Faria,N.R.,
Porcelli,M.C., Vasquez,C., Nagle,E.R., Cummings,D.A.T., Stanek,D.,
Rambaut,A., Sanchez-Lockhart,M., Sabeti,P.C., Gillis,L.D.,
Michael,S.F., Bedford,T., Pybus,O.G., Isern,S., Palacios,G. and
Andersen,K.G.
TITLE Genomic epidemiology reveals multiple introductions of Zika virus
into the United States
JOURNAL Nature (2017) In press
PUBMED 28538723
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 10688)
AUTHORS Ladner,J., Wiley,M., White,S., Nagle,E., Prieto,K., Reyes,D.,
Pfeffer,B., Gills,L. and Palacios,G.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2016) Center for Genome Sciences, United States
Army Medical Research Institute for Infectious Diseases (USAMRIID),
1425 Porter Street, Fort Detrick, MD 21702, USA
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
FEATURES Location/Qualifiers
source 1..10688
/organism="Zika virus"
/mol_type="genomic RNA"
/isolate="Zika virus/H.sapiens-wt/USA/2016/FLUR015"
/isolation_source="urine"
/host="Homo sapiens"
/db_xref="taxon:64320"
/country="USA: Florida"
/collection_date="24-Aug-2016"
misc_feature 95..10366
/note="similar to polyprotein"
gap 2007..2134
/estimated_length=128
gap 3741..4520
/estimated_length=780
gap 5467..5697
/estimated_length=231
gap 6690..6826
/estimated_length=137
gap 7037..7266
/estimated_length=230
BASE COUNT 2509 a 1918 c 2583 g 1867 t
ORIGIN
1 tgtgaatcag actgcgacag ttcgagtttg aagcgaaagc tagcaacagt atcaacaggt
61 tttattttgg atttggaaac gagagtttct ggtcatgaaa aacccaaaaa agaaatccgg
121 aggattccgg attgtcaata tgctaaaacg cggagtagcc cgtgtgagcc cctttggggg
181 cttgaagagg ctgccagccg gacttctgct gggtcatggg cccatcagga tggtcttggc
241 gattctagcc tttttgagat tcacggcaat caagccatca ctgggtctca tcaatagatg
301 gggttcagtg gggaaaaaag aggctatgga aataataaag aagttcaaga aagatctggc
361 tgccatgctg agaataatca atgctaggaa ggagaagaag agacgaggcg cagatactag
421 tgtcggaatt gttggcctcc tgctgaccac agctatggca gcggaggtca ctagacgtgg
481 gagtgcatac tacatgtact tggacagaaa cgatgctggn nnnnnnnnnn ctttcccaac
541 cacattgggg atgaataagt gttatataca gatcatggat cttggacaca tgtgtgatgc
601 caccatgagc tatgaatgcc ctatgctgga tgagggggtg gaaccagatg acgtcgattg
661 ttggtgcaac acgacgtcaa cttgggttgt gtacggaacc tgccatcaca aaaaaggtga
721 agcacggaga tctagaagag ctgtgacgct cccctcccat tccactagga agctgcaaac
781 gcggtcgcaa acctggttgg aatcaagaga atacacaaag cacttgatta gagtcgaaaa
841 ttggatattc aggaaccctg gcttcgcgtt agcagcagct gccatcgctt ggcttttggg
901 aagctcaacg agccaaaaag ttatatactt ggtcatgata ctgctgattg ccccggcata
961 cagcatcagg tgcataggag tcagcaatag ggactttgtg gaaggtatgt caggtgggac
1021 ttgggttgat gttgtcttgg aacatggagg ctgtgtcacc gtaatggcac aggacaaacc
1081 gactgtcgac atagagctgg ttacaacaac agtcagcaac atggcggagg taagatccta
1141 ctgctatgag gcatcaatat cagacatgnc ttcggacagc cgctgcccaa cacaaggtga
1201 agcctacctt gacaagcaat cagacactca atatgtctgc aaaagaacgt tagtggacag
1261 aggctgggga aatggatgtg gactttttgg caaagggagc ctggtgacat gcgctaagtt
1321 tgcatgctcc aagaaaatga ccgggaagag catccagcca gagaatctgg agtaccggat
1381 aatgctgtca gttcatggct cccagcacag tgggatgatc gttaatgaca caggacatga
1441 aactgatgag aatagagcga aggttgagat aacgcccaat tcaccnnnnn nnnnnnnnnn
1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnacaggcc ttgacttttc
1561 agatttgtat tacttgacta tgaataacaa gcactggttg gttcacaagg agtggttcca
1621 cgacattcca ttaccttggc acgctggggc agacaccgnn nnnnnnnnnn nnnnnnnnnn
1681 nnnnnnnnnn nnnnngttca aggacgcaca tgccaaaagg caaactgtcg tggttctagg
1741 gagtcaagaa ggagcagttc acacggccct tgctggagct ctggaggctg agatggatgg
1801 tgcaaaggga aggctgtcct ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag
1861 attgaagggc gtgtcatact ccttgtgtac cgcagcgttc acattcacca agatcccggc
1921 tgaaacactg cacgggacag tcacagtgga ggtacagtac gcagggacag atggaccttg
1981 caaggttcca gctcagatgg cggtggnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngtcggg gagaagaaga tcacccacca
2161 ctggcacagg agtggcagca ccattggaaa agcatttgaa gccactgtga gaggtgccaa
2221 gagaatggca gtcttgggag atacagcctg ggactttgga tcagttggag gcgctctcaa
2281 ctcattgggc aagggcatcc atcaaatttt tggagcagct ttcaaatcat tgtttggagg
2341 aatgtcctgg ttctcacaaa tcctcattgg aacgttgctg atgtggttgg gtctgaacac
2401 aaagaatgga tctatttccc tcatgtgctt ggccttaggg ggagtgttga tcttcttatc
2461 cacagccgtc tctgctgatg tggggtgctc ggtggacttc tcaaagaagg agacgagatg
2521 cggtacaggg gtgttcgtct ataacgacgt tgaagcctgg agggacaggt acaagtacca
2581 tcctgactcc ccccgtagat tggcagcagc agtcaagcaa gcctgggaag atggtatctg
2641 cgggatctcc tctgtttcaa gaatggaaaa catcatgtgg agatcagtag aaggggagct
2701 caatgcaatc ctggaagaga atggagttca actgacggtc gttgtgggat ctgtaaaaaa
2761 ccccatgtgg agaggtccac agagattgcc cgtgcctgtg aacgagctgc cccacggctg
2821 gaaggcttgg gggaaatcgt acttcgttag agcagcaaag acaaataaca gctttgtcgt
2881 ggatggtgac acactgaagg aatgcccact caaacataga gcatggaaca gctttcttgt
2941 ggaggatcat gggttcgggg tatttcacac tagtgtctgg ctcaaggtta gagaagatta
3001 ttcattagag tgtgatccag ccgttattgg aacagctgtt aagggaaagg aggctgtaca
3061 cagtgatcta ggctactgga ttgagagtga gaagaatgac acatggaggc tgaagagggc
3121 ccatctgatc gagatgaaaa catgtgaatg gccaaagtcc cacacattgt ggacagatgg
3181 aatagaagag agtgatctga tcatacccaa gtctttagct gggccactca gccatcacaa
3241 taccagagag ggctacagga cccaaatgaa agggccatgg cacagtgaag agcttgaaat
3301 tcggtttgag gaatgcccag gcactaaggt ccacgtggag gaaacatgtg gaacaagagg
3361 accatctctg agatcaacca ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga
3421 gtgcacaatg cccccactgt cgttccgggc taaagatggc tgttggtatg gaatggagat
3481 aaggcccagg aaagaaccag aaagcaactt agtaaggtca gtggtgactg caggatcaac
3541 tgatcacatg gatcacttct cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg
3601 gctgaagaag agaatgacca caaagatcat cataagcaca tcaatggcag tgctggtagc
3661 tatgatcctg ggaggatttt caatgagtga cctggctaag cttgcaattt tgatgggtgc
3721 caccttcgcg gaaatgaaca nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
4501 nnnnnnnnnn nnnnnnnnnn tgaccatctg tggcatgaac ccaatagcca taccctttgc
4561 agctggagcg tggtacgtat acgtgaagac tggaaaaagg agtggtgctc tatgggatgt
4621 cctgctccca aggaagtaaa aaagggggag accacagatg gagtgtacag agtaatgact
4681 cgtagactgc taggttcaac acaagttgga gtgggagtta tgcaagaggg ggtctttcac
4741 actatgtggc acgtcacaaa aggatccgcg ctgagaagcg gtgaagggag acttgatcca
4801 tactggggag atgtcaagca ggatctggtg tcatactgtg gtccatggaa gctagatgcc
4861 gcctgggacg ggcacagcga ggtgcagctc ttggccgtgc cccccggaga gagagcgagg
4921 aacatccaga ctctgcccgg aatatttaag acaaaggatg gggacattgg agcggttgcg
4981 ctggattacc cagcaggaac ttcaggatct ccaatcctag acaagnnngg gagagtgata
5041 ggactttatg gcaatggggt cgtgatcaaa aatgggagtt atgttagtcc atcacccaag
5101 ggaggaggga ggaagagact cctgttgagt gcttcgagcc ttcgatgctg aagaagaagc
5161 agctaactgt cttagacttg catcctggag ctgggaaaac caggagagtt cttcctgaaa
5221 tagtccgtga agctataaaa acaagactcc gtactgtgat cttagctcca accagggttg
5281 tcgctgctga aatggaggaa gcccttagag ggcttccagt gcgttatatg acaacagcag
5341 tcaatgtcac ccattctgga acagaaatcg tcgacttaat gtgccatgcc accttcactt
5401 cacgtctact acagccaatc agagtcccca actataatct gtatattatg gatgaggccc
5461 acttcannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnngga
5701 acggcaatga gatcgcagct tgtctgacaa aggctggaaa acgggtcata cagctcagca
5761 gaaagacttt tgagacagag ttccagaaaa caaaacatca agagtgggac tttgtcgtga
5821 caaccgacat ttcagagatg ggcgccaact ttaaagctga ccgtgtcata gattccagga
5881 gatgcctaaa gccggtcata cttgatggcg agagagtcat tctggctgga cccatgcctg
5941 tcacacatgc cagcgctgcc cagaggaggg ggcgcatagg caggaatccc aacaaacctg
6001 gagatgagta tctgtatgga ggtgggtgcg cagagactga cgaagaccat gcacactggc
6061 ttgaagcaag aatgctcctt gacaatattt acctccaaga tggcctcata gcctcgctct
6121 atcgacctga ggccgacaaa gtagcagcca ttgagggaga gttcaagctt aggacggagc
6181 aaaggaagac ctttgtggaa ctcatgaaaa gaggagatct tcctgtttgg ctggcctatc
6241 aggttgcatc tgccggaata acttacacag atagaagatg gtgctttgat ggcacgacca
6301 acaacaccat aatggaagac agtgtgccgg cagaggtgtg gaccagacac ggagagaaaa
6361 gagtgctcaa accgaggtgg atggacgcca gagtttgttc agatcatgcg gccctgaagt
6421 cattcaagga gtttgccgct gggaaaagag gagcggcttt tggagtgatg gannnnnnnn
6481 nnnnnnnnnn nnnnnnnnnn nnnnnnagat tccaggaanc cattgacaac ctcgctgtgc
6541 tcatgcgggc agagactgga agcaggcctt acaaagccgc ggcggcccaa ttgccggaga
6601 ccctagagac cattatgctt ttggggttgc tgggaacagt ctcgctggga atctttttcg
6661 tcttgatgag gaacaagggc atagggaagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
6721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
6781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnaaga tctccccagg
6841 acaaccaaat ggcaatcatc atcatggtag cagtaggtct tctaggcttg atcaccgcca
6901 atgaactcgg atgnnnnnnn nnnnnnaaga gtgacctaag ccatctaatg ggaaggagag
6961 aggagggagc aaccatagga ttctcaatgg acattgacct gcggccagcc tcagcttggg
7021 ccatctatgc tgccttnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7261 nnnnnntgat cccagggctg caggcagcag ctgcgcgtgc tgcccagaag agaacggcag
7321 ctggcatcat gaagaaccct gttgtggatg gaatagtggt gactgacatt gacacaatga
7381 caattgaccc ccaagtggag aaaaagatgg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnctnnnncc ntnatcacag
7501 ccgcaacttc cactttgtgg gaaggctctc cgaacaagta ctggaactcc tctacagcca
7561 cttcactgtg taacattttt aggggaagtt acttggctgg agcttctcta atctacacag
7621 taacaagaaa cgctggcttg gtcaagagac gtgggggtgg aacaggagag accctgggag
7681 agaaatggaa ggcccgcttg aaccagatgt cggccctgga gttctactcc tacaaaaagt
7741 caggcatcac cgaggtgtgc agagaagagg cccgccgcgc cctcaaggac ggtgtggcaa
7801 cgggaggcca tgctgtgtcc cgaggaagtg caaagctgag atggttggtg gagcggggat
7861 acctgcagcc ctatggaaag gtcattgatc ttggatgtng cngagggngc nggagtnact
7921 acgccgccnc catccgcaaa gttcaagaag tgaaaggata cacaaaagga ggccctggnn
7981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnacat agtccgtctc aagagtgggg
8041 tggacgtctt tcatatggcg gctgagccgt gtgacacgtt gctatgtgac ataggtgagt
8101 catcatctag tcctgaagtg gaagaagcac ggacgctcag agtcctctcc atggtggggg
8161 attggcttga aaaaagacca ggagcctttt gtataaaagt gttgtgccca tacaccagca
8221 ctatgatgga aaccctggag cgactgcagc gtaggtatgg gggaggactg gtcagagtgc
8281 cactctcccg caactctaca catgagatgt actgggtctc tggagcgaaa agcaacacca
8341 taaaaagtgt gtccaccang nnncngcncc tcttggggcg catggacggg cctaggaggc
8401 cagtgaaata tgaggaggat nnnnnnnnnn nnnnnnnnac gcgggctgtg gtaagctgcg
8461 ctgaagctcc caacatgaag atcattggta accgcattga aaggatccgc agtgagcacg
8521 cggaaacgtg gttctttgac gagaaccacc catataggac atgggcttac catggaagct
8581 atgaggcccn cacacaaggg tcagcatcct ctctagtaaa cggggttgtc aggctcctgt
8641 caaaaccctg ggatgtggtg actggagtca caggaatagc catgaccgac accacaccgt
8701 atggtcagca aagagttttc aaggaaaaag tggacactag ggtgccagac ccccaagaag
8761 gcactcgtca ggttatgagc atggtctctt cctggttgtg gaaagagcta ggtaaacaca
8821 aacggccacg agtctgtacc aaagaagagt tcatcaacaa ggttcgtagc aatgcagcat
8881 taggggcaat atttgaagag gaaaaagagt ggaagactgc agtggaagct gtgaacgatc
8941 caaggttctg ggctctagtg gacaaggaaa gagagcacca cctgagagga gagtgccaga
9001 gttgtgtgta caacatgatg ggaaaaagag aaaagaaaca aggggaattt ggaaaggcca
9061 agggcagccg cgccatctgg tatatgtggc taggggctag atttctagag ttcgaagccc
9121 ttggattctt gaacgaggat cactggatgg ggagagagaa ctcaggaggt ggtgttgaag
9181 ggctgggatt acaaagactc ggatatgtcc tagaagagat gagtcgcata ccaggaggaa
9241 ggatgtatgc agatgacact gctggctggg atacccgcat cagcaggttt gatctagaga
9301 atgaagctct aatcaccaac caaatggaga aagggcacag ggccttggca ttggccataa
9361 tcaagtacac ataccaaaac aaagtggtaa aggtccttag accagctgaa aaagggaaaa
9421 cagttatgga cattatttcg agacaagacc aaagggggag cggacaagtt gtcacttacg
9481 ctcttaacac atttaccaac ctagtggtgc aactcattcg gaatatggag gctgaggaag
9541 ttctagagat gcaagacttg tggctgctgc ggaggtcaga gaaagtgacc aactggttgc
9601 agagcaacgg atgggatagg ctcaaacgaa tggcagtcag tggagatgat tgcgttgtga
9661 agccaattga tgataggttt gcacatgccc tcaggttctt gaatgatatg ggaaaagtta
9721 ggaaggacac acaagagtgg aaaccctcaa ctggatggga caactgggaa gaagttccgt
9781 tttgctccca ccacttcaac aagctccatc tcaaggacgg gaggtccatt gtggttccct
9841 gccgccacca agatgaactg attggccggg cccgcgtctc tccaggggcg ggatggagca
9901 tccgggagac tgcttgccta gcaaaatcat atgcgcaaat gtggcagctc ctttatttcc
9961 acagaaggga cctccgactg atggccaatg ccatttgttc atctgtgcca gttgactggg
10021 ttccaactgg gagaactacc tggtcaatcc atggaaaggg agaatggatg accattgaag
10081 acatgcttgt ggtgtggaac agagtgtgga ttgaggagaa cgaccacatg gaagacaaga
10141 ccccagttac gaaatggaca gacattccct atttgggaaa aagggaagac ttgtggtgtg
10201 gatctctcat agggcacaga ccgcgcacca cctgggctga gaacattaaa aacacagtca
10261 acatggtgcg caggatcata ggtgaggaag aaaagtacat ggactaccta tccacccaag
10321 tccgctactt gggtgaagaa gggtctacac ctggagtgct gtaagcacca atcttaatgt
10381 tgtcaggcct gctagtcagc cacagcttgg ggaaagctgt gcagcctgtg acccccccag
10441 gagaagctgg gaaaccaagc ctatagtcag gccgagaacg ccatggcacg gaagaagcca
10501 tgctgcctgt gagcccctca gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc
10561 aggatgggaa aagaaggtgg cgaccttccc cacccttcaa tctggggcct gaactggaga
10621 tcagctgtgg atctccagaa gagggactag tggttagagg agaccccccg gaaaacgcaa
10681 aacagcat
//