A Proteomics Sample Preparation Method for Mature, Recalcitrant Leaves of Perennial Plants

Science.gov (United States)

Na, Zhang; Chengying, Lao; Bo, Wang; Dingxiang, Peng; Lijun, Liu

2014-01-01

Sample preparation is key to the success of proteomics studies. In the present study, two sample preparation methods were tested for their suitability on the mature, recalcitrant leaves of six representative perennial plants (grape, plum, pear, peach, orange, and ramie). An improved sample preparation method was obtained: Tris and Triton X-100 were added together instead of CHAPS to the lysis buffer, and a 20% TCA-water solution and 100% precooled acetone were added after the protein extraction for the further purification of protein. This method effectively eliminates nonprotein impurities and obtains a clear two-dimensional gel electrophoresis array. The method facilitates the separation of high-molecular-weight proteins and increases the resolution of low-abundance proteins. This method provides a widely applicable and economically feasible technology for the proteomic study of the mature, recalcitrant leaves of perennial plants. PMID:25028960

A proteomics sample preparation method for mature, recalcitrant leaves of perennial plants.

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Deng Gang

Full Text Available Sample preparation is key to the success of proteomics studies. In the present study, two sample preparation methods were tested for their suitability on the mature, recalcitrant leaves of six representative perennial plants (grape, plum, pear, peach, orange, and ramie. An improved sample preparation method was obtained: Tris and Triton X-100 were added together instead of CHAPS to the lysis buffer, and a 20% TCA-water solution and 100% precooled acetone were added after the protein extraction for the further purification of protein. This method effectively eliminates nonprotein impurities and obtains a clear two-dimensional gel electrophoresis array. The method facilitates the separation of high-molecular-weight proteins and increases the resolution of low-abundance proteins. This method provides a widely applicable and economically feasible technology for the proteomic study of the mature, recalcitrant leaves of perennial plants.

Interference between perennial grassland and Lavandula stoechas subsp. pedunculata seedlings: a case of spatial segregation cause by competition

Science.gov (United States)

Sánchez, Ana M.; Peco, Begoña

2004-07-01

This paper analyses the relationship between Lavandula stoechas subsp. pedunculata, a common Mediterranean scrub species in central Iberia, and perennial grasslands. While Lavandula gives rise to almost monospecific formations in intermediate and upper hill zones, perennial grasses occupy the low areas. The proposed explanatory hypothesis for this spatial distribution is that the scrub is unable to establish itself in grasslands with heavy spatial occupation. We designed two experiments to test this hypothesis, one which analysed the effect of perennial grass cover on Lavandula establishment, and another which focused on its influence on previously implanted seedling survival and growth, distinguishing the effect of shoot and root interference. The results show negative interference during establishment and later in the use of light and nutrients. This results in a very low overall survival probability, with only 1.4% of seedlings surviving the first growth period. This low success rate explains the existence of a clear spatial segregation between scrub patches and perennial-dominated grasslands.

An Architecture for a Wide Area Distributed System

NARCIS (Netherlands)

Homburg, P.; Steen, M.R. van; Tanenbaum, A.S.

1996-01-01

Distributed systems provide sharing of resources and information over a computer network. A key design issue that makes these systems attractive is that all aspects related to distribution are transparent to users. Unfortunately, general-purpose wide area distributed systems that allow users to

Determination of microbial protein in perennial ryegrass silage

NARCIS (Netherlands)

Driehuis, F.; Wikselaar, van P.G.

2001-01-01

The microbial matter fraction was determined in perennial ryegrass silages of different dry-matter (DM) contents, ensiled with or without Lactobacillus plantarum. 15N-Leucine and the bacterial cell wall constituent diaminopimelic acid (DAPA) were used as markers for microbial-N. Perennial ryegrass

Perennial Grass Bioenergy Cropping on Wet Marginal Land

NARCIS (Netherlands)

Das, Srabani; Teuffer, Karin; Stoof, Cathelijne R.; Walter, Michael F.; Walter, M.T.; Steenhuis, Tammo S.; Richards, Brian K.

2018-01-01

The control of soil moisture, vegetation type, and prior land use on soil health parameters of perennial grass cropping systems on marginal lands is not well known. A fallow wetness-prone marginal site in New York (USA) was converted to perennial grass bioenergy feedstock production. Quadruplicate

Widely distributed SEP events and pseudostreamers

Science.gov (United States)

Panasenco, O.; Panasenco, A.; Velli, M.

2017-12-01

Our analysis of the pseudostreamer magnetic topology reveals new interesting implications for understanding SEP acceleration in CMEs. The possible reasons for the wide distribution of some SEP events can be the presence of pseudostreamers in the vicinity of the SEP source region which creates conditions for the existence of strong longitudinal spread of energetic particles as well as an anomalous longitudinal solar wind magnetic field component. We reconstructed the 3D magnetic configurations of pseudostreamers with a potential field source surface (PFSS) model, which uses as a lower boundary condition the magnetic field derived from an evolving surface-flux transport model. In order to estimate the possible magnetic connections between the spacecraft and the SEP source region, we used the Parker spiral, ENLIL and PFSS models. We found that in cases of the wide SEP distributions a specific configuration of magnetic field appears to exist at low solar latitudes all the way around the sun, we named this phenomenon a pseudostreamers belt. It appears that the presence of the well developed pseudostreamer or, rather multiple pseudostreamers, organized into the pseudostreamer belt can be considered as a very favorable condition for wide SEP events.

Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.

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Rachel F. Begheyn

2018-06-01

Full Text Available Immature pollen can be induced to switch developmental pathways from gametogenesis to embryogenesis and subsequently regenerate into homozygous, diploid plants. Such androgenic production of doubled haploids is particularly useful for species where inbreeding is hampered by effective self-incompatibility systems. Therefore, increasing the generally low androgenic capacity of perennial ryegrass (Lolium perenne L. germplasm would enable the efficient production of homozygous plant material, so that a more effective exploitation of heterosis through hybrid breeding schemes can be realized. Here, we present the results of a genome-wide association study in a heterozygous, multiparental population of perennial ryegrass (n = 391 segregating for androgenic capacity. Genotyping-by-sequencing was used to interrogate gene- dense genomic regions and revealed over 1,100 polymorphic sites. Between one and 10 quantitative trait loci (QTL were identified for anther response, embryo and total plant production, green and albino plant production and regeneration. Most traits were under polygenic control, although a major QTL on linkage group 5 was associated with green plant regeneration. Distinct genetic factors seem to affect green and albino plant recovery. Two intriguing candidate genes, encoding chromatin binding domains of the developmental phase transition regulator, Polycomb Repressive Complex 2, were identified. Our results shed the first light on the molecular mechanisms behind perennial ryegrass microspore embryogenesis and enable marker-assisted introgression of androgenic capacity into recalcitrant germplasm of this forage crop of global significance.

Wide-band segmented power distribution networks

NARCIS (Netherlands)

Tereshchenko, O.V.; Buesink, Frederik Johannes Karel; Leferink, Frank Bernardus Johannes

2013-01-01

This paper discusses a novel design of Power Distribution Network (PDN). By physical structuring of the power plane into repetitive symmetrical and asymmetrical segments of varying size, suppression of the propagation of unwanted noise throughout the PDN over a wide frequency range is achieved.

Tradeoffs between water requirements and yield stability in annual vs. perennial crops

Science.gov (United States)

Vico, Giulia; Brunsell, Nathaniel A.

2018-02-01

Population growth and changes in climate and diets will likely further increase the pressure on agriculture and water resources globally. Currently, staple crops are obtained from annuals plants. A shift towards perennial crops may enhance many ecosystem services, but at the cost of higher water requirements and lower yields. It is still unclear when the advantages of perennial crops overcome their disadvantages and perennial crops are thus a sustainable solution. Here we combine a probabilistic description of the soil water balance and crop development with an extensive dataset of traits of congeneric annuals and perennials to identify the conditions for which perennial crops are more viable than annual ones with reference to yield, yield stability, and effective use of water. We show that the larger and more developed roots of perennial crops allow a better exploitation of soil water resources and a reduction of yield variability with respect to annual species, but their yields remain lower when considering grain crops. Furthermore, perennial crops have higher and more variable irrigation requirements and lower water productivity. These results are important to understand the potential consequences for yield, its stability, and water resource use of a shift from annual to perennial crops and, more generally, if perennial crops may be more resilient than annual crops in the face of climatic fluctuations.

PERENNIAL HELIANTHUS TAXA IN TÂRGU-MURES CITY AND ITS SURROUNDINGS

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FILEP RITA

2010-12-01

Full Text Available Although in the neighbouring countries several perennial Helianthus taxa have been recorded in the last decade, in Romania only three have been identified so far. The literature and herbaria data of Târgu-Mures date back to the end of the XIXth century, and only refer to H. × multiflorus and H. tuberosus. The aim of this study was to identify the perennial Helianthus taxa in this region and to prepare their current distribution map. The survey was conducted in Târgu Mures city and the neighbouring villages: Livezeni, Sântana de Mures, Sâncraiu de Mures, Sângeorgiu de Mures, and Corunca. Four taxa were identified: H. pauciflorus Nutt., H. × laetiflorus Pers., H. tuberosus L. s.str., and Helianthus tuberosus L. s.l. The first two taxa are cultivated as ornamental plants, H. tuberosus s. str. is cultivated in a few farms, whereas H. tuberosus s. l. is an invasive species that spreads along the rivers.

Seasonal versus perennial immunotherapy: evaluation after three years of treatment.

Science.gov (United States)

Muñoz Lejarazu, D; Bernaola, G; Fernández, E; Audícana, M; Ventas, P; Martín, S; Fernández de Corres, L

1993-01-01

We have performed a comparative study to evaluate seasonal and perennial schedules after 3 years of immunotherapy. Sixty patients suffering from rhinitis and/or asthma due to grass pollen sensitization were randomly allocated to receive a semi-depot extract of Phleum pratense according to a perennial or seasonal schedule. The last year of the study, 14 patients were recruited as a control group without immunotherapy. The cumulative dose was 602 BU in the perennial group and 372 BU in the seasonal group. The frequency and severity of side-effects were similar and very low in both treated groups. The IgE level was significantly lower after perennial immunotherapy at the end of the first 2 years. A seasonal decrease in specific IgG levels was observed in patients who interrupted immunotherapy, while this was not observed in patients under the perennial schedule. Symptoms and medication scores did not show differences between groups. Nevertheless, we found a significant difference between treated patients and the control group.

Genome-wide investigation reveals high evolutionary rates in annual model plants.

Science.gov (United States)

Yue, Jia-Xing; Li, Jinpeng; Wang, Dan; Araki, Hitoshi; Tian, Dacheng; Yang, Sihai

2010-11-09

Rates of molecular evolution vary widely among species. While significant deviations from molecular clock have been found in many taxa, effects of life histories on molecular evolution are not fully understood. In plants, annual/perennial life history traits have long been suspected to influence the evolutionary rates at the molecular level. To date, however, the number of genes investigated on this subject is limited and the conclusions are mixed. To evaluate the possible heterogeneity in evolutionary rates between annual and perennial plants at the genomic level, we investigated 85 nuclear housekeeping genes, 10 non-housekeeping families, and 34 chloroplast genes using the genomic data from model plants including Arabidopsis thaliana and Medicago truncatula for annuals and grape (Vitis vinifera) and popular (Populus trichocarpa) for perennials. According to the cross-comparisons among the four species, 74-82% of the nuclear genes and 71-97% of the chloroplast genes suggested higher rates of molecular evolution in the two annuals than those in the two perennials. The significant heterogeneity in evolutionary rate between annuals and perennials was consistently found both in nonsynonymous sites and synonymous sites. While a linear correlation of evolutionary rates in orthologous genes between species was observed in nonsynonymous sites, the correlation was weak or invisible in synonymous sites. This tendency was clearer in nuclear genes than in chloroplast genes, in which the overall evolutionary rate was small. The slope of the regression line was consistently lower than unity, further confirming the higher evolutionary rate in annuals at the genomic level. The higher evolutionary rate in annuals than in perennials appears to be a universal phenomenon both in nuclear and chloroplast genomes in the four dicot model plants we investigated. Therefore, such heterogeneity in evolutionary rate should result from factors that have genome-wide influence, most likely those

Assessing Water-use Relationships in a Perennial Kernza Field

Science.gov (United States)

De Oliveira, G.; Brunsell, N. A.; Sutherlin, C. E.; Crews, T.; Vico, G.

2017-12-01

Perennial grain/forage crops can sustain high yields without replanting for 3-10 years or more, resulting in potentially important environmental benefits. Although previous research has been conducted in perennial food crops, the coupling between these ecosystems and the atmosphere is not well understood. The objective of this study was to evaluate the magnitude and temporal variability of the water-use relationships in a perennial Kernza wheatgrass crop in Salina, north-central region of Kansas (KS), USA. The study period comprised approximately 4.5 years (May 2012-October 2016) of eddy covariance observations collected at the US-KLS AmeriFlux tower. In particular, we examine the water-use efficiency, carbon and water fluxes in relation to the local environmental factors, such as vapor pressure deficit, soil moisture, air temperature, etc. An analysis of the correspondence between accumulated precipitation (PPT) and ET in the perennial crop indicated a most likely low surface runoff and that there were other sources of water for plant intake in addition to the annual PPT, i.e., deep water. In this sense, we highlight that the long roots observed in perennial crops may facilitate the water uptake in the deeper soil layers, providing extra resources for the plant growth especially when the rainfall indices are low. The results obtained in this work are important in order to better understand the hydrologic cycle of perennial agroecosystems as well as to understand the benefits and disadvantages in relation to annual crops particularly under changing climatic conditions.

Fructan metabolism and changes in fructan composition during cold acclimation in perennial ryegrass

DEFF Research Database (Denmark)

Abeynayake, Shamila; Etzerodt, Thomas; Jonavičienė, Kristina

2015-01-01

. The ecotype ‘Falster’, adapted to cold climates, increased total fructan content and produced more fructans (DP˃7) in the roots than the variety ‘Veyo’, adapted to warmer climates suggesting that accumulation of fructans in roots, especially the high-DP fructans as an adaptive trait for plant recovery after......Perennial ryegrass (Lolium perenne L.) produces high levels of fructans as a mixture of oligomers with different degrees of polymerization (DP). The present study describes the analysis of the compositional changes in the full spectrum of fructan oligomers, fructan distribution between above ground...... biomass (top) and the roots, and the transcription of candidate genes involved in fructan metabolism during cold acclimation in perennial ryegrass variety ‘Veyo’ and ecotype ‘Falster’ from distinct geographical origins. We observed changes in fructan composition and induction of low-DP fructans...

The genome and transcriptome of perennial ryegrass mitochondria

DEFF Research Database (Denmark)

Islam, Md. Shofiqul; Studer, Bruno; Byrne, Stephen

2013-01-01

Background: Perennial ryegrass (Lolium perenne L.) is one of the most important forage and turf grass species of temperate regions worldwide. Its mitochondrial genome is inherited maternally and contains genes that can influence traits of agricultural importance. Moreover, the DNA sequence...... and annotation of the complete mitochondrial genome from perennial ryegrass. Results: Intact mitochondria from perennial ryegrass leaves were isolated and used for mtDNA extraction. The mitochondrial genome was sequenced to a 167-fold coverage using the Roche 454 GS-FLX Titanium platform, and assembled...... of mitochondrial genomes has been established and compared for a large number of species in order to characterize evolutionary relationships.Therefore, it is crucial to understand the organization of the mitochondrial genome and how it varies between and within species. Here, we report the first de novo assembly...

Estimated Perennial Streams of Idaho and Related Geospatial Datasets

Science.gov (United States)

Rea, Alan; Skinner, Kenneth D.

2009-01-01

The perennial or intermittent status of a stream has bearing on many regulatory requirements. Because of changing technologies over time, cartographic representation of perennial/intermittent status of streams on U.S. Geological Survey (USGS) topographic maps is not always accurate and (or) consistent from one map sheet to another. Idaho Administrative Code defines an intermittent stream as one having a 7-day, 2-year low flow (7Q2) less than 0.1 cubic feet per second. To establish consistency with the Idaho Administrative Code, the USGS developed regional regression equations for Idaho streams for several low-flow statistics, including 7Q2. Using these regression equations, the 7Q2 streamflow may be estimated for naturally flowing streams anywhere in Idaho to help determine perennial/intermittent status of streams. Using these equations in conjunction with a Geographic Information System (GIS) technique known as weighted flow accumulation allows for an automated and continuous estimation of 7Q2 streamflow at all points along a stream, which in turn can be used to determine if a stream is intermittent or perennial according to the Idaho Administrative Code operational definition. The selected regression equations were applied to create continuous grids of 7Q2 estimates for the eight low-flow regression regions of Idaho. By applying the 0.1 ft3/s criterion, the perennial streams have been estimated in each low-flow region. Uncertainty in the estimates is shown by identifying a 'transitional' zone, corresponding to flow estimates of 0.1 ft3/s plus and minus one standard error. Considerable additional uncertainty exists in the model of perennial streams presented in this report. The regression models provide overall estimates based on general trends within each regression region. These models do not include local factors such as a large spring or a losing reach that may greatly affect flows at any given point. Site-specific flow data, assuming a sufficient period of

Establishment techniques in under-sown perennial ryegrass for seed production

DEFF Research Database (Denmark)

Deleuran, Lise C; Boelt, Birte

2009-01-01

Establishment methods have proven to be of major importance for grass-seed production. The objective of this research was to test the effect of different sowing techniques on plant establishment and the subsequent seed yield. Perennial ryegrass (Lolium perenne L.) is used as the model grass due...... to its large importance in Danish agriculture. In a three-year trial six different methods of under-sowing of perennial ryegrass in a spring barley cover crop were employed. Perennial ryegrass was either sown directly at different depths within the spring barley (Hordeum vulgare L.) rows or placed 2, 6......, or 12 cm from the spring barley rows. Results of dry-matter yield indicate that the best establishment of the grass occurred when placing the grass 6 or 12 cm from the cover-crop row, and this is of importance in less vigorous grasses. Overall, no seed-yield difference has been observed for perennial...

Native herbaceous perennials as ornamentals

DEFF Research Database (Denmark)

Larsen, Bjarne; Ørgaard, Marian

2013-01-01

Gardening with native perennials is a way to bring nature closer to urban citizens and bring up reflections on nature in a busy world. During three seasons of trialing Salvia pratensis, Dianthus deltoides, Campanula trachelium, Vincetoxicum hirundinaria, Saxifraga granulata, Plantago media and P...

Evaulation of perennial pepperweed (Lepidium latifolium) management in a seasonal wetland in San Francisco Estuary prior to restoration of tidal hydrology

Science.gov (United States)

Herbicide applications have shown potential for control and management of invasive perennial pepperweed (Lepidium latifolium) in rangelands and tidal wetlands. However, reported efficacy of management methods varies widely, and the effects of more recently labeled aquatic herbicides on non-target ve...

Population structure, genetic variation and linkage disequilibrium in perennial ryegrass populations divergently selected for freezing tolerance

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Mallikarjuna Rao eKovi

2015-11-01

Full Text Available Low temperature is one of the abiotic stresses seriously affecting the growth of perennial ryegrass (Lolium perenne L. Understanding the genetic control of freezing tolerance would aid in the development of cultivars of perennial ryegrass with improved adaptation to frost. A total number of 80 individuals (24 of High frost [HF]; 29 of Low frost [LF] and 27 of Unselected [US] from the second generation of the two divergently selected populations and an unselected control population were genotyped using 278 genome-wide SNPs derived from Lolium perenne L. transcriptome sequence. Our studies showed that the HF and LF populations are very divergent after selection for freezing tolerance, whereas the HF and US populations are more similar. Linkage disequilibrium (LD decay varied across the seven chromosomes and the conspicuous pattern of LD between the HF and LF population confirmed their divergence in freezing tolerance. Furthermore, two Fst outlier methods; finite island model (fdist by LOSITAN and hierarchical structure model using ARLEQUIN detected six loci under directional selection. These outlier loci are most probably linked to genes involved in freezing tolerance, cold adaptation and abiotic stress and might be the potential marker resources for breeding perennial ryegrass cultivars with improved freezing tolerance.

Agroecology of Novel Annual and Perennial Crops for Biomass Production

DEFF Research Database (Denmark)

Manevski, Kiril; Jørgensen, Uffe; Lærke, Poul Erik

The agroecological potential of many crops under sustainable intensification has not been investigated. This study investigates such potential for novel annual and perennial crops grown for biomass production.......The agroecological potential of many crops under sustainable intensification has not been investigated. This study investigates such potential for novel annual and perennial crops grown for biomass production....

Control of perennial weeds by mechanical methods and anaerobic soil disinfection

NARCIS (Netherlands)

Huiting, H.F.; Bleeker, P.O.; Riemens, M.M.

2011-01-01

Perennial weeds are difficult to control and ask for a specific approach. During the most recent years it has even become a great challenge to control these weeds in conventional farming systems, although in comparison effective perennial weed control in organic farming systems remains more

Supporting Agricultural Ecosystem Services through the Integration of Perennial Polycultures into Crop Rotations

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Peter Weißhuhn

2017-12-01

Full Text Available This review analyzes the potential role and long-term effects of field perennial polycultures (mixtures in agricultural systems, with the aim of reducing the trade-offs between provisioning and regulating ecosystem services. First, crop rotations are identified as a suitable tool for the assessment of the long-term effects of perennial polycultures on ecosystem services, which are not visible at the single-crop level. Second, the ability of perennial polycultures to support ecosystem services when used in crop rotations is quantified through eight agricultural ecosystem services. Legume–grass mixtures and wildflower mixtures are used as examples of perennial polycultures, and compared with silage maize as a typical crop for biomass production. Perennial polycultures enhance soil fertility, soil protection, climate regulation, pollination, pest and weed control, and landscape aesthetics compared with maize. They also score lower for biomass production compared with maize, which confirms the trade-off between provisioning and regulating ecosystem services. However, the additional positive factors provided by perennial polycultures, such as reduced costs for mineral fertilizer, pesticides, and soil tillage, and a significant preceding crop effect that increases the yields of subsequent crops, should be taken into account. However, a full assessment of agricultural ecosystem services requires a more holistic analysis that is beyond the capabilities of current frameworks.

Bacterial endophytes of perennial crops for management of plant disease

OpenAIRE

Melnick, Rachel L.; Bailey, B.A.; Backman, Paul A.

2013-01-01

Metadata only record Bacterial endophytes, microorganisms which inhabit the internal tissues of plants, can suppress disease and are often used as a biological control in annual crops. Less research, however, has been applied to the use of bacterial endophytes to prevent disease in perennial crops, which presents a more complex challenge. However, exploration of their potential as a biological control in perennial crops has been limited. This chapter assembles current knowledge on the subj...

Cumulative drought and land-use impacts on perennial vegetation across a North American dryland region

Science.gov (United States)

Munson, Seth M.; Long, A. Lexine; Wallace, Cynthia; Webb, Robert H.

2016-01-01

Question The decline and loss of perennial vegetation in dryland ecosystems due to global change pressures can alter ecosystem properties and initiate land degradation processes. We tracked changes of perennial vegetation using remote sensing to address the question of how prolonged drought and land-use intensification have affected perennial vegetation cover across a desert region in the early 21st century? Location Mojave Desert, southeastern California, southern Nevada, southwestern Utah and northwestern Arizona, USA. Methods We coupled the Moderate-Resolution Imaging Spectroradiometer Enhanced Vegetation Index (MODIS-EVI) with ground-based measurements of perennial vegetation cover taken in about 2000 and about 2010. Using the difference between these years, we determined perennial vegetation changes in the early 21st century and related these shifts to climate, soil and landscape properties, and patterns of land use. Results We found a good fit between MODIS-EVI and perennial vegetation cover (2000: R2 = 0.83 and 2010: R2 = 0.74). The southwestern, far southeastern and central Mojave Desert had large declines in perennial vegetation cover in the early 21st century, while the northeastern and southeastern portions of the desert had increases. These changes were explained by 10-yr precipitation anomalies, particularly in the cool season and during extreme dry or wet years. Areas heavily impacted by visitor use or wildfire lost perennial vegetation cover, and vegetation in protected areas increased to a greater degree than in unprotected areas. Conclusions We find that we can extrapolate previously documented declines of perennial plant cover to an entire desert, and demonstrate that prolonged water shortages coupled with land-use intensification create identifiable patterns of vegetation change in dryland regions.

Inter-simple sequence repeat (ISSR) loci mapping in the genome of perennial ryegrass

DEFF Research Database (Denmark)

Pivorienė, O; Pašakinskienė, I; Brazauskas, G

2008-01-01

The aim of this study was to identify and characterize new ISSR markers and their loci in the genome of perennial ryegrass. A subsample of the VrnA F2 mapping family of perennial ryegrass comprising 92 individuals was used to develop a linkage map including inter-simple sequence repeat markers...... demonstrated a 70% similarity to the Hordeum vulgare germin gene GerA. Inter-SSR mapping will provide useful information for gene targeting, quantitative trait loci mapping and marker-assisted selection in perennial ryegrass....

Soil water status under perennial and annual pastures on an acid duplex soil

International Nuclear Information System (INIS)

Heng, L.K.; White, R.E.; Chen, D.

2000-01-01

A comprehensive field study of soil water balance, nitrogen (N) cycling, pasture management and animal production was carried out on an acid duplex soil at Book Book near Wagga Wagga in southern New South Wales. The experiment, carried out over a 3-year period, tested the hypothesis that sown perennial grass pastures improve the sustainability of a grazing system through better use of water and N. The treatments were: annual pastures without lime (AP-), annual pastures with lime (AP+), perennial pastures without lime (PP-) and perennial pastures with lime (PP+). Soil water measurement was made using a neutron probe on one set of the treatments comprising four adjacent paddocks. Over three winter and spring periods, the results showed that perennial grass pastures, especially PP+, consistently extracted about 40 mm more soil water each year than did the annual grass pastures. As a result, surface runoff, sub-surface flow and deep drainage (percolation below 180 cm depth) were about 40 mm less from the perennial pastures. The soil water status of the four pasture treatments was simulated reasonably well using a simple soil water model. Together with the long-term simulation of deep drainage, using past meteorological records, it is shown that proper management of perennial pastures can reduce recharge to groundwater and make pastoral systems more sustainable in the high rainfall zone. However, to completely reduce recharge, more-deeply rooted plants or trees are needed. (author)

Detecting Distributed Network Traffic Anomaly with Network-Wide Correlation Analysis

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Yang Dan

2008-12-01

Full Text Available Distributed network traffic anomaly refers to a traffic abnormal behavior involving many links of a network and caused by the same source (e.g., DDoS attack, worm propagation. The anomaly transiting in a single link might be unnoticeable and hard to detect, while the anomalous aggregation from many links can be prevailing, and does more harm to the networks. Aiming at the similar features of distributed traffic anomaly on many links, this paper proposes a network-wide detection method by performing anomalous correlation analysis of traffic signals' instantaneous parameters. In our method, traffic signals' instantaneous parameters are firstly computed, and their network-wide anomalous space is then extracted via traffic prediction. Finally, an anomaly is detected by a global correlation coefficient of anomalous space. Our evaluation using Abilene traffic traces demonstrates the excellent performance of this approach for distributed traffic anomaly detection.

Evaporite deposition in a shallow perennial lake, Qaidam basin, western China

Energy Technology Data Exchange (ETDEWEB)

Schubel, K.A.; Lowenstein, T.K. (SUNY, Binghampton, NY (United States)); Spencer, R.J. (Univ. of Calgary, Alberta (Canada)); Pengxi, Z. (Institute of Salt Lakes, Xining (China))

1991-03-01

Evaporites accumulate in ephemeral saline-pans, shallow perennial lakes or lagoons, and deep perennial systems. Continuous brine trench exposures of Holocene evaporites from the Qaidam basin provide criteria for the recognition of shallow perennial lake sediments. Based on Landsat photographs, lateral extent of beds (at least 7 km), and sequence thicknesses (maximum 2.5 m), the paleolake is interpreted to have been less than 2.5 m deep and at least 120 km{sup 2} in area. Sediments consist of laminated siliciclastic mud overlain by mud-halite couplets (mm- to cm-scale layers), which represent one vertical shallowing- and concentrating-upwards sequence. The basal laminite marks the onset of deposition in this shallow perennial paleolake. Syndepositional halite textures and fabrics in the overlying mud-halite couplets include cumulates, rafts, and chevrons, draped by mud laminae, and halite layers truncated by horizontal dissolution surfaces (increasing in frequency upwards). Paleolake brines, determined from fluid inclusion melting temperatures, are Na-Mg-Cl-rich and evolve from 0.84 m Mg{sup 2} to 1.52 m Mg{sup 2+} (near the surface). Combinations of the following criteria may be used for the recognition of shallow, nonstratified, perennial lake sediments: lateral continuity of layers; muds undisrupted by subaerial exposure; vertical bottom-growth of halite; halite layers conformably overlain by mud; halite layers truncated by nonuniformly spaced horizontal dissolution surfaces; erosional scours and channels filled with cross-laminated gypsum, halite, and siliciclastic sand and mud; and salinity fluctuations over small stratigraphic intervals within an overall concentrating-upwards sequence.

Horticultural markets promote alien species invasions: an Estonian case study of herbaceous perennials

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Merle Ööpik

2013-06-01

Full Text Available Gardening is a popular pastime, but commercial horticulture is responsible for the introduction of alien species and contributes to invasions in a variety of ways. Although an extensive international literature is available on plant invasions, it is still important at the national level to examine the influence of local factors. Accordingly, 17 nurseries in Estonia that cultivated and sold perennial alien species were selected, and a list of species and prices was compiled. The relationships between species status, and factors such as their abundance in the wild were examined statistically. A qualitative list of the nationally problematic species among herbaceous perennials was also completed. A total of 880 taxa were recorded, of which 10.3% were native and 89.7% alien. In all, 87.3% of the alien species were still confined to cultivated areas. The ecological and socio-economic characteristics of the taxa were described, and lists of the families of casual, naturalised and invasive aliens were provided. Both native and increasing wild alien species have a very similar profile on the market. Alien species that are less expensive, widely available and have more cultivars per species on the market are also more likely to escape. The invasive status and abundance of escaped aliens in an area increases with residence time. In general, socio-economic factors create new and reflect previous propagule pressures from commercial horticulture, which continuously increase the likelihood of alien species surviving and invading new areas. Our findings suggest that these national socio-economic market-related factors explain much of the invasiveness of various perennial ornamental species, and therefore regional and national authorities urgently need to regulate and control the ornamental plant trade to diminish the risk of new invasions.

Perennial wheat lines have highly admixed population structure and elevated rates of outcrossing.

Science.gov (United States)

Perennial wheat has been proposed to alleviate long standing issues with soil erosion in annual cropping systems, while supporting rural communities and providing grain farmers with a marketable climate-resilient crop. The Washington State University perennial wheat breeding program has created sev...

Perennial ryegrass for dairy cows: effects of cultivar on herbage intake during grazing

NARCIS (Netherlands)

Smit, H.J.

2005-01-01

Keywords:Perennial ryegrass, Lolium perenne , sward morphology, sward cutting, n-alkanes, herbage intake, selection, preference.Perennial ryegrass ( Lolium perenne L.) is the most important species for feeding dairy cows. The majority of the farmers in the Netherlands graze their

A Systematic Review of Perennial Staple Crops Literature Using Topic Modeling and Bibliometric Analysis

Science.gov (United States)

2016-01-01

Research on perennial staple crops has increased in the past ten years due to their potential to improve ecosystem services in agricultural systems. However, multiple past breeding efforts as well as research on traditional ratoon systems mean there is already a broad body of literature on perennial crops. In this review, we compare the development of research on perennial staple crops, including wheat, rice, rye, sorghum, and pigeon pea. We utilized the advanced search capabilities of Web of Science, Scopus, ScienceDirect, and Agricola to gather a library of 914 articles published from 1930 to the present. We analyzed the metadata in the entire library and in collections of literature on each crop to understand trends in research and publishing. In addition, we applied topic modeling to the article abstracts, a type of text analysis that identifies frequently co-occurring terms and latent topics. We found: 1.) Research on perennials is increasing overall, but individual crops have each seen periods of heightened interest and research activity; 2.) Specialist journals play an important role in supporting early research efforts. Research often begins within communities of specialists or breeders for the individual crop before transitioning to a more general scientific audience; 3.) Existing perennial agricultural systems and their domesticated crop material, such as ratoon rice systems, can provide a useful foundation for breeding efforts, accelerating the development of truly perennial crops and farming systems; 4.) Primary research is lacking for crops that are produced on a smaller scale globally, such as pigeon pea and sorghum, and on the ecosystem service benefits of perennial agricultural systems. PMID:27213283

The Performance of Early-Generation Perennial Winter Cereals at 21 Sites across Four Continents

Directory of Open Access Journals (Sweden)

Richard C. Hayes

2018-04-01

Full Text Available A network of 21 experiments was established across nine countries on four continents and spanning both hemispheres, to evaluate the relative performance of early generation perennial cereal material derived from wheat, rye, and barley and to inform future breeding strategies. The experimental lines were grown in replicated single rows, and first year production and phenology characteristics as well as yield and persistence for up to three years were monitored. The study showed that the existing experimental material is all relatively short-lived (≤3 years, with environments that are milder in summer and winter generally conferring greater longevity. No pedigree was superior across this diverse network of sites although better performing lines at the higher latitude sites were generally derived from Thinopyrum intermedium. By contrast, at lower latitudes the superior lines were generally derived from Th. ponticum and Th. elongatum parentage. The study observed a poor relationship between year 1 performance and productivity in later years, highlighting the need for perennial cereal material with greater longevity to underpin future experimental evaluation, and the importance for breeding programs to emphasize post-year 1 performance in their selections. Hybrid lines derived from the tetraploid durum wheat generally showed greater longevity than derivatives of hexaploid wheat, highlighting potential for greater use of Triticum turgidum in perennial wheat breeding. We advocate a model in future breeding initiatives that develops perennial cereal genotypes for specific target environments rather than a generic product for one global market. These products may include a diversity of cultivars derived from locally adapted annual and perennial parents. In this scenario the breeding program may have access to only a limited range of adapted perennial grass parents. In other situations, such as at very high latitude environments, perennial crops derived

Direct control of perennial weeds between crops - Implication for organic farming

DEFF Research Database (Denmark)

Melander, Bo; Holst, Niels; Rasmussen, Ilse Ankjær

2012-01-01

and ending the strategy with mouldboard ploughing in the succeeding spring. Grain yields did not differ among the treatments in the two experiments as a result of the generally high effectiveness exerted by the control strategies. Especially post-harvest control strategies based on rotating weed devices...... and mouldboard ploughing appear to be effective solutions against mixed stands of perennials on sandy soils but they do not comply with optimal nutrient management in organic cropping. Therefore, intensive autumn cultivation is only relevant where a perennial weed problem is uncontrollable by other means.......Perennial weeds can be a major constraint to organic crop production and direct control actions applied between crops can then be necessary to reduce the problems. We conducted two experiments, one on a sandy loam and one on a sandy soil in Denmark, with the aim of studying the efficacy...

Energy balance and cost-benefit analysis of biogas production from perennial energy crops pretreated by wet oxidation

DEFF Research Database (Denmark)

Uellendahl, Hinrich; Wang, Guangtao; Møller, Henrik B.

2008-01-01

Perennial crops need far less energy to plant, require less fertilizer and pesticides, and show a lower negative environmental impact compared with annual crops like for example corn. This makes the cultivation of perennial crops as energy crops more sustainable than the use of annual crops....... The conversion into biogas in anaerobic digestion plants shows however much lower specific methane yields for the raw perennial crops like miscanthus and willow due to their lignocellulosic structure. Without pretreatment the net energy gain is therefore lower for the perennials than for corn. When applying wet...... oxidation to the perennial crops, however, the specific methane yield increases significantly and the ratio of energy output to input and of costs to benefit for the whole chain of biomass supply and conversion into biogas becomes higher than for corn. This will make the use of perennial crops as energy...

Wide-area-distributed storage system for a multimedia database

Science.gov (United States)

Ueno, Masahiro; Kinoshita, Shigechika; Kuriki, Makato; Murata, Setsuko; Iwatsu, Shigetaro

1998-12-01

We have developed a wide-area-distribution storage system for multimedia databases, which minimizes the possibility of simultaneous failure of multiple disks in the event of a major disaster. It features a RAID system, whose member disks are spatially distributed over a wide area. Each node has a device, which includes the controller of the RAID and the controller of the member disks controlled by other nodes. The devices in the node are connected to a computer, using fiber optic cables and communicate using fiber-channel technology. Any computer at a node can utilize multiple devices connected by optical fibers as a single 'virtual disk.' The advantage of this system structure is that devices and fiber optic cables are shared by the computers. In this report, we first described our proposed system, and a prototype was used for testing. We then discussed its performance; i.e., how to read and write throughputs are affected by data-access delay, the RAID level, and queuing.

A generic model for estimating biomass accumulation and greenhouse gas emissions from perennial crops

Science.gov (United States)

Ledo, Alicia; Heathcote, Richard; Hastings, Astley; Smith, Pete; Hillier, Jonathan

2017-04-01

Agriculture is essential to maintain humankind but is, at the same time, a substantial emitter of greenhouse gas (GHG) emissions. With a rising global population, the need for agriculture to provide secure food and energy supply is one of the main human challenges. At the same time, it is the only sector which has significant potential for negative emissions through the sequestration of carbon and offsetting via supply of feedstock for energy production. Perennial crops accumulate carbon during their lifetime and enhance organic soil carbon increase via root senescence and decomposition. However, inconsistency in accounting for this stored biomass undermines efforts to assess the benefits of such cropping systems when applied at scale. A consequence of this exclusion is that efforts to manage this important carbon stock are neglected. Detailed information on carbon balance is crucial to identify the main processes responsible for greenhouse gas emissions in order to develop strategic mitigation programs. Perennial crops systems represent 30% in area of total global crop systems, a considerable amount to be ignored. Furthermore, they have a major standing both in the bioenergy and global food industries. In this study, we first present a generic model to calculate the carbon balance and GHGs emissions from perennial crops, covering both food and bioenergy crops. The model is composed of two simple process-based sub-models, to cover perennial grasses and other perennial woody plants. The first is a generic individual based sub-model (IBM) covering crops in which the yield is the fruit and the plant biomass is an unharvested residue. Trees, shrubs and climbers fall into this category. The second model is a generic area based sub-model (ABM) covering perennial grasses, in which the harvested part includes some of the plant parts in which the carbon storage is accounted. Most second generation perennial bioenergy crops fall into this category. Both generic sub

Potential phytoextraction and phytostabilization of perennial peanut on copper-contaminated vineyard soils and copper mining waste.

Science.gov (United States)

Andreazza, Robson; Bortolon, Leandro; Pieniz, Simone; Giacometti, Marcelo; Roehrs, Dione D; Lambais, Mácio R; Camargo, Flávio A O

2011-12-01

This study sought to evaluate the potential of perennial peanut (Arachis pintoi) for copper phytoremediation in vineyard soils (Inceptisol and Mollisol) contaminated with copper and copper mining waste. Our results showed high phytomass production of perennial peanut in both vineyard soils. Macronutrient uptakes were not negatively affected by perennial peanut cultivated in all contaminated soils. Plants cultivated in Mollisol showed high copper concentrations in the roots and shoots of 475 and 52 mg kg(-1), respectively. Perennial peanut plants showed low translocation factor values for Cu, although these plants showed high bioaccumulation factor (BCF) for both vineyard soils, Inceptisol and Mollisol, with BCF values of 3.83 and 3.24, respectively, being characterized as a copper hyperaccumulator plant in these soils. Copper phytoextraction from Inceptisol soil was the highest for both roots and entire plant biomass, with more than 800 mg kg(-1) of copper in whole plant. The highest potential copper phytoextraction by perennial peanut was in Inceptisol soil with copper removal of 2,500 g ha(-1). Also, perennial peanut showed high potential for copper phytoremoval in copper mining waste and Mollisol with 1,700 and 1,500 g of copper per hectare, respectively. In addition, perennial peanuts characterized high potential for phytoextraction and phytostabilization of copper in vineyard soils and copper mining waste.

Matrix population models from 20 studies of perennial plant populations

Science.gov (United States)

Ellis, Martha M.; Williams, Jennifer L.; Lesica, Peter; Bell, Timothy J.; Bierzychudek, Paulette; Bowles, Marlin; Crone, Elizabeth E.; Doak, Daniel F.; Ehrlen, Johan; Ellis-Adam, Albertine; McEachern, Kathryn; Ganesan, Rengaian; Latham, Penelope; Luijten, Sheila; Kaye, Thomas N.; Knight, Tiffany M.; Menges, Eric S.; Morris, William F.; den Nijs, Hans; Oostermeijer, Gerard; Quintana-Ascencio, Pedro F.; Shelly, J. Stephen; Stanley, Amanda; Thorpe, Andrea; Tamara, Ticktin; Valverde, Teresa; Weekley, Carl W.

2012-01-01

Demographic transition matrices are one of the most commonly applied population models for both basic and applied ecological research. The relatively simple framework of these models and simple, easily interpretable summary statistics they produce have prompted the wide use of these models across an exceptionally broad range of taxa. Here, we provide annual transition matrices and observed stage structures/population sizes for 20 perennial plant species which have been the focal species for long-term demographic monitoring. These data were assembled as part of the 'Testing Matrix Models' working group through the National Center for Ecological Analysis and Synthesis (NCEAS). In sum, these data represent 82 populations with >460 total population-years of data. It is our hope that making these data available will help promote and improve our ability to monitor and understand plant population dynamics.

Root Characteristics of Perennial Warm-Season Grasslands Managed for Grazing and Biomass Production

Directory of Open Access Journals (Sweden)

Rattan Lal

2013-07-01

Full Text Available Minirhizotrons were used to study root growth characteristics in recently established fields dominated by perennial C4-grasses that were managed either for cattle grazing or biomass production for bioenergy in Virginia, USA. Measurements over a 13-month period showed that grazing resulted in smaller total root volumes and root diameters. Under biomass management, root volume was 40% higher (49 vs. 35 mm3 and diameters were 20% larger (0.29 vs. 0.24 mm compared to grazing. While total root length did not differ between grazed and biomass treatments, root distribution was shallower under grazed areas, with 50% of total root length in the top 7 cm of soil, compared to 41% in ungrazed exclosures. These changes (i.e., longer roots and greater root volume in the top 10 cm of soil under grazing but the reverse at 17–28 cm soil depths were likely caused by a shift in plant species composition as grazing reduced C4 grass biomass and allowed invasion of annual unsown species. The data suggest that management of perennial C4 grasslands for either grazing or biomass production can affect root growth in different ways and this, in turn, may have implications for the subsequent carbon sequestration potential of these grasslands.

Validation of reference genes for quantitative RT-PCR studies of gene expression in perennial ryegrass (Lolium perenne L.

Directory of Open Access Journals (Sweden)

Thrush Anthony

2010-01-01

Full Text Available Abstract Background Perennial ryegrass (Lolium perenne L. is an important pasture and turf crop. Biotechniques such as gene expression studies are being employed to improve traits in this temperate grass. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR is among the best methods available for determining changes in gene expression. Before analysis of target gene expression, it is essential to select an appropriate normalisation strategy to control for non-specific variation between samples. Reference genes that have stable expression at different biological and physiological states can be effectively used for normalisation; however, their expression stability must be validated before use. Results Existing Serial Analysis of Gene Expression data were queried to identify six moderately expressed genes that had relatively stable gene expression throughout the year. These six candidate reference genes (eukaryotic elongation factor 1 alpha, eEF1A; TAT-binding protein homolog 1, TBP-1; eukaryotic translation initiation factor 4 alpha, eIF4A; YT521-B-like protein family protein, YT521-B; histone 3, H3; ubiquitin-conjugating enzyme, E2 were validated for qRT-PCR normalisation in 442 diverse perennial ryegrass (Lolium perenne L. samples sourced from field- and laboratory-grown plants under a wide range of experimental conditions. Eukaryotic EF1A is encoded by members of a multigene family exhibiting differential expression and necessitated the expression analysis of different eEF1A encoding genes; a highly expressed eEF1A (h, a moderately, but stably expressed eEF1A (s, and combined expression of multigene eEF1A (m. NormFinder identified eEF1A (s and YT521-B as the best combination of two genes for normalisation of gene expression data in perennial ryegrass following different defoliation management in the field. Conclusions This study is unique in the magnitude of samples tested with the inclusion of numerous field-grown samples

Energy-conserving perennial agriculture for marginal land in southern Appalachia. Final technical report

Energy Technology Data Exchange (ETDEWEB)

Williams, G.

1982-01-30

USDA economists predict the end of surplus farm production in the US within this decade. More and more marginal land will be cropped to provide feed for the growing world population and to produce energy. Much of this potential cropland in Southern Appalachia is poorly suited to annual crops, such as corn. Perennial crops are much better suited to steep, rocky, and wet sites. Research was undertaken on the theoretical potentials of perennial species with high predicted yields of protein, carbohydrates, or oils. Several candidate staple perennial crops for marginal land in Southern Appalachia were identified, and estimates were made of their yields, energy input requirements, and general suitabilities. Cropping systems incorporating honeylocust, persimmon, mulberry, jujube, and beech were compared with corn cropping systems. It appears that these candidate staple perennials show distinct advantages for energy conservation and environmental preservation. Detailed economic analyses must await actual demonstration trials, but preliminary indications for ethanol conversion systems with honeylocust are encouraging. It is suggested that short-term loans to farmers undertaking this new type of agriculture would be appropriate to solve cash-flow problems.

The Forecasting of Adaptation Potential of Herbaceous Perennials

Directory of Open Access Journals (Sweden)

Belykh, O. A.

2013-04-01

Full Text Available This work investigates the problem of the ecobiomorph productive features formation of perennial herbs Ranunculaceae family forecasting on the basis of quantitative connections of species parameters with the leading geomorphological factors of South Siberia environment.

Perennial peanut (Arachis glabrata Benth.) contains polyphenol oxidase (PPO) and PPO substrates that can reduce post-harvest proteolysis.

Science.gov (United States)

Sullivan, Michael L; Foster, Jamie L

2013-08-15

Studies of perennial peanut (Arachis glabrata Benth.) suggest its hay and haylage have greater levels of rumen undegraded protein (RUP) than other legume forages such as alfalfa (Medicago sativa L.). Greater RUP can result in more efficient nitrogen utilization by ruminant animals with positive economic and environmental effects. We sought to determine whether, like red clover (Trifolium pretense L.), perennial peanut contains polyphenol oxidase (PPO) and PPO substrates that might be responsible for increased RUP. Perennial peanut extracts contain immunologically detectible PPO protein and high levels of PPO activity (>100 nkatal mg(-1) protein). Addition of caffeic acid (PPO substrate) to perennial peanut extracts depleted of endogenous substrates reduced proteolysis by 90%. Addition of phenolics prepared from perennial peanut leaves to extracts of either transgenic PPO-expressing or control (non-expressing) alfalfa showed peanut phenolics could reduce proteolysis >70% in a PPO-dependent manner. Two abundant likely PPO substrates are present in perennial peanut leaves including caftaric acid. Perennial peanut contains PPO and PPO substrates that together are capable of inhibiting post-harvest proteolysis, suggesting a possible mechanism for increased RUP in this forage. Research related to optimizing the PPO system in other forage crops will likely be applicable to perennial peanut. Published 2013. This article is a U.S. Government work and is in the public domain in the USA.

Distributing Congestion Management System Information Using the World Wide Web

Science.gov (United States)

1997-01-01

The Internet is a unique medium for the distribution of information, and it provides a tremendous opportunity to take advantage of peoples innate interest in transportation issues as they relate to their own lives. In particular, the World Wide Web (...

Floristic analysis of perennial species on flowerbeds in Belgrade with special attention on invasiveness of the recorded species

Directory of Open Access Journals (Sweden)

Popović Marija

2012-01-01

Full Text Available Urban areas are among the most important centres of invasive plant species distribution due to their richness in alien species. Because of that, a detailed floristic analysis of perennial flowerbeds was conducted in the central parks of Belgrade. A total of 53 perennial species were found, of which 55% were the alien species planted on 75% of the research area. Among them, two species (Aster novi belgii and Solidago canadensis are invasive and six species are potentially invasive in Serbia. These are planted on 5% and 20% of the flowerbeds, respectively. We can conclude that both the experts and institutions should be informed about the invasive species and potential damages. In the meantime, planting of native decorative species should be encouraged, since they will not pose a threat to natural habitats. Also, detailed research should be conducted in order to eradicate invasive and potentially invasive species from the surfaces around the research area.

Ionomics: Genes and QTLs controlling heavy metal uptake in perennial grasses grown on phytoxic soil

Science.gov (United States)

Perennial grasses occupy diverse soils throughout the world, including many sites contaminated with heavy metals. Uncovering the genetic architecture of QTLs controlling mineral homoeostasis is critical for understanding the biochemical pathways that determine the elemental profiles of perennial pl...

Transgenic perennial biofuel feedstocks and strategies for bioconfinement

Science.gov (United States)

The use of transgenic tools for the improvement of plant feedstocks will be required to realize the full economic and environmental benefits of cellulosic and other biofuels, particularly from perennial plants. Traits that are targets for improvement of biofuels crops include he...

Genomics-Assisted Exploitation of Heterosis in Perennial Ryegrass (Lolium perenne L.)

DEFF Research Database (Denmark)

Islam, Md. Shofiqul

ryegrass for the development of improved varieties. During his PhD studies, Mohammad Shofiqul Islam studied the feasibility of developing novel hybrid breeding schemes based on cytoplasmic male sterility (CMS) systems in perennial ryegrass. He successfully completed the assembly and annotation of a male......-fertile perennial ryegrass mitochondrial genome, and identified candidate genes responsible for the CMS phenotype by comparing male-fertile and male-sterile mitochondrial genomes. His findings constitute a good basis for continuing research to produce hybrid grass varieties to address the future needs......, breeding activities have been carried out to improve the population and develop synthetic varieties. This does not fully exploit the potential of heterosis, however. Hybrid breeding is an alternative strategy and provides opportunities to fully exploit the genetically available heterosis in perennial...

Local and Widely Distributed EEG Activity in Schizophrenia With Prevalence of Negative Symptoms.

Science.gov (United States)

Grin-Yatsenko, Vera A; Ponomarev, Valery A; Pronina, Marina V; Poliakov, Yury I; Plotnikova, Irina V; Kropotov, Juri D

2017-09-01

We evaluated EEG frequency abnormalities in resting state (eyes closed and eyes open) EEG in a group of chronic schizophrenia patients as compared with healthy subjects. The study included 3 methods of analysis of deviation of EEG characteristics: genuine EEG, current source density (CSD), and group independent component (gIC). All 3 methods have shown that the EEG in schizophrenia patients is characterized by enhanced low-frequency (delta and theta) and high-frequency (beta) activity in comparison with the control group. However, the spatial pattern of differences was dependent on the type of method used. Comparative analysis has shown that increased EEG power in schizophrenia patients apparently concerns both widely spatially distributed components and local components of signal. Furthermore, the observed differences in the delta and theta range can be described mainly by the local components, and those in the beta range mostly by spatially widely distributed ones. The possible nature of the widely distributed activity is discussed.

SEASONALITY OF ANNUAL PLANT ESTABLISHMENT INFLUENCES THE INTERACTIONBETWEEN THE NON-NATIVE ANNUAL GRASS BROMUS MADRITENSIS SSP. RUBENS AND MOJAVE DESERT PERENNIALS

Energy Technology Data Exchange (ETDEWEB)

L A. DEFALCO; G. C. FERNANDEZ; R. S. NOWAK

2004-01-01

Competition between native and non-native species can change the composition and structure of plant communities, but in deserts the timing of non-native plant establishment can modulate their impacts to native species. In a field experiment, we varied densities of the non-native annual grass Bromus madritensis ssp. rubens around individuals of three native perennials--Larrea iridentata, Achnatherum hymenoides, and Pleuraphis rigida--in either winter or spring. Additional plots were prepared for the Same perennial species and seasons, but with a mixture of native annual species. Relative growth rates of perennial shoots (RGRs) declined with increasing Bromus biomass when Bromus that was established in winter had 2-3 mo of growth and high water use before perennial growth began. However, this high water use did not significantly reduce water potentials for the perennials, suggesting Bromus that established earlier depleted other soil resources, such as N, otherwise used by perennial plants. Spring-established Bromus had low biomass even at higher densities and did not effectively reduce RGRs, resulting in an overall lower impact to perennials than when Bromus was established in winter. Similarly, growth and reproduction of perennials with mixed annuals as neighbors did not differ from those with Bromus neighbors of equivalent biomass, but densities of these annuals did not support the high biomass necessary to reduce perennial growth. Thus, impacts of native Mojave Desert annuals to perennials are expected to be lower than those of Bromus because seed dormancy and narrow requirements for seedling survivorship produce densities and biomass lower than those achieved by Bromus. In comparing the effects of Bromus among perennial species, the impact of increased Bromus biomass on RGR was lower for Larrea than for the two perennial grasses, probably because Lurrea maintains low growth rates throughout the year, even after Bromus has completed its life cycle. This contrasts

Root growth of perennials in vertical growing media for use in green walls

DEFF Research Database (Denmark)

Jørgensen, Lars; Dresbøll, Dorte Bodin; Thorup-Kristensen, Kristian

2014-01-01

The vertical orientation of green walls causes a risk of uneven water distribution within the growing medium, and thereby stress on the plant roots. Therefore it was studied how the root and top growth of different species were affected by the water holding characteristics of the growing media....... Five species of hardy perennials (Campanula poscharskyana ‘Stella’, Fragaria vesca ‘Småland’, Geranium sanguineum ‘Max Frei’, Sesleria heufleriana and Veronica officinalis ‘Allgrün’) were grown in 3 types of growing media (coir and 2 of rockwool) in vertical boxes under greenhouse conditions. Root...... distribution was registered over 52 days and the activity of individual root systems was studied via 15N uptake and plant parameters were measured. The water holding characteristics of the growing media was determined on a sandbox. From day 21 and throughout the experiment, the plants growing in the coir...

Allium hookeri , Thw. Enum. A lesser known terrestrial perennial ...

African Journals Online (AJOL)

A lesser known terrestrial perennial herb used as food and its ethnobotanical ... from the wilderness, for consumption and traditional healing of various ailments. ... plants, the lifestyles of the people are changed and they prefer 'junk foods'.

White grubs (Cyclocephala flavipennis damaging perennial winter pastures in the South Region of Brazil

Directory of Open Access Journals (Sweden)

Paulo Gonçalves Duchini

Full Text Available ABSTRACT: Cyclocephala flavipennis Arrow, 1914 (Coleoptera: Melolonthidae, popularly known as white grub, is an insect widely disseminated in the South Region of Brazil. Despite the frequent occurrence of this white grub in areas cultivated with winter cereals, it is generally not considered a pest, since it feeds on straw and dead plant material. However, in 2015 and 2016, this insect has been identified as the damage-causing agent in the perennial winter pastures in Lages, Santa Catarina, Brazil. Damage was observed in patches and caused reduction in root depth and mass, resulting in loss of vigor, accelerated senescence in aerial parts, and death of tillers in Festuca arundinacea Schreb. and Dactylis glomerata L. plants.

Perennial Environment Observatory

International Nuclear Information System (INIS)

Plas, Frederic

2014-07-01

The Perennial Environment Observatory [Observatoire Perenne de l'Environnement - OPE] is a unique approach and infrastructure developed and implemented by ANDRA, the French National Radioactive Waste Management Agency, as part of its overall project of deep geological disposal for radioactive waste. Its current mission is to assess the initial state of the rural (forest, pasture, open-field and aquatic) environment, prior to repository construction. This will be followed in 2017 (pending construction authorizations) and for a period exceeding a century, by monitoring of any impact the repository may have on the environment. In addition to serving its own industrial purpose of environmental monitoring, ANDRA also opens the OPE approach, infrastructure and acquired knowledge (database...) to the scientific community to support further research on long term evolution of the environment subjected to natural and anthropogenic stresses, and to contribute to a better understanding of the interaction between the various compartments of the environment

Fructan metabolism and changes in fructan composition during cold acclimation in perennial ryegrass

Science.gov (United States)

Abeynayake, Shamila W.; Etzerodt, Thomas P.; Jonavičienė, Kristina; Byrne, Stephen; Asp, Torben; Boelt, Birte

2015-01-01

Perennial ryegrass (Lolium perenne L.) produces high levels of fructans as a mixture of oligosaccharides and polysaccharides with different degrees of polymerization (DP). The present study describes the analysis of the compositional changes in the full spectrum of fructans, fructan distribution between above ground biomass (top) and the roots, and the transcription of candidate genes involved in fructan metabolism during cold acclimation in perennial ryegrass variety “Veyo” and ecotype “Falster” from distinct geographical origins. We observed changes in fructan composition and induction of low-DP fructans, especially DP = 4, in both the top and the roots of “Veyo” and “Falster” in response to low-temperature stress. The accumulation of DP > 50 fructans was only apparent in the top tissues where the Lp1-FFT expression is higher compared to the roots in both “Veyo” and “Falster.” Our results also show the accumulation and depolymerization of fructans with different DP, together with the induction of genes encoding fructosyltransferases and fructan exohydrolases in both “Veyo” and “Falster” during cold acclimation, supporting the hypothesis that fructan synthesis and depolymerization occurring simultaneously. The ecotype “Falster,” adapted to cold climates, increased total fructan content and produced more DP > 7 fructans in the roots than the variety “Veyo,” adapted to warmer climates. This indicates that high-DP fructan accumulation in roots may be an adaptive trait for plant recovery after abiotic stresses. PMID:26029229

Introducing perennial biomass crops into agricultural landscapes to address water quality challenges and provide other environmental services: Integrating perennial bioenergy crops into agricultural landscapes

Energy Technology Data Exchange (ETDEWEB)

Cacho, J. F. [Environmental Science Division, Argonne National Laboratory, Lemont IL USA; Negri, M. C. [Environmental Science Division, Argonne National Laboratory, Lemont IL USA; Zumpf, C. R. [Environmental Science Division, Argonne National Laboratory, Lemont IL USA; Campbell, P. [Environmental Science Division, Argonne National Laboratory, Lemont IL USA

2017-11-29

The world is faced with a difficult multiple challenge of meeting nutritional, energy, and other basic needs, under a limited land and water budget, of between 9 and 10 billion people in the next three decades, mitigating impacts of climate change, and making agricultural production resilient. More productivity is expected from agricultural lands, but intensification of production could further impact the integrity of our finite surface water and groundwater resources. Integrating perennial bioenergy crops in agricultural lands could provide biomass for biofuel and potential improvements on the sustainability of commodity crop production. This article provides an overview of ways in which research has shown that perennial bioenergy grasses and short rotation woody crops can be incorporated into agricultural production systems with reduced indirect land use change, while increasing water quality benefits. Current challenges and opportunities as well as future directions are also highlighted.

Genetic and Environmental Variance Among F2 Families in a Commercial Breeding Program for Perennial Ryegrass (Lolium perenne L.)

DEFF Research Database (Denmark)

Fé, Dario; Greve-Pedersen, Morten; Jensen, Christian Sig

2013-01-01

In the joint project “FORAGESELECT”, we aim to implement Genome Wide Selection (GWS) in breeding of perennial ryegrass (Lolium perenne L.), in order to increase genetic response in important agronomic traits such as yield, seed production, stress tolerance and disease resistance, while decreasing...... of this study was to estimate the genetic and environmental variance in the training set composed of F2 families selected from a ten year breeding period. Variance components were estimated on 1193 of those families, sown in 2001, 2003 and 2005 in five locations around Europe. Families were tested together...

Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.

Science.gov (United States)

Boueiz, Adel; Lutz, Sharon M; Cho, Michael H; Hersh, Craig P; Bowler, Russell P; Washko, George R; Halper-Stromberg, Eitan; Bakke, Per; Gulsvik, Amund; Laird, Nan M; Beaty, Terri H; Coxson, Harvey O; Crapo, James D; Silverman, Edwin K; Castaldi, Peter J; DeMeo, Dawn L

2017-03-15

Emphysema has considerable variability in the severity and distribution of parenchymal destruction throughout the lungs. Upper lobe-predominant emphysema has emerged as an important predictor of response to lung volume reduction surgery. Yet, aside from alpha-1 antitrypsin deficiency, the genetic determinants of emphysema distribution remain largely unknown. To identify the genetic influences of emphysema distribution in non-alpha-1 antitrypsin-deficient smokers. A total of 11,532 subjects with complete genotype and computed tomography densitometry data in the COPDGene (Genetic Epidemiology of Chronic Obstructive Pulmonary Disease [COPD]; non-Hispanic white and African American), ECLIPSE (Evaluation of COPD Longitudinally to Identify Predictive Surrogate Endpoints), and GenKOLS (Genetics of Chronic Obstructive Lung Disease) studies were analyzed. Two computed tomography scan emphysema distribution measures (difference between upper-third and lower-third emphysema; ratio of upper-third to lower-third emphysema) were tested for genetic associations in all study subjects. Separate analyses in each study population were followed by a fixed effect metaanalysis. Single-nucleotide polymorphism-, gene-, and pathway-based approaches were used. In silico functional evaluation was also performed. We identified five loci associated with emphysema distribution at genome-wide significance. These loci included two previously reported associations with COPD susceptibility (4q31 near HHIP and 15q25 near CHRNA5) and three new associations near SOWAHB, TRAPPC9, and KIAA1462. Gene set analysis and in silico functional evaluation revealed pathways and cell types that may potentially contribute to the pathogenesis of emphysema distribution. This multicohort genome-wide association study identified new genomic loci associated with differential emphysematous destruction throughout the lungs. These findings may point to new biologic pathways on which to expand diagnostic and therapeutic

A comparative study of AMF diversity in annual and perennial plant species from semiarid gypsum soils.

Science.gov (United States)

Alguacil, M. M.; Torrecillas, E.; Roldán, A.; Díaz, G.; Torres, P.

2012-04-01

The arbuscular mycorrhizal fungi (AMF) communities composition regulate plant interactions and determine the structure of plant communities. In this study we analysed the diversity of AMF in the roots of two perennial gypsophyte plant species, Herniaria fruticosa and Senecio auricula, and an annual herbaceous species, Bromus rubens, growing in a gypsum soil from a semiarid area. The objective was to determine whether perennial and annual host plants support different AMF communities in their roots and whether there are AMF species that might be indicators of specific functional plant roles in these ecosystems. The roots were analysed by nested PCR, cloning, sequencing of the ribosomal DNA small subunit region and phylogenetic analysis. Twenty AMF sequence types, belonging to the Glomus group A, Glomus group B, Diversisporaceae, Acaulosporaceae, Archaeosporaceae and Paraglomeraceae, were identified. Both gypsophyte perennial species had differing compositions of the AMF community and higher diversity when compared with the annual species, showing preferential selection by specific AMF sequences types. B. rubens did not show host specificity, sharing the full composition of its AMF community with both perennial plant species. Seasonal variations in the competitiveness of AM fungi could explain the observed differences in AMF community composition, but this is still a working hypothesis that requires the analysis of further data obtained from a higher number of both annual and perennial plant species in order to be fully tested.

De novo assembly of the perennial ryegrass transcriptome using an RNA-Seq strategy.

Directory of Open Access Journals (Sweden)

Jacqueline D Farrell

Full Text Available Perennial ryegrass is a highly heterozygous outbreeding grass species used for turf and forage production. Heterozygosity can affect de-Bruijn graph assembly making de novo transcriptome assembly of species such as perennial ryegrass challenging. Creating a reference transcriptome from a homozygous perennial ryegrass genotype can circumvent the challenge of heterozygosity. The goals of this study were to perform RNA-sequencing on multiple tissues from a highly inbred genotype to develop a reference transcriptome. This was complemented with RNA-sequencing of a highly heterozygous genotype for SNP calling.De novo transcriptome assembly of the inbred genotype created 185,833 transcripts with an average length of 830 base pairs. Within the inbred reference transcriptome 78,560 predicted open reading frames were found of which 24,434 were predicted as complete. Functional annotation found 50,890 transcripts with a BLASTp hit from the Swiss-Prot non-redundant database, 58,941 transcripts with a Pfam protein domain and 1,151 transcripts encoding putative secreted peptides. To evaluate the reference transcriptome we targeted the high-affinity K+ transporter gene family and found multiple orthologs. Using the longest unique open reading frames as the reference sequence, 64,242 single nucleotide polymorphisms were found. One thousand sixty one open reading frames from the inbred genotype contained heterozygous sites, confirming the high degree of homozygosity.Our study has developed an annotated, comprehensive transcriptome reference for perennial ryegrass that can aid in determining genetic variation, expression analysis, genome annotation, and gene mapping.

The occurrence of large branchiopod crustaceans in perennial pans ...

African Journals Online (AJOL)

Pans are isolated, shallow depressions that are endorheic in nature. Because of the natural hydrological functioning of pans, these systems are usually restricted to arid regions and complete desiccation occurs seasonally. In the eastern provinces of South Africa many pans are perennial in nature often remaining inundated ...

Genetic variation, population structure, and linkage disequilibrium in European elite germplasm of perennial ryegrass

DEFF Research Database (Denmark)

Brazauskas, Gintaras; Lenk, Ingo; Pedersen, Morten Greve

2011-01-01

Perennial ryegrass (Lolium perenne L.) is a highly valued temperate climate grass species grown as forage crop and for amenity uses. Due to its outbreeding nature and recent domestication, a high degree of genetic diversity is expected among cultivars. The aim of this study was to assess the extent...... of linkage disequilibrium (LD) within European elite germplasm and to evaluate the appropriate methodology for genetic association mapping in perennial ryegrass. A high level of genetic diversity was observed in a set of 380 perennial ryegrass elite genotypes when genotyped with 40 SSRs and 2 STS markers...... and occurred within 0.4 cM across European varieties, when population structure was taken into consideration. However, an extended LD of up to 6.6 cM was detected within the variety Aberdart. High genetic diversity and rapid LD decay provide means for high resolution association mapping in elite materials...

The Perennial Ryegrass GenomeZipper – Targeted Use of Genome Resources for Comparative Grass Genomics

DEFF Research Database (Denmark)

Pfeiffer, Matthias; Martis, Mihaela; Asp, Torben

2013-01-01

(Lolium perenne) genome on the basis of conserved synteny to barley (Hordeum vulgare) and the model grass genome Brachypodium (Brachypodium distachyon) as well as rice (Oryza sativa) and sorghum (Sorghum bicolor). A transcriptome-based genetic linkage map of perennial ryegrass served as a scaffold......Whole-genome sequences established for model and major crop species constitute a key resource for advanced genomic research. For outbreeding forage and turf grass species like ryegrasses (Lolium spp.), such resources have yet to be developed. Here, we present a model of the perennial ryegrass...... to establish the chromosomal arrangement of syntenic genes from model grass species. This scaffold revealed a high degree of synteny and macrocollinearity and was then utilized to anchor a collection of perennial ryegrass genes in silico to their predicted genome positions. This resulted in the unambiguous...

Genomic prediction in families of perennial ryegrass based on genotyping-by-sequencing

DEFF Research Database (Denmark)

Ashraf, Bilal

In this thesis we investigate the potential for genomic prediction in perennial ryegrass using genotyping-by-sequencing (GBS) data. Association method based on family-based breeding systems was developed, genomic heritabilities, genomic prediction accurancies and effects of some key factors wer...... explored. Results show that low sequencing depth caused underestimation of allele substitution effects in GWAS and overestimation of genomic heritability in prediction studies. Other factors susch as SNP marker density, population structure and size of training population influenced accuracy of genomic...... prediction. Overall, GBS allows for genomic prediction in breeding families of perennial ryegrass and holds good potential to expedite genetic gain and encourage the application of genomic prediction...

Energy balance and cost-benefit analysis of biogas production from perennial energy crops pretreated by wet oxidation

DEFF Research Database (Denmark)

Uellendahl, Hinrich; Wang, Guangtao; Møller, H.B.

2008-01-01

. The conversion into biogas in anaerobic digestion plants shows however much lower specific methane yields for the raw perennial crops like miscanthus and willow due to their lignocellulosic structure. Without pretreatment the net energy gain is therefore lower for the perennials than for corn. When applying wet...

Comparing soil organic carbon dynamics in perennial grasses and shrubs in a saline-alkaline arid region, northwestern China.

Science.gov (United States)

Zhou, Yong; Pei, Zhiqin; Su, Jiaqi; Zhang, Jingli; Zheng, Yuanrun; Ni, Jian; Xiao, Chunwang; Wang, Renzhong

2012-01-01

Although semi-arid and arid regions account for about 40% of terrestrial surface of the Earth and contain approximately 10% of the global soil organic carbon stock, our understanding of soil organic carbon dynamics in these regions is limited. A field experiment was conducted to compare soil organic carbon dynamics between a perennial grass community dominated by Cleistogenes squarrosa and an adjacent shrub community co-dominated by Reaumuria soongorica and Haloxylon ammodendron, two typical plant life forms in arid ecosystems of saline-alkaline arid regions in northwestern China during the growing season 2010. We found that both fine root biomass and necromass in two life forms varied greatly during the growing season. Annual fine root production in the perennial grasses was 45.6% significantly higher than in the shrubs, and fine root turnover rates were 2.52 and 2.17 yr(-1) for the perennial grasses and the shrubs, respectively. Floor mass was significantly higher in the perennial grasses than in the shrubs due to the decomposition rate of leaf litter in the perennial grasses was 61.8% lower than in the shrubs even though no significance was detected in litterfall production. Soil microbial biomass and activity demonstrated a strong seasonal variation with larger values in May and September and minimum values in the dry month of July. Observed higher soil organic carbon stocks in the perennial grasses (1.32 Kg C m(-2)) than in the shrubs (1.12 Kg C m(-2)) might be attributed to both greater inputs of poor quality litter that is relatively resistant to decay and the lower ability of microorganism to decompose these organic matter. Our results suggest that the perennial grasses might accumulate more soil organic carbon with time than the shrubs because of larger amounts of inputs from litter and slower return of carbon through decomposition.

Genome Wide Allele Frequency Fingerprints (GWAFFs) of populations via genotyping by sequencing

DEFF Research Database (Denmark)

Byrne, Stephen; Czaban, Adrian; Studer, Bruno

2013-01-01

-wide scale would be very powerful, examples include the breeding of outbreeding species, varietal protection in outbreeding species, monitoring changes in population allele frequencies. This motivated us to test the potential to use GBS to evaluate allele frequencies within populations. Perennial ryegrass...... these fingerprints can be used to distinguish between plant populations. Even at current costs and throughput, using sequencing to directly evaluate populations on a genome-wide scale is viable. GWAFFs should find many applications, from varietal development in outbreeding species right through to playing a role...... in protecting plant breeders’ rights....

Internal iron biomineralization in Imperata cylindrica, a perennial grass: chemical composition, speciation and plant localization.

Science.gov (United States)

Rodríguez, N; Menéndez, N; Tornero, J; Amils, R; de la Fuente, V

2005-03-01

* The analysis of metal distribution in Imperata cylindrica, a perennial grass isolated from the banks of Tinto River (Iberian Pyritic Belt), an extreme acidic environment with high content in metals, has shown a remarkable accumulation of iron. This property has been used to study iron speciation and its distribution among different tissues and structures of the plant. * Mossbauer (MS) and X-ray diffraction (XRD) were used to determine the iron species, scanning electron microscopy (SEM) to locate iron biominerals among plant tissue structures, and energy-dispersive X-ray microanalysis (EDAX), X-ray fluorescence (TXRF) and inductively coupled plasma emission spectroscopy (ICP-MS) to confirm their elemental composition. * The MS spectral analysis indicated that iron accumulated in this plant mainly as jarosite and ferritin. The presence of jarosite was confirmed by XRD and the distribution of both minerals in structures of different tissues was ascertained by SEM-EDAX analysis. * The convergent results obtained by complementary techniques suggest a complex iron management system in I. cylindrica, probably as a consequence of the environmental conditions of its habitat.

Defoliation effects of perennial grasses – continuing confusion | DL ...

African Journals Online (AJOL)

Although an adequate knowledge of growth patterns and defoliation effects in perennial grasses is a prerequisite for the rational use of veld and pastures for animal production, our knowledge of this subject is far from adequate. The results of various physiological and clipping studies on tropical and sub-tropical grasses are ...

World-wide distribution automation systems

International Nuclear Information System (INIS)

Devaney, T.M.

1994-01-01

A worldwide power distribution automation system is outlined. Distribution automation is defined and the status of utility automation is discussed. Other topics discussed include a distribution management system, substation feeder, and customer functions, potential benefits, automation costs, planning and engineering considerations, automation trends, databases, system operation, computer modeling of system, and distribution management systems

Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiosperms

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Fiz-Palacios Omar

2008-12-01

Full Text Available Abstract Background Differences in plant annual/perennial habit are hypothesized to cause a generation time effect on divergence rates. Previous studies that compared rates of divergence for internal transcribed spacer (ITS1 and ITS2 sequences of nuclear ribosomal DNA (nrDNA in angiosperms have reached contradictory conclusions about whether differences in generation times (or other life history features are associated with divergence rate heterogeneity. We compared annual/perennial ITS divergence rates using published sequence data, employing sampling criteria to control for possible artifacts that might obscure any actual rate variation caused by annual/perennial differences. Results Relative rate tests employing ITS sequences from 16 phylogenetically-independent annual/perennial species pairs rejected rate homogeneity in only a few comparisons, with annuals more frequently exhibiting faster substitution rates. Treating branch length differences categorically (annual faster or perennial faster regardless of magnitude with a sign test often indicated an excess of annuals with faster substitution rates. Annuals showed an approximately 1.6-fold rate acceleration in nucleotide substitution models for ITS. Relative rates of three nuclear loci and two chloroplast regions for the annual Arabidopsis thaliana compared with two closely related Arabidopsis perennials indicated that divergence was faster for the annual. In contrast, A. thaliana ITS divergence rates were sometimes faster and sometimes slower than the perennial. In simulations, divergence rate differences of at least 3.5-fold were required to reject rate constancy in > 80 % of replicates using a nucleotide substitution model observed for the combination of ITS1 and ITS2. Simulations also showed that categorical treatment of branch length differences detected rate heterogeneity > 80% of the time with a 1.5-fold or greater rate difference. Conclusion Although rate homogeneity was not rejected

Soil carbon under perennial pastures; benchmarking the influence of pasture age and management

Science.gov (United States)

Orgill, Susan E.; Spoljaric, Nancy; Kelly, Georgina

2015-07-01

This paper reports baseline soil carbon stocks from a field survey of 19 sites; 8 pairs/triplet in the Monaro region of New South Wales. Site comparisons were selected by the Monaro Farming Systems group to demonstrate the influence of land management on soil carbon, and included: nutrient management, liming, pasture age and cropping history. Soil carbon stocks varied with parent material and with land management. The fertilised (phosphorus) native perennial pasture had a greater stock of soil carbon compared with the unfertilised site; 46.8 vs 40.4 Mg.C.ha to 0.50 m. However, the introduced perennial pasture which had been limed had a lower stock of soil carbon compared with the unlimed site; 62.8 vs 66.7 Mg.C.ha to 0.50 m. There was a greater stock of soil carbon under two of the three younger (35 yr old) pastures. Cropped sites did not have lower soil carbon stocks at all sites; however, this survey was conducted after three years of above average annual rainfall and most sites had been cropped for less than three years. At all sites more than 20% of the total carbon stock to 0.50 m was in the 0.30 to 0.50 m soil layer highlighting the importance of considering this soil layer when investigating the implications of land management on soil carbon. Our baseline data indicates that nutrient management may increase soil carbon under perennial pastures and highlights the importance of perennial pastures for soil carbon sequestration regardless of age.

Changes of biomass in some perennial grass species. | M.C. ...

African Journals Online (AJOL)

Patterns of seasonal herbaceous biomass change in a burned, ungrazed savanna woodland are reported. A standard clipping technique was used and material farmed in the current season was separated from that formed in the previous season for three perennial grass species: Brachiaria nigropedata, Andropogon ...

Drought mitigation in perennial crops by fertilization and adjustments of regional yield models for future climate variability

Science.gov (United States)

Kantola, I. B.; Blanc-Betes, E.; Gomez-Casanovas, N.; Masters, M. D.; Bernacchi, C.; DeLucia, E. H.

2017-12-01

Increased variability and intensity of precipitation in the Midwest agricultural belt due to climate change is a major concern. The success of perennial bioenergy crops in replacing maize for bioethanol production is dependent on sustained yields that exceed maize, and the marketing of perennial crops often emphasizes the resilience of perennial agriculture to climate stressors. Land conversion from maize for bioethanol to Miscanthus x giganteus (miscanthus) increases yields and annual evapotranspiration rates (ET). However, establishment of miscanthus also increases biome water use efficiency (the ratio between net ecosystem productivity after harvest and ET), due to greater belowground biomass in miscanthus than in maize or soybean. In 2012, a widespread drought reduced the yield of 5-year-old miscanthus plots in central Illinois by 36% compared to the previous two years. Eddy covariance data indicated continued soil water deficit during the hydrologically-normal growing season in 2013 and miscanthus yield failed to rebound as expected, lagging behind pre-drought yields by an average of 53% over the next three years. In early 2014, nitrogen fertilizer was applied to half of mature (7-year-old) miscanthus plots in an effort to improve yields. In plots with annual post-emergence application of 60 kg ha-1 of urea, peak biomass was 29% greater than unfertilized miscanthus in 2014, and 113% greater in 2015, achieving statistically similar yields to the pre-drought average. Regional-scale models of perennial crop productivity use 30-year climate averages that are inadequate for predicting long-term effects of short-term extremes on perennial crops. Modeled predictions of perennial crop productivity incorporating repeated extreme weather events, observed crop response, and the use of management practices to mitigate water deficit demonstrate divergent effects on predicted yields.

Population-wide distributions of neural activity during perceptual decision-making

Science.gov (United States)

Machens, Christian

2018-01-01

Cortical activity involves large populations of neurons, even when it is limited to functionally coherent areas. Electrophysiological recordings, on the other hand, involve comparatively small neural ensembles, even when modern-day techniques are used. Here we review results which have started to fill the gap between these two scales of inquiry, by shedding light on the statistical distributions of activity in large populations of cells. We put our main focus on data recorded in awake animals that perform simple decision-making tasks and consider statistical distributions of activity throughout cortex, across sensory, associative, and motor areas. We transversally review the complexity of these distributions, from distributions of firing rates and metrics of spike-train structure, through distributions of tuning to stimuli or actions and of choice signals, and finally the dynamical evolution of neural population activity and the distributions of (pairwise) neural interactions. This approach reveals shared patterns of statistical organization across cortex, including: (i) long-tailed distributions of activity, where quasi-silence seems to be the rule for a majority of neurons; that are barely distinguishable between spontaneous and active states; (ii) distributions of tuning parameters for sensory (and motor) variables, which show an extensive extrapolation and fragmentation of their representations in the periphery; and (iii) population-wide dynamics that reveal rotations of internal representations over time, whose traces can be found both in stimulus-driven and internally generated activity. We discuss how these insights are leading us away from the notion of discrete classes of cells, and are acting as powerful constraints on theories and models of cortical organization and population coding. PMID:23123501

Impulse radio ultra wide-band over multi-mode fiber for in-home signal distribution

DEFF Research Database (Denmark)

Caballero Jambrina, Antonio; Rodes, Roberto; Jensen, Jesper Bevensee

2009-01-01

We propose and experimentally demonstrate a high speed impulse radio ultra wide-band (IR-UWB) wireless link for in-home network signal distribution. The IR-UWB pulse is distributed over a multimode fiber to the transmitter antenna. Wireless transmitted bit-rates of 1 Gbps at 2 m and 2 Gbps at 1.5 m...

Cultivar by environment effects of perennial ryegrass cultivars selected for high water soluble carbohydrates managed under differing precipitation levels

Science.gov (United States)

Historic results of perennial ryegrass (Lolium perenne L.) breeding include improved disease resistance, biomass, and nutritional quality. Yet, lack of tolerance to water stress limits its wise use. Recent efforts to increase water soluble carbohydrate (WSC) content in perennial ryegrass may incre...

Perennial filter strips reduce nitrate levels in soil and shallow groundwater after grassland-to-cropland conversion.

Science.gov (United States)

Zhou, Xiaobo; Helmers, Matthew J; Asbjornsen, Heidi; Kolka, Randy; Tomer, Mark D

2010-01-01

Many croplands planted to perennial grasses under the Conservation Reserve Program are being returned to crop production, and with potential consequences for water quality. The objective of this study was to quantify the impact of grassland-to-cropland conversion on nitrate-nitrogen (NO3-N) concentrations in soil and shallow groundwater and to assess the potential for perennial filter strips (PFS) to mitigate increases in NO3-N levels. The study, conducted at the Neal Smith National Wildlife Refuge (NSNWR) in central Iowa, consisted of a balanced incomplete block design with 12 watersheds and four watershed-scale treatments having different proportions and topographic positions of PFS planted in native prairie grasses: 100% rowcrop, 10% PFS (toeslope position), 10% PFS (distributed on toe and as contour strips), and 20 PFS (distributed on toe and as contour strips). All treatments were established in fall 2006 on watersheds that were under bromegrass (Bromus L.) cover for at least 10 yr. Nonperennial areas were maintained under a no-till 2-yr corn (Zea mays L.)--soybean [Glycine max. (L.) Merr.] rotation since spring 2007. Suction lysimeter and shallow groundwater wells located at upslope and toeslope positions were sampled monthly during the growing season to determine NO3-N concentration from 2005 to 2008. The results indicated significant increases in NO3-N concentration in soil and groundwater following grassland-to-cropland conversion. Nitrate-nitrogen levels in the vadose zone and groundwater under PFS were lower compared with 100% cropland, with the most significant differences occurring at the toeslope position. During the years following conversion, PFS mitigated increases in subsurface nitrate, but long-term monitoring is needed to observe and understand the full response to land-use conversion.

Genetic markers for flowering in perennial ryegrass

DEFF Research Database (Denmark)

Paina, Cristiana; Byrne, Stephen; Andersen, Jeppe Reitan

2011-01-01

Perennial ryegrass (Lolium perenne L.) is the principal forage grass utilized in Danish agriculture and underpins the beef and dairy sectors. It is characterized as having high digestibility, high nutritional value, and high productivity during vegetative growth. However, at the reproductive growth...... genes will be converted to molecular markers and mapped in an existing mapping population previously characterized for flowering time and vernalization response. References: Amasino, R.M., Michaels S.D. (2010). The Timing of Flowering. Plant Physiology 154: 516–520 Greenup, A., W. Peacock, W.J., Dennis...

The effects of perennial ryegrass and alfalfa on microbial abundance and diversity in petroleum contaminated soil

International Nuclear Information System (INIS)

Kirk, Jennifer L.; Klironomos, John N.; Lee, Hung; Trevors, Jack T.

2005-01-01

Enhanced rhizosphere degradation uses plants to stimulate the rhizosphere microbial community to degrade organic contaminants. We measured changes in microbial communities caused by the addition of two species of plants in a soil contaminated with 31,000 ppm of total petroleum hydrocarbons. Perennial ryegrass and/or alfalfa increased the number of rhizosphere bacteria in the hydrocarbon-contaminated soil. These plants also increased the number of bacteria capable of petroleum degradation as estimated by the most probable number (MPN) method. Eco-Biolog plates did not detect changes in metabolic diversity between bulk and rhizosphere samples but denaturing gradient gel electrophoresis (DGGE) analysis of PCR-amplified partial 16S rDNA sequences indicated a shift in the bacterial community in the rhizosphere samples. Dice coefficient matrices derived from DGGE profiles showed similarities between the rhizospheres of alfalfa and perennial ryegrass/alfalfa mixture in the contaminated soil at week seven. Perennial ryegrass and perennial ryegrass/alfalfa mixture caused the greatest change in the rhizosphere bacterial community as determined by DGGE analysis. We concluded that plants altered the microbial population; these changes were plant-specific and could contribute to degradation of petroleum hydrocarbons in contaminated soil. - Plant-specific changes in microbial populations on roots affect degradation of petroleum hydrocarbons in contaminated soil

PERPHECLIM ACCAF Project - Perennial fruit crops and forest phenology evolution facing climatic changes

Science.gov (United States)

Garcia de Cortazar-Atauri, Iñaki; Audergon, Jean Marc; Bertuzzi, Patrick; Anger, Christel; Bonhomme, Marc; Chuine, Isabelle; Davi, Hendrik; Delzon, Sylvain; Duchêne, Eric; Legave, Jean Michel; Raynal, Hélène; Pichot, Christian; Van Leeuwen, Cornelis; Perpheclim Team

2015-04-01

Phenology is a bio-indicator of climate evolutions. Measurements of phenological stages on perennial species provide actually significant illustrations and assessments of the impact of climate change. Phenology is also one of the main key characteristics of the capacity of adaptation of perennial species, generating questions about their consequences on plant growth and development or on fruit quality. Predicting phenology evolution and adaptative capacities of perennial species need to override three main methodological limitations: 1) existing observations and associated databases are scattered and sometimes incomplete, rendering difficult implementation of multi-site study of genotype-environment interaction analyses; 2) there are not common protocols to observe phenological stages; 3) access to generic phenological models platforms is still very limited. In this context, the PERPHECLIM project, which is funded by the Adapting Agriculture and Forestry to Climate Change Meta-Program (ACCAF) from INRA (French National Institute of Agronomic Research), has the objective to develop the necessary infrastructure at INRA level (observatories, information system, modeling tools) to enable partners to study the phenology of various perennial species (grapevine, fruit trees and forest trees). Currently the PERPHECLIM project involves 27 research units in France. The main activities currently developed are: define protocols and observation forms to observe phenology for various species of interest for the project; organizing observation training; develop generic modeling solutions to simulate phenology (Phenological Modelling Platform and modelling platform solutions); support in building research projects at national and international level; develop environment/genotype observation networks for fruit trees species; develop an information system managing data and documentation concerning phenology. Finally, PERPHECLIM project aims to build strong collaborations with public

Next steps in determining the overall sustainability of perennial bioenergy crops

Science.gov (United States)

Perennial bioenergy crops are being developed and evaluated in the United States to partially offset petroleum transport fuels. Accurate accounting of upstream and downstream greenhouse gas (GHG) emissions is necessary to measure the overall carbon intensity of new biofuel feedstocks. For example, c...

Frequency of inhibitors of daphnid trypsin in the widely distributed cyanobacterial genus Planktothrix

DEFF Research Database (Denmark)

Rohrlack, T.; Christoffersen, K.; Friberg-Jensen, U.

2005-01-01

on the frequency of such compounds in the widely distributed cyanobacterial genus Planktothrix. Of the 89 Planktothrix strains analysed, about 70% produced inhibitors of daphnid trypsin. The strains tested positive represented three common Planktothrix species and were isolated from diverse localities...

Rhetorical Transcendence Revisited: The "Thin Red Line" as Perennial Philosophy.

Science.gov (United States)

Stroud, Scott R.

Fifteen years ago, J. H. Rushing published a seminal article addressing the fragmentation within contemporary society and the ways in which myths (films) may address this exigence. The exigence of fragmentation is relieved, according to her analysis, by mediated recourse to the perennial philosophy of monistic holism that is found across the…

Path and correlation analysis of perennial ryegrass (Lolium perenne L.) seed yield components

DEFF Research Database (Denmark)

Abel, Simon; Gislum, René; Boelt, Birte

2017-01-01

Maximum perennial ryegrass seed production potential is substantially greater than harvested yields with harvested yields representing only 20% of calculated potential. Similar to wheat, maize and other agriculturally important crops, seed yield is highly dependent on a number of interacting seed...... yield components. This research was performed to apply and describe path analysis of perennial ryegrass seed yield components in relation to harvested seed yields. Utilising extensive yield components which included subdividing reproductive inflorescences into five size categories, path analysis...... was undertaken assuming a unidirectional causal-admissible relationship between seed yield components and harvested seed yield in six commercial seed production fields. Both spikelets per inflorescence and florets per spikelet had a significant (p seed yield; however, total...

Comparison of signaling interactions determining annual and perennial plant growth in response to low temperature

Directory of Open Access Journals (Sweden)

Astrid eWingler

2015-01-01

Full Text Available Low temperature inhibits plant growth despite the fact that considerable rates of photosynthetic activity can be maintained. Instead of lower rates of photosynthesis, active inhibition of cell division and expansion is primarily responsible for reduced growth. This results in sink limitation and enables plants to accumulate carbohydrates that act as compatible solutes or are stored throughout the winter to enable re-growth in spring. Regulation of growth in response to temperature therefore requires coordination with carbon metabolism, e.g. via the signaling metabolite trehalose-6-phosphate. The phytohormones gibberellins (GA and jasmonate (JA play an important role in regulating growth in response to temperature. Growth restriction at low temperature is mainly mediated by DELLA proteins, whose degradation is promoted by GA. For annual plants, it has been shown that the GA/DELLA pathway interacts with JA signaling and C-repeat binding factor (CBF dependent cold acclimation, but these interactions have not been explored in detail for perennials. Growth regulation in response to seasonal factors is, however, particularly important in perennials, especially at high latitudes. In autumn, growth cessation in trees is caused by shortening of the daylength in interaction with phytohormone signaling. In perennial grasses seasonal differences in the sensitivity to GA may enable enhanced growth in spring. This review provides an overview of the signaling interactions that determine plant growth at low temperature and highlights gaps in our knowledge, especially concerning the seasonality of signaling responses in perennial plants.

Energizing marginal soils: A perennial cropping system for Sida hermaphrodita

Science.gov (United States)

Nabel, Moritz; Poorter, Hendrik; Temperton, Vicky; Schrey, Silvia D.; Koller, Robert; Schurr, Ulrich; Jablonowski, Nicolai D.

2017-04-01

As a way to avoid land use conflicts, the use of marginal soils for the production of plant biomass can be a sustainable alternative to conventional biomass production (e.g. maize). However, new cropping strategies have to be found that meet the challenge of crop production under marginal soil conditions. We aim for increased soil fertility by the use of the perennial crop Sida hermaphrodita in combination with organic fertilization and legume intercropping to produce substantial biomass yield. We present results of a three-year outdoor mesocosm experiment testing the perennial energy crop Sida hermaphrodita grown on a marginal model substrate (sand) with four kinds of fertilization (Digestate broadcast, Digestate Depot, mineral NPK and unfertilized control) in combination with legume intercropping. After three years, organic fertilization (via biogas digestate) compared to mineral fertilization (NPK), reduced the nitrate concentration in leachate and increased the soil carbon content. Biomass yields of Sida were 25% higher when fertilized organically, compared to mineral fertilizer. In general, digestate broadcast application reduced root growth and the wettability of the sandy substrate. However, when digestate was applied locally as depot to the rhizosphere, root growth increased and the wettability of the sandy substrate was preserved. Depot fertilization increased biomass yield by 10% compared to digestate broadcast fertilization. We intercropped Sida with various legumes (Trifolium repens, Trifolium pratense, Melilotus spp. and Medicago sativa) to enable biological nitrogen fixation and make the cropping system independent from synthetically produced fertilizers. We could show that Medicago sativa grown on marginal substrate fixed large amounts of N, especially when fertilized organically, whereas mineral fertilization suppressed biological nitrogen fixation. We conclude that the perennial energy crop Sida in combination with organic fertilization has great

Bidirectional recovery patterns of Mojave Desert vegetation in an aqueduct pipeline corridor after 36 years: I. Perennial shrubs and grasses

Science.gov (United States)

Berry, Kristin H.; Weigand, James F.; Gowan, Timothy A.; Mack, Jeremy S.

2015-01-01

We studied recovery of 21 perennial plant species along a severely disturbed aqueduct corridor in a Larrea tridentata-Ambrosia dumosa plant alliance in the Mojave Desert 36 years after construction. The 97-m wide corridor contained a central dirt road and buried aqueduct pipeline. We established transects at 0 m (road verge), 20 m and 40 m into the disturbance corridor, and at 100 m in undisturbed habitat (the control). Although total numbers of shrubs per transect did not vary significantly with distance from the verge, canopy cover of shrubs, species richness, and species diversity were higher in the control than at the verge and other distances. Canopy cover of common shrubs (Ericameria nauseosa, Ambrosia salsola, A. dumosa, L. tridentata, Grayia spinosa) and perennial grasses (Elymus elymoides, Poa secunda) also varied significantly by location. Discriminant analysis clearly separated the four distances based on plant composition. Patterns of recovery were bidirectional: secondary succession from the control into the disturbance corridor and inhibition from the verge in the direction of the control. Time estimated for species composition to resemble the control is dependent on location within the disturbance corridor and could be centuries at the road verge. Our findings have applications to other deserts.

Perennial ryegrass for dairy cows: Intake, milk production and nitrogen utilization

NARCIS (Netherlands)

Tas, B.M.

2005-01-01

Keywords: perennial ryegrass, dairy cows, intake, digestibility milk production, nitrogen utilisation.In the Netherlands, grass is one of the main roughages in the diet of high productive dairy cows. Grass is associated with two main problems: the limited dry matter intake (DMI)

The mechanical behavior of metal alloys with grain size distribution in a wide range of strain rates

Science.gov (United States)

Skripnyak, V. A.; Skripnyak, V. V.; Skripnyak, E. G.

2017-12-01

The paper discusses a multiscale simulation approach for the construction of grain structure of metals and alloys, providing high tensile strength with ductility. This work compares the mechanical behavior of light alloys and the influence of the grain size distribution in a wide range of strain rates. The influence of the grain size distribution on the inelastic deformation and fracture of aluminium and magnesium alloys is investigated by computer simulations in a wide range of strain rates. It is shown that the yield stress depends on the logarithm of the normalized strain rate for light alloys with a bimodal grain distribution and coarse-grained structure.

Energy from biomass: Results of two-years trials on annual and perennial Herba ceous species

International Nuclear Information System (INIS)

Angelini, L.; Ceccarini, L.; Oggiano, N.; Bonari, E.

1994-01-01

In the framework of the PRisCa Project (Alternative Crops Research Project) a number of germ plasm collections were set up at the Department of Agronomy of the University of Pisa in order to identify annual and perennial herbaceous species utilizable for electric energy production. The first results deriving from trials carried out in 1992-93 are reported. The following species were used: 1) Annual: Sorghum bicolor, Hibiscus cannabinus, Pennisetum americanum, Kochia scoparia. 2) Perennial: Cynara cardunculus, Helianthus tuberosus, Miscantus sinensis, Arundo donax. Almost all species tested were represented by several genotypes. The total amount of species and genotype tested was 16. On all species, main phenological, biometric and productive determinations were performed. The hypothesized final use was intended to be electric power production by direct combustion and/or gasification. In addition, specific calorific value was also determined by adiabatic calorimeter as well as chemical composition of dry matter and ash composition. Species showing high yield potential, both from the quantitative and qualitative point of view, were Sorghum bicolor and Kochia scoparia (among annuals), as well as Miscanthus sinensis and Arundo donax (among perennials). Total dry matter yield ranged from about 23 tha -1 in the annual species to about 56 tha -1 in the perennials. The highest total calorific power obtainable from dry epigeic biomass was measured in Sorghum bicolor and Arundo donax - 4023 Kcal Kg -1 and 4166 Kcal Kg -1 respectively. The preliminary results suggest that vegetable biomass is environmentally-friendly and could contribute significantly to the world energy needs. (author)

Nitrous oxide emission and soil carbon sequestration from herbaceous perennial biofuel feedstocks

Science.gov (United States)

Greenhouse gas (GHG) mitigation and renewable, domestic fuels are needed in the United States. Switchgrass (Panicum virgatum L.) and big bluestem (Andropogon gerdardii Vitman) are potential bioenergy feedstocks that may meet this need. However, managing perennial grasses for feedstock requires nitro...

TrMADS3, a new MADS-box gene, from a perennial species Taihangia rupestris (Rosaceae) is upregulated by cold and experiences seasonal fluctuation in expression level.

Science.gov (United States)

Du, Xiaoqiu; Xiao, Qiying; Zhao, Ran; Wu, Feng; Xu, Qijiang; Chong, Kang; Meng, Zheng

2008-06-01

In many temperate perennial plants, floral transition is initiated in the first growth season but the development of flower is arrested during the winter to ensure production of mature flowers in the next spring. The molecular mechanisms of the process remain poorly understood with few well-characterized regulatory genes. Here, a MADS-box gene, named as TrMADS3, was isolated from the overwintering inflorescences of Taihangia rupestris, a temperate perennial in the rose family. Phylogenetic analysis reveals that TrMADS3 is more closely related to the homologs of the FLOWERING LOCUS C lineage than to any of the other MIKC-type MADS-box lineages known from Arabidopsis. The TrMADS3 transcripts are extensively distributed in inflorescences, roots, and leaves during the winter. In controlled conditions, the TrMADS3 expression level is upregulated by a chilling exposure for 1 to 2 weeks and remains high for a longer period of time in warm conditions after cold treatment. In situ hybridization reveals that TrMADS3 is predominantly expressed in the vegetative and reproductive meristems. Ectopic expression of TrMADS3 in Arabidopsis promotes seed germination on the media containing relatively high NaCl or mannitol concentrations. These data indicate that TrMADS3 in a perennial species might have its role in both vegetative and reproductive meristems in response to cold.

BETA DIVERSITY AND COMMUNITY DIFFERENTIATION IN DRY PERENNIAL SAND GRASSLANDS

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E. KOVACS-LANG

2011-01-01

Full Text Available The spatial variability of species composition was studied in perennial sand grasslands in Hungary at multiple scales. Three sites were compared along an aridity gradient. Existing differences in climate along this ca. 200 km gradient correspond to regional climate changes predicted for the next 20-30 years. Six stands of Festucetum vaginatae grasslands were selected at each site within 400 x 1200 m areas for representing the coarse-scale within-site heterogeneity. Fine-scale compositional heterogeneity of vegetation within stands was sampled by recording the presence of species along 52 m long circular belt transects of 1040 units of 5 cm x 5 cm contiguous microquadrats. This sampling design enabled us to study the patterns of species combinations at a wide range of scales. The highest variability of plant species combinations appeared at very fine scales, between 10 cm and 25 cm. Differences in beta diversity along the gradient were scale-dependent. We found a decreasing trend of beta diversity with increasing aridity at fine scale, and on the contrary, an increasing trend at landscape scale. We conclude that the major trend of the vegetation differentiation due to aridity is the decrease of compositional variability at fine-scale accompanied by a coarse-scale diversification.

Cultivar effects of perennial ryegrass on herbage intake by grazing dairy cows

NARCIS (Netherlands)

Smit, H.J.

2006-01-01

Perennial ryegrass is the most abundant grass species in temperate climates. An increased herbage intake of dairy cows by breeding new cultivars could have a large potential impact on agriculture. The effects of cultivars on sward structure, nutritive value, physical characteristics and disease

The transfer of radionuclides from contaminated groundwater into perennial ryegrass and winter wheat

International Nuclear Information System (INIS)

Wadey, P.; Shaw, G.; Butler, A. P.; Tompkins, J. A.; Wheater, H. S.

1996-01-01

Lysimeter studies of the migration of radionuclides from a contaminated water table and their subsequent uptake by plant roots have been undertaken using two distinct soil types and varying crop regimes. An eight year multi-disciplinary research project (funded by Nirex) has concentrated on the upward migration of contaminants from near-surface water tables, and their uptake by winter wheat and perennial ryegrass crops. Experimental data are presented for the movement and uptake of radiocaesium 137 Cs. These data show significant movement in the unsaturated zone during the first year of dosing, followed by progressively reduced availability in subsequent years. A suite of physically based hydrological and solute transport models has been developed to model radionuclide transport in the unsaturated zone. Model simulations, based on a conventional advection-dispersion representation incorporating linear sorption processes, were unable to describe adequately the distribution of radiocaesium within the soil profile. However, the introduction of root storage and translocation processes provided significantly improved results. (author)

Anaerobic co-digestion of perennials: Methane potential and digestate nitrogen fertilizer value

DEFF Research Database (Denmark)

Muller-Stover, Dorette Sophie; Sun, Guotao; Kroff, Pablo

2016-01-01

Co-digestion of crop biomass improves the traditional manure-based biogas yield due to an increased content of easily degradable carbon compounds. In this study, the methane potential of three perennials (grass, legumes, and grass+legume) was determined using various amounts together with animal ...

Impacts of managing perennial grasses in the northern Midwest United States for bioenergy on soil organic C and nitrous oxide emission

Science.gov (United States)

In the USA perennial grasses [e.g., switchgrass (Panicum virgatum L.) and big bluestem (Andropogon gerdardii Vitman)] are proposed as cellulosic feedstock. Perennial grasses are often touted as being low input and as having a C-neutral foot print, but managing them as bioenergy feedstock means addin...

Selecting native perennial plants for ecological intensification in Mediterranean greenhouse horticulture.

Science.gov (United States)

Rodríguez, E; González, M; Paredes, D; Campos, M; Benítez, E

2017-12-04

Natural control by predators and parasitoids provides an important and often unnoticed ecosystem service to agricultural landscapes by reducing pest populations in crops. The current model of horticultural intensification in south-eastern Spain produces high yields but has also resulted in a landscape almost completely covered by plastic. Promoting natural areas among greenhouses could enhance biodiversity, by being beneficial insects, and reduce pest pressure outdoors. The first step is to ascertain how pests and their natural enemies (NEs) use Mediterranean vegetation for selecting the best plants for pest suppression outdoors. The abundance of the two major horticultural pests, the tobacco whitefly, Bemisia tabaci, and the western flower thrips, Frankliniella occidentalis, together with their NEs, were assayed in 22 flowering perennial plants, which were newly planted in an experimental field surrounded by greenhouses. Eight plant species were identified as the most critical species for sustaining pest populations outdoors. A set of five plant species supported a medium level of pests, and another set of ten plant species supported the lowest level of both pests. Tobacco whitefly occurred in a few plants species, whereas western flower thrips occurred on almost all the plant species studied, and was favoured by the presence of flowers in perennial plants. The results suggest that plant diversity may provide relatively few acceptable host plants for tobacco whitefly than for western flower thrips. NEs were generally collected in plants that also supported abundance of pests, indicating that host/prey availability, more than food resources from flowers, was a stronger predictor of NE abundance in perennial plants. Field trials using the plants with the lowest host acceptance by pests are needed in order to ascertain whether pest abundance outdoors is reduced.

Association of Candidate Genes With Submergence Response in Perennial Ryegrass

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Xicheng Wang

2017-05-01

Full Text Available Perennial ryegrass is a popular cool-season grass species due to its high quality for forage and turf. The objective of this study was to identify associations of candidate genes with growth and physiological traits to submergence stress and recovery after de-submergence in a global collection of 94 perennial ryegrass accessions. Accessions varied largely in leaf color, plant height (HT, leaf fresh weight (LFW, leaf dry weight (LDW, and chlorophyll fluorescence (Fv/Fm at 7 days of submergence and in HT, LFW and LDW at 7 days of recovery in two experiments. Among 26 candidate genes tested by various models, single nucleotide polymorphisms (SNPs in 10 genes showed significant associations with traits including 16 associations for control, 10 for submergence, and 8 for recovery. Under submergence, Lp1-SST encoding sucrose:sucrose 1-fructosyltransferase and LpGA20ox encoding gibberellin 20-oxidase were associated with LFW and LDW, and LpACO1 encoding 1-aminocyclopropane-1-carboxylic acid oxidase was associated with LFW. Associations between Lp1-SST and HT, Lp6G-FFT encoding fructan:fructan 6G-fructosyltransferase and Fv/Fm, LpCAT encoding catalase and HT were also detected under submergence stress. Upon de-submergence, Lp1-SST, Lp6G-FFT, and LpPIP1 encoding plasma membrane intrinsic protein type 1 were associated with LFW or LDW, while LpCBF1b encoding C-repeat binding factor were associated with HT. Nine significant SNPs in Lp1-SST, Lp6G-FFT, LpCAT, and LpACO1 resulted in amino acid changes with five substitutions found in Lp1-SST under submergence or recovery. The results indicated that allelic diversity in genes involved in carbohydrate and antioxidant metabolism, ethylene and gibberellin biosynthesis, and transcript factor could contribute to growth variations in perennial ryegrass under submergence stress and recovery after de-submergence.

Perennial soybean seeds coated with high doses of boron and zinc ...

African Journals Online (AJOL)

The objective of this work was to study combinations of high doses of boron (B) and zinc (Zn) in the recoating of perennial soybean seeds, in order to provide these nutrients to the future plants. The physical, physiological and nutritional characteristics of the coated seeds and initial development of plants in a greenhouse ...

Effects of dairy manure management in annual and perennial cropping systems on soil microbial communities associated with in situ N2O fluxes

Science.gov (United States)

Dunfield, Kari; Thompson, Karen; Bent, Elizabeth; Abalos, Diego; Wagner-Riddle, Claudia

2016-04-01

Liquid dairy manure (LDM) application and ploughing events may affect soil microbial community functioning differently between perennial and annual cropping systems due to plant-specific characteristics stimulating changes in microbial community structure. Understanding how these microbial communities change in response to varied management, and how these changes relate to in situ N2O fluxes may allow the creation of predictive models for use in the development of best management practices (BMPs) to decrease nitrogen (N) losses through choice of crop, plough, and LDM practices. Our objectives were to contrast changes in the population sizes and community structures of genes associated with nitrifier (amoA, crenamoA) and denitrifier (nirK, nirS, nosZ) communities in differently managed annual and perennial fields demonstrating variation in N2O flux, and to determine if differences in these microbial communities were linked to the observed variation in N2O fluxes. Soil was sampled in 2012 and in 2014 in a 4-ha spring-applied LDM grass-legume (perennial) plot and two 4-ha corn (annual) treatments under fall or spring LDM application. Soil DNA was extracted and used to target N-cycling genes via qPCR (n=6) and for next-generation sequencing (Illumina Miseq) (n=3). Significantly higher field-scale N2O fluxes were observed in the annual plots compared to the perennial system; however N2O fluxes increased after plough down of the perennial plot. Nonmetric multidimensional scaling (NMS) indicated differences in N-cycling communities between annual and perennial cropping systems, and some communities became similar between annual and perennial plots after ploughing. Shifts in these communities demonstrated relationships with agricultural management, which were associated with differences in N2O flux. Indicator species analysis was used to identify operational taxonomic units (OTUs) most responsible for community shifts related to management. Nitrifying and denitrifying soil

Linking resilience theory and diffusion of innovations theory to understand the potential for perennials in the U.S. Corn Belt

Science.gov (United States)

Ryan C. Atwell; Lisa A. Schulte; Lynne M. Westphal

2009-01-01

In the last 200 yr, more than 80% of the land in the U.S. Corn Belt agro-ecosystem has been converted from natural perennial vegetation to intensive agricultural production of row crops. Despite research showing how re-integration of perennial vegetation, e.g., cover crops, pasture, riparian buffers, and restored wetlands, at strategic landscape positions can bolster...

Study on absorption and translocation amounts of 2,4-D on perennial weed( Glycyrrhiza glabra) by 19 C- labelled herbicides tracer technique

International Nuclear Information System (INIS)

Ahari Mostafavi, H.; Fatholahi, H.; Naserian, B.

2004-01-01

Glycyrrhiza glabra a perennial broad leaf weed, is very difficult to control due to it's powerful root system. The best chemical treatment to perennial weeds control is the application of systemic herbicides and their effect is related to amount of permeability and mobility

Dry matter production of perennial pasture Tifton 85 (Cynodon spp under different doses of fertilization

Directory of Open Access Journals (Sweden)

Karlize Prigol

2012-12-01

Full Text Available Dairy farming is an activity that provides the small rural farmer the opportunity to earn income in small areas of land. The perennial pastures represent a source for a cheap and nutritious diet for the animals. The correct management of perennial pastures can be the key to sustainability in the dairy business, resulting in the preservation or recovery of the balance of a pasture system, starting with the pursuit of production with low costs and good pasture production per unit area. The correct choice of fertilizer is of great importance to ensure the continuous production of pasture both in quantity and in quality. The aim of this study was to evaluate the dry matter production of perennial pasture consisting of Tifton 85 (Cynodon spp under different nutrient sources on a typical dystrophic Red Latosol, presents in a region where the climate is characterized as humid-mesothermic with a hot summer, Cfa according to Köppen, with an average annual rainfall of 2039 mm, well distributed throughout the year and average annual temperatures around 18 º C, varying monthly from 14.1 to 23 º C. The treatments consisted of three nutrient sources: 1 organic manure, a base of chicken bedding (average values of reference NPK (02/03/02, 2 organic manure + mineral - organic mineral, with application of 606 kg ha-1 (04/10/10 Formula, aiming to adjust the same amounts of NPK supplied by mineral fertilizer and, 3 Mineral. The experimental design was a randomized blocks with nine replications. We collected five samples of each pasture treatment for determination of the average. After cutting the pasture of Tifton 85, the samples were subjected to weighing for determination of wet weight and then taken to the drying oven (temperature 65 ° C for 72 hours to determine dry matter production. The statistical analysis was performed with SAS for Windows computer system (SAS and the results submitted to the Tukey test at 5%. The highest dry matter yield (kg ha-1 was

Genome-wide association scan meta-analysis identifies three loci influencing adiposity and fat distribution

NARCIS (Netherlands)

C.M. Lindgren (Cecilia); I.M. Heid (Iris); J.C. Randall (Joshua); C. Lamina (Claudia); V. Steinthorsdottir (Valgerdur); L. Qi (Lu); E.K. Speliotes (Elizabeth); G. Thorleifsson (Gudmar); C.J. Willer (Cristen); B.M. Herrera (Blanca); A.U. Jackson (Anne); N. Lim (Noha); P. Scheet (Paul); N. Soranzo (Nicole); N. Amin (Najaf); Y.S. Aulchenko (Yurii); J.C. Chambers (John); A. Drong (Alexander); J. Luan; H.N. Lyon (Helen); F. Rivadeneira Ramirez (Fernando); S. Sanna (Serena); N.J. Timpson (Nicholas); M.C. Zillikens (Carola); H.Z. Jing; P. Almgren (Peter); S. Bandinelli (Stefania); A.J. Bennett (Amanda); R.N. Bergman (Richard); L.L. Bonnycastle (Lori); S. Bumpstead (Suzannah); S.J. Chanock (Stephen); L. Cherkas (Lynn); P.S. Chines (Peter); L. Coin (Lachlan); C. Cooper (Charles); G. Crawford (Gabe); A. Doering (Angela); A. Dominiczak (Anna); A.S.F. Doney (Alex); S. Ebrahim (Shanil); P. Elliott (Paul); M.R. Erdos (Michael); K. Estrada Gil (Karol); L. Ferrucci (Luigi); G. Fischer (Guido); N.G. Forouhi (Nita); C. Gieger (Christian); H. Grallert (Harald); C.J. Groves (Christopher); S.M. Grundy (Scott); C. Guiducci (Candace); D. Hadley (David); A. Hamsten (Anders); A.S. Havulinna (Aki); A. Hofman (Albert); R. Holle (Rolf); J.W. Holloway (John); T. Illig (Thomas); B. Isomaa (Bo); L.C. Jacobs (Leonie); K. Jameson (Karen); P. Jousilahti (Pekka); F. Karpe (Fredrik); J. Kuusisto (Johanna); J. Laitinen (Jaana); G.M. Lathrop (Mark); D.A. Lawlor (Debbie); M. Mangino (Massimo); W.L. McArdle (Wendy); T. Meitinger (Thomas); M.A. Morken (Mario); A.P. Morris (Andrew); P. Munroe (Patricia); N. Narisu (Narisu); A. Nordström (Anna); B.A. Oostra (Ben); C.N.A. Palmer (Colin); F. Payne (Felicity); J. Peden (John); I. Prokopenko (Inga); F. Renström (Frida); A. Ruokonen (Aimo); V. Salomaa (Veikko); M.S. Sandhu (Manjinder); L.J. Scott (Laura); A. Scuteri (Angelo); K. Silander (Kaisa); K. Song (Kijoung); X. Yuan (Xin); H.M. Stringham (Heather); A.J. Swift (Amy); T. Tuomi (Tiinamaija); M. Uda (Manuela); P. Vollenweider (Peter); G. Waeber (Gérard); C. Wallace (Chris); G.B. Walters (Bragi); M.N. Weedon (Michael); J.C.M. Witteman (Jacqueline); C. Zhang (Cuilin); M. Caulfield (Mark); F.S. Collins (Francis); G.D. Smith; I.N.M. Day (Ian); P.W. Franks (Paul); A.T. Hattersley (Andrew); F.B. Hu (Frank); M.-R. Jarvelin (Marjo-Riitta); A. Kong (Augustine); J.S. Kooner (Jaspal); M. Laakso (Markku); E. Lakatta (Edward); V. Mooser (Vincent); L. Peltonen (Leena Johanna); N.J. Samani (Nilesh); T.D. Spector (Timothy); D.P. Strachan (David); T. Tanaka (Toshiko); J. Tuomilehto (Jaakko); A.G. Uitterlinden (André); P. Tikka-Kleemola (Päivi); N.J. Wareham (Nick); H. Watkins (Hugh); D. Waterworth (Dawn); M. Boehnke (Michael); P. Deloukas (Panagiotis); L. Groop (Leif); D.J. Hunter (David); U. Thorsteinsdottir (Unnur); D. Schlessinger (David); H.E. Wichmann (Erich); T.M. Frayling (Timothy); G.R. Abecasis (Gonçalo); J.N. Hirschhorn (Joel); R.J.F. Loos (Ruth); J-A. Zwart (John-Anker); K.L. Mohlke (Karen); I.E. Barroso (Inês); M.I. McCarthy (Mark)

2009-01-01

textabstractTo identify genetic loci influencing central obesity and fat distribution, we performed a meta-analysis of 16 genome-wide association studies (GWAS, N = 38,580) informative for adult waist circumference (WC) and waist-hip ratio (WHR). We selected 26 SNPs for follow-up, for which the

Returning succession to downy brome dominated rangelands: roadblocks to perennial grass establishment

Science.gov (United States)

The most common cause of successional retrogression in the Great Basin is wildfires fueled by downy brome (Bromus tectorum). Downy brome invasion has reduced fire intervals from an estimated 60-100 years down to 5-10 years. Our previous research found that establishment of long-lived perennial grass...

Nasal budesonide offers superior symptom relief in perennial allergic rhinitis in comparison to nasal azelastine.

Science.gov (United States)

Stern, M A; Wade, A G; Ridout, S M; Cambell, L M

1998-10-01

Allergic rhinitis is usually treated with oral antihistamines or nasal steroids. Topically active nasal antihistamine is a new treatment modality for allergic rhinitis. The efficacy in comparison to well established topical treatment alternatives is not fully known. To compare the efficacy of intranasally administered azelastine to budesonide, at their respectively recommended dosage, on the symptoms of perennial rhinitis patients. A placebo-controlled, randomized, parallel group study was conducted to compare the efficacy and tolerability of intranasal budesonide aqueous suspension (256 microg once daily) with azelastine hydrochloride nasal spray (280 microg twice daily (560 microg/day)) and with placebo in the treatment of perennial allergic rhinitis. The 195 patients (with at least a 2-year history of perennial allergic rhinitis) recorded individual nasal symptom scores, the degree of symptom control achieved and any adverse events experienced over a 2-week baseline period and a 6-week treatment period. Following treatment, the reductions in mean combined and individual nasal symptom scores from baseline values were significantly greater in the budesonide group compared with the placebo group (P < .0001 for all variables except runny nose P = .01). In patients treated with budesonide, there were also significantly larger reductions from baseline values in combined nasal symptom scores (P < .01) and in scores for all individual nasal symptoms (P < or = .05) compared with those treated with azelastine. The reductions from baseline in both combined and individual nasal symptom scores did not differ between azelastine and placebo. The study medications were well tolerated, producing no unexpected or serious treatment-related adverse events. A once-daily dose of 256 microg of intranasal budesonide aqueous suspension is significantly more effective at relieving the symptoms of perennial allergic rhinitis compared with a twice daily dose of 280 microg of azelastine

Nitrogen removal and nitrate leaching for two perennial, sod-based forage systems receiving dairy effluent.

Science.gov (United States)

Woodard, Kenneth R; French, Edwin C; Sweat, Lewin A; Graetz, Donald A; Sollenberger, Lynn E; Macoon, Bisoondat; Portier, Kenneth M; Rymph, Stuart J; Wade, Brett L; Prine, Gordon M; Van Horn, Harold H

2003-01-01

In northern Florida, year-round forage systems are used in dairy effluent sprayfields to reduce nitrate leaching. Our purpose was to quantify forage N removal and monitor nitrate N (NO3(-)-N) concentration below the rooting zone for two perennial, sod-based, triple-cropping systems over four 12-mo cycles (1996-2000). The soil is an excessively drained Kershaw sand (thermic, uncoated Typic Quartzip-samment). Effluent N rates were 500, 690, and 910 kg ha(-1) per cycle. Differences in N removal between a corn (Zea mays L.)-bermudagrass (Cynodon spp.)-rye (Secale cereale L.) system (CBR) and corn-perennial peanut (Arachis glabrata Benth.)-rye system (CPR) were primarily related to the performance of the perennial forages. Nitrogen removal of corn (125-170 kg ha(-1)) and rye (62-90 kg ha(-1)) was relatively stable between systems and among cycles. The greatest N removal was measured for CBR in the first cycle (408 kg ha(-1)), with the bermudagrass removing an average of 191 kg N ha(-1). In later cycles, N removal for bermudagrass declined because dry matter (DM) yield declined. Yield and N removal of perennial peanut increased over the four cycles. Nitrate N concentrations below the rooting zone were lower for CBR than CPR in the first two cycles, but differences were inconsistent in the latter two. The CBR system maintained low NO3(-)-N leaching in the first cycle when the bermudagrass was the most productive; however, it was not a sustainable system for long-term prevention of NO3(-)-N leaching due to declining bermudagrass yield in subsequent cycles. For CPR, effluent N rates > or = 500 kg ha(-1) yr(-1) have the potential to negatively affect ground water quality.

Novel application of ALMANAC: Modelling a functional group, exotic warm-season perennial grasses

Science.gov (United States)

Introduced perennial C4 grasses such buffelgrass (Pennisetum ciliare [(L.) Link]) and old world bluestems (OWB), including genera such as Bothriochloa Kuntze, Capillipedium Stapf, and Dichanthium Willemet have the potential to dominate landscapes. A process-based model that realistically simulates ...

Evaluating winter/spring seeding of a native perennial bunchgrass in the sagebrush steppe

Science.gov (United States)

Sagebrush (Artemisia tridentata Nutt.) plant communities in the US Great Basin region are being severely impacted by increasingly frequent wildfires in association with the expansion of exotic annual grasses. Maintenance of native perennial bunchgrasses is key to controlling annual grass expansion,...

UNUSUALLY WIDE BINARIES: ARE THEY WIDE OR UNUSUAL?

International Nuclear Information System (INIS)

Kraus, Adam L.; Hillenbrand, Lynne A.

2009-01-01

We describe an astrometric and spectroscopic campaign to confirm the youth and association of a complete sample of candidate wide companions in Taurus and Upper Sco. Our survey found 15 new binary systems (three in Taurus and 12 in Upper Sco) with separations of 3''-30'' (500-5000 AU) among all of the known members with masses of 2.5-0.012 M sun . The total sample of 49 wide systems in these two regions conforms to only some expectations from field multiplicity surveys. Higher mass stars have a higher frequency of wide binary companions, and there is a marked paucity of wide binary systems near the substellar regime. However, the separation distribution appears to be log-flat, rather than declining as in the field, and the mass ratio distribution is more biased toward similar-mass companions than the initial mass function or the field G-dwarf distribution. The maximum separation also shows no evidence of a limit at ∼ sun . We attribute this result to the post-natal dynamical sculpting that occurs for most field systems; our binary systems will escape to the field intact, but most field stars are formed in denser clusters and undergo significant dynamical evolution. In summary, only wide binary systems with total masses ∼ sun appear to be 'unusually wide'.

Alcohol consumption and the risk of self-reported perennial and seasonal allergic rhinitis in young adult women in a population-based cohort study

DEFF Research Database (Denmark)

Bendtsen, P; Grønbæk, M; Kjær, S. K.

2008-01-01

Background Alcohol consumption has been suggested to be associated with the development of allergic rhinitis (AR), but there is limited data on the topic. Objectives The objective of this study was to investigate the association between alcohol consumption and the risk of developing AR among young...... women. Methods Five thousand eight hundred and seventy Danish women aged 20-29 years participated in a prospective cohort study, and were free of seasonal and perennial AR at baseline (1991-1993). Alcohol consumption was assessed by a food frequency questionnaire. The main outcome measures were self......-reported information on seasonal and perennial AR debuting during a mean follow-up period of 7.8 years. Results During follow-up, 831 women developed seasonal AR and 523 women developed perennial AR, corresponding to 14% and 9%. Alcohol consumption was positively associated with the risk of developing perennial AR...

Quantitative Trait Locus (QTL meta-analysis and comparative genomics for candidate gene prediction in perennial ryegrass (Lolium perenne L.

Directory of Open Access Journals (Sweden)

Shinozuka Hiroshi

2012-11-01

Full Text Available Abstract Background In crop species, QTL analysis is commonly used for identification of factors contributing to variation of agronomically important traits. As an important pasture species, a large number of QTLs have been reported for perennial ryegrass based on analysis of biparental mapping populations. Further characterisation of those QTLs is, however, essential for utilisation in varietal improvement programs. Results A bibliographic survey of perennial ryegrass trait-dissection studies identified a total of 560 QTLs from previously published papers, of which 189, 270 and 101 were classified as morphology-, physiology- and resistance/tolerance-related loci, respectively. The collected dataset permitted a subsequent meta-QTL study and implementation of a cross-species candidate gene identification approach. A meta-QTL analysis based on use of the BioMercator software was performed to identify two consensus regions for pathogen resistance traits. Genes that are candidates for causal polymorphism underpinning perennial ryegrass QTLs were identified through in silico comparative mapping using rice databases, and 7 genes were assigned to the p150/112 reference map. Markers linked to the LpDGL1, LpPh1 and LpPIPK1 genes were located close to plant size, leaf extension time and heading date-related QTLs, respectively, suggesting that these genes may be functionally associated with important agronomic traits in perennial ryegrass. Conclusions Functional markers are valuable for QTL meta-analysis and comparative genomics. Enrichment of such genetic markers may permit further detailed characterisation of QTLs. The outcomes of QTL meta-analysis and comparative genomics studies may be useful for accelerated development of novel perennial ryegrass cultivars with desirable traits.

Abiotic factors affect the recruitment and biomass of perennial grass and evergreen shrub seedlings in denuded areas of Patagonian Monte rangelands.

Science.gov (United States)

Bosco, Tomás; Bertiller, Mónica Beatriz; Carrera, Analía Lorena

2018-07-15

Assessing the ability of key species to cope with environmental stresses in disturbed areas is an important issue for recovery of degraded arid ecosystem. Our objective was to evaluate the effect of soil moisture, exposure to UV radiation, and presence/absence of litter with different chemistry on soil N, recruitment and biomass of seedlings of perennial grass (Poa ligularis and Nassella tenuis) and evergreen shrub species (Atriplex lampa and Larrea divaricata) in denuded areas. We carried out a microcosm experiment with soil blocks (28 cm depth) sowed with seeds of the target species, subjected to different levels of litter type (perennial grass-evergreen shrub mixture, evergreen shrub mixture, and no litter), UV radiation (near ambient and reduced UV), and soil water (high: 15-25% and low 5-15%). Periodically, during 6 months, we assessed soil-N (total and inorganic) at two depths and species seedling recruitment at microcosms. Additionally, emerged seedlings of each species were transplanted to individual pots containing soil and subjected to the same previous factors during 12 months. Then, all plants were harvested and biomass assessed. Only inorganic soil-N at the upper soil varied among treatments increasing with the presence of evergreen shrub litter, exposure to ambient UV, and high soil water. Inorganic soil-N, promoted by near ambient UV and high soil water, had a positive effect on recruitment of perennial grasses and A. lampa. Both litter types promoted the recruitment of perennial grasses. Evergreen shrub litter and high soil water promoted the recruitment of L. divaricata. Seedling biomass of perennial grasses increased with high soil water and reduced UV. Ambient UV had positive or null effects on biomass of evergreen shrub seedlings. High soil water increased biomass of L. divaricata seedlings. We concluded that soil water appeared as the most limiting factor for seedling recruitment of all species whereas inorganic soil N limited the

Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers

Czech Academy of Sciences Publication Activity Database

Tomaszewski, C.; Byrne, S. L.; Foito, A.; Kildea, S.; Kopecký, David; Doležel, Jaroslav; Heslop-Harrison, J. S.; Stewart, D.; Barth, S.

2012-01-01

Roč. 131, č. 2 (2012), s. 345-349 ISSN 0179-9541 Institutional research plan: CEZ:AV0Z50380511 Keywords : Lolium perenne * perennial ryegrass * genetic map Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.175, year: 2012

Accumulation and distribution of heavy metal in perennials parts of vine in five local varieties (Riling, Smederevka, Hamburg, Kratoshija and Afus-Ali ) from Ovche Pole (R. Macedonia)

International Nuclear Information System (INIS)

Karakasheva, Elizabeta; Jovanova, Sonja; Boev, Blazho

2012-01-01

This work was conducted in vineyards located in Ovče Pole, near the village of Krivi dol , in the eastern part of Macedonia, in order to assess the bio-accumulation and distribution of trace elements in perennial part of grape, in five local varieties (Rizling, Smederevka, Hamburg, Kratošia and Afus-Ali). For this purpose, the content of trace elements in soil and in the perennials parts of the vine: leaves, branches and grapefruit were measured, in all five local varieties.The content of Zn in soils varied from 75.7- 96.33 mg/kg, Ni from 1.69 to 4.45 mg/ kg, Cu from 34.1- 53.6 mg/ kg, Ba from 65.8- 140.5 mg/kg, Sr from 56,3-150,9 mg/kg, As from 5.48 -13.59 mg/kg, Mo from 1.99 to 3.1 mg/kg, Pb from 14.19-26.9 mg/kg, Ti from 119-239 mg/kg, Fe from 2482-3080 mg/kg, Mn from 722-1081 mg/kg and Al from 2646-4012 mg/kg, respectively. The content of Zn in plant varied from 154.8- 188.5 mg/kg, Ni from 145.1 to 191.8 mg/kg, Cu from 31.1 to 51.5 mg/kg, Ba from 15.7 to 24.2 mg/kg, Sr from 186.5 to 287.8 mg/kg, As from 9.78-27.7 mg/kg, Mo from 0.28 to 1.44 mg/kg, Pb from 5.25 to 13.56 mg/kg, Ti from 3.73 to 7.38 mg/kg, Fe from 345 to 464.5 mg/kg, Mn from 352.3 to 400.2 mg/kg and Al from 130.8 to 256.5 mg/kg, respectively. The contents of Zn,Ba, As, Mo, and Pb not exceeded the maximum allowable content (MAC) in all soil (The Now Dutch list). The highest content of Cu and Ni (The Now Dutch list) were founded in all vineyard soil from Ovče pole. Considering the value for bioaccumulation factor (BAF), grape vine for Zn, Sr, Cu and As possessed the characteristics of hyper accumulator. Most of the accumulated metals are mainly concentrated in the leaves of the vine, with the exception of As, which are concentrated in the fruit of the vine. (Author)

Belowground Water Dynamics Under Contrasting Annual and Perennial Plant Communities in an Agriculturally-Dominated Landscape

Science.gov (United States)

Mora, G.; Asbjornsen, H.; Helmers, M. J.; Shepherd, G. W.

2005-12-01

The conversion from grasslands and forests to row-crops in the Midwest has affected soil water cycling because plant characteristics are one of the main parameters determining soil storage capacity, infiltration rates, and surface runoff. Little is known, however, about the extent of modification of soil water dynamics under different plant communities. To address this important issue, we are documenting soil water dynamics under contrasting perennial and annual plant communities in an agriculturally-dominated landscape. Measurements of soil moisture and depths of uptake of source water were obtained for six vegetative cover types (corn and soybean field, brome pasture, degraded savanna, restored savanna, and restored prairie) at the Neal Smith National Wildlife Refuge in Prairie City, Iowa. The depths of uptake of soil water were determined on the basis of oxygen isotope composition of soil water and stem water. Measurements were performed once a month during an entire growing season. Preliminary results indicate that soil water present under the different vegetation types show similar profiles with depth during the dry months. Soil water in the upper 5 cm is enriched in oxygen-18 by about 5 per mil relative to soil water at 100 cm. Our preliminary results also indicate that the isotopic composition of stem water from annual plants is typically higher by about 2 per mil relative to that of stem water from perennial plants during the dry period. Whereas the oxygen isotopic composition for corn stem water is -5.49 per mil, that for elm and oak stem water is -7.62 and -7.51 per mil, respectively. The higher isotope values for corn suggest that annual crop plants are withdrawing water from shallower soil horizons relative to perennial plants. Moreover, our preliminary data suggest lower moisture content in soil under annual plant cover. We propose that the presence of deeper roots in the perennial vegetation allows these plants to tap into deeper water sources when

An Empirical Bayes Mixture Model for Effect Size Distributions in Genome-Wide Association Studies.

Directory of Open Access Journals (Sweden)

Wesley K Thompson

2015-12-01

Full Text Available Characterizing the distribution of effects from genome-wide genotyping data is crucial for understanding important aspects of the genetic architecture of complex traits, such as number or proportion of non-null loci, average proportion of phenotypic variance explained per non-null effect, power for discovery, and polygenic risk prediction. To this end, previous work has used effect-size models based on various distributions, including the normal and normal mixture distributions, among others. In this paper we propose a scale mixture of two normals model for effect size distributions of genome-wide association study (GWAS test statistics. Test statistics corresponding to null associations are modeled as random draws from a normal distribution with zero mean; test statistics corresponding to non-null associations are also modeled as normal with zero mean, but with larger variance. The model is fit via minimizing discrepancies between the parametric mixture model and resampling-based nonparametric estimates of replication effect sizes and variances. We describe in detail the implications of this model for estimation of the non-null proportion, the probability of replication in de novo samples, the local false discovery rate, and power for discovery of a specified proportion of phenotypic variance explained from additive effects of loci surpassing a given significance threshold. We also examine the crucial issue of the impact of linkage disequilibrium (LD on effect sizes and parameter estimates, both analytically and in simulations. We apply this approach to meta-analysis test statistics from two large GWAS, one for Crohn's disease (CD and the other for schizophrenia (SZ. A scale mixture of two normals distribution provides an excellent fit to the SZ nonparametric replication effect size estimates. While capturing the general behavior of the data, this mixture model underestimates the tails of the CD effect size distribution. We discuss the

An Empirical Bayes Mixture Model for Effect Size Distributions in Genome-Wide Association Studies.

Science.gov (United States)

Thompson, Wesley K; Wang, Yunpeng; Schork, Andrew J; Witoelar, Aree; Zuber, Verena; Xu, Shujing; Werge, Thomas; Holland, Dominic; Andreassen, Ole A; Dale, Anders M

2015-12-01

Characterizing the distribution of effects from genome-wide genotyping data is crucial for understanding important aspects of the genetic architecture of complex traits, such as number or proportion of non-null loci, average proportion of phenotypic variance explained per non-null effect, power for discovery, and polygenic risk prediction. To this end, previous work has used effect-size models based on various distributions, including the normal and normal mixture distributions, among others. In this paper we propose a scale mixture of two normals model for effect size distributions of genome-wide association study (GWAS) test statistics. Test statistics corresponding to null associations are modeled as random draws from a normal distribution with zero mean; test statistics corresponding to non-null associations are also modeled as normal with zero mean, but with larger variance. The model is fit via minimizing discrepancies between the parametric mixture model and resampling-based nonparametric estimates of replication effect sizes and variances. We describe in detail the implications of this model for estimation of the non-null proportion, the probability of replication in de novo samples, the local false discovery rate, and power for discovery of a specified proportion of phenotypic variance explained from additive effects of loci surpassing a given significance threshold. We also examine the crucial issue of the impact of linkage disequilibrium (LD) on effect sizes and parameter estimates, both analytically and in simulations. We apply this approach to meta-analysis test statistics from two large GWAS, one for Crohn's disease (CD) and the other for schizophrenia (SZ). A scale mixture of two normals distribution provides an excellent fit to the SZ nonparametric replication effect size estimates. While capturing the general behavior of the data, this mixture model underestimates the tails of the CD effect size distribution. We discuss the implications of

B chromosomes are associated with redistribution of genetic recombination towards lower recombination chromosomal regions in perennial ryegrass.

Science.gov (United States)

Harper, John; Phillips, Dylan; Thomas, Ann; Gasior, Dagmara; Evans, Caron; Powell, Wayne; King, Julie; King, Ian; Jenkins, Glyn; Armstead, Ian

2018-04-09

Supernumerary 'B' chromosomes are non-essential components of the genome present in a range of plant and animal species-including many grasses. Within diploid and polyploid ryegrass and fescue species, including the forage grass perennial ryegrass (Lolium perenne L.), the presence of B chromosomes has been reported as influencing both chromosome pairing and chiasma frequencies. In this study, the effects of the presence/absence of B chromosomes on genetic recombination has been investigated through generating DArT (Diversity Arrays Technology) marker genetic maps for six perennial ryegrass diploid populations, the pollen parents of which contained either two B or zero B chromosomes. Through genetic and cytological analyses of these progeny and their parents, we have identified that, while overall cytological estimates of chiasma frequencies were significantly lower in pollen mother cells with two B chromosomes as compared with zero B chromosomes, the recombination frequencies within some marker intervals were actually increased, particularly for marker intervals in lower recombination regions of chromosomes, namely pericentromeric regions. Thus, in perennial ryegrass, the presence of two B chromosomes redistributed patterns of meiotic recombination in pollen mother cells in ways which could increase the range of allelic variation available to plant breeders.

Field and long-term demonstration of a wide area quantum key distribution network.

Science.gov (United States)

Wang, Shuang; Chen, Wei; Yin, Zhen-Qiang; Li, Hong-Wei; He, De-Yong; Li, Yu-Hu; Zhou, Zheng; Song, Xiao-Tian; Li, Fang-Yi; Wang, Dong; Chen, Hua; Han, Yun-Guang; Huang, Jing-Zheng; Guo, Jun-Fu; Hao, Peng-Lei; Li, Mo; Zhang, Chun-Mei; Liu, Dong; Liang, Wen-Ye; Miao, Chun-Hua; Wu, Ping; Guo, Guang-Can; Han, Zheng-Fu

2014-09-08

A wide area quantum key distribution (QKD) network deployed on communication infrastructures provided by China Mobile Ltd. is demonstrated. Three cities and two metropolitan area QKD networks were linked up to form the Hefei-Chaohu-Wuhu wide area QKD network with over 150 kilometers coverage area, in which Hefei metropolitan area QKD network was a typical full-mesh core network to offer all-to-all interconnections, and Wuhu metropolitan area QKD network was a representative quantum access network with point-to-multipoint configuration. The whole wide area QKD network ran for more than 5000 hours, from 21 December 2011 to 19 July 2012, and part of the network stopped until last December. To adapt to the complex and volatile field environment, the Faraday-Michelson QKD system with several stability measures was adopted when we designed QKD devices. Through standardized design of QKD devices, resolution of symmetry problem of QKD devices, and seamless switching in dynamic QKD network, we realized the effective integration between point-to-point QKD techniques and networking schemes.

Efficacy of montelukast for treating perennial allergic rhinitis.

Science.gov (United States)

Philip, George; Williams-Herman, Debora; Patel, Piyush; Weinstein, Steven F; Alon, Achilles; Gilles, Leen; Tozzi, Carol A; Dass, S Balachandra; Reiss, Theodore F

2007-01-01

Perennial allergic rhinitis (PAR) is a chronic inflammatory nasal condition in individuals exposed year-round to allergens. This was a double-blind study of 15- to 85-year-old patients randomly allocated to montelukast, 10 mg (n=630), placebo (n=613), or the positive control cetirizine, 10 mg (n=122) for 6 weeks. The primary efficacy end point was change from baseline in Daytime Nasal Symptoms Score (DNSS; mean of congestion, rhinorrhea, sneezing, and itching scores, rated daily by patients [scale: 0=none to 3=severe]) averaged during the initial 4 weeks (primary analysis) or entire 6 weeks of treatment. Also assessed were combined post hoc results of primary end point data from this study and another similarly designed study (Patel P, et al. Randomized, double-blind, placebo-controlled study of montelukast for treating perennial allergic rhinitis, Ann Allergy Asthma Immunol 95:551, 2005). Over 4 weeks, montelukast showed numerical improvement over placebo in DNSS (least-squares mean difference of -0.04 [95% confidence interval (CI}, -0.09, 0.01]); the difference between cetirizine and placebo was significant: -0.10 (95% CI, -0.19, -0.01). However, when averaged over 6 weeks, neither active treatment was significantly different from placebo. The Rhinoconjunctivitis Quality-of-Life score was significantly improved by montelukast (p < 0.05), but not by cetirizine, during 4 and 6 weeks. The treatment effect of montelukast, but not cetirizine, generally remained consistent through the 6 weeks of treatment. In pooled data, montelukast consistently improved DNSS versus placebo during all 6 weeks of treatment (-0.07 [95% CI, -0.10, -0.041). In conclusion, montelukast produced numerical improvement in daytime nasal symptoms and significant improvement in quality of life. In a pooled post hoc analysis, montelukast provided consistent improvement in daytime nasal symptoms over 6 weeks, supportive of an overall benefit in PAR.

Accuracy of Genomic Prediction in a Commercial Perennial Ryegrass Breeding Program

Directory of Open Access Journals (Sweden)

Dario Fè

2016-11-01

Full Text Available The implementation of genomic selection (GS in plant breeding, so far, has been mainly evaluated in crops farmed as homogeneous varieties, and the results have been generally positive. Fewer results are available for species, such as forage grasses, that are grown as heterogenous families (developed from multiparent crosses in which the control of the genetic variation is far more complex. Here we test the potential for implementing GS in the breeding of perennial ryegrass ( L. using empirical data from a commercial forage breeding program. Biparental F and multiparental synthetic (SYN families of diploid perennial ryegrass were genotyped using genotyping-by-sequencing, and phenotypes for five different traits were analyzed. Genotypes were expressed as family allele frequencies, and phenotypes were recorded as family means. Different models for genomic prediction were compared by using practically relevant cross-validation strategies. All traits showed a highly significant level of genetic variance, which could be traced using the genotyping assay. While there was significant genotype × environment (G × E interaction for some traits, accuracies were high among F families and between biparental F and multiparental SYN families. We have demonstrated that the implementation of GS in grass breeding is now possible and presents an opportunity to make significant gains for various traits.

Immunomodulatory and antioxidant protective effect of Sarcocornia perennis L. (swampfire) in lead intoxicated rat.

Science.gov (United States)

Gargouri, Manel; Hamed, Houda; Akrouti, Amel; Christian, Magné; Ksouri, Riadh; El Feki, Abdelfattah

2017-11-01

Lead (Pb) is a very toxic metal present in the environment, causing disturbances of several functions. Preventive or curative effects of halophytic plants against these disorders may be a promising and safe therapeutic strategy. Thus, this study was designed to evaluate in vivo immunomodulatory and antioxidant effects of Sarcocornia perennis extract (Sp) against lead toxicity in rats. Groups of six animals each were treated with plant extract (via food), 6 g/L lead acetate (via drinking water) or a combination of both. At the end of the three-week period, rat exposure to lead caused reduction of liver weight but an increase of that of kidney. Moreover, lead intoxication-induced oxidative stress manifested by significant increases of inflammatory cytokines (except IL-10) and lipid peroxidation (TBARS), compared with the control group. Meanwhile, interleukin-10 (IL-10) and glutathione levels (GSH), as well as antioxidant activities of superoxide dismutase (SOD), catalase (CAT) and glutathione peroxidase (GPx), were decreased. Considering liver and renal markers, lead treatment induced a significant increase in the activities of aminotransferases (AST, ALT), and in the levels of urea, creatinine and phosphorous, whereas total plasma protein, albumin and calcium levels were significantly decreased. S. perennis extract alone did not induce any significant changes in hepatic or renal markers, whereas the antioxidant markers were significantly increased. S. perennis supplementation significantly reduced the lead-induced elevation of serum IL-1ß, IL-6, TNF-α, IFN-γ and TBARS but increased the IL-10 and antioxidant enzyme activities. Overall, plant components ameliorated hepatorenal damages caused by lead.

Towards in vitro fertilization, gametosomatic cybridization and DNA transfer in perennial ryegrass (Lolium perenne L.)

NARCIS (Netherlands)

Maas, van der H.M.

1994-01-01

In this thesis, research towards invitro fertilization, gametosomatic cybridization andDNAtransfer in perennial ryegrass ( Loliumperenne L.), the most important forage

Association of candidate genes with drought tolerance traits in diverse perennial ryegrass accessions

Science.gov (United States)

Xiaoqing Yu; Guihua Bai; Shuwei Liu; Na Luo; Ying Wang; Douglas S. Richmond; Paula M. Pijut; Scott A. Jackson; Jianming Yu; Yiwei. Jiang

2013-01-01

Drought is a major environmental stress limiting growth of perennial grasses in temperate regions. Plant drought tolerance is a complex trait that is controlled by multiple genes. Candidate gene association mapping provides a powerful tool for dissection of complex traits. Candidate gene association mapping of drought tolerance traits was conducted in 192 diverse...

Expressed sequence tag-derived microsatellite markers of perennial ryegrass (Lolium perenne L.)

DEFF Research Database (Denmark)

Studer, Bruno; Asp, Torben; Frei, Ursula

2008-01-01

An expressed sequence tag (EST) library of the key grassland species perennial ryegrass (Lolium perenne L.) has been exploited as a resource for microsatellite marker development. Out of 955 simple sequence repeat (SSR) containing ESTs, 744 were used for primer design. Primer amplification was te...

The central and eastern Arabian Sea as a perennial source of atmospheric carbon dioxide

Digital Repository Service at National Institute of Oceanography (India)

Sarma, V.V.S.S.; DileepKumar, M.; George, M.D.

circulation and biological production. In all seasons, the pCO sub(2) is higher in surface waters of the Arabian Sea, except along the Indian coast in the southwest monsoon, than that in atmosphere, and thus this region appears to be a perennial source...

Teaching Writing: Some Perennial Questions and Some Possible Answers. Occasional Paper No. 85.

Science.gov (United States)

Florio-Ruane, Susan; Dunn, Saundra

Based on the premise that writing research will be useful to educators only to the extent that it offers them conceptual tools to use in framing and solving their own problems, this paper reviews studies that address educators' perennial concerns about writing instruction. Among the questions addressed in the paper are those concerning (1) the…

Fusarium-induced diseases of tropical, perennial crops.

Science.gov (United States)

Ploetz, Randy C

2006-06-01

ABSTRACT The world's oldest ecosystems are found in the tropics. They are diverse, highly evolved, but barely understood. This and subsequent papers describe diseases of tropical, perennial plants that are caused by Fusarium spp. Many of these are economically significant, difficult to manage, and of scientific interest. Some represent coevolved patho-systems (e.g., Panama disease, tracheomycosis of coffee, fusariosis of pineapple, and Fusarium wilt of oil palm), whereas others may be new-encounter diseases or are caused by generalist pathogens (cushion gall of cacao). New vector relationships are evident in other pathosystems (e.g., mango malformation), and two or more pathogens have been shown to cause some of the diseases (Panama disease and tracheomycosis of coffee). More work on these pathosystems is warranted as they could reveal much about the evolution of plant pathogens and the important diseases they cause.

Delayed chlorophyll a fluorescence, MR 820, and gas exchange changes in perennial ryegrass under salt stress

Energy Technology Data Exchange (ETDEWEB)

Dąbrowski, P., E-mail: piotr_dabrowski@sggw.pl [Department of Environmental Improvement, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Kalaji, M.H., E-mail: hazem@kalaji.pl [Department of Plant Physiology, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); SI TECHNOLOGY Sp. z o. o., Górczewska 226C/26, 01-460 Warsaw (Poland); Baczewska, A.H., E-mail: a.baczewska@obpan.pl [Polish Academy of Sciences Botanical Garden-Center for Biological Diversity Conservation in Powsin, 2 Prawdziwka St., 02-973 Warsaw (Poland); Pawluśkiewicz, B. [Department of Environmental Improvement, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Mastalerczuk, G., E-mail: grazyna_mastalerczuk@sggw.pl [Department of Agronomy, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Borawska-Jarmułowicz, B., E-mail: barbara_borawska_jarmulowicz@sggw.pl [Department of Agronomy, Warsaw University of Life Sciences-SGGW, 159 Nowoursynowska St., 02-776 Warsaw (Poland); Paunov, M. [Department Biophysics and Radiobiology, St. Kl. Ohridski Sofia University, 8 Dragan Tsankov Blvd., 1164 Sofia (Bulgaria); Goltsev, V., E-mail: goltsev@biofac.uni-sofia.bg [Department Biophysics and Radiobiology, St. Kl. Ohridski Sofia University, 8 Dragan Tsankov Blvd., 1164 Sofia (Bulgaria)

2017-03-15

Perennial ryegrass (Lolium perenne L.) is one of the more popular grass species in Europe. It is commonly used for starting lawns in urban areas, where plant growth is limited by many environmental conditions. The contamination of soils by salt is one of the major problems in urban green areas, as well as in natural areas. The basic aim of this study is to provide a detailed in vivo analysis of the changes in the delayed chlorophyll fluorescence and MR 820 signals (induced by salt stress) of two lawn varieties of perennial ryegrass, and to find out if there are correlations between these parameters and gas exchange. Two lawn varieties of Lolium perenne L. were used: Nira and Roadrunner. Salinization was performed at 8 weeks after sowing by adding NaCl in water solution (0, 0.15, and 0.30 M). There were 8 terms of measurement: 0 h, 24 h, 48 h, 96 h, 144 h, 192 h, 240 h, and 288 h after salinization. Our results showed that delayed fluorescence is a tool that can bring completely new opportunities for detecting stress in plants caused by salt. Our work allowed us to identify various limitation patterns in the photosynthetic efficiency of perennial ryegrass lawn varieties grown under salt stress conditions. Significant differences between the two tested varieties in response to salt stress were confirmed.

Delayed chlorophyll a fluorescence, MR 820, and gas exchange changes in perennial ryegrass under salt stress

International Nuclear Information System (INIS)

Dąbrowski, P.; Kalaji, M.H.; Baczewska, A.H.; Pawluśkiewicz, B.; Mastalerczuk, G.; Borawska-Jarmułowicz, B.; Paunov, M.; Goltsev, V.

2017-01-01

Perennial ryegrass (Lolium perenne L.) is one of the more popular grass species in Europe. It is commonly used for starting lawns in urban areas, where plant growth is limited by many environmental conditions. The contamination of soils by salt is one of the major problems in urban green areas, as well as in natural areas. The basic aim of this study is to provide a detailed in vivo analysis of the changes in the delayed chlorophyll fluorescence and MR 820 signals (induced by salt stress) of two lawn varieties of perennial ryegrass, and to find out if there are correlations between these parameters and gas exchange. Two lawn varieties of Lolium perenne L. were used: Nira and Roadrunner. Salinization was performed at 8 weeks after sowing by adding NaCl in water solution (0, 0.15, and 0.30 M). There were 8 terms of measurement: 0 h, 24 h, 48 h, 96 h, 144 h, 192 h, 240 h, and 288 h after salinization. Our results showed that delayed fluorescence is a tool that can bring completely new opportunities for detecting stress in plants caused by salt. Our work allowed us to identify various limitation patterns in the photosynthetic efficiency of perennial ryegrass lawn varieties grown under salt stress conditions. Significant differences between the two tested varieties in response to salt stress were confirmed.

Environmental Performance of Miscanthus, Switchgrass and Maize: Can C4 Perennials Increase the Sustainability of Biogas Production?

Directory of Open Access Journals (Sweden)

Andreas Kiesel

2016-12-01

Full Text Available Biogas is considered a promising option for complementing the fluctuating energy supply from other renewable sources. Maize is currently the dominant biogas crop, but its environmental performance is questionable. Through its replacement with high-yielding and nutrient-efficient perennial C4 grasses, the environmental impact of biogas could be considerably improved. The objective of this paper is to assess and compare the environmental performance of the biogas production and utilization of perennial miscanthus and switchgrass and annual maize. An LCA was performed using data from field trials, assessing the impact in the five categories: climate change (CC, fossil fuel depletion (FFD, terrestrial acidification (TA, freshwater eutrophication (FE and marine eutrophication (ME. A system expansion approach was adopted to include a fossil reference. All three crops showed significantly lower CC and FFD potentials than the fossil reference, but higher TA and FE potentials, with nitrogen fertilizer production and fertilizer-induced emissions identified as hot spots. Miscanthus performed best and changing the input substrate from maize to miscanthus led to average reductions of −66% CC; −74% FFD; −63% FE; −60% ME and −21% TA. These results show that perennial C4 grasses and miscanthus in particular have the potential to improve the sustainability of the biogas sector.

A Decade of Carbon Flux Measurements with Annual and Perennial Crop Rotations on the Canadian Prairies

Science.gov (United States)

Amiro, B. D.; Tenuta, M.; Gao, X.; Gervais, M.

2016-12-01

The Fluxnet database has over 100 cropland sites, some of which have long-term (over a decade) measurements. Carbon neutrality is one goal of sustainable agriculture, although measurements over many annual cropping systems have indicated that soil carbon is often lost. Croplands are complex systems because the CO2 exchange depends on the type of crop, soil, weather, and management decisions such as planting date, nutrient fertilization and pest management strategy. Crop rotations are often used to decrease pest pressure, and can range from a simple 2-crop system, to have 4 or more crops in series. Carbon dioxide exchange has been measured using the flux-gradient technique since 2006 in agricultural systems in Manitoba, Canada. Two cropping systems are being followed: one that is a rotation of annual crops (corn, faba bean, spring wheat, rapeseed, barley, spring wheat, corn, soybean, spring wheat, soybean); and the other with a perennial phase of alfalfa/grass in years 3 to 6. Net ecosystem production ranged from a gain of 330 g C m-2 y-1 in corn to a loss of 75 g C m-2 y-1 in a poor spring-wheat crop. Over a decade, net ecosystem production for the annual cropping system was not significantly different from zero (carbon neutral), but the addition of the perennial phase increased the sink to 130 g C m-2 y-1. Once harvest removals were included, there was a net loss of carbon ranging from 77 g C m-2 y-1 in the annual system to 52 g C m-2 y-1 in the annual-perennial system; but neither of these were significantly different from zero. Termination of the perennial phase of the rotation only caused short-term increases in respiration. We conclude that both these systems were close to carbon-neutral over a decade even though they were tilled with a short growing season (90 to 130 days). We discuss the need for more datasets on agricultural systems to inform management options to increase the soil carbon sink.

Ergot alkaloid intoxication in perennial ryegrass (Lolium perenne): an emerging animal health concern in Ireland?

Science.gov (United States)

Canty, Mary J; Fogarty, Ursula; Sheridan, Michael K; Ensley, Steve M; Schrunk, Dwayne E; More, Simon J

2014-01-01

Four primary mycotoxicosis have been reported in livestock caused by fungal infections of grasses or cereals by members of the Clavicipitaceae family. Ergotism (generally associated with grasses, rye, triticale and other grains) and fescue toxicosis (associated with tall fescue grass, Festuca arundinacea) are both caused by ergot alkaloids, and referred to as 'ergot alkaloid intoxication'. Ryegrass staggers (associated with perennial ryegrass Lolium perenne) is due to intoxication with an indole-diperpene, Lolitrem B, and metabolites. Fescue-associated oedema, recently described in Australia, may be associated with a pyrrolizidine alkaloid, N-acetyl norloline. Ergotism, caused by the fungus Claviceps purpurea, is visible and infects the outside of the plant seed. Fescue toxicosis and ryegrass staggers are caused by Neotyphodium coenophalium and N. lolii, respectively. Fescue-associated oedema has been associated with tall fescue varieties infected with a specific strain of N. coenophialum (AR542, Max P or Max Q). The name Neotyphodium refers to asexual derivatives of Epichloë spp., which have collectively been termed the epichloë fungi. These fungi exist symbiotically within the grass and are invisible to the naked eye. The primary toxicological effect of ergot alkaloid involves vasoconstriction and/or hypoprolactinaemia. Ingestion of ergot alkaloid by livestock can cause a range of effects, including poor weight gain, reduced fertility, hyperthermia, convulsions, gangrene of the extremities, and death. To date there are no published reports, either internationally or nationally, reporting ergot alkaloid intoxication specifically associated with perennial ryegrass endophytes. However, unpublished reports from the Irish Equine Centre have identified a potential emerging problem of ergot alkaloid intoxication with respect to equines and bovines, on primarily perennial ryegrass-based diets. Ergovaline has been isolated in varying concentrations in the herbage of a

Distributed nuclear medicine applications using World Wide Web and Java technology

International Nuclear Information System (INIS)

Knoll, P.; Hoell, K.; Koriska, K.; Mirzaei, S.; Koehn, H.

2000-01-01

At present, medical applications applying World Wide Web (WWW) technology are mainly used to view static images and to retrieve some information. The Java platform is a relative new way of computing, especially designed for network computing and distributed applications which enables interactive connection between user and information via the WWW. The Java 2 Software Development Kit (SDK) including Java2D API, Java Remote Method Invocation (RMI) technology, Object Serialization and the Java Advanced Imaging (JAI) extension was used to achieve a robust, platform independent and network centric solution. Medical image processing software based on this technology is presented and adequate performance capability of Java is demonstrated by an iterative reconstruction algorithm for single photon emission computerized tomography (SPECT). (orig.)

A Novel Wide-Area Backup Protection Based on Fault Component Current Distribution and Improved Evidence Theory

Directory of Open Access Journals (Sweden)

Zhe Zhang

2014-01-01

Full Text Available In order to solve the problems of the existing wide-area backup protection (WABP algorithms, the paper proposes a novel WABP algorithm based on the distribution characteristics of fault component current and improved Dempster/Shafer (D-S evidence theory. When a fault occurs, slave substations transmit to master station the amplitudes of fault component currents of transmission lines which are the closest to fault element. Then master substation identifies suspicious faulty lines according to the distribution characteristics of fault component current. After that, the master substation will identify the actual faulty line with improved D-S evidence theory based on the action states of traditional protections and direction components of these suspicious faulty lines. The simulation examples based on IEEE 10-generator-39-bus system show that the proposed WABP algorithm has an excellent performance. The algorithm has low requirement of sampling synchronization, small wide-area communication flow, and high fault tolerance.

A Novel Wide-Area Backup Protection Based on Fault Component Current Distribution and Improved Evidence Theory

Science.gov (United States)

Zhang, Zhe; Kong, Xiangping; Yin, Xianggen; Yang, Zengli; Wang, Lijun

2014-01-01

In order to solve the problems of the existing wide-area backup protection (WABP) algorithms, the paper proposes a novel WABP algorithm based on the distribution characteristics of fault component current and improved Dempster/Shafer (D-S) evidence theory. When a fault occurs, slave substations transmit to master station the amplitudes of fault component currents of transmission lines which are the closest to fault element. Then master substation identifies suspicious faulty lines according to the distribution characteristics of fault component current. After that, the master substation will identify the actual faulty line with improved D-S evidence theory based on the action states of traditional protections and direction components of these suspicious faulty lines. The simulation examples based on IEEE 10-generator-39-bus system show that the proposed WABP algorithm has an excellent performance. The algorithm has low requirement of sampling synchronization, small wide-area communication flow, and high fault tolerance. PMID:25050399

Performance, Economics and Potential Impact of Perennial Rice PR23 Relative to Annual Rice Cultivars at Multiple Locations in Yunnan Province of China

Directory of Open Access Journals (Sweden)

Guangfu Huang

2018-04-01

Full Text Available Perennial grain crops hold the promise of stabilizing fragile lands, while contributing grain and grazing in mixed farming systems. Recently, perennial rice was reported to successfully survive, regrow, and yield across a diverse range of environments in Southern China and Laos, with perennial rice PR23 being identified as a prime candidate for release to farmers. This paper reports the evaluation of PR23 for release, by (1 comparing its survival, regrowth, performance, and adaptation with preferred annual rices across nine ecological regions in southern Yunnan Province of China; (2 examining the economic costs and benefits of perennial versus annual rice there; and (3 discussing the evidence for the release of PR23 as a broadly adapted and acceptable cultivar for farmers. Overall, the grain yield of PR23 was similar to those of the preferred annual rice cultivars RD23 and HXR7, but the economic analysis indicated substantial labour savings for farmers by growing the perennial instead of the annual. PR23 was comparable to the annuals in phenology, plant height, grain yield, and grain size, and was acceptable in grain and cooking quality. Farmers were keen to grow it because of reduced costs and especially savings in labour. PR23 is proposed for release to farmers because of its comparable grain yields to annual rices, its acceptable grain and milling quality, its cost and labour savings, and the likely benefits to soil stability and ecological sustainability, along with more flexible farming systems.

Object Distribution Networks for World-wide Document Circulation

NARCIS (Netherlands)

Lijding, M.E.M.; Righetti, Claudio E.; Moldes, Leandro Navarro

1997-01-01

This paper presents an Object Distribution System (ODS), a distributed system inspired by the ultra-large scale distribution models used in everyday life (e.g. food or newspapers distribution chains). Beyond traditional mechanisms of approaching information to readers (e.g. caching and mirroring),

Testing water-soluble carbohydrate QTL effects in perennial ryegrass (Lolium perenne L.) by marker selection

NARCIS (Netherlands)

Turner, L.B.; Farrell, M.; Humphreys, M.O.; Dolstra, O.

2010-01-01

Water-soluble carbohydrates (WSC) are an important factor determining the nutritional value of grass forage and development of genetic markers for selection of WSC traits in perennial ryegrass would benefit future breeding programmes. Quantitative trait loci (QTLs) for WSC have been published for an

Reproduction and recruitment in perennial colonies of the introduced wasp Vespula germanica.

Science.gov (United States)

Goodisman, M A; Matthews, R W; Spradbery, J P; Carew, M E; Crozier, R H

2001-01-01

We investigated the genetic structure of perennial colonies of the yellowjacket wasp (Vespula germanica) in its introduced range in Australia and New Zealand. The nuclear genotypes of 712 gynes from 21 colonies, 147 workers from 5 colonies, and 81 males from 4 colonies were assayed at three polymorphic microsatellite loci. The mitochondrial haplotypes of all wasps also were determined for a 450-bp region of the mtDNA using double-stranded conformational polymorphism (DSCP) analysis. We found that multiple reproductives were needed to explain the genotypes of gynes, workers, and males in 7 of 21, 2 of 5, and 2 of 4 colonies, respectively, and that nestmate relatedness of these three castes equaled 0.42, 0.16, and 0.22, respectively. The mitochondrial data revealed that all individuals shared the same mtDNA haplotype in 20 of the 21 colonies. However, in one colony, gynes and workers displayed multiple mtDNA haplotypes, indicating that nonnestmate recruitment had occurred. Overall the genetic structure within the majority of perennial colonies conformed to expectations based on the biology of V. germanica and kin selection theory for polygyne colonies; multiple reproductives successfully produced offspring and were recruited into their natal nests, thereby maintaining relatively high relatedness between interacting individuals.

Artemisia systematics and phylogeny: Cytogenetic and molecular insights

Science.gov (United States)

Joan Valles; E. Durant. McArthur

2001-01-01

The genus Artemisia (Asteraceae, Anthemideae, Artemisiinae) is a large genus, one of the largest genera in its family. It is comprised of about 500 taxa at the specific or subspecific level, distributed in 5 sections or subgenera. Most species are perennial and many are landscape dominants of arid or semiarid regions. Artemisia is widely distributed in the Northern...

Genome-wide association of body fat distribution in African ancestry populations suggests new loci.

Directory of Open Access Journals (Sweden)

Ching-Ti Liu

Full Text Available Central obesity, measured by waist circumference (WC or waist-hip ratio (WHR, is a marker of body fat distribution. Although obesity disproportionately affects minority populations, few studies have conducted genome-wide association study (GWAS of fat distribution among those of predominantly African ancestry (AA. We performed GWAS of WC and WHR, adjusted and unadjusted for BMI, in up to 33,591 and 27,350 AA individuals, respectively. We identified loci associated with fat distribution in AA individuals using meta-analyses of GWA results for WC and WHR (stage 1. Overall, 25 SNPs with single genomic control (GC-corrected p-values<5.0 × 10(-6 were followed-up (stage 2 in AA with WC and with WHR. Additionally, we interrogated genomic regions of previously identified European ancestry (EA WHR loci among AA. In joint analysis of association results including both Stage 1 and 2 cohorts, 2 SNPs demonstrated association, rs2075064 at LHX2, p = 2.24×10(-8 for WC-adjusted-for-BMI, and rs6931262 at RREB1, p = 2.48×10(-8 for WHR-adjusted-for-BMI. However, neither signal was genome-wide significant after double GC-correction (LHX2: p = 6.5 × 10(-8; RREB1: p = 5.7 × 10(-8. Six of fourteen previously reported loci for waist in EA populations were significant (p<0.05 divided by the number of independent SNPs within the region in AA studied here (TBX15-WARS2, GRB14, ADAMTS9, LY86, RSPO3, ITPR2-SSPN. Further, we observed associations with metabolic traits: rs13389219 at GRB14 associated with HDL-cholesterol, triglycerides, and fasting insulin, and rs13060013 at ADAMTS9 with HDL-cholesterol and fasting insulin. Finally, we observed nominal evidence for sexual dimorphism, with stronger results in AA women at the GRB14 locus (p for interaction = 0.02. In conclusion, we identified two suggestive loci associated with fat distribution in AA populations in addition to confirming 6 loci previously identified in populations of EA. These findings reinforce the concept

Wide distribution of virulence genes among Enterococcus faecium and Enterococcus faecalis clinical isolates.

Science.gov (United States)

Soheili, Sara; Ghafourian, Sobhan; Sekawi, Zamberi; Neela, Vasanthakumari; Sadeghifard, Nourkhoda; Ramli, Ramliza; Hamat, Rukman Awang

2014-01-01

Enterococcus, a Gram-positive facultative anaerobic cocci belonging to the lactic acid bacteria of the phylum Firmicutes, is known to be able to resist a wide range of hostile conditions such as different pH levels, high concentration of NaCl (6.5%), and the extended temperatures between 5(°)C and 65(°)C. Despite being the third most common nosocomial pathogen, our understanding on its virulence factors is still poorly understood. The current study was aimed to determine the prevalence of different virulence genes in Enterococcus faecalis and Enterococcus faecium. For this purpose, 79 clinical isolates of Malaysian enterococci were evaluated for the presence of virulence genes. pilB, fms8, efaAfm, and sgrA genes are prevalent in all clinical isolates. In conclusion, the pathogenicity of E. faecalis and E. faecium could be associated with different virulence factors and these genes are widely distributed among the enterococcal species.

Wide Distribution of Virulence Genes among Enterococcus faecium and Enterococcus faecalis Clinical Isolates

Directory of Open Access Journals (Sweden)

Sara Soheili

2014-01-01

Full Text Available Enterococcus, a Gram-positive facultative anaerobic cocci belonging to the lactic acid bacteria of the phylum Firmicutes, is known to be able to resist a wide range of hostile conditions such as different pH levels, high concentration of NaCl (6.5%, and the extended temperatures between 5°C and 65°C. Despite being the third most common nosocomial pathogen, our understanding on its virulence factors is still poorly understood. The current study was aimed to determine the prevalence of different virulence genes in Enterococcus faecalis and Enterococcus faecium. For this purpose, 79 clinical isolates of Malaysian enterococci were evaluated for the presence of virulence genes. pilB, fms8, efaAfm, and sgrA genes are prevalent in all clinical isolates. In conclusion, the pathogenicity of E. faecalis and E. faecium could be associated with different virulence factors and these genes are widely distributed among the enterococcal species.

Use of Plant Growth Regulators to Improve Branching of Herbaceous Perennial Liners

OpenAIRE

Grossman, Mara Celeste

2012-01-01

The objective of this study is to evaluate the efficacy of PGRs to improve branching during production of herbaceous perennial liners and finished plants. The effects of benzyladenine (BA) on the branching and root and shoot growth of Agastache Clayt. Ex Gronov. 'Purple Hazeâ , Gaura lindheimeri Engelm. & A. Gray 'Siskiyou Pink', Lavandula à intermedia Emeric ex Loisel. 'Provence', Leucanthemum à superbum (Bergmans ex J.W. Ingram) Bergmans ex Kent. 'Snowcap', and Salvia à sylv...

Nitrogen cycling in summer active perennial grass systems in South Australia: Non-symbiotic nitrogen fixation

NARCIS (Netherlands)

Gupta, V.V.S.R.; Kroker, S.J.; Hicks, M.; Davoren, W.; Descheemaeker, K.K.E.; Llewellyn, R.

2014-01-01

Non-symbiotic nitrogen (N2) fixation by diazotrophic bacteria is a potential source for biological N inputs in non-leguminous crops and pastures. Perennial grasses generally add larger quantities of above- and belowground plant residues to soil, and so can support higher levels of soil biological

Syngas Production from Pyrolysis of Nine Composts Obtained from Nonhybrid and Hybrid Perennial Grasses

Directory of Open Access Journals (Sweden)

Adéla Hlavsová

2014-01-01

Full Text Available A pyrolysis of compost for the production of syngas with an explicit H2/CO = 2 or H2/CO = 3 was investigated in this study. The composts were obtained from nonhybrid (perennial grasses (NHG and hybrid (perennial grasses (HG. Discrepancies in H2 evolution profiles were found between NHG and HG composts. In addition, positive correlations for NHG composts were obtained between (i H2 yield and lignin content, (ii H2 yield and potassium content, and (iii CO yield and cellulose content. All composts resulted in H2/CO = 2 and five of the nine composts resulted in H2/CO = 3. Exceptionally large higher heating values (HHVs of pyrolysis gas, very close to HHVs of feedstock, were obtained for composts made from mountain brome (MB, 16.23 MJ/kg, hybrid Becva (FB, 16.45 MJ/kg, and tall fescue (TF, 17.43 MJ/kg. The MB and FB composts resulted in the highest syngas formation with H2/CO = 2, whereas TF compost resulted in the highest syngas formation with H2/CO = 3.

CASTOR: Widely Distributed Scalable Infospaces

Science.gov (United States)

2008-11-01

Symposium on Networked System Design and Implementation (NSDI 08). San Francisco , CA. April 2008. Gossip-based Distribution Estimation in Peer-to...and S. Paul. RMTP: A reliable multicast transport protocol. In INFOCOM, pages 1414–1424, San Francisco , CA, Mar. 1996. [22] T. Montgomery, B. Whetten...Fast approx- imate reconciliation of set differences. Boston University Computer Science Technical Report 2002-019., 2002. [5] L. Camargos , F. Pedone

Suggested Grid Code Modifications to Ensure Wide-Scale Adoption of Photovoltaic Energy in Distributed Power Generation Systems

DEFF Research Database (Denmark)

Yang, Yongheng; Enjeti, Prasad; Blaabjerg, Frede

2013-01-01

Current grid standards seem to largely require low power (e.g. several kilowatts) single-phase photovoltaic (PV) systems to operate at unity power factor with maximum power point tracking, and disconnect from the grid under grid faults. However, in case of a wide-scale penetration of single......-phase PV systems in the distributed grid, the disconnection under grid faults can contribute to: a) voltage flickers, b) power outages, and c) system instability. In this paper, grid code modifications are explored for wide-scale adoption of PV systems in the distribution grid. More recently, Italy...... and Japan, have undertaken a major review of standards for PV power conversion systems connected to low voltage networks. In view of this, the importance of low voltage ride-through for single-phase PV power systems under grid faults along with reactive power injection is studied in this paper. Three...

Perennial forbs for wildlife habitat restoration on mined lands in the northern Great Plains

Science.gov (United States)

Ardell J. Bjugstad; Warren C. Whitman

1982-01-01

Research was designed to assess the establishment and growth potential of 30 perennial forbs by seeding and/or transplanting them on coal mine spoil materials over a 2-year period. Five species showed exceptional emergence and vigorous growth from direct seeding. Six species showed vigorous growth with the use of transplanted plants. Seeding resulted in successful...

Radiation distribution measurement using plastic scintillating optical fibers for survey of radioactive contamination in wide area

International Nuclear Information System (INIS)

Ito, Chikara; Ito, Keisuke; Ishikawa, Takashi; Yoshida, Akihiro; Sanada, Yukihisa; Torii, Tatsuo; Nohtomi, Akihiro; Wakabayashi, Genichiro; Miyazaki, Nobuyuki

2013-01-01

It is important to examine distribution of environmental contamination due to the accident of Fukushima Daiichi Nuclear Power Station and to confirm the effect of decontamination works. We have applied radiation distribution measurement using plastic scintillating optical fibers (PSFs) in the survey of contamination in wide area including residential, farmland, forests, etc. In the measurements system, two scintillation lights that emitted at an incidence of a radiation transmit to photomultiplier tubes at the both end of PSFs. The position where scintillation light emitted is obtained from the detection time difference of each photomultiplier tube. The distribution of light emission quantity indicates the distribution of radiation incident in a PSF which is corresponds to the distribution of dose-rate. The radiation detection system using the PSFs has been applied to the radiation distribution measurement on grounds, trees, etc. The results show a good agreement with point data measured by survey meters using sodium iodide scintillators. As the PSFs which have water resistance, they have been successfully applied to the radiation distribution measurement in the river. We have also succeeded in measuring two-dimensional distribution of radiation by measuring the count rate while moving to the fiber at a constant speed. (author)

Optimal prescribed burn frequency to manage foundation California perennial grass species and enhance native flora

Science.gov (United States)

Grasslands can be diverse assemblages of grasses and forbs but not much is known how perennial grass species management affects native plant diversity except for in a few instances. We studied the use of late spring prescribed burns over a span of eleven years on experimental plots in which the pere...

Genome-wide divergence, haplotype distribution and population demographic histories for Gossypium hirsutum and Gossypium barbadense as revealed by genome-anchored SNPs

Science.gov (United States)

Use of 10,129 singleton SNPs of known genomic location in tetraploid cotton provided unique opportunities to characterize genome-wide diversity among 440 Gossypium hirsutum and 219 G. barbadense cultivars and landrace accessions of widespread origin. Using the SNPs distributed genome-wide, we exami...

Extending the shelf life of flower bulbs and perennials in consumer packages by modiefied atmosphere packaging

NARCIS (Netherlands)

Gude, H.; Dijkema, M.H.G.E.; Miller, C.T.

2011-01-01

The quality of flower bulbs and herbaceous perennials in consumer packages declines rapidly due to sprouting and drying out. The present study was undertaken to develop Modified Atmosphere Packages (MAP) with suitable filling materials for a prolonged shelf life of different species of flower bulbs

An Empirical Bayes Mixture Model for Effect Size Distributions in Genome-Wide Association Studies

DEFF Research Database (Denmark)

Thompson, Wesley K.; Wang, Yunpeng; Schork, Andrew J.

2015-01-01

-wide association study (GWAS) test statistics. Test statistics corresponding to null associations are modeled as random draws from a normal distribution with zero mean; test statistics corresponding to non-null associations are also modeled as normal with zero mean, but with larger variance. The model is fit via...... analytically and in simulations. We apply this approach to meta-analysis test statistics from two large GWAS, one for Crohn’s disease (CD) and the other for schizophrenia (SZ). A scale mixture of two normals distribution provides an excellent fit to the SZ nonparametric replication effect size estimates. While...... minimizing discrepancies between the parametric mixture model and resampling-based nonparametric estimates of replication effect sizes and variances. We describe in detail the implications of this model for estimation of the non-null proportion, the probability of replication in de novo samples, the local...

Medicinal Flowers. XXXII. Structures of oleanane-type triterpene saponins, perennisosides VIII, IX, X, XI, and XII, from the flowers of Bellis perennis.

Science.gov (United States)

Morikawa, Toshio; Li, Xuezheng; Nishida, Eriko; Nakamura, Seikou; Ninomiya, Kiyofumi; Matsuda, Hisashi; Hamao, Makoto; Muraoka, Osamu; Hayakawa, Takao; Yoshikawa, Masayuki

2011-01-01

Five new triterpene saponins perennisosides VIII (1), IX (2), X (3), XI (4), and XII (5) were isolated from the MeOH-eluated fraction of the methanolic extract from the flowers of Bellis perennis. The MeOH-eluted fraction of the methanolic extract from the flowers of B. perennis was found to inhibit gastric emptying in olive oil-loaded mice at a dose of 200 mg/kg, per os (p.o.). The stereostructures of 1-5 were elucidated on the basis of chemical and spectroscopic evidence.

Targeted mutagenesis using zinc-finger nucleases in perennial fruit trees.

Science.gov (United States)

Peer, Reut; Rivlin, Gil; Golobovitch, Sara; Lapidot, Moshe; Gal-On, Amit; Vainstein, Alexander; Tzfira, Tzvi; Flaishman, Moshe A

2015-04-01

Targeting a gene in apple or fig with ZFN, introduced by transient or stable transformation, should allow genome editing with high precision to advance basic science and breeding programs. Genome editing is a powerful tool for precise gene manipulation in any organism; it has recently been shown to be of great value for annual plants. Classical breeding strategies using conventional cross-breeding and induced mutations have played an important role in the development of new cultivars in fruit trees. However, fruit-tree breeding is a lengthy process with many limitations. Efficient and widely applied methods for targeted modification of fruit-tree genomes are not yet available. In this study, transgenic apple and fig lines carrying a zinc-finger nuclease (ZFNs) under the control of a heat-shock promoter were developed. Editing of a mutated uidA gene, following expression of the ZFN genes by heat shock, was confirmed by GUS staining and PCR product sequencing. Finally, whole plants with a repaired uidA gene due to deletion of a stop codon were regenerated. The ZFN-mediated gene modifications were stable and passed onto regenerants from ZFN-treated tissue cultures. This is the first demonstration of efficient and precise genome editing, using ZFN at a specific genomic locus, in two different perennial fruit trees-apple and fig. We conclude that targeting a gene in apple or fig with a ZFN introduced by transient or stable transformation should allow knockout of a gene of interest. Using this technology for genome editing allows for marker gene-independent and antibiotic selection-free genome engineering with high precision in fruit trees to advance basic science as well as nontransgenic breeding programs.

On the ecological genetics of the clonal perennial Agrostis stolonifera

NARCIS (Netherlands)

Kik, Christoffel

1987-01-01

There have to date been few studies specifically addressed to the evolution of clonal organisms. The present study attempts to fill this gap and aims to analyse the distribution pattern of a clonal plant species, using the wide-spread grass Agrostis stolonifera L.(Creeping Bent) as a model species.

An arbuscular mycorrhizal fungus and Epichloë festucae var. lolii reduce Bipolaris sorokiniana disease incidence and improve perennial ryegrass growth.

Science.gov (United States)

Li, Fang; Guo, Yan'e; Christensen, Michael J; Gao, Ping; Li, Yanzhong; Duan, Tingyu

2018-02-01

Leaf spot of perennial ryegrass (Lolium perenne) caused by Bipolaris sorokiniana is an important disease in temperate regions of the world. We designed this experiment to test for the combined effects of the arbuscular mycorrhizal (AM) fungus Claroideoglomus etunicatum and the grass endophyte fungus Epichloë festucae var. lolii on growth and disease occurrence in perennial ryegrass. The results show that C. etunicatum increased plant P uptake and total dry weight and that this beneficial effect was slightly enhanced when in association with the grass endophyte. The presence in plants of both the endophyte and B. sorokiniana decreased AM fungal colonization. Plants inoculated with B. sorokiniana showed the typical leaf spot symptoms 2 weeks after inoculation and the lowest disease incidence was with plants that were host to both C. etunicatum and E. festucae var. lolii. Plants with these two fungi had much higher activity of peroxidases (POD), superoxide dismutase (SOD) and catalase (CAT) and lower values of malondialdehyde (MDA) and hydrogen peroxide (H 2 O 2 ). The AM fungus C. etunicatum and the grass endophyte fungus E. festucae var. lolii have the potential to promote perennial ryegrass growth and resistance to B. sorokiniana leaf spot.

Does a decade of elevated [CO2] affect a desert perennial plant community?

Science.gov (United States)

Newingham, Beth A; Vanier, Cheryl H; Kelly, Lauren J; Charlet, Therese N; Smith, Stanley D

2014-01-01

Understanding the effects of elevated [CO2 ] on plant community structure is crucial to predicting ecosystem responses to global change. Early predictions suggested that productivity in deserts would increase via enhanced water-use efficiency under elevated [CO2], but the response of intact arid plant communities to elevated [CO2 ] is largely unknown. We measured changes in perennial plant community characteristics (cover, species richness and diversity) after 10 yr of elevated [CO2] exposure in an intact Mojave Desert community at the Nevada Desert Free-Air CO2 Enrichment (FACE) Facility. Contrary to expectations, total cover, species richness, and diversity were not affected by elevated [CO2]. Over the course of the experiment, elevated [CO2] had no effect on changes in cover of the evergreen C3 shrub, Larrea tridentata; alleviated decreases in cover of the C4 bunchgrass, Pleuraphis rigida; and slightly reduced the cover of C3 drought-deciduous shrubs. Thus, we generally found no effect of elevated [CO2] on plant communities in this arid ecosystem. Extended drought, slow plant growth rates, and highly episodic germination and recruitment of new individuals explain the lack of strong perennial plant community shifts after a decade of elevated [CO2]. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Malaria transmission in Tripura: Disease distribution & determinants.

Science.gov (United States)

Dev, Vas; Adak, Tridibes; Singh, Om P; Nanda, Nutan; Baidya, Bimal K

2015-12-01

Malaria is a major public health problem in Tripura and focal disease outbreaks are of frequent occurrence. The state is co-endemic for both Plasmodium falciparum and P. vivax and transmission is perennial and persistent. The present study was aimed to review data on disease distribution to prioritize high-risk districts, and to study seasonal prevalence of disease vectors and their bionomical characteristics to help formulate vector species-specific interventions for malaria control. Data on malaria morbidity in the State were reviewed retrospectively (2008-2012) for understanding disease distribution and transmission dynamics. Cross-sectional mass blood surveys were conducted in malaria endemic villages of South Tripura district to ascertain the prevalence of malaria and proportions of parasite species. Mosquito collections were made in human dwellings of malaria endemic villages aiming at vector incrimination and to study relative abundance, resting and feeding preferences, and their present susceptibility status to DDT. The study showed that malaria was widely prevalent and P. falciparum was the predominant infection (>90%), the remaining were P. vivax cases. The disease distribution, however, was uneven with large concentration of cases in districts of South Tripura and Dhalai coinciding with vast forest cover and tribal populations. Both Anopheles minimus s.s. and An. baimaii were recorded to be prevalent and observed to be highly anthropophagic and susceptible to DDT. Of these, An. minimus was incriminated (sporozoite infection rate 4.92%), and its bionomical characteristics revealed this species to be largely indoor resting and endophagic. For effective control of malaria in the state, it is recommended that diseases surveillance should be robust, and vector control interventions including DDT spray coverage, mass distribution of insecticide-treated nets/ long-lasting insecticidal nets should be intensified prioritizing population groups most at risk to

Effects of Seasonal and Perennial Grazing on Soil Fauna Community and Microbial Biomass Carbon in the Subalpine Meadows of Yunnan, Southwest China

Institute of Scientific and Technical Information of China (English)

LIU Shengjie; YANG Xiaodong; Anthony R.IVES; FENG Zhili; SHA Liqing

2017-01-01

Grazing and over-grazing may drive changes in the diversity and functioning of below-ground meadow ecosystems.A field soil survey was conducted to compare microbial biomass carbon (Cmin) and soil fauna communities in the two main grassland management systems in subalpine regions of Yunnan Province,China:perennial grazing currently practiced due to increasing herd sizes and traditional seasonal grazing.A three-year exclosure experiment was then conducted to further compare the effects of different grazing practices,including treatments of no mowing,perennial grazing (NM + G),mowing followed by seasonal grazing (M + G),mowing and no grazing (M + NG),and no mowing or grazing (NM + NG).The comparative survey result revealed that Cmin and total density of soil fauna were significantly lower at a perennially grazed site than at a seasonally grazed site.The experiment results showed that in comparison to non-grazing treatments (M + NG and NM + NG),grazing (NM + G and M + G) reduced total fauna density (by 150 individuals m-2) and the number of taxonomic groups present (by 0.32 taxa m-2).Mowing decreased Cmin (by 0.31 mg g-1).Furthermore,the NM + G treatment (perennial grazing) had the lowest density of Collembola (16.24 individuals m-2),one of the two most common taxonomic groups,although other taxonomic groups responded differently to the treatments.Treatment effects on soil fauna were consistent with those on above-ground grasses,in which C:N ratios were greatly reduced by grazing,with this effect being the greatest for the NM + G treatment.In contrast,different grazing treatments had little effect on C:N ratio of soil.Furthermore,the traditional grazing method (mowing followed by seasonal grazing) may have less severe effects on some taxonomic groups than perennial grazing.Therefore,an appropriate management should aim to protect soil fauna and microbes in this area from over-grazing and against further degradation.

Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.

Directory of Open Access Journals (Sweden)

Cecilia M Lindgren

2009-06-01

Full Text Available To identify genetic loci influencing central obesity and fat distribution, we performed a meta-analysis of 16 genome-wide association studies (GWAS, N = 38,580 informative for adult waist circumference (WC and waist-hip ratio (WHR. We selected 26 SNPs for follow-up, for which the evidence of association with measures of central adiposity (WC and/or WHR was strong and disproportionate to that for overall adiposity or height. Follow-up studies in a maximum of 70,689 individuals identified two loci strongly associated with measures of central adiposity; these map near TFAP2B (WC, P = 1.9x10(-11 and MSRA (WC, P = 8.9x10(-9. A third locus, near LYPLAL1, was associated with WHR in women only (P = 2.6x10(-8. The variants near TFAP2B appear to influence central adiposity through an effect on overall obesity/fat-mass, whereas LYPLAL1 displays a strong female-only association with fat distribution. By focusing on anthropometric measures of central obesity and fat distribution, we have identified three loci implicated in the regulation of human adiposity.

Defining perennial, intermittent and ephemeral channels in eastern Kentucky: application to forestry best management practices

Science.gov (United States)

J. R. Svec; R. K. Kolka; J. W. Stringer

2003-01-01

In Kentucky stream classification is used to determine which forestry best management practice (BMP) to apply in riparian zones. Kentucky defines stream classes as follows (Stringer and others 1998): a) perennial streams that hold water throughout the year, b) intermittent streams that hold water during wet portions of the year, and c) ephemeral channels that hold...

Sheep numbers required for dry matter digestibility evaluations when fed fresh perennial ryegrass or forage rape.

Science.gov (United States)

Sun, Xuezhao; Krijgsman, Linda; Waghorn, Garry C; Kjestrup, Holly; Koolaard, John; Pacheco, David

2017-03-01

Research trials with fresh forages often require accurate and precise measurement of digestibility and variation in digestion between individuals, and the duration of measurement periods needs to be established to ensure reliable data are obtained. The variation is likely to be greater when freshly harvested feeds are given, such as perennial ryegrass ( Lolium perenne L.) and forage rape ( Brassica napus L.), because the nutrient composition changes over time and in response to weather conditions. Daily feed intake and faeces output data from a digestibility trial with these forages were used to calculate the effects of differing lengths of the measurement period and differing numbers of sheep, on the precision of digestibility, with a view towards development of a protocol. Sixteen lambs aged 8 months and weighing 33 kg at the commencement of the trial were fed either perennial ryegrass or forage rape (8/treatment group) over 2 periods with 35 d between measurements. They had been acclimatised to the diets, having grazed them for 42 d prior to 11 days of indoor measurements. The sheep numbers required for a digestibility trial with different combinations of acclimatisation and measurement period lengths were subsequently calculated for 3 levels of imposed precision upon the estimate of mean dry matter (DM) digestibility. It is recommended that if the standard error of the mean for digestibility is equal to or higher than 5 g/kg DM, and if sheep are already used to a fresh perennial ryegrass or forage rape diet, then a minimum of 6 animals are needed and 4 acclimatisation days being fed individually in metabolic crates followed by 7 days of measurement.

Comparative mapping of the wild perennial Glycine latifolia and soybean (G. max reveals extensive chromosome rearrangements in the genus Glycine.

Directory of Open Access Journals (Sweden)

Sungyul Chang

Full Text Available Soybean (Glycine max L. Mer., like many cultivated crops, has a relatively narrow genetic base and lacks diversity for some economically important traits. Glycine latifolia (Benth. Newell & Hymowitz, one of the 26 perennial wild Glycine species related to soybean in the subgenus Glycine Willd., shows high levels of resistance to multiple soybean pathogens and pests including Alfalfa mosaic virus, Heterodera glycines Ichinohe and Sclerotinia sclerotiorum (Lib. de Bary. However, limited information is available on the genomes of these perennial Glycine species. To generate molecular resources for gene mapping and identification, high-density linkage maps were constructed for G. latifolia using single nucleotide polymorphism (SNP markers generated by genotyping by sequencing and evaluated in an F2 population and confirmed in an F5 population. In each population, greater than 2,300 SNP markers were selected for analysis and segregated to form 20 large linkage groups. Marker orders were similar in the F2 and F5 populations. The relationships between G. latifolia linkage groups and G. max and common bean (Phaseolus vulgaris L. chromosomes were examined by aligning SNP-containing sequences from G. latifolia to the genome sequences of G. max and P. vulgaris. Twelve of the 20 G. latifolia linkage groups were nearly collinear with G. max chromosomes. The remaining eight G. latifolia linkage groups appeared to be products of multiple interchromosomal translocations relative to G. max. Large syntenic blocks also were observed between G. latifolia and P. vulgaris. These experiments are the first to compare genome organizations among annual and perennial Glycine species and common bean. The development of molecular resources for species closely related to G. max provides information into the evolution of genomes within the genus Glycine and tools to identify genes within perennial wild relatives of cultivated soybean that could be beneficial to soybean

Distributed Large Data-Object Environments: End-to-End Performance Analysis of High Speed Distributed Storage Systems in Wide Area ATM Networks

Science.gov (United States)

Johnston, William; Tierney, Brian; Lee, Jason; Hoo, Gary; Thompson, Mary

1996-01-01

We have developed and deployed a distributed-parallel storage system (DPSS) in several high speed asynchronous transfer mode (ATM) wide area networks (WAN) testbeds to support several different types of data-intensive applications. Architecturally, the DPSS is a network striped disk array, but is fairly unique in that its implementation allows applications complete freedom to determine optimal data layout, replication and/or coding redundancy strategy, security policy, and dynamic reconfiguration. In conjunction with the DPSS, we have developed a 'top-to-bottom, end-to-end' performance monitoring and analysis methodology that has allowed us to characterize all aspects of the DPSS operating in high speed ATM networks. In particular, we have run a variety of performance monitoring experiments involving the DPSS in the MAGIC testbed, which is a large scale, high speed, ATM network and we describe our experience using the monitoring methodology to identify and correct problems that limit the performance of high speed distributed applications. Finally, the DPSS is part of an overall architecture for using high speed, WAN's for enabling the routine, location independent use of large data-objects. Since this is part of the motivation for a distributed storage system, we describe this architecture.

Omalizumab Is Equally Effective in Persistent Allergic Oral Corticosteroid-Dependent Asthma Caused by Either Seasonal or Perennial Allergens: A Pilot Study.

Science.gov (United States)

Domingo, Christian; Pomares, Xavier; Navarro, Albert; Rudi, Núria; Sogo, Ana; Dávila, Ignacio; Mirapeix, Rosa M

2017-02-28

Omalizumab is marketed for chronic severe asthma patients who are allergic to perennial allergens. Our purpose was to investigate whether omalizumab is also effective in persistent severe asthma due to seasonal allergens. Thirty patients with oral corticosteroid-dependent asthma were treated with Omalizumab according to the dosing table. For each patient with asthma due to seasonal allergens, we recruited the next two consecutive patients with asthma due to perennial allergens. The dose of oral methyl prednisolone was tapered at a rate of 2 mg every two weeks after the start of treatment with omalizumab depending on tolerance. At each monthly visit, a forced spirometry and fractional exhaled nitric oxide (FeNO) measurement were performed and the accumulated monthly methyl prednisolone dose was calculated. At entry, there were no differences between groups in terms of gender, body mass index or obesity, year exacerbation rate, monthly dose of methyl-prednisolone (MP), FeNO and blood immunoglobuline E (IgE) MP, FeNO and IgE values, or spirometry (perennial: FVC: 76%; FEV₁: 62%; seasonal: FVC: 79%; FEV₁: 70%). The follow-up lasted 76 weeks. One patient in each group was considered a non-responder. Spirometry did not worsen in either group. There was a significant intragroup reduction in annual exacerbation rate and methyl prednisolone consumption but no differences were detected in the intergroup comparison. Omalizumab offered the same clinical benefits in the two cohorts regardless of whether the asthma was caused by a seasonal or a perennial allergen. These results strongly suggest that allergens are the trigger in chronic asthma but that it is the persistent exposure to IgE that causes the chronicity.

Omalizumab Is Equally Effective in Persistent Allergic Oral Corticosteroid-Dependent Asthma Caused by Either Seasonal or Perennial Allergens: A Pilot Study

Directory of Open Access Journals (Sweden)

Christian Domingo

2017-02-01

Full Text Available Omalizumab is marketed for chronic severe asthma patients who are allergic to perennial allergens. Our purpose was to investigate whether omalizumab is also effective in persistent severe asthma due to seasonal allergens. Thirty patients with oral corticosteroid-dependent asthma were treated with Omalizumab according to the dosing table. For each patient with asthma due to seasonal allergens, we recruited the next two consecutive patients with asthma due to perennial allergens. The dose of oral methyl prednisolone (MP was tapered at a rate of 2 mg every two weeks after the start of treatment with omalizumab depending on tolerance. At each monthly visit, a forced spirometry and fractional exhaled nitric oxide (FeNO measurement were performed and the accumulated monthly MP dose was calculated. At entry, there were no differences between groups in terms of gender, body mass index or obesity, year exacerbation rate, monthly dose of MP, FeNO and blood immunoglobuline E (IgE values, or spirometry (perennial: FVC: 76%; FEV1: 62%; seasonal: FVC: 79%; FEV1: 70%. The follow-up lasted 76 weeks. One patient in each group was considered a non-responder. Spirometry did not worsen in either group. There was a significant intragroup reduction in annual exacerbation rate and MP consumption but no differences were detected in the intergroup comparison. Omalizumab offered the same clinical benefits in the two cohorts regardless of whether the asthma was caused by a seasonal or a perennial allergen. These results strongly suggest that allergens are the trigger in chronic asthma but that it is the persistent exposure to IgE that causes the chronicity.

Seismic Evidence of A Widely Distributed West Napa Fault Zone, Hendry Winery, Napa, California

Science.gov (United States)

Goldman, M.; Catchings, R.; Chan, J. H.; Criley, C.

2015-12-01

Following the 24 August 2014 Mw 6.0 South Napa earthquake, surface rupture was mapped along the West Napa Fault Zone (WNFZ) for a distance of ~ 14 km and locally within zones up to ~ 2 km wide. Near the northern end of the surface rupture, however, several strands coalesced to form a narrow, ~100-m-wide zone of surface rupture. To determine the location, width, and shallow (upper few hundred meters) geometry of the fault zone, we acquired an active-source seismic survey across the northern surface rupture in February 2015. We acquired both P- and S-wave data, from which we developed reflection images and tomographic images of Vp, Vs, Vp/Vs, and Poisson's ratio of the upper 100 m. We also used small explosive charges within surface ruptures located ~600 m north of our seismic array to record fault-zone guided waves. Our data indicate that at the latitude of the Hendry Winery, the WNFZ is characterized by at least five fault traces that are spaced 60 to 200 m apart. Zones of low-Vs, low-Vp/Vs, and disrupted reflectors highlight the fault traces on the tomography and reflection images. On peak-ground-velocity (PGV) plots, the most pronounced high-amplitude guided-wave seismic energy coincides precisely with the mapped surface ruptures, and the guided waves also show discrete high PGV zones associated with unmapped fault traces east of the surface ruptures. Although the surface ruptures of the WNFZ were observed only over a 100-m-wide zone at the Hendry Winery, our data indicate that the fault zone is at least 400 m wide, which is probably a minimum width given the 400-m length of our seismic profile. Slip on the WNFZ is generally considered to be low relative to most other Bay Area faults, but we suggest that the West Napa Fault is a zone of widely distributed shear, and to fully account for the total slip on the WNFZ, slip on all traces of this wide fault zone must be considered.

Molecular mechanisms responsive to dehydration may impact the invasiveness of perennial weeds under global climate change

Science.gov (United States)

Leafy spurge is an invasive perennial weed in the great plains of the US and Canada. The ability of this herbaceous weed to regenerate new shoot growth from an abundance of crown and root buds after severe abiotic stress is critical for survival. Due to its adaptable and aggressive nature, global cl...

Perennial filter strips reduce nitrate levels in soil and shallow groundwater after grassland-to-cropland conversion

Science.gov (United States)

Xiaobo Zhou; Matthew J. Helmers; Heidi Asbjornsen; Randy Kolka; Mark D. Tomer

2010-01-01

Many croplands planted to perennial grasses under the Conservation Reserve Program are being returned to crop production, and with potential consequences for water quality. The objective of this study was to quantify the impact of grassland-to-cropland conversion on nitrate-nitrogen (NO3-N) concentrations in soil and shallow groundwater and to...

Theoretical implications for the estimation of dinitrogen fixation by large perennial plant species using isotope dilution

Science.gov (United States)

Dwight D. Baker; Maurice Fried; John A. Parrotta

1995-01-01

Estimation of symbiotic N2 fixation associated with large perennial plant species, especially trees, poses special problems because the process must be followed over a potentially long period of time to integrate the total amount of fixation. Estimations using isotope dilution methodology have begun to be used for trees in field studies. Because...

Comparative ecology of widely distributed pelagic fish species in the North Atlantic: Implications for modelling climate and fisheries impacts

Science.gov (United States)

Trenkel, V. M.; Huse, G.; MacKenzie, B. R.; Alvarez, P.; Arrizabalaga, H.; Castonguay, M.; Goñi, N.; Grégoire, F.; Hátún, H.; Jansen, T.; Jacobsen, J. A.; Lehodey, P.; Lutcavage, M.; Mariani, P.; Melvin, G. D.; Neilson, J. D.; Nøttestad, L.; Óskarsson, G. J.; Payne, M. R.; Richardson, D. E.; Senina, I.; Speirs, D. C.

2014-12-01

This paper reviews the current knowledge on the ecology of widely distributed pelagic fish stocks in the North Atlantic basin with emphasis on their role in the food web and the factors determining their relationship with the environment. We consider herring (Clupea harengus), mackerel (Scomber scombrus), capelin (Mallotus villosus), blue whiting (Micromesistius poutassou), and horse mackerel (Trachurus trachurus), which have distributions extending beyond the continental shelf and predominantly occur on both sides of the North Atlantic. We also include albacore (Thunnus alalunga), bluefin tuna (Thunnus thynnus), swordfish (Xiphias gladius), and blue marlin (Makaira nigricans), which, by contrast, show large-scale migrations at the basin scale. We focus on the links between life history processes and the environment, horizontal and vertical distribution, spatial structure and trophic role. Many of these species carry out extensive migrations from spawning grounds to nursery and feeding areas. Large oceanographic features such as the North Atlantic subpolar gyre play an important role in determining spatial distributions and driving variations in stock size. Given the large biomasses of especially the smaller species considered here, these stocks can exert significant top-down pressures on the food web and are important in supporting higher trophic levels. The review reveals commonalities and differences between the ecology of widely distributed pelagic fish in the NE and NW Atlantic basins, identifies knowledge gaps and modelling needs that the EURO-BASIN project attempts to address.

Ecosystem-service tradeoffs associated with switching from annual to perennial energy crops in riparian zones of the US Midwest.

Directory of Open Access Journals (Sweden)

Timothy D Meehan

Full Text Available Integration of energy crops into agricultural landscapes could promote sustainability if they are placed in ways that foster multiple ecosystem services and mitigate ecosystem disservices from existing crops. We conducted a modeling study to investigate how replacing annual energy crops with perennial energy crops along Wisconsin waterways could affect a variety of provisioning and regulating ecosystem services. We found that a switch from continuous corn production to perennial-grass production decreased annual income provisioning by 75%, although it increased annual energy provisioning by 33%, decreased annual phosphorous loading to surface water by 29%, increased below-ground carbon sequestration by 30%, decreased annual nitrous oxide emissions by 84%, increased an index of pollinator abundance by an average of 11%, and increased an index of biocontrol potential by an average of 6%. We expressed the tradeoffs between income provisioning and other ecosystem services as benefit-cost ratios. Benefit-cost ratios averaged 12.06 GJ of additional net energy, 0.84 kg of avoided phosphorus pollution, 18.97 Mg of sequestered carbon, and 1.99 kg of avoided nitrous oxide emissions for every $1,000 reduction in income. These ratios varied spatially, from 2- to 70-fold depending on the ecosystem service. Benefit-cost ratios for different ecosystem services were generally correlated within watersheds, suggesting the presence of hotspots--watersheds where increases in multiple ecosystem services would come at lower-than-average opportunity costs. When assessing the monetary value of ecosystem services relative to existing conservation programs and environmental markets, the overall value of enhanced services associated with adoption of perennial energy crops was far lower than the opportunity cost. However, when we monitized services using estimates for the social costs of pollution, the value of enhanced services far exceeded the opportunity cost. This

Inheritance patterns of the response to in vitro doubled haploid induction in perennial ryegrass (Lolium perenne L.)

Czech Academy of Sciences Publication Activity Database

Begheyn, R. F.; Roulund, N.; Vangsgaard, K.; Kopecký, David; Studer, B.

2017-01-01

Roč. 130, č. 3 (2017), s. 667-679 ISSN 0167-6857 Institutional support: RVO:61389030 Keywords : Androgenesis * Androgenic capacity * Anther culture * Doubled haploid (DH) * Perennial ryegrass (Lolium perenne L.) Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Plant sciences, botany Impact factor: 2.002, year: 2016

Carbon Sequestration by Perennial Energy Crops: Is the Jury Still Out?

Science.gov (United States)

Agostini, Francesco; Gregory, Andrew S; Richter, Goetz M

Soil organic carbon (SOC) changes associated with land conversion to energy crops are central to the debate on bioenergy and their potential carbon neutrality. Here, the experimental evidence on SOC under perennial energy crops (PECs) is synthesised to parameterise a whole systems model and to identify uncertainties and knowledge gaps determining PECs being a sink or source of greenhouse gas (GHG). For Miscanthus and willow ( Salix spp.) and their analogues (switchgrass, poplar), we examine carbon (C) allocation to above- and belowground residue inputs, turnover rates and retention in the soil. A meta-analysis showed that studies on dry matter partitioning and C inputs to soils are plentiful, whilst data on turnover are rare and rely on few isotopic C tracer studies. Comprehensive studies on SOC dynamics and GHG emissions under PECs are limited and subsoil processes and C losses through leaching remain unknown. Data showed dynamic changes of gross C inputs and SOC stocks depending on stand age. C inputs and turnover can now be specifically parameterised in whole PEC system models, whilst dependencies on soil texture, moisture and temperature remain empirical. In conclusion, the annual net SOC storage change exceeds the minimum mitigation requirement (0.25 Mg C ha -1 year -1 ) under herbaceous and woody perennials by far (1.14 to 1.88 and 0.63 to 0.72 Mg C ha -1 year -1 , respectively). However, long-term time series of field data are needed to verify sustainable SOC enrichment, as the physical and chemical stabilities of SOC pools remain uncertain, although they are essential in defining the sustainability of C sequestration (half-life >25 years).

Energy vectors - Perennial guidebook for energy choices; Vecteurs d'energie - Guide perenne pour les choix energetiques

Energy Technology Data Exchange (ETDEWEB)

Caseau, P.; Ruelle, G.; Bacher, P.; Bamberger, Y.; Castillon, P.; Decomps, B.; Dhers, J.; Jarry, B.; Lefaudeux, F.; Mudry, F.; Saunier, B. [Academie des Technologies, Grand Palais des Champs Elysees - Porte C - Avenue Franklin D. Roosevelt - 75008 Paris (France); Careme, F.; Rogeaux, B. [EdF, 22-30, avenue de Wagram 75008 Paris (France); Choux, G. [Total, 2, place Jean Millier La Defense 6, 92400 Courbevoie (France); Morel, H. [CNRS, 3 Rue Michel-Ange, 75016 Paris (France)

2011-11-17

Energy vector means the distributed form of energy which is paid by the end-user: the automotive fuel at the gas station, the electricity at the plug. Vectors are characterized by two essential properties: they are structured in networks allowing a large access to users and a geographical and time adjustment of the demand thanks to transport and storage facilities. The link they create between sources and needs allows to introduce both upstream and downstream competitions (what usage is the most profitable? What source or vector is the most economical?). These two properties of vectors allow to use the economical and ecological competitions to help the decision-makers in the choice of the energy mix. This book explores these competitions with a double compass: ecological (greenhouse gases abatement) and economical (the less cost). The parametrical structure of the study allows to use it according to various hypotheses concerning the future evolution of energy source and CO{sub 2} prices. Therefore, it represents a perennial guidebook of energy choices. (J.S.)

Seasonal variations of cadmium and zinc in Arrhenatherum elatius, a perennial grass species from highly contaminated soils

International Nuclear Information System (INIS)

Deram, Annabelle; Denayer, Franck-Olivier; Petit, Daniel; Van Haluwyn, Chantal

2006-01-01

There is interest in studying bioaccumulation in plants because they form the base of the food chain as well as their potential use in phytoextraction. From this viewpoint, our study deals with the seasonal variation, from January to July, of Cd and Zn bioaccumulation in three metallicolous populations of Arrhenatherum elatius, a perennial grass with a high biomass production. In heavily polluted soils, while Zn bioaccumulation is weak, A. elatius accumulates more Cd than reported gramineous plants, with concentration of up to 100 μg g -1 . Our results also showed seasonal variations of bioaccumulation, underlying the necessity for in situ studies to specify the date of sampling and also the phenology of the collected plant sample. In our experimental conditions, accumulation is lower in June, leading us to the hypothesis of restriction in heavy metals translocation from roots to aerial parts during seed production. - Cd and Zn bioaccumulation varies seasonally in a perennial grass

Seasonal variations of cadmium and zinc in Arrhenatherum elatius, a perennial grass species from highly contaminated soils

Energy Technology Data Exchange (ETDEWEB)

Deram, Annabelle [Institut Lillois d' Ingenierie de la Sante, Universite Droit et Sante de Lille, EA 2690, 42 rue Ambroise Pare, 59120 Loos (France)]. E-mail: aderam@ilis.univ-lille2.fr; Denayer, Franck-Olivier [Institut Lillois d' Ingenierie de la Sante, Universite Droit et Sante de Lille, EA 2690, 42 rue Ambroise Pare, 59120 Loos (France); Petit, Daniel [Laboratoire de Genetique et Evolution des Populations Vegetales, UPRESA-CNRS 8016, Bat SN2, Universite des Sciences et Techniques de Lille, 59655 Villeneuve d' Ascq, F59655 France (France); Van Haluwyn, Chantal [Faculte des Sciences Pharmaceutiques et Biologiques, Departement de Botanique, Universite Droit et Sante de Lille, EA 2690, B.P. 83, 59006 Lille Cedex (France)

2006-03-15

There is interest in studying bioaccumulation in plants because they form the base of the food chain as well as their potential use in phytoextraction. From this viewpoint, our study deals with the seasonal variation, from January to July, of Cd and Zn bioaccumulation in three metallicolous populations of Arrhenatherum elatius, a perennial grass with a high biomass production. In heavily polluted soils, while Zn bioaccumulation is weak, A. elatius accumulates more Cd than reported gramineous plants, with concentration of up to 100 {mu}g g{sup -1}. Our results also showed seasonal variations of bioaccumulation, underlying the necessity for in situ studies to specify the date of sampling and also the phenology of the collected plant sample. In our experimental conditions, accumulation is lower in June, leading us to the hypothesis of restriction in heavy metals translocation from roots to aerial parts during seed production. - Cd and Zn bioaccumulation varies seasonally in a perennial grass.

Long-term nitrous oxide fluxes in annual and perennial agricultural and unmanaged ecosystems in the upper Midwest USA.

Science.gov (United States)

Gelfand, Ilya; Shcherbak, Iurii; Millar, Neville; Kravchenko, Alexandra N; Robertson, G Philip

2016-11-01

Differences in soil nitrous oxide (N 2 O) fluxes among ecosystems are often difficult to evaluate and predict due to high spatial and temporal variabilities and few direct experimental comparisons. For 20 years, we measured N 2 O fluxes in 11 ecosystems in southwest Michigan USA: four annual grain crops (corn-soybean-wheat rotations) managed with conventional, no-till, reduced input, or biologically based/organic inputs; three perennial crops (alfalfa, poplar, and conifers); and four unmanaged ecosystems of different successional age including mature forest. Average N 2 O emissions were higher from annual grain and N-fixing cropping systems than from nonleguminous perennial cropping systems and were low across unmanaged ecosystems. Among annual cropping systems full-rotation fluxes were indistinguishable from one another but rotation phase mattered. For example, those systems with cover crops and reduced fertilizer N emitted more N 2 O during the corn and soybean phases, but during the wheat phase fluxes were ~40% lower. Likewise, no-till did not differ from conventional tillage over the entire rotation but reduced emissions ~20% in the wheat phase and increased emissions 30-80% in the corn and soybean phases. Greenhouse gas intensity for the annual crops (flux per unit yield) was lowest for soybeans produced under conventional management, while for the 11 other crop × management combinations intensities were similar to one another. Among the fertilized systems, emissions ranged from 0.30 to 1.33 kg N 2 O-N ha -1  yr -1 and were best predicted by IPCC Tier 1 and ΔEF emission factor approaches. Annual cumulative fluxes from perennial systems were best explained by soil NO3- pools (r 2  = 0.72) but not so for annual crops, where management differences overrode simple correlations. Daily soil N 2 O emissions were poorly predicted by any measured variables. Overall, long-term measurements reveal lower fluxes in nonlegume perennial vegetation and, for

A comparative study of molecular and morphological methods of describing relationships between perennial ryegrass (Lolium perenne L.) varieties

NARCIS (Netherlands)

Roldán-Ruiz, I.; Eeuwijk, van F.A.; Gilliland, T.J.; Dubreuil, P.; Dillmann, C.; Lallemand, J.; Loose, De M.; Baril, C.P.

2001-01-01

A sample set of registered perennial ryegrass varieties was used to compare how morphological characterisation and AFLP® (AFLP® is a registered trademark of Keygene N.V.) and STS molecular markers described variety relationships. All the varieties were confirmed as morphologically distinct, and both

Sea surface temperature data from a world wide distribution from 01 January 1971 to 31 December 2000 (NODC Accession 0000712)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Sea surface temperature data were collected in a world wide distribution from January 1, 1971 to December 31, 2000. Data were submitted by Japan Meteorological...

Using the Model Perennial Grass Brachypodium sylvaticum to Engineer Resistance to Multiple Abiotic Stresses

Energy Technology Data Exchange (ETDEWEB)

Gordon, Sean; Reguera, Maria; Sade, Nir; Cartwright, Amy; Tobias, Christian; Thilmony, Roger; Blumwald, Eduardo; Vogel, John

2015-03-20

We are using the perennial model grass Brachypodium sylvaticum to identify combinations of transgenes that enhance tolerance to multiple, simultaneous abiotic stresses. The most successful transgene combinations will ultimately be used to create improved switchgrass (Panicum virgatum L.) cultivars. To further develop B. sylvaticum as a perennial model grass, and facilitate our planned transcriptional profiling, we are sequencing and annotating the genome. We have generated ~40x genome coverage using PacBio sequencing of the largest possible size selected libraries (18, 22, 25 kb). Our initial assembly using only long-read sequence contained 320 Mb of sequence with an N50 contig length of 315 kb and an N95 contig length of 40 kb. This assembly consists of 2,430 contigs, the largest of which was 1.6 Mb. The estimated genome size based on c-values is 340 Mb indicating that about 20 Mb of presumably repetitive DNA remains yet unassembled. Significantly, this assembly is far superior to an assembly created from paired-end short-read sequence, ~100x genome coverage. The short-read-only assembly contained only 226 Mb of sequence in 19k contigs. To aid the assembly of the scaffolds into chromosome-scale assemblies we produced an F2 mapping population and have genotyped 480 individuals using a genotype by sequence approach. One of the reasons for using B. sylvaticum as a model system is to determine if the transgenes adversely affect perenniality and winter hardiness. Toward this goal, we examined the freezing tolerance of wild type B. sylvaticum lines to determine the optimal conditions for testing the freezing tolerance of the transgenics. A survey of seven accessions noted significant natural variation in freezing tolerance. Seedling or adult Ain-1 plants, the line used for transformation, survived an 8 hour challenge down to -6 oC and 50% survived a challenge down to -9 oC. Thus, we will be able to easily determine if the transgenes compromise freezing tolerance. In the

Established native perennial grasses out-compete an invasive annual grass regardless of soil water and nutrient availability

Science.gov (United States)

Christopher M. McGlone; Carolyn Hull Sieg; Thomas E. Kolb; Ty Nietupsky

2012-01-01

Competition and resource availability influence invasions into native perennial grasslands by nonnative annual grasses such as Bromus tectorum. In two greenhouse experiments we examined the influence of competition, water availability, and elevated nitrogen (N) and phosphorus (P) availability on growth and reproduction of the invasive annual grass B. tectorum and two...

Photoperiodic regulation of flowering in perennial ryegrass involving a CONSTANS-like homolog

DEFF Research Database (Denmark)

Martin, J.; Storgaard, M.; Andersen, C.H.

2004-01-01

Photoperiod and vernalization are the two key environmental factors of the. oral induction of perennial ryegrass (Lolium perenne L.). Transition from vegetative to reproductive growth will only occur after an extended vernalization period, followed by an increase in day length and temperature. Here...... we report on the isolation and characterization of a L. perenne gene (LpCO) that is homologous to CONSTANS, and which is tightly coupled to the. oral inductive long day signal. Like other monocot CO-like proteins, the LpCO contains a zinc finger domain with a non-conserved B-Box2. Although the B-Box2...

Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium.

Directory of Open Access Journals (Sweden)

Humira Sonah

Full Text Available Plant genomes are complex and contain large amounts of repetitive DNA including microsatellites that are distributed across entire genomes. Whole genome sequences of several monocot and dicot plants that are available in the public domain provide an opportunity to study the origin, distribution and evolution of microsatellites, and also facilitate the development of new molecular markers. In the present investigation, a genome-wide analysis of microsatellite distribution in monocots (Brachypodium, sorghum and rice and dicots (Arabidopsis, Medicago and Populus was performed. A total of 797,863 simple sequence repeats (SSRs were identified in the whole genome sequences of six plant species. Characterization of these SSRs revealed that mono-nucleotide repeats were the most abundant repeats, and that the frequency of repeats decreased with increase in motif length both in monocots and dicots. However, the frequency of SSRs was higher in dicots than in monocots both for nuclear and chloroplast genomes. Interestingly, GC-rich repeats were the dominant repeats only in monocots, with the majority of them being present in the coding region. These coding GC-rich repeats were found to be involved in different biological processes, predominantly binding activities. In addition, a set of 22,879 SSR markers that were validated by e-PCR were developed and mapped on different chromosomes in Brachypodium for the first time, with a frequency of 101 SSR markers per Mb. Experimental validation of 55 markers showed successful amplification of 80% SSR markers in 16 Brachypodium accessions. An online database 'BraMi' (Brachypodium microsatellite markers of these genome-wide SSR markers was developed and made available in the public domain. The observed differential patterns of SSR marker distribution would be useful for studying microsatellite evolution in a monocot-dicot system. SSR markers developed in this study would be helpful for genomic studies in Brachypodium

The role of changing climate in driving the shift from perennial grasses to annual succulents in a Mediterranean saltmarsh

NARCIS (Netherlands)

Strain, E.M.A.; van Belzen, J.; Comandini, P.; Wong, J.; Bouma, T.J.; Airoldi, L.

2017-01-01

Changing climate threatens the structure and function of saltmarshes, which are often severely degraded by other human perturbations. Along the Mediterranean coastline, increasing temperature and decreasing rainfall have been hypothesised to trigger habitat shifts from perennial grasses to annual

Age and distribution of an evergreen clonal shrub in the Coweeta basin: Rhododendron maximum L

Science.gov (United States)

Katherine J. Elliott; James M. Vose

2012-01-01

Rhododendron maximum L. is an evergreen, clonal shrub that forms a dominant sub-canopy layer and is a key species in southern Appalachian forests. We investigated the age and distribution of R. maximum across the Coweeta Basin, a 1626 ha watershed in western North Carolina. We selected 16 perennial, second-order streams and used a Global Positioning System to establish...

Biogeography and ecology of Cetraria aculeata, a widely distributed lichen with a bipolar distribution

Directory of Open Access Journals (Sweden)

Christian Printzen

2013-04-01

Full Text Available Ecological and historical biogeography of lichens have rarely been studied in a concerted effort, but both aspects have to be taken into consideration when explaining the distributional patterns of species. This review summarizes, partly preliminary, results from a series of studies on phylogeography, ecophysiology and symbiotic interactions of the lichen Cetraria aculeata. This species is not only widespread but also occupies a very wide ecological niche. Evidence suggests that Cetraria aculeata has evolved and diversified in the Northern Hemisphere and colonised the Southern Hemisphere from there. Genetic isolation of populations indicates the absence of ongoing long range dispersal and genetic exchange between geographically isolated populations. We observe a hitherto unrecognized genetic diversity that may indicate ecotypic differentiation and speciation processes. Mediterranean and Polar populations differ not only genetically, but also in ecophysiological properties. Ongoing common garden experiments will have to show whether genetically fixed adaptation or acclimation is responsible for these differences. The genetic structure of the photobiont is best explained by climatic differences between localities, but co-dispersal with the mycobiont plays an important role as well. Taken together, these results indicate that a photobiont switch in the past enabled C. aculeata to widen its ecological niche, with subsequent genetic isolation of populations. Photobiont switches may play a crucial role in speciation processes of lichens. A combination of ecophysiological and phylogeographic studies with experimental approaches is necessary to better understand the reaction of lichens to changing environmental conditions.

Evaluating poverty grass (Danthonia spicata L.) for use in tees, fairways, or rough areas in golf courses in the midwest

Science.gov (United States)

Nadia E. Navarrete-Tindall; Brad Fresenburg; J.W. Van Sambeek

2007-01-01

Poverty grass (Danthonia spicata L.), a native, cool-season perennial bunchgrass with wide distribution in the United States, is being evaluated for its suitability for use on golf courses. The goal is to identify practices to improve seed germination and successfully establish field plots as monocultures or with other native species to mimic natural...

Induction of salicylic acid-mediated defense response in perennial ryegrass against infection by Magnaporthe oryzae.

Science.gov (United States)

Rahman, Alamgir; Kuldau, Gretchen A; Uddin, Wakar

2014-06-01

Incorporation of plant defense activators is an innovative approach to development of an integrated strategy for the management of turfgrass diseases. The effects of salicylic acid (SA), benzothiadiazole (BTH, chemical analog of SA), jasmonic acid (JA), and ethephon (ET, an ethylene-releasing compound) on development of gray leaf spot in perennial ryegrass (Lolium perenne L.) caused by Magnaporthe oryzae were evaluated. Gray leaf spot disease incidence and severity were significantly decreased when plants were treated prior to inoculation with SA, BTH, and partially by ET but not by JA. Accumulation of endogenous SA and elevated expression of pathogenesis-related (PR)-1, PR-3.1, and PR-5 genes were associated with inoculation of plants by M. oryzae. Treatment of plants with SA enhanced expression levels of PR-3.1 and PR-5 but did not affect the PR-1 level, whereas BTH treatment enhanced relative expression levels of all three PR genes. Microscopic observations of leaves inoculated with M. oryzae revealed higher frequencies of callose deposition at the penetration sites in SA- and BTH-treated plants compared with the control plants (treated with water). These results suggest that early and higher induction of these genes by systemic resistance inducers may provide perennial ryegrass with a substantial advantage to defend against infection by M. oryzae.

Application of perennial legume green manures to improve growth and yield of organic lowland rice

Directory of Open Access Journals (Sweden)

M Winarni

2016-10-01

Full Text Available A pot experiment in green house was done to study the effect of the dosage and speciesof perennial legume green manures to the physiological traits, growth and yield of organic lowland rice (Oryza sativaL., and to obtain the optimal dosage as well.  The research was arranged in a factorial randomized block design consistedof two factors with three replications.The first factor was the species of perennial legume thatconsisted of threespecies: Turi (Sesbaniagrandiflora, Glirisidia (Gliricidiasepium, and Lamtoro (Leucaenaleucocephala and cow manure as control treatment. The second factor was the dosage of green manure thatconsisted of four levels: 5, 10, 20 and 40 t/ha.  The results showed that application ofperennial legumesinto the soil significantly improved the growth and yield of rice.  The application of  20 t Glirisidia leaves/haproduced the highest grain yield, followed by 20 t Lamtoro leaves/ha and 20 t Turi leaves/ha.  The optimal dosages of S. grandiflora, G. sepium and L. leucochepala leaves that could yield 58.03 g/hill (equivalent to14.51 t/ha, 53.67 g/hill (equivalent to 13.42 t/ha, and 49.67 g/hill (equivalent to 12.42 t/ha were 28.05, 25.46 and 26.41 t/ha, respectively.

Interannual variation in nitrous oxide emissions from perennial ryegrass/white clover grassland used for dairy production.

Science.gov (United States)

Burchill, William; Li, Dejun; Lanigan, Gary J; Williams, Micheal; Humphreys, James

2014-10-01

Nitrous oxide (N2 O) emissions are subject to intra- and interannual variation due to changes in weather and management. This creates significant uncertainties when quantifying estimates of annual N2 O emissions from grazed grasslands. Despite these uncertainties, the majority of studies are short-term in nature (Nitrous oxide emissions were measured from fertilized and grazed perennial ryegrass/white clover grassland (WC) and from perennial ryegrass plots that were not grazed and did not receive N input (GB), over 4 years from 2008 to 2012 in Ireland (52°51'N, 08°21'W). The annual N2 O-N emissions (kg ha(-1); mean ± SE) ranged from 4.4 ± 0.2 to 34.4 ± 5.5 from WC and from 1.7 ± 0.8 to 6.3 ± 1.2 from GB. Interannual variation in N2 O emissions was attributed to differences in annual rainfall, monthly (December) soil temperatures and variation in N input. Such substantial interannual variation in N2 O emissions highlights the need for long-term studies of emissions from managed pastoral systems. © 2014 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Temperature profile data from XBT casts from a World-Wide Distribution 31 March 1985 to 24 November 1990 (NODC Accession 9700191)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical data were collected from XBT casts from from a World-Wide Distribution from 31 March 1985 to 24 November 1990. Physical parameters include temperature...

Feature-Based Visual Short-Term Memory Is Widely Distributed and Hierarchically Organized.

Science.gov (United States)

Dotson, Nicholas M; Hoffman, Steven J; Goodell, Baldwin; Gray, Charles M

2018-06-15

Feature-based visual short-term memory is known to engage both sensory and association cortices. However, the extent of the participating circuit and the neural mechanisms underlying memory maintenance is still a matter of vigorous debate. To address these questions, we recorded neuronal activity from 42 cortical areas in monkeys performing a feature-based visual short-term memory task and an interleaved fixation task. We find that task-dependent differences in firing rates are widely distributed throughout the cortex, while stimulus-specific changes in firing rates are more restricted and hierarchically organized. We also show that microsaccades during the memory delay encode the stimuli held in memory and that units modulated by microsaccades are more likely to exhibit stimulus specificity, suggesting that eye movements contribute to visual short-term memory processes. These results support a framework in which most cortical areas, within a modality, contribute to mnemonic representations at timescales that increase along the cortical hierarchy. Copyright © 2018 Elsevier Inc. All rights reserved.

Density dependent interactions between VA mycorrhizal fungi and even-aged seedlings of two perennial Fabaceae species.

Science.gov (United States)

Allsopp, N; Stock, W D

1992-08-01

The interaction of density and mycorrhizal effects on the growth, mineral nutrition and size distribution of seedlings of two perennial members of the Fabaceae was investigated in pot culture. Seedlings of Otholobium hirtum and Aspalathus linearis were grown at densities of 1, 4, 8 and 16 plants per 13-cm pot with or without vesicular-arbuscular (VA) mycorrhizal inoculum for 120 days. Plant mass, relative growth rates, height and leaf number all decreased with increasing plant density. This was ascribed to the decreasing availability of phosphorus per plant as density increased. O. hirtum was highly dependent on mycorrhizas for P uptake but both mycorrhizal and non-mycorrhizal A. linearis seedlings were able to extract soil P with equal ease. Plant size distribution as measured by the coefficient of variation (CV) of shoot mass was greater at higher densities. CVs of mycorrhizal O. hirtum plants were higher than those of non-mycorrhizal plants. CVs of the facultatively mycorrhizal A. linearis were similar for both mycorrhizal and non-mycorrhizal plants. Higher CVs are attributed to resource preemption by larger individuals. Individuals in populations with high CVs will probably survive stress which would result in the extinction of populations with low CVs. Mass of mycorrhizal plants of both species decreased more rapidly with increasing density than did non-mycorrhizal plant mass. It is concluded that the cost of being mycorrhizal increases as plant density increases, while the benefit decreases. The results suggest that mycorrhizas will influence density-dependent population processes of faculative and obligate mycorrhizal species.

Seasonal/Interannual Variations of Carbon Sequestration and Carbon Emission in a Warm-Season Perennial Grassland

OpenAIRE

Deepa Dhital; Tomoharu Inoue; Hiroshi Koizumi

2014-01-01

Carbon sequestration and carbon emission are processes of ecosystem carbon cycling that can be affected while land area converted to grassland resulting in increased soil carbon storage and below-ground respiration. Discerning the importance of carbon cycle in grassland, we aimed to estimate carbon sequestration in photosynthesis and carbon emission in respiration from soil, root, and microbes, for four consecutive years (2007–2010) in a warm-season perennial grassland, Japan. Soil carbon emi...

Effects of native perennial vegetation buffer strips on dissolved organic carbon in surface runoff from an agricultural landscape

Science.gov (United States)

Tomorra E. Smith; Randall K. Kolka; Xiaobo Zhou; Matthew J. Helmers; Richard M. Cruse; Mark D. Tomer

2014-01-01

Dissolved organic carbon (DOC) constitutes a small yet important part of a watershed's carbon budget because it is mobile and biologically active. Agricultural conservation practices such as native perennial vegetation (NPV) strips will influence carbon cycling of an upland agroecosystem, and could affect how much DOC enters streams in runoff, potentially...

A Simple and Fast Kinetic Assay for the Determination of Fructan Exohydrolase Activity in Perennial Ryegrass (Lolium perenne L.)

Czech Academy of Sciences Publication Activity Database

Gasperl, A.; Morvan-Bertrand, A.; Prud'homme, M. P.; van der Graaff, E.; Roitsch, Thomas

2015-01-01

Roč. 6, dec (2015), s. 1154 ISSN 1664-462X R&D Projects: GA MŠk(CZ) LO1415 Institutional support: RVO:67179843 Keywords : 1-FEH * enzymaticactivity * fructanexohydrolase * fructandegradation * kinetic assay * perennial ryegrass Subject RIV: EH - Ecology, Behaviour Impact factor: 4.495, year: 2015

Perennial grasses as the ecological link for preserving the fertility of the peat soils polluted by radionuclides

International Nuclear Information System (INIS)

Podolyak, A.G.; Saraseko, E.G.; Arastovich, T.V.; Suzko, O.V.; Tagaj, S.A.; Lasko, T.V.; Goloveshkin, V.V.

2011-01-01

The problem of degradation of peat soils polluted with 137Cs and 90Sr and cultivation of the crop production on them is considered. Distribution of grasslands and pastures on polluted peat soils by the regions of the Republic of Belarus is presented. Characteristics of the peat soils are shown. Coefficients of migration of radionuclides in perennial grasses' hay depending on mobile potassium availability (for 137Cs) and soil reaction pHkci (for 90sr) are evaluated. Inadequacy of the hay, harvested on polluted territories, to the main quality characteristics is presented and analyzed. Crop mixtures recommended for grasslands and pastures reseeding on polluted territories are suggested. The list of cultivars suitable for the conditions of over wetting is offered. It is recommended to use shallow peat soils as grasslands. Permanent cereal grasses restore organic matter of these soils and provide economic efficiency of agricultural use. According the results of the research the transfer factors of 137Cs and 90Sr to plants are relatively low. This fact is explained by the time that has passed since the accident on Chernobyl nuclear power plant and by the variations of mobile potassium and exchangeable acidity in peat soils

Physiological Mechanism of Enhancing Salt Stress Tolerance of Perennial Ryegrass by 24-Epibrassinolide

Directory of Open Access Journals (Sweden)

Wenli Wu

2017-06-01

Full Text Available Brassinosteroids (BR regulate plant tolerance to salt stress but the mechanisms underlying are not fully understood. This study was to investigate physiological mechanisms of 24-epibrassinolide (EBR's impact on salt stress tolerance in perennial ryegrass (Lolium perenne L. The grass seedlings were treated with EBR at 0, 10, and 100 nM, and subjected to salt stress (250 mM NaCl. The grass irrigated with regular water without EBR served as the control. Salt stress increased leaf electrolyte leakage (EL, malondialdehyde (MDA, and reduced photosynthetic rate (Pn. Exogenous EBR reduced EL and MDA, increased Pn, chlorophyll content, and stomatal conductance (gs. The EBR applications also alleviated decline of superoxide dismutase (SOD and catalase (CAT and ascorbate peroxidase (APX activity when compared to salt treatment alone. Salt stress increased leaf abscisic acid (ABA and gibberellin A4 (GA4 content but reduced indole-3-acetic acid (IAA, zeatin riboside (ZR, isopentenyl adenosine (iPA, and salicylic acid (SA. Exogenous EBR at 10 nm and 100 nM increased ABA, and iPA content under salt stress. The EBR treatment at 100 nM also increased leaf IAA, ZR, JA, and SA. In addition, EBR treatments increased leaf proline and ions (K+, Mg2+, and Ca2+ content, and reduced Na+/K+ in leaf tissues. The results of this study suggest that EBR treatment may improve salt stress tolerance by increasing the level of selected hormones and antioxidant enzyme (SOD and CAT activity, promoting accumulation of proline and ions (K+, Ca2+, and Mg2+ in perennial ryegrass.

Strip cropping of alternating perennial grass–clover and annual rye–vetch intercrops when grown within an organic farming system

DEFF Research Database (Denmark)

Hauggaard-Nielsen, Henrik; Johansen, A.; Carter, Mette Sustmann

2012-01-01

interactions. Less soil water content below the perennial strip indicated greater water uptake, than below the annual strips. Unfortunately, the present strip cropping system did not possess the right balance of co-existence and complementarity. However, from a practical point of view the system was manageable...

Foundations of data-intensive science: Technology and practice for high throughput, widely distributed, data management and analysis systems

Science.gov (United States)

Johnston, William; Ernst, M.; Dart, E.; Tierney, B.

2014-04-01

Today's large-scale science projects involve world-wide collaborations depend on moving massive amounts of data from an instrument to potentially thousands of computing and storage systems at hundreds of collaborating institutions to accomplish their science. This is true for ATLAS and CMS at the LHC, and it is true for the climate sciences, Belle-II at the KEK collider, genome sciences, the SKA radio telescope, and ITER, the international fusion energy experiment. DOE's Office of Science has been collecting science discipline and instrument requirements for network based data management and analysis for more than a decade. As a result of this certain key issues are seen across essentially all science disciplines that rely on the network for significant data transfer, even if the data quantities are modest compared to projects like the LHC experiments. These issues are what this talk will address; to wit: 1. Optical signal transport advances enabling 100 Gb/s circuits that span the globe on optical fiber with each carrying 100 such channels; 2. Network router and switch requirements to support high-speed international data transfer; 3. Data transport (TCP is still the norm) requirements to support high-speed international data transfer (e.g. error-free transmission); 4. Network monitoring and testing techniques and infrastructure to maintain the required error-free operation of the many R&E networks involved in international collaborations; 5. Operating system evolution to support very high-speed network I/O; 6. New network architectures and services in the LAN (campus) and WAN networks to support data-intensive science; 7. Data movement and management techniques and software that can maximize the throughput on the network connections between distributed data handling systems, and; 8. New approaches to widely distributed workflow systems that can support the data movement and analysis required by the science. All of these areas must be addressed to enable large

Synergistic Effects of Bacillus amyloliquefaciens (GB03) and Water Retaining Agent on Drought Tolerance of Perennial Ryegrass.

Science.gov (United States)

Su, An-Yu; Niu, Shu-Qi; Liu, Yuan-Zheng; He, Ao-Lei; Zhao, Qi; Paré, Paul W; Li, Meng-Fei; Han, Qing-Qing; Ali Khan, Sardar; Zhang, Jin-Lin

2017-12-11

Water retaining agent (WRA) is widely used for soil erosion control and agricultural water saving. Here, we evaluated the effects of the combination of beneficial soil bacterium Bacillus amyloliquefaciens strain GB03 and WRA (the compound is super absorbent hydrogels) on drought tolerance of perennial ryegrass ( Lolium perenne L.). Seedlings were subjected to natural drought for maximum 20 days by stopping watering and then rewatered for seven days. Plant survival rate, biomass, photosynthesis, water status and leaf cell membrane integrity were measured. The results showed that under severe drought stress (20-day natural drought), compared to control, GB03, WRA and GB03+WRA all significantly improved shoot fresh weight, dry weight, relative water content (RWC) and chlorophyll content and decreased leaf relative electric conductivity (REC) and leaf malondialdehyde (MDA) content; GB03+WRA significantly enhanced chlorophyll content compared to control and other two treatments. Seven days after rewatering, GB03, WRA and GB03+WRA all significantly enhanced plant survival rate, biomass, RWC and maintained chlorophyll content compared to control; GB03+WRA significantly enhanced plant survival rate, biomass and chlorophyll content compared to control and other two treatments. The results established that GB03 together with water retaining agent promotes ryegrass growth under drought conditions by improving survival rate and maintaining chlorophyll content.

Noncorrelated effects of seed predation and pollination on the perennial herb Ruellia nudiflora remain spatially consistent

OpenAIRE

Abdala-Roberts, Luis; Parra-Tabla, Víctor; Salinas-Peba, Luis; Herrera, Carlos M.

2009-01-01

By simultaneously manipulating both seed predator and pollinator effects on the perennial herb Ruellia nudiflora at two sites in Yucatan (Mexico), the present study evaluated (1) whether a correlation (interaction) existed between seed predator and pollinator effects on R. nudiflora seed production and (2) whether such an interaction varied geographically. We used three populations per site, and a total of 20 plants per population (N = 120). Groups of five plants wer...

Modeling plant interspecific interactions from experiments with perennial crop mixtures to predict optimal combinations.

Science.gov (United States)

Halty, Virginia; Valdés, Matías; Tejera, Mauricio; Picasso, Valentín; Fort, Hugo

2017-12-01

The contribution of plant species richness to productivity and ecosystem functioning is a longstanding issue in ecology, with relevant implications for both conservation and agriculture. Both experiments and quantitative modeling are fundamental to the design of sustainable agroecosystems and the optimization of crop production. We modeled communities of perennial crop mixtures by using a generalized Lotka-Volterra model, i.e., a model such that the interspecific interactions are more general than purely competitive. We estimated model parameters -carrying capacities and interaction coefficients- from, respectively, the observed biomass of monocultures and bicultures measured in a large diversity experiment of seven perennial forage species in Iowa, United States. The sign and absolute value of the interaction coefficients showed that the biological interactions between species pairs included amensalism, competition, and parasitism (asymmetric positive-negative interaction), with various degrees of intensity. We tested the model fit by simulating the combinations of more than two species and comparing them with the polycultures experimental data. Overall, theoretical predictions are in good agreement with the experiments. Using this model, we also simulated species combinations that were not sown. From all possible mixtures (sown and not sown) we identified which are the most productive species combinations. Our results demonstrate that a combination of experiments and modeling can contribute to the design of sustainable agricultural systems in general and to the optimization of crop production in particular. © 2017 by the Ecological Society of America.

Potential impacts to perennial springs from tar sand mining, processing, and disposal on the Tavaputs Plateau, Utah, USA

International Nuclear Information System (INIS)

Johnson, William P.; Frederick, Logan E.; Millington, Mallory R.; Vala, David; Reese, Barbara K.; Freedman, Dina R.; Stenten, Christina J.; Trauscht, Jacob S.; Tingey, Christopher E.; Kip Solomon, D.; Fernandez, Diego P.; Bowen, Gabriel J.

2015-01-01

Similar to fracking, the development of tar sand mining in the U.S. has moved faster than understanding of potential water quality impacts. Potential water quality impacts of tar sand mining, processing, and disposal to springs in canyons incised approximately 200 m into the Tavaputs Plateau, at the Uinta Basin southern rim, Utah, USA, were evaluated by hydrogeochemical sampling to determine potential sources of recharge, and chemical thermodynamic estimations to determine potential changes in transfer of bitumen compounds to water. Because the ridgetops in an area of the Tavaputs Plateau named PR Spring are starting to be developed for their tar sand resource, there is concern for potential hydrologic connection between these ridgetops and perennial springs in adjacent canyons on which depend ranching families, livestock, wildlife and recreationalists. Samples were collected from perennial springs to examine possible progression with elevation of parameters such as temperature, specific conductance, pH, dissolved oxygen, isotopic tracers of phase change, water-rock interaction, and age since recharge. The groundwater age dates indicate that the springs are recharged locally. The progression of hydrogeochemical parameters with elevation, in combination with the relatively short groundwater residence times, indicate that the recharge zone for these springs includes the surrounding ridges, and thereby suggests a hydrologic connection between the mining, processing, disposal area and the springs. Estimations based on chemical thermodynamic approaches indicate that bitumen compounds will have greatly enhanced solubility in water that comes into contact with the residual bitumen–solvent mixture in disposed tailings relative to water that currently comes into contact with natural tar. - Highlights: • The potential water quality impacts of the first US tar sand development are considered. • Analyses of perennial springs in adjacent canyons indicate hydrologic

Potential impacts to perennial springs from tar sand mining, processing, and disposal on the Tavaputs Plateau, Utah, USA

Energy Technology Data Exchange (ETDEWEB)

Johnson, William P.; Frederick, Logan E.; Millington, Mallory R. [University of Utah, Department of Geology & Geophysics, Salt lake City, UT 84112 (United States); Vala, David [Murray High School, Murray, UT 84107 (United States); Reese, Barbara K. [Butler Middle School, Cottonwood Heights, UT 84121 (United States); Freedman, Dina R. [Hillside Middle School, Salt Lake City, UT 84108 (United States); Stenten, Christina J. [Draper Park Middle School, Draper, UT 84020 (United States); Trauscht, Jacob S.; Tingey, Christopher E.; Kip Solomon, D.; Fernandez, Diego P.; Bowen, Gabriel J. [University of Utah, Department of Geology & Geophysics, Salt lake City, UT 84112 (United States)

2015-11-01

Similar to fracking, the development of tar sand mining in the U.S. has moved faster than understanding of potential water quality impacts. Potential water quality impacts of tar sand mining, processing, and disposal to springs in canyons incised approximately 200 m into the Tavaputs Plateau, at the Uinta Basin southern rim, Utah, USA, were evaluated by hydrogeochemical sampling to determine potential sources of recharge, and chemical thermodynamic estimations to determine potential changes in transfer of bitumen compounds to water. Because the ridgetops in an area of the Tavaputs Plateau named PR Spring are starting to be developed for their tar sand resource, there is concern for potential hydrologic connection between these ridgetops and perennial springs in adjacent canyons on which depend ranching families, livestock, wildlife and recreationalists. Samples were collected from perennial springs to examine possible progression with elevation of parameters such as temperature, specific conductance, pH, dissolved oxygen, isotopic tracers of phase change, water-rock interaction, and age since recharge. The groundwater age dates indicate that the springs are recharged locally. The progression of hydrogeochemical parameters with elevation, in combination with the relatively short groundwater residence times, indicate that the recharge zone for these springs includes the surrounding ridges, and thereby suggests a hydrologic connection between the mining, processing, disposal area and the springs. Estimations based on chemical thermodynamic approaches indicate that bitumen compounds will have greatly enhanced solubility in water that comes into contact with the residual bitumen–solvent mixture in disposed tailings relative to water that currently comes into contact with natural tar. - Highlights: • The potential water quality impacts of the first US tar sand development are considered. • Analyses of perennial springs in adjacent canyons indicate hydrologic

Exogenous Classic Phytohormones Have Limited Regulatory Effects on Fructan and Primary Carbohydrate Metabolism in Perennial Ryegrass (Lolium perenne L.)

Czech Academy of Sciences Publication Activity Database

Gasperl, A.; Morvan-Bertrand, A.; Prud'homme, M. P.; van der Graaff, E.; Roitsch, Thomas

2016-01-01

Roč. 6, jan (2016), s. 1251 ISSN 1664-462X R&D Projects: GA MŠk(CZ) LO1415 Institutional support: RVO:67179843 Keywords : enzymatic activity * fructan exohydrolase * fructan metabolism * fructosyltransferase * perennial ryegrass * phytohormones * primary carbohydrate metabolism Subject RIV: ED - Physiology Impact factor: 4.298, year: 2016

Evaluation of Seed and Forage Yield of Perennial Plants with Low Water Requirement in Abandoned Farming Lands

Directory of Open Access Journals (Sweden)

Ali gazanchian

2017-10-01

Full Text Available Introduction Drought is a natural phenomenon in arid and semi-arid regions of the world. It is created by low precipitation, high evaporation and reduced soil moisture. Today, they are the major threats to agricultural lands due to fluctuations in rainfall, limited water resources, wells salinization and subsequently abandoned farming lands. Iran is located on the world's dry belt and more than 90 percent of its area is located in the arid and semi-arid climatic regions. It has been reported that the annual rate of soil erosion is up to 33 tons per hectare and 5 to 6 times more than the standard limit. Also, 90% of the country's protein production comes from animals sources. Due to the lack of adequate forage production, the main burden of protein production is imposed on the natural resources and pastures. Therefore, In order to enhance soil stabilization and maintain its fertility, optimum use of off-season precipitations, preventing the flow of water and protecting the abandoned farming lands from the flood risk, increasing the water permeability in the soil, and helping to feed the underwater aquifers and finally the production of forage and seeds, the development of perennial plants cultivation is an important conservative practice. The aim of this study is to emphasize on the selection of the best perennial forage species with low water requirements and acceptable performance for renovation of the abandoned farming lands and moving towards sustainable agriculture approaches. Materials and Methods In this experiment, 10 species of perennial grasses (Agropyron elongatum Host., Secale montanum Guss., Festuca arundinaceae Schreb., Dactylis glomerata L., Agropyron intermedium Host., Agropyron repense L., Agropyron cristatum L., Panicum antidutale Retz., Bromus inermis Leyss., Bromus riparius Rehmann, Agropyron cristatum L. and two legumes includes Trifolium pratense L., Onobrychis sativa Lam. were studied at Asatan-e-Ghods Razavi farm in

Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis.

Directory of Open Access Journals (Sweden)

Raees Khan

Full Text Available The substantial use of triclosan (TCS has been aimed to kill pathogenic bacteria, but TCS resistance seems to be prevalent in microbial species and limited knowledge exists about TCS resistance determinants in a majority of pathogenic bacteria. We aimed to evaluate the distribution of TCS resistance determinants in major pathogenic bacteria (N = 231 and to assess the enrichment of potentially pathogenic genera in TCS contaminated environments. A TCS-resistant gene (TRG database was constructed and experimentally validated to predict TCS resistance in major pathogenic bacteria. Genome-wide in silico analysis was performed to define the distribution of TCS-resistant determinants in major pathogens. Microbiome analysis of TCS contaminated soil samples was also performed to investigate the abundance of TCS-resistant pathogens. We experimentally confirmed that TCS resistance could be accurately predicted using genome-wide in silico analysis against TRG database. Predicted TCS resistant phenotypes were observed in all of the tested bacterial strains (N = 17, and heterologous expression of selected TCS resistant genes from those strains conferred expected levels of TCS resistance in an alternative host Escherichia coli. Moreover, genome-wide analysis revealed that potential TCS resistance determinants were abundant among the majority of human-associated pathogens (79% and soil-borne plant pathogenic bacteria (98%. These included a variety of enoyl-acyl carrier protein reductase (ENRs homologues, AcrB efflux pumps, and ENR substitutions. FabI ENR, which is the only known effective target for TCS, was either co-localized with other TCS resistance determinants or had TCS resistance-associated substitutions. Furthermore, microbiome analysis revealed that pathogenic genera with intrinsic TCS-resistant determinants exist in TCS contaminated environments. We conclude that TCS may not be as effective against the majority of bacterial pathogens as previously

Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis

Science.gov (United States)

Khan, Raees; Roy, Nazish; Choi, Kihyuck

2018-01-01

The substantial use of triclosan (TCS) has been aimed to kill pathogenic bacteria, but TCS resistance seems to be prevalent in microbial species and limited knowledge exists about TCS resistance determinants in a majority of pathogenic bacteria. We aimed to evaluate the distribution of TCS resistance determinants in major pathogenic bacteria (N = 231) and to assess the enrichment of potentially pathogenic genera in TCS contaminated environments. A TCS-resistant gene (TRG) database was constructed and experimentally validated to predict TCS resistance in major pathogenic bacteria. Genome-wide in silico analysis was performed to define the distribution of TCS-resistant determinants in major pathogens. Microbiome analysis of TCS contaminated soil samples was also performed to investigate the abundance of TCS-resistant pathogens. We experimentally confirmed that TCS resistance could be accurately predicted using genome-wide in silico analysis against TRG database. Predicted TCS resistant phenotypes were observed in all of the tested bacterial strains (N = 17), and heterologous expression of selected TCS resistant genes from those strains conferred expected levels of TCS resistance in an alternative host Escherichia coli. Moreover, genome-wide analysis revealed that potential TCS resistance determinants were abundant among the majority of human-associated pathogens (79%) and soil-borne plant pathogenic bacteria (98%). These included a variety of enoyl-acyl carrier protein reductase (ENRs) homologues, AcrB efflux pumps, and ENR substitutions. FabI ENR, which is the only known effective target for TCS, was either co-localized with other TCS resistance determinants or had TCS resistance-associated substitutions. Furthermore, microbiome analysis revealed that pathogenic genera with intrinsic TCS-resistant determinants exist in TCS contaminated environments. We conclude that TCS may not be as effective against the majority of bacterial pathogens as previously presumed

IQ Score of Children with Persistent or Perennial Allergic Rhinitis: A Comparison with Healthy Children.

Science.gov (United States)

Ghaffari, Javad; Abbaskhanian, Ali; Jalili, Masumeh; Yazdani Charati, Jamshid

2014-01-01

Prevalence of allergies is different around the world. Allergic rhinitis is a common chronic disease in children. Intelligence quotient (IQ) is an indicator of efficacy and many factors including chronic diseases may affect it. This study compares the IQs of children diagnosed with persistent or perennial allergic rhinitis with healthy children. This was a comparative study that was conducted from June 2011-May 2013 in an academic referral clinic. In this study, 90 patients aged 6- to 14-yearsold who were diagnosed with persistent or perennial allergic rhinitis and were compared to 90 age and gender match healthy patients from their respective families. The Wechsler Intelligence Scale for Children was used to divide and calculate overall IQ, verbal IQ, and practical IQ. The t-test and chi square were used to analyze quantitative variables and qualitative variables, respectively. In this study, out of total 180 children, 90 (50%) in the case group and 90 children (50%), the control group participated for IQ comparison. One hundred (57%) were male and 80 (43%) were female. The overall IQ for allergic rhinitis patients and healthy patients was 109.2 and 107.5, respectively. This difference was not considered significant. Furthermore, there was no significant difference between the IQ scores of males and females. Although allergic rhinitis is a chronic disease and effects quality of life, there were no identifiable negative effects on IQ.

Cryptic sexual populations account for genetic diversity and ecological success in a widely distributed, asexual fungus-growing ant.

Science.gov (United States)

Rabeling, Christian; Gonzales, Omar; Schultz, Ted R; Bacci, Maurício; Garcia, Marcos V B; Verhaagh, Manfred; Ishak, Heather D; Mueller, Ulrich G

2011-07-26

Sex and recombination are central processes in life generating genetic diversity. Organisms that rely on asexual propagation risk extinction due to the loss of genetic diversity and the inability to adapt to changing environmental conditions. The fungus-growing ant species Mycocepurus smithii was thought to be obligately asexual because only parthenogenetic populations have been collected from widely separated geographic localities. Nonetheless, M. smithii is ecologically successful, with the most extensive distribution and the highest population densities of any fungus-growing ant. Here we report that M. smithii actually consists of a mosaic of asexual and sexual populations that are nonrandomly distributed geographically. The sexual populations cluster along the Rio Amazonas and the Rio Negro and appear to be the source of independently evolved and widely distributed asexual lineages, or clones. Either apomixis or automixis with central fusion and low recombination rates is inferred to be the cytogenetic mechanism underlying parthenogenesis in M. smithii. Males appear to be entirely absent from asexual populations, but their existence in sexual populations is indicated by the presence of sperm in the reproductive tracts of queens. A phylogenetic analysis of the genus suggests that M. smithii is monophyletic, rendering a hybrid origin of asexuality unlikely. Instead, a mitochondrial phylogeny of sexual and asexual populations suggests multiple independent origins of asexual reproduction, and a divergence-dating analysis indicates that M. smithii evolved 0.5-1.65 million years ago. Understanding the evolutionary origin and maintenance of asexual reproduction in this species contributes to a general understanding of the adaptive significance of sex.

Temperature profile data from MBT casts in a world-wide distribution from 23 December 1964 to 19 December 1991 (NODC Accession 0000216)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using MBT casts from multiple platforms in a world-wide distribution from December 23, 1964 to December 19, 1991. Additonal...

Progress and Bottlenecks in the Early Domestication of the Perennial Oilseed Silphium integrifolium, a Sunflower Substitute

Directory of Open Access Journals (Sweden)

Alejandra Vilela

2018-02-01

Full Text Available Silflower (Silphium integrifolium Michx. is in the early stages of domestication as a perennial version of oilseed sunflower, its close relative. Grain crops with deep perennial root systems will provide farmers with new alternatives for managing soil moisture and limiting or remediating soil erosion, fertilizer leaching, and loss of soil biota. Several cycles of selection for increased seed production potential following initial germplasm evaluation in 2002 have provided opportunities to document the botany and ecology of this relatively obscure species, to compare agronomic practices for improving its propagation and management, and to evaluate the differences between semi-domesticated and wild accessions that have accrued over this time through intentional and unintentional genetic processes. Key findings include: domestication has increased aboveground biomass at seedling and adult stages; seed yield has increased more, achieving modest improvement in harvest index. Harvest index decreases with nitrogen fertilization. Silflower acquires nitrogen and water from greater depth than typical crops. In agricultural silflower stands within its native range, we found that Puccinia silphii (rust and Eucosma giganteana (moth populations build up to unacceptable levels, but we also found genetic variation for traits contributing to resistance or tolerance. Breeding or management for reduced height and vegetative plasticity should be top priorities for future silflower research outside its native range.

Landscape control of nitrous oxide emissions during the transition from conservation reserve program to perennial grasses for bioenergy

Science.gov (United States)

Debasish Saha; Benjamin M. Rau; Jason P. Kaye; Felipe Montes; Paul R. Adler; Armen R. Kemanian

2016-01-01

Future liquid fuel demand from renewable sources may, in part, be met by converting the seasonally wet portions of the landscape currently managed for soil and water conservation to perennial energy crops. However, this shift may increase nitrous oxide (N2O) emissions, thus limiting the carbon (C) benefits of energy crops. Particularly high emissions may occur during...

Tracking Changes in Dissolved Organic Matter Patterns in Perennial Headwater Streams Throughout a Hydrologic Year Using In-situ Sensors and Optical Properties

Science.gov (United States)

Armstrong, A.; Epting, S.; Hosen, J. D.; Palmer, M.

2015-12-01

Dissolved organic matter (DOM) plays a central role in freshwater streams but key questions remain unanswered about temporal patterns in its quantity and composition. DOM in perennial streams in the temperate zone is a complex mixture reflecting a variety of sources such as leached plant material, organic matter from surrounding soils, and microbial processes in the streams themselves. Headwater perennial streams in the Tuckahoe Creek watershed of the Atlantic coastal plain (Maryland, USA) drain a mosaic of land cover types including row crops, forests, and both forested and marshy small depressional wetlands. Wetland-stream surface hydrologic connections generally occur between mid-fall and late spring, coinciding with peak wetland hydrologic expression (i.e. highest groundwater levels and surface inundation extent). When inundated, these wetlands contain high DOM concentrations, and surface connections may serve as conduits for downstream export. We hypothesized that changes in wetland-stream surface hydrologic connectivity would affect patterns of DOM concentration and composition in these streams. We deployed 6 sondes equipped with fluorescent DOM sensors in 4 perennial streams, 1 forested wetland, and the larger downstream channel draining all study sites for the 2015 water year. The 4 headwater streams drain areas containing forested wetlands and have documented temporary channel connections. Combined with baseflow and stormflow sampling, the sondes provided 15 minute estimates of dissolved organic carbon (DOC) concentrations. This resolution provided insights into patterns of DOC concentration across temporal scales from daily rhythms to seasonal changes, during both baseflow and storm conditions. Discrete measurements of absorbance and fluorescence provided information about DOM composition throughout the study. Together these measurements give a detailed record of DOM dynamics in multiple perennial headwater streams for an entire year. This information

Temperature profile data from XBT casts in a world wide distribution from 1996-06-01 to 1997-08-10 (NODC Accession 9700224)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected from XBT casts from several research vessels in a world wide distribution. Data were collected from June 1, 1996 to August...

Seedbed preparation influence on morphometric characteristics of perennial grasses of a semi-arid rangeland in Kenya

OpenAIRE

Opiyo, Francis EO; Ekaya, Wellington N; Nyariki, Dickson M; Mureithi, Stephen Mwangi

2011-01-01

Semi-arid rangelands in Kenya are an important source of forage for both domestic and wild animals. However, indigenous perennial grasses notably Cenchrus ciliaris (African foxtail grass), Eragrostis superba (Maasai love grass) and Enteropogon macrostachyus (Bush rye grass) are disappearing at an alarming rate. Efforts to re-introduce them through restoration programs have often yielded little success. This can partly be attributed to failure of topsoil to capture and store scarce water to me...

Genes and quantitative trait loci (QTL) controlling trace element concentrations in perennial grasses grown on phytotoxic soil contaminated with heavy metals

Science.gov (United States)

Perennial grasses cover diverse soils throughout the world, including sites contaminated with heavy metals, producing forages that must be safe for livestock and wildlife. Chromosome regions known as quantitative trait loci (QTLs) controlling forage mineral concentrations were mapped in a populatio...

Identifying ephemeral and perennial stream reaches using apparent thermal inertia for an ungauged basin: The Rio Salado, Central New Mexico

Science.gov (United States)

Night and day temperature images from Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) remote sensing images are used to identify ephemeral and perennial stream reaches for use in the calibration of an integrated hydrologic model of an ungauged basin. The concept is based on a...

Distribution modelling of pre-Columbian California grasslands with soil phytoliths: New insights for prehistoric grassland ecology and restoration.

Science.gov (United States)

Fick, Stephen E; Evett, Rand R

2018-01-01

Historical reconstructions of plant community distributions are useful for biogeographic studies and restoration planning, but the quality of insights gained depends on the depth and reliability of historical information available. For the Central Valley of California, one of the most altered terrestrial ecosystems on the planet, this task is particularly difficult given poor historical documentation and sparse relict assemblages of pre-invasion plant species. Coastal and interior prairies were long assumed to have been dominated by perennial bunchgrasses, but this hypothesis has recently been challenged. We evaluated this hypothesis by creating species distribution models (SDMs) using a novel approach based on the abundance of soil phytoliths (microscopic particles of biogenic silica used as a proxy for long-term grass presence) extracted from soil samples at locations statewide. Modeled historical grass abundance was consistently high along the coast and to a lesser extent in higher elevation foothills surrounding the Central Valley. SDMs found strong associations with mean temperature, temperature variability, and precipitation variability, with higher predicted abundance in regions with cooler, equable temperatures and moderated rainfall, mirroring the pattern for modern perennial grass distribution across the state. The results of this study strongly suggest that the pre-Columbian Central Valley of California was not dominated by grasses. Using soil phytolith data as input for SDMs is a promising new method for predicting the extent of prehistoric grass distributions where alternative historical datasets are lacking.

Epigenetic variation predicts regional and local intraspecific functional diversity in a perennial herb.

Science.gov (United States)

Medrano, Mónica; Herrera, Carlos M; Bazaga, Pilar

2014-10-01

The ecological significance of epigenetic variation has been generally inferred from studies on model plants under artificial conditions, but the importance of epigenetic differences between individuals as a source of intraspecific diversity in natural plant populations remains essentially unknown. This study investigates the relationship between epigenetic variation and functional plant diversity by conducting epigenetic (methylation-sensitive amplified fragment length polymorphisms, MSAP) and genetic (amplified fragment length polymorphisms, AFLP) marker-trait association analyses for 20 whole-plant, leaf and regenerative functional traits in a large sample of wild-growing plants of the perennial herb Helleborus foetidus from ten sampling sites in south-eastern Spain. Plants differed widely in functional characteristics, and exhibited greater epigenetic than genetic diversity, as shown by per cent polymorphism of MSAP fragments (92%) or markers (69%) greatly exceeding that for AFLP ones (41%). After controlling for genetic structuring and possible cryptic relatedness, every functional trait considered exhibited a significant association with at least one AFLP or MSAP marker. A total of 27 MSAP (13.0% of total) and 12 AFLP (4.4%) markers were involved in significant associations, which explained on average 8.2% and 8.0% of trait variance, respectively. Individual MSAP markers were more likely to be associated with functional traits than AFLP markers. Between-site differences in multivariate functional diversity were directly related to variation in multilocus epigenetic diversity after multilocus genetic diversity was statistically accounted for. Results suggest that epigenetic variation can be an important source of intraspecific functional diversity in H. foetidus, possibly endowing this species with the capacity to exploit a broad range of ecological conditions despite its modest genetic diversity. © 2014 John Wiley & Sons Ltd.

The potential of perennial cave ice in isotope palaeoclimatology

International Nuclear Information System (INIS)

Yonge, Charles J.; MacDonald, William D.

1999-01-01

Perennial ice from caves on and to the east of the Canadian Great Divide yield delta O 18 and delta D values which are usually high measurements where compared with the average precipitation for the region. Furthermore, these ice data fall below and along lines of lower slope than the Global Meteoric Water Line. To explain the observed relationships, we propose the following process. a vapour-ice isotopic fractionation mechanism operates on warm season vapour when it precipitates as hoar ice on entering the caves. The subsequent fall of hoar to the cave floor through mechanical overloading along with ice derived from ground-water seepage (with a mean annual isotopic composition), results in massive ice formation of a mixed composition. This mixed composition is what is observed in the characteristic relationships found here. Such findings suggest that a warm versus cold climate interpretation for ancient cave ice may be the opposite of that found in the more familiar polar and glacial ice caves. (Author) 3 figs., 1 tab., 12 refs

Review of literature on perennial peanut (Arachis pintoi) as potential cover crop in the tropics

OpenAIRE

Kartika, J.G.; Reyes, Manuel R.; Susila, Anas D.

2007-01-01

The use of living mulch as a substitute for plastic mulch is increasing in the tropics as researchers have gradually shifted their attention to organic farming systems. Arachis pintoi is a perennial plant and a member of the leguminosae family. A. pintoi has good potential for use as a living mulch in association with vegetables, trees, or grass (as a pasture) because of its ability to fix nitrogen from the atmosphere and to grow in heavy shade. This work, based on fact sheets, journals and t...

Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers

DEFF Research Database (Denmark)

Tomaszewski, Céline; Byrne, Stephen; Foito, Alexandra

2012-01-01

Perennial ryegrass is the principal forage grass species used in temperate agriculture. In recent years, significant efforts have been made to develop molecular marker strategies to allow cost-effective characterization of a large number of loci simultaneously. One such strategy involves using DAr......T markers, and a DArT array has recently been developed for the Lolium-Festuca complex. In this study, we report the first use of the DArTFest array to generate a genetic linkage map based on 326 markers in a Lolium perenne F2 population, consisting of 325 genotypes. For proof of concept, the map was used...

Impact of perennial energy crops income variability on the crop selection of risk averse farmers

International Nuclear Information System (INIS)

Alexander, Peter; Moran, Dominic

2013-01-01

The UK Government policy is for the area of perennial energy crops in the UK to expand significantly. Farmers need to choose these crops in preference to conventional rotations for this to be achievable. This paper looks at the potential level and variability of perennial energy crop incomes and the relation to incomes from conventional arable crops. Assuming energy crop prices are correlated to oil prices the results suggests that incomes from them are not well correlated to conventional arable crop incomes. A farm scale mathematical programming model is then used to attempt to understand the affect on risk averse farmers crop selection. The inclusion of risk reduces the energy crop price required for the selection of these crops. However yields towards the highest of those predicted in the UK are still required to make them an optimal choice, suggesting only a small area of energy crops within the UK would be expected to be chosen to be grown. This must be regarded as a tentative conclusion, primarily due to high sensitivity found to crop yields, resulting in the proposal for further work to apply the model using spatially disaggregated data. - Highlights: ► Energy crop and conventional crop incomes suggested as uncorrelated. ► Diversification effect of energy crops investigated for a risk averse farmer. ► Energy crops indicated as optimal selection only on highest yielding UK sites. ► Large establishment grant rates to substantially alter crop selections.

Synergistic Effects of Bacillus amyloliquefaciens (GB03 and Water Retaining Agent on Drought Tolerance of Perennial Ryegrass

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An-Yu Su

2017-12-01

Full Text Available Water retaining agent (WRA is widely used for soil erosion control and agricultural water saving. Here, we evaluated the effects of the combination of beneficial soil bacterium Bacillus amyloliquefaciens strain GB03 and WRA (the compound is super absorbent hydrogels on drought tolerance of perennial ryegrass (Lolium perenne L.. Seedlings were subjected to natural drought for maximum 20 days by stopping watering and then rewatered for seven days. Plant survival rate, biomass, photosynthesis, water status and leaf cell membrane integrity were measured. The results showed that under severe drought stress (20-day natural drought, compared to control, GB03, WRA and GB03+WRA all significantly improved shoot fresh weight, dry weight, relative water content (RWC and chlorophyll content and decreased leaf relative electric conductivity (REC and leaf malondialdehyde (MDA content; GB03+WRA significantly enhanced chlorophyll content compared to control and other two treatments. Seven days after rewatering, GB03, WRA and GB03+WRA all significantly enhanced plant survival rate, biomass, RWC and maintained chlorophyll content compared to control; GB03+WRA significantly enhanced plant survival rate, biomass and chlorophyll content compared to control and other two treatments. The results established that GB03 together with water retaining agent promotes ryegrass growth under drought conditions by improving survival rate and maintaining chlorophyll content.

Time Distribution Capabilities of the Wide Area Augmentation System (WAAS)

National Research Council Canada - National Science Library

Klepczynski, William J; Fenton, Pat; Powers, Ed

2001-01-01

...), the FAA has been interested in developing the use of the WAAS for time distribution. An economical, evolutionary approach to the development of the WAAS for time distribution has been pursued...

Temperature profile data collected in a world wide distribution using XBT casts from 01 January 1994 to 25 May 1994 (NODC Accession 9600159)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT casts from the ANGO and other platforms in a world wide distribution. Data were collected from 01 January 1994 to...

Study of Potential and Real Seed Producing Capacity in Some Romanian Varieties of Legumes and Perennial Gramineae

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Neculai Dragomir

2010-10-01

Full Text Available This work presents the potential and real seed producing capacity in some Romanian varieties of legumes and perennial gramineae: Trifolium repens, Lotus corniculatus, Lolium perenne, Festuca pratensis, Festuca arundinacea and Dactylis glomerata. To calculate the potential production, we performed determinations and analyses on each variety, regarding floral apparatus’ morphological and anatomic structure (number of inflorescences, number of flowers, number of ovules/ovary, and the real production was determined „in situ”.

Bud Dormancy in Perennial Fruit Tree Species: A Pivotal Role for Oxidative Cues

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Rémi Beauvieux

2018-05-01

Full Text Available For perennial plants, bud dormancy is a crucial step as its progression over winter determines the quality of bud break, flowering, and fruiting. In the past decades, many studies, based on metabolic, physiological, subcellular, genetic, and genomic analyses, have unraveled mechanisms underlying bud dormancy progression. Overall, all the pathways identified are interconnected in a very complex manner. Here, we review early and recent findings on the dormancy processes in buds of temperate fruit trees species including hormonal signaling, the role of plasma membrane, carbohydrate metabolism, mitochondrial respiration and oxidative stress, with an effort to link them together and emphasize the central role of reactive oxygen species accumulation in the control of dormancy progression.

Recycling of uranium by a perennial vegetation

International Nuclear Information System (INIS)

Thiry, Y.

2005-01-01

At sites of large scale mining and processing of uranium ore, tailings and waste rock piles are today the most visible relics of the uranium extractive industry. These mining relics are constantly subjected to weathering and leaching processes causing the dissemination of radioactive and toxic elements and sometimes requiring remedial operations. The in situ remediation of waste rock piles usually includes their revegetation for minimizing the water infiltration and for increasing surface soil stability. Thanks to its biomass density and longevity, the perennial vegetation plays an important role in stabilisation of the water cycling. The buffer role of forest vegetation can reduce water export from watersheds as well as erosion and hydrological losses of chemicals including radionuclides from contaminated sites. If long term reduction of contaminant dispersion at revegetated uranium mining sites is to be fully appreciated, then the extent of radioactive contaminant availability to forest vegetation and ecosystem cycling as well as the possible economic valorisation of the woody products must be considered. Concerned study focused on a Scots pine plantation established 35 years ago on a uranium waste rock pile (Wismuth GmbH) situated near Schlema (Germany). This investigation aimed at quantifying the mobility of uranium in the mining debris and its transport to the different tree compartments with emphasis on the processes involved. The influence of pine vegetation on uranium cycling dynamics was further assessed in terms of annual fluxes)

Comparison of the fatty acid composition of fresh and ensiled perennial ryegrass (Lolium perenne L.), affected by cultivar and regrowth interval

NARCIS (Netherlands)

Elgersma, A.; Ellen, G.; Horst, van der H.; Muuse, B.G.; Boer, H.; Tamminga, S.

2003-01-01

Two experiments were conducted to evaluate the effects of grass cultivar and regrowth stage on the fatty acid (FA) profile in fresh and ensiled perennial ryegrass (Lolium perenne L.). The Experiment 1 compared the composition of fresh grass with that of pre-wilted ensiled material of six cultivars,

Bioestadística en cultivos Perennes Biostatistics in Perennial crops

Directory of Open Access Journals (Sweden)

Martínez B. Ricardo

1989-12-01

varios períodos de tiempo sobre las mismas plantas. El análisis estadístico debe tener en cuenta esto y por lo tanto se sugieren algunos métodos de trabajo.Perennial crops live longer than annual crops, and since they are likely to be larger, experiments with them face special problems. The experiments often taken several years, so the plants are at risk longer, increasing the likelihood of mishap and thus unbalanced data, so greater caution is needed in making plants about them. The experimental design must be able to tolerate the inevitable missing data. Whatever design is used, it must be throughly practicable, for it is no use producing a scheme on paper that will give endless trouble in the field. Experimental objetives may change over time, requiring modification of the original study plan. It is better simple experimental design than complex ones, these are inflexible and are seriously undermined by missing data in both computation and interpretation. Since perennials are in general larger than annuals are of greater interest as individuals, and will probably use single.plant or several
plant plots, and environmental variation in rarely of sole importance. With perennials the experimenter should not assume de error variation as positional, Le envirenmental,
some of it may well derive from the plants themselves.
Attempting to reduce error variance by merely increasing replicationwithin a standar design may not be satisfactory, The analysis of covariance has proven to be very effective
alternative in many cases, after reducing de error variance by 25.50%. The data will probably include several observations collected over time on the same plant. The statistical analysis must take this into account, and several possible methods
are suggested.

Water-right and water-allocation procedures of farmers' managed perennial spate irrigation systems of mithawan watershed, D.G. Khan, Pakistan

International Nuclear Information System (INIS)

Ahmad, M.; Ahmad, S.

2007-01-01

A study was conducted on water rights, water allocation and local institutions prevailing in the perennial spate irrigation systems of Mithawan watershed o D.G. Khan District of Punjab. The Study Area was selected is the Mthawan watershed on the D.G. Khan-Quetta Road almost 70 kms from D.G. Khan and 10 km away from the road, representing real-life operating systems. Small-scale isolated and large-scale contiguous perennial spate irrigation systems were selected for study. A three-prong methodology was designed covering (a) interactive dialogue of the focus groups to document the community-perceptions regarding systems water-rights, water allocation and local institution prevailing in the area; (b) structured interviews to document systematic data regarding some of the study-aspects; and (c) diagnostic surveys to document some of the measured data regarding scheme performance. Water rights and allocation procedures both in small-scale isolated and large-scale Contiguous perennial spate irrigation-system are very clearly defined and do not change with time and space. Local institutions like Biradri and Muchi take care of just allocation of water. An irrigator is deputed who takes care of allocated time among various tribes. At the same time, the community is bringing more area under irrigation. Obviously it has increased water-requirements and in turn management of irrigation system. Previously they were reconstructing the diversion structure only. Present expansion in irrigated area has increased the necessity of maintaining the water-conveyance network more frequently, particularly at critical sections. However, the realization regarding water-losses still needs to be promoted. The linkages of resource-management with water-productivity are going to be the future area of consideration in theses systems, due to expansion of the system largely because of increased population and urge to increase their livelihood. (author)

Considerations for Managing Agricultural Co-Existence between Transgenic and Non-Transgenic Cultivars of Outcrossing Perennial Forage Plants in Dairy Pastures

Directory of Open Access Journals (Sweden)

Kevin F. Smith

2016-11-01

Full Text Available Many of the major forage species used in agriculture are outcrossing and rely on the exchange of pollen between individuals for reproduction; this includes the major species used for dairy production in grazing systems: perennial ryegrass (Lolium perenne L. and white clover (Trifolium repens L.. Cultivars of these species have been co-existing since contrasting cultivars were developed using plant breeding, but the consequences and need for strategies to manage co-existence have been made more prominent with the advent of genetic modification. Recent technological developments have seen the experimental evaluation of genetically modified (GM white clover and perennial ryegrass, although there is no current commercial growing of GM cultivars of these species. Co-existence frameworks already exist for two major cross-pollinated grain crops (canola and maize in Europe, and for alfalfa (Medicago sativa L. in the US, so many of the principles that the industry has developed for co-existence in these crops such as detection techniques, segregation, and agronomic management provide lessons and guidelines for outcrossing forage species, that are discussed in this paper.

Facilitative Effect of a Generalist Herbivore on the Recovery of a Perennial Alga: Consequences for Persistence at the Edge of Their Geographic Range.

Science.gov (United States)

Aguilera, Moisés A; Valdivia, Nelson; Broitman, Bernardo R

2015-01-01

Understanding the impacts of consumers on the abundance, growth rate, recovery and persistence of their resources across their distributional range can shed light on the role of trophic interactions in determining species range shifts. Here, we examined if consumptive effects of the intertidal grazer Scurria viridula positively influences the abundance and recovery from disturbances of the alga Mazzaella laminarioides at the edge of its geographic distributions in northern-central Chilean rocky shores. Through field experiments conducted at a site in the region where M. laminarioides overlaps with the polar range edge of S. viridula, we estimated the effects of grazing on different life stages of M. laminarioides. We also used long-term abundance surveys conducted across ~700 km of the shore to evaluate co-occurrence patterns of the study species across their range overlap. We found that S. viridula had positive net effects on M. laminarioides by increasing its cover and re-growth from perennial basal crusts. Probability of occurrence of M. laminarioides increased significantly with increasing density of S. viridula across the range overlap. The negative effect of S. viridula on the percentage cover of opportunistic green algae-shown to compete for space with corticated algae-suggests that competitive release may be part of the mechanism driving the positive effect of the limpet on the abundance and recovery from disturbance of M. laminarioides. We suggest that grazer populations contribute to enhance the abundance of M. laminarioides, facilitating its recolonization and persistence at its distributional range edge. Our study highlights that indirect facilitation can determine the recovery and persistence of a resource at the limit of its distribution, and may well contribute to the ecological mechanisms governing species distributions and range shifts.

Facilitative Effect of a Generalist Herbivore on the Recovery of a Perennial Alga: Consequences for Persistence at the Edge of Their Geographic Range.

Directory of Open Access Journals (Sweden)

Moisés A Aguilera

Full Text Available Understanding the impacts of consumers on the abundance, growth rate, recovery and persistence of their resources across their distributional range can shed light on the role of trophic interactions in determining species range shifts. Here, we examined if consumptive effects of the intertidal grazer Scurria viridula positively influences the abundance and recovery from disturbances of the alga Mazzaella laminarioides at the edge of its geographic distributions in northern-central Chilean rocky shores. Through field experiments conducted at a site in the region where M. laminarioides overlaps with the polar range edge of S. viridula, we estimated the effects of grazing on different life stages of M. laminarioides. We also used long-term abundance surveys conducted across ~700 km of the shore to evaluate co-occurrence patterns of the study species across their range overlap. We found that S. viridula had positive net effects on M. laminarioides by increasing its cover and re-growth from perennial basal crusts. Probability of occurrence of M. laminarioides increased significantly with increasing density of S. viridula across the range overlap. The negative effect of S. viridula on the percentage cover of opportunistic green algae-shown to compete for space with corticated algae-suggests that competitive release may be part of the mechanism driving the positive effect of the limpet on the abundance and recovery from disturbance of M. laminarioides. We suggest that grazer populations contribute to enhance the abundance of M. laminarioides, facilitating its recolonization and persistence at its distributional range edge. Our study highlights that indirect facilitation can determine the recovery and persistence of a resource at the limit of its distribution, and may well contribute to the ecological mechanisms governing species distributions and range shifts.

Chlorophyll, temperature, depth, and irradiance data from bottle in a world-wide distribution from 28 February 1964 to 02 April 1994 (NODC Accession 0000268)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Chlorophyll, temperature, depth, and irradiance data were collected using bottle from multiple vessels in a world-wide distribution from 28 February 1964 to 02 April...

A Proteome Translocation Response to Complex Desert Stress Environments in Perennial Phragmites Sympatric Ecotypes with Contrasting Water Availability.

Science.gov (United States)

Li, Li; Chen, Xiaodan; Shi, Lu; Wang, Chuanjing; Fu, Bing; Qiu, Tianhang; Cui, Suxia

2017-01-01

After a long-term adaptation to desert environment, the perennial aquatic plant Phragmites communis has evolved a desert-dune ecotype. The desert-dune ecotype (DR) of Phragmites communis showed significant differences in water activity and protein distribution compared to its sympatric swamp ecotype (SR). Many proteins that were located in the soluble fraction of SR translocated to the insoluble fraction of DR, suggesting that membrane-associated proteins were greatly reinforced in DR. The unknown phenomenon in plant stress physiology was defined as a proteome translocation response. Quantitative 2D-DIGE technology highlighted these 'bound' proteins in DR. Fifty-eight kinds of proteins were identified as candidates of the translocated proteome in Phragmites . The majority were chloroplast proteins. Unexpectedly, Rubisco was the most abundant protein sequestered by DR. Rubisco activase, various chaperons and 2-cysteine peroxiredoxin were major components in the translocation response. Conformational change was assumed to be the main reason for the Rubisco translocation due to no primary sequence difference between DR and SR. The addition of reductant in extraction process partially reversed the translocation response, implying that intracellular redox status plays a role in the translocation response of the proteome. The finding emphasizes the realistic significance of the membrane-association of biomolecule for plant long-term adaptation to complex stress conditions.

Trophic strategy of Atlantirivulus riograndensis (Cyprinodontiformes: Rivulidae, a non-annual rivulid threatened by extinction, in a perennial environment, Brazil

Directory of Open Access Journals (Sweden)

Laísa Wociechoski Cavalheiro

Full Text Available ABSTRACT Rivulidae includes non-annual fish of perennial habitats and annual fish of temporary wetlands. The objective of this research was to investigate the trophic strategy of Atlantirivulus riograndensis in a perennial environment. Sampling occurred in an environmental conservation unit in the Pampa biome, Brazil. Quantification of the diet followed the volumetric method. Consumption of autochthonous material as the main food source of the species followed the pattern of Rivulidae. Species is zooplanktonic when young. Food spectrum is broadened and insectivorousness increases with ontogeny, revealing a specialist trend in the feeding strategy of A. riograndensis. The most diverse feeding occurs in the spring and summer seasons in which the presence of larger fish was more frequent than in other seasons. The increased consumption of microcrustaceans in the fall was related to smaller individuals, captured in greater quantities in this post-reproductive period. The lowest diversity of dietary items occurs during the winter and may reflect the lower diversity of food resources available in this season or the transition from juvenile to adult diet, with consumption of autochthonous Diptera by medium sized fish.

Temperature profiles from MBT casts from a World-Wide distribution from MULTIPLE PLATFORMS from 1948-04-08 to 1968-12-14 (NODC Accession 9300131)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected from MBT casts from a World-Wide distribution. Data were collected from MULTIPLE PLATFORMS from 08 April 1948 to 14 Decmeber...

Chemical, temperature, and other data from bottle casts in a world-wide distribution from 04 October 1961 to 24 August 1990 (NODC Accession 0000231)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Chemical, temperature, and other data were collected using bottle casts in a world-wide distribution from multiple ships from October 4, 1961 to August 24, 1990....

Acclimation of bloom-forming and perennial seaweeds to elevated pCO2 conserved across levels of environmental complexity.

Science.gov (United States)

Xu, Dong; Schaum, Charlotte-Elisa; Lin, Fan; Sun, Ke; Munroe, James R; Zhang, Xiao W; Fan, Xiao; Teng, Lin H; Wang, Yi T; Zhuang, Zhi M; Ye, Naihao

2017-11-01

Macroalgae contribute approximately 15% of the primary productivity in coastal marine ecosystems, fix up to 27.4 Tg of carbon per year, and provide important structural components for life in coastal waters. Despite this ecological and commercial importance, direct measurements and comparisons of the short-term responses to elevated pCO 2 in seaweeds with different life-history strategies are scarce. Here, we cultured several seaweed species (bloom forming/nonbloom forming/perennial/annual) in the laboratory, in tanks in an indoor mesocosm facility, and in coastal mesocosms under pCO 2 levels ranging from 400 to 2,000 μatm. We find that, across all scales of the experimental setup, ephemeral species of the genus Ulva increase their photosynthesis and growth rates in response to elevated pCO 2 the most, whereas longer-lived perennial species show a smaller increase or a decrease. These differences in short-term growth and photosynthesis rates are likely to give bloom-forming green seaweeds a competitive advantage in mixed communities, and our results thus suggest that coastal seaweed assemblages in eutrophic waters may undergo an initial shift toward communities dominated by bloom-forming, short-lived seaweeds. © 2017 John Wiley & Sons Ltd.

Effect of harvest timing on leaf production and yield of diterpene glycosides in Stevia rebaudiana Bert: a specialty perennial crop for Mississippi

Science.gov (United States)

Stevia rebaundiana (Bertoni), a perennial shrub of the Asteraceae, is one of the most important sources of non-caloric natural sweeteners. Stevia’s plant extracts and glycosides have been used for several years in Paraguay and Brazil. Several studies suggest that Stevia and its glycosides exert ben...

Annual maize and perennial grass-clover strip cropping for increased resource use efficiency and productivity using organic farming practice as a model

DEFF Research Database (Denmark)

Hauggaard-Nielsen, Henrik; Johansen, Anders; Carter, Mette Sustmann

2013-01-01

A cropping system was designed to fulfill the increasing demand for biomass for food and energy without decreasing long term soil fertility. A field experiment was carried out including alternating strips of annual maize (Zea mays L.) and perennial ryegrass (Lolium perenne L.) – clover (Trifolium...

Temperature profiles from XBT casts from a World-Wide distribution from MULTIPLE PLATFORMS from 1979-06-03 to 1988-05-27 (NODC Accession 8800182)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profiles were collected from XBT casts from a World-Wide distribution. Data were collected from MULTIPLE PLATFORMS from 03 June 1979 to 27 May 1988. Data...

Determinants of health disparities: The perennial struggle against polio in Nigeria

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Nosayaba Osazuwa-Peters

2011-01-01

Full Text Available Polio remains a global public health issue, and even though it has been eradicated from most countries of the world, countries like Nigeria, the largest black nation on earth, threatens the dream of total eradication of polio from the surface of the earth. Transmission of wild polio virus has never been eliminated in Nigeria, but even worse is the number of countries, both in Sub-Saharan Africa and all over the world that has become re-infected by polio virus strains from Northern Nigeria in recent past. Although a lot has been documented about the Nigerian polio struggle, one aspect that has received little attention on this issue is ethnic and geographic disparities between the Southern and the Northern parts of Nigeria. Understanding these disparities involved in polio virus transmission in Nigeria, as well as the social determinants of health prevalent in Northern Nigeria will help government and other stakeholders and policy makers to synergize their efforts in the fight against this perennial scourge.

The Effect of Heavy Metal Contaminated Soil on Growth and Development of Perennial Grasses

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Żurek G.

2013-04-01

Full Text Available Contamination of agricultural land in Poland by heavy metals is not a general problem but is limited to industrial areas. In regions of long history of industrial emission, of elevated levels of lead, cadmium, zinc and other ions during coal and ore mining and processing, as for example in Silesia, about 10 % of agricultural land may be characterized by exceeded maximum residue limits for Cd, Pb, Cu, Ni and Zn ions. Since the maintenance of agricultural areas in those regions is important from an ecological standpoint, the alternative farming activities are needed. Perennial grass biomass production for energy purposes is currently the best solution for majority of agricultural areas not suitable for food production in Poland. Along with increasing knowledge on separation and utilization of heavy metals (HM during and after biomass processing, phytoremediation of polluted soils will become important and valuable. To detect the effect of soil HM ions concentration on growth and development of selected, tall growing and high biomass yielding perennial grass cultivars, the chlorophyll fluorescence parameters were registered. The elevated content of Pb, Cd and Zn ions in soil influenced on decrease of: minimal (Fo, maximal (Fm and variable (Fv fluorescence level as well as on total complementary area on a diagram of chlorophyll a fluorescence induction curve (Area. Based on detected parameters it was concluded, that the high level of HM ions in soils negatively affected the efficiency of photosynthesis. Therefore, plant growth, as well as development of generative shoots and finally the biomass yield were reduced in some cultivars. Among tested cultivars different reaction for HM ions in polluted soil were noted: from only slightly modified parameters of photosynthesis and unreduced yield (Elytrigia elongata cv. Bamar and Arrhenatherum elatius cv. Wiwena to significantly reduced Fo, Fv, Fm and biomass yield (Bromus carinathus cv. Broma and Bromus

Improving the quality of perennial ryegrass (Lolium perenne L.) for dairy cows by selecting for fast clearing and/or degradable neutral detergent fiber

NARCIS (Netherlands)

Taweel, H.Z.; Tas, B.M.; Smit, H.J.; Elgersma, A.; Dijkstra, J.; Tamminga, S.

2005-01-01

Neutral detergent fiber (NDF) fractional clearance rate (Kcl) and fractional degradation rate (kd) of six varieties of perennial ryegrass were measured to examine the possibility of selecting for varieties with fast degradable NDF. The experiment was conducted in 2000 and repeated in 2001. In each

Freshwater Biogeography and Limnological Evolution of the Tibetan Plateau - Insights from a Plateau-Wide Distributed Gastropod Taxon (Radix spp.)

Science.gov (United States)

von Oheimb, Parm Viktor; Albrecht, Christian; Riedel, Frank; Du, Lina; Yang, Junxing; Aldridge, David C.; Bößneck, Ulrich; Zhang, Hucai; Wilke, Thomas

2011-01-01

Background The Tibetan Plateau is not only the highest and largest plateau on earth; it is also home to numerous freshwater lakes potentially harbouring endemic faunal elements. As it remains largely unknown whether these lakes have continuously existed during the Last Glacial Maximum (LGM), questions arise as to whether taxa have been able to exist on the plateau since before the latest Pleistocene, from where and how often the plateau was colonized, and by which mechanisms organisms conquered remote high altitude lentic freshwater systems. In this study, species of the plateau-wide distributed freshwater gastropod genus Radix are used to answer these biogeographical questions. Methodology/Principal Findings Based on a broad spatial sampling of Radix spp. on the Tibetan Plateau, and phylogenetic analyses of mtDNA sequence data, three probably endemic and one widespread major Radix clade could be identified on the plateau. Two of the endemic clades show a remarkably high genetic diversity, indicating a relatively great phylogenetic age. Phylogeographical analyses of individuals belonging to the most widely distributed clade indicate that intra-plateau distribution cannot be explained by drainage-related dispersal alone. Conclusions/Significance Our study reveals that Radix spp. persisted throughout the LGM on the Tibetan Plateau. Therefore, we assume the continuous existence of suitable water bodies during that time. The extant Radix diversity on the plateau might have been caused by multiple colonization events combined with a relatively long intra-plateau evolution. At least one colonization event has a Palaearctic origin. In contrast to freshwater fishes, passive dispersal, probably by water birds, might be an important mechanism for conquering remote areas on the plateau. Patterns found in Radix spp. are shared with some terrestrial plateau taxa, indicating that Radix may be a suitable model taxon for inferring general patterns of biotic origin, dispersal and

Phytochemical Profile and Qualification of Biological Activity of an Isolated Fraction of Bellis perennis

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Thiago H Costa Marques

2013-01-01

Full Text Available This study describes the isolation and identification of apigenin-7-O-ghicopyranoside, a flavonoid isolated from the flowers of Bellis perennis L., Asteraceae, an species with a broad spectrum of biological activities. The in vitro antioxidant activity and the inhibition of the enzyme acetylcholinesterase were evaluated. The flavonoid showed strong in vitro antioxidant potential, because of the capacity of removal of hydroxyl radicals and nitric oxide, and also prevented the formation of thiobarbituric acid-reactive substances. These parameters were inhibited at the highest concentration of ApG at rates of 77.7%, 72% and 73.4%, respectively, in addition to inhibiting acetylcholinesterase, suggesting potential use in the treatment of neurodegenerative diseases.

Temperature Effects on the Seed Germination of Some Perennial and Annual Species of Asteraceae Family

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Zarghani Hadi

2014-12-01

Full Text Available Temperature is the most critical factor determining success or failure of plant establishment. Seed germination response of five medicinal species include three seed-propagated perennial species, Cichorium intybus, cynara scolymus and Echinacea purpurea and vegetative-reproduction perennial species, Achillea millefolium and annual species, Matricaria aurea were assessed at constant temperatures. The seeds were exposed to constant temperatures of 5, 10, 15, 20, 25, 30, 35, 40 and 45°C under total darkness. Germination percentage of all the species were significantly affected by various temperatures (p ≤ 0.001. A. millefolium did not germinate at 5-10 and 35-45°C, but showed noticeable germination percentage (73.3-100% at temperatures ranged from 15-30° C. The highest total germination percentage was observed within the range of 15-35 °C for other species. Also, we calculated cardinal temperatures (the minimum, optimum and maximum temperature for seed germination of species. The highest value for minimum temperature was 10.07ºC in A. millefolium followed by C. scolymus and M. aurea (5ºC while the lowest was for E. purpurea and C. intybus (2.68 and 2.90ºC respectively. The lowest value for optimum temperature was detected in A. millefolium (22.72ºC and M. aurea (23.88°C while the maximum values were observed in E. purpurea and C. intybus (30.40ºC and 29.90ºC respectively. Based on results of present study we concluded that species with both vegetative and seed-propagated reproduction forms like A. millefolium had smaller temperature range rather those with just one way of reproduction (seed production.

Water deficit mechanisms in perennial shrubs Cerasus humilis leaves revealed by physiological and proteomic analyses.

Science.gov (United States)

Yin, Zepeng; Ren, Jing; Zhou, Lijuan; Sun, Lina; Wang, Jiewan; Liu, Yulong; Song, Xingshun

2016-01-01

Drought (Water deficit, WD) poses a serious threat to extensively economic losses of trees throughout the world. Chinese dwarf cherry ( Cerasus humilis ) is a good perennial plant for studying the physiological and sophisticated molecular network under WD. The aim of this study is to identify the effect of WD on C. humilis through physiological and global proteomics analysis and improve understanding of the WD resistance of plants. Currently, physiological parameters were applied to investigate C. humilis response to WD. Moreover, we used two-dimensional gel electrophoresis (2DE) to identify differentially expressed proteins in C. humilis leaves subjected to WD (24 d). Furthermore, we also examined the correlation between protein and transcript levels. Several physiological parameters, including relative water content and Pn were reduced by WD. In addition, the malondialdehyde (MDA), relative electrolyte leakage (REL), total soluble sugar, and proline were increased in WD-treated C. humilis . Comparative proteomic analysis revealed 46 protein spots (representing 43 unique proteins) differentially expressed in C. humilis leaves under WD. These proteins were mainly involved in photosynthesis, ROS scavenging, carbohydrate metabolism, transcription, protein synthesis, protein processing, and nitrogen and amino acid metabolisms, respectively. WD promoted the CO 2 assimilation by increase light reaction and Calvin cycle, leading to the reprogramming of carbon metabolism. Moreover, the accumulation of osmolytes (i.e., proline and total soluble sugar) and enhancement of ascorbate-glutathione cycle and glutathione peroxidase/glutathione s-transferase pathway in leaves could minimize oxidative damage of membrane and other molecules under WD. Importantly, the regulation role of carbohydrate metabolisms (e. g. glycolysis, pentose phosphate pathways, and TCA) was enhanced. These findings provide key candidate proteins for genetic improvement of perennial plants metabolism under

Temperature profile data from XBT casts in a world wide distribution from multiple platforms from 04 September 2002 to 18 November 2002 (NODC Accession 0000831)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using CTD casts from LYKES COMMANDER and other platforms in a world wide distribution from 04 September 2002 to 18 November...

Marine: a new wide range neutron monitoring system concept

Energy Technology Data Exchange (ETDEWEB)

Trama, J.C.; Lescop, B.; Lefevre, J.; Nguyen, T.; Sudres, C. [CEA Saclay, 91 - Gif sur Yvette (France). Dept. d' Electronique et d' Instrumentation Nucleaire; Pasdeloup, P. [Technicatome, 13 - Les Milles (France)

2001-07-01

In a Nuclear Power Plant, the developed power is proportional to the emitted neutron flux. The 10 to 11 decades measurement range from source to power generally needs 3 distinct neutron measurement chains to be monitored. A wide range neutron monitoring system may cover this range with only one sensor followed by adequate electronics. In the past this concept has been developed with an analogue technology which was presenting some drawbacks (slow log amplifier, components perenniality). In this paper, we introduce a completely new design, that makes use of a recent technology, including full linear input electronics, and advanced digital signal processing. As far as the sensor is concerned, both a well known commercial fission chamber, or an innovative wide range sensor presenting a high sensitivity may be used. The basic concept is that the single signal is continuously processed by three different electronic stages, each one being dedicated to approximately one third of the full range: pulse, Campbelling and current modes. After amplification, appropriate shaping, this signal is numerically filtered by a Kalman filter algorithm to compute the neutron flux as well as the reactor period. A specifically developed test module allows the surveillance of the sensor and the electronics via stimuli injections and characteristic curves plotting. A computerised simulation of the whole chain is used to validate the signal processing algorithms evolutions. In the paper we will specifically develop the metrological performances of this chain and the general agreement that exists between simulated and measured values. (authors)

Predicting seed yield in perennial ryegrass using repeated canopy reflectance measurements and PLSR

DEFF Research Database (Denmark)

Gislum, René; Deleuran, Lise Christina; Boelt, Birte

2009-01-01

with first year seed crops using three sowing rates and three spring nitrogen (N) application rates. PLSR models were developed for each year and showed correlation coefficients of 0.71, 0.76, and 0.92, respectively. Regression coefficients showed in these experiments that the optimum time for canopy...... reflectance measurements was from approximately 600 cumulative growing degree-days (CGDD) to approximately 900 CGDD. This is the period just before and at heading of the seed crop. Furthermore, regression coefficients showed that information about N and water is important. The results support the development......Repeated canopy reflectance measurements together with partial least-squares regression (PLSR) were used to predict seed yield in perennial ryegrass (Lolium perenne L.). The measurements were performed during the spring and summer growing seasons of 2001 to 2003 in three field experiments...

Temperature profile data from XBT casts in a world wide distribution from multiple platforms from 20 February 2003 to 24 April 200 (NODC Accession 0001019)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using CTD casts from LYKES RAIDER and other platforms in a world wide distribution from 20 February 2003 to 24 April 2003....

Temperature profile data from XBT casts from MULTIPLE PLATFORMS from a World-Wide distribution from 02 January 1990 to 31 December 1995 (NODC Accession 0001268)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from MULTIPLE PLATFORMS from a World-Wide distribution from 02 January 1990 to 31 December 1995. Data were submitted by the UK Hydrographic...

Effect of cigarette smoke on counts of immunoreactive cells to eotaxin-1 and eosinophils on the nasal mucosa in young patients with perennial allergic rhinitis.

Science.gov (United States)

Montaño-Velázquez, Bertha Beatriz; Flores-Rojas, Eulalia Beatriz; García-Vázquez, Francisco Javier; Jurado-Hernandez, Silvio; Venancio Hernández, Marco Antonio; Alanis Flores, Angélica Kathya; Jáuregui-Renaud, Kathrine

In teenagers with perennial allergic rhinitis, exposure to tobacco cigarette smoke increases the count of eosinophils in the nasal mucosa; the recruitment of eosinophils arises from the combined action of a number of cellular and molecular signals, including eotaxin. To assess the effect of exposure to tobacco cigarette smoke on the count of immunoreactive cells to eotaxin-1 and eosinophils on the nasal mucosa of children and teenagers with perennial allergic rhinitis. In a cross-sectional study, forty-four patients were evaluated (aged 7-19 years old): 22 with and 22 with no exposure to tobacco cigarette smoke. After replying to 2 validated questionnaires, on Asthma and Allergies in Childhood and on the severity of nasal symptoms, nasal mucosal samples were obtained by scraping the middle one-third of the inferior turbinates. Then counts of immunoreactive cells to eotaxin-1 and eosinophils were assessed by immunohistochemistry. Patients with exposure to tobacco cigarette smoke showed higher cell counts of both eotaxin-1 and eosinophils than patients with no exposure to the smoke, with no correlation between the two variables. However, both counts, of eotaxin-1 and eosinophils, were related to the cotinine/creatinine ratio. Exposure to tobacco cigarette smoke can increase eotaxin-1 and the count of eosinophils in the nasal mucosa of young patients with perennial allergic rhinitis. Copyright © 2016 Associação Brasileira de Otorrinolaringologia e Cirurgia Cérvico-Facial. Published by Elsevier Editora Ltda. All rights reserved.

Characterization of replication and conjugation of plasmid pWTY27 from a widely distributed Streptomyces species

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Wang Tao

2012-11-01

Full Text Available Abstract Background Streptomyces species are widely distributed in natural habitats, such as soils, lakes, plants and some extreme environments. Replication loci of several Streptomyces theta-type plasmids have been reported, but are not characterized in details. Conjugation loci of some Streptomyces rolling-circle-type plasmids are identified and mechanism of conjugal transferring are described. Results We report the detection of a widely distributed Streptomyces strain Y27 and its indigenous plasmid pWTY27 from fourteen plants and four soil samples cross China by both culturing and nonculturing methods. The complete nucleotide sequence of pWTY27 consisted of 14,288 bp. A basic locus for plasmid replication comprised repAB genes and an adjacent iteron sequence, to a long inverted-repeat (ca. 105 bp of which the RepA protein bound specifically in vitro, suggesting that RepA may recognize a second structure (e.g. a long stem-loop of the iteron DNA. A plasmid containing the locus propagated in linear mode when the telomeres of a linear plasmid were attached, indicating a bi-directional replication mode for pWTY27. As for rolling-circle plasmids, a single traA gene and a clt sequence (covering 16 bp within traA and its adjacent 159 bp on pWTY27 were required for plasmid transfer. TraA recognized and bound specifically to the two regions of the clt sequence, one containing all the four DC1 of 7 bp (TGACACC and one DC2 (CCCGCCC and most of IC1, and another covering two DC2 and part of IC1, suggesting formation of a high-ordered DNA-protein complex. Conclusions This work (i isolates a widespread Streptomyces strain Y27 and sequences its indigenous theta-type plasmid pWTY27; (ii identifies the replication and conjugation loci of pWTY27 and; (iii characterizes the binding sequences of the RepA and TraA proteins.

Characterization of replication and conjugation of plasmid pWTY27 from a widely distributed Streptomyces species

Science.gov (United States)

2012-01-01

Background Streptomyces species are widely distributed in natural habitats, such as soils, lakes, plants and some extreme environments. Replication loci of several Streptomyces theta-type plasmids have been reported, but are not characterized in details. Conjugation loci of some Streptomyces rolling-circle-type plasmids are identified and mechanism of conjugal transferring are described. Results We report the detection of a widely distributed Streptomyces strain Y27 and its indigenous plasmid pWTY27 from fourteen plants and four soil samples cross China by both culturing and nonculturing methods. The complete nucleotide sequence of pWTY27 consisted of 14,288 bp. A basic locus for plasmid replication comprised repAB genes and an adjacent iteron sequence, to a long inverted-repeat (ca. 105 bp) of which the RepA protein bound specifically in vitro, suggesting that RepA may recognize a second structure (e.g. a long stem-loop) of the iteron DNA. A plasmid containing the locus propagated in linear mode when the telomeres of a linear plasmid were attached, indicating a bi-directional replication mode for pWTY27. As for rolling-circle plasmids, a single traA gene and a clt sequence (covering 16 bp within traA and its adjacent 159 bp) on pWTY27 were required for plasmid transfer. TraA recognized and bound specifically to the two regions of the clt sequence, one containing all the four DC1 of 7 bp (TGACACC) and one DC2 (CCCGCCC) and most of IC1, and another covering two DC2 and part of IC1, suggesting formation of a high-ordered DNA-protein complex. Conclusions This work (i) isolates a widespread Streptomyces strain Y27 and sequences its indigenous theta-type plasmid pWTY27; (ii) identifies the replication and conjugation loci of pWTY27 and; (iii) characterizes the binding sequences of the RepA and TraA proteins. PMID:23134842

Temperature profile data from XBT casts in a world wide distribution from multiple platforms from 02 April 2003 to 21 May 2003 (NODC Accession 0001042)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT casts from SEA-LAND DEFENDER and other platforms in a world wide distribution from 02 April 2003 to 21 May 2003....

Distribution of throughfall and stemflow in multi-strata agroforestry, perennial monoculture, fallow and primary forest in central Amazonia, Brazil

Science.gov (United States)

Schroth, Götz; Ferreira da Silva, Luciana; Wolf, Marc-Andree; Geraldes Teixeira, Wenceslau; Zech, Wolfgang

1999-07-01

The partitioning of rain water into throughfall, stemflow and interception loss when passing through plant canopies depends on properties of the respective plant species, such as leaf area and branch angles. In heterogeneous vegetation, such as tropical forest or polycultural systems, the presence of different plant species may consequently result in a mosaic of situations with respect to quantity and quality of water inputs into the soil. As these processes influence not only the water availability for the plants, but also water infiltration and nutrient leaching, the understanding of plant effects on the repartitioning of rain water may help in the optimization of land use systems and management practices. We measured throughfall and stemflow in a perennial polyculture (multi-strata agroforestry), monocultures of peach palm (Bactris gasipaes) for fruit and for palmito, a monoculture of cupuaçu (Theobroma grandiflorum), spontaneous fallow and primary forest during one year in central Amazonia, Brazil. The effect on rain water partitioning was measured separately for four useful tree species in the polyculture and for two tree species in the primary forest. Throughfall at two stem distances, and stemflow, differed significantly between tree species, resulting in pronounced spatial patterns of water input into the soil in the polyculture system. For two tree species, peach palm for fruit (Bactris gasipaes) and Brazil nut trees (Bertholletia excelsa), the water input into the soil near the stem was significantly higher than the open-area rainfall. This could lead to increased nutrient leaching when fertilizer is applied close to the stem of these trees. In the primary forest, such spatial patterns could also be detected, with significantly higher water input near a palm (Oenocarpus bacaba) than near a dicotyledonous tree species (Eschweilera sp.). Interception losses were 6·4% in the polyculture, 13·9 and 12·3% in the peach palm monocultures for fruit and for

Temperature and other data from XBT and MBT casts in a world-wide distribution from 06 March 1958 to 01 April 1958 (NODC Accession 0000336)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature and other data were collected using XBT and MBT casts in a world-wide distribution from March 6, 1958 to April 1, 1958. Data were submitted by Duetsches...

Charged-particle multiplicity distributions over a wide pseudorapidity range in proton-proton collisions at root s=0.9, 7, and 8 TeV

NARCIS (Netherlands)

Acharya, S.; Adamova, D.; Adolfsson, J.; Aggarwal, M. M.; AglieriRinella, G.; Agnello, M.; Agrawal, N.; Ahammed, Z.; Ahmad, N.; Ahn, S. U.; Aiola, S.; Akindinov, A.; Alam, S. N.; Alba, J. L. B.; Albuquerque, D. S. D.; Aleksandrov, D.; Alessandro, B.; AlfaroMolina, R.; Alici, A.; Alkin, A.; Alme, J.; Alt, T.; Altenkamper, L.; Altsybeev, I.; Alves GarciaPrado, C.; Janssen, M M; Andrei, C.; Andreou, D.; Andrews, H. A.; Andronic, A.; Anguelov, V.; Anson, C. D.; Anticic, T.; Antinori, F.; Antonioli, P.; Anwar, R.; Aphecetche, L.; Appelshaeuser, H.; Arcelli, S.; Arnaldi, R.; Arnold, O. W.; Arsene, I. C.; Arslandok, M.; Audurier, B.; Augustinus, A.; Averbeck, R.; Azmi, M. D.; Badala, A.; Baek, Y. W.; Bagnasco, S.; Bailhache, R.; Bala, R.; Baldisseri, A.; Ball, M.C.; Baral, R. C.; Barbano, A. M.; Barbera, R.; Barile, F.; Barioglio, L.; Barnafoldi, G. G.; Barnby, L. S.; Barret, V.; Bartalini, P.; Barth, K.; Bartsch, E.; Basile, M.; Bastid, N.; Basu, S.; Bathen, B.; Batigne, G.; Camejo, A. Batista; Batyunya, B.; Batzing, P. C.; Bearden, I. G.; Beck, H.; Bedda, C.; Behera, N. K.; Belikov, I.; Bellini, F.; Bello Martinez, H.; Bellwied, R.; Beltran, L. G. E.; Belyaev, V.; Bencedi, G.; Beole, S.; Bercuci, A.; Berdnikov, Y.; Berenyi, D.; Bertens, R. A.; Berzano, D.; Betev, L.; Bhasin, A.; Bhat, I. R.; Bhati, A. K.; Bhattacharjee, B.; Bhom, J.; Bianchi, L.; Bianchi, N.; Bianchin, C.; Bielcik, J.; Bielcikova, J.; Bilandzic, A.; Biswas, R.; Biswas, S.; Blair, J. T.; Blau, D.; Blume, C.; Boca, G.; Bock, F.; Bogdanov, A.; Boldizsar, L.; Bombara, M.; Bonomi, G.; Bonora, M.; Book, J.; Borel, H.; Borissov, A.; Borri, M.; Botta, E.; Bourjau, C.; Braun-Munzinger, P.; Bregant, M.; Broker, T. A.; Browning, T. A.; Broz, M.; Brucken, E. J.; Bruna, E.; Bruno, G. E.; Budnikov, D.; Buesching, H.; Bufalino, S.; Buhler, P.; Buncic, P.; Busch, O.; Buthelezi, Z.; Butt, J. B.; Buxton, J. T.; Cabala, J.; Caffarri, D.; Caines, H.; Caliva, A.; Calvo Villar, E.; Camerini, P.; Capon, A. A.; Carena, F.; Carena, W.; Carnesecchi, F.; Castellanos, J. Castillo; Castro, A. J.; Casula, E. A R; Ceballos Sanchez, C.; Cerello, P.; Chandra, S.; Chang, B.; Chapeland, S.; Chartier, M.; Charvet, J. L.; Chattopadhyay, S.; Chattopadhyay, S.; Chauvin, A.; Cherney, M.; Cheshkov, C.; Cheynis, B.; Barroso, V. Chibante; Chinellato, D. D.; Cho, Sukhee; Chochula, P.; Choi, K.; Chojnacki, M.; Choudhury, S.; Chowdhury, T.; Christakoglou, P.; Christensen, C. H.; Christiansen, P.; Chujo, T.; Chung, S. U.; Cicalo, C.; Cifarelli, L.; Cindolo, F.; Cleymans, J.; Colamaria, F.; Colella, D.; Collu, A.; Colocci, M.; Concas, M.; Balbastre, G. Conesa; Del Valle, Z. Conesa; Connors, M. E.; Contreras, J. G.; Cormier, T. M.; Morales, Y. Corrales; Cortes Maldonado, I.; Cortese, P.; Cosentino, M. R.; Costa, F.; Costanza, S.; Crkovska, J.; Crochet, P.; Cuautle, E.; Cunqueiro, L.; Dahms, T.; Dainese, A.; Danisch, M. C.; Danu, A.; Das, D.; Das, I.; Das, S.; Dash, A.; Dash, S.; Dasgupta, S. S.; DeCaro, A.; De Cataldo, G.; De Conti, C.; De Cuveland, J.; De Falco, A.; De Gruttola, D.; De Marco, N.; De Pasquale, S.; De Souza, R. Derradi; Degenhardt, H. F.; Deisting, A.; Deloff, A.; Deplano, C.; Dhankher, P.; Di Bari, D.; Di Mauro, A.; Di Nezza, P.; Di Ruzza, B.; Diakonov, I.; Diaz Corchero, M. A.; Dietel, T.; Dillenseger, P.; Divia, R.; Djuvsland, O.; Dobrin, A.; Domenicis Gimenez, D.; Doenigus, B.; Dordic, O.; Doremalen, L. V. V.; Drozhzhova, T.; Dubey, A. K.; Dubla, A.; Ducroux, L.; Duggal, A. K.; Dupieux, P.; Ehlers, R. J.; Elia, D.; Endress, E.; Engel, H.; Epple, E.; Erazmus, B.; Erhardt, F.; Espagnon, B.; Esumi, S.; Eulisse, G.; Eum, J.; Evans, D.; Evdokimov, S.; Fabbietti, L.; Faivre, J.; Fantoni, A.; Fasel, M.; Feldkamp, L.; Feliciello, A.; Feofilov, G.; Ferencei, J.; FernandezTellez, A.; Ferreiro, E. G.; Ferretti, A.; Festanti, A.; Feuillard, V. J. G.; Figiel, J.; Figueredo, M. A S; Filchagin, S.; Finogeev, D.; Fionda, F. M.; Fiore, E. M.; Floris, M.; Foertsch, S.; Foka, P.; Fokin, S.; Fragiacomo, E.; Francescon, A.; De Francisco, A.; Frankenfeld, U.; Fronze, G. G.; Fuchs, U.; Furget, C.; Furs, A.; Girard, M. Fusco; Gaardhoje, J. J.; Gagliardi, M.; Gago, A. M.; Gajdosova, K.; Gallio, M.; Galvan, C. D.; Ganoti, P.; Gao, C.; Garabatos, C.; Garcia-Solis, E.; Garg, K.; Garg, P.; Gargiulo, C.; Gasik, P.; Gauger, E. F.; Ducati, M. B. Gay; Germain, M.; Ghosh, J.; Ghosh, P.; Ghosh, S. K.; Gianotti, P.; Giubellino, P.; Giubilato, P.; Gladysz-Dziadus, E.; Glaessel, P.; GomezCoral, D. M.; Ramirez, A. Gomez; Gonzalez, A. S.; Gonzalez, V; Gonzalez-Zamora, P.; Gorbunov, S.; Goerlich, L.; Gotovac, S.; Grabski, V.; Graczykowski, L. K.; Graham, K. L.; Greiner, L. C.; Grelli, A.; Grigoras, C.; Grigoriev, V.; Grigoryan, A.; Guber, F.; Guernane, R.; Guerzoni, B.; Gulbrandsen, K.; Gunji, T.; Gupta, A.; Gupta, R.; Guzman, I. B.; Haake, R.; Hadjidakis, C.; Hamagaki, H.; Hamar, G.; Hamon, J. C.; Harris, J. W.; Harton, A.; Hasan, H.; Hatzifotiadou, D.; Hayashi, S.; Heckel, S. T.; Hellbaer, E.; Helstrup, H.; Herghelegiu, A.; HerreraCorral, G.; Herrmann, F.; Hess, B. A.; Hetland, K. F.; Hillemanns, H.; Hills, C.; Hippolyte, B.; Hladky, J.; Hohlweger, B.; Horak, D.; Sorkine-Hornung, Olga; Hosokawa, R.; Hristov, P.; Hughes, C.W.; Humanic, T. J.; Hussain, N.; Hussain, T.; Hutter, D.; Hwang, D. S.; Iga Buitron, S. A.; Ilkaev, R.; Inaba, M.; Ippolitov, M.; Irfan, M.; Isakov, V.; Ivanov, M.; Ivanov, V.; Izucheev, V.; Jacak, B.; Jacazio, N.; Jacholkowski, A.; Jacobs, P. M.; Jadhav, M. B.; Jadlovska, S.; Jadlovsky, J.; Jaelani, S.; Jahnke, C.; Jakubowska, M. J.; Janik, M. A.; Jayarathna, P. H S Y; Jena, C.; Jena, S.; Jeric, M.; Bustamante, R. T Jimenez; Jones, P. G.; Jusko, A.; Kalinak, P.; Kalweit, A.; Kang, J. H.; Kaplin, V.; Kar, S.; Uysal, A. Karasu; Karavichev, O.; Karavicheva, T.; Karayan, L.; Karpechev, E.; Kebschull, U.; Keidel, R.; Keijdener, D. L. D.; Keil, M.; Ketzer, B.; Khan, P.M.; Khan, Shfaqat A.; Khanzadeev, A.; Kharlov, Y.; Khatun, A.; Khuntia, A.; Kielbowicz, M. M.; Kileng, B.; Kim, D.-S.; Kim, D. W.; Kim, D. J.; Kim, H.; Kim, J. S.; Kim, J.; Kim, M.; Kim, M.; Kim, S.; Kim, T.; Kirsch, S.; Kisel, I.; Kiselev, S.; Kisiel, A.; Kiss, G.; Klay, J. L.; Klein, C; Klein, J.; Klein-Boeing, C.; Klewin, S.; Kluge, A.; Knichel, M. L.; Knospe, A. G.; Kobdaj, C.; Kofarago, M.; Kollegger, T.; Kolojvari, A.; Kondratiev, V.; Kondratyeva, N.; Kondratyuk, E.; Konevskikh, A.; Konyushikhin, M.; Kopcik, M.; Kour, M.; Kouzinopoulos, C.; Kovalenko, O.; Kovalenko, V.; Kowalski, M.L.; Meethaleveedu, G. Koyithatta; Kralik, I.; Kravcakova, A.; Krivda, M.; Krizek, F.; Kryshen, E.; Krzewicki, M.; Kubera, A. M.; Kucera, V.; Kuhn, C.; Kuijer, P. G.; Kumar, A.; Kumar, J.; Kumar, L.; Kumar, S.; Kundu, Seema; Kurashvili, P.; Kurepin, A.; Kurepin, A. B.; Kuryakin, A.; Kushpil, S.; Kweon, M. J.; Kwon, Y.; La Pointe, S. L.; La Rocca, P.; Lagana Fernandes, C.; Lai, Y. S.; Lakomov, I.; Langoy, R.; Lapidus, K.; Lara, C.; Lardeux, A.; Lattuca, A.; Laudi, E.; Lavicka, R.; Lazaridis, L.; Lea, R.; Leardini, L.; Lee, S.; Lehas, F.; Strunz-Lehner, Christine; Lehrbach, J.; Lemmon, R. C.; Lenti, V.; Leogrande, E.; Leon Monzon, I.; Levai, P.; Li, S.; Li, X.; Lien, J.; Lietava, R.; Lim, B.; Lindal, S.; Lindenstruth, V.; Lindsay, S. W.; Lippmann, C.; Lisa, M. A.; Litichevskyi, V.; Ljunggren, H. M.; Llope, W. J.; Lodato, D. F.; Loenne, P. I.; Loginov, V.; Loizides, C.; Loncar, P.; Lopez, X.; Lopez Torres, E.; Lowe, A.; Luettig, P.; Lunardon, M.; Luparello, G.; Lupi, M.; Lutz, T. H.; Maevskaya, A.; Mager, M.; Mahajan, S.; Mahmood, S. M.; Maire, A.; Majka, R. D.; Malaev, M.; Malinina, L.; Mal'kevich, D.; Malzacher, P.; Mamonov, A.; Manko, V.; Manso, F.; Manzari, V.; Mao, Y.; Marchisone, M.; Mares, J.; Margagliotti, G. V.; Margotti, A.; Margutti, J.; Marin, A.; Markert, C.; Marquard, M.; Martin, N. A.; Martinengo, P.; Martinez, J. A. L.; Martinez, M. I.; Garcia, G. Martinez; Pedreira, M. Martinez; Mas, A.; Masciocchi, S.; Masera, M.; Masoni, A.; Masson, E.; Mastroserio, A.; Mathis, A. M.; Matyja, A.; mayer, C.; Mazer, J.; Mazzilli, M.; Mazzoni, M. A.; Meddi, F.; Melikyan, Y.; Menchaca-Rocha, A.; Meninno, E.; Mercado Perez, J.; Meres, M.; Mhlanga, S.; Miake, Y.; Mieskolainen, M. M.; Mihaylov, D. L.; Mihaylov, D. L.; Milano, L.; Milosevic, J.; Mischke, A.; Mishra, A. N.; Miskowiec, D.; Mitra, J.; Mitu, C. M.; Mohammadi, N.; Mohanty, B.; Khan, M. Mohisin; Montes, E.; De Godoy, D. A Moreira; Moreno, L. A. P.; Moretto, S.; Morreale, A.; Morsch, A.; Muccifora, V.; Mudnic, E.; Muehlheim, D.; Muhuri, S.; Mukherjee, M.; Mulligan, J. D.; Munhoz, M. G.; Muenning, K.; Munzer, R. H.; Murakami, H.; Murray, S.; Musa, L.; Musinsky, J.; Myers, C. J.; Myrcha, J. W.; Naik, B.; Nair, Rajiv; Nandi, B. K.; Nania, R.; Nappi, E.; Narayan, A.; Naru, M. U.; daLuz, H. Natal; Nattrass, C.; Navarro, S. R.; Nayak, K.; Nayak, R.; Nayak, T. K.; Nazarenko, S.; Nedosekin, A.; De Oliveira, R. A. Negrao; Nellen, L.; Nesbo, S. V.; Ng, F.; Nicassio, M.; Niculescu, M.; Niedziela, J.; Nielsen, B. S.; Nikolaev, S.; Nikulin, S.; Nikulin, V.; Nobuhiro, A.; Noferini, F.; Nomokonov, P.; Nooren, G.; Noris, J. C. C.; Norman, J.; Nyanin, A.; Nystrand, J.; Oeschler, H.; Oh, S.; Ohlson, A.; Okubo, T.; Olah, L.; Oleniacz, J.; Oliveira Da Silva, A. C.; Oliver, M. H.; Onderwaater, J.; Oppedisano, C.; Orava, R.; Oravec, M.; Ortiz Velasquez, A.; Oskarsson, A.; Otwinowski, J.; Oyama, K.; Pachmayer, Y.; Pacik, V.; Pagano, D.; Pagano, P.; Paic, G.; Palni, P.; Pan, J.; Pandey, A. K.; Panebianco, S.; Papikyan, V.; Pappalardo, G. S.; Pareek, P.; Park, J.; Parmar, S.; Passfeld, A.; Pathak, S. P.; Paticchio, V.; Patra, R. N.; Paul, B.; Pei, H.; Peitzmann, T.; Peng, X.; Pereira, L. G.; Da Costa, H. Pereira; Peresunko, D.; Lezama, E. Perez; Peskov, V.; Pestov, Y.; Petracek, V.; Petrov, V.; Petrovici, M.; Petta, C.; Pezzi, R. P.; Piano, S.; Pikna, M.; Pillot, P.; Pimentel, L. O. D. L.; Pinazza, O.; Pinsky, L.; Piyarathna, D. B.; Ploskon, M.; Planinic, M.; Pliquett, F.; Pluta, J.; Pochybova, S.; Podesta-Lerma, P. L M; Poghosyan, M. G.; Polichtchouk, B.; Poljak, N.; Poonsawat, W.; Pop, A.; Poppenborg, H.; Porteboeuf-Houssais, S.; Porter, J.; Pozdniakov, V.; Prasad, S. K.; Preghenella, R.; Prino, F.; Pruneau, C. A.; Pshenichnov, I.; Puccio, M.; Puddu, G.; Pujahari, P.; Punin, V.; Putschke, J.; Rachevski, A.; Raha, S.; Rajput, S.; Rak, J.; Rakotozafindrabe, A.; Ramello, L.; Rami, F.; Rana, D. B.; Raniwala, R.; Raniwala, S.; Rasanen, S. S.; Rascanu, B. T.; Rathee, D.; Ratza, V.; Ravasenga, I.; Read, K. F.; Redlich, K.; Rehman, A.; Reichelt, P.; Reidt, F.; Ren, X.; Renfordt, R.; Reolon, A. R.; Reshetin, A.; Reygers, K.; Riabov, V.; Ricci, R. A.; Richert, T.; Richter, M.; Riedler, P.; Riegler, W.; Riggi, F.; Ristea, C.; Rodriguez Cahuantzi, M.; Roed, K.; Rogochaya, E.; Rohr, D.; Rohrich, D.; Rokita, P. S.; Ronchetti, F.; Rosnet, P.; Rossi, A.; Rotondi, A.; Roukoutakis, F.; Roy, A.; Roy, C.; Roy, P.; Rubio Montero, A. J.; Rueda, O. V.; Rui, R.; Russo, R.; Rustamov, A.; Ryabinkin, E.; Ryabov, Y.; Rybicki, A.; Saarinen, S.; Sadhu, S.; Sadovsky, S.; Safarik, K.; Saha, S. K.; Sahlmuller, B.; Sahoo, B.; Sahoo, P.; Sahoo, R.; Sahoo, S.; Sahu, P. K.; Saini, J.; Sakai, S.; Saleh, M. A.; Salzwedel, J.; Sambyal, S.; Samsonov, V.; Sandoval, A.; Sarkar, D.; Sarkar, N.; Sarma, P.; Sas, M. H. P.; Scapparone, E.; Scarlassara, F.; Scharenberg, R. P.; Scheid, H. S.; Schiaua, C.; Schicker, R.; Schmidt, C.; Schmidt, H. R.; Schmidt, M. O.; Schmidt, M.; Schuchmann, S.; Schukraft, J.; Schutz, Y.; Schwarz, K.; Schweda, K.; Scioli, G.; Scomparin, E.; Scott, R.; Sefcik, M.; Seger, J. E.; Sekiguchi, Y.; Sekihata, D.; Selyuzhenkov, I.; Senosi, K.; Senyukov, S.; Serradilla, E.; Sett, P.; Sevcenco, A.; Shabanov, A.; Shabetai, A.; Shahoyan, R.; Shaikh, W.; Shangaraev, A.; Sharma, A.; Sharma, A.; Sharma, M.; Sharma, M.; Sharma, N.; Sheikh, A. I.; Shigaki, K.; Shou, Q. Y.; Shtejer, K.; Sibiriak, Y.; Siddhanta, S.; Sielewicz, K. M.; Siemiarczuk, T.; Silvermyr, D.; Silvestre, C.; Simatovic, G.; Simonetti, G.; Singaraju, R.; Singh, R; Singhal, V.; Sinha, T.; Sitar, B.; Sitta, M.; Skaali, T. B.; Slupecki, M.; Smirnov, N.; Snellings, R. J. M.; Snellman, T. W.; Song, J.; Song, M.; Soramel, F.; Sorensen, S.; Sozzi, F.; Spiriti, E.; Sputowska, I.; Srivastava, B. K.; Stachel, J.; Stan, I.; Stankus, P.; Stenlund, E.; Stocco, D.; Strmen, P.; Suaide, A. A P; Sugitate, T.; Suire, C.; Suleymanov, M.; Suljic, M.; Sultanov, R.; Sumbera, M.; Sumowidagdo, S.; Suzuki, K.; Swain, S.; Szabo, A.; Szarka, I.; Szczepankiewicz, A.; Tabassam, U.; Takahashi, J.; Tambave, G. J.; Tanaka, N.; Tarhini, M.; Tariq, M.; Tarzila, M. G.; Tauro, A.; Tejeda Munoz, G.; Telesca, A.; Terasaki, K.; Terrevoli, C.; Teyssier, B.; Thakur, D.; Thakur, J. S.; Thomas, D.; Tieulent, R.; Tikhonov, A.; Timmins, A. R.; Toia, A.; tripathy, S.; Trogolo, S.; Trombetta, G.; Tropp, Linda; Trubnikov, V.; Trzaska, W. H.; Trzeciak, B. A.; Tsuji, T.; Tumkin, A.; Turrisi, R.; Tveter, T. S.; Ullaland, K.; Umaka, E. N.; Uras, A.; Usai, G. L.; Utrobicic, A.; Vala, M.; Van der Maarel, J.; Van Hoorne, J. W.; van Leeuwen, M.; Vanat, T.; Vyvre, P. Vande; Varga, D.; Vargas, A.; Vargyas, M.; Varma, R.; Vasileiou, M.; Vasiliev, A.; Vauthier, A.; Doce, O. Vazquez; Vechernin, V.; Veen, A. M.; Velure, A.; Vercellin, E.; Vergara Limon, S.; Vernet, R.; Vertesi, R.; Vickovic, L.; Vigolo, S.; Viinikainen, J.; Vilakazi, Z.; Baillie, O. Villalobos; Villatoro Tello, A.; Vinogradov, A.; Vinogradov, L.; Virgili, T.; Vislavicius, V.; Vodopyanov, A.; Voelkl, M. A.; Voloshin, K.; Voloshin, S. A.; Volpe, G.; Haller, B.; Vorobyev, I.; Voscek, D.; Vranic, D.; Vrlakova, J.; Wagner, B.; Wagner, J.; Wang, H.; Wang, M.; Watanabe, D.; Watanabe, Y.; Weber, M.; Weber, S. G.; Weiser, D. F.; Wenzel, S. C.; Wessels, J. P.; Westerhoff, U.; Whitehead, A. M.; Wiechula, J.; Wikne, J.; Wilk, G.; Wilkinson, J.; Willems, G. A.; Williams, M. C S; Willsher, E.; Windelband, B.; Witt, W. E.; Yalcin, S.; Yamakawa, K.; Yang, P.; Yano, S.; Yin, Z.; Yokoyama, H.; Yoo, I. K.; Yoon, J. H.; Yurchenko, V.; Zaccolo, V.; Zaman, A.; Zampolli, C.; Zanoli, H. J. C.; Zardoshti, N.; Zarochentsev, A.; Zavada, P.; Zaviyalov, N.; Zbroszczyk, H.; Zhalov, M.; Zhang, H.; Zhang, X.; Zhang, Y.; Zhang, C.; Zhang, Z.; Zhao, C.; Zhigareva, N.; Zhou, D.; Zhou, Y.; Zhou, Z.; Zhu, H.; Zhu, J.; Zhu, X.; Zichichi, A.; Zimmermann, A.; Zimmermann, M. B.; Zinovjev, G.; Zmeskal, J.; Zou, Shui

2017-01-01

We present the charged-particle multiplicity distributions over a wide pseudorapidity range ( −3.4<η<5.0 ) for pp collisions at s√=0.9,7 , and 8 TeV at the LHC. Results are based on information from the Silicon Pixel Detector and the Forward Multiplicity Detector of ALICE, extending the

DIMENSIONS OF CARCASS AND INTERNAL ORGANS IN YOUNG SHEEP, UNDER CONDITIONS OF GRAZING ON ASSOCIATIONS OF PERENNIAL GRAMINACEOUS AND LEGUME

Directory of Open Access Journals (Sweden)

N. DRAGOMIR

2009-05-01

Full Text Available The temporary pastures’ floristic structure influences directly the growth and development of young sheep during grazing. The associations, beside the graminaceous and perennial legume species (white clover and birdsfoot trefoil, contribute mostly to the increase of carcass dimension and organ weight. The quality of the forage from such a pasture, better balanced in terms of energy and protein, influences all growth and development parameters in young sheep.

Temperature profile data collected using XBT casts from multiple platforms in a world wide distribution from 07 November 2001 to 24 July 2002 (NODC Accession 0000762)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT casts from OLEANDER, TAI HE, SEA-LAND ENTERPRISE, and other platforms in a world wide distribution. Data were...

Holocene climate variability and anthropogenic impacts from Lago Paixban, a perennial wetland in Peten, Guatemala

Science.gov (United States)

Wahl, David B.; Hansen, Richard D.; Byrne, Roger; Anderson, Lysanna; Schreiner, T.

2016-01-01

Analyses of an ~ 6 m sediment core from Lago Paixban in Peten, Guatemala, document the complex evolution of a perennial wetland over the last 10,300 years. The basal sediment is comprised of alluvial/colluvial fill deposited in the early Holocene. The absence of pollen and gastropods in the basal sediments suggests intermittently dry conditions until ~ 9000 cal yr. BP (henceforth BP) when the basin began to hold water perennially. Lowland tropical forest taxa dominated the local vegetation at this time. A distinct band of carbonate dating to ~ 8200 BP suggests regionally dry conditions, possibly associated with the 8.2 ka event. Wetter conditions during the Holocene Thermal Maximum are indicated by evidence of a raised water level and an open water lake. The timing of this interval coincides with strengthening of the Central American Monsoon. An abrupt change at 5500 BP involved the development of a sawgrass marsh and onset of peat deposition. The lowest recorded water levels date to 5500–4500 BP. Pollen, isotope, geochemical, and sedimentological data indicate that the coring site was near the edge of the marsh during this period. A rise in the water table after 4500 BP persisted until around 3500 BP. Clay marl deposition from 3500 to 210 BP corresponds to the period of Maya settlement. An increase in δ13C, the presence of Zea pollen, and a reduction in the percentage of forest taxa pollen indicate agricultural activity at this time. In contrast to several nearby paleoenvironmental studies, proxy evidence from Lago Paixban indicates human presence through the Classic/Postclassic period transition (~ 1000 BP) and persisting until the arrival of Europeans. Cessation of human activity around 210 BP resulted in local afforestation and the re-establishment of the current sawgrass marsh at Lago Paixban.

Holocene climate variability and anthropogenic impacts from Lago Paixban, a perennial wetland in Peten, Guatemala

Science.gov (United States)

Wahl, David; Hansen, Richard D.; Byrne, Roger; Anderson, Lysanna; Schreiner, Thomas

2016-03-01

Analyses of an 6 m sediment core from Lago Paixban in Peten, Guatemala, document the complex evolution of a perennial wetland over the last 10,300 years. The basal sediment is comprised of alluvial/colluvial fill deposited in the early Holocene. The absence of pollen and gastropods in the basal sediments suggests intermittently dry conditions until 9000 cal yr. BP (henceforth BP) when the basin began to hold water perennially. Lowland tropical forest taxa dominated the local vegetation at this time. A distinct band of carbonate dating to 8200 BP suggests regionally dry conditions, possibly associated with the 8.2 ka event. Wetter conditions during the Holocene Thermal Maximum are indicated by evidence of a raised water level and an open water lake. The timing of this interval coincides with strengthening of the Central American Monsoon. An abrupt change at 5500 BP involved the development of a sawgrass marsh and onset of peat deposition. The lowest recorded water levels date to 5500-4500 BP. Pollen, isotope, geochemical, and sedimentological data indicate that the coring site was near the edge of the marsh during this period. A rise in the water table after 4500 BP persisted until around 3500 BP. Clay marl deposition from 3500 to 210 BP corresponds to the period of Maya settlement. An increase in δ13C, the presence of Zea pollen, and a reduction in the percentage of forest taxa pollen indicate agricultural activity at this time. In contrast to several nearby paleoenvironmental studies, proxy evidence from Lago Paixban indicates human presence through the Classic/Postclassic period transition ( 1000 BP) and persisting until the arrival of Europeans. Cessation of human activity around 210 BP resulted in local afforestation and the re-establishment of the current sawgrass marsh at Lago Paixban.

Allelic Variation in the Perennial Ryegrass FLOWERING LOCUS T Gene is Associated with Changes in Flowering Time across a Range of Populations

DEFF Research Database (Denmark)

Skøt, Leif; Sanderson, Ruth; Thomas, Ann

2011-01-01

The Arabidopsis (Arabidopsis thaliana) FLOWERING LOCUS T (FT) gene and its orthologs in other plant species (e.g. rice [Oryza sativa] OsFTL2/Hd3a) have an established role in the photoperiodic induction of flowering response. The genomic and phenotypic variations associated with the perennial...

Temperature profile data collected using XBT casts from multiple platforms in a world wide distribution from 01 March 2002 to 26 August 2002 (NODC Accession 0000777)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT casts from MELBOURNE STAR and other platforms in a world wide distribution. Data were collected from 01 March 2002...

Capataz: a framework for distributing algorithms via the World Wide Web

Directory of Open Access Journals (Sweden)

Gonzalo J. Martínez

2015-08-01

Full Text Available In recent years, some scientists have embraced the distributed computing paradigm. As experiments and simulations demand ever more computing power, coordinating the efforts of many different processors is often the only reasonable resort. We developed an open-source distributed computing framework based on web technologies, and named it Capataz. Acting as an HTTP server, web browsers running on many different devices can connect to it to contribute in the execution of distributed algorithms written in Javascript. Capataz takes advantage of architectures with many cores using web workers. This paper presents an improvement in Capataz´ usability and why it was needed. In previous experiments the total time of distributed algorithms proved to be susceptible to changes in the execution time of the jobs. The system now adapts by bundling jobs together if they are too simple. The computational experiment to test the solution is a brute force estimation of pi. The benchmark results show that by bundling jobs, the overall perfomance is greatly increased.

Characterization of gene expression associated with drought avoidance and tolerance traits in a perennial grass species.

Directory of Open Access Journals (Sweden)

Peng Zhou

Full Text Available To understand molecular mechanisms of perennial grass adaptation to drought stress, genes associated with drought avoidance or tolerance traits were identified and their expression patterns were characterized in C4 hybrid bermudagrass [Cynodon dactylon (L. Pers.×C. transvaalensis Burtt Davy, cv. Tifway] and common bermudagrass (C. dactylon, cv. C299. Plants of drought-tolerant 'Tifway' and drought-sensitive 'C299' were exposed to drought for 5 d (mild stress and 10 d (severe stress by withholding irrigation in a growth chamber. 'Tifway' maintained significantly lower electrolyte leakage and higher relative water content than 'C299' at both 5 and 10 d of drought stress. Four cDNA libraries via suppression subtractive hybridization analysis were constructed and identified 277 drought-responsive genes in the two genotypes at 5 and 10 d of drought stress, which were mainly classified into the functional categories of stress defense, metabolism, osmoregulation, membrane system, signal and regulator, structural protein, protein synthesis and degradation, and energy metabolism. Quantitative-PCR analysis confirmed the expression of 36 drought up-regulated genes that were more highly expressed in drought-tolerant 'Tifway' than drought-sensitive 'C299', including those for drought avoidance traits, such as cuticle wax formation (CER1 and sterol desaturase, for drought tolerance traits, such as dehydration-protective proteins (dehydrins, HVA-22-like protein and oxidative stress defense (superoxide dismutase, dehydroascorbate reductase, 2-Cys peroxiredoxins, and for stress signaling (EREBP-4 like protein and WRKY transcription factor. The results suggest that the expression of genes for stress signaling, cuticle wax accumulation, antioxidant defense, and dehydration-protective protein accumulation could be critically important for warm-season perennial grass adaptation to long-term drought stress.

A statistical mixture model for estimating the proportion of unreduced pollen grains in perennial ryegrass (Lolium perenne L.) via the size of pollen grains

NARCIS (Netherlands)

Jansen, R.C.; Nijs, A.P.M. den

1993-01-01

The size of pollen grains is commonly used to indicate the ploidy level of pollen grains. In this paper observations of the diameter of pollen grains are evaluated from one diploid accession of perennial ryegrass (Lolium perenne L.), which was expected to produce diploid (unreduced) pollen grains in

Estimating System-wide Impacts of Smart Grid Demonstrations

Energy Technology Data Exchange (ETDEWEB)

Schneider, Kevin P.; Lightner, Eric M.; Fuller, Jason C.

2015-03-01

Quantifying the impact of a new technology on a single specific distribution feeder is relatively easy, but it does not provide insight into the complexities and variations of a system-wide deployment. It is the inability to extrapolate system-wide impacts that hinders the deployment of many promising new technologies. This paper presents a method of extrapolating technology impacts, either simulated or from a field demonstration, from a limited number of distribution feeders to a system-wide impact. The size of the system can vary from the service territory of a single utility, to a region, or to an entire country. The paper will include an example analysis using the United States Department of Energy (DOE) funded Smart Grid Investment Grant (SGIG) projects, extrapolating their benefits to a national level.

Homeopathy for Perennial Asthma in Adolescents: Pilot Feasibility Study Testing a Randomised Withdrawal Design.

Science.gov (United States)

Mitchiguian Hotta, Livia; Cardinalli Adler, Ubiratan; de Toledo Cesar, Amarilys; Martinez, Edson Zangiacomi; Demarzo, Marcelo Marcos Piva

2018-05-01

 Previous findings from a pragmatic trial suggest that usual care compared with usual care plus individualised homeopathy is not a feasible design to address homeopathic interventions for asthma.  The main purpose of this article was to investigate the feasibility of the randomised withdrawal design as a strategy to assess the effectiveness of a standardised clinical-pharmaceutical homeopathic protocol ( Organon.modus ) on perennial asthma in adolescents.  Randomised withdrawal, double-blind, parallel, placebo-controlled, 12-week study. 12 to 17 years old adolescents, with the diagnosis of perennial asthma, using inhalatory beclomethasone (plus fenoterol for wheezing episodes), who achieved 3 months of well-controlled asthma, after a variable period of individualised homeopathic treatment according to Organon.modus protocol. a secondary care medical specialist centre. continuation with the individualised homeopathic medicine or with indistinguishable placebo during 12 weeks of beclomethasone step-down. number of days of well-controlled asthma. Secondary measures: number of days of fenoterol use, number of visits to an emergency service (without hospitalisation) and percentage of patients excluded due to an exacerbation characterising a partly controlled asthma. Tolerability was assessed by Adverse Events, registered at every visit.  Nineteen patients were randomised to continue treatment with homeopathy and 21 with placebo. Effectiveness measures for the homeopathy and placebo groups respectively were median number of days of good clinical control: 84 versus 30 ( p  = 0.18); median number of days of fenoterol use per patient: 3 versus 5 ( p  = 0.41); visits to an emergency room: 1 versus 6 ( p  = 0.35); percentage of exclusion due to partly controlled asthma: 36.8% versus 71.4% ( p  = 0.05). Few Adverse Events were reported.  This pilot study supports the feasibility of the double-blind randomised withdrawal design in studies investigating

World Wide Web voted most wonderful wonder by web-wide world

CERN Multimedia

2007-01-01

The results are in, and the winner is...the World Wide Web! An online survey conducted by the CNN news group ranks the World Wide Web-invented at CERN--as the most wonderful of the seven modern wonders of the world. (See Bulletin No. 49/2006.) There is currently no speculation about whether they would have had the same results had they distributed the survey by post. The World Wide Web won with a whopping 50 per cent of the votes (3,665 votes). The runner up was CERN again, with 16 per cent of voters (1130 votes) casting the ballot in favour of the CERN particle accelerator. Stepping into place behind CERN and CERN is 'None of the Above' with 8 per cent of the votes (611 votes), followed by the development of Dubai (7%), the bionic arm (7%), China's Three Gorges Damn (5%), The Channel Tunnel (4%), and France's Millau viaduct (3%). Thanks to everyone from CERN who voted. You can view the results on http://edition.cnn.com/SPECIALS/2006/modern.wonders/

Nasal inhalation of budesonide from a spacer in children with perennial rhinitis and asthma

DEFF Research Database (Denmark)

Pedersen, W; Hjuler, Inga Merete; Bisgaard, H

1998-01-01

and asthma inhaled budesonide through the nose from a pressurized aerosol, attached to a spacer device, in a double-blind, placebo-controlled, crossover study. Compared with placebo, budesonide treatment resulted in a significant reduction of nasal symptoms (Pasthma symptoms (P...The standard treatment of allergic rhinitis and asthma consists of topical corticosteroids administered intranasally and inhaled through the mouth. Although this therapy is highly effective, and side-effects are few and mild, it may be possible further to improve the therapeutic index and patient...... compliance with the treatment. In the present study, we evaluated a nasal inhalation system used for the simultaneous treatment of rhinitis and asthma. In principle, it results in an airway deposition of the corticosteroid similar to that of inhaled allergens. Twenty-four children with perennial rhinitis...

Comparative assessment of the phytomeliorative efficiency of perennial grasses on chernozems in the transural part of Bashkortostan

Science.gov (United States)

Khasanova, R. F.; Suyundukov, Ya. T.; Suyundukova, M. B.

2010-01-01

The phytomeliorative efficiency of different groups of perennial herbs was studied. The agrophysical properties of soils under natural grasses (the feather grasses Stipa pennata, S. zalesskii, and S. Lessingiana; the fescue grass Festuca pseudovina; and quack grass), sawn herbs (awnless brome, crested wheat grass, purple alfalfa, the holy clover Onobrychis sibirica, the galega Galega orientalis, and yellow sweet clover), and cereal crops (winter rye and spring wheat) were compared. The formation of the aboveground and underground phytomass and the influence of phytomeliorative herbs on the aggregate state of leached, ordinary, and southern chernozems in the Transural part of Bashkortostan were analyzed.

Temperature profile data from surface seawater intake, bucket, and XBT casts in a world wide distribution from 1995-02-24 to 1996-06-23 (NODC Accession 9700060)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using surface seawater intake, bucket, and XBT casts from several vessels in a world wide distribution from February 24,...

Temperature profile data from MBT casts from AELITA and other platforms in a World wide distribution from 30 January 1970 to 26 July 1990 (NODC Accession 0000227)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using MBT casts in a world wide distribution from AELITA, ESTAFETA OKTYABRYA, MARLIN, ORHEVI, POLYAKOV, and ZVEZDA AZOVA from...

Temperature profile data from surface seawater intake, bucket, and XBT casts in a world wide distribution from 1996-09-30 to 1997-05-27 (NODC Accession 9700161)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using surface seawater intake, bucket, and XBT casts from several vessels in a world wide distribution from September 30,...

Temperature profile data from surface seawater intake, bucket, and XBT casts in a world wide distribution from 1996-09-19 to 1997-03-25 (NODC Accession 9700061)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using surface seawater intake, bucket, and XBT casts from several vessels in a world wide distribution from September 19,...

On the probability distribution of daily streamflow in the United States

Science.gov (United States)

Blum, Annalise G.; Archfield, Stacey A.; Vogel, Richard M.

2017-06-01

Daily streamflows are often represented by flow duration curves (FDCs), which illustrate the frequency with which flows are equaled or exceeded. FDCs have had broad applications across both operational and research hydrology for decades; however, modeling FDCs has proven elusive. Daily streamflow is a complex time series with flow values ranging over many orders of magnitude. The identification of a probability distribution that can approximate daily streamflow would improve understanding of the behavior of daily flows and the ability to estimate FDCs at ungaged river locations. Comparisons of modeled and empirical FDCs at nearly 400 unregulated, perennial streams illustrate that the four-parameter kappa distribution provides a very good representation of daily streamflow across the majority of physiographic regions in the conterminous United States (US). Further, for some regions of the US, the three-parameter generalized Pareto and lognormal distributions also provide a good approximation to FDCs. Similar results are found for the period of record FDCs, representing the long-term hydrologic regime at a site, and median annual FDCs, representing the behavior of flows in a typical year.

Foliar glyphosate treatment alters transcript and hormone profiles in crown buds of leafy spurge and induces dwarfed and bushy phenotypes throughout its perennial life cycle

Science.gov (United States)

Leafy spurge (Euphorbia esula) is an invasive weed of North America and its perennial nature is attributed to underground adventitious buds (UABs) that undergo seasonal cycles of para-, endo- and eco-dormancy. Recommended field rates of glyphosate (~1 kg/ha) destroys above-ground shoots of leafy spu...

Genome-Wide Distribution, Organisation and Functional Characterization of Disease Resistance and Defence Response Genes across Rice Species

Science.gov (United States)

Singh, Sangeeta; Chand, Suresh; Singh, N. K.; Sharma, Tilak Raj

2015-01-01

The resistance (R) genes and defense response (DR) genes have become very important resources for the development of disease resistant cultivars. In the present investigation, genome-wide identification, expression, phylogenetic and synteny analysis was done for R and DR-genes across three species of rice viz: Oryza sativa ssp indica cv 93-11, Oryza sativa ssp japonica and wild rice species, Oryza brachyantha. We used the in silico approach to identify and map 786 R -genes and 167 DR-genes, 672 R-genes and 142 DR-genes, 251 R-genes and 86 DR-genes in the japonica, indica and O. brachyanth a genomes, respectively. Our analysis showed that 60.5% and 55.6% of the R-genes are tandemly repeated within clusters and distributed over all the rice chromosomes in indica and japonica genomes, respectively. The phylogenetic analysis along with motif distribution shows high degree of conservation of R- and DR-genes in clusters. In silico expression analysis of R-genes and DR-genes showed more than 85% were expressed genes showing corresponding EST matches in the databases. This study gave special emphasis on mechanisms of gene evolution and duplication for R and DR genes across species. Analysis of paralogs across rice species indicated 17% and 4.38% R-genes, 29% and 11.63% DR-genes duplication in indica and Oryza brachyantha, as compared to 20% and 26% duplication of R-genes and DR-genes in japonica respectively. We found that during the course of duplication only 9.5% of R- and DR-genes changed their function and rest of the genes have maintained their identity. Syntenic relationship across three genomes inferred that more orthology is shared between indica and japonica genomes as compared to brachyantha genome. Genome wide identification of R-genes and DR-genes in the rice genome will help in allele mining and functional validation of these genes, and to understand molecular mechanism of disease resistance and their evolution in rice and related species. PMID:25902056

Plant community structure in an oligohaline tidal marsh

Science.gov (United States)

Brewer, J.S.; Grace, J.B.

1990-01-01

An oligohaline tidal marsh on the northern shore of Lake Pontchartrain, LA was characterized with respect to the distributions and abundances of plant species over spatial and temporal gradients using Detrended Correspondence Analysis (DCA). In addition, the species distributions were correlated to several physical environmental factors using Detrended Canonical Correspondence Analysis (DCCA). The distributions of species were best correlated with distance from Lake Pontchartrain, and to a lesser extent with elevation and substrate organic matter. They were least correlated with mean soil salinity (referred to here as background salinity). Of the three mid-seasonal dominant species, the perennial grass, Spartina patens, is the most salt tolerant and was found closest to the lake. Further inland the dominant perennial was Sagittaria lancifolia, which has a salt tolerance less than that of Spartina patens. The perennial sedge, Cladium jamaicense, which is the least salt tolerant of the three, was dominant furthest inland. Background salinity levels were generally low (interactions likely also play a role in structuring the plant community. The distributions of several annuals depended on the size and life history of the mid-seasonal dominant perennials. Most of the annuals frequently co-occurred with Sagittaria lancifolia, which was the shortest in stature and had the least persistent canopy of the three mid-seasonal dominant perennials.

Temperature profile data from bucket, surface seawater intake, and XBT casts in a world wide distribution from 07 December 1995 to 18 October 1996 (NODC Accession 9600167)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using bucket, surface seawater intake, and XBT casts from several vessels in a world wide distribution from December 07, 1995...

Dissolved organic carbon and dissolved organic nitrogen data collected using bottle in a world wide distribution from 02 September 1998 to 02 November 2003 (NODC Accession 0002403)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Dissolved organic carbon (DOC) and dissolved organic nitrogen (DON) data were collected using bottle casts in a world wide distribution. Data were collected from 02...

Genome wide selection in Citrus breeding.

Science.gov (United States)

Gois, I B; Borém, A; Cristofani-Yaly, M; de Resende, M D V; Azevedo, C F; Bastianel, M; Novelli, V M; Machado, M A

2016-10-17

Genome wide selection (GWS) is essential for the genetic improvement of perennial species such as Citrus because of its ability to increase gain per unit time and to enable the efficient selection of characteristics with low heritability. This study assessed GWS efficiency in a population of Citrus and compared it with selection based on phenotypic data. A total of 180 individual trees from a cross between Pera sweet orange (Citrus sinensis Osbeck) and Murcott tangor (Citrus sinensis Osbeck x Citrus reticulata Blanco) were evaluated for 10 characteristics related to fruit quality. The hybrids were genotyped using 5287 DArT_seq TM (diversity arrays technology) molecular markers and their effects on phenotypes were predicted using the random regression - best linear unbiased predictor (rr-BLUP) method. The predictive ability, prediction bias, and accuracy of GWS were estimated to verify its effectiveness for phenotype prediction. The proportion of genetic variance explained by the markers was also computed. The heritability of the traits, as determined by markers, was 16-28%. The predictive ability of these markers ranged from 0.53 to 0.64, and the regression coefficients between predicted and observed phenotypes were close to unity. Over 35% of the genetic variance was accounted for by the markers. Accuracy estimates with GWS were lower than those obtained by phenotypic analysis; however, GWS was superior in terms of genetic gain per unit time. Thus, GWS may be useful for Citrus breeding as it can predict phenotypes early and accurately, and reduce the length of the selection cycle. This study demonstrates the feasibility of genomic selection in Citrus.

Modelling farmer uptake of perennial energy crops in the UK

International Nuclear Information System (INIS)

Sherrington, Chris; Moran, Dominic

2010-01-01

The UK Biomass Strategy suggests that to reach the technical potential of perennial energy crops such as short rotation coppice (SRC) willow and miscanthus by 2020 requires 350,000 hectares of land. This represents a more than 20-fold increase on the current 15,546 hectares. Previous research has identified several barriers to adoption, including concerns over security of income from contracts. In addition, farmers perceive returns from these crops to be lower than for conventional crops. This paper uses a farm-level linear programming model to investigate theoretical uptake of energy crops at different gross margins under the assumption of a profit-maximising decision maker, and in the absence of known barriers to adoption. The findings suggest that while SRC willow, at current prices, remains less competitive, returns to miscanthus should have encouraged adoption on a wider scale than at present. This highlights the importance of the barriers to adoption. Recently announced contracts for miscanthus appear to offer a significant premium to farmers in order to encourage them to grow the crops. This raises the question of whether a more cost-effective approach would be for government to provide guarantees addressing farmers concerns including security of income from the contracts. Such an approach should encourage adoption at lower gross margins. (author)

Temperature profile data from surface seawater intake, bucket, and XBT casts in a world wide distribution from 1994-06-29 to 1996-06-08 (NODC Accession 9600120)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using surface seawater intake, bucket, and XBT casts from multiple vessels in a world wide distribution from June 29, 1994 to...

Temperature profile data from surface seawater intake, bucket, and XBT casts in a world wide distribution from 1996-03-01 to 1997-01-03 (NODC Accession 9700036)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using surface seawater intake, bucket, and XBT casts from several vessels in a world wide distribution from March 1, 1996 to...

Temperature profile data from surface seawater intake, bucket, and XBT casts in a world wide distribution from 1996-08-11 to 1997-07-16 (NODC Accession 9700213)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using surface seawater intake, bucket, and XBT casts in a world wide distribution by several vessels from August 11, 1996 to...

Temperature profiles from MBT casts from a World-Wide distribution from the ALASKA and other platforms from 1943-02-02 to 1964-10-10 (NODC Accession 9200027)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected from MBT casts from a a World-Wide distribution. Data were collected from the ALASKA and other platforms from 02 February...

Depth, chlorophyll, and total pigment data were collected using bottle casts in a world-wide distribution from 16 March 1997 to 30 January 1998 (NODC Accession 0000292)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Depth, chlorophyll, and total pigment data were collected using bottle casts from TIOGA and other platforms in a world-wide distribution from March 16, 1997 to...

Distributing flight dynamics products via the World Wide Web

Science.gov (United States)

Woodard, Mark; Matusow, David

1996-01-01

The NASA Flight Dynamics Products Center (FDPC), which make available selected operations products via the World Wide Web, is reported on. The FDPC can be accessed from any host machine connected to the Internet. It is a multi-mission service which provides Internet users with unrestricted access to the following standard products: antenna contact predictions; ground tracks; orbit ephemerides; mean and osculating orbital elements; earth sensor sun and moon interference predictions; space flight tracking data network summaries; and Shuttle transport system predictions. Several scientific data bases are available through the service.

Temperature profile data from MBT casts from NAUKA and other platforms in a World-wide distribution from 26 July 1966 to 09 September 1990 (NODC Accession 0000228)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using MBT casts in a World-wide distribution from the NAUKA, FIOLENT, LESNOYE, and other platforms from 26 July 1966 to 09...

The wide religiosity of the Romanian students

Directory of Open Access Journals (Sweden)

D. SOREA

2016-11-01

Full Text Available The contemporary Western religiosity is marked by the effects of secularization. The results of a qualitative research having as subjects sociology students from Brasov indicate their explicit statements of belonging to Christianity and their acceptance of the effectiveness of pagan practices in evil eye treatment. Conjugation of these positionings requires a broader understanding of religiosity than in the case of dogmatic Christianity. The faith options for the students are tributary to the pre-Christian representation of the world, perennial in the Romanian cultural space.

Temperature profile data from MBT casts from NAUKA and other platforms in a World-wide distribution from 18 June 1970 to 05 May 1989 (NODC Accession 0000229)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using MBT casts in a World-wide distribution from the NAUKA, AELITA, LESNOYE, and other platforms from 18 June 1970 to 05 May...

Short-term effects of a dung pat on N₂ fixation and total N uptake in a perennial ryegrass/white clover mixture

DEFF Research Database (Denmark)

Jørgensen, F.V.; Jensen, E.S.

1997-01-01

The short-term effects of a simulated cattle dung pat on N-2 fixation and total uptake of N in a perennial ryegrass/white clover mixture was studied in a container experiment using sheep faeces mixed with water to a DM content of 13%. We used a new N-15 cross-labelling technique to determine...

Efficacy of permethrin-treated bed nets in the prevention of mortality in young children in an area of high perennial malaria transmission in western Kenya

NARCIS (Netherlands)

Phillips-Howard, Penelope A.; Nahlen, Bernard L.; Kolczak, Margarette S.; Hightower, Allen W.; ter Kuile, Feiko O.; Alaii, Jane A.; Gimnig, John E.; Arudo, John; Vulule, John M.; Odhacha, Amos; Kachur, S. Patrick; Schoute, Erik; Rosen, Daniel H.; Sexton, John D.; Oloo, Aggrey J.; Hawley, William A.

2003-01-01

A group-randomized controlled trial of insecticide (permethrin)-treated bed nets (ITNs) was conducted in an area of high perennial malaria transmission in western Kenya to test the effect of ITNs on all-cause mortality in children 1-59 months of age. Child deaths were monitored over a two-year

High quality reference genome of drumstick tree (Moringa oleifera Lam.), a potential perennial crop.

Science.gov (United States)

Tian, Yang; Zeng, Yan; Zhang, Jing; Yang, ChengGuang; Yan, Liang; Wang, XuanJun; Shi, ChongYing; Xie, Jing; Dai, TianYi; Peng, Lei; Zeng Huan, Yu; Xu, AnNi; Huang, YeWei; Zhang, JiaJin; Ma, Xiao; Dong, Yang; Hao, ShuMei; Sheng, Jun

2015-07-01

The drumstick tree (Moringa oleifera Lam.) is a perennial crop that has gained popularity in certain developing countries for its high-nutrition content and adaptability to arid and semi-arid environments. Here we report a high-quality draft genome sequence of M. oleifera. This assembly represents 91.78% of the estimated genome size and contains 19,465 protein-coding genes. Comparative genomic analysis between M. oleifera and related woody plant genomes helps clarify the general evolution of this species, while the identification of several species-specific gene families and positively selected genes in M. oleifera may help identify genes related to M. oleifera's high protein content, fast-growth, heat and stress tolerance. This reference genome greatly extends the basic research on M. oleifera, and may further promote applying genomics to enhanced breeding and improvement of M. oleifera.

Two Paralogous Families of a Two-Gene Subtilisin Operon Are Widely Distributed in Oral Treponemes

Science.gov (United States)

Correia, Frederick F.; Plummer, Alvin R.; Ellen, Richard P.; Wyss, Chris; Boches, Susan K.; Galvin, Jamie L.; Paster, Bruce J.; Dewhirst, Floyd E.

2003-01-01

Certain oral treponemes express a highly proteolytic phenotype and have been associated with periodontal diseases. The periodontal pathogen Treponema denticola produces dentilisin, a serine protease of the subtilisin family. The two-gene operon prcA-prtP is required for expression of active dentilisin (PrtP), a putative lipoprotein attached to the treponeme's outer membrane or sheath. The purpose of this study was to examine the diversity and structure of treponemal subtilisin-like proteases in order to better understand their distribution and function. The complete sequences of five prcA-prtP operons were determined for Treponema lecithinolyticum, “Treponema vincentii,” and two canine species. Partial operon sequences were obtained for T. socranskii subsp. 04 as well as 450- to 1,000-base fragments of prtP genes from four additional treponeme strains. Phylogenetic analysis demonstrated that the sequences fall into two paralogous families. The first family includes the sequence from T. denticola. Treponemes possessing this operon family express chymotrypsin-like protease activity and can cleave the substrate N-succinyl-alanyl-alanyl-prolyl-phenylalanine-p-nitroanilide (SAAPFNA). Treponemes possessing the second paralog family do not possess chymotrypsin-like activity or cleave SAAPFNA. Despite examination of a range of protein and peptide substrates, the specificity of the second protease family remains unknown. Each of the fully sequenced prcA and prtP genes contains a 5′ hydrophobic leader sequence with a treponeme lipobox. The two paralogous families of treponeme subtilisins represent a new subgroup within the subtilisin family of proteases and are the only subtilisin lipoprotein family. The present study demonstrated that the subtilisin paralogs comprising a two-gene operon are widely distributed among treponemes. PMID:14617650

Wide-Scale Adoption of Photovoltaic Energy

DEFF Research Database (Denmark)

Yang, Yongheng; Enjeti, Prasad; Blaabjerg, Frede

2015-01-01

Current grid standards largely require that low-power (e.g., several kilowatts) single-phase photovoltaic (PV) systems operate at unity power factor (PF) with maximum power point tracking (MPPT), and disconnect from the grid under grid faults by means of islanding detection. However, in the case...... of wide-scale penetration of single-phase PV systems in the distributed grid, disconnection under grid faults can contribute to 1) voltage flickers, 2) power outages, and 3) system instability. This article explores grid code modifications for a wide-scale adoption of PV systems in the distribution grid....... In addition, based on the fact that Italy and Japan have recently undertaken a major review of standards for PV power conversion systems connected to low-voltage networks, the importance of low voltage ride-through (LVRT) for single-phase PV power systems under grid faults is considered, along with three...

Reproductive effort of some annual and perennial plant species: impact of successional sequence, habitat conditions and plant size

International Nuclear Information System (INIS)

Shaukat, S.; Khan, M.A.; Zaidi, S.; Siddiqui, M.F.; Khan, N.; Zafar, H.

2013-01-01

The reproductive effort of some annual and perennial plant species was investigated with respect to successional sequence, habitat conditions and plant size. in the psammosere succession (dune succession), the reproductive effort (RE) of Cressa cretica and A triplex griffithii was significantly greater in the early stage compared to that in late succession. Likewise, in relation to lithosere succession, Sporobolus arabicus. Pluchea lanceolata and Vernonia cenerescens all showed high reproductive effort in early part of succession compared to that of late succession. The annuals (S. arabicus and P lance/ala) exhibited greater reproductive effort compared to the perennial species Vernonia cinerescens. Examination of the Impact of site differences on reproductive effort showed that four grasses including Selaria intermedia, Chioris harbata, Cenchrus hiflorus, and Eragroslis pilosa were found to have significantly (P<0.05) greater reproductive effort in site 1 (near cultivated field), compared to site 2 (a vacant lot), which had low nutrient level compared to site 1. The reproductive effort of Sonclius asper (a composite) did not exhibit significant difference between sites. The investigation of relationships between plant size (volume) and reproductive effort of Solanuin forskalii, Senna holosericea and Heliolropium ophioglossum showed positive correlations between plant size and reproductive effort. Solanum forskalii and Senna holosericca, in particular, exhibited a close association in this respect. It is concluded that: 1) RE is greater in early compared to late succession, 2) RE changes with the habitat and 3) there seems to be a direct relationship between RE and plant size. (author)

Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs

DEFF Research Database (Denmark)

Islin, Sóley Ruth; Menzel, Peter; Krogh, Anders

2016-01-01

Limited by culture-dependent methods the number of viruses identified from thermophilic Archaea and Bacteria is still very small. In this study we retrieved viral sequences from six hot spring metagenomes isolated worldwide, revealing a wide distribution of four archaeal viral families....... Among the novel genomes, one belongs to a putative thermophilic virus infecting the bacterium Hydrogenobaculum, for which no virus has been reported in the literature. Moreover, a high viral diversity was observed in the metagenomes, especially among the Lipothrixviridae, as indicated by the large...

Wind direction/velocity and current direction/velocity data from current meter casts in a world wide distribution from 1970-12-06 to 1991-10-01 (NODC Accession 9700218)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Wind direction/velocity and current direction/velocity data were collected using current meter casts in a world wide distribution from December 6, 1970 to October 1,...

Genome-wide distribution comparative and composition analysis of the SSRs in Poaceae.

Science.gov (United States)

Wang, Yi; Yang, Chao; Jin, Qiaojun; Zhou, Dongjie; Wang, Shuangshuang; Yu, Yuanjie; Yang, Long

2015-02-15

The Poaceae family is of great importance to human beings since it comprises the cereal grasses which are the main sources for human food and animal feed. With the rapid growth of genomic data from Poaceae members, comparative genomics becomes a convinent method to study genetics of diffierent species. The SSRs (Simple Sequence Repeats) are widely used markers in the studies of Poaceae for their high abundance and stability. In this study, using the genomic sequences of 9 Poaceae species, we detected 11,993,943 SSR loci and developed 6,799,910 SSR primer pairs. The results show that SSRs are distributed on all the genomic elements in grass. Hexamer is the most frequent motif and AT/TA is the most frequent motif in dimer. The abundance of the SSRs has a positive linear relationship with the recombination rate. SSR sequences in the coding regions involve a higher GC content in the Poaceae than that in the other species. SSRs of 70-80 bp in length showed the highest AT/GC base ratio among all of these loci. The result shows the highest polymorphism rate belongs to the SSRs ranged from 30 bp to 40 bp. Using all the SSR primers of Japonica, nineteen universal primers were selected and located on the genome of the grass family. The information of SSR loci, the SSR primers and the tools of mining and analyzing SSR are provided in the PSSRD (Poaceae SSR Database, http://biodb.sdau.edu.cn/pssrd/). Our study and the PSSRD database provide a foundation for the comparative study in the Poaceae and it will accelerate the study on markers application, gene mapping and molecular breeding.

Improvement of quality of life by treatment with cetirizine in patients with perennial allergic rhinitis as determined by a French version of the SF-36 questionnaire.

Science.gov (United States)

Bousquet, J; Duchateau, J; Pignat, J C; Fayol, C; Marquis, P; Mariz, S; Ware, J E; Valentin, B; Burtin, B

1996-08-01

Perennial allergic rhinitis impairs social life, but it is not known whether quality of life may be improved when patients are treated with an H1-blocker. A randomized, double-blind, placebo-controlled study was carried out with cetirizine to assess the effect of this drug on quality of life. Two hundred seventy-four patients with perennial allergic rhinitis were tested. Quality of life was measured by using the Medical Outcome Study Short-Form Health Survey (SF-36) questionnaire. After a 2-week run-in period, cetirizine, 10 mg once daily, (136 patients) or placebo (138 patients) was given for the next 6 weeks. The SF-36 questionnaire was administered after the run-in period (at the start of treatment) and after 1 and 6 weeks of treatment. Symptom-medication scores were measured daily during the study. After the run-in period (baseline), there were no significant differences between the cetirizine and placebo groups in terms of symptoms or quality-of-life scores. After 6 weeks of treatment, percentage of days without rhinitis or with only mild rhinitis symptoms was significantly greater in the cetirizine group in comparison with the placebo group (p < 0.0001, Mann-Whitney U test). All of the nine quality-of-life dimensions were significantly improved (from p = 0.01 to p < 0.0001, Mann-Whitney U test) after 1 and 6 weeks of cetirizine treatment compared with placebo. There was no improvement in the placebo group. This study is the first to demonstrate that an H1-blocker, cetirizine, can improve quality of life for patients with perennial allergic rhinitis.

The effects of global change on the distribution, species richness and life history of European dragonflies

DEFF Research Database (Denmark)

Olsen, Kent

2016-01-01

traits such as taxonomy, habitat specificity, metabolic plasticity, and biogeographic traits such zoogeographical origin. In Paper I we describe how changes in species richness pattern across Europe correlate with range changes in different taxonomic and biogeographic groups of dragonflies. We found...... specialized species adapted to permanent running (perennial lotic) water habitats. We found that species reproducing in temporary water track climate changes better than species adapted to permanent water. In Paper III we explore the relationship between metabolic plasticity (expressed as the ability to shift...... with less metabolic plasticity. We conducted experimental ex-situ measurements of metabolic rates measured as respiration rates at 10°C and 20°C, respectively, of four Scandinavian dragonfly species. We used two species with a northern distribution, one with a southern distribution and one ubiquitous...

Temperature profile and oxygen data collected from multiple ships using CTD casts in a world wide distribution from 04 September 1979 to 15 April 1998 (NODC Accession 0002716)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile and oxygen data were collected using CTD casts in a world wide distribution from multiple platforms from 04 September 1979 to 15 April 1998. Data...

Details of 1π sr wide acceptance angle electrostatic lens for electron energy and two-dimensional angular distribution analysis combined with real space imaging

International Nuclear Information System (INIS)

Tóth, László; Matsuda, Hiroyuki; Matsui, Fumihiko; Goto, Kentaro; Daimon, Hiroshi

2012-01-01

We propose a new 1π sr Wide Acceptance Angle Electrostatic Lens (WAAEL), which works as a photoemission electron microscope (PEEM), a highly sensitive display-type electron energy and two-dimensional angular distribution analyzer. It can display two-dimensional angular distributions of charged particles within the acceptance angle of ±60° that is much larger than the largest acceptance angle range so far and comparable to the display-type spherical mirror analyzer developed by Daimon et al. . It has good focusing capabilities with 5-times magnification and 27(4) μm lateral-resolution. The relative energy resolution is typically from 2 to 5×10 -3 depending on the diameter of energy aperture and the emission area on the sample. Although, the lateral resolution of the presented lens is far from those are available nowadays, but this is the first working model that can form images using charged particles collected from 1π sr wide acceptance angle. The realization of such lens system is one of the first possible steps towards reaching the field of imaging type atomic resolution electron microscopy Feynman et al. Here some preliminary results are shown.

Air/delta/sea surface temperature, pressure, and other data from MISS GAIL in a world-wide distribution from 21 October 1957 to 18 April 1961 (NODC Accession 0000366)

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National Oceanic and Atmospheric Administration, Department of Commerce — Air/delta/sea surface temperature, pressure, and other data were collected from the MISS GAIL in a world-wide distribution from October 21, 1957 to April 18, 1961....

Wide Distribution and Genetic Diversity of Babesia microti in Small Mammals from Yunnan Province, Southwestern China.

Science.gov (United States)

Gao, Zi-Hou; Huang, Tao-Hua; Jiang, Bao-Gui; Jia, Na; Liu, Zheng-Xiang; Shao, Zong-Ti; Jiang, Rui-Ruo; Liu, Hong-Bo; Wei, Ran; Li, Yu-Qiong; Yao, Hong-Wu; von Fricken, Michael E; Jiang, Jia-Fu; Du, Chun-Hong; Cao, Wu-Chun

2017-10-01

Babesia, usually found in wild and domestic mammals worldwide, have recently been responsible for emerging malaria-like zoonosis in infected patients. Human B. microti infection has been identified in China, primarily in the Southwest along the Myanmar border but little direct surveillance of B. microti infection in rodents has been carried out here (Yunnan province). In this region, a diverse topographic range combined with tropical moisture sustains a high biodiversity of small mammals, which might play important role on Babesia transmission. Small mammals were captured in 141 sample locations from 18 counties located Yunnan Province, and screened for B. microti-like parasites infection by a nested PCR to target 18S rRNA gene of Babesia, plus directly sequencing for positive samples. Univariate and multivariate forward stepwise logistic regression analysis was used to access the association between infections and some related risk factors. Infection with Babesia microti was confirmed in 2.4% (53/ 2204) of small mammals. Significant differences in prevalence rates of B. microti were observed based on variations in forest, agricultural, and residential landscapes. Furthermore, adult small mammals had higher prevalence rates than younger, pubertal mammals. The near full-length 18S rRNA gene revealed that there were two types of B. microti, Kobe and Otsu, which demonstrate the genetic diversity and regional distribution. There exists a wide distribution and genetic diversity of endemic B. microti in Southwestern China, warranting further investigations and monitoring of clinical disease in individuals presenting with Babesia like symptoms in these areas.

Comparison of Mometasone Furoate Monohydrate (Nasonex and Fluticasone Propionate (Flixonase Nasal Sprays in the Treatment of Dust Mite-sensitive Children with Perennial Allergic Rhinitis

Directory of Open Access Journals (Sweden)

Ka-Kit Mak

2013-08-01

Conclusion: Following the 4-week therapy, MFM provided greater improvement compared to FP for symptoms of childhood perennial-allergic rhinitis. Based on their TSSs, the MFM group experienced more effective relief of nasal symptoms, whereas the FP group experienced more effective relief of non-nasal symptoms.

Genomic Selection Using Genotyping-By-Sequencing Data with Different Coverage Depth in Perennial Ryegrass

DEFF Research Database (Denmark)

Cericola, Fabio; Fé, Dario; Janss, Luc

2015-01-01

the diagonal elements by estimating the amount of genetic variance caused by the reduction of the coverage depth. Secondly we developed a method to scale the relationship matrix by taking into account the overall amount of pairwise non-missing loci between all families. Rust resistance and heading date were......Genotyping by sequencing (GBS) allows generating up to millions of molecular markers with a cost per sample which is proportional to the level of multiplexing. Increasing the sample multiplexing decreases the genotyping price but also reduces the numbers of reads per marker. In this work we...... investigated how this reduction of the coverage depth affects the genomic relationship matrices used to estimated breeding value of F2 family pools in perennial ryegrass. A total of 995 families were genotyped via GBS providing more than 1.8M allele frequency estimates for each family with an average coverage...

Genetic characterisation of seed yield and fertility traits in perennial ryegrass (Lolium perenne L.)

DEFF Research Database (Denmark)

Studer, Bruno; Jensen, Louise Bach; Hentrup, Stephan

2008-01-01

A population. Path analysis partitioned the direct and indirect effects of seed yield components on seed yield per plant. Seed yield per panicle showed the highest effect on total seed yield. The adjusted mean values of each trait and a genetic linkage map consisting of 97 anonymous and 85 gene associated DNA......Seed yield is a trait of major interest for the key grassland species Lolium perenne L. An F2 mapping population of perennial ryegrass (VrnA), recently characterised for vernalisation response, was assessed in a glasshouse for traits related to seed yield based on a lattice design with four...... replications over 2 years. The traits heading date, plant height, length of panicles, number of panicles per plant, seed yield per panicle, flag leaf length, flag leaf width and seed yield per plant revealed repeatabilities ranging from 41 to 76% and a considerable amount of genetic variation in the Vrn...

Temperature profiles from XBT casts from a world-wide distribution from the EMERALD INDAH and other platforms from 28 November 2000 to 29 May 2001 (NODC Accession 0000465)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT and other data were collected from a world-wide distribution from the EMERALD INDAH and other platforms from 28 November 2000 to 29 May 2001. Data were submitted...

Conservation, Divergence, and Genome-Wide Distribution of PAL and POX A Gene Families in Plants.

Science.gov (United States)

Rawal, H C; Singh, N K; Sharma, T R

2013-01-01

Genome-wide identification and phylogenetic and syntenic comparison were performed for the genes responsible for phenylalanine ammonia lyase (PAL) and peroxidase A (POX A) enzymes in nine plant species representing very diverse groups like legumes (Glycine max and Medicago truncatula), fruits (Vitis vinifera), cereals (Sorghum bicolor, Zea mays, and Oryza sativa), trees (Populus trichocarpa), and model dicot (Arabidopsis thaliana) and monocot (Brachypodium distachyon) species. A total of 87 and 1045 genes in PAL and POX A gene families, respectively, have been identified in these species. The phylogenetic and syntenic comparison along with motif distributions shows a high degree of conservation of PAL genes, suggesting that these genes may predate monocot/eudicot divergence. The POX A family genes, present in clusters at the subtelomeric regions of chromosomes, might be evolving and expanding with higher rate than the PAL gene family. Our analysis showed that during the expansion of POX A gene family, many groups and subgroups have evolved, resulting in a high level of functional divergence among monocots and dicots. These results will act as a first step toward the understanding of monocot/eudicot evolution and functional characterization of these gene families in the future.

Conservation, Divergence, and Genome-Wide Distribution of PAL and POX A Gene Families in Plants

Directory of Open Access Journals (Sweden)

H. C. Rawal

2013-01-01

Full Text Available Genome-wide identification and phylogenetic and syntenic comparison were performed for the genes responsible for phenylalanine ammonia lyase (PAL and peroxidase A (POX A enzymes in nine plant species representing very diverse groups like legumes (Glycine max and Medicago truncatula, fruits (Vitis vinifera, cereals (Sorghum bicolor, Zea mays, and Oryza sativa, trees (Populus trichocarpa, and model dicot (Arabidopsis thaliana and monocot (Brachypodium distachyon species. A total of 87 and 1045 genes in PAL and POX A gene families, respectively, have been identified in these species. The phylogenetic and syntenic comparison along with motif distributions shows a high degree of conservation of PAL genes, suggesting that these genes may predate monocot/eudicot divergence. The POX A family genes, present in clusters at the subtelomeric regions of chromosomes, might be evolving and expanding with higher rate than the PAL gene family. Our analysis showed that during the expansion of POX A gene family, many groups and subgroups have evolved, resulting in a high level of functional divergence among monocots and dicots. These results will act as a first step toward the understanding of monocot/eudicot evolution and functional characterization of these gene families in the future.

System-wide power management control via clock distribution network

Science.gov (United States)

Coteus, Paul W.; Gara, Alan; Gooding, Thomas M.; Haring, Rudolf A.; Kopcsay, Gerard V.; Liebsch, Thomas A.; Reed, Don D.

2015-05-19

An apparatus, method and computer program product for automatically controlling power dissipation of a parallel computing system that includes a plurality of processors. A computing device issues a command to the parallel computing system. A clock pulse-width modulator encodes the command in a system clock signal to be distributed to the plurality of processors. The plurality of processors in the parallel computing system receive the system clock signal including the encoded command, and adjusts power dissipation according to the encoded command.

Distribution and biophysical processes of beaded streams in Arctic permafrost landscapes

Science.gov (United States)

Arp, Christopher D.; Whitman, Matthew S.; Jones, Benjamin M.; Grosse, Guido; Gaglioti, Benjamin V.; Heim, Kurt C.

2015-01-01

Beaded streams are widespread in permafrost regions and are considered a common thermokarst landform. However, little is known about their distribution, how and under what conditions they form, and how their intriguing morphology translates to ecosystem functions and habitat. Here we report on a Circum-Arctic survey of beaded streams and a watershed-scale analysis in northern Alaska using remote sensing and field studies. We mapped over 400 channel networks with beaded morphology throughout the continuous permafrost zone of northern Alaska, Canada, and Russia and found the highest abundance associated with medium- to high- ground ice content permafrost in moderately sloping terrain. In the Fish Creek watershed, beaded streams accounted for half of the drainage density, occurring primarily as low-order channels initiating from lakes and drained lake basins. Beaded streams predictably transition to alluvial channels with increasing drainage area and decreasing channel slope, although this transition is modified by local controls on water and sediment delivery. Comparison of one beaded channel using repeat photography between 1948 and 2013 indicate a relatively stable landform and 14C dating of basal sediments suggest channel formation may be as early as the Pleistocene-Holocene transition. Contemporary processes, such as deep snow accumulation in riparian zones effectively insulates channel ice and allows for perennial liquid water below most beaded stream pools. Because of this, mean annual temperatures in pool beds are greater than 2°C, leading to the development of perennial thaw bulbs or taliks underlying these thermokarst features. In the summer, some pools thermally stratify, which reduces permafrost thaw and maintains coldwater habitats. Snowmelt generated peak-flows decrease rapidly by two or more orders of magnitude to summer low flows with slow reach-scale velocity distributions ranging from 0.1 to 0.01 m/s, yet channel runs still move water rapidly

Accessing NASA Technology with the World Wide Web

Science.gov (United States)

Nelson, Michael L.; Bianco, David J.

1995-01-01

NASA Langley Research Center (LaRC) began using the World Wide Web (WWW) in the summer of 1993, becoming the first NASA installation to provide a Center-wide home page. This coincided with a reorganization of LaRC to provide a more concentrated focus on technology transfer to both aerospace and non-aerospace industry. Use of WWW and NCSA Mosaic not only provides automated information dissemination, but also allows for the implementation, evolution and integration of many technology transfer and technology awareness applications. This paper describes several of these innovative applications, including the on-line presentation of the entire Technology OPportunities Showcase (TOPS), an industrial partnering showcase that exists on the Web long after the actual 3-day event ended. The NASA Technical Report Server (NTRS) provides uniform access to many logically similar, yet physically distributed NASA report servers. WWW is also the foundation of the Langley Software Server (LSS), an experimental software distribution system which will distribute LaRC-developed software. In addition to the more formal technology distribution projects, WWW has been successful in connecting people with technologies and people with other people.

Field and Satellite Observations of the Formation and Distribution of Arctic Atmospheric Bromine Above a Rejuvenated Sea Ice Cover

Science.gov (United States)

Nghiem, Son V.; Rigor, Ignatius G.; Richter, Andreas; Burrows, John P.; Shepson, Paul B.; Bottenheim, Jan; Barber, David G.; Steffen, Alexandra; Latonas, Jeff; Wang, Feiyue;

Continental-wide distribution of crayfish species in Europe: update and maps

Directory of Open Access Journals (Sweden)

Kouba A.

2014-01-01

Full Text Available Recently published astacological studies substantially improved available data on distribution of crayfish in various European regions. At the same time, spread of invasive species has been recorded, additional non-indigenous species became established in various countries, and losses of populations of native species due to crayfish plague and other negative factors were observed. We overview recent advances in this knowledge, and provide updated colour maps of the distribution of all crayfish species present in Europe. These maps are originally based on the data from the Atlas of Crayfish in Europe published in 2006 as a result of the CRAYNET project, and were further updated from more recently published reports, grey literature, and especially thanks to contributions and feedback of over 70 specialists from 32 countries. Separate maps are available for all indigenous crayfish species in Europe as well as for three most widespread non-indigenous crayfish species. Additionally, two maps give locations of known findings of crayfish species introduced to Europe after 1980. These newly established alien species have so far restricted distributions; however, the frequency of recent reports suggests that findings of such species resulting from releases of aquarium pets will further increase.

A DArT marker genetic map of perennial ryegrass (Lolium perenne L.) integrated with detailed comparative mapping information; comparison with existing DArT marker genetic maps of Lolium perenne, L. multiflorum and Festuca pratensis.

Science.gov (United States)

King, Julie; Thomas, Ann; James, Caron; King, Ian; Armstead, Ian

2013-07-03

Ryegrasses and fescues (genera, Lolium and Festuca) are species of forage and turf grasses which are used widely in agricultural and amenity situations. They are classified within the sub-family Pooideae and so are closely related to Brachypodium distachyon, wheat, barley, rye and oats. Recently, a DArT array has been developed which can be used in generating marker and mapping information for ryegrasses and fescues. This represents a potential common marker set for ryegrass and fescue researchers which can be linked through to comparative genomic information for the grasses. A F2 perennial ryegrass genetic map was developed consisting of 7 linkage groups defined by 1316 markers and deriving a total map length of 683 cM. The marker set included 866 DArT and 315 gene sequence-based markers. Comparison with previous DArT mapping studies in perennial and Italian ryegrass (L. multiflorum) identified 87 and 105 DArT markers in common, respectively, of which 94% and 87% mapped to homoeologous linkage groups. A similar comparison with meadow fescue (F. pratensis) identified only 28 DArT markers in common, of which c. 50% mapped to non-homoelogous linkage groups. In L. perenne, the genetic distance spanned by the DArT markers encompassed the majority of the regions that could be described in terms of comparative genomic relationships with rice, Brachypodium distachyon, and Sorghum bicolor. DArT markers are likely to be a useful common marker resource for ryegrasses and fescues, though the success in aligning different populations through the mapping of common markers will be influenced by degrees of population interrelatedness. The detailed mapping of DArT and gene-based markers in this study potentially allows comparative relationships to be derived in future mapping populations characterised using solely DArT markers.

Temperature profile and water depth data collected from SAXON STAR and other platforms in a World wide distribution from 09 March 1983 to 12 November 1986 (NODC Accession 8700035)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile and water depth data were collected using BT and XBT from the SAXON STAR and other platforms in a World wide distribution. Data were collected...

Temperature profile data from XBT casts in a World-wide distribution from NOAA Ship RESEARCHER and other platforms from 1982-05-24 to 1996-03-21 (NODC Accession 9600116)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT casts in a World-wide distribution from NOAA Ship RESEARCHER and other platforms from 24 May 1982 to 21 March 1996....

Identifying obstacles and ranking common biological control research priorities for Europe to manage most economically important pests in arable, vegetable and perennial crops.

Science.gov (United States)

Lamichhane, Jay Ram; Bischoff-Schaefer, Monika; Bluemel, Sylvia; Dachbrodt-Saaydeh, Silke; Dreux, Laure; Jansen, Jean-Pierre; Kiss, Jozsef; Köhl, Jürgen; Kudsk, Per; Malausa, Thibaut; Messéan, Antoine; Nicot, Philippe C; Ricci, Pierre; Thibierge, Jérôme; Villeneuve, François

2017-01-01

EU agriculture is currently in transition from conventional crop protection to integrated pest management (IPM). Because biocontrol is a key component of IPM, many European countries recently have intensified their national efforts on biocontrol research and innovation (R&I), although such initiatives are often fragmented. The operational outputs of national efforts would benefit from closer collaboration among stakeholders via transnationally coordinated approaches, as most economically important pests are similar across Europe. This paper proposes a common European framework on biocontrol R&I. It identifies generic R&I bottlenecks and needs as well as priorities for three crop types (arable, vegetable and perennial crops). The existing gap between the market offers of biocontrol solutions and the demand of growers, the lengthy and expensive registration process for biocontrol solutions and their varying effectiveness due to variable climatic conditions and site-specific factors across Europe are key obstacles hindering the development and adoption of biocontrol solutions in Europe. Considering arable, vegetable and perennial crops, a dozen common target pests are identified for each type of crop and ranked by order of importance at European level. Such a ranked list indicates numerous topics on which future joint transnational efforts would be justified. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

Anticholinesterase activity and chemical profile of an active chromatographic fraction of ethanolic extract from Bellis perennis L. (Asteraceae) flowers; Atividade anticolinesterasica e perfil quimico de uma fracao cromatografica ativa do extrato etanolico das flores Bellis perennis L. (Asteraceae)

Energy Technology Data Exchange (ETDEWEB)

Marques, Thiago Henrique Costa; Santos, Pauline Sousa dos; Freitas, Rivelilson Mendes de, E-mail: rivelilson@pq.cnpq.br [Universidade Federal do Piaui (UFPI), Teresina, PI (Brazil). Centro de Ciencias da Saude. Departamento de Bioquimica e Farmacologia; Carvalho, Rusbene Bruno Fonseca de; Melo, Cassio Herbert Santos de [Universidade Federal do Piaui (UFPI), Teresina, PI (Brazil). Centro de Ciencias da Natureza. Departamento de Quimica; David, Juceni Pereira [Universidade Federal da Bahia (UFBA), Salvador, BA (Brazil). Faculdade de Farmacia; David, Jorge Mauricio; Lima, Luciano Silva [Universidade Federal da Bahia (UFBA), Salvador, BA (Brazil). Instituto de Quimica

2013-09-01

This work describes the isolation of an active flavonoid fraction and identification of isorhamnetin 3-O-{beta}-D-(6''-acetyl)- alactopyranoside from flowers of B. perennis, and also the evaluation of anticholinesterase (AChE) activity of ethanolic extract from flowers (EEF) and the active fraction. The chemical structure of the flavonoid was defined on the basis of spectroscopic {sup 1}H NMR, IR and UV data. EEF or flavonoid reduces AChE activity in vivo, while flavonoid also reduces AChE activity in vitro, showing a value of 1.49 {mu}M for 50% inhibitory concentration (IC{sub 50}), suggesting potential use as an insecticide or in the treatment of neurodegenerative diseases such as Alzheimer's disease. (author)

From Genome-Wide Association Study to Phenome-Wide Association Study: New Paradigms in Obesity Research.

Science.gov (United States)

Zhang, Y-P; Zhang, Y-Y; Duan, D D

2016-01-01

Obesity is a condition in which excess body fat has accumulated over an extent that increases the risk of many chronic diseases. The current clinical classification of obesity is based on measurement of body mass index (BMI), waist-hip ratio, and body fat percentage. However, these measurements do not account for the wide individual variations in fat distribution, degree of fatness or health risks, and genetic variants identified in the genome-wide association studies (GWAS). In this review, we will address this important issue with the introduction of phenome, phenomics, and phenome-wide association study (PheWAS). We will discuss the new paradigm shift from GWAS to PheWAS in obesity research. In the era of precision medicine, phenomics and PheWAS provide the required approaches to better definition and classification of obesity according to the association of obese phenome with their unique molecular makeup, lifestyle, and environmental impact. Copyright © 2016 Elsevier Inc. All rights reserved.

Distribution and chemotaxonomic significance of phenolic compounds in Spermacoce verticillata (L. G. Mey

Directory of Open Access Journals (Sweden)

Iasmim C. Lima

2014-02-01

Full Text Available Context: Spermacoce verticillata, known as “poaia and vassourinha de botão”, is a species widely used in Brazilian traditional medicine as anti-inflammatory, antipyretic and analgesic. It is a native species, small, upright perennial, and broadly distributed throughout Brazil. Until now, few chemical studies have focused on the phenolic composition of this species. Aims: Evaluate the phytochemical profile of phenolic compounds from Spermacoce verticillata and search new compounds that have chemotaxonomic significance. Methods: Leaves of S. verticillata were extracted using distilled water. The extract (SVL was purified by several chromatography processes. Extract and compounds were analyzed by HPLC-DAD and NMR. Results: Phytochemical analysis led to identification, for the first time, of three compounds (1-3 for the specie. Chlorogenic acid (1 was identified by HPLC-DAD compared with reported in the literature. Quercetin-3-O-rutinoside (rutin (2 and kaempferol-3-O-rutinoside (3 were isolated from butanolic fraction and identified by spectroscopic analysis comparison with data reported in the literature. The flavonoid rutin is the major compound in SVL followed by kaempferol-3-O-rutinoside and chlorogenic acid. Conclusions: This is the first report for these compounds (1-3 in S. verticillata. The presence of these three new compounds indicates chemical markers of the species for this genus and family. This information is extremely important because increases the resources for chemotaxonomic classification of these species.

Seasonal Variation of Provitamin D2 and Vitamin D2 in Perennial Ryegrass (Lolium perenne L.)

DEFF Research Database (Denmark)

Jäpelt, Rie Bak; Didion, Thomas; Smedsgaard, Jørn

2011-01-01

Ergosterol (provitamin D(2)) is converted to vitamin D(2) in grass by exposure to UV light. Six varieties of perennial ryegrass (Lolium perenne L.) were harvested four times during the season, and the contents of vitamin D(2) and ergosterol were analyzed by a sensitive and selective liquid...... chromatography tandem mass spectrometry method. Weather factors were recorded, and a principal component analysis was performed to study which factors were important for the formation of vitamin D(2). The results suggest that a combination of weather factors is involved and that the contents of ergosterol...... and vitamin D(2) change more than a factor of 10 during the season. These results demonstrate that grass potentially can be a significant source of vitamin D for grazing animals and animals fed on silage and hay....

Estimating the energy requirements and CO{sub 2} emissions from production of the perennial grasses miscanthus, switchgrass and reed canary grass

Energy Technology Data Exchange (ETDEWEB)

Bullard, M.; Metcalfe, P.

2001-07-01

The perennial grasses miscanthus, reed canary and swithchgrass have attractions as energy crops in the United Kingdom: all have low demand for fertilizer and pesticide, and are harvested annually. Research on energy ratios and carbon ratios of the grasses is reported. A Microsoft Excel-based model was developed (from an ADAS database) and the input calculations and assumptions are explained. The study demonstrated the attractions of theses grasses as a source of fuel. The results agreed with those from a model developed for the SRC.

So Wide a Web, So Little Time.

Science.gov (United States)

McConville, David; And Others

1996-01-01

Discusses new trends in the World Wide Web. Highlights include multimedia; digitized audio-visual files; compression technology; telephony; virtual reality modeling language (VRML); open architecture; and advantages of Java, an object-oriented programming language, including platform independence, distributed development, and pay-per-use software.…

Extreme value distributions

CERN Document Server

Ahsanullah, Mohammad

2016-01-01

The aim of the book is to give a through account of the basic theory of extreme value distributions. The book cover a wide range of materials available to date. The central ideas and results of extreme value distributions are presented. The book rwill be useful o applied statisticians as well statisticians interrested to work in the area of extreme value distributions.vmonograph presents the central ideas and results of extreme value distributions.The monograph gives self-contained of theory and applications of extreme value distributions.

Genome-Wide Identification and Characterization of Four Gene Families Putatively Involved in Cadmium Uptake, Translocation and Sequestration in Mulberry

Directory of Open Access Journals (Sweden)

Wei Fan

2018-06-01

Full Text Available The zinc-regulated transporters, iron-regulated transporter-like proteins (ZIPs, the natural resistance and macrophage proteins (NRAMP, the heavy metal ATPases (HMAs and the metal tolerance or transporter proteins (MTPs families are involved in cadmium (Cd uptake, translocation and sequestration in plants. Mulberry (Morus L., one of the most ecologically and economically important (as a food plant for silkworm production genera of perennial trees, exhibits excellent potential for remediating Cd-contaminated soils. However, there is no detailed information about the genes involved in Cd2+ transport in mulberry. In this study, we identified 31 genes based on a genome-wide analysis of the Morus notabilis genome database. According to bioinformatics analysis, the four transporter gene families in Morus were distributed in each group of the phylogenetic tree, and the gene exon/intron structure and protein motif structure were similar among members of the same group. Subcellular localization software predicted that these transporters were mainly distributed in the plasma membrane and the vacuolar membrane, with members of the same group exhibiting similar subcellular locations. Most of the gene promoters contained abiotic stress-related cis-elements. The expression patterns of these genes in different organs were determined, and the patterns identified, allowing the categorization of these genes into four groups. Under low or high-Cd2+ concentrations (30 μM or 100 μM, respectively, the transcriptional regulation of the 31 genes in root, stem and leaf tissues of M. alba seedlings differed with regard to tissue and time of peak expression. Heterologous expression of MaNRAMP1, MaHMA3, MaZIP4, and MaIRT1 in Saccharomyces cerevisiae increased the sensitivity of yeast to Cd, suggested that these transporters had Cd transport activity. Subcellular localization experiment showed that the four transporters were localized to the plasma membrane of yeast and

Architecture and Fault Identification of Wide-area Protection System

Directory of Open Access Journals (Sweden)

Yuxue Wang

2012-09-01

Full Text Available Wide-area protection system (WAPS is widely studied for the purpose of improvng the performance of conventional backup protection. In this paper, the system architecture of WAPS is proposed and its key technologies are discussed in view of engineering projects. So a mixed structurecentralized-distributed structure which is more suitable for WAPS in limited power grid region, is obtained based on the advantages of the centralized structure and distributed structure. Furthermore, regional distance protection algorithm was taken as an example to illustrate the functions of the constituent units. Faulted components can be detected based on multi-source imformation fuse in the algorithm. And the algorithm cannot only improve the selectivity, the rapidity, and the reliability of relaying protection but also has high fault tolerant capability. A simulation of 220 kV grid systems in Easter Hubei province shows the effectiveness of the wide-area protection system presented by this paper.

Fitossociologia de uma área de floresta estacional perenifólia na fazenda Amoreiras, Querência, MT Seasonal perennial forest site phytossociology in the amareiras farm, Querência, Mato Grosso state, Brazil

Directory of Open Access Journals (Sweden)

Sustanis Horn Kunz

2010-08-01

Full Text Available As florestas do sul da Amazônia, onde se encontra a Floresta Estacional Perenifólia, têm grande influência sobre a manutenção do equilíbrio físico regional e são as que mais estão ameaçadas pela ação antrópica, além de serem pouco conhecidas em relação à sua estrutura. Diante disso, objetivou-se estudar a estrutura fitossociológica de um trecho de Floresta Estacional Perenifólia na Bacia do Rio das Pacas em Querência, MT. A amostragem da vegetação consistiu na distribuição de 200 pontos quadrantes, sendo amostrados os indivíduos com diâmetro à altura de 1,30 m do solo (DAP ? 10 cm. A densidade total da área amostrada foi de 736 ind./ha, distribuídos em 58 espécies, 45 gêneros e 31 famílias. As espécies de maior Valor de Importância (VI, Ocotea leucoxylon (Sw. Laness., Trattinickia glaziovii Swart, Ouratea discophora Ducke, Xylopia amazonica R.E. Fr. e Myrcia multiflora (Lam. DC. corresponderam a 28,45% do VI total e também ocorreram em outros trechos de Floresta Estacional Perenifólia em Gaúcha do Norte, MT, porém não com a mesma representatividade. O índice de Shannon (3,51 pode ser considerado baixo por se tratar de Floresta Amazônica, mas a equabilidade de Pielou (0,86 evidenciou que a comunidade arbórea apresentava alta heterogeneidade florística.The Southern Amazon forests, where the Seasonal Perennial Forest occurs, has great influence on the maintenance of the regional physical equilibrium and they are among forests most threatened by anthropic action and are little known in relation to their structure. In this context, the objective of this work was to study phytosociological structure of a Seasonal Perennial Forest area in the Rio das Pacas Basin at Querência, state of Mato Grosso, Brazil. The vegetation sampling was composed of the distribution of 200 center quarter points, all individuals with DAP (diameter to height breast equal or superior to 10 cm were considered. The total density of

Temperature profile data from XBT casts from a world-wide distribution from the SEA-LAND NAVIGATOR and other platforms from 21 September 2000 to 18 March 2002 (NODC Accession 0000696)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profiles were collected by deploying XBT casts from the SEA-LAND NAVIGATOR and other platforms over a world-wide distribution from 21 September 2000 to...

Temperature and nutrients data collected using bottle casts from the SKIF and other platforms in a World-wide distribution from 06 July 1962 to 08 January 1990 (NODC Accession 0000856)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature and nutrients data were collected using bottle casts in a World-wide distribution from SKIF and other platforms. Data were collected from 06 July 1962 to...

Environmental impact of converting Conservation Reserve Program land to perennial bioenergy crops in Illinois.

Science.gov (United States)

Blanc-Betes, E.; Hudiburg, T. W.; Khanna, M.; DeLucia, E. H.

2017-12-01

Reducing dependence on fossil fuels by the 20% by 2022 mandated by the Energy Independence and Security Act would require 35 billion Ga of ethanol and the loss of 9 to 12 Mha of food producing land to biofuel production, challenging our ability to develop a sustainable bioenergy source while meeting the food demands of a growing population. There are currently 8.5 Mha of land enrolled in the Conservation Reserve Program (CRP), a US government funded program to incentivize the retirement of environmentally sensitive cropland out of conventional crop production. About 63% of CRP land area could potentially be converted to energy crops, contributing to biofuel targets without displacing food. With high yields and low fertilization and irrigation requirements, perennial cellulosic crops (e.g. switchgrass and Miscanthus) not only would reduce land requirements by up to 15% compared to prairies or corn-based biofuel, but also serve other conservation goals such as C sequestration in soils, and water and air quality improvement. Here, we use the DayCent biogeochemical model to assess the potential of CRP land conversion to switchgrass or Miscanthus to provide a sustainable source of biofuel, reduce GHG emissions and increase soil organic carbon (SOC) storage in the area of Illinois, which at present contributes to 10% of the biofuel production in the US. Model simulations indicate that the replacement of traditional corn-soy rotation with CRP reduces GHG emissions by 3.3 Mg CO2-eq ha-1 y-1 and increases SOC storage at a rate of 0.5 Mg C ha-1 y-1. Conversion of CRP land to cellulosic perennials would further reduce GHG emissions by 1.1 Mg CO2-eq ha-1 y-1 for switchgrass and 6.2 Mg CO2-eq ha-1 y-1 for Miscanthus, and increase C sequestration in soils (1.7 Tg C for switchgrass and 7.7 Tg C for Miscanthus in 30 years). Cellulosic energy crops would increase average annual yields by approximately 5.6 Mg ha-1 for switchgrass and 13.6 Mg ha-1 for Miscanthus, potentially

Widely tunable Sampled Grating Distributed Bragg Reflector Quantum Cascade laser for gas spectroscopy applications

Science.gov (United States)

Diba, Abdou Salam

Since the advent of semiconductor lasers, the development of tunable laser sources has been subject of many efforts in industry and academia arenas. This interest towards broadly tunable lasers is mainly due to the great promise they have in many applications ranging from telecommunication, to environmental science and homeland security, just to name a few. After the first demonstration of quantum cascade laser (QCL) in the early nineties, QCL has experienced a rapid development, so much so that QCLs are now the most reliable and efficient laser source in the Mid-IR range covering between 3 microm to 30 microm region of the electromagnetic spectrum. QCLs have almost all the desirable characteristics of a laser for spectroscopy applications such as narrow spectral linewidth ideal for high selectivity measurement, high power enabling high sensitivity sensing and more importantly they emit in the finger-print region of most of the trace gases and large molecules. The need for widely tunable QCLs is now more pressing than ever before. A single mode quantum cascade laser (QCL) such as a distributed feedback (DFB) QCL, is an ideal light source for gas sensing in the MIR wavelength range. Despite their performance and reliability, DFB QCLs are limited by their relatively narrow wavelength tuning range determined by the thermal rollover of the laser. An external cavity (EC) QCL, on the other hand, is a widely tunable laser source, and so far is the choice mid-infrared single frequency light sources for detecting multiple species/large molecules. However, EC QCLs can be complex, bulky and expensive. In the quest for finding alternative broadly wavelength tunable sources in the mid-infrared, many monolithic tunable QCLs are recently proposed and fabricated, including SG-DBR, DFB-Arrays, Slot-hole etc. and they are all of potentially of interest as a candidate for multi-gas sensing and monitoring applications, due to their large tuning range (>50 cm-1), and potentially low

Governance and assessment in a widely distributed medical education program in Australia.

Science.gov (United States)

Solarsh, Geoff; Lindley, Jennifer; Whyte, Gordon; Fahey, Michael; Walker, Amanda

2012-06-01

The learning objectives, curriculum content, and assessment standards for distributed medical education programs must be aligned across the health care systems and community contexts in which their students train. In this article, the authors describe their experiences at Monash University implementing a distributed medical education program at metropolitan, regional, and rural Australian sites and an offshore Malaysian site, using four different implementation models. Standardizing learning objectives, curriculum content, and assessment standards across all sites while allowing for site-specific implementation models created challenges for educational alignment. At the same time, this diversity created opportunities to customize the curriculum to fit a variety of settings and for innovations that have enriched the educational system as a whole.Developing these distributed medical education programs required a detailed review of Monash's learning objectives and curriculum content and their relevance to the four different sites. It also required a review of assessment methods to ensure an identical and equitable system of assessment for students at all sites. It additionally demanded changes to the systems of governance and the management of the educational program away from a centrally constructed and mandated curriculum to more collaborative approaches to curriculum design and implementation involving discipline leaders at multiple sites.Distributed medical education programs, like that at Monash, in which cohorts of students undertake the same curriculum in different contexts, provide potentially powerful research platforms to compare different pedagogical approaches to medical education and the impact of context on learning outcomes.

Binary star statistics: the mass ratio distribution for very wide systems

International Nuclear Information System (INIS)

Trimble, V.

1987-01-01

The distribution of mass ratios for a sample of common proper motion (CPM) binaries is determined and compared with that of 798 visual binaries (VB's) studied earlier, in hopes of answering the question: Can the member stars of these systems have been drawn at random from the normal initial mass function for single stars? The observed distributions peak strongly toward q = 1.0 for both kinds of systems, but less strongly for the CPM's than for the VB's. Due allowance having been made for assorted observational selection effects, it seems quite probable that the CPM's represent the observed part of a population drawn at random from the normal IMF, while the VB's are much more difficult to interpret that way and could, perhaps, result from a formation mechanism that somewhat favors sytems with roughly equal components. (author)

Wide-band low-noise distributed front-end for multi-gigabit CPFSK receivers

DEFF Research Database (Denmark)

Petersen, Anders Kongstad; Ebskamp, F; Pedersen, Rune Johan Skullerud

1994-01-01

In this paper a distributed optical front-end amplifier for a coherent optical CPFSK receiver is presented. The measured average input noise current density is 20 pA/√(Hz) in a 3-13 GHz bandwidth. This is the lowest value reported for a distributed optical front-end in this frequency range....... The front-end is tested in a system set-up at a bit rate of 2.5 Gbit/s and a receiver sensitivity of -41.5 dBm is achieved at a 10-9 bit error rate...

An approach for characterizing the distribution of shrubland ecosystem components as continuous fields as part of NLCD

Science.gov (United States)

Xian, George Z.; Homer, Collin G.; Meyer, Debbie; Granneman, Brian J.

2013-01-01

Characterizing and quantifying distributions of shrubland ecosystem components is one of the major challenges for monitoring shrubland vegetation cover change across the United States. A new approach has been developed to quantify shrubland components as fractional products within National Land Cover Database (NLCD). This approach uses remote sensing data and regression tree models to estimate the fractional cover of shrubland ecosystem components. The approach consists of three major steps: field data collection, high resolution estimates of shrubland ecosystem components using WorldView-2 imagery, and coarse resolution estimates of these components across larger areas using Landsat imagery. This research seeks to explore this method to quantify shrubland ecosystem components as continuous fields in regions that contain wide-ranging shrubland ecosystems. Fractional cover of four shrubland ecosystem components, including bare ground, herbaceous, litter, and shrub, as well as shrub heights, were delineated in three ecological regions in Arizona, Florida, and Texas. Results show that estimates for most components have relatively small normalized root mean square errors and significant correlations with validation data in both Arizona and Texas. The distribution patterns of shrub height also show relatively high accuracies in these two areas. The fractional cover estimates of shrubland components, except for litter, are not well represented in the Florida site. The research results suggest that this method provides good potential to effectively characterize shrubland ecosystem conditions over perennial shrubland although it is less effective in transitional shrubland. The fractional cover of shrub components as continuous elements could offer valuable information to quantify biomass and help improve thematic land cover classification in arid and semiarid areas.

Physical, chemical, meteorological, and nutrients data from bottle casts from a world-wide distribution from the YERMAK and other platforms from 15 January 1873 to 15 June 1967 (NODC Accession 0000505)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical, meteorological, and nutrients data were collected from bottle casts from the YERMAK and other platforms from a world-wide distribution from 15 January 1873...

A genome-wide expression profile of salt-responsive genes in the apple rootstock Malus zumi.

Science.gov (United States)

Li, Qingtian; Liu, Jia; Tan, Dunxian; Allan, Andrew C; Jiang, Yuzhuang; Xu, Xuefeng; Han, Zhenhai; Kong, Jin

2013-10-18

In some areas of cultivation, a lack of salt tolerance severely affects plant productivity. Apple, Malus x domestica Borkh., is sensitive to salt, and, as a perennial woody plant the mechanism of salt stress adaption will be different from that of annual herbal model plants, such as Arabidopsis. Malus zumi is a salt tolerant apple rootstock, which survives high salinity (up to 0.6% NaCl). To examine the mechanism underlying this tolerance, a genome-wide expression analysis was performed, using a cDNA library constructed from salt-treated seedlings of Malus zumi. A total of 15,000 cDNA clones were selected for microarray analysis. In total a group of 576 cDNAs, of which expression changed more than four-fold, were sequenced and 18 genes were selected to verify their expression pattern under salt stress by semi-quantitative RT-PCR. Our genome-wide expression analysis resulted in the isolation of 50 novel Malus genes and the elucidation of a new apple-specific mechanism of salt tolerance, including the stabilization of photosynthesis under stress, involvement of phenolic compounds, and sorbitol in ROS scavenging and osmoprotection. The promoter regions of 111 genes were analyzed by PlantCARE, suggesting an intensive cross-talking of abiotic stress in Malus zumi. An interaction network of salt responsive genes was constructed and molecular regulatory pathways of apple were deduced. Our research will contribute to gene function analysis and further the understanding of salt-tolerance mechanisms in fruit trees.

Physiological and morphological adaptations of herbaceous perennial legumes allow differential access to sources of varyingly soluble phosphate.

Science.gov (United States)

Pang, Jiayin; Yang, Jiyun; Lambers, Hans; Tibbett, Mark; Siddique, Kadambot H M; Ryan, Megan H

2015-08-01

The aim of this study was to investigate the capacity of three perennial legume species to access sources of varyingly soluble phosphorus (P) and their associated morphological and physiological adaptations. Two Australian native legumes with pasture potential (Cullen australasicum and Kennedia prostrata) and Medicago sativa cv. SARDI 10 were grown in sand under two P levels (6 and 40 µg P g(-1) ) supplied as Ca(H2 PO4 )2 ·H2 O (Ca-P, highly soluble, used in many fertilizers) or as one of three sparingly soluble forms: Ca10 (OH)2 (PO4 )6 (apatite-P, found in relatively young soils; major constituent of rock phosphate), C6 H6 O24 P6 Na12 (inositol-P, the most common form of organic P in soil) and FePO4 (Fe-P, a poorly-available inorganic source of P). All species grew well with soluble P. When 6 µg P g(-1) was supplied as sparingly soluble P, plant dry weight (DW) and P uptake were very low for C. australasicum and M. sativa (0.1-0.4 g DW) with the exception of M. sativa supplied with apatite-P (1.5 g). In contrast, K. prostrata grew well with inositol-P (1.0 g) and Fe-P (0.7 g), and even better with apatite-P (1.7 g), similar to that with Ca-P (1.9 g). Phosphorus uptake at 6 µg P g(-1) was highly correlated with total root length, total rhizosphere carboxylate content and total rhizosphere acid phosphatase (EC 3.1.3.2) activity. These findings provide strong indications that there are opportunities to utilize local Australian legumes in low P pasture systems to access sparingly soluble soil P and increase perennial legume productivity, diversity and sustainability. © 2014 Scandinavian Plant Physiology Society.

Lake-wide distribution of Dreissena in Lake Michigan, 1999

Science.gov (United States)

Fleischer, Guy W.; DeSorcie, Timothy J.; Holuszko, Jeffrey D.

2001-01-01

The Great Lakes Science Center has conducted lake-wide bottom trawl surveys of the fish community in Lake Michigan each fall since 1973. These systematic surveys are performed at depths of 9 to 110 m at each of seven index sites around Lake Michigan. Zebra mussel (Dreissena polymorpha) populations have expanded to all survey locations and at a level to sufficiently contribute to the bottom trawl catches. The quagga (Dreissena bugensis), recently reported in Lake Michigan, was likely in the catches though not recognized. Dreissena spp. biomass ranged from about 0.6 to 15 kg/ha at the various sites in 1999. Dreissenid mussels were found at depths of 9 to 82 m, with their peak biomass at 27 to 46 m. The colonization of these exotic mussels has ecological implications as well as potential ramifications on the ability to sample fish consistently and effectively with bottom trawls in Lake Michigan.

Crop-associated virus reduces the rooting depth of non-crop perennial native grass more than non-crop-associated virus with known viral suppressor of RNA silencing (VSR).

Science.gov (United States)

Malmstrom, Carolyn M; Bigelow, Patrick; Trębicki, Piotr; Busch, Anna K; Friel, Colleen; Cole, Ellen; Abdel-Azim, Heba; Phillippo, Colin; Alexander, Helen M

2017-09-15

As agricultural acreage expanded and came to dominate landscapes across the world, viruses gained opportunities to move between crop and wild native plants. In the Midwestern USA, virus exchange currently occurs between widespread annual Poaceae crops and remnant native perennial prairie grasses now under consideration as bioenergy feedstocks. In this region, the common aphid species Rhopalosiphum padi L. (the bird cherry-oat aphid) transmits several virus species in the family Luteoviridae, including Barley yellow dwarf virus (BYDV-PAV, genus Luteovirus) and Cereal yellow dwarf virus (CYDV-RPV and -RPS, genus Polerovirus). The yellow dwarf virus (YDV) species in these two genera share genetic similarities in their 3'-ends, but diverge in the 5'-regions. Most notably, CYDVs encode a P0 viral suppressor of RNA silencing (VSR) absent in BYDV-PAV. Because BYDV-PAV has been reported more frequently in annual cereals and CYDVs in perennial non-crop grasses, we examine the hypothesis that the viruses' genetic differences reflect different affinities for crop and non-crop hosts. Specifically, we ask (i) whether CYDVs might persist within and affect a native non-crop grass more strongly than BYDV-PAV, on the grounds that the polerovirus VSR could better moderate the defenses of a well-defended perennial, and (ii) whether the opposite pattern of effects might occur in a less defended annual crop. Because previous work found that the VSR of CYDV-RPS possessed greater silencing suppressor efficiency than that of CYDV-RPV, we further explored (iii) whether a novel grass-associated CYDV-RPS isolate would influence a native non-crop grass more strongly than a comparable CYDV-RPV isolate. In growth chamber studies, we found support for this hypothesis: only grass-associated CYDV-RPS stunted the shoots and crowns of Panicum virgatum L. (switchgrass), a perennial native North American prairie grass, whereas crop-associated BYDV-PAV (and coinfection with BYDV-PAV and CYDV-RPS) most

Charged-particle multiplicity distributions over a wide pseudorapidity range in proton-proton collisions at √(s) = 0.9, 7, and 8 TeV

Energy Technology Data Exchange (ETDEWEB)

Acharya, S. [Variable Energy Cyclotron Centre, Kolkata (India); Adamova, D. [Academy of Sciences of the Czech Republic, Rez u Prahy (Czech Republic). Nuclear Physics Inst.; Adolfsson, J. [Lund Univ. (Sweden). Div. of Experimental High Energy Physics; Collaboration: ALICE Collaboration; and others

2017-12-15

We present the charged-particle multiplicity distributions over a wide pseudorapidity range (-3.4<η<5.0) for pp collisions at √(s) = 0.9, 7, and 8 TeV at the LHC. Results are based on information from the Silicon Pixel Detector and the Forward Multiplicity Detector of ALICE, extending the pseudorapidity coverage of the earlier publications and the high-multiplicity reach. The measurements are compared to results from the CMS experiment and to PYTHIA, PHOJET and EPOS LHC event generators, as well as IP-Glasma calculations. (orig.)

Root proliferation in native perennial grasses of arid Patagonia, Argentina

Institute of Scientific and Technical Information of China (English)

Yanina A. TORRES; Mara M. MUJICA; Sandra S. BAIONI; Jos ENTO; Mara N. FIORETTI; Guillermo TUCAT; Carlos A. BUSSO; Oscar A. MONTENEGRO; Leticia ITHURRART; Hugo D. GIORGETTI; Gustavo RODRGUEZ; Diego BENTIVEGNA; Roberto E. BREVEDAN; Osvaldo A. FERNNDEZ

2014-01-01

Pappophorum vaginatum is the most abundant C4 perennial grass desirable to livestock in rangelands of northeastern Patagonia, Argentina. We hypothesized that (1) defoliation reduce net primary productivity, and root length density and weight in the native species, and (2) root net primary productivity, and root length density and weight, are greater in P. vaginatum than in the other, less desirable, native species (i.e., Aristida spegazzinii, A. subulata and Sporobolus cryptandrus). Plants of all species were either exposed or not to a severe defoliation twice a year during two growing seasons. Root proliferation was measured using the cylinder method. Cylindrical, iron structures, wrapped up using nylon mesh, were buried diagonally from the periphery to the center on individual plants. These structures, initially filled with soil without any organic residue, were dug up from the soil on 25 April 2008, after two successive defoliations in mid-spring 2007. During the second growing season (2008-2009), cylinders were destructively harvested on 4 April 2009, after one or two defoliations in mid-and/or late-spring, respectively. Roots grown into the cylinders were obtained after washing the soil manually. Defoliation during two successive years did reduce the study variables only after plants of all species were defoliated twice, which supported the first hypothesis. The greater root net primary productivity, root length den-sity and weight in P. vaginatum than in the other native species, in support of the second hypothesis, could help to explain its greater abundance in rangelands of Argentina.

Large-scale implementation of disease control programmes: a cost-effectiveness analysis of long-lasting insecticide-treated bed net distribution channels in a malaria-endemic area of western Kenya-a study protocol.

Science.gov (United States)

Gama, Elvis; Were, Vincent; Ouma, Peter; Desai, Meghna; Niessen, Louis; Buff, Ann M; Kariuki, Simon

2016-11-21

Historically, Kenya has used various distribution models for long-lasting insecticide-treated bed nets (LLINs) with variable results in population coverage. The models presently vary widely in scale, target population and strategy. There is limited information to determine the best combination of distribution models, which will lead to sustained high coverage and are operationally efficient and cost-effective. Standardised cost information is needed in combination with programme effectiveness estimates to judge the efficiency of LLIN distribution models and options for improvement in implementing malaria control programmes. The study aims to address the information gap, estimating distribution cost and the effectiveness of different LLIN distribution models, and comparing them in an economic evaluation. Evaluation of cost and coverage will be determined for 5 different distribution models in Busia County, an area of perennial malaria transmission in western Kenya. Cost data will be collected retrospectively from health facilities, the Ministry of Health, donors and distributors. Programme-effectiveness data, defined as the number of people with access to an LLIN per 1000 population, will be collected through triangulation of data from a nationally representative, cross-sectional malaria survey, a cross-sectional survey administered to a subsample of beneficiaries in Busia County and LLIN distributors' records. Descriptive statistics and regression analysis will be used for the evaluation. A cost-effectiveness analysis will be performed from a health-systems perspective, and cost-effectiveness ratios will be calculated using bootstrapping techniques. The study has been evaluated and approved by Kenya Medical Research Institute, Scientific and Ethical Review Unit (SERU number 2997). All participants will provide written informed consent. The findings of this economic evaluation will be disseminated through peer-reviewed publications. Published by the BMJ Publishing

Effects of chicory/perennial ryegrass swards compared with perennial ryegrass swards on the performance and carcass quality of grazing beef steers.

Directory of Open Access Journals (Sweden)

Christina L Marley

Full Text Available An experiment investigated whether the inclusion of chicory (Cichorium intybus in swards grazed by beef steers altered their performance, carcass characteristics or parasitism when compared to steers grazing perennial ryegrass (Lolium perenne. Triplicate 2-ha plots were established with a chicory/ryegrass mix or ryegrass control. Forty-eight Belgian Blue-cross steers were used in the first grazing season and a core group (n = 36 were retained for finishing in the second grazing season. The experiment comprised of a standardisation and measurement period. During standardisation, steers grazed a ryegrass/white clover pasture as one group. Animals were allocated to treatment on the basis of liveweight, body condition and faecal egg counts (FEC determined 7 days prior to the measurement period. The measurement period ran from 25 May until 28 September 2010 and 12 April until 11 October 2011 in the first and second grazing year. Steers were weighed every 14 days at pasture or 28 days during housing. In the first grazing year, faecal samples were collected for FEC and parasite cultures. At the end of the first grazing year, individual blood samples were taken to determine O. ostertagi antibody and plasma pepsinogen levels. During winter, animals were housed as one group and fed silage. In the second grazing year, steers were slaughtered when deemed to reach fat class 3. Data on steer performance showed no differences in daily live-weight gain which averaged 1.04 kg/day. The conformation, fat grade and killing out proportion of beef steers grazing chicory/ryegrass or ryegrass were not found to differ. No differences in FEC, O. ostertagi antibody or plasma pepsinogen levels of beef steers grazing either chicory/ryegrass or ryegrass were observed. Overall, there were no detrimental effects of including chicory in swards grazed by beef cattle on their performance, carcass characteristics or helminth parasitism, when compared with steers grazing ryegrass.

Distribution and Resources of the Medicinal Plant Colchicum autumnale L. in Bulgaria

Directory of Open Access Journals (Sweden)

Ivanka Semerdjieva

2017-06-01

Full Text Available Colchicum autumnale (Colchicaceae is a perennial geophyte and a medicinal plant. Its biomass is collected for industrial uses for obtaining the alkaloids colchicine and demecolcine. The objective of the present study was to estimate the distribution and potential resources of C. autumnale populations in Bulgaria in terms of their sustainable use. Monitoring of habitats was carried out in concrete harvesting areas. The distribution of the populations and the amount of drug production in specific sites and conditions were studied. In 2014-2015, eleven localities were established in seven floristic regions, spread on an area of 498000 m². Seed resources obtained from the different populations ranged from 3.57 g to 12225 g. The seed yield depends on the environmental conditions, the number of plants per m², the number of fruit capsules per plant and the weight of the seeds contained in them. Changes in the management approach to habitats occupied by C. autumnale caused degradation of the areas, resulting in the decrease of the population density of the species.

Physical and chemical data collected using bottle casts in a World-wide distribution from NOAA Ship RESEARCHER and other platforms from 1911-11-11 to 1990-03-18 (NODC Accession 9600072)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical and chemical data were collected using bottle casts in a World-wide distribution from NOAA Ship RESEARCHER and other platforms from 11 November 1911 to 18...

Transcriptome resources for the perennial sunflower Helianthus maximiliani obtained from ecologically divergent populations.

Science.gov (United States)

Kawakami, Takeshi; Darby, Brian J; Ungerer, Mark C

2014-07-01

Next-generation sequencing (NGS) technologies provide a rapid means to generate genomic resources for species exhibiting interesting ecological and evolutionary variation but for which such resources are scant or nonexistent. In the current report, we utilize 454 pyrosequencing to obtain transcriptome information for multiple individuals and tissue types from geographically disparate and ecologically differentiated populations of the perennial sunflower species Helianthus maximiliani. A total of 850 275 raw reads were obtained averaging 355 bp in length. Reads were assembled, postprocessing, into 16 681 unique contigs with an N50 of 898 bp and a total length of 13.6 Mb. A majority (67%) of these contigs were annotated based on comparison with the Arabidopsis thaliana genome (TAIR10). Contigs were identified that exhibit high similarity to genes associated with natural variation in flowering time and freezing tolerance in other plant species and will facilitate future studies aimed at elucidating the molecular basis of clinal life history variation and adaptive differentiation in H. maximiliani. Large numbers of gene-associated simple sequence repeats (SSRs) and single-nucleotide polymorphisms (SNPs) also were identified that can be deployed in mapping and population genomic analyses. © 2014 John Wiley & Sons Ltd.

Genetic analyses place most Spanish isolates of Beauveria bassiana in a molecular group with word-wide distribution

Science.gov (United States)

2011-01-01

Background The entomopathogenic anamorphic fungus Beauveria bassiana is currently used as a biocontrol agent (BCA) of insects. Fifty-seven Beauveria bassiana isolates -53 from Spain- were characterized, integrating group I intron insertion patterns at the 3'-end of the nuclear large subunit ribosomal gene (LSU rDNA) and elongation factor 1-alpha (EF1-α) phylogenetic information, in order to assess the genetic structure and diversity of this Spanish collection of B. bassiana. Results Group I intron genotype analysis was based on the four highly conserved insertion sites of the LSU (Ec2653, Ec2449, Ec2066, Ec1921). Of the 16 possible combinations/genotypes, only four were detected, two of which were predominant, containing 44 and 9 members out of 57 isolates, respectively. Interestingly, the members of the latter two genotypes showed unique differences in their growth temperatures. In follow, EF1-α phylogeny served to classify most of the strains in the B. bassiana s.s. (sensu stricto) group and separate them into 5 molecular subgroups, all of which contained a group I intron belonging to the IC1 subtype at the Ec1921 position. A number of parameters such as thermal growth or origin (host, geographic location and climatic conditions) were also examined but in general no association could be found. Conclusion Most Spanish B. bassiana isolates (77.2%) are grouped into a major phylogenetic subgroup with word-wide distribution. However, high phylogenetic diversity was also detected among Spanish isolates from close geographic zones with low climatic variation. In general, no correlation was observed between the molecular distribution and geographic origin or climatic characteristics where the Spanish B. bassiana isolates were sampled. PMID:21521527

Morphological characterization and gene expression profiling during bud development in a tropical perennial, Litchi chinensis Sonn.

Directory of Open Access Journals (Sweden)

Huifeng Zhang

2016-10-01

Full Text Available Tropical evergreen perennials undergo recurrent flush growth, and their terminal buds alternate between growth and dormancy. In sharp contrast to intensive studies on bud development in temperate deciduous trees, there is little information about bud development regulation in tropical trees. In this study, litchi (Litchi chinensis Sonn. was used as a model tropical perennial for morphological characterization and transcriptomic analysis of bud development. Litchi buds are naked with apical meristem embraced by rudimentary leaves, which are brown at dormant stage (Stage I. They swell and turn greenish as buds break (Stage II, and as growth accelerates, the rudimentary leaves elongate and open exposing the inner leaf primodia. With the outgrowth of the needle-like leaflets, bud growth reaches a maximum (Stage III. When leaflets expand, bud growth cease with the abortion of the rudimentary leaves at upper positions (Stage IV. Then buds turn brown and reenter dormant status. Budbreak occurs again when new leaves become hard green. Buds at four stages (Stage I to IV were collected for respiration measurements and in-depth RNA sequencing. Respiration rate was lowest at Stage I and highest at Stage II, decreasing towards growth cessation. RNA sequencing obtained over 5 Gb data from each of the bud samples and de novo assembly generated a total of 59999 unigenes, 40119 of which were annotated. Pair-wise comparison of gene expression between stages, gene profiling across stages, GO/KEGG enrichment analysis, and the expression patterns of 17 major genes highlighted by principal component (PC analysis displayed significant changes in stress resistance, hormone signal pathways, circadian rhythm, photosynthesis, cell division, carbohydrate metabolism, programmed cell death during bud development, which might be under epigenetic control involving chromatin methylation. The qPCR results of 8 selected unigenes with high PC scores agreed with the RPKM values

Anticholinesterase activity and chemical profile of an active chromatographic fraction of ethanolic extract from Bellis perennis L. (Asteraceae) flowers

International Nuclear Information System (INIS)

Marques, Thiago Henrique Costa; Santos, Pauline Sousa dos; Freitas, Rivelilson Mendes de; Carvalho, Rusbene Bruno Fonseca de; Melo, Cassio Herbert Santos de; David, Juceni Pereira; David, Jorge Mauricio; Lima, Luciano Silva

2013-01-01

This work describes the isolation of an active flavonoid fraction and identification of isorhamnetin 3-O-β-D-(6’’-acetyl)- alactopyranoside from flowers of B. perennis, and also the evaluation of anticholinesterase (AChE) activity of ethanolic extract from flowers (EEF) and the active fraction. The chemical structure of the flavonoid was defined on the basis of spectroscopic 1 H NMR, IR and UV data. EEF or flavonoid reduces AChE activity in vivo, while flavonoid also reduces AChE activity in vitro, showing a value of 1.49 μM for 50% inhibitory concentration (IC 50 ), suggesting potential use as an insecticide or in the treatment of neurodegenerative diseases such as Alzheimer’s disease. (author)

Comparative seasonal variations of spectral signatures of broad-leaved and coniferous stands from Landsat data. Comparison with other perennial environments

International Nuclear Information System (INIS)

Chaume, R.; Combeau, A.

1984-01-01

Spectral signatures of two distinct forest test areas were identified from digital data including 15 LANDSAT scenes covering the same geographical area: a broad-leaved forest (oak and beech) and a coniferous forest (scotch pine). Seasonal variations of the signatures were examined and were expressed in terms of various data: date, solar height and phenological state of vegetation cover. Results were compared to these obtained from other perennial surface conditions (grassland, bare soils) . Range of the seasonal variations of radiance is noted, as well as evolutionary peculiarities on each band and between themes. Rationing of spectral bands (particularly MSS 5 and 7) and their variation with time are specified [fr

Distributed Generation (DG) practices in the US

Energy Technology Data Exchange (ETDEWEB)

NONE

2002-05-20

This document forms an annex to a report, 'Technical solutions to enable embedded generation growth', which is one of a series of studies commissioned by the UK Department of Trade and Industry into various aspects of embedded generation with the aim of supporting the development and deployment of electrical sources (particularly their ease of connection to the network) in the UK. The annex describes current practice with distributed generation in the USA. The wide range of practices relating to distributed generation and the lack of a specific government policy to encourage distributed generation are noted. The USA has a wide range of utility practices and a wide range of distributed generation practices are being attempted. The present approach, which is set against the beginnings of deregulation in the USA relies on market forces with a few subsidies.

Weighted Lomax distribution.

Science.gov (United States)

Kilany, N M

2016-01-01

The Lomax distribution (Pareto Type-II) is widely applicable in reliability and life testing problems in engineering as well as in survival analysis as an alternative distribution. In this paper, Weighted Lomax distribution is proposed and studied. The density function and its behavior, moments, hazard and survival functions, mean residual life and reversed failure rate, extreme values distributions and order statistics are derived and studied. The parameters of this distribution are estimated by the method of moments and the maximum likelihood estimation method and the observed information matrix is derived. Moreover, simulation schemes are derived. Finally, an application of the model to a real data set is presented and compared with some other well-known distributions.

A Guide to Ordinary High Water Mark (OHWM) Delineation for Non-Perennial Streams in the Western Mountains, Valleys, and Coast Region of the United States

Science.gov (United States)

2014-08-01

38 15 Remotely sensed images acquired from Google Earth and ground-based images from 2011 of a non-perennial stream in Teton County, WY...less confined. Debris flows and landslides are common in the region, accounting for much, if not most, of the sediment flux from headwater streams in...information is becoming in- creasingly available and easy to analyze via free, open-access resources such as Google Earth (www.earth.google.com). Where

Gibberellin Promotes Shoot Branching in the Perennial Woody Plant Jatropha curcas.

Science.gov (United States)

Ni, Jun; Gao, Congcong; Chen, Mao-Sheng; Pan, Bang-Zhen; Ye, Kaiqin; Xu, Zeng-Fu

2015-08-01

Strigolactone (SL), auxin and cytokinin (CK) interact to regulate shoot branching. CK has long been considered to be the only key phytohormone to promote lateral bud outgrowth. Here we report that gibberellin also acts as a positive regulator in the control of shoot branching in the woody plant Jatropha curcas. We show that gibberellin and CK synergistically promote lateral bud outgrowth, and that both hormones influence the expression of putative branching regulators, J. curcas BRANCHED1 and BRANCHED2, which are key transcription factors maintaining bud dormancy. Moreover, treatment with paclobutrazol, an inhibitor of de novo gibberellin biosynthesis, significantly reduced the promotion of bud outgrowth by CK, suggesting that gibberellin is required for CK-mediated axillary bud outgrowth. In addition, SL, a plant hormone involved in the repression of shoot branching, acted antagonistically to both gibberellin and CK in the control of lateral bud outgrowth. Consistent with this, the expression of JcMAX2, a J. curcas homolog of Arabidopsis MORE AXILLARY GROWTH 2 encoding an F-box protein in the SL signaling pathway, was repressed by gibberellin and CK treatment. We also provide physiological evidence that gibberellin also induces shoot branching in many other trees, such as papaya, indicating that a more complicated regulatory network occurs in the control of shoot branching in some perennial woody plants. © The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists.

Exogenous melatonin suppresses dark-induced leaf senescence by activating the superoxide dismutase-catalase antioxidant pathway and down-regulating chlorophyll degradation in excised leaves of perennial ryegrass (Lolium perenne L.

Directory of Open Access Journals (Sweden)

Jing Zhang

2016-10-01

Full Text Available Leaf senescence is a typical symptom in plants exposed to dark and may be regulated by plant growth regulators. The objective of this study was to determine whether exogenous application of melatonin (N-acetyl-5-methoxytryptamine suppresses dark-induced leaf senescence and the effects of melatonin on reactive oxygen species (ROS scavenging system and chlorophyll degradation pathway in perennial grass species. Mature perennial ryegrass (Lolium perenne L. cv. ‘Pinnacle’ leaves were excised and incubated in 3 mM 2-(N-morpholino ethanesulfonic buffer (pH 5.8 supplemented with melatonin or water (control and exposed to dark treatment for 8 d. Leaves treated with melatonin maintained significantly higher endogenous melatonin level, chlorophyll content, photochemical efficiency, and cell membrane stability expressed by lower electrolyte leakage and malondialdehyde (MDA content compared to the control. Exogenous melatonin treatment also reduced the transcript level of chlorophyll degradation-associated genes and senescence marker genes (LpSAG12.1, Lph36, and Lpl69 during the dark treatment. The endogenous O2- production rate and H2O2 content were significantly lower in these excised leaves treated with melatonin compared to the water control. Exogenous melatonin treatment caused increases in enzymatic activity and transcript levels of superoxide dismutase and catalase but had no significant effects on ascorbate peroxidase, glutathione reductase, dehydroascorbate reductase, and monohydroascorbate reductase. The content of non-enzymatic antioxidants, such as ascorbate and dehydroascorbate, were decreased by melatonin treatment, while the content of glutathione and oxidized glutathione was not affected by melatonin. These results suggest that the suppression of dark-induced leaf senescence by exogenous melatonin may be associated with its roles in regulating ROS scavenging through activating the superoxide dismutase-catalase enzymatic antioxidant

Predicting the distribution of Endophyllum osteospermi (Uredinales, Pucciniaceae) in Australia based on its climatic requirements and distribution in South Africa

NARCIS (Netherlands)

Wood, A.R.; Crous, P.W.; Lennox, C.L.

2004-01-01

The perennial bush Chrysanthemoides monilifera ssp. monilifera (Asteraceae) is infected by the autoecious, microcyclic rust fungus Endophyllum osteospermi. Both organisms are native to South Africa, whilst the plant has also become naturalised in Australia where it is the target of a biological

Diversity and structure of microcrustacean assemblages (Cladocera and Copepoda and limnological variability in perennial and intermittent pools in a semi-arid region, Bahia, Brazil

Directory of Open Access Journals (Sweden)

Nadson R. Simões

2011-12-01

Full Text Available Temporary wetlands undergo recurrent drought due to the scarcity of water, which disrupts the hydrological connectivity with adjacent aquatic systems. However, some environments retain water for longer periods, allowing greater persistence of the community. The current study evaluated differences in the microcrustacean assemblages and limnological variability between perennial and intermittent pools in a semi-arid region of Brazil. The abiotic features (water temperature, pH, total alkalinity, electrical conductivity and depth of intermittent pools were affected more than perennial pools due to loss of water volume. This may have contributed to a higher average richness and diversity index in some intermittent pools and differences in the structure of the assemblages. The lowest species richness and diversity were recorded where physical factors, such as a large quantity of suspended solids and variability in the electrical conductivity of the water and pH, make the environment unsuitable for these organisms. These results suggest that community development in intermittent pools is interrupted by the dry season; when the water returns, due to rainfall or rising groundwater, each pond undergoes a different process of colonization. In these circumstances, the biological importance of temporary aquatic environments is clear, since such pools provide shelters and have an important role in the maintenance of the regional diversity of aquatic environments.

Temperature, salinity, and nutrients data from CTD and bottle casts from a world-wide distribution from the ANDROMEDA and other platforms from 01 January 1923 to 31 December 1999 (NODC Accession 0000208)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — CTD and bottle data were collected from the ANDROMEDA and other platforms from a world-wide distribution from 01 January 1923 to 31 December 1999. Data were...

Temperature profile data collected using XBT and BT casts in a World-wide distribution from NOAA Ship RESEARCHER and other platforms from 1970-09-30 to 1979-08-05 (NODC Accession 8300089)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT and BT casts from NOAA Ship RESEARCHER and other platforms in a World-wide distribution from 30 September 1970 to...

Wide-field lifetime-based FRET imaging for the assessment of early functional distribution of transferrin-based delivery in breast tumor-bearing small animals

Science.gov (United States)

Sinsuebphon, Nattawut; Rudkouskaya, Alena; Barroso, Margarida; Intes, Xavier

2016-02-01

Targeted drug delivery is a critical aspect of successful cancer therapy. Assessment of dynamic distribution of the drug provides relative concentration and bioavailability at the target tissue. The most common approach of the assessment is intensity-based imaging, which only provides information about anatomical distribution. Observation of biomolecular interactions can be performed using Förster resonance energy transfer (FRET). Thus, FRET-based imaging can assess functional distribution and provide potential therapeutic outcomes. In this study, we used wide-field lifetime-based FRET imaging for the study of early functional distribution of transferrin delivery in breast cancer tumor models in small animals. Transferrin is a carrier for cancer drug delivery. Its interaction with its receptor is within a few nanometers, which is suitable for FRET. Alexa Fluor® 700 and Alexa Fluor® 750 were conjugated to holo-transferrin which were then administered via tail vein injection to the mice implanted with T47D breast cancer xenografts. Images were continuously acquired for 60 minutes post-injection. The results showed that transferrin was primarily distributed to the liver, the urinary bladder, and the tumor. The cellular uptake of transferrin, which was indicated by the level of FRET, was high in the liver but very low in the urinary bladder. The results also suggested that the fluorescence intensity and FRET signals were independent. The liver showed increasing intensity and increasing FRET during the observation period, while the urinary bladder showed increasing intensity but minimal FRET. Tumors gave varied results corresponding to their FRET progression. These results were relevant to the biomolecular events that occurred in the animals.

Distributed temperature and distributed acoustic sensing for remote and harsh environments

Science.gov (United States)

Mondanos, Michael; Parker, Tom; Milne, Craig H.; Yeo, Jackson; Coleman, Thomas; Farhadiroushan, Mahmoud

2015-05-01

Advances in opto-electronics and associated signal processing have enabled the development of Distributed Acoustic and Temperature Sensors. Unlike systems relying on discrete optical sensors a distributed system does not rely upon manufactured sensors but utilises passive custom optical fibre cables resistant to harsh environments, including high temperature applications (600°C). The principle of distributed sensing is well known from the distributed temperature sensor (DTS) which uses the interaction of the source light with thermal vibrations (Raman scattering) to determine the temperature at all points along the fibre. Distributed Acoustic Sensing (DAS) uses a novel digital optical detection technique to precisely capture the true full acoustic field (amplitude, frequency and phase) over a wide dynamic range at every point simultaneously. A number of signal processing techniques have been developed to process a large array of acoustic signals to quantify the coherent temporal and spatial characteristics of the acoustic waves. Predominantly these systems have been developed for the oil and gas industry to assist reservoir engineers in optimising the well lifetime. Nowadays these systems find a wide variety of applications as integrity monitoring tools in process vessels, storage tanks and piping systems offering the operator tools to schedule maintenance programs and maximize service life.

Temperature profile data collected using XBT and BT casts in a world-wide distribution from NOAA Ship RESEARCHER and other platforms from 1982-08-18 to 1982-12-21 (NODC Accession 8300007)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT and BT casts from NOAA Ship RESEARCHER and other platforms in a world-wide distribution from 18 August 1982 to 21...

Distribution

Science.gov (United States)

John R. Jones

1985-01-01

Quaking aspen is the most widely distributed native North American tree species (Little 1971, Sargent 1890). It grows in a great diversity of regions, environments, and communities (Harshberger 1911). Only one deciduous tree species in the world, the closely related Eurasian aspen (Populus tremula), has a wider range (Weigle and Frothingham 1911)....

A new method, with application, for analysis of the impacts on flood risk of widely distributed enhanced hillslope storage

Directory of Open Access Journals (Sweden)

P. Metcalfe

2018-04-01

Full Text Available Enhanced hillslope storage is utilised in natural flood management in order to retain overland storm run-off and to reduce connectivity between fast surface flow pathways and the channel. Examples include excavated ponds, deepened or bunded accumulation areas, and gullies and ephemeral channels blocked with wooden barriers or debris dams. The performance of large, distributed networks of such measures is poorly understood. Extensive schemes can potentially retain large quantities of run-off, but there are indications that much of their effectiveness can be attributed to desynchronisation of sub-catchment flood waves. Inappropriately sited measures may therefore increase, rather than mitigate, flood risk. Fully distributed hydrodynamic models have been applied in limited studies but introduce significant computational complexity. The longer run times of such models also restrict their use for uncertainty estimation or evaluation of the many potential configurations and storm sequences that may influence the timings and magnitudes of flood waves.Here a simplified overland flow-routing module and semi-distributed representation of enhanced hillslope storage is developed. It is applied to the headwaters of a large rural catchment in Cumbria, UK, where the use of an extensive network of storage features is proposed as a flood mitigation strategy. The models were run within a Monte Carlo framework against data for a 2-month period of extreme flood events that caused significant damage in areas downstream. Acceptable realisations and likelihood weightings were identified using the GLUE uncertainty estimation framework. Behavioural realisations were rerun against the catchment model modified with the addition of the hillslope storage. Three different drainage rate parameters were applied across the network of hillslope storage. The study demonstrates that schemes comprising widely distributed hillslope storage can be modelled effectively within such a

A new method, with application, for analysis of the impacts on flood risk of widely distributed enhanced hillslope storage

Science.gov (United States)

Metcalfe, Peter; Beven, Keith; Hankin, Barry; Lamb, Rob

2018-04-01

Enhanced hillslope storage is utilised in natural flood management in order to retain overland storm run-off and to reduce connectivity between fast surface flow pathways and the channel. Examples include excavated ponds, deepened or bunded accumulation areas, and gullies and ephemeral channels blocked with wooden barriers or debris dams. The performance of large, distributed networks of such measures is poorly understood. Extensive schemes can potentially retain large quantities of run-off, but there are indications that much of their effectiveness can be attributed to desynchronisation of sub-catchment flood waves. Inappropriately sited measures may therefore increase, rather than mitigate, flood risk. Fully distributed hydrodynamic models have been applied in limited studies but introduce significant computational complexity. The longer run times of such models also restrict their use for uncertainty estimation or evaluation of the many potential configurations and storm sequences that may influence the timings and magnitudes of flood waves. Here a simplified overland flow-routing module and semi-distributed representation of enhanced hillslope storage is developed. It is applied to the headwaters of a large rural catchment in Cumbria, UK, where the use of an extensive network of storage features is proposed as a flood mitigation strategy. The models were run within a Monte Carlo framework against data for a 2-month period of extreme flood events that caused significant damage in areas downstream. Acceptable realisations and likelihood weightings were identified using the GLUE uncertainty estimation framework. Behavioural realisations were rerun against the catchment model modified with the addition of the hillslope storage. Three different drainage rate parameters were applied across the network of hillslope storage. The study demonstrates that schemes comprising widely distributed hillslope storage can be modelled effectively within such a reduced complexity

Collaborative 3D Target Tracking in Distributed Smart Camera Networks for Wide-Area Surveillance

Directory of Open Access Journals (Sweden)

Xenofon Koutsoukos

2013-05-01

Full Text Available With the evolution and fusion of wireless sensor network and embedded camera technologies, distributed smart camera networks have emerged as a new class of systems for wide-area surveillance applications. Wireless networks, however, introduce a number of constraints to the system that need to be considered, notably the communication bandwidth constraints. Existing approaches for target tracking using a camera network typically utilize target handover mechanisms between cameras, or combine results from 2D trackers in each camera into 3D target estimation. Such approaches suffer from scale selection, target rotation, and occlusion, drawbacks typically associated with 2D tracking. In this paper, we present an approach for tracking multiple targets directly in 3D space using a network of smart cameras. The approach employs multi-view histograms to characterize targets in 3D space using color and texture as the visual features. The visual features from each camera along with the target models are used in a probabilistic tracker to estimate the target state. We introduce four variations of our base tracker that incur different computational and communication costs on each node and result in different tracking accuracy. We demonstrate the effectiveness of our proposed trackers by comparing their performance to a 3D tracker that fuses the results of independent 2D trackers. We also present performance analysis of the base tracker along Quality-of-Service (QoS and Quality-of-Information (QoI metrics, and study QoS vs. QoI trade-offs between the proposed tracker variations. Finally, we demonstrate our tracker in a real-life scenario using a camera network deployed in a building.

De novo assembly of the perennial ryegrass transcriptome using an RNA-seq strategy

DEFF Research Database (Denmark)

Farrell, Jacqueline Danielle; Byrne, Stephen; Paina, Cristiana

2014-01-01

a homozygous perennial ryegrass genotype can circumvent the challenge of heterozygosity. The goals of this study were to perform RNA-sequencing on multiple tissues from a highly inbred genotype to develop a reference transcriptome. This was complemented with RNA-sequencing of a highly heterozygous genotype...... for SNP calling. Result De novo transcriptome assembly of the inbred genotype created 185,833 transcripts with an average length of 830 base pairs. Within the inbred reference transcriptome 78,560 predicted open reading frames were found of which 24,434 were predicted as complete. Functional annotation...... multiple orthologs. Using the longest unique open reading frames as the reference sequence, 64,242 single nucleotide polymorphisms were found. One thousand sixty one open reading frames from the inbred genotype contained heterozygous sites, confirming the high degree of homozygosity. Conclusion Our study...

Improved fructan accumulation in perennial ryegrass transformed with the onion fructosyltransferase genes 1-SST and 6G-FFT

DEFF Research Database (Denmark)

Gadegaard, Gitte; Didion, Thomas; Foiling, Marianne

2008-01-01

Carbohydrate limitation has been identified as a main cause of inefficient nitrogen use in ruminant animals, which feed mainly on fresh forage, hay and silage. This inefficiency results in suboptimal meat and milk productivity. One important molecular breeding strategy is to improve the nutritional...... value of ryegrass (Lolium perenne) by increasing the fructan content through expression of heterologous fructan biosynthetic genes. We developed perennial ryegrass Lines expressing sucrose:sucrose 1-fructosyltransferase and fructan:fructan 6G-fructosyltransferase genes from onion (Allium cepa) which...... exhibited up to a 3-fold increased fructan content. Further, the high fructan content was stable during the growth period, whereas the fructan content in an elite variety, marketed as a high sugar variety, dropped rapidly after reaching its maximum and subsequently remained low. (c) 2007 Elsevier GmbH. ALL...

Phenotypic Plasticity in Reproductive Traits of the Perennial Shrub Ulex europaeus in Response to Shading: A Multi-Year Monitoring of Cultivated Clones.

Directory of Open Access Journals (Sweden)

Anne Atlan

Full Text Available Phenotypic plasticity may be advantageous for plants to be able to rapidly cope with new and changing environments associated with climate change or during biological invasions. This is especially true for perennial plants, as they may need a longer period to respond genetically to selective pressures than annuals, and also because they are more likely to experience environmental changes during their lifespan. However, few studies have explored the plasticity of the reproductive life history traits of woody perennial species. This study focuses on a woody shrub, Ulex europaeus (common gorse, and on the response of its reproductive traits to one important environmental factor, shading. The study was performed on clones originating from western France (within the native range of this invasive species and grown for seven years. We compared traits of plants grown in a shade treatment (with two successive shade levels vs. full natural light. The traits monitored included flowering onset, pod production and seed predation. All traits studied responded to shading, exhibiting various levels of plasticity. In particular, dense shade induced a radical but reversible decrease in flower and pod production, while moderate shade had little effect on reproductive traits. The magnitude of the response to dense shade depended on the genotype, showing a genetically based polymorphism of plasticity. The level of plasticity also showed substantial variations between years, and the effect of environmental variations was cumulative over time. This suggests that plasticity can influence the lifetime fitness of U. Europaeus and is involved in the capacity of the species to grow under contrasting environmental conditions.

Phenotypic Plasticity in Reproductive Traits of the Perennial Shrub Ulex europaeus in Response to Shading: A Multi-Year Monitoring of Cultivated Clones.

Science.gov (United States)

Atlan, Anne; Hornoy, Benjamin; Delerue, Florian; Gonzalez, Maya; Pierre, Jean-Sébastien; Tarayre, Michèle

2015-01-01

Phenotypic plasticity may be advantageous for plants to be able to rapidly cope with new and changing environments associated with climate change or during biological invasions. This is especially true for perennial plants, as they may need a longer period to respond genetically to selective pressures than annuals, and also because they are more likely to experience environmental changes during their lifespan. However, few studies have explored the plasticity of the reproductive life history traits of woody perennial species. This study focuses on a woody shrub, Ulex europaeus (common gorse), and on the response of its reproductive traits to one important environmental factor, shading. The study was performed on clones originating from western France (within the native range of this invasive species) and grown for seven years. We compared traits of plants grown in a shade treatment (with two successive shade levels) vs. full natural light. The traits monitored included flowering onset, pod production and seed predation. All traits studied responded to shading, exhibiting various levels of plasticity. In particular, dense shade induced a radical but reversible decrease in flower and pod production, while moderate shade had little effect on reproductive traits. The magnitude of the response to dense shade depended on the genotype, showing a genetically based polymorphism of plasticity. The level of plasticity also showed substantial variations between years, and the effect of environmental variations was cumulative over time. This suggests that plasticity can influence the lifetime fitness of U. Europaeus and is involved in the capacity of the species to grow under contrasting environmental conditions.

Consequences of buffelgrass pasture development for primary productivity, perennial plant richness, and vegetation structure in the drylands of Sonora, Mexico.

Science.gov (United States)

Franklin, Kimberly; Molina-Freaner, Francisco

2010-12-01

In large parts of northern Mexico native plant communities are being converted to non-native buffelgrass (Pennisetum ciliare) pastures, and this conversion could fundamentally alter primary productivity and species richness. In Sonora, Mexico land conversion is occurring at a regional scale along a rainfall-driven gradient of primary productivity, across which native plant communities transition from desert scrub to thorn scrub. We used a paired sampling design to compare a satellite-derived index of primary productivity, richness of perennial plant species, and canopy-height profiles of native plant communities with buffelgrass pastures. We sampled species richness across a gradient of primary productivity in desert scrub and thorn scrub vegetation to examine the influence of site productivity on the outcomes of land conversion. We also examined the influence of pasture age on species richness of perennial plants. Index values of primary productivity were lower in buffelgrass pastures than in native vegetation, which suggests a reduction in primary productivity. Land conversion reduced species richness by approximately 50% at local and regional scales, reduced tree and shrub cover by 78%, and reduced canopy height. Land conversion disproportionately reduced shrub species richness, which reflects the common practice among Sonoran ranchers of conserving certain tree and cactus species. Site productivity did not affect the outcomes of land conversion. The age of a buffelgrass pasture was unrelated to species richness within the pasture, which suggests that passive recovery of species richness to preconversion levels is unlikely. Our findings demonstrate that land conversion can result in large losses of plant species richness at local and regional scales and in substantial changes to primary productivity and vegetation structure, which casts doubt on the feasibility of restoring native plant communities without active intervention on the part of land managers. �

Using the Pareto principle in genome-wide breeding value estimation.

Science.gov (United States)

Yu, Xijiang; Meuwissen, Theo H E

2011-11-01

Genome-wide breeding value (GWEBV) estimation methods can be classified based on the prior distribution assumptions of marker effects. Genome-wide BLUP methods assume a normal prior distribution for all markers with a constant variance, and are computationally fast. In Bayesian methods, more flexible prior distributions of SNP effects are applied that allow for very large SNP effects although most are small or even zero, but these prior distributions are often also computationally demanding as they rely on Monte Carlo Markov chain sampling. In this study, we adopted the Pareto principle to weight available marker loci, i.e., we consider that x% of the loci explain (100 - x)% of the total genetic variance. Assuming this principle, it is also possible to define the variances of the prior distribution of the 'big' and 'small' SNP. The relatively few large SNP explain a large proportion of the genetic variance and the majority of the SNP show small effects and explain a minor proportion of the genetic variance. We name this method MixP, where the prior distribution is a mixture of two normal distributions, i.e. one with a big variance and one with a small variance. Simulation results, using a real Norwegian Red cattle pedigree, show that MixP is at least as accurate as the other methods in all studied cases. This method also reduces the hyper-parameters of the prior distribution from 2 (proportion and variance of SNP with big effects) to 1 (proportion of SNP with big effects), assuming the overall genetic variance is known. The mixture of normal distribution prior made it possible to solve the equations iteratively, which greatly reduced computation loads by two orders of magnitude. In the era of marker density reaching million(s) and whole-genome sequence data, MixP provides a computationally feasible Bayesian method of analysis.

Differential Essential Oil Composition and Morphology between Perennial Satureja species Growing in Spain

Directory of Open Access Journals (Sweden)

David García-Rellán

2015-06-01

Full Text Available Chemical composition of the essential oils obtained by hydrodistillation from the aerial parts of thirty six samples of perennial Spanish savouries (Satureja montana L., Satureja innota (Pau G. López, Satureja cuneifolia Ten. and Satureja intricata Lange, was investigated by GC and GC-MS. A total of 72 compounds accounting between 98.25-99.55% of the total oil were identified. High content of carvacrol (59.72±1.50% followed by g -terpinene (17.40±1.11% were found in S.montana essential oils. S. cuneifolia yielded an oil rich in camphor (45.04±1.67% and camphene (12.42±1.71% whereas S. innota produces an essential oil with linalool (23.94±7.58% or geraniol (8.62±3.45% according to the locality of collection and S. intricata showed chemical polymorphism with camphor (16.02±1.75%, as the main compound followed with populations with myrcene (8.46±1.46% and populations with g -terpinene (8.22±1.33%. Although the morphological affinity between S. innota, S.cuneifolia and S. intricata could lead to consider the subspecies level, the phytochemical discriminant analysis support the taxonomic classification of Flora Iberica which ranks these taxa into species.

Carbon: The Ultimate Electrode Choice for Widely Distributed Polymer Solar Cells

DEFF Research Database (Denmark)

Benatto, Gisele Alves dos Reis; Roth, Bérenger; Madsen, Morten Vesterager

2014-01-01

-, indium tin oxide (ITO)-, and silver-free solar cells in a fully packaged form using only roll-to-roll processing is reported. Replacing silver with carbon as electrode material signifi cantly lowers the manufacturing cost and makes the organic photovoltaic (OPV) modules environmentally safe while...... retaining their fl exibility, active area effi ciency, and stability. The substitution of silver with carbon does not affect the roll-to-roll manufacturing of the modules and allows for the same fast printing and coating. The use of carbon as electrode material is one step closer to the wide release of low...

Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas

Science.gov (United States)

Sun, Yanwei; Wang, Chunming; Wang, Ning; Jiang, Xiyuan; Mao, Huizhu; Zhu, Changxiang; Wen, Fujiang; Wang, Xianghua; Lu, Zhijun; Yue, Genhua; Xu, Zengfu; Ye, Jian

2017-01-01

Seed size is a major determinant of seed yield but few is known about the genetics controlling of seed size in plants. Phytohormones cytokinin and brassinosteroid were known to be involved in the regulation of herbaceous plant seed development. Here we identified a homolog of Auxin Response Factor 19 (JcARF19) from a woody plant Jatropha curcas and genetically demonstrated its functions in controlling seed size and seed yield. Through Virus Induced Gene Silencing (VIGS), we found that JcARF19 was a positive upstream modulator in auxin signaling and may control plant organ size in J. curcas. Importantly, transgenic overexpression of JcARF19 significantly increased seed size and seed yield in plants Arabidopsis thaliana and J. curcas, indicating the importance of auxin pathway in seed yield controlling in dicot plants. Transcripts analysis indicated that ectopic expression of JcARF19 in J. curcas upregulated auxin responsive genes encoding essential regulators in cell differentiation and cytoskeletal dynamics of seed development. Our data suggested the potential of improving seed traits by precisely engineering auxin signaling in woody perennial plants. PMID:28102350

Potential ecological roles of flavonoids from Stellera chamaejasme.

Science.gov (United States)

Yan, Zhiqiang; Zeng, Liming; Jin, Hui; Qin, Bo

2015-01-01

Stellera chamaejasme L. (Thymelaeaceae), a perennial weed, distributes widely in the grasslands of Russia, Mongolia and China. The plant synthesizes various secondary metabolites including a group of flavonoids. To our knowledge, flavonoids play important roles in the interactions between plants and the environment. So, what are the benefits to S. chamaejasme from producing these flavonoids? Here, we discuss the potential ecological role of flavonoids from S. chamaejasme in protecting the plant from insects and other herbivores, as well as pathogens and competing plant species, and new data are provided on the phytotoxicity of flavonoids from S. chamaejasme toward Poa annua L.

Temperature profile data collected using BT and XBT casts in a World-wide distribution from NOAA Ship MALCOLM BALDRIGE and other platforms from 1989-03-10 to 1990-08-01 (NODC Accession 9000239)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT and BT casts from NOAA Ship MALCOLM BALDRDIGE and other platforms in a World-wide distribution from 10 March 1989...

Bicarbonate as tracer for plant assimilated C and homogeneity of 14C and 15N distribution in ryegrass and white clover tissue by alternative labeling approaches

DEFF Research Database (Denmark)

Rasmussen, Jim; Kusliene, Gedrime; Jacobsen, Ole Stig

2013-01-01

that 15N also had a heterogeneous distribution (up to two orders of magnitude). Conclusion Bicarbonate can efficiently be used to introduce 14C or 13C into plant via the leaf-labeling method. Both 14C and 15N showed heterogeneous distribution in the plant, although the distribution of 15N was more even......Aims: Application of carbon (C) and nitrogen (N) isotopes is an essential tool to study C and N flows in plant-soil-microorganisms systems. When targeting single plants in a community the tracers need to be added via e.g., leaf-labeling or stem-feeding approaches. In this study we: (i) investigated...... if bicarbonate can be used to introduce 14C (or 13C) into white clover and ryegrass, and (ii) compared the patterns of 14C and 15N allocation in white clover and ryegrass to evaluate the homogeneity of tracer distribution after two alternative labeling approaches. Methods Perennial ryegrass and white clover were...

Temperature profile data collected using BT and XBT casts in a World-wide distribution from NOAA Ship MALCOLM BALDRIGE and other platforms from 1988-02-03 to 1990-03-31 (NODC Accession 9000094)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile data were collected using XBT and BT casts from NOAA Ship MALCOLM BALDRIGE in a World-wide distribution from 03 February 1988 to 31 March 1990....

Distributed Leadership: Friend or Foe?

Science.gov (United States)

Harris, Alma

2013-01-01

Distributed leadership is now widely known and variously enacted in schools and school systems. Distributed leadership implies a fundamental re-conceptualisation of leadership as practice and challenges conventional wisdom about the relationship between formal leadership and organisational performance. There has been much debate, speculation and…

Tourism distribution channels

OpenAIRE

Camilleri, Mark Anthony

2017-01-01

The distribution channels link the customers with the businesses. For many years, the tourism businesses may have distributed their products and services through intermediaries. However, the latest advances in technology have brought significant changes in this regard. More individuals and corporate customers are increasingly benefiting of ubiquitous technologies, including digital media. The development of mobile devices and their applications, are offering a wide range of possibilities to t...

Genome-Wide Identification, Phylogeny, and Expression Analysis of ARF Genes Involved in Vegetative Organs Development in Switchgrass

Directory of Open Access Journals (Sweden)

Jianli Wang

2018-01-01

Full Text Available Auxin response factors (ARFs have been reported to play vital roles during plant growth and development. In order to reveal specific functions related to vegetative organs in grasses, an in-depth study of the ARF gene family was carried out in switchgrass (Panicum virgatum L., a warm-season C4 perennial grass that is mostly used as bioenergy and animal feedstock. A total of 47 putative ARF genes (PvARFs were identified in the switchgrass genome (2n = 4x = 36, 42 of which were anchored to the seven pairs of chromosomes and found to be unevenly distributed. Sixteen PvARFs were predicted to be potential targets of small RNAs (microRNA160 and 167. Phylogenetically speaking, PvARFs were divided into seven distinct subgroups based on the phylogeny, exon/intron arrangement, and conserved motif distribution. Moreover, 15 pairs of PvARFs have different temporal-spatial expression profiles in vegetative organs (2nd, 3rd, and 4th internode and leaves, which implies that different PvARFs have specific functions in switchgrass growth and development. In addition, at least 14 pairs of PvARFs respond to naphthylacetic acid (NAA treatment, which might be helpful for us to study on auxin response in switchgrass. The comprehensive analysis, described here, will facilitate the future functional analysis of ARF genes in grasses.

Distributed power-line outage detection based on wide area measurement system.

Science.gov (United States)

Zhao, Liang; Song, Wen-Zhan

2014-07-21

In modern power grids, the fast and reliable detection of power-line outages is an important functionality, which prevents cascading failures and facilitates an accurate state estimation to monitor the real-time conditions of the grids. However, most of the existing approaches for outage detection suffer from two drawbacks, namely: (i) high computational complexity; and (ii) relying on a centralized means of implementation. The high computational complexity limits the practical usage of outage detection only for the case of single-line or double-line outages. Meanwhile, the centralized means of implementation raises security and privacy issues. Considering these drawbacks, the present paper proposes a distributed framework, which carries out in-network information processing and only shares estimates on boundaries with the neighboring control areas. This novel framework relies on a convex-relaxed formulation of the line outage detection problem and leverages the alternating direction method of multipliers (ADMM) for its distributed solution. The proposed framework invokes a low computational complexity, requiring only linear and simple matrix-vector operations. We also extend this framework to incorporate the sparse property of the measurement matrix and employ the LSQRalgorithm to enable a warm start, which further accelerates the algorithm. Analysis and simulation tests validate the correctness and effectiveness of the proposed approaches.

Genome-wide analysis of SU(VAR)3-9 distribution in chromosomes of Drosophila melanogaster.

Science.gov (United States)

Maksimov, Daniil A; Laktionov, Petr P; Posukh, Olga V; Belyakin, Stepan N; Koryakov, Dmitry E

2018-03-01

Histone modifications represent one of the key factors contributing to proper genome regulation. One of histone modifications involved in gene silencing is methylation of H3K9 residue. Present in the chromosomes across different eukaryotes, this epigenetic mark is controlled by SU(VAR)3-9 and its orthologs. Despite SU(VAR)3-9 was discovered over two decades ago, little is known about the details of its chromosomal distribution pattern. To fill in this gap, we used DamID-seq approach and obtained high-resolution genome-wide profiles for SU(VAR)3-9 in two somatic (salivary glands and brain ganglia) and two germline (ovarian nurse cells and testes) tissues of Drosophila melanogaster. Analysis of tissue and developmental expression of SU(VAR)3-9-bound genes indicates that in the somatic tissues tested, as well as in the ovarian nurse cells, SU(VAR)3-9 tends to associate with transcriptionally silent genes. In contrast, in the testes, SU(VAR)3-9 shows preferential association with testis-specific genes, and its binding appears dynamic during spermatogenesis. In somatic cells, the mere presence/absence of SU(VAR)3-9 binding correlates with lower/higher expression. No such correlation is found in the male germline. Interestingly, transcription units in piRNA clusters (particularly flanks thereof) are frequently targeted by SU(VAR)3-9, and Su(var)3-9 mutation affects the expression of select piRNA species. Our analyses suggest a context-dependent role of SU(VAR)3-9. In euchromatin, SU(VAR)3-9 may serve to fine-tune the expression of individual genes, whereas in heterochromatin, chromosome 4, and piRNA clusters, it may act more broadly over large chromatin domains.

Evaluation of Chemical and Physical-morphological Factors as Potential Determinants of Biomphalaria pfeifferi (Krauss, 1848 Distribution

Directory of Open Access Journals (Sweden)

Utzinger Jürg

1997-01-01

Full Text Available This study was carried out in five sites along a small perennial river system in south-central Tanzania, which had been identified as the focus for transmission of intestinal schistosomiasis in the area. Malacological surveys preceding the study showed a focal distribution of Biomphalaria pfeifferi, intermediate host snail of Schistosoma mansoni, the snails being present in three sites but absent from the other two sites. The objective of this study was to evaluate to what extent chemical and/or physical-morphological factors determine the distribution of B. pfeifferi between these five sites. It was found that none of the chemical constituents in the waters examined were outside the tolerance range of B. pfeifferi snails. Moreover, the composition of water from B. pfeifferi-free sites was not different from that in those sites where snails occurred. Furthermore, none of the physical-morphological constituents seemed likely to be a determinant for the absence of B. pfeifferi. In view of these findings, and those of previous studies, it is concluded that the focal distribution of B. pfeifferi cannot be associated with a single environmental factor and is rather the result of more complex interactions of habitat factors

Screening for Total Carotenoids and β-Carotene in Some Widely ...

African Journals Online (AJOL)

machinery and protect them against photo-damage. (Alexander, 1999). Carotenoids are notable for their wide distribution, structural diversity, and of various ... Squash (Curcurbita moschata), Spinach (Amaranthus gangeticus), Tomatoe (Lycopersicon esculentum) and. Waterleaf (Talinum triangulare) were purchased from.

Productivity and carbon footprint of perennial grass-forage legume intercropping strategies with high or low nitrogen fertilizer input

DEFF Research Database (Denmark)

Hauggaard-Nielsen, Henrik; Lachouani, Petra; Knudsen, Marie Trydeman

2016-01-01

with either a high or a low rate of mineral nitrogen (N) fertilizer. Life cycle assessment (LCA) was used to evaluate the carbon footprint (global warming potential) of the grassland management including measured nitrous oxide (N2O) emissions after sward incorporation. Without applying any mineral N......A three-season field experiment was established and repeated twice with spring barley used as cover crop for different perennial grass-legume intercrops followed by a full year pasture cropping and winter wheat after sward incorporation. Two fertilization regimes were applied with plots fertilized...... carbon footprint. Thus, a reduction in N fertilizer application rates in the low input systems offsets increased N2O emissions after forage legume treatments compared to grass plots due to the N fertilizer production-related emissions. When including the subsequent wheat yield in the total aboveground...

Ecogeography of teosinte.

Directory of Open Access Journals (Sweden)

José de Jesús Sánchez González

Full Text Available Adaptation of crops to climate change has motivated an increasing interest in the potential value of novel traits from wild species; maize wild relatives, the teosintes, harbor traits that may be useful to maize breeding. To study the ecogeographic distribution of teosinte we constructed a robust database of 2363 teosinte occurrences from published sources for the period 1842-2016. A geographical information system integrating 216 environmental variables was created for Mexico and Central America and was used to characterize the environment of each teosinte occurrence site. The natural geographic distribution of teosinte extends from the Western Sierra Madre of the State of Chihuahua, Mexico to the Pacific coast of Nicaragua and Costa Rica, including practically the entire western part of Mesoamerica. The Mexican annuals Zea mays ssp. parviglumis and Zea mays ssp. mexicana show a wide distribution in Mexico, while Zea diploperennis, Zea luxurians, Zea perennis, Zea mays ssp. huehuetenangensis, Zea vespertilio and Zea nicaraguensis had more restricted and distinct ranges, representing less than 20% of the total occurrences. Only 11.2% of teosinte populations are found in Protected Natural Areas in Mexico and Central America. Ecogeographical analysis showed that teosinte can cope with extreme levels of precipitation and temperatures during growing season. Modelling teosinte geographic distribution demonstrated congruence between actual and potential distributions; however, some areas with no occurrences appear to be within the range of adaptation of teosintes. Field surveys should be prioritized to such regions to accelerate the discovery of unknown populations. Potential areas for teosintes Zea mays ssp. mexicana races Chalco, Nobogame, and Durango, Zea mays ssp. huehuetenangensis, Zea luxurians, Zea diploperennis and Zea nicaraguensis are geographically separated; however, partial overlapping occurs between Zea mays ssp. parviglumis and Zea

Ecogeography of teosinte

Science.gov (United States)

Sánchez González, José de Jesús; García, Guillermo Medina; Ojeda, Gabriela Ramírez; Larios, Lino De la Cruz; Holland, James Brendan; Medrano, Roberto Miranda; García Romero, Giovanni Emmanuel

2018-01-01

Adaptation of crops to climate change has motivated an increasing interest in the potential value of novel traits from wild species; maize wild relatives, the teosintes, harbor traits that may be useful to maize breeding. To study the ecogeographic distribution of teosinte we constructed a robust database of 2363 teosinte occurrences from published sources for the period 1842–2016. A geographical information system integrating 216 environmental variables was created for Mexico and Central America and was used to characterize the environment of each teosinte occurrence site. The natural geographic distribution of teosinte extends from the Western Sierra Madre of the State of Chihuahua, Mexico to the Pacific coast of Nicaragua and Costa Rica, including practically the entire western part of Mesoamerica. The Mexican annuals Zea mays ssp. parviglumis and Zea mays ssp. mexicana show a wide distribution in Mexico, while Zea diploperennis, Zea luxurians, Zea perennis, Zea mays ssp. huehuetenangensis, Zea vespertilio and Zea nicaraguensis had more restricted and distinct ranges, representing less than 20% of the total occurrences. Only 11.2% of teosinte populations are found in Protected Natural Areas in Mexico and Central America. Ecogeographical analysis showed that teosinte can cope with extreme levels of precipitation and temperatures during growing season. Modelling teosinte geographic distribution demonstrated congruence between actual and potential distributions; however, some areas with no occurrences appear to be within the range of adaptation of teosintes. Field surveys should be prioritized to such regions to accelerate the discovery of unknown populations. Potential areas for teosintes Zea mays ssp. mexicana races Chalco, Nobogame, and Durango, Zea mays ssp. huehuetenangensis, Zea luxurians, Zea diploperennis and Zea nicaraguensis are geographically separated; however, partial overlapping occurs between Zea mays ssp. parviglumis and Zea perennis, between Zea

Effects on Environmental and Socioeconomic Sustainability of Producing Ethanol from Perennial Grasses

Science.gov (United States)

Dale, V. H.; Parish, E. S.

2016-12-01

Using perennial grasses to produce ethanol can enhance progress toward sustainability. A suite of 35 environmental and socioeconomic sustainability indicators was considered in a holistic sustainability assessment of a five-year switchgrass-to-ethanol production experiment centered on a demonstration-scale biorefinery in Vonore, Tennessee. By combining field measurements, literature review and expert opinion, the team was able to rate 28 of the 35 recommended sustainability indicators. The team combined these ratings within a multi-attribute decision support system tool and used this information to compare the sustainability of producing 2118 hectares of no-till switchgrass relative to two alternative business-as-usual scenarios of unmanaged pasture and tilled corn production. The results suggest that East Tennessee switchgrass production improves environmental quality overall and can be beneficial to the counties surrounding the biorefinery in terms of dollars earned and jobs created. The timing of switchgrass production also provides an opportunity to use inactive equipment and laborers. By incorporating a landscape design approach, the opportunities, constraints and most reasonable paths forward for growing bioenergy feedstock in specific context can be assessed in a way that adapts and improves local practices. Lessons learned from this case study are being incorporated into sustainability assessments of corn stover in Iowa and a variety of bioenergy feedstocks in diverse settings. The overall goal is to develop sound management practices that can address the multiple and sometimes competing demands of stakeholders.

Fitting statistical distributions the generalized lambda distribution and generalized bootstrap methods

CERN Document Server

Karian, Zaven A

2000-01-01

Throughout the physical and social sciences, researchers face the challenge of fitting statistical distributions to their data. Although the study of statistical modelling has made great strides in recent years, the number and variety of distributions to choose from-all with their own formulas, tables, diagrams, and general properties-continue to create problems. For a specific application, which of the dozens of distributions should one use? What if none of them fit well?Fitting Statistical Distributions helps answer those questions. Focusing on techniques used successfully across many fields, the authors present all of the relevant results related to the Generalized Lambda Distribution (GLD), the Generalized Bootstrap (GB), and Monte Carlo simulation (MC). They provide the tables, algorithms, and computer programs needed for fitting continuous probability distributions to data in a wide variety of circumstances-covering bivariate as well as univariate distributions, and including situations where moments do...

Transformation of an empirical distribution to normal distribution by the use of Johnson system of translation and symmetrical quantile method

OpenAIRE

Ludvík Friebel; Jana Friebelová

2006-01-01

This article deals with approximation of empirical distribution to standard normal distribution using Johnson transformation. This transformation enables us to approximate wide spectrum of continuous distributions with a normal distribution. The estimation of parameters of transformation formulas is based on percentiles of empirical distribution. There are derived theoretical probability distribution functions of random variable obtained on the base of backward transformation standard normal ...

Temperature, salinity, and nutrients data from CTD and bottle casts from a world-wide distribution from the CORNIDE DE SAAVEDRA and other platforms from 01 January 1914 to 12 December 1999 (NODC Accession 0000207)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — CTD, bottle, and other data were collected from the CORNIDE DE SAAVEDRA and other platforms from a world-wide distribution from 01 January 1914 to 31 December 1999....

Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology.

Science.gov (United States)

Zeng, Bing; Yan, Haidong; Liu, Xinchun; Zang, Wenjing; Zhang, Ailing; Zhou, Sifan; Huang, Linkai; Liu, Jinping

2017-01-01

While orchardgrass ( Dactylis glomerata L.) is a well-known perennial forage species, rust diseases cause serious reductions in the yield and quality of orchardgrass; however, genetic mechanisms of rust resistance are not well understood in orchardgrass. In this study, a genome-wide association study (GWAS) was performed using specific-locus amplified fragment sequencing (SLAF-seq) technology in orchardgrass. A total of 2,334,889 SLAF tags were generated to produce 2,309,777 SNPs. ADMIXTURE analysis revealed unstructured subpopulations for 33 accessions, indicating that this orchardgrass population could be used for association analysis. Linkage disequilibrium (LD) analysis revealed an average r 2 of 0.4 across all SNP pairs, indicating a high extent of LD in these samples. Through GWAS, a total of 4,604 SNPs were found to be significantly ( P  rust trait. The bulk analysis discovered a number of 5,211 SNPs related to rust trait. Two candidate genes, including cytochrome P450, and prolamin were implicated in disease resistance through prediction of functional genes surrounding each high-quality SNP ( P  rust traits based on GWAS analysis and bulk analysis. The large number of SNPs associated with rust traits and these two candidate genes may provide the basis for further research on rust resistance mechanisms and marker-assisted selection (MAS) for rust-resistant lineages.

Multi-farm economic analysis of perennial energy crops in Central Greece, taking into account the CAP reform

International Nuclear Information System (INIS)

Lychnaras, Vassilis; Schneider, Uwe A.

2011-01-01

This study analyses farm level economic impacts of biomass production from perennial crops including Arundo donax L. (arundo), Miscanthus x giganteus (miscanthus), Panicum virgatum L. (switchgrass) and Cynara cardunculus L. (cardoon). Regional biomass supply curves are estimated with a dynamic, multi-farm, mathematical programming model. Micro-economic data for the model are generated from farm surveys covering 52 farms containing a total of 400 parcels, in Central Greece. The study also examines the potential effects of the Common Agricultural Policy reform in 2003 on regional biomass supply. Simulations show that the policy reform toward decoupled subsidies lowers the cost of biomass between 15 and 25 euro per tonne. Switchgrass appears to be the most attractive option, followed by cardoon and miscanthus. Due to high specific machinery cost, arundo is never preferred. Relative to the agricultural policy setting of Agenda 2000, the biomass potential increases more for farms of small economic size and farms with a higher share of cotton. (author)

Multi-farm economic analysis of perennial energy crops in Central Greece, taking into account the CAP reform

Energy Technology Data Exchange (ETDEWEB)

Lychnaras, Vassilis [Centre for Planning and Economic Research, 11, Amerikis str., 106 72 Athens (Greece); Schneider, Uwe A. [Research Unit Sustainability and Global Change, University of Hamburg, KlimaCampus Hamburg, Bundesstrasse 55, D-20146 Hamburg (Germany)

2011-01-15

This study analyses farm level economic impacts of biomass production from perennial crops including Arundo donax L. (arundo), Miscanthus x giganteus (miscanthus), Panicum virgatum L. (switchgrass) and Cynara cardunculus L. (cardoon). Regional biomass supply curves are estimated with a dynamic, multi-farm, mathematical programming model. Micro-economic data for the model are generated from farm surveys covering 52 farms containing a total of 400 parcels, in Central Greece. The study also examines the potential effects of the Common Agricultural Policy reform in 2003 on regional biomass supply. Simulations show that the policy reform toward decoupled subsidies lowers the cost of biomass between 15 and 25 euro per tonne. Switchgrass appears to be the most attractive option, followed by cardoon and miscanthus. Due to high specific machinery cost, arundo is never preferred. Relative to the agricultural policy setting of Agenda 2000, the biomass potential increases more for farms of small economic size and farms with a higher share of cotton. (author)

The Perennial Environment Observatory by A.N.D.R.A. (the French National Radioactive Waste Management Agency)

International Nuclear Information System (INIS)

Leclerc, E.

2010-01-01

The Perennial Environment Observatory [Observatoire Perenne de l'Environnement - OPE] is a unique approach and infrastructure developed and implemented by ANDRA, the French National Radioactive Waste Management Agency, as part of its overall project of deep geological disposal for radioactive waste. Its current mission is to assess the initial state of the rural (forest, pasture, open-field and aquatic) environment, prior to repository construction. This will be followed in 2017 (pending construction authorizations) and for a period exceeding a century, by monitoring of any impact the repository may have on the environment. In addition to serving its own industrial purpose of environmental monitoring, ANDRA also opens the OPE approach, infrastructure and acquired knowledge (database...) to the scientific community to support further research on long term evolution of the environment subjected to natural and anthropogenic stresses, and to contribute to a better understanding of the interaction between the various compartments of the environment. (author)

Coal distribution, January--June 1990

Energy Technology Data Exchange (ETDEWEB)

1990-10-17

The Coal Distribution report provides information on coal production, distribution, and stocks in the United States to a wide audience including Congress, federal and state agencies, the coal industry, and the general public. This issue presents information for January through June 1990. Coal distribution data are shown (in tables 1--34) by coal-producing state of origin, consumer use, method of transportation, and state of destination. 6 figs., 34 tabs.

Distributed Energy Generation for Climate Resilience

Energy Technology Data Exchange (ETDEWEB)

Stout, Sherry; Hotchkiss, Eliza

2017-05-24

Distributed generation can play a critical role in supporting climate adaptation goals. This infographic style poster will showcase the role of distributed generation in achieving a wide range of technical and policy goals and social services associated with climate adaptation.

Phenotypic plasticity despite source-sink population dynamics in a long-lived perennial plant.

Science.gov (United States)

Anderson, Jill T; Sparks, Jed P; Geber, Monica A

2010-11-01

• Species that exhibit adaptive plasticity alter their phenotypes in response to environmental conditions, thereby maximizing fitness in heterogeneous landscapes. However, under demographic source-sink dynamics, selection should favor traits that enhance fitness in the source habitat at the expense of fitness in the marginal habitat. Consistent with source-sink dynamics, the perennial blueberry, Vaccinium elliottii (Ericaceae), shows substantially higher fitness and population sizes in dry upland forests than in flood-prone bottomland forests, and asymmetrical gene flow occurs from upland populations into bottomland populations. Here, we examined whether this species expresses plasticity to these distinct environments despite source-sink dynamics. • We assessed phenotypic responses to a complex environmental gradient in the field and to water stress in the glasshouse. • Contrary to expectations, V. elliottii exhibited a high degree of plasticity in foliar and root traits (specific leaf area, carbon isotope ratios, foliar nitrogen content, root : shoot ratio, root porosity and root architecture). • We propose that plasticity can be maintained in source-sink systems if it is favored within the source habitat and/or a phylogenetic artifact that is not costly. Additionally, plasticity could be advantageous if habitat-based differences in fitness result from incipient niche expansion. Our results illuminate the importance of evaluating phenotypic traits and fitness components across heterogeneous landscapes. © The Authors (2010). Journal compilation © New Phytologist Trust (2010).

Precipitation and runoff simulations of select perennial and ephemeral watersheds in the middle Carson River basin, Eagle, Dayton, and Churchill Valleys, west-central Nevada

Science.gov (United States)

Jeton, Anne E.; Maurer, Douglas K.

2011-01-01

The effect that land use may have on streamflow in the Carson River, and ultimately its impact on downstream users can be evaluated by simulating precipitation-runoff processes and estimating groundwater inflow in the middle Carson River in west-central Nevada. To address these concerns, the U.S. Geological Survey, in cooperation with the Bureau of Reclamation, began a study in 2008 to evaluate groundwater flow in the Carson River basin extending from Eagle Valley to Churchill Valley, called the middle Carson River basin in this report. This report documents the development and calibration of 12 watershed models and presents model results and the estimated mean annual water budgets for the modeled watersheds. This part of the larger middle Carson River study will provide estimates of runoff tributary to the Carson River and the potential for groundwater inflow (defined here as that component of recharge derived from percolation of excess water from the soil zone to the groundwater reservoir). The model used for the study was the U.S. Geological Survey's Precipitation-Runoff Modeling System, a physically based, distributed-parameter model designed to simulate precipitation and snowmelt runoff as well as snowpack accumulation and snowmelt processes. Models were developed for 2 perennial watersheds in Eagle Valley having gaged daily mean runoff, Ash Canyon Creek and Clear Creek, and for 10 ephemeral watersheds in the Dayton Valley and Churchill Valley hydrologic areas. Model calibration was constrained by daily mean runoff for the 2 perennial watersheds and for the 10 ephemeral watersheds by limited indirect runoff estimates and by mean annual runoff estimates derived from empirical methods. The models were further constrained by limited climate data adjusted for altitude differences using annual precipitation volumes estimated in a previous study. The calibration periods were water years 1980-2007 for Ash Canyon Creek, and water years 1991-2007 for Clear Creek. To

GWAMA: software for genome-wide association meta-analysis

Directory of Open Access Journals (Sweden)

Mägi Reedik

2010-05-01

Full Text Available Abstract Background Despite the recent success of genome-wide association studies in identifying novel loci contributing effects to complex human traits, such as type 2 diabetes and obesity, much of the genetic component of variation in these phenotypes remains unexplained. One way to improving power to detect further novel loci is through meta-analysis of studies from the same population, increasing the sample size over any individual study. Although statistical software analysis packages incorporate routines for meta-analysis, they are ill equipped to meet the challenges of the scale and complexity of data generated in genome-wide association studies. Results We have developed flexible, open-source software for the meta-analysis of genome-wide association studies. The software incorporates a variety of error trapping facilities, and provides a range of meta-analysis summary statistics. The software is distributed with scripts that allow simple formatting of files containing the results of each association study and generate graphical summaries of genome-wide meta-analysis results. Conclusions The GWAMA (Genome-Wide Association Meta-Analysis software has been developed to perform meta-analysis of summary statistics generated from genome-wide association studies of dichotomous phenotypes or quantitative traits. Software with source files, documentation and example data files are freely available online at http://www.well.ox.ac.uk/GWAMA.

Escherichia coli type III secretion system 2 (ETT2) is widely distributed in avian pathogenic Escherichia coli isolates from Eastern China.

Science.gov (United States)

Wang, S; Liu, X; Xu, X; Zhao, Y; Yang, D; Han, X; Tian, M; Ding, C; Peng, D; Yu, S

2016-10-01

Pathogens utilize type III secretion systems to deliver effector proteins, which facilitate bacterial infections. The Escherichia coli type III secretion system 2 (ETT2) which plays a crucial role in bacterial virulence, is present in the majority of E. coli strains, although ETT2 has undergone widespread mutational attrition. We investigated the distribution and characteristics of ETT2 in avian pathogenic E. coli (APEC) isolates and identified five different ETT2 isoforms, including intact ETT2, in 57·6% (141/245) of the isolates. The ETT2 locus was present in the predominant APEC serotypes O78, O2 and O1. All of the ETT2 loci in the serotype O78 isolates were degenerate, whereas an intact ETT2 locus was mostly present in O1 and O2 serotype strains, which belong to phylogenetic groups B2 and D, respectively. Interestingly, a putative second type III secretion-associated locus (eip locus) was present only in the isolates with an intact ETT2. Moreover, ETT2 was more widely distributed in APEC isolates and exhibited more isoforms compared to ETT2 in human extraintestinal pathogenic E. coli, suggesting that APEC might be a potential risk to human health. However, there was no distinct correlation between ETT2 and other virulence factors in APEC.

Is the wide distribution of aspen a result of its stress tolerance?

Science.gov (United States)

V. J. Lieffers; S. M. Landhausser; E. H. Hogg

2001-01-01

Populus tremuloides is distributed from drought-prone fringes of the Great Plains to extremely cold sites at arctic treeline. To occupy these conditions aspen appears to be more tolerant of stress than the other North American species of the genus Populus. Cold winters, cold soil conditions during the growing season, periodic drought, insect defoliation, and...

Distributed Analysis in CMS

CERN Document Server

Fanfani, Alessandra; Sanches, Jose Afonso; Andreeva, Julia; Bagliesi, Giusepppe; Bauerdick, Lothar; Belforte, Stefano; Bittencourt Sampaio, Patricia; Bloom, Ken; Blumenfeld, Barry; Bonacorsi, Daniele; Brew, Chris; Calloni, Marco; Cesini, Daniele; Cinquilli, Mattia; Codispoti, Giuseppe; D'Hondt, Jorgen; Dong, Liang; Dongiovanni, Danilo; Donvito, Giacinto; Dykstra, David; Edelmann, Erik; Egeland, Ricky; Elmer, Peter; Eulisse, Giulio; Evans, Dave; Fanzago, Federica; Farina, Fabio; Feichtinger, Derek; Fisk, Ian; Flix, Josep; Grandi, Claudio; Guo, Yuyi; Happonen, Kalle; Hernandez, Jose M; Huang, Chih-Hao; Kang, Kejing; Karavakis, Edward; Kasemann, Matthias; Kavka, Carlos; Khan, Akram; Kim, Bockjoo; Klem, Jukka; Koivumaki, Jesper; Kress, Thomas; Kreuzer, Peter; Kurca, Tibor; Kuznetsov, Valentin; Lacaprara, Stefano; Lassila-Perini, Kati; Letts, James; Linden, Tomas; Lueking, Lee; Maes, Joris; Magini, Nicolo; Maier, Gerhild; McBride, Patricia; Metson, Simon; Miccio, Vincenzo; Padhi, Sanjay; Pi, Haifeng; Riahi, Hassen; Riley, Daniel; Rossman, Paul; Saiz, Pablo; Sartirana, Andrea; Sciaba, Andrea; Sekhri, Vijay; Spiga, Daniele; Tuura, Lassi; Vaandering, Eric; Vanelderen, Lukas; Van Mulders, Petra; Vedaee, Aresh; Villella, Ilaria; Wicklund, Eric; Wildish, Tony; Wissing, Christoph; Wurthwein, Frank

2009-01-01

The CMS experiment expects to manage several Pbytes of data each year during the LHC programme, distributing them over many computing sites around the world and enabling data access at those centers for analysis. CMS has identified the distributed sites as the primary location for physics analysis to support a wide community with thousands potential users. This represents an unprecedented experimental challenge in terms of the scale of distributed computing resources and number of user. An overview of the computing architecture, the software tools and the distributed infrastructure is reported. Summaries of the experience in establishing efficient and scalable operations to get prepared for CMS distributed analysis are presented, followed by the user experience in their current analysis activities.

Effect of Inhalation of Aromatherapy Oil on Patients with Perennial Allergic Rhinitis: A Randomized Controlled Trial

Science.gov (United States)

Choi, Seo Yeon

2016-01-01

This study aimed to investigate the effects of aromatherapy oil inhalation on symptoms, quality of life, sleep quality, and fatigue level among adults with perennial allergic rhinitis (PAR). Fifty-four men and women aged between 20 and 60 were randomized to inhale aromatherapy oil containing essential oil from sandalwood, geranium, and Ravensara or almond oil (the placebo) for 5 minutes twice daily for 7 days. PAR symptoms determined by Total Nasal Symptom Score (TNSS), the Rhinoconjunctivitis Quality of Life Questionnaire (RQLQ), sleep quality by Verran Synder-Halpern (VSH) scale, and fatigue level by Chalder Fatigue Scale (CFS) were assessed before and after intervention period. Compared with the placebo, the experimental group showed significant improvement in TNSS, especially in nasal obstruction. The aromatherapy group also showed significantly higher improvements in total score of RQLQ and CFS. These findings indicate that inhalation of certain aromatherapy oil helps relieve PAR symptoms, improve rhinitis-specific quality of life, and reduce fatigue in patients with PAR. In conclusion, inhalation of aromatherapy essential oil may have potential as an effective intervention to alleviate PAR. PMID:27034695

Effect of Inhalation of Aromatherapy Oil on Patients with Perennial Allergic Rhinitis: A Randomized Controlled Trial

Directory of Open Access Journals (Sweden)

Seo Yeon Choi

2016-01-01

Full Text Available This study aimed to investigate the effects of aromatherapy oil inhalation on symptoms, quality of life, sleep quality, and fatigue level among adults with perennial allergic rhinitis (PAR. Fifty-four men and women aged between 20 and 60 were randomized to inhale aromatherapy oil containing essential oil from sandalwood, geranium, and Ravensara or almond oil (the placebo for 5 minutes twice daily for 7 days. PAR symptoms determined by Total Nasal Symptom Score (TNSS, the Rhinoconjunctivitis Quality of Life Questionnaire (RQLQ, sleep quality by Verran Synder-Halpern (VSH scale, and fatigue level by Chalder Fatigue Scale (CFS were assessed before and after intervention period. Compared with the placebo, the experimental group showed significant improvement in TNSS, especially in nasal obstruction. The aromatherapy group also showed significantly higher improvements in total score of RQLQ and CFS. These findings indicate that inhalation of certain aromatherapy oil helps relieve PAR symptoms, improve rhinitis-specific quality of life, and reduce fatigue in patients with PAR. In conclusion, inhalation of aromatherapy essential oil may have potential as an effective intervention to alleviate PAR.

Water Use and Water-Use Efficiency of Three Perennial Bioenergy Grass Crops in Florida

Directory of Open Access Journals (Sweden)

Jerry M. Bennett

2012-10-01

Full Text Available Over two-thirds of human water withdrawals are estimated to be used for agricultural production, which is expected to increase as demand for renewable liquid fuels from agricultural crops intensifies. Despite the potential implications of bioenergy crop production on water resources, few data are available on water use of perennial bioenergy grass crops. Therefore, the objective of this study was to compare dry matter yield, water use, and water-use efficiency (WUE of elephantgrass, energycane, and giant reed, grown under field conditions for two growing seasons in North Central Florida. Using scaled sap flow sensor data, water use ranged from about 850 to 1150 mm during the growing season, and was generally greater for giant reed and less for elephantgrass. Despite similar or greater water use by giant reed, dry biomass yields of 35 to 40 Mg ha−1 were significantly greater for energycane and elephantgrass, resulting in greater WUE. Overall, water use by the bioenergy crops was greater than the rainfall received during the study, indicating that irrigation will be needed in the region to achieve optimal yields. Species differ in water use and WUE and species selection can play an important role with regard to potential consequences for water resources.

Growing C4 perennial grass for bioenergy using a new Agro-BGC ecosystem model

Science.gov (United States)

di Vittorio, A. V.; Anderson, R. S.; Miller, N. L.; Running, S. W.

2009-12-01

Accurate, spatially gridded estimates of bioenergy crop yields require 1) biophysically accurate crop growth models and 2) careful parameterization of unavailable inputs to these models. To meet the first requirement we have added the capacity to simulate C4 perennial grass as a bioenergy crop to the Biome-BGC ecosystem model. This new model, hereafter referred to as Agro-BGC, includes enzyme driven C4 photosynthesis, individual live and dead leaf, stem, and root carbon/nitrogen pools, separate senescence and litter fall processes, fruit growth, optional annual seeding, flood irrigation, a growing degree day phenology with a killing frost option, and a disturbance handler that effectively simulates fertilization, harvest, fire, and incremental irrigation. There are four Agro-BGC vegetation parameters that are unavailable for Panicum virgatum (switchgrass), and to meet the second requirement we have optimized the model across multiple calibration sites to obtain representative values for these parameters. We have verified simulated switchgrass yields against observations at three non-calibration sites in IL. Agro-BGC simulates switchgrass growth and yield at harvest very well at a single site. Our results suggest that a multi-site optimization scheme would be adequate for producing regional-scale estimates of bioenergy crop yields on high spatial resolution grids.

Multi Agent System Based Wide Area Protection against Cascading Events

DEFF Research Database (Denmark)

Liu, Zhou; Chen, Zhe; Liu, Leo

2012-01-01

In this paper, a multi-agent system based wide area protection scheme is proposed in order to prevent long term voltage instability induced cascading events. The distributed relays and controllers work as a device agent which not only executes the normal function automatically but also can...... the effectiveness of proposed protection strategy. The simulation results indicate that the proposed multi agent control system can effectively coordinate the distributed relays and controllers to prevent the long term voltage instability induced cascading events....

Perennial water stratification and the role of freshwater in the mass balance of Arctic ice shelves and multiyear landfast sea ice

International Nuclear Information System (INIS)

Jeffries, M.O.

1991-01-01

A number of the ice shelves of northern Ellesmere Island in the Canadian High Arctic owe their origin to multiyear landfast sea ice (MLSI) growth during the post-Hypsithermal cooling ca. 3,000-4,000 BP. Since they grew in response to an arctic-wide climatic deterioration and contain evidence of occasional post-4,000 BP climatic ameliorations, they may be expected to be sensitive to future global climate changes manifested in the High Arctic. The purpose of this paper is to examine ice-ocean interactions and feedbacks, and the response of the ice shelves and the MLSI to the improved summer climate of the last ca. 100 years, and implications for the future. There is good evidence that there has been a negative surface mass balance since the turn of the century. Mass balance measurements on the Ward Hunt Ice Shelf between 1966 and 1985 indicate a total ice loss of 1.371 m at a mean annual rate of 68.5 mm. The interannual pattern of accumulation and ablation and the long-term losses on the ice shelf are similar to other Canadian High Arctic glacier mass balance records. It is evident from water and ice core records of salinity, δ 18 0 and tritium, that perennial water stratification is common below and behind the ice shelves and MLSI. The coastal waters are highly stratified, with anything from 0.5 m to 41.0 m of freshwater interposed between the overlying ice and underlying seawater. The primary source of the freshwater is summer run-off of snow-meltwater from the adjacent land and from the ice itself. There is minimal mixing between the influent freshwater and seawater, and the freshwater is either dammed behind the ice shelves and the MLSI, with subsequent under-ice freshwater outflows, or pooled in under-ice depressions

The Perennial Debate: Nature, Nurture, or Choice? Black and White Americans' Explanations for Individual Differences

Science.gov (United States)

Jayaratne, Toby Epstein; Gelman, Susan A.; Feldbaum, Merle; Sheldon, Jane P.; Petty, Elizabeth M.; Kardia, Sharon L.R.

2009-01-01

This paper examines three common explanations for human characteristics: genes, the environment, and choice. Based on data from a representative sample of White and Black Americans, respondents indicated how much they believed each factor influenced individual differences in athleticism, nurturance, drive, math ability, violence, intelligence, and sexual orientation. Results show that across traits: 1) Black respondents generally favor choice and reject genetic explanations, whereas White respondents indicate less causal consistency; 2) although a sizeable subset of respondents endorse just one factor, most report multiple factors as at least partly influential; and 3) among White respondents greater endorsement of genetic explanations is associated with less acceptance of choice and the environment, although among Black respondents a negative relationship holds only between genes and choice. The social relevance of these findings is discussed within the context of the attribution, essentialism and lay theory literature. The results underscore the need to consider more complex and nuanced issues than are implied by the simplistic, unidimensional character of the nature/nurture and determinism/free will debates — perennial controversies that have significance in the current genomic era. PMID:20072661

Modeling the Thickness of Perennial Ice Covers on Stratified Lakes of the Taylor Valley, Antarctica

Science.gov (United States)

Obryk, M. K.; Doran, P. T.; Hicks, J. A.; McKay, C. P.; Priscu, J. C.

2016-01-01

A one-dimensional ice cover model was developed to predict and constrain drivers of long term ice thickness trends in chemically stratified lakes of Taylor Valley, Antarctica. The model is driven by surface radiative heat fluxes and heat fluxes from the underlying water column. The model successfully reproduced 16 years (between 1996 and 2012) of ice thickness changes for west lobe of Lake Bonney (average ice thickness = 3.53 m; RMSE = 0.09 m, n = 118) and Lake Fryxell (average ice thickness = 4.22 m; RMSE = 0.21 m, n = 128). Long-term ice thickness trends require coupling with the thermal structure of the water column. The heat stored within the temperature maximum of lakes exceeding a liquid water column depth of 20 m can either impede or facilitate ice thickness change depending on the predominant climatic trend (temperature cooling or warming). As such, shallow (< 20 m deep water columns) perennially ice-covered lakes without deep temperature maxima are more sensitive indicators of climate change. The long-term ice thickness trends are a result of surface energy flux and heat flux from the deep temperature maximum in the water column, the latter of which results from absorbed solar radiation.

Temperature profile and chemical data collected using XBT and CTD casts from NOAA Ship MALCOLM BALDRIGE and other platforms in a World-wide distribution from 1991-09-17 to 1995-03-23 (NODC Accession 9500074)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile and chemical data were collected using XBT and CTD casts in a World-wide distribution from NOAA Ship MALCOLM BALDRIGE and other platforms from 17...

Lithuanian on-line periodicals on the World Wide Web

Directory of Open Access Journals (Sweden)

Lina Sarlauskiene

2001-01-01

Full Text Available Deals with Lithuanian full-text electronic periodicals distributed through the World Wide Web. An electronic periodical is usually defined as a regular publication on some particular topic distributed in digital form, chiefly through the Web, but also by electronic mail or digital disk. The author has surveyed 106 publications. Thirty-four are distributed only on the Web, and 72 have printed versions. The number of analysed publications is not very big, but four years of electronic publishing and the variety of periodicals enables us to establish the causes of this phenomenon, the main features of development, and some perspectives. Electronic periodicals were analysed according to their type, purpose, contents, publisher, regularity, language, starting date and place of publication, and other features.

Sedimentology of the Essaouira Basin (Meskala Field) in context of regional sediment distribution patterns during upper Triassic pluvial events

Science.gov (United States)

Mader, Nadine K.; Redfern, Jonathan; El Ouataoui, Majid

2017-06-01

Upper Triassic continental clastics (TAGI: Trias Argilo-Greseux Inferieur) in the Essaouira Basin are largely restricted to the subsurface, which has limited analysis of the depositional environments and led to speculation on potential provenance of the fluvial systems. Facies analysis of core from the Meskala Field onshore Essaouira Basin is compared with tentatively time-equivalent deposits exposed in extensive outcrops in the Argana Valley, to propose a process orientated model for local versus regional sediment distribution patterns in the continuously evolving Moroccan Atlantic rift during Carnian to Norian times. The study aims to unravel the climatic overprint and improve the understanding of paleo-climatic variations along the Moroccan Atlantic margin to previously recognised Upper Triassic pluvial events. In the Essaouira Basin, four facies associations representing a progressive evolution from proximal to distal facies belts in a continental rift were established. Early ephemeral braided river systems are succeeded by a wet aeolian sandflat environment with a strong arid climatic overprint (FA1). This is followed by the onset of perennial fluvial deposits with extensive floodplain fines (FA2), accompanied by a distinct shift in fluvial style, suggesting increase in discharge and related humidity, either locally or in the catchment area. The fluvial facies transitions to a shallow lacustrine or playa lake delta environment (FA3), which exhibits cyclical abandonment. The delta is progressively overlain by a terminal playa with extensive, mottled mudstones (FA4), interpreted to present a return from cyclical humid-arid conditions to prevailing aridity in the basin. In terms of regional distribution and sediment source provenance, paleocurrent data from Carnian to Norian deposits (T5 to T8 member) in the Argana Valley suggest paleoflow focused towards the S and SW, not directed towards the Meskala area in the NW as previously suggested. A major depo

Relationship between pure Schistosoma haematobium infection in Upper Egypt and irrigation systems. Part II: Host characteristics. The general prevalence of Schistosoma haematobium, age and sex distribution.

Science.gov (United States)

Hammam, H M; Allam, F A; Hassanein, F

1975-01-01

The epidemiology of bilharziasis was studied in four villages in Assiut Governorate. These villages were almost similar with respect to their socioeconomic conditions, modes of living, availability and date of introduction of medical services. The first village, Gezirat El-Maabda, has a basin system of irrigation. The other three villages had shifted to the perennial system of irrigation for three years in Nazza Karrar, 26 years in El-Ghorayeb and 95 years in Garf Sarhan and were similar with respect to proximity to water courses. So the only variable of importance between the four villages was the mode of irrigation. Bilharziasis was diagnosed by detection of eggs in urine or faeces. A definitive relationship between the prevalence of S. haematobium infection and the type of irrigation system was further documented. A low prevalence was found in Gezirat El-Maabda (2.95%). In the other three villages a much higher prevalence existed (31.9%, 46.2% & 38.9% in Nazza Karar, El-Ghorayeb and Garf Sarhan respectively). The higher prevalence of S. haematobium in Nazza Karar (31.9%) only three years after introduction of perennial irrigation was a disappointing finding. It can be considered as an evidence against the elaborate measures and precautions planned and incompletely implemented before or after the establishment of Aswan High Dam. Not a single case of S. mansoni was encountered during this study. As regards the age and sex distribution of S. haematobium in the three villages irrigated perennially, a steep rise started at the age group 5-9 years reaching a peak at the age group 10-14 years. In Gezirat El-Maabda the peak was reached at later age (15-19 years). The cause of this difference was explained. Males showed a higher rate of infection than females in almost all age groups of the four village studied.

[Origination of Pareto distribution in complex dynamic systems].

Science.gov (United States)

Chernavskiĭ, D S; Nikitin, A P; Chernavskaia, O D

2008-01-01

The Pareto distribution, whose probability density function can be approximated at sufficiently great chi as rho(chi) - chi(-alpha), where alpha > or = 2, is of crucial importance from both the theoretical and practical point of view. The main reason is its qualitative distinction from the normal (Gaussian) distribution. Namely, the probability of high deviations appears to be significantly higher. The conception of the universal applicability of the Gauss law remains to be widely distributed despite the lack of objective confirmation of this notion in a variety of application areas. The origin of the Pareto distribution in dynamic systems located in the gaussian noise field is considered. A simple one-dimensional model is discussed where the system response in a rather wide interval of the variable can be quite precisely approximated by this distribution.

Genome-wide prediction methods in highly diverse and heterozygous species: proof-of-concept through simulation in grapevine.

Directory of Open Access Journals (Sweden)

Agota Fodor

Full Text Available Nowadays, genome-wide association studies (GWAS and genomic selection (GS methods which use genome-wide marker data for phenotype prediction are of much potential interest in plant breeding. However, to our knowledge, no studies have been performed yet on the predictive ability of these methods for structured traits when using training populations with high levels of genetic diversity. Such an example of a highly heterozygous, perennial species is grapevine. The present study compares the accuracy of models based on GWAS or GS alone, or in combination, for predicting simple or complex traits, linked or not with population structure. In order to explore the relevance of these methods in this context, we performed simulations using approx 90,000 SNPs on a population of 3,000 individuals structured into three groups and corresponding to published diversity grapevine data. To estimate the parameters of the prediction models, we defined four training populations of 1,000 individuals, corresponding to these three groups and a core collection. Finally, to estimate the accuracy of the models, we also simulated four breeding populations of 200 individuals. Although prediction accuracy was low when breeding populations were too distant from the training populations, high accuracy levels were obtained using the sole core-collection as training population. The highest prediction accuracy was obtained (up to 0.9 using the combined GWAS-GS model. We thus recommend using the combined prediction model and a core-collection as training population for grapevine breeding or for other important economic crops with the same characteristics.

Polyphyly of the spring-parsleys (Cymopterus): molecular and morphological evidence suggests complex relationships among the perennial endemic genera of western North American Apiaceae

International Nuclear Information System (INIS)

Downie, S.R.; Hartman, R.L.; Sun, F.-J.; Katz-Downie, D.S.

2002-01-01

Cladistic analyses of DNA sequences from the nuclear rDNA internal transcribed spacer region and cpDNA rps16 intron and, for a subset of taxa, the cpDNA trnF-trnL-trnT locus were carried out to evaluate the monophyly of Cymopterus and to ascertain its phylogenetic placement among the other perennial genera of Apiaceae (Umbelliferae) subfamily Apioideae endemic to western North America. To elucidate patterns in the evolution of specific fruit characters and to evaluate their utility in circumscribing genera unambiguously, additional evidence was procured from cross-sections of mature fruits and the results of cladistic analysis of 25 morphological characters. Analyses of the partitioned data sets resulted in weakly supported and largely unresolved phylogenetic hypotheses, possibly due to the rapid radiation of the group, whereas the combined analysis of all molecular evidence resulted in a well-resolved phylogeny with higher bootstrap support. The traditionally used fruit characters of wing shape and composition and orientation of mericarp compression are highly variable. The results of these analyses reveal that Cymopterus and Lomatium, the two largest genera of western North American Apiaceae, are polyphyletic, and that their species are inextricably linked with those of other endemic perennial genera of the region (such as, Aletes, Musineon, Oreoxis, Pseudocymopterus, Pteryxia, and Tauschia), many of which are also not monophyletic. Prior emphasis on characters of the fruit in all systems of classification of the group has led to highly artificial assemblages of species. A complete reassessment of generic limits of all western endemic Apiaceae is required, as is further systematic study of this intractable group. (author)

Occurrence, Distribution, and Risk Assessment of Antibiotics in a Subtropical River-Reservoir System

Directory of Open Access Journals (Sweden)

Yihan Chen

2018-01-01

Full Text Available Antibiotic pollutions in the aquatic environment have attracted widespread attention due to their ubiquitous distribution and antibacterial properties. The occurrence, distribution, and ecological risk assessment of 17 common antibiotics in this study were preformed in a vital drinking water source represented as a river-reservoir system in South China. In general, 15 antibiotics were detected at least once in the watershed, with the total concentrations of antibiotics in the water samples ranging from 193.6 to 863.3 ng/L and 115.1 to 278.2 μg/kg in the sediment samples. For the water samples, higher rain runoff may contribute to the levels of total concentration in the river system, while perennial anthropic activity associated with the usage pattern of antibiotics may be an important factor determining similar sources and release mechanisms of antibiotics in the riparian environment. Meanwhile, the reservoir system could act as a stable reactor to influence the level and composition of antibiotics exported from the river system. For the sediment samples, hydrological factor in the reservoir may influence the antibiotic distributions along with seasonal variation. Ecological risk assessment revealed that tetracycline and ciprofloxacin could pose high risks in the aquatic environment. Taken together, further investigations should be performed to elaborate the environmental behaviors of antibiotics in the river-reservoir system, especially in drinking water sources.

The NILE system architecture: fault-tolerant, wide-area access to computing and data resources

International Nuclear Information System (INIS)

Ricciardi, Aleta; Ogg, Michael; Rothfus, Eric

1996-01-01

NILE is a multi-disciplinary project building a distributed computing environment for HEP. It provides wide-area, fault-tolerant, integrated access to processing and data resources for collaborators of the CLEO experiment, though the goals and principles are applicable to many domains. NILE has three main objectives: a realistic distributed system architecture design, the design of a robust data model, and a Fast-Track implementation providing a prototype design environment which will also be used by CLEO physicists. This paper focuses on the software and wide-area system architecture design and the computing issues involved in making NILE services highly-available. (author)

Inferring Population Genetic Structure in Widely and Continuously Distributed Carnivores: The Stone Marten (Martes foina) as a Case Study.

Science.gov (United States)

Vergara, María; Basto, Mafalda P; Madeira, María José; Gómez-Moliner, Benjamín J; Santos-Reis, Margarida; Fernandes, Carlos; Ruiz-González, Aritz

2015-01-01

The stone marten is a widely distributed mustelid in the Palaearctic region that exhibits variable habitat preferences in different parts of its range. The species is a Holocene immigrant from southwest Asia which, according to fossil remains, followed the expansion of the Neolithic farming cultures into Europe and possibly colonized the Iberian Peninsula during the Early Neolithic (ca. 7,000 years BP). However, the population genetic structure and historical biogeography of this generalist carnivore remains essentially unknown. In this study we have combined mitochondrial DNA (mtDNA) sequencing (621 bp) and microsatellite genotyping (23 polymorphic markers) to infer the population genetic structure of the stone marten within the Iberian Peninsula. The mtDNA data revealed low haplotype and nucleotide diversities and a lack of phylogeographic structure, most likely due to a recent colonization of the Iberian Peninsula by a few mtDNA lineages during the Early Neolithic. The microsatellite data set was analysed with a) spatial and non-spatial Bayesian individual-based clustering (IBC) approaches (STRUCTURE, TESS, BAPS and GENELAND), and b) multivariate methods [discriminant analysis of principal components (DAPC) and spatial principal component analysis (sPCA)]. Additionally, because isolation by distance (IBD) is a common spatial genetic pattern in mobile and continuously distributed species and it may represent a challenge to the performance of the above methods, the microsatellite data set was tested for its presence. Overall, the genetic structure of the stone marten in the Iberian Peninsula was characterized by a NE-SW spatial pattern of IBD, and this may explain the observed disagreement between clustering solutions obtained by the different IBC methods. However, there was significant indication for contemporary genetic structuring, albeit weak, into at least three different subpopulations. The detected subdivision could be attributed to the influence of the

Inferring Population Genetic Structure in Widely and Continuously Distributed Carnivores: The Stone Marten (Martes foina as a Case Study.

Directory of Open Access Journals (Sweden)

María Vergara

Full Text Available The stone marten is a widely distributed mustelid in the Palaearctic region that exhibits variable habitat preferences in different parts of its range. The species is a Holocene immigrant from southwest Asia which, according to fossil remains, followed the expansion of the Neolithic farming cultures into Europe and possibly colonized the Iberian Peninsula during the Early Neolithic (ca. 7,000 years BP. However, the population genetic structure and historical biogeography of this generalist carnivore remains essentially unknown. In this study we have combined mitochondrial DNA (mtDNA sequencing (621 bp and microsatellite genotyping (23 polymorphic markers to infer the population genetic structure of the stone marten within the Iberian Peninsula. The mtDNA data revealed low haplotype and nucleotide diversities and a lack of phylogeographic structure, most likely due to a recent colonization of the Iberian Peninsula by a few mtDNA lineages during the Early Neolithic. The microsatellite data set was analysed with a spatial and non-spatial Bayesian individual-based clustering (IBC approaches (STRUCTURE, TESS, BAPS and GENELAND, and b multivariate methods [discriminant analysis of principal components (DAPC and spatial principal component analysis (sPCA]. Additionally, because isolation by distance (IBD is a common spatial genetic pattern in mobile and continuously distributed species and it may represent a challenge to the performance of the above methods, the microsatellite data set was tested for its presence. Overall, the genetic structure of the stone marten in the Iberian Peninsula was characterized by a NE-SW spatial pattern of IBD, and this may explain the observed disagreement between clustering solutions obtained by the different IBC methods. However, there was significant indication for contemporary genetic structuring, albeit weak, into at least three different subpopulations. The detected subdivision could be attributed to the influence

Very low level radioactive wastes. Must the doctrine evolve? Reflections by the IRSN for a perennial, fair and liable management

International Nuclear Information System (INIS)

2016-01-01

As large programmes of dismantling of nuclear installations are to be elaborated and implemented during the next decades, it appears the Cires (industrial centre for gathering, warehousing and storage), the single solution for very low level radioactive wastes in France, will be saturated on the short term. Therefore, this report aims at reviewing the present policy of waste management in order to make it more perennial, fairer and more liable. First, it identifies strengths and weaknesses of the present doctrine. It examines the kind of governance necessary to decide how this doctrine should evolve, by taking societal stakes, and debate places and modalities into account. While referring to technological options, it examines the possible orientations for an evolution of management modalities: material valorisation, diversification of storage options, and limitation of waste production

Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange and distinct demographic histories

Science.gov (United States)

Mark J. Statham; James Murdoch; Jan Janecka; Keith B. Aubry; Ceiridwen J. Edwards; Carl D. Soulsbury; Oliver Berry; Zhenghuan Wang; David Harrison; Malcolm Pearch; Louise Tomsett; Judith Chupasko; Benjamin N. Sacks

2014-01-01

Widely distributed taxa provide an opportunity to compare biogeographic responses to climatic fluctuations on multiple continents and to investigate speciation. We conducted the most geographically and genomically comprehensive study to date of the red fox (Vulpes vulpes), the world’s most widely distributed wild terrestrial carnivore. Analyses of 697 bp of...

An Analysis of Weakly Consistent Replication Systems in an Active Distributed Network

OpenAIRE

Amit Chougule; Pravin Ghewari

2011-01-01

With the sudden increase in heterogeneity and distribution of data in wide-area networks, more flexible, efficient and autonomous approaches for management and data distribution are needed. In recent years, the proliferation of inter-networks and distributed applications has increased the demand for geographically-distributed replicated databases. The architecture of Bayou provides features that address the needs of database storage of world-wide applications. Key is the use of weak consisten...

Body Size Distribution of the Dinosaurs

OpenAIRE

O?Gorman, Eoin J.; Hone, David W. E.

2012-01-01

The distribution of species body size is critically important for determining resource use within a group or clade. It is widely known that non-avian dinosaurs were the largest creatures to roam the Earth. There is, however, little understanding of how maximum species body size was distributed among the dinosaurs. Do they share a similar distribution to modern day vertebrate groups in spite of their large size, or did they exhibit fundamentally different distributions due to unique evolutiona...

Distribution of crushing strength of tablets

DEFF Research Database (Denmark)

Sonnergaard, Jørn

2002-01-01

The distribution of a given set of data is important since most parametric statistical tests are based on the assumption that the studied data are normal distributed. In analysis of fracture mechanics the Weibull distribution is widely used and the derived Weibull modulus is interpreted as a mate...... data from nine model tablet formulations and four commercial tablets are shown to follow the normal distribution. The importance of proper cleaning of the crushing strength apparatus is demonstrated....

Phytochemistry and Biological Properties of Burnet Weed (Sanguisorba spp.: A Review

Directory of Open Access Journals (Sweden)

Anestis KARKANIS

2014-12-01

Full Text Available Great burnet (Sanguisorba officinalis L. and small burnet (Sansguisorba minor Scop. are edible, perennial weeds widely distributed in the world. These are the most widespread Sanguisorba species. The bioactive components of Sanguisorba plants include phenolics (phenolic acids, flavonoids and neolignans and terpenoids. Large potential exists to use burnets as medicinal plants. Sanguisorba species are known to show anticancer properties, antioxidative, antimicrobial and antiviral activities. Also, Sanguisorba extracts show anti-Alzheimer and anti-inflammatory properties. Small burnet extracts could also be a useful alternative to synthetic fungicides for crop production. This review focuses on biological activities of Sanguisorba extracts and emphasizing their potential applications in pharmaceutical areas.

Phytochemistry and Biological Properties of Burnet Weed (Sanguisorba spp.: A Review

Directory of Open Access Journals (Sweden)

Anestis KARKANIS

2014-12-01

Full Text Available Great burnet (Sanguisorba officinalis L. and small burnet (Sansguisorba minor Scop. are edible, perennial weeds widely distributed in the world. These are the most widespread Sanguisorba species. The bioactive components of Sanguisorba plants include phenolics (phenolic acids, flavonoids and neolignans and terpenoids. Large potential exists to use burnets as medicinal plants. Sanguisorba species are known to show anticancer properties, antioxidative, antimicrobial and antiviral activities. Also, Sanguisorba extracts show anti-Alzheimer and anti-inflammatory properties. Small burnet extracts could also be a useful alternative to synthetic fungicides for crop production. This review focuses on biological activities of Sanguisorba extracts and emphasizing their potential applications in pharmaceutical areas.

Are trait-scaling relationships invariant across contrasting elevations in the widely distributed treeline species Nothofagus pumilio?

Science.gov (United States)

Fajardo, Alex

2016-05-01

The study of scaling examines the relative dimensions of diverse organismal traits. Understanding whether global scaling patterns are paralleled within species is key to identify causal factors of universal scaling. I examined whether the foliage-stem (Corner's rules), the leaf size-number, and the leaf mass-leaf area scaling relationships remained invariant and isometric with elevation in a wide-distributed treeline species in the southern Chilean Andes. Mean leaf area, leaf mass, leafing intensity, and twig cross-sectional area were determined for 1-2 twigs of 8-15 Nothofagus pumilio individuals across four elevations (including treeline elevation) and four locations (from central Chile at 36°S to Tierra del Fuego at 54°S). Mixed effects models were fitted to test whether the interaction term between traits and elevation was nonsignificant (invariant). The leaf-twig cross-sectional area and the leaf mass-leaf area scaling relationships were isometric (slope = 1) and remained invariant with elevation, whereas the leaf size-number (i.e., leafing intensity) scaling was allometric (slope ≠ -1) and showed no variation with elevation. Leaf area and leaf number were consistently negatively correlated across elevation. The scaling relationships examined in the current study parallel those seen across species. It is plausible that the explanation of intraspecific scaling relationships, as trait combinations favored by natural selection, is the same as those invoked to explain across species patterns. Thus, it is very likely that the global interspecific Corner's rules and other leaf-leaf scaling relationships emerge as the aggregate of largely parallel intraspecific patterns. © 2016 Botanical Society of America.

Autonomous operation of distributed storages in microgrids

DEFF Research Database (Denmark)

Loh, Poh Chiang; Chai, Yi Kai; Li, Ding

2014-01-01

Operation of distributed generators in microgrids has been widely discussed, but would not be fully autonomous if distributed energy storages are not considered. Storages are important since they provide energy buffering to load changes, energy levelling to source variations and ride-through enha......Operation of distributed generators in microgrids has been widely discussed, but would not be fully autonomous if distributed energy storages are not considered. Storages are important since they provide energy buffering to load changes, energy levelling to source variations and ride......-through enhancement to the microgrids. Recognising their importance, this study presents a scheme for sharing power among multiple distributed storages in coordination with the distributed sources and loads. The scheme prompts the storages to autonomously sense for local operating conditions, requesting for maximum...... to help with meeting the extra load demand. The described process takes place autonomously with energy eventually shared among the storages in proportion to their ratings. To test the concepts discussed, experiments have been performed with favourable results obtained for performance verification....

Temperature profile data from XBT casts from a world-wide distribution from the SKOGAFOSS and other vessels as part of NOAA's Volunteer Observing Ships Program from 06 February 2002 to 10 April 2002 (NODC Accession 0000718)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profiles were collected from XBT casts from the SKOGAFOSS and other platforms from a world-wide distribution from 06 February 2002 to 10 April 2002. Data...

Grid-optimized Web 3D applications on wide area network

Science.gov (United States)

Wang, Frank; Helian, Na; Meng, Lingkui; Wu, Sining; Zhang, Wen; Guo, Yike; Parker, Michael Andrew

2008-08-01

Geographical information system has come into the Web Service times now. In this paper, Web3D applications have been developed based on our developed Gridjet platform, which provides a more effective solution for massive 3D geo-dataset sharing in distributed environments. Web3D services enabling web users could access the services as 3D scenes, virtual geographical environment and so on. However, Web3D services should be shared by thousands of essential users that inherently distributed on different geography locations. Large 3D geo-datasets need to be transferred to distributed clients via conventional HTTP, NFS and FTP protocols, which often encounters long waits and frustration in distributed wide area network environments. GridJet was used as the underlying engine between the Web 3D application node and geo-data server that utilizes a wide range of technologies including the one of paralleling the remote file access, which is a WAN/Grid-optimized protocol and provides "local-like" accesses to remote 3D geo-datasets. No change in the way of using software is required since the multi-streamed GridJet protocol remains fully compatible with existing IP infrastructures. Our recent progress includes a real-world test that Web3D applications as Google Earth over the GridJet protocol beats those over the classic ones by a factor of 2-7 where the transfer distance is over 10,000 km.

Dinosaur demise in light of their alleged perennial polar residency

Science.gov (United States)

Lewy, Zeev

2017-10-01

The end-Cretaceous biological crisis is represented by the demise of the non-avian dinosaurs. However, most crucial biologically was the elimination of the photosynthesizing marine phyto- and zooplankton forming the base of the marine food chain. Their abrupt demise attests to sunlight screening darkening the atmosphere for a few years. Alvarez et al. (Science 208:1095-1108, 1980. doi: 10.1126/science.208.44) noticed in deep marine end-Cretaceous sediments an anomalous rise in the chemical element iridium (Ir), which is rare on planet Earth and thus suggests an extraterrestrial origin through an impact of a large asteroid. This impact would have ejected enormous quantities of particles and aerosols, shading the solar illumination as attested to by the elimination of the marine photosynthesizing plankton. Such a dark period must have affected life on land. The apparent cold-blooded non-avian dinosaurs, which were used to living in open terrains to absorb the solar illumination, became inactive during the dark period and were incapable of withstanding predators. This was in contrast to cold-blooded crocodilians, turtles and lizards that could hide in refuge sites on land and in the water. Dinosaur relics discovered in Cretaceous Polar Regions were attributed to perennial residents, surviving the nearly half-year-long dark winter despite their ability to leave. The polar concentrations of disarticulated dinosaur bones were suggested as having resulted from a catastrophic burial of a population by floods. However, this should have fossilized complete skeletons. Alternatively, herds of dinosaurs living in high latitudes might have been sexually driven to spend the half year of continuously illuminated polar summer for mating rather than for nourishment, in which the lower latitudes provided as well. The aggressive mating competitions would have left victims among the rivals and of young ones incidentally trampled over, all being consumed and their skeletons

Hierarchical species distribution models

Science.gov (United States)

Hefley, Trevor J.; Hooten, Mevin B.

2016-01-01

Determining the distribution pattern of a species is important to increase scientific knowledge, inform management decisions, and conserve biodiversity. To infer spatial and temporal patterns, species distribution models have been developed for use with many sampling designs and types of data. Recently, it has been shown that count, presence-absence, and presence-only data can be conceptualized as arising from a point process distribution. Therefore, it is important to understand properties of the point process distribution. We examine how the hierarchical species distribution modeling framework has been used to incorporate a wide array of regression and theory-based components while accounting for the data collection process and making use of auxiliary information. The hierarchical modeling framework allows us to demonstrate how several commonly used species distribution models can be derived from the point process distribution, highlight areas of potential overlap between different models, and suggest areas where further research is needed.

Monitoring Phytophthora ramorum distribution in streams within California watersheds

Science.gov (United States)

S.K. Murphy; C. Lee; Y. Valachovic; J. Bienapfl; W. Mark; A. Jirka; D.R. Owen; T.F. Smith; D.M. Rizzo

2008-01-01

One hundred-thirteen sites were established in perennial watercourses and sampled for 1 to 3 years between 2004 and 2006 to monitor for presence of Phytophthora ramorum throughout coastal central and northern California watersheds as well as portions of the Sierra Nevada mountain range (Murphy and others 2006). The majority of the monitored...

Wide distribution of autochthonous branched glycerol dialkyl glycerol tetraethers (bGDGTs in U.S. Great Basin hot springs

Directory of Open Access Journals (Sweden)

Brian P. Hedlund

2013-08-01

Full Text Available Branched glycerol dialkyl glycerol tetraethers (bGDGTs are membrane-spanning lipids that likely stabilize membranes of some bacteria. Although bGDGTs have been reported previously in certain geothermal environments, it has been suggested that they may derive from surrounding soils since bGDGTs are known to be produced by soil bacteria. To test the hypothesis that bGDGTs can be produced by thermophiles in geothermal environments, we examined the distribution and abundance of bGDGTs, along with extensive geochemical data, in 40 sediment and mat samples collected from geothermal systems in the U.S. Great Basin (temperature: 31-95°C; pH: 6.8-10.7. bGDGTs were found in 38 out of 40 samples at concentrations up to 824 ng/g sample dry mass and comprised up to 99.5% of total GDGTs (branched plus isoprenoidal. The wide distribution of bGDGTs in hot springs, strong correlation between core and polar lipid abundances, distinctness of bGDGT profiles compared to nearby soils, and higher concentration of bGDGTs in hot springs compared to nearby soils provided evidence of in situ production, particularly for the minimally methylated bGDGTs I, Ib, and Ic. Polar bGDGTs were found almost exclusively in samples ≤ 70°C and the absolute abundance of polar bGDGTs correlated negatively with properties of chemically reduced, high temperature spring sources (temperature, H2S/HS- and positively with properties of oxygenated, low temperature sites (O2, NO3-. Two-way cluster analysis and nonmetric multidimensional scaling based on relative abundance of polar bGDGTs supported these relationships and showed a negative relationship between the degree of methylation and temperature, suggesting a higher abundance for minimally methylated bGDGTs at high temperature. This study presents evidence of the widespread production of bGDGTs in mats and sediments of natural geothermal springs in the U.S. Great Basin, especially in oxygenated, low-temperature sites (≤ 70°C.

Wide distribution of autochthonous branched glycerol dialkyl glycerol tetraethers (bGDGTs) in U.S. Great Basin hot springs

Science.gov (United States)

Hedlund, Brian P.; Paraiso, Julienne J.; Williams, Amanda J.; Huang, Qiuyuan; Wei, Yuli; Dijkstra, Paul; Hungate, Bruce A.; Dong, Hailiang; Zhang, Chuanlun L.

2013-01-01

Branched glycerol dialkyl glycerol tetraethers (bGDGTs) are membrane-spanning lipids that likely stabilize membranes of some bacteria. Although bGDGTs have been reported previously in certain geothermal environments, it has been suggested that they may derive from surrounding soils since bGDGTs are known to be produced by soil bacteria. To test the hypothesis that bGDGTs can be produced by thermophiles in geothermal environments, we examined the distribution and abundance of bGDGTs, along with extensive geochemical data, in 40 sediment and mat samples collected from geothermal systems in the U.S. Great Basin (temperature: 31–95°C; pH: 6.8–10.7). bGDGTs were found in 38 out of 40 samples at concentrations up to 824 ng/g sample dry mass and comprised up to 99.5% of total GDGTs (branched plus isoprenoidal). The wide distribution of bGDGTs in hot springs, strong correlation between core and polar lipid abundances, distinctness of bGDGT profiles compared to nearby soils, and higher concentration of bGDGTs in hot springs compared to nearby soils provided evidence of in situ production, particularly for the minimally methylated bGDGTs I, Ib, and Ic. Polar bGDGTs were found almost exclusively in samples ≤70°C and the absolute abundance of polar bGDGTs correlated negatively with properties of chemically reduced, high temperature spring sources (temperature, H2S/HS−) and positively with properties of oxygenated, low temperature sites (O2, NO−3). Two-way cluster analysis and nonmetric multidimensional scaling based on relative abundance of polar bGDGTs supported these relationships and showed a negative relationship between the degree of methylation and temperature, suggesting a higher abundance for minimally methylated bGDGTs at high temperature. This study presents evidence of the widespread production of bGDGTs in mats and sediments of natural geothermal springs in the U.S. Great Basin, especially in oxygenated, low-temperature sites (≤70°C). PMID:23964271

Development, Demonstration, and Field Testing of Enterprise-Wide Distributed Generation Energy Management System: Phase 1 Report

Energy Technology Data Exchange (ETDEWEB)

2003-04-01

This report describes RealEnergy's evolving distributed generation command and control system, called the"Distributed Energy Information System" (DEIS). This system uses algorithms to determine how to operate distributed generation systems efficiently and profitably. The report describes the system and RealEnergy's experiences in installing and applying the system to manage distributed generators for commercial building applications.The report is divided into six tasks. The first five describe the DEIS; the sixth describes RE's regulatory and contractual obligations: Task 1: Define Information and Communications Requirements; Task 2: Develop Command and Control Algorithms for Optimal Dispatch; Task 3: Develop Codes and Modules for Optimal Dispatch Algorithms; Task 4: Test Codes Using Simulated Data; Task 5: Install and Test Energy Management Software; Task 6: Contractual and Regulatory Issues.

Plesionika edwardsi (Brandt, 1851) is a marine species of wide ...

African Journals Online (AJOL)

spamer

Plesionika edwardsi (Brandt, 1851) is a marine species of wide distribution at low latitudes. It is known from the Western Pacific (Philippines,. Indonesia), the Western Atlantic (from South. Carolina and North Bahamas to the Gulf of Mexico), the Eastern Atlantic (from North-West Spain to. Sierra Leone, including the ...

Physical, biological, and chemical data from radiometer, profiling reflectance radiometer, and CTD casts in a world-wide distribution as part of the SeaWiFS/SIMBIOS project from 13 September 1981 to 16 December 1999 (NODC Accession 0000632)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical, biological, and chemical data were collected using radiometer, profiling reflectance radiometer, and CTD casts in a world-wide distribution from 13...

Does polyembryony confer a competitive advantage to the invasive perennial vine Vincetoxicum rossicum (Apocynaceae)?

Science.gov (United States)

Blanchard, Megan L; Barney, Jacob N; Averill, Kristine M; Mohler, Charles L; Ditommaso, Antonio

2010-02-01

Determining which traits may allow some introduced plant species to become invasive in their new environment continues to be a key question in invasion biology. Vincetoxicum rossicum is an invasive, perennial vine colonizing natural and seminatural habitats primarily in the northeastern United States and southeastern Canada. More than half its seeds exhibit polyembryony, a relatively uncommon condition in which a single seed produces multiple seedlings. For evaluating the potential consequences of polyembryony on invasiveness, V. rossicum plants derived from seeds of three embryonic classes-singlets, doublets, and triplets (one, two, and three seedlings per seed, respectively)-were paired in all combinations intraspecifically and with the co-occurring native herbs Solidago canadensis and Asclepias syriaca in a greenhouse study. Vincetoxicum rossicum biomass was 25-55% greater and follicle production 55-100% greater under intraspecific competition compared with interspecific competition. However, within a competitive environment, follicle production varied little. Regardless of competitive environment, V. rossicum originating from seeds with a greater number of embryos typically performed no better than plants arising from seed with fewer embryos (singlets = doublets = triplets)-except intraspecifically where doublets outperformed singlets, and with S. canadensis where triplets outperformed singlets. Our findings suggest that overall performance and fitness of V. rossicum is higher in monocultures than in mixed stands and that its ability to invade new habitats may not be attributable to the production of polyembryonic seeds.

Financing Distributed Generation

International Nuclear Information System (INIS)

Walker, A.

2001-01-01

This paper introduces the engineer who is undertaking distributed generation projects to a wide range of financing options. Distributed generation systems (such as internal combustion engines, small gas turbines, fuel cells and photovoltaics) all require an initial investment, which is recovered over time through revenues or savings. An understanding of the cost of capital and financing structures helps the engineer develop realistic expectations and not be offended by the common requirements of financing organizations. This paper discusses several mechanisms for financing distributed generation projects: appropriations; debt (commercial bank loan); mortgage; home equity loan; limited partnership; vendor financing; general obligation bond; revenue bond; lease; Energy Savings Performance Contract; utility programs; chauffage (end-use purchase); and grants. The paper also discusses financial strategies for businesses focusing on distributed generation: venture capital; informal investors (''business angels''); bank and debt financing; and the stock market

Complete chloroplast genome sequence of a major allogamous forage species, perennial ryegrass (Lolium perenne L.).

Science.gov (United States)

Diekmann, Kerstin; Hodkinson, Trevor R; Wolfe, Kenneth H; van den Bekerom, Rob; Dix, Philip J; Barth, Susanne

2009-06-01

Lolium perenne L. (perennial ryegrass) is globally one of the most important forage and grassland crops. We sequenced the chloroplast (cp) genome of Lolium perenne cultivar Cashel. The L. perenne cp genome is 135 282 bp with a typical quadripartite structure. It contains genes for 76 unique proteins, 30 tRNAs and four rRNAs. As in other grasses, the genes accD, ycf1 and ycf2 are absent. The genome is of average size within its subfamily Pooideae and of medium size within the Poaceae. Genome size differences are mainly due to length variations in non-coding regions. However, considerable length differences of 1-27 codons in comparison of L. perenne to other Poaceae and 1-68 codons among all Poaceae were also detected. Within the cp genome of this outcrossing cultivar, 10 insertion/deletion polymorphisms and 40 single nucleotide polymorphisms were detected. Two of the polymorphisms involve tiny inversions within hairpin structures. By comparing the genome sequence with RT-PCR products of transcripts for 33 genes, 31 mRNA editing sites were identified, five of them unique to Lolium. The cp genome sequence of L. perenne is available under Accession number AM777385 at the European Molecular Biology Laboratory, National Center for Biotechnology Information and DNA DataBank of Japan.

Beclomethasone Dipropionate Nasal Aerosol in Patients with Perennial Allergic Rhinitis (BALANCE) study: 6-month results.

Science.gov (United States)

Bukstein, Donald; Parikh, Ruchir; Eid, Sherrine; Ferro, Thomas; Morello, Jean-Pierre

2016-01-01

Perennial allergic rhinitis (PAR) exerts significant quality-of-life and economic burdens on society. Beclomethasone dipropionate (BDP) nasal aerosol is the first nonaqueous, hydrofluoroalkane-propelled intranasal corticosteroid approved for patients in the United States to treat PAR and seasonal allergic rhinitis. To evaluate real-world effectiveness of BDP nasal aerosol from the patient's perspective by using a postmarketing observational registry. Patients (N = 824) from 43 U.S. study sites completed monthly patient-reported outcome instruments, including the Rhinitis Control Assessment Test (primary outcome variable), Treatment Satisfaction Questionnaire for Medication, Work Productivity and Activity Impairment Questionnaire plus Classroom Impairment Questions: Allergy-Specific, Pittsburgh Sleep Quality Index, and Mini Rhinoconjunctivitis Quality of Life Questionnaire for 6 months. The primary outcome assessment (Rhinitis Control Assessment Test score) (N = 527) indicated significant symptomatic improvement over baseline beginning at month 1 (p 78.8% of respondents who achieved clinically meaningful improvement over 6 months. Secondary outcome measures Mini Rhinoconjunctivitis Quality of Life Questionnaire (p Work Productivity and Activity Impairment Questionnaire plus Classroom Impairment Questions: Allergy-Specific, with the exception of work time missed and class time missed, were significantly (p life, work, and school-related activities, and is associated with high patient satisfaction, reduced productivity loss and activity impairment, and improvement in sleep quality.

Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen.

Science.gov (United States)

Edwards, Joan E; Kingston-Smith, Alison H; Jimenez, Hugo R; Huws, Sharon A; Skøt, Kirsten P; Griffith, Gareth W; McEwan, Neil R; Theodorou, Michael K

2008-12-01

Anaerobic fungi (Neocallimastigales) are active degraders of fibrous plant material in the rumen. However, only limited information is available relating to how quickly they colonize ingested feed particles. The aim of this study was to determine the dynamics of initial colonization of forage by anaerobic fungi in the rumen and the impact of different postsampling wash procedures used to remove loosely associated microorganisms. Neocallimastigales-specific molecular techniques were optimized to ensure maximal coverage before application to assess the population size (quantitative PCR) and composition (automated ribosomal intergenic spacer analysis) of the colonizing anaerobic fungi. Colonization of perennial ryegrass (PRG) was evident within 5 min, with no consistent effect of time or wash procedure on fungal population composition. Wash procedure had no effect on population size unlike time, which had a significant effect. Colonizing fungal population size continued to increase over the incubation period after an initial lag of c. 4 min. This dynamic differs from that reported previously for rumen bacteria, where substantial colonization of PRG occurred within 5 min. The observed delay in colonization of plant material by anaerobic fungi is suggested to be primarily mediated by the time taken for fungal zoospores to locate, attach and encyst on plant material.

World wide web implementation of the Langley technical report server

Science.gov (United States)

Nelson, Michael L.; Gottlich, Gretchen L.; Bianco, David J.

1994-01-01

On January 14, 1993, NASA Langley Research Center (LaRC) made approximately 130 formal, 'unclassified, unlimited' technical reports available via the anonymous FTP Langley Technical Report Server (LTRS). LaRC was the first organization to provide a significant number of aerospace technical reports for open electronic dissemination. LTRS has been successful in its first 18 months of operation, with over 11,000 reports distributed and has helped lay the foundation for electronic document distribution for NASA. The availability of World Wide Web (WWW) technology has revolutionized the Internet-based information community. This paper describes the transition of LTRS from a centralized FTP site to a distributed data model using the WWW, and suggests how the general model for LTRS can be applied to other similar systems.

Languages, compilers and run-time environments for distributed memory machines

CERN Document Server

Saltz, J

1992-01-01

Papers presented within this volume cover a wide range of topics related to programming distributed memory machines. Distributed memory architectures, although having the potential to supply the very high levels of performance required to support future computing needs, present awkward programming problems. The major issue is to design methods which enable compilers to generate efficient distributed memory programs from relatively machine independent program specifications. This book is the compilation of papers describing a wide range of research efforts aimed at easing the task of programmin

Collaborative Information Agents on the World Wide Web

Science.gov (United States)

Chen, James R.; Mathe, Nathalie; Wolfe, Shawn; Koga, Dennis J. (Technical Monitor)

1998-01-01

In this paper, we present DIAMS, a system of distributed, collaborative information agents which help users access, collect, organize, and exchange information on the World Wide Web. Personal agents provide their owners dynamic displays of well organized information collections, as well as friendly information management utilities. Personal agents exchange information with one another. They also work with other types of information agents such as matchmakers and knowledge experts to facilitate collaboration and communication.

Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy.

Science.gov (United States)

Chen, Min; Tan, Qiuping; Sun, Mingyue; Li, Dongmei; Fu, Xiling; Chen, Xiude; Xiao, Wei; Li, Ling; Gao, Dongsheng

2016-06-01

Bud dormancy in deciduous fruit trees is an important adaptive mechanism for their survival in cold climates. The WRKY genes participate in several developmental and physiological processes, including dormancy. However, the dormancy mechanisms of WRKY genes have not been studied in detail. We conducted a genome-wide analysis and identified 58 WRKY genes in peach. These putative genes were located on all eight chromosomes. In bioinformatics analyses, we compared the sequences of WRKY genes from peach, rice, and Arabidopsis. In a cluster analysis, the gene sequences formed three groups, of which group II was further divided into five subgroups. Gene structure was highly conserved within each group, especially in groups IId and III. Gene expression analyses by qRT-PCR showed that WRKY genes showed different expression patterns in peach buds during dormancy. The mean expression levels of six WRKY genes (Prupe.6G286000, Prupe.1G393000, Prupe.1G114800, Prupe.1G071400, Prupe.2G185100, and Prupe.2G307400) increased during endodormancy and decreased during ecodormancy, indicating that these six WRKY genes may play a role in dormancy in a perennial fruit tree. This information will be useful for selecting fruit trees with desirable dormancy characteristics or for manipulating dormancy in genetic engineering programs.

Genome-Wide Characterization and Expression Profiling of the AUXIN RESPONSE FACTOR (ARF) Gene Family in Eucalyptus grandis

Science.gov (United States)

Yu, Hong; Soler, Marçal; Mila, Isabelle; San Clemente, Hélène; Savelli, Bruno; Dunand, Christophe; Paiva, Jorge A. P.; Myburg, Alexander A.; Bouzayen, Mondher; Grima-Pettenati, Jacqueline; Cassan-Wang, Hua

2014-01-01

Auxin is a central hormone involved in a wide range of developmental processes including the specification of vascular stem cells. Auxin Response Factors (ARF) are important actors of the auxin signalling pathway, regulating the transcription of auxin-responsive genes through direct binding to their promoters. The recent availability of the Eucalyptus grandis genome sequence allowed us to examine the characteristics and evolutionary history of this gene family in a woody plant of high economic importance. With 17 members, the E. grandis ARF gene family is slightly contracted, as compared to those of most angiosperms studied hitherto, lacking traces of duplication events. In silico analysis of alternative transcripts and gene truncation suggested that these two mechanisms were preeminent in shaping the functional diversity of the ARF family in Eucalyptus. Comparative phylogenetic analyses with genomes of other taxonomic lineages revealed the presence of a new ARF clade found preferentially in woody and/or perennial plants. High-throughput expression profiling among different organs and tissues and in response to environmental cues highlighted genes expressed in vascular cambium and/or developing xylem, responding dynamically to various environmental stimuli. Finally, this study allowed identification of three ARF candidates potentially involved in the auxin-regulated transcriptional program underlying wood formation. PMID:25269088

Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF gene family in Eucalyptus grandis.

Directory of Open Access Journals (Sweden)

Hong Yu

Full Text Available Auxin is a central hormone involved in a wide range of developmental processes including the specification of vascular stem cells. Auxin Response Factors (ARF are important actors of the auxin signalling pathway, regulating the transcription of auxin-responsive genes through direct binding to their promoters. The recent availability of the Eucalyptus grandis genome sequence allowed us to examine the characteristics and evolutionary history of this gene family in a woody plant of high economic importance. With 17 members, the E. grandis ARF gene family is slightly contracted, as compared to those of most angiosperms studied hitherto, lacking traces of duplication events. In silico analysis of alternative transcripts and gene truncation suggested that these two mechanisms were preeminent in shaping the functional diversity of the ARF family in Eucalyptus. Comparative phylogenetic analyses with genomes of other taxonomic lineages revealed the presence of a new ARF clade found preferentially in woody and/or perennial plants. High-throughput expression profiling among different organs and tissues and in response to environmental cues highlighted genes expressed in vascular cambium and/or developing xylem, responding dynamically to various environmental stimuli. Finally, this study allowed identification of three ARF candidates potentially involved in the auxin-regulated transcriptional program underlying wood formation.

Pollen limitation and reduced reproductive success are associated with local genetic effects in Prunus virginiana, a widely distributed self-incompatible shrub.

Science.gov (United States)

Suarez-Gonzalez, Adriana; Good, Sara V

2014-03-01

A vast quantity of empirical evidence suggests that insufficient quantity or quality of pollen may lead to a reduction in fruit set, in particular for self-incompatible species. This study uses an integrative approach that combines field research with marker gene analysis to understand the factors affecting reproductive success in a widely distributed self-incompatible species, Prunus virginiana (Rosaceae). Twelve patches of P. virginiana distributed within three populations that differed in degree of disturbance were examined. Two of the sites were small (7-35 km(2)) remnants of forest in an intensively used agricultural landscape, while the third was continuous (350 km(2)) and less disturbed. Field studies (natural and hand cross-pollinations) were combined with marker gene analyses (microsatellites and S-locus) in order to explore potential factors affecting pollen delivery and consequently reproductive success at landscape (between populations) and fine scales (within populations). Reductions in reproductive output were found in the two fragments compared with the continuous population, and suggest that pollen is an important factor limiting fruit production. Genetic analyses carried out in one of the fragments and in the continuous site suggest that even though S-allele diversity is high in both populations, the fragment exhibits an increase in biparental inbreeding and correlated paternity. The increase in biparental inbreeding in the fragment is potentially attributable to variation in the density of individuals and/or the spatial distribution of genotypes among populations, both of which could alter mating dynamics. By using a novel integrative approach, this study shows that even though P. virginiana is a widespread species, fragmented populations can experience significant reductions in fruit set and pollen limitation in the field. Deatiled examination of one fragmented population suggests that these linitations may be explained by an increase in

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

DEFF Research Database (Denmark)

Bulik-Sullivan, Brendan K.; Loh, Po-Ru; Finucane, Hilary K.

2015-01-01

Both polygenicity (many small genetic effects) and confounding biases, such as cryptic relatedness and population stratification, can yield an inflated distribution of test statistics in genome-wide association studies (GWAS). However, current methods cannot distinguish between inflation from...