WorldWideScience

Sample records for ware material provenance

  1. Provenance of unknown plutonium material.

    Science.gov (United States)

    Nicolaou, G

    2008-10-01

    The determination of the provenance of 'unknown' plutonium material is demonstrated through a simulation study based on an isotopic fingerprinting approach. Plutonium of known provenance was considered as the 'unknown' nuclear material in order to evaluate the potential of the approach and verify its predictive capabilities. Factor analysis was used to compare the Pu isotopic composition of the 'unknown' material with Pu isotopic compositions simulating well known spent fuels from a range of commercial nuclear power stations. The provenance of the 'unknown material' is assigned to the commercial fuel with which exhibits the highest degree of similarity with respect to the Pu composition. The approach appears promising since it accurately predicted the provenance of the one 'unknown' sample considered; nevertheless, the approach is still at the development stage. Important challenging issues related to the simulation uncertainties and its testing on real laboratory samples have to be explored prior to evaluating the potential of the approach.

  2. Waring decompositions of monomials

    National Research Council Canada - National Science Library

    Buczyńska, Weronika; Buczyński, Jarosław; Teitler, Zach

    2013-01-01

    .... We prove that any Waring decomposition of a monomial is obtained from a complete intersection ideal, determine the dimension of the set of Waring decompositions, and give the conditions under which...

  3. Ambiguous pots: Everyday practice, migration and materiality. The case of medieval Baltic ware on the island of Bornholm (Denmark)

    DEFF Research Database (Denmark)

    Naum, Magdalena

    2012-01-01

    importance of daily practices and mundane objects indealing with a rupture caused by migration. As a case study I use an example of medieval(eleventh century) Western Slavic migration to the island of Bornholm (Denmark) andproduction and daily handling of ceramic pots, the so-called Baltic ware. I explore...

  4. A global renewable mix with proven technologies and common materials

    Science.gov (United States)

    Ballabrera, J.; Garcia-Olivares, A.; Garcia-Ladona, E.; Turiel, A.

    2012-04-01

    A global alternative mix to fossil fuels is proposed, based on proven renewable energy technologies that do not use scarce materials. Taking into account the availability of materials, the resulting mix consists of a combination of onshore and offshore wind turbines, concentrating solar power stations, hydroelectricity and wave power devices attached to the offshore turbines. Solar photovoltaic power could contribute to the mix if its dependence on scarce materials is solved. Material requirements are studied for the generation, power transport and for some future transport systems. The order of magnitude of copper, aluminium, neodymium, lithium, nickel, zinc and platinum that might be required for the proposed solution is obtained and compared with available reserves. While the proposed global alternative to fossil fuels seems technically feasible, lithium, nickel and platinum could become limiting materials for future vehicles fleet if no global recycling system were implemented and rechargeable zinc-air batteries could not be developed. As much as 60% of the current copper reserves would have to be employed in the implementation of the proposed solution. Altogether, the availability of materials may become a long-term physical constraint, preventing the continuation of the usual exponential growth of energy consumption.

  5. 開放式課程教材之著作權問題研究 Research on Copyright Issues of OpenCourseWare Materials

    Directory of Open Access Journals (Sweden)

    Hui-Wen Hsieh

    2011-03-01

    Full Text Available 開放式課程(OpenCourseWare自2002年美國麻省理工學院正式發布後,世界各地之大學紛紛無償地開放課程與教材於網路上,供大眾學習、分享。當教師在課堂上教學時,或多或少都會利用他人著作設計教材,一旦教材於網路上公開傳輸,原本屬於合理使用的教材即有侵權的隱憂。本研究旨在探討教師進行開放式課程教學時之著作權問題及其看法,主要目的包括:(一了解教師目前從事開放式課程教學及教材利用之情形;(二分析教師利用開放式課程教材之著作權問題;(三探討教師對於開放式課程教材之合理使用的看法。研究採半結構性訪談法,以參與國立台灣師範大學開放式課程計畫之教師為研究對象。最後並根據研究結果提出建議,以做為大學校院進行開放式課程之參考。Since Massachusetts Institute of Technology (MIT published OpenCourseWare (OCW in 2002, universities around the world continually and openly upload courses and teaching materials to the Internet and share with the people to use for free. However, teachers more or less use teaching materials designed by others when they give courses. Once these courses are uploaded to the Internet publicly, the fair use purposes of these teaching materials may confront problems of copyright infringement. The purposes of this study were: (1 To explore teachers’ usage of digital teaching materials; (2 To analyze the problems of copyright infringement when teachers using OpenCourseWare materials; (3 To discuss teachers’ opinions on issues about fair use doctrine of OpenCourseWare materials. This study uses methods through semi-structured interviews with teachers who participate in the project of National Taiwan Normal University OpenCourseWare (NTNU OCW. From the results of the study, recommendations for universities and colleges that publish OpenCourseWare are provided.

  6. Maximum Waring ranks of monomials

    OpenAIRE

    Holmes, Erik; Plummer, Paul; Siegert, Jeremy; Teitler, Zach

    2013-01-01

    We show that monomials and sums of pairwise coprime monomials in four or more variables have Waring rank less than the generic rank, with a short list of exceptions. We asymptotically compare their ranks with the generic rank.

  7. Page 1 601 Waring's problem for cubes (Chowla), 1. Waring's ...

    Indian Academy of Sciences (India)

    Waring's problem, on I (k) in, and an analogous function (Chowla), 269. Wood, lignin and wood-cellulose, X-ray studies (Nilakantan), 166. X-ray analysis of the structure of a fibrous modification of tourmaline (Swamy and Iyengar), 419. X-ray studies of wood, lignin and wood-cellulose (Nilakantan), 166.

  8. The cuisine of the Pitted Ware Culture

    DEFF Research Database (Denmark)

    Philippsen, Bente; Persson, Per

    The Pitted Ware Culture is a Middle Neolithic culture in southwestern Scandinavia. It appears about thousand years after the introduction of agriculture to this area. In some regions, it is characterized by an almost fully “Mesolithic” economy with a heavy reliance on seal hunting. In Djursland, ...... sample types. At some of the West Swedish sites, food residues on pottery are the only datable material. Therefore, the reconstruction of ingredients by stable isotope analysis is vital to assess the risk of radiocarbon reservoir effects....

  9. Plagiarism of online material may be proven using the Internet Archive Wayback Machine (archive.org).

    Science.gov (United States)

    Pearce, David; Charlton, Bruce G

    2009-12-01

    Many writers and researchers are reluctant to publish online for fear that their work will be plagiarized and used without attribution elsewhere. For example, junior or freelance researchers may worry that their ideas will be 'stolen' and published under the name of professional or senior researchers; and that then it could be hard to convince people that in fact the idea had originated elsewhere. However, if this happens, plagiarism may be objectively proven by a service called the Internet Archive Wayback Machine (archive.org). Archive.org permits clarification of the issue of dates--and allows the reader to draw their own conclusions about authorship, whether charitable or otherwise. In sum, archive.org is a little known, freely available and potentially very useful mechanism for defending intellectual property rights.

  10. Economic Analyses of Ware Yam Production in Orlu Agricultural ...

    African Journals Online (AJOL)

    The study was conducted in Orlu Agricultural Zone of Imo State Nigeria. Specifically this study examined socioeconomic characteristics of the ware yam farmers, estimated the gross margin of producing ware yam, and determined allocative efficiency of ware yam farmers. Primary data were collected and analyzed using ...

  11. The determination of chlorofluorocarbons and extractives in the expanded and disposable polystyrene ware.

    Science.gov (United States)

    Sam, C T; Chua, T H

    1991-10-01

    Residual chlorofluorocarbons (CFCs) and water-extractive residues in expanded polystyrene ware were determined because of the threat to environmental and public health arising from the ozone depleting potential of CFCs and the leaching of toxic monomers and oligomers into food and drink. Chlorofluorocarbon in expanded polystyrene ware was analysed using headspace gas chromatography in the flame ionization mode, and confirmed by gas chromatography-mass spectrometry. The amount of extractive residue leached from this type of polymeric material was determined using an aqueous medium simulating categories of food and beverages. A wide range of concentrations of CFC-12 (dichlorodifluorocarbon) was detected in the styrofoam ware. It fluctuated between a low of 32 ppm and a high of 35471 ppm in two different samples of styrofoam plates. Similarly, the highest and lowest levels of extractive residue detected in two different styrofoam plates were 54 ppm and 0.5 ppm respectively. CFC-22 or HCFC (chlorodifluorocarbon) was absent from these expanded polystyrene ware. The continued use of chlorofluorocarbons as a blowing agent will further exert a deleterious effect on the stratospheric ozone layer. Though the level of water extractive residue from these expanded polystyrene ware was relatively safe, public health could be further safe-guarded through improvmeents in raw material selection and mode of production.

  12. Waring's Problem and the Circle Method

    Indian Academy of Sciences (India)

    ematicalOlympiad. Programme at different levels since 1989. His research interests lie in number theory; his other interests include classical music and mountaineering. the problems they worked on. Their proof of a slightly. Keywords weaker form of Ramanujan's original formula was pub-. Waring's problem, circle method,.

  13. Review of Coins and Samian Ware

    Directory of Open Access Journals (Sweden)

    Murray Jack Andrews

    2014-06-01

    Full Text Available It is no secret that samian ware plays a key role in dating the archaeology of the western Roman Empire; the ubiquitous brown, orange and red-slipped sherds are distinctive and abundant enough for detailed study, which has in turn yielded valuable information concerning chronologies of production and deposition from the 1st  century AD onwards. Since dates inferred from samian deposits have obvious implications for the dating of other artefact classes and sites, it is clear that a critical reassessment of the foundations of samian chronology is a task of considerable importance for Roman archaeology more generally. Addressing this task is one of the main aims of this monograph, a much anticipated revised edition of Anthony King’s 1985 PhD study of the chronology of samian ware in the northwest Empire during the late 2nd  to mid 3rd  centuries AD.

  14. The Waring formula and fusion rings

    Science.gov (United States)

    Chair, Noureddine

    2001-02-01

    The potential that generates the cohomology ring of the Grassmannian is given in terms of the elementary symmetric functions using the Waring formula that computes the power sum of roots of an algebraic equation in terms of its coefficients. As a consequence, the fusion potential for su( N) K is obtained. This potential is the explicit Chebyshev polynomial in several variables of the first kind. We also derive the fusion potential for sp( N) K from a reciprocal algebraic equation. This potential is identified with another Chebyshev polynomial in several variables. We display a connection between these fusion potentials and generalized Fibonacci and Lucas numbers. In the case of su( N) K the generating function for the generalized Fibonacci numbers obtained are in agreement with Lascoux using the theory of symmetric functions. For sp( N) K, however, the generalized Fibonacci numbers are obtained from new sequences.

  15. Re-theorising mobility and the formation of culture and language among the Corded Ware Culture in Europe

    DEFF Research Database (Denmark)

    Kristiansen, Kristian; Allentoft, Morten E.; Frei, Karin M.

    2017-01-01

    Recent genetic, isotopic and linguistic research has dramatically changed our understanding of how the Corded Ware Culture in Europe was formed. Here the authors explain it in terms of local adaptations and interactions between migrant Yamnaya people from the Pontic-Caspian steppe and indigenous...... North European Neolithic cultures. The original herding economy of the Yamnaya migrants gradually gave way to new practices of crop cultivation, which led to the adoption of new words for those crops. The result of this hybridisation process was the formation of a new material culture, the Corded Ware...

  16. Cliffs' GRE StudyWare Package: A Critical Evaluation.

    Science.gov (United States)

    Brooke, Stephanie L.

    1995-01-01

    Provides evaluation of Cliffs' GRE StudyWare package (Bobrow, 1992). Discusses the educational implications of using Cliffs' approach, in addition to focusing on software considerations. Makes recommendations concerning Cliffs' method for Graduate Record Examination (GRE) preparation. (Author/LKS)

  17. Optimization of ware-house activity of enterprise

    OpenAIRE

    PELENSKYY. R.A

    2012-01-01

    Analytical research is conducted of activity of control system by composition and of organization of ware-house operations of market enterprise of building industry and the ways of their improvement are offered with application of logistic approach, introduction of the newest technologies and informative systems for the rational placing of supplies, іх maintenance, account and optimal use of ware-house areas.

  18. Evaluating NTU's OpenCourseWare Project with Google Analytics: User Characteristics, Course Preferences, and Usage Patterns

    Science.gov (United States)

    Sheu, Feng-Ru; Shih, Meilun

    2017-01-01

    As freely adoptable digital resources, OpenCourseWare (OCW) have become a prominent form of Open Educational Resources (OER). More than 275 institutions in the worldwide OCW consortium have committed to creating free access open course materials. Despite the resources and efforts to create OCW worldwide, little understanding of its use exists.…

  19. 76 FR 2708 - Porcelain-on-Steel Cooking Ware From Taiwan; Top-of-the-Stove Stainless Steel Cooking Ware From...

    Science.gov (United States)

    2011-01-14

    ... (Third Review)] Porcelain-on-Steel Cooking Ware From Taiwan; Top-of-the-Stove Stainless Steel Cooking... revocation of the antidumping duty order on imports of porcelain-on-steel cooking ware from Taiwan and the antidumping and countervailing duty orders on imports of top-of-the- stove stainless steel cooking ware from...

  20. Characterization of raw materials to obtain the mass for white ware, using waste glass; Caracterizacao de materiais-primas visando a obtencao de massas para ceramica branca, utilizando residuos de vidro plano

    Energy Technology Data Exchange (ETDEWEB)

    Cavalcanti, M.S.L. [Universidade Federal de Campina Grande (CCT/UFCG), PB (Brazil). Centro de Ciencias e Tecnologia; Porto, V.S.; Meneses, R.L; Albuquerque, A.V.; Guedes, B.F.R.; Morais, C.R.S.; Santana, L.N.L. [Universidade Federal de Campina Grande (CCT/UFCG), PB (Brazil). Centro de Ciencias e Tecnologia. Unidade Academica de Engenharia de Materiais

    2009-07-01

    A major problem faced in the post modern society is the huge amount of glass, accumulated in landfills cities. The glass material is one hundred percent recyclable and has the property to act as fluxes as well as feldspar. Given this premise, this study aimed to characterize materials - raw materials and waste glass regional plan for development of ceramic bodies with the similar behavior produced industrially, using shards of glass to partially replace the feldspar. The materials - raw materials used were clay, ball clay, kaolin, quartz, feldspar and shard of glass, being characterized by the techniques: chemical analysis, size analysis, differential thermal analysis vibrational spectroscopy in the infrared region, the Ray-Diffraction X and scanning electron microscopy. The results showed that the waste had higher rates of vitreous oxides fluxes and similar. (author)

  1. 78 FR 60245 - Privacy Act Systems of Records; LabWare Laboratory Information Management System

    Science.gov (United States)

    2013-10-01

    ... Office of the Secretary Privacy Act Systems of Records; LabWare Laboratory Information Management System... is the LabWare Laboratory Information Management System, USDA-APHIS-19. This notice is necessary to... (USDA) is proposing to add a new system of records, entitled LabWare Laboratory Information Management...

  2. 76 FR 12369 - Porcelain-on-Steel Cooking Ware From China

    Science.gov (United States)

    2011-03-07

    ... COMMISSION Porcelain-on-Steel Cooking Ware From China Determination On the basis of the record \\1\\ developed... antidumping duty order on porcelain-on-steel cooking ware from China would be likely to lead to continuation... 2011), entitled Porcelain-on-Steel Cooking Ware from China: Investigation No. 731-TA- 298 (Third Review...

  3. Comparative economic analysis of yam minisett and ware yam ...

    African Journals Online (AJOL)

    This study on comparative economic analysis of yam minisett and ware yam production was conducted using 150 yam farmers as respondents. A structured questionnaire was used in collecting data from the yam farmers. Statistical tools such as frequency distribution, percentages, means and gross margin were used for ...

  4. Flow-Based Provenance

    National Research Council Canada - National Science Library

    Sabah Al-Fedaghi

    2017-01-01

    ...: Multiple models for abstract representation of provenance have been proposed to describe entities, people, and activities involved in producing a piece of data, including the Open Provenance Model (OPM...

  5. Adsorption of Ten Microcystin Congeners to Common Laboratory-Ware Is Solvent and Surface Dependent

    Directory of Open Access Journals (Sweden)

    Stefan Altaner

    2017-04-01

    Full Text Available Cyanobacteria can produce heptapetides called microcystins (MC which are harmful to humans due to their ability to inhibit cellular protein phosphatases. Quantitation of these toxins can be hampered by their adsorption to common laboratory-ware during sample processing and analysis. Because of their structural diversity (>100 congeners and different physico-chemical properties, they vary in their adsorption to surfaces. In this study, the adsorption of ten different MC congeners (encompassing non-arginated to doubly-arginated congeners to common laboratory-ware was assessed using different solvent combinations. Sample handling steps were mimicked with glass and polypropylene pipettes and vials with increasing methanol concentrations at two pH levels, before analysis by liquid chromatography-tandem mass spectrometry. We demonstrated that MC adsorb to polypropylene surfaces irrespective of pH. After eight successive pipet actions using polypropylene tips ca. 20% of the MC were lost to the surface material, which increased to 25%–40% when solutions were acidified. The observed loss was alleviated by changing the methanol (MeOH concentration in the final solvent. The required MeOH concentration varied depending on which congener was present. Microcystins only adsorbed to glass pipettes (loss up to 30% after eight pipet actions when in acidified aqueous solutions. The latter appeared largely dependent on the presence of ionizable groups, such as arginine residues.

  6. A Study of the Evaluation Dimensions and Criteria for OpenCourseWare Websites

    Directory of Open Access Journals (Sweden)

    Yi-Ju Wang

    2015-04-01

    Full Text Available OpenCourseWare (OCW, a set of free-of-use learning materials established by universities, became quite a success over the years and aroused the users’ willingness to learn online. However, the design of OCW websites, including the structure, organization of learning resources and interfaces is multi-variant and disordered. The system and arrangement are still lacking of an evaluation standard. The goal of this study is to establish and verify the dimensions and the criteria that are suitable for evaluation of OCW websites. To achieve the research goal, the researchers performed document analysis and the Delphi Method. Sixteen experts in a total took part in the Delphi panel. By giving three rounds of questionnaire to those experts in the self-developed e-Delphi system, the researcher gathered their opinions then analyzed them back and forth. The final edition of the Evaluation Dimensions and Criteria for OpenCourseWare Website includes seven dimensions with fifty-seven criteria. Finally, concrete suggestions for OCW website establishment and administration were provided. Implications and recommendations for future research were also addressed.

  7. Phase and Micro-Structural Characterization of Sanitary-Ware Fired at Different Temperature

    OpenAIRE

    ATHER HASSAN; YASEEN IQBAL; SYED ZAFAR ILYAS

    2017-01-01

    The three main ingredients of sanitary-ware are clay, feldspar and quartz. This ware is being widely used and has therefore, attracted the attention of researchers from time to time. Consequently, it has been extensively investigated. The present study describes the phase and micro-structural analysis of sanitary-ware samples collected from local (Durr Ceramics Peshawar) industry. XRD (X-Ray Diffraction) of samples fired at 1100oC reveals the presence of ? ? ? ? ?-quartz and primary mullite o...

  8. Layering in Provenance Systems

    OpenAIRE

    Seltzer, Margo I.; Muniswamy-Reddy, Kiran-Kumar; Braun, Uri Jacob; Holland, David A.; Macko, Peter; Maclean, Diana; Margo, Daniel Wyatt; Smogor, Robin

    2009-01-01

    Digital provenance describes the ancestry or history of a digital object. Most existing provenance systems, however, operate at only one level of abstraction: the sys- tem call layer, a workflow specification, or the high-level constructs of a particular application. The provenance collectable in each of these layers is different, and all of it can be important. Single-layer systems fail to account for the different levels of abstraction at which users need to reason about their data and proc...

  9. Flow-Based Provenance

    Directory of Open Access Journals (Sweden)

    Sabah Al-Fedaghi

    2017-02-01

    Full Text Available Aim/Purpose: With information almost effortlessly created and spontaneously available, current progress in Information and Communication Technology (ICT has led to the complication that information must be scrutinized for trustworthiness and provenance. Information systems must become provenance-aware to be satisfactory in accountability, reproducibility, and trustworthiness of data. Background:\tMultiple models for abstract representation of provenance have been proposed to describe entities, people, and activities involved in producing a piece of data, including the Open Provenance Model (OPM and the World Wide Web Consortium. These models lack certain concepts necessary for specifying workflows and encoding the provenance of data products used and generated. Methodology: Without loss of generality, the focus of this paper is on OPM depiction of provenance in terms of a directed graph. We have redrawn several case studies in the framework of our proposed model in order to compare and evaluate it against OPM for representing these cases. Contribution: This paper offers an alternative flow-based diagrammatic language that can form a foundation for modeling of provenance. The model described here provides an (abstract machine-like representation of provenance. Findings: The results suggest a viable alternative in the area of diagrammatic representation for provenance applications. Future Research: Future work will seek to achieve more accurate comparisons with current models in the field.

  10. Proven Weight Loss Methods

    Science.gov (United States)

    Fact Sheet Proven Weight Loss Methods What can weight loss do for you? Losing weight can improve your health in a number of ways. ... you feel better. There are proven ways to lose weight. You can find what works for you. Research ...

  11. Scenarios for the Use of OpenCourseWare in the Context of Student Mobility

    Science.gov (United States)

    Truyen, Fred; Verbeken, Stephanie

    2014-01-01

    In the context of a European OpenCourseWare project, funded by the EU Lifelong Learning Program, a handbook has been created with the purpose of showing how students and universities throughout Europe can get the most out of OpenCourseWare in order to become part of new learning communities and facilitate virtual exchange across borders. The main…

  12. 76 FR 2920 - Porcelain-on-Steel Cooking Ware From China

    Science.gov (United States)

    2011-01-18

    ... COMMISSION Porcelain-on-Steel Cooking Ware From China AGENCY: United States International Trade Commission. ACTION: Scheduling of an expedited five-year review concerning the antidumping duty order on porcelain-on... determine whether revocation of the antidumping duty order on porcelain-on-steel cooking ware from China...

  13. Provenance in neuroimaging.

    Science.gov (United States)

    Mackenzie-Graham, Allan J; Van Horn, John D; Woods, Roger P; Crawford, Karen L; Toga, Arthur W

    2008-08-01

    Provenance, the description of the history of a set of data, has grown more important with the proliferation of research consortia-related efforts in neuroimaging. Knowledge about the origin and history of an image is crucial for establishing data and results quality; detailed information about how it was processed, including the specific software routines and operating systems that were used, is necessary for proper interpretation, high fidelity replication and re-use. We have drafted a mechanism for describing provenance in a simple and easy to use environment, alleviating the burden of documentation from the user while still providing a rich description of an image's provenance. This combination of ease of use and highly descriptive metadata should greatly facilitate the collection of provenance and subsequent sharing of data.

  14. Provenance in bioinformatics workflows.

    Science.gov (United States)

    de Paula, Renato; Holanda, Maristela; Gomes, Luciana S A; Lifschitz, Sergio; Walter, Maria Emilia M T

    2013-01-01

    In this work, we used the PROV-DM model to manage data provenance in workflows of genome projects. This provenance model allows the storage of details of one workflow execution, e.g., raw and produced data and computational tools, their versions and parameters. Using this model, biologists can access details of one particular execution of a workflow, compare results produced by different executions, and plan new experiments more efficiently. In addition to this, a provenance simulator was created, which facilitates the inclusion of provenance data of one genome project workflow execution. Finally, we discuss one case study, which aims to identify genes involved in specific metabolic pathways of Bacillus cereus, as well as to compare this isolate with other phylogenetic related bacteria from the Bacillus group. B. cereus is an extremophilic bacteria, collected in warm water in the Midwestern Region of Brazil, its DNA samples having been sequenced with an NGS machine.

  15. Total dissolved gas prediction and optimization in RiverWare

    Energy Technology Data Exchange (ETDEWEB)

    Stewart, Kevin M. [Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Witt, Adam M. [Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Hadjerioua, Boualem [Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

    2015-09-01

    Management and operation of dams within the Columbia River Basin (CRB) provides the region with irrigation, hydropower production, flood control, navigation, and fish passage. These various system-wide demands can require unique dam operations that may result in both voluntary and involuntary spill, thereby increasing tailrace levels of total dissolved gas (TDG) which can be fatal to fish. Appropriately managing TDG levels within the context of the systematic demands requires a predictive framework robust enough to capture the operationally related effects on TDG levels. Development of the TDG predictive methodology herein attempts to capture the different modes of hydro operation, thereby making it a viable tool to be used in conjunction with a real-time scheduling model such as RiverWare. The end result of the effort will allow hydro operators to minimize system-wide TDG while meeting hydropower operational targets and constraints. The physical parameters such as spill and hydropower flow proportions, accompanied by the characteristics of the dam such as plant head levels and tailrace depths, are used to develop the empirically-based prediction model. In the broader study, two different models are developed a simplified and comprehensive model. The latter model incorporates more specific bubble physics parameters for the prediction of tailrace TDG levels. The former model is presented herein and utilizes an empirically based approach to predict downstream TDG levels based on local saturation depth, spillway and powerhouse flow proportions, and entrainment effects. Representative data collected from each of the hydro projects is used to calibrate and validate model performance and the accuracy of predicted TDG uptake. ORNL, in conjunction with IIHR - Hydroscience & Engineering, The University of Iowa, carried out model adjustments to adequately capture TDG levels with respect to each plant while maintaining a generalized model configuration. Validation results

  16. Research and development of intelligent controller for high-grade sanitary ware

    Science.gov (United States)

    Bao, Kongjun; Shen, Qingping

    2013-03-01

    With the social and economic development and people's living standards improve, more and more emphasis on modern society, people improve the quality of family life, the use of intelligent controller applications in high-grade sanitary ware physiotherapy students. Analysis of high-grade sanitary ware physiotherapy common functions pointed out in the production and use of the possible risks, proposed implementation of the system hardware and matching, given the system software implementation process. High-grade sanitary ware physiotherapy intelligent controller not only to achieve elegant and beautiful, simple, physical therapy, water power, deodorant, multi-function, intelligent control, to meet the consumers, the high-end sanitary ware market, strong demand, Accelerate the enterprise product Upgrade and improve the competitiveness of enterprises.

  17. Ceramic ware waste as coarse aggregate for structural concrete production.

    Science.gov (United States)

    García-González, Julia; Rodríguez-Robles, Desirée; Juan-Valdés, Andrés; Morán-Del Pozo, Julia M; Guerra-Romero, M Ignacio

    2015-01-01

    The manufacture of any kind of product inevitably entails the production of waste. The quantity of waste generated by the ceramic industry, a very important sector in Spain, is between 5% and 8% of the final output and it is therefore necessary to find an effective waste recovery method. The aim of the study reported in the present article was to seek a sustainable means of managing waste from the ceramic industry through the incorporation of this type of waste in the total replacement of conventional aggregate (gravel) used in structural concrete. Having verified that the recycled ceramic aggregates met all the technical requirements imposed by current Spanish legislation, established in the Code on Structural Concrete (EHE-08), then it is prepared a control concrete mix and the recycled concrete mix using 100% recycled ceramic aggregate instead of coarse natural aggregate. The concretes obtained were subjected to the appropriate tests in order to conduct a comparison of their mechanical properties. The results show that the concretes made using ceramic sanitary ware aggregate possessed the same mechanical properties as those made with conventional aggregate. It is therefore possible to conclude that the reuse of recycled ceramic aggregate to produce recycled concrete is a feasible alternative for the sustainable management of this waste.

  18. Data Provenance and Trust

    Directory of Open Access Journals (Sweden)

    Stratis D Viglas

    2013-07-01

    Full Text Available The Oxford Dictionary defines provenance as “the place of origin, or earliest known history of something.” The term, when transferred to its digital counterpart, has morphed into a more general meaning. It is not only used to refer to the origin of a digital artefact but also to its changes over time. By changes in this context we may not only refer to its digital snapshots but also to the processes that caused and materialised the change. As an example, consider a database record r created at point in time t0; an update u to that record at time t1 causes it to have a value r’. In terms of provenance, we do not only want to record the snapshots (t0, r and (t1, r’ but also the transformation u that when applied to (t0, r results in (t1, r’, that is u(t0, r = (t1, r’.

  19. Impact of OpenCourseWare Publication on Higher Education Participation and Student Recruitment

    Directory of Open Access Journals (Sweden)

    Stephen Carson

    2012-10-01

    Full Text Available The free and open publication of course materials (OpenCourseWare or OCW was initially undertaken by Massachusetts Institute of Technology (MIT and other universities primarily to share educational resources among educators (Abelson, 2007. OCW, however, and more in general open educational resources (OER1, have also provided well-documented opportunities for all learners, including the so-called “informal learners” and “independent learners” (Carson, 2005; Mulder, 2006, p. 35. Universities have also increasingly documented clear benefits for specific target groups such as secondary education students and lifelong learners seeking to enter formal postsecondary education programs.In addition to benefitting learners, OCW publication has benefitted the publishing institutions themselves by providing recruiting advantages. Finally enrollment figures from some institutions indicate that even in the case of the free and open publication of materials from online programs, OCW does not negatively affect enrollment. This paper reviews evaluation conducted at Massachusetts Institute of Technology, Johns Hopkins Bloomberg School of Public Health (JHSPH, and Open Universiteit Nederland (OUNL concerning OCW effects on higher education participation and student recruitment.

  20. Provenance Store Evaluation

    Energy Technology Data Exchange (ETDEWEB)

    Paulson, Patrick R.; Gibson, Tara D.; Schuchardt, Karen L.; Stephan, Eric G.

    2008-03-01

    Requirements for the provenance store and access API are developed. Existing RDF stores and APIs are evaluated against the requirements and performance benchmarks. The team’s conclusion is to use MySQL as a database backend, with a possible move to Oracle in the near-term future. Both Jena and Sesame’s APIs will be supported, but new code will use the Jena API

  1. Chemical Composition by Neutron Activation Analysis (INAA of Neo-Assyrian Palace Ware from Iraq, Syria and Israel

    Directory of Open Access Journals (Sweden)

    Alice M W Hunt

    2013-05-01

    Full Text Available Neo-Assyrian Palace Ware is an 8th-7th century B.C.E. fine-ware which originated in Northern Mesopotamia and spread throughout the greater Levant. The mechanism by which Palace Ware moved across the Neo-Assyrian imperial landscape (trade or local imitation/emulation is of great archaeological interest. This dataset provides chemical compositional data, generated using instrumental neutron activation analysis (INAA, for Palace Ware vessels from Nimrud and Nineveh, in the Assyrian imperial core (Iraq, Dūr-Katlimmu, in one of the annexed provinces (Syria, and Tell Jemmeh, located outside the Neo-Assyrian provincial system (Israel.

  2. Aggregation by Provenance Types: A Technique for Summarising Provenance Graphs

    Directory of Open Access Journals (Sweden)

    Luc Moreau

    2015-04-01

    Full Text Available As users become confronted with a deluge of provenance data, dedicated techniques are required to make sense of this kind of information. We present Aggregation by Provenance Types, a provenance graph analysis that is capable of generating provenance graph summaries. It proceeds by converting provenance paths up to some length k to attributes, referred to as provenance types, and by grouping nodes that have the same provenance types. The summary also includes numeric values representing the frequency of nodes and edges in the original graph. A quantitative evaluation and a complexity analysis show that this technique is tractable; with small values of k, it can produce useful summaries and can help detect outliers. We illustrate how the generated summaries can further be used for conformance checking and visualization.

  3. Scenarios for the Use of OpenCourseWare in the Context of Student Mobility

    Directory of Open Access Journals (Sweden)

    Frederik Truyen

    2014-04-01

    Full Text Available In the context of a European OpenCourseWare project, funded by the EU Lifelong Learning Program, a handbook has been created with the purpose of showing how students and universities throughout Europe can get the most out of OpenCourseWare in order to become part of new learning communities and facilitate virtual exchange across borders. The main part of the handbook is the presentation of the Student Mobility Cycle that has been developed within the project and that defines five phases in the process of a student participating in Student Mobility. This article describes the five phases, each consisting of one or more scenarios that show the added value of OpenCourseWare in that particular phase.

  4. Provenance and fate of organic carbon in three submarine canyons from the Portuguese Margin: Implications for transport processes of material in continental margins

    Science.gov (United States)

    Kiriakoulakis, Kostas; Wolff, George; Blackbird, Sabena

    2010-05-01

    Submarine canyons are key environments on the continental margin that are affected by unique and dynamic but often episodic and complex processes, and are difficult to study. Canyons are considered hotspots of biodiversity and enhancement of primary productivity at canyon heads has often been postulated to support this, although the evidence is sparse. Additionally canyons are considered to be fast-track corridors for material transported from the land to the deep sea and they are considered major pathways for the transportation and burial of organic carbon, acting as buffers for sediment and carbon storage. Organic geochemical and isotopic markers are often used as reliable indicators for the supply, quality and fate of organic matter in marine systems. In this study they have been used to test the above hypotheses in three contrasting submarine canyons (Nazaré, Setubal/Lisbon and Cascais) of the Portuguese Margin. The elemental and lipid biomarker composition of suspended particulate organic matter of surface waters close to the studied canyon heads had a fresh phytoplankton signal, however there was no clear evidence for enhanced primary productivity by comparison to the neighbouring open slope. By contrast, mid-depth waters (700-1600 m), that are dominated by the northward flowing Mediterranean Outflow Water, had high lipid content and abundant mesozooplankton biomarkers, perhaps reflecting zooplankton activity focused at the boundaries of distinct water masses. In the waters close to the floor of the Nazaré Canyon the presence of elemental sulphur (a product of sediment diagenesis) and high molecular weight hydrocarbons (recalcitrant, terrestrial markers) indicated high levels of resuspended material, particularly at the Upper section (

  5. The Effect of the Flipped Classroom Approach to OpenCourseWare Instruction on Students' Self-Regulation

    Science.gov (United States)

    Sun, Jerry Chih-Yuan; Wu, Yu-Ting; Lee, Wei-I

    2017-01-01

    The purpose of this study was to investigate the effect of the flipped classroom approach to OpenCourseWare instruction on students' self-regulation. OpenCourseWare was integrated into the flipped classroom model (experimental group) and distance learning (control group). Overall, 181 freshmen taking a physics course were allowed to choose their…

  6. 76 FR 13602 - Porcelain-on-Steel Cooking Ware From the People's Republic of China: Continuation of Antidumping...

    Science.gov (United States)

    2011-03-14

    ... International Trade Administration Porcelain-on-Steel Cooking Ware From the People's Republic of China... revocation of the antidumping duty order on porcelain- on-steel cooking ware (``POS cookware'') from the... the ITC of the magnitude of the margins likely to prevail should the order be revoked. See Porcelain...

  7. Geochemical signatures of bedded cherts of the upper La Luna Formation in Táchira State, western Venezuela: Assessing material provenance and paleodepositional setting

    Science.gov (United States)

    Garbán, G.; Martínez, M.; Márquez, G.; Rey, O.; Escobar, M.; Esquinas, N.

    2017-01-01

    Here we undertook an inorganic geochemical study of Cenomanian-Campanian bedded cherts (the Táchira Ftanita Member of the La Luna Formation) in the western region of the Táchira State, Venezuela. The aim of this study was to determine the paleo-oceanographic and paleo-environmental conditions that governed the deposition of chert beds and put forward a sedimentation model for the Táchira Ftanita Member in the study area. Seventy-two chert samples were collected and trace/rare earth elements (La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, Lu, Rb, Cs, Th, U, Y, Co, and Sc) and major/trace elements (SiO2, TiO2, Al2O3, Fe2O3, MgO, CaO, Na2O, K2O, P2O5, Mn, Ba, Sr, Cr, Ni, and V) were determined by ICP-MS and ICP-OES, respectively. On the basis of the stratigraphic abundance and distribution of relatively immobile elements, as well as the distribution of rare earth elements, we established that the detrital sediments associated with the sequences studied have matching characteristics with distinct continental materials, with an intermediate composition, thus pointing to the Guayana Massif as the main source of sediments. In addition, we also determined the influence of hydrothermal input on the chemical composition of some cherts from La Molina Mine. On the basis of geochemistry, we found a biological influence regarding the uptake of dissolved silica for forming chert beds. The application of parameters for relatively immobile elements allowed us to establish a still proximal continental-margin (hemipelagic) for most samples from the Zorca River and a continental-margin for almost all the cherts from the Delicias-Villa Páez section and the remaining samples from La Molina Mine. Finally, we propose that the rhythmicity that accompanies the sequence of bedded cherts is related to changes in the intensity of upwelling patterns of water and/or to variability in the supply of silica dissolved in the Táchira sub-basin.

  8. Croissance et forme des provenances des pins tropicaux au Congo

    Directory of Open Access Journals (Sweden)

    Moutanda, A.

    1999-01-01

    Full Text Available Growth and Form of Provenances of Tropical Pines in Congo. In order to select the necessary vegetal material for the afforestation, provenances of central America, australian and the Caribbean Sea Pinus caribaea Morelet were compared from two randomised complete block design trials. Significant differences were observed between provenances according to some quantitative characters (survival rate, height and girth growth and form (thinness branches, pitchfork frequency, ... 9 and 18 years after planting. It was proposed to re-introduce provenances or the best descendants from the best provenances in order to improve genetic variety. Silvicultural systems are also necessary to improve both wood quality and stand productivity.

  9. 75 FR 62144 - Porcelain-on-Steel Cooking Ware From China and Taiwan; Top-of-the-Stove Stainless Steel Cooking...

    Science.gov (United States)

    2010-10-07

    ...-304 (Third Review))] Porcelain-on-Steel Cooking Ware From China and Taiwan; Top-of- the-Stove Stainless Steel Cooking Ware From Korea AGENCY: United States International Trade Commission. ACTION: Institution of five-year reviews concerning the antidumping duty orders on porcelain-on-steel cooking ware...

  10. Information Provenance in Social Media

    Science.gov (United States)

    Barbier, Geoffrey; Liu, Huan

    Information appearing in social media provides a challenge for determining the provenance of the information. However, the same characteristics that make the social media environment challenging provide unique and untapped opportunities for solving the information provenance problem for social media. Current approaches for tracking provenance information do not scale for social media and consequently there is a gap in provenance methodologies and technologies providing exciting research opportunities for computer scientists and sociologists. This paper introduces a theoretical approach aimed guiding future efforts to realize a provenance capability for social media that is not available today. The guiding vision is the use of social media information itself to realize a useful amount provenance data for information in social media.

  11. Soft ware upgrade for Mobile Laboratories in Estonia, Latvia and Lithuania

    DEFF Research Database (Denmark)

    Bargholz, Kim; Andersen, Frank

    1998-01-01

    In July-August 1998 the soft ware for controlling the measurements in the mobile laboratories have been upgraded. The mobile laboratories are sponsored by Danish east aid projects in cooperation with Rotaray Denmark.The equipment used is 4 L NaI(Tl) detectors mounted on the roof of the cars toget...

  12. OpenCourseWare, Global Access and the Right to Education: Real Access or Marketing Ploy?

    Science.gov (United States)

    Huijser, Henk; Bedford, Tas; Bull, David

    2008-01-01

    This paper explores the potential opportunities that OpenCourseWare (OCW) offers in providing wider access to tertiary education, based on the ideal of "the right to education." It first discusses the wider implications of OCW, and its underlying philosophy, before using a case study of a tertiary preparation program (TPP) at the…

  13. DISTRIBUTION OF CORDED WARE IN THE AREAS NORTH OF THE GULF OF FINLAND – AN UPDATE

    National Research Council Canada - National Science Library

    Nordqvist, Kerkko; Häkälä, Piritta

    2014-01-01

    ... north of the Gulf of Finland accommodate a large amount of settlement sites but only a few burials. No singular reason for this can be pointed out but the most likely explanations include modest later land use at the locations, factors related to archaeological visibility and research methods, and also to local Corded Ware cultural practices. Desp...

  14. Fine bakery wares with label claims in Europe and their categorisation by nutrient profiling models.

    Science.gov (United States)

    Trichterborn, J; Harzer, G; Kunz, C

    2011-03-01

    This study assesses a range of commercially available fine bakery wares with nutrition or health related on-pack communication against the criteria of selected nutrient profiling models. Different purposes of the application of nutrient profiles were considered, including front-of-pack signposting and the regulation of claims or advertising. More than 200 commercially available fine bakery wares carrying claims were identified in Germany, France, Spain, Sweden and United Kingdom and evaluated against five nutrient profiling models. All models were assessed regarding their underlying principles, generated results and inter-model agreement levels. Total energy, saturated fatty acids, sugars, sodium and fibre were critical parameters for the categorisation of products. The Choices Programme was the most restrictive model in this category, while the Food and Drug Administration model allowed the highest number of products to qualify. According to all models, more savoury than sweet products met the criteria. On average, qualifying products contained less than half the amounts of nutrients to limit and more than double the amount of fibre compared with all the products in the study. None of the models had a significant impact on the average energy contents. Nutrient profiles can be applied to identify fine bakery wares with a significantly better nutritional composition than the average range of products positioned as healthier. Important parameters to take into account include energy, saturated fatty acids, sugars, sodium and fibre. Different criteria sets for subcategories of fine bakery wares do not seem necessary.

  15. Business plan Locally produced and branded ware potato, Zambezi Valley, Mozambique

    NARCIS (Netherlands)

    Haverkort, A.J.; Saavedra Gonzalez, Y.R.

    2015-01-01

    This business plan has been prepared for local entrepreneurs who would like to expand their business portfolio or to start an agricultural value chain business in the potato sector in the region of Tete. The four-year business plan intends to create a locally produced and branded ware potato value

  16. Phase and Micro-Structural Characterization of Sanitary-Ware Fired at Different Temperature

    Directory of Open Access Journals (Sweden)

    ATHER HASSAN

    2017-07-01

    Full Text Available The three main ingredients of sanitary-ware are clay, feldspar and quartz. This ware is being widely used and has therefore, attracted the attention of researchers from time to time. Consequently, it has been extensively investigated. The present study describes the phase and micro-structural analysis of sanitary-ware samples collected from local (Durr Ceramics Peshawar industry. XRD (X-Ray Diffraction of samples fired at 1100oC reveals the presence of ? ? ? ? ?-quartz and primary mullite only. In addition to a-quartz and primary mullite, elongated needles of secondary mullite were also present in samples fired at 1200 and 1300oC. Unlike typical vitreous ceramics bodies, regions containing elongated secondary mullite originating from the clay relict and growing into the feldspar relict were few in number which is consistent with the high clay content in the starting body ingredients of the investigated samples. Another sample investigated for comparison purposes, contained all the phases mentioned above along with some corundum grains which indicated that the composition of sanitary ware varied from manufacturer to manufacturer. EDS (Energy Dispersive Spectroscopy detected high concentration of Fe in some regions in the bulk but the glaze did not contain any Fe.

  17. Stone material of regional provenance from Sirmium

    Directory of Open Access Journals (Sweden)

    Rižnar Igor

    2006-01-01

    Full Text Available The stone artefacts from Sirmium, held at the Museum of Srem, were sampled and analyzed in order to establish an archaeological database connected with Roman quarries and possible transport routes along the Sava and Danube Rivers. Of the artefacts made of Neogene limestone three lithotypes were identified. Two of them were determined as originating from the known Roman quarry in the Drina Valley (NE Bosnia. For the third lithotype and its subtypes a model of the hypothetical quarry is proposed, the location of which is suggested to be outside the Drina river basin. Beside limestone, the sampled artefacts also revealed two types of porous volcanoclastic rocks of andesitic composition, which supposedly originate from two different microlocations in the Drina river basin.

  18. From Scripts Towards Provenance Inference

    NARCIS (Netherlands)

    Huq, M.R.; Apers, Peter M.G.; Wada, Y.; van Beek, L.P.H.; Wombacher, Andreas

    2012-01-01

    Scientists require provenance information either to validate their model or to investigate the origin of an unexpected value. However, they do not maintain any provenance information and even designing the processing workflow is rare in practice. Therefore, in this paper, we propose a solution that

  19. 75 FR 81967 - Porcelain-on-Steel Cooking Ware From Taiwan: Final Results of Sunset Review and Revocation of...

    Science.gov (United States)

    2010-12-29

    ...-Steel Cooking Ware From China, Mexico, and Taiwan, 65 FR 20136 (April 14, 2000); Porcelain-on-Steel...: December 21, 2010. Christian Marsh, Acting Deputy Assistant Secretary for Import Administration. [FR Doc...

  20. Understanding the Self-Directed Online Learning Preferences, Goals, Achievements, and Challenges of MIT OpenCourseWare Subscribers

    National Research Council Canada - National Science Library

    Curtis J Bonk; Mimi Miyoung Lee; Xiaojing Kou; Shuya Xu; Feng-Ru Sheu

    2015-01-01

      This research targeted the learning preferences, goals and motivations, achievements, challenges, and possibilities for life change of self-directed online learners who subscribed to the monthly OpenCourseWare (OCW...

  1. Estrogenic impurities in tissue culture plastic ware are not bisphenol A.

    Science.gov (United States)

    Biswanger, Caroline; Davis, Laura; Roberts, Rebecca A

    2006-01-01

    Control of the cellular environment is a principal attribute of in vitro cell cultures. Unintentional exposure to environmental compounds can adversely affect cultures and, therefore, experimental results. Estrogenic compounds arising from common plastic ware have been found during cell culture. One such compound, the environmental endocrine disrupting chemical bisphenol A, can bind to estrogen receptors and effect cellular changes. We monitored bisphenol A concentrations in culture dishes from six different manufacturers under typical cell-culture conditions. With the use of a gas chromatography mass-spectrometry assay we determined that bisphenol A contamination from the culture dishes did not occur. These findings will allow scientists concerned about possible effects of bisphenol A on their culture systems to choose appropriate plastic ware.

  2. MRI findings in proven Mycobacterium tuberculosis (TB) spondylitis ...

    African Journals Online (AJOL)

    MRI features of proven TB spondylitis in our setting is needed. Materials and methods. Histologically proven cases of TB spondylitis, with MR imaging performed at Universitas Hospital on a 1.5T scanner, were reviewed. Results. Typical findings of vertebral column involvement were seen in all patients, namely multiple ...

  3. Advantages and disadvantages of using intravenous tissue Plasminogen activator as salvage therapy for inoperable HeartWare thrombosis.

    Science.gov (United States)

    Basken, Robyn; Bazzell, Charles M; Smith, Richard; Janardhanan, Rajesh; Khalpey, Zain

    2017-07-01

    Device thrombosis is a devastating complication of left ventricular assist devices. The definitive treatment has been device exchange or explant. Evidence of increasing morbidity and mortality with device exchange has shifted strategies toward conservative management. In this report, we detail the use of thrombolytics as salvage therapy in a patient with an occlusive HeartWare ventricular assist device (HeartWare Inc., Framingham, MA) thrombus, resulting in long-term survival without further intervention. © 2017 Wiley Periodicals, Inc.

  4. Mineralogy and microstructure of hydrated phases during the pozzolanic reaction in the sanitary ware waste/Ca(OH)2 system

    OpenAIRE

    Medina, César; Sáez del Bosque, Isabel F.; Asensio, Eloy; Frías, Moisés; Sánchez de Rojas, M. Isabel

    2016-01-01

    Despite technological improvements in its production process, the sanitary ware industry inevitably generates a certain volume of discards, products whose quality is not up to standard. The present paper is the first to scientifically explore claybased sanitary ware waste (SW) with a view to its valorization as an addition in the design of new, more environmentally friendly cements. The focus is on characterization of the waste and its pozzolanicity, as well as the struct...

  5. KnoWare: A System for Citizen-based Environmental Monitoring

    Directory of Open Access Journals (Sweden)

    Joseph T. Chao

    2016-05-01

    Full Text Available Non-expert scientists are frequently involved in research requiring data acquisition over large geographic areas. Despite mutual benefits for such “citizen science”, barriers also exist, including 1 difficulty maintaining user engagement with timely feedback, and 2 the challenge of providing non-experts with the means to generate reliable data. We have developed a system that addresses these barriers. Our technologies, KnoWare and InSpector, allow users to: collect reliable scientific measurements, map geo-tagged data, and intuitively visualize the results in real-time. KnoWare comprises a web portal and an iOS app with two core functions. First, users can generate scientific ‘queries’ that entail a call for information posed to a crowd with customized options for participant responses and viewing data. Second, users can respond to queries with their GPS-enabled mobile device, which results in their geo- and time-stamped responses populating a web-accessible map in real time. KnoWare can also interface with additional applications to diversify the types of data that can be reported. We demonstrate this capability with a second iOS app called InSpector that performs quantitative water quality measurements. When used in combina-tion, these technologies create a workflow to facilitate the collection, sharing and interpretation of scientific data by non-expert scientists.

  6. Provenance an introduction to PROV

    CERN Document Server

    Moreau, Luc

    2013-01-01

    The World Wide Web is now deeply intertwined with our lives, and has become a catalyst for a data deluge, making vast amounts of data available online, at a click of a button. With Web 2.0, users are no longer passive consumers, but active publishers and curators of data. Hence, from science to food manufacturing, from data journalism to personal well-being, from social media to art, there is a strong interest in provenance, a description of what influenced an artifact, a data set, a document, a blog, or any resource on the Web and beyond. Provenance is a crucial piece of information that can

  7. SeqWare Query Engine: storing and searching sequence data in the cloud.

    Science.gov (United States)

    O'Connor, Brian D; Merriman, Barry; Nelson, Stanley F

    2010-12-21

    Since the introduction of next-generation DNA sequencers the rapid increase in sequencer throughput, and associated drop in costs, has resulted in more than a dozen human genomes being resequenced over the last few years. These efforts are merely a prelude for a future in which genome resequencing will be commonplace for both biomedical research and clinical applications. The dramatic increase in sequencer output strains all facets of computational infrastructure, especially databases and query interfaces. The advent of cloud computing, and a variety of powerful tools designed to process petascale datasets, provide a compelling solution to these ever increasing demands. In this work, we present the SeqWare Query Engine which has been created using modern cloud computing technologies and designed to support databasing information from thousands of genomes. Our backend implementation was built using the highly scalable, NoSQL HBase database from the Hadoop project. We also created a web-based frontend that provides both a programmatic and interactive query interface and integrates with widely used genome browsers and tools. Using the query engine, users can load and query variants (SNVs, indels, translocations, etc) with a rich level of annotations including coverage and functional consequences. As a proof of concept we loaded several whole genome datasets including the U87MG cell line. We also used a glioblastoma multiforme tumor/normal pair to both profile performance and provide an example of using the Hadoop MapReduce framework within the query engine. This software is open source and freely available from the SeqWare project (http://seqware.sourceforge.net). The SeqWare Query Engine provided an easy way to make the U87MG genome accessible to programmers and non-programmers alike. This enabled a faster and more open exploration of results, quicker tuning of parameters for heuristic variant calling filters, and a common data interface to simplify development of

  8. Provenance management in Swift with implementation details.

    Energy Technology Data Exchange (ETDEWEB)

    Gadelha, L. M. R; Clifford, B.; Mattoso, M.; Wilde, M.; Foster, I. (Mathematics and Computer Science); ( CLS-CI); (Federal Univ. of Rio de Janeiro); (National Lab. for Scientific Computing, Brazil); (Univ. of Chicago)

    2011-04-01

    The Swift parallel scripting language allows for the specification, execution and analysis of large-scale computations in parallel and distributed environments. It incorporates a data model for recording and querying provenance information. In this article we describe these capabilities and evaluate interoperability with other systems through the use of the Open Provenance Model. We describe Swift's provenance data model and compare it to the Open Provenance Model. We also describe and evaluate activities performed within the Third Provenance Challenge, which consisted of implementing a specific scientific workflow, capturing and recording provenance information of its execution, performing provenance queries, and exchanging provenance information with other systems. Finally, we propose improvements to both the Open Provenance Model and Swift's provenance system.

  9. Logical provenance in data-oriented workflows?

    KAUST Repository

    Ikeda, R.

    2013-04-01

    We consider the problem of defining, generating, and tracing provenance in data-oriented workflows, in which input data sets are processed by a graph of transformations to produce output results. We first give a new general definition of provenance for general transformations, introducing the notions of correctness, precision, and minimality. We then determine when properties such as correctness and minimality carry over from the individual transformations\\' provenance to the workflow provenance. We describe a simple logical-provenance specification language consisting of attribute mappings and filters. We provide an algorithm for provenance tracing in workflows where logical provenance for each transformation is specified using our language. We consider logical provenance in the relational setting, observing that for a class of Select-Project-Join (SPJ) transformations, logical provenance specifications encode minimal provenance. We have built a prototype system supporting the features and algorithms presented in the paper, and we report a few preliminary experimental results. © 2013 IEEE.

  10. The Funeral Ware from Tikhvinsky Necropolis in Tsarevokokshaisk City: Preliminary Study Results

    Directory of Open Access Journals (Sweden)

    Vorobeva Elena E.

    2013-06-01

    Full Text Available The article is devoted to the results of conservation excavations of the Tikhvinsky necropolis, located in the territory of Yoshkar-Ola (former Tsarevokokshaisk city, the Mari El Republic. The site dates from the late 17th to the early 20th century. In the course of the excavations, 781 burials have been studied. The majority of the burials had been executed in the Orthodox rite, containing a considerable number of Christian religion objects: baptismal crosses, medallions, and small icons. However, in many graves, objects indicating the presence of remnants of paganism in the funeral rite have been discovered. Among these, it is necessary to note the presence of the funeral ware – all in all 65 glass and ceramic vessels, almost half of them broken or damaged, which reflects the ancient ritual of "spoiling things". The classification of the funeral ware according to typological and technological features is offered. This category of grave goods is of great interest for the study of the funerary culture and everyday life of the population that inhabited Tsarevokokshaisk in the late 18th – early 20th centuries.

  11. High quality voice synthesis middle ware; Kohinshitsu onsei gosei middle war

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2000-03-01

    Toshiba Corp. newly developed a natural voice synthesis system, TOS Drive TTS (TOtally speaker Driven Text-To-Speech) system, in which natural high-quality read-aloud is greatly improved, and also developed as its application a voice synthesis middle ware. In the newly developed system, using as a model a narrator's voice recorded preliminarily, a metrical control dictionary is automatically learned that reproduces the characteristics of metrical patters such as intonation or rhythm of a human voice, as is a voice bases dictionary that reproduces the characteristics of a voice quality, enabling natural voice synthesis to be realized that picks up human voice characteristics. The system is high quality and also very compact, while the voice synthesis middle ware utilizing this technology is adaptable to various platforms such as MPU or OS. The system is very suitable for audio response in the ITS field having car navigation systems as the core; besides, expanded application is expected to an audio response system that used to employ a sound recording and reproducing system. (translated by NEDO)

  12. Provenance as First Class Cloud Data

    OpenAIRE

    Muniswamy-Reddy, Kiran-Kumar; Seltzer, Margo I.

    2010-01-01

    Digital provenance is meta-data that describes the ancestry or history of a digital object. Most work on provenance focuses on how provenance increases the value of data to consumers. However, provenance is also valuable to storage providers. For example, provenance can provide hints on access patterns, detect anomalous behavior, and provide enhanced user search capabilities. As the next generation storage providers, cloud vendors are in the unique position to capitalize on this opportunity t...

  13. Provenance data in social media

    CERN Document Server

    Barbier, Geoffrey; Gundecha, Pritam

    2013-01-01

    Social media shatters the barrier to communicate anytime anywhere for people of all walks of life. The publicly available, virtually free information in social media poses a new challenge to consumers who have to discern whether a piece of information published in social media is reliable. For example, it can be difficult to understand the motivations behind a statement passed from one user to another, without knowing the person who originated the message. Additionally, false information can be propagated through social media, resulting in embarrassment or irreversible damages. Provenance data

  14. Ontology-Driven Provenance Management in eScience: An Application in Parasite Research

    Science.gov (United States)

    Sahoo, Satya S.; Weatherly, D. Brent; Mutharaju, Raghava; Anantharam, Pramod; Sheth, Amit; Tarleton, Rick L.

    Provenance, from the French word "provenir", describes the lineage or history of a data entity. Provenance is critical information in scientific applications to verify experiment process, validate data quality and associate trust values with scientific results. Current industrial scale eScience projects require an end-to-end provenance management infrastructure. This infrastructure needs to be underpinned by formal semantics to enable analysis of large scale provenance information by software applications. Further, effective analysis of provenance information requires well-defined query mechanisms to support complex queries over large datasets. This paper introduces an ontology-driven provenance management infrastructure for biology experiment data, as part of the Semantic Problem Solving Environment (SPSE) for Trypanosoma cruzi (T.cruzi). This provenance infrastructure, called T.cruzi Provenance Management System (PMS), is underpinned by (a) a domain-specific provenance ontology called Parasite Experiment ontology, (b) specialized query operators for provenance analysis, and (c) a provenance query engine. The query engine uses a novel optimization technique based on materialized views called materialized provenance views (MPV) to scale with increasing data size and query complexity. This comprehensive ontology-driven provenance infrastructure not only allows effective tracking and management of ongoing experiments in the Tarleton Research Group at the Center for Tropical and Emerging Global Diseases (CTEGD), but also enables researchers to retrieve the complete provenance information of scientific results for publication in literature.

  15. Llums i ombres de l’Open Course Ware: envers l’OCW 2.0

    Directory of Open Access Journals (Sweden)

    Rosanna Mestre

    2009-12-01

    Full Text Available El Open Course Ware es una altruista iniciativa orientada a la educación superior que aporta beneficios tanto a estudiantes y profesores, como a las instituciones que la promueven. Pero también tiene ciertas limitaciones que podrían ser paliadas parcialmente si sus gestores miraran al futuro desde una perspectiva más ambiciosa con el fin de garantizar no sólo repositorios abiertos, sino también apoyo pedagógico y reconocimiento de títulos. Exigiría soluciones imaginativas y comprometidas para algunas cuestiones clave pero podría convertirse en una respuesta accesible para la inminente demanda global de formación universitaria. Las bases de esta especie de OCW 2.0 ya están construidas.Open Course Ware is an altruistic initiative for higher education that has benefits for both students and professors, and institutions that promote it. But it also has certain limitations that might be diminished partly if decision makers looked at the future from a more ambitious perspective in order to guarantee not only open repositories, but also teaching assessment and degreegranting. It would require imaginative and engaged solutions to some key issues, but it could be a reasonable answer for the impending worldwide demand for higher education. The bases for this sort of OCW 2.0 are built already.L’Open Course Ware és una altruista iniciativa orientada a l’educació superior que aporta beneficis tant a estudiants i professors, com a les institucions que la promouen. Però també té certes limitacions que podrien ser pal·liades parcialment si els seus gestors miraren al futur des d’una perspectiva més ambiciosa per tal de garantir no sols repositoris oberts, sinó també suport pedagògic i reconeixement de títols. Exigiria solucions imaginatives i compromeses per a algunes qu?estions clau, però podria esdevenir una resposta accessible per a la imminent demanda global de formació universitària. Les bases d’aquesta mena d

  16. Challenges in the Adoption and Use of OpenCourseWare: Experience of the United Nations University

    Science.gov (United States)

    Barrett, Brendan F. D.; Grover, Velma I.; Janowski, Tomasz; van Lavieren, Hanneke; Ojo, Adegboyega; Schmidt, Philipp

    2009-01-01

    This paper provides insights on the adoption or use of OpenCourseWare (OCW) to support broader research, training and institutional capacity development goals, based on the experience of the United Nations University. Specifically, it explains the strategic context for the use of OCW in the university through its related efforts in the area of…

  17. The influence of the large scale mechanization of ware potato growing upon supply responsiveness in The Netherlands (1955–1978)

    NARCIS (Netherlands)

    F.A.J. van den Bosch (Frans); C.P. Veerman (Cees)

    1980-01-01

    textabstractThis article brings together the findings of an investigation into the influence of large scale mechanization on the supply response of ware potatoes in The Netherlands (1955–1978). For this purpose the considered period has been divided into two sub-periods: the period before the

  18. 77 FR 60119 - Proposed Consent Agreements: DesignerWare, LLC, Timothy Kelly and Ronald P. Koller, Aspen Way...

    Science.gov (United States)

    2012-10-02

    ...://www.ftc.gov to read this Notice and the news release describing it. The FTC Act and other laws that... Detective Mode to send fake ``software registration'' forms to consumers to deceive them into providing their contact and location information. DesignerWare created several different fake registration forms...

  19. Arrowheads as indicators of interpersonal violence and group identity among the Neolithic Pitted Ware hunters of southwestern Scandinavia

    DEFF Research Database (Denmark)

    Iversen, Rune

    2016-01-01

    millennium BC. Based on a study of more than 1500 arrowheads from Denmark and western Sweden, this paper explains the stylistic variation of the Pitted Ware arrowheads as functional determined representing two main categories: relatively short and wide hunting arrowheads (type A) and long and slender war...

  20. Vis-A-Ware: Integrating Spatial and Non-Spatial Visualization for Visibility-Aware Urban Planning.

    Science.gov (United States)

    Ortner, Thomas; Sorger, Johannes; Steinlechner, Harald; Hesina, Gerd; Piringer, Harald; Groller, Eduard

    2017-02-01

    3D visibility analysis plays a key role in urban planning for assessing the visual impact of proposed buildings on the cityscape. A call for proposals typically yields around 30 candidate buildings that need to be evaluated with respect to selected viewpoints. Current visibility analysis methods are very time-consuming and limited to a small number of viewpoints. Further, analysts neither have measures to evaluate candidates quantitatively, nor to compare them efficiently. The primary contribution of this work is the design study of Vis-A-Ware, a visualization system to qualitatively and quantitatively evaluate, rank, and compare visibility data of candidate buildings with respect to a large number of viewpoints. Vis-A-Ware features a 3D spatial view of an urban scene and non-spatial views of data derived from visibility evaluations, which are tightly integrated by linked interaction. To enable a quantitative evaluation we developed four metrics in accordance with experts from urban planning. We illustrate the applicability of Vis-A-Ware on the basis of a use case scenario and present results from informal feedback sessions with domain experts from urban planning and development. This feedback suggests that Vis-A-Ware is a valuable tool for visibility analysis allowing analysts to answer complex questions more efficiently and objectively.

  1. 76 FR 7534 - Porcelain-on-Steel Cooking Ware from the People's Republic of China: Final Results of the...

    Science.gov (United States)

    2011-02-10

    ... International Trade Administration Porcelain-on-Steel Cooking Ware from the People's Republic of China: Final... Commerce (``Department'') initiated a sunset review of the antidumping duty order on porcelain-on-steel... FR 60731 (October 1, 2010) (``Sunset Initiation''); see also Antidumping Duty Order; Porcelain-on...

  2. 78 FR 10172 - Lisa Anne Cornell and G. Ware Cornell, Jr. v. Princess Cruise Lines, Ltd. (Corp), Carnival PLC...

    Science.gov (United States)

    2013-02-13

    ... Lisa Anne Cornell and G. Ware Cornell, Jr. v. Princess Cruise Lines, Ltd. (Corp), Carnival PLC, and..., Jr., hereinafter ``Complainants,'' against Princess Cruise Lines, Ltd (Corp), Carnival plc, and... common carrier for hire of passengers from ports in the United States;'' Respondent Carnival plc ``is a...

  3. 75 FR 11991 - ABC & D Recycling, Inc.-Lease and Operation Exemption-a Line of Railroad in Ware, MA

    Science.gov (United States)

    2010-03-12

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF TRANSPORTATION Surface Transportation Board ABC & D Recycling, Inc.--Lease and Operation Exemption--a Line of Railroad in Ware, MA ABC & D Recycling, Inc. (ABC & D), a noncarrier, has filed a verified notice of exemption...

  4. 75 FR 49549 - ABC & D Recycling, Inc.-Lease and Operation Exemption-a Line of Railroad in Ware, MA

    Science.gov (United States)

    2010-08-13

    ... Surface Transportation Board ABC & D Recycling, Inc.--Lease and Operation Exemption--a Line of Railroad in Ware, MA ABC & D Recycling, Inc. (ABC & D), a noncarrier, has filed a verified notice of exemption... operation of this trackage in FD 35356, ABC & D Recycling, Inc.--Lease and Operation Exemption--a Line of...

  5. The new inter process communication middle-ware for the ATLAS Trigger and Data Acquisition system

    CERN Document Server

    Kolos, Serguei; The ATLAS collaboration

    2016-01-01

    The ATLAS Trigger & Data Acquisition (TDAQ) project was started almost twenty years ago with the aim of providing scalable distributed data collection system for the experiment. While the software dealing with physics data flow was implemented by directly using the low-level communication protocols, like TCP and UDP, the control and monitoring infrastructure services for the TDAQ system were implemented on top of the CORBA communication middle-ware. CORBA provides a high-level object oriented abstraction for the inter process communication, hiding communication complexity from the developers. This approach speeds up and simplifies development of communication services but incurs some extra cost in terms of performance and resources overhead. Our experience of using CORBA for control and monitoring data exchange in the distributed TDAQ system was very successful, mostly due to the outstanding quality of the CORBA brokers, which have been used in the project: omniORB for C++ and JacORB for Java. However, du...

  6. Digital provenance - models, systems, and applications

    OpenAIRE

    Sultana, Salmin

    2014-01-01

    Data provenance refers to the history of creation and manipulation of a data object and is being widely used in various application domains including scientific experiments, grid computing, file and storage system, streaming data etc. However, existing provenance systems operate at a single layer of abstraction (workflow/process/OS) at which they record and store provenance whereas the provenance captured from different layers provide the highest benefit when integrated through a unified prov...

  7. Star Ware: The Amateur Astronomer's Guide to Choosing, Buying, and Using Telescopes and Accessories, 3rd Edition

    Science.gov (United States)

    Harrington, Philip S.

    2002-05-01

    Praise for the Second Edition of Star Ware "Star Ware is still a tour de force that any experienced amateur will find invaluable, and which hardware-minded beginners will thoroughly enjoy." -Robert Burnham, Sky & Telescope magazine "Star Ware condenses between two covers what would normally take a telescope buyer many months to accumulate." -John Shibley, Astronomy magazine Now more than ever, the backyard astronomer has a dazzling array of choices when it comes to telescope shopping-which can make choosing just the right sky-watching equipment a formidable challenge. In this revised and updated edition of Star Ware, the essential guide to buying astronomical equipment, award-winning astronomy writer Philip Harrington does the work for you, analyzing and exploring today's astronomy market and offering point-by-point comparisons of everything you need. Whether you're an experienced amateur astronomer or just getting started, Star Ware, Third Edition will prepare you to explore the farthest reaches of space with: Extensive, expanded reviews of leading models and accessories, including dozens of new products, to help you buy smart A clear, step-by-step guide to all aspects of purchasing everything from telescopes and binoculars to filters, mounts, lenses, cameras, film, star charts, guides and references, and much more Eleven new do-it-yourself projects for making unique astronomical equipment at home Easy tips on maintenance, photography, and star-mapping to help you get the most out of your telescope Lists of where to find everything astronomical, including Internet sites and Web resources; distributors, dealers, and conventions; and corporate listings for products and services

  8. Understanding collaborative studies through interoperable workflow provenance

    NARCIS (Netherlands)

    Altintas, I.; Anand, M.K.; Crawl, D.; Bowers, S.; Belloum, A.; Missier, P.; Ludäscher, B.; Goble, C.A.; Sloot, P.M.A.

    2010-01-01

    The provenance of a data product contains information about how the product was derived, and is crucial for enabling scientists to easily understand, reproduce, and verify scientific results. Currently, most provenance models are designed to capture the provenance related to a single run, and mostly

  9. PROX: Approximated Summarization of Data Provenance.

    Science.gov (United States)

    Ainy, Eleanor; Bourhis, Pierre; Davidson, Susan B; Deutch, Daniel; Milo, Tova

    2016-03-01

    Many modern applications involve collecting large amounts of data from multiple sources, and then aggregating and manipulating it in intricate ways. The complexity of such applications, combined with the size of the collected data, makes it difficult to understand the application logic and how information was derived. Data provenance has been proven helpful in this respect in different contexts; however, maintaining and presenting the full and exact provenance may be infeasible, due to its size and complex structure. For that reason, we introduce the notion of approximated summarized provenance, where we seek a compact representation of the provenance at the possible cost of information loss. Based on this notion, we have developed PROX, a system for the management, presentation and use of data provenance for complex applications. We propose to demonstrate PROX in the context of a movies rating crowd-sourcing system, letting participants view provenance summarization and use it to gain insights on the application and its underlying data.

  10. Provenance of Apollo 12 KREEP.

    Science.gov (United States)

    Wasson, J. T.; Baedecker, P. A.

    1972-01-01

    Possible origins of KREEP in Apollo 12 lunar samples are evaluated in terms of their probabilities. Preference is given to the assumption that the KREEP may be a mixture of roughly equal proportions of (1) ejecta from Copernicus, (2) ejecta from Reinhold, (3) ejecta from local highlands, and (4) material excavated from Fra Mauro deposits buried below the landing site.

  11. Distinguishing Provenance Equivalence of Earth Science Data

    Science.gov (United States)

    Tilmes, Curt; Yesha, Ye; Halem, M.

    2010-01-01

    Reproducibility of scientific research relies on accurate and precise citation of data and the provenance of that data. Earth science data are often the result of applying complex data transformation and analysis workflows to vast quantities of data. Provenance information of data processing is used for a variety of purposes, including understanding the process and auditing as well as reproducibility. Certain provenance information is essential for producing scientifically equivalent data. Capturing and representing that provenance information and assigning identifiers suitable for precisely distinguishing data granules and datasets is needed for accurate comparisons. This paper discusses scientific equivalence and essential provenance for scientific reproducibility. We use the example of an operational earth science data processing system to illustrate the application of the technique of cascading digital signatures or hash chains to precisely identify sets of granules and as provenance equivalence identifiers to distinguish data made in an an equivalent manner.

  12. Leveraging Data Provenance to Enhance Cyber Resilience

    Science.gov (United States)

    2016-11-01

    using data provenance. Data provenance is the history of ownership/processing or modification that we can use to guide its authenticity. Provenance...ProvToolbox [24], a library that presents an implementation of the W3C PROV specification for Java ap- plications. In addition to using these libraries...database 12c. O’Reilly Media, Inc., 2013. [15] R. Hasan, R. Sion, and M. Winslett. The Case of the Fake Picasso: Preventing History Forgery with Secure

  13. Analysis of late mid-Neolithic pottery illuminates the presenceof a Corded Ware Culture on the Baltic Island of Gotland

    Directory of Open Access Journals (Sweden)

    Erik Palmgren

    2015-12-01

    Full Text Available In this paper, we discuss variations seen in the ornamentation and modes of manufacturing pottery from the end of the mid-Neolithic 4600–4300 BP on the Island of Gotland in the Baltic Sea. The Pitted Ware cultural groups have been discussed as a western influence from the Swedish mainland, but the aDNA on skeletal remains point to eastern influences. We analyse and discuss pottery from the well-investigated Ajvide Pitted Ware site and what these variations mean in term of intra- and inter-island relationships, ethnicity and change, and we suggest the development of what could be described as a hybrid culture.

  14. Discussion Problems Related to the Study of Pit-Comb Ware Sites in the Middle Volga Region

    Directory of Open Access Journals (Sweden)

    Stavitsky Vladimir V.

    2013-03-01

    Full Text Available A number of issues concerning the origin and chronology of the Neolithic Pit-Сomb Ware culture monuments, as well as their correlation with those referring to other cultures are tackled in the article. The spread of pit-combed pottery bearers as a result of their eastward migration from the territory of the Volga-Oka river interfluve seems most likely. Still, the problem of correspondence between radiocarbon dating and stratigraphy data from the Neolithic sites located in the Volga region has not lost actuality. The results of radiocarbon dating show that in the middle reaches of the Sura river pit-comb ware cultures had preceded the combed pottery sites, which requires a revision of the issues of their synchronization based on typological data. In the forest-steppe zone, the sequence of ceramic traditions development could probably differ from that prevalent in the territories located further north

  15. The impact of male burials on the construction of Corded Ware identity: Reconstructing networks of information in the 3rd millennium BC.

    Science.gov (United States)

    Bourgeois, Quentin; Kroon, Erik

    2017-01-01

    The emergence of Corded Ware Groups throughout Europe in the 3rd millennium BC is one of the most defining events in European history. From the Wolga to the Rhine communities start to speak Indo-European languages and bury their dead in an extremely similar fashion. Recent ancient DNA-analyses identify a massive migration from the Eurasian steppe as the prime cause for this event. However, there is a fundamental difference between expressing a Corded Ware identity-the sharing of world views and ideas-and having a specific DNA-profile. Therefore, we argue that investigating the exchange of cultural information on burial rites between these communities serves as a crucial complement to the exchange of biological information. By adopting a practice perspective to 1161 Corded Ware burials throughout north-western Europe, combined with similarity indexes and network representations, we demonstrate a high degree of information sharing on the burial ritual between different regions. Moreover, we show that male burials are much more international in character than female burials and as such can be considered as the vector along which cultural information and Corded Ware identity was transmitted. This finding highlights an underlying complex societal organization of Corded Ware burial rites in which gender roles had a significant impact on the composition and transmission of cultural information. Our findings corroborate recent studies that suggest the Corded Ware was a male focused society.

  16. The impact of male burials on the construction of Corded Ware identity: Reconstructing networks of information in the 3rd millennium BC.

    Directory of Open Access Journals (Sweden)

    Quentin Bourgeois

    Full Text Available The emergence of Corded Ware Groups throughout Europe in the 3rd millennium BC is one of the most defining events in European history. From the Wolga to the Rhine communities start to speak Indo-European languages and bury their dead in an extremely similar fashion. Recent ancient DNA-analyses identify a massive migration from the Eurasian steppe as the prime cause for this event. However, there is a fundamental difference between expressing a Corded Ware identity-the sharing of world views and ideas-and having a specific DNA-profile. Therefore, we argue that investigating the exchange of cultural information on burial rites between these communities serves as a crucial complement to the exchange of biological information. By adopting a practice perspective to 1161 Corded Ware burials throughout north-western Europe, combined with similarity indexes and network representations, we demonstrate a high degree of information sharing on the burial ritual between different regions. Moreover, we show that male burials are much more international in character than female burials and as such can be considered as the vector along which cultural information and Corded Ware identity was transmitted. This finding highlights an underlying complex societal organization of Corded Ware burial rites in which gender roles had a significant impact on the composition and transmission of cultural information. Our findings corroborate recent studies that suggest the Corded Ware was a male focused society.

  17. An investigation of pottery production technology for the West Slope wares from Dorylaion (Eskişehir/Turkey

    Directory of Open Access Journals (Sweden)

    Kara, A.

    2013-02-01

    Full Text Available Researches in the field of pottery production technology in ancient times, done in different settlements during the same period, may contribute to know relationships established within the different cultural communities. In ancient times, Anatolia (Asia Minor was the crossroads of ancient civilizations. There are several ancient settlements and artifacts belonging to Hellenistic culture (330-30 BC. West Slope wares from Dorylaion (Eskişehir/Turkey excavations are the main Hellenistic culture findings. In this study, different analytical techniques were employed for the characterization of these findings in order to enlighten the pottery production technology. Wavelength dispersive X-ray fluorescence (WDXRF and X-ray diffraction (XRD were employed to study the chemical and mineralogical composition of the bodies, respectively. Scanning electron microscopy (SEM and energy dispersive X-ray spectrometry (EDX were also performed for the microstructural and microchemical characterization of body and slip layers of the selected potsherds. The raw materials used, firing temperatures and atmosphere and related microstructural characteristics were discussed.La investigación de la tecnología utilizada por distintas civilizaciones en la producción de piezas cerámicas encontradas de un mismo asentamiento arqueológico, puede contribuir al conocimiento de relaciones establecidas entre distintas comunidades culturales. Anatolia (Asia Menor es considerada una importante encrucijada de antiguas civilizaciones que abarcan del Periodo de Bronce al imperio Otomano. Las piezas conocidas como West Slope son los principales restos de la cultura helenística (330-30 A.C. encontrados en las excavaciones de Dorylaion (Eskişehir/ Turquía. En este estudio, diferentes técnicas analíticas han sido empleadas en la caracterización de estas piezas, a fin de dilucidar la tecnología utilizada en su produción.. Fluorescencia de rayos X por onda dispersa (WDXRF y

  18. OpenCourseWare, Global Access and the Right to Education: Real access or marketing ploy?

    Directory of Open Access Journals (Sweden)

    Henk Huijser

    2008-02-01

    Full Text Available This paper explores the potential opportunities that OpenCourseWare (OCW offers in providing wider access to tertiary education, based on the ideal of ‘the right to education’. It first discusses the wider implications of OCW, and its underlying philosophy, before using a case study of a tertiary preparation program (TPP at the University of Southern Queensland (USQ to draw out the issues involved in offering a program that is created in a particular national and social context on a global scale. This paper draws specific attention to the digital divide, its effects in national and global contexts, and the particular obstacles this presents with regards to OCW. This paper argues that OCW provides many opportunities, both in terms of access to education and in terms of student recruitment and marketing for universities. To take full advantage of those opportunities, however, requires a concerted effort on the part of tertiary education institutions, and it requires a vision that is fundamentally informed by, and committed to, the principle of ‘the right to education’.

  19. Docencia y libre acceso: el Open Course Ware de la Universitat de València

    Directory of Open Access Journals (Sweden)

    Beatriz Gallardo Paúls

    2008-12-01

    Full Text Available En este artículo presentamos la Oficina OCW de la Universitat de València atendiendo al contexto general de aparición y sus características específicas. En primer lugar, contextualizamos el Open Course Ware en el ámbito de los movimientos Open y repasamos algunas de sus iniciativas. Después nos centramos en la caracterización de los usuarios/destinatarios prototípicos del OCW como “nativos digitales”, atendiendo a la distinción de dos modelos epistemológicos: la inteligencia colectiva (nativos y el paradigma del experto (inmigrantes digitales, algunas de cuyas premisas básicas se explican solamente por la aparición de las tecnologías digitales. Tras esta contextualización teórica, exponemos las características que definen el proyecto OCW, de la Universitat de València

  20. Informal Education of Adults in the Land of WoodenWare

    Directory of Open Access Journals (Sweden)

    Bojan Žnidaršič

    1997-12-01

    Full Text Available The fundamental aim of the project entitled the Land of Wooden Ware is developing a healthy environment and improving the conditions of life and work in rural areas. The project covers topographically varied, scarcely populated and demographically endangered areas in 11 municipalities (around 140,000 hectares. With respect to various standards, the entire expanse is a homogeneous region. Through a holistic approach, including education for permanent progress, direct expert help and other forms of help, the project aims to change the nega tive demographic curve and preserve the environment. The practical method used to achieve the goals set is direct work with people. The introductory phase includes exhibitions, articles in local and national media, etc., and will be followed by an extensive opinion poll among households. The results will serve as the basis for the preparation of lectures and workshops. The educational phase will dose with a study circle which will provide deeper insight into the subject. The entire effort (which includes the inhabitants, the municipality and VITRA is based on the desire to present rural regions as business opportunities for eco­farming, ecotourism, efficient use of renewable sources of energy, etc.

  1. Sudetic larch in Germany - Results of provenance and progeny research

    Energy Technology Data Exchange (ETDEWEB)

    Weisgerber, H. [Forest Centre for Management Planning, Research and Ecology, Hann Muenden (Germany)

    1995-12-31

    There are only a few older sources of Sudetic larch in Germany. They distinguish themselves by outstanding growth and low susceptibility to canker. This impression was confirmed by results of provenance research. The Sudetic larch tested in comparison with numerous other provenances proved to be fast-growing, site-tolerant, to a large extent insusceptible to canker, with straight but also slightly to moderately curved stems. The Sudetic provenances behave remarkably uniformly as regards these characteristics. In addition to provenance research investigations have been going on for a long time in Germany into individual differences within the Sudetic larch populations. A report is given on the results of progeny tests from free and controlled pollination, using the example of a seed orchard consisting of 54 clones. We point also to possibilities for improving stem quality by selection steps. The results of provenance and progeny research on Sudetic larch are in the meantime being put to use to a large extent in practical forestry. The forest administrations of various federal lands recommend the use of reproductive material of Sudetic origin and from seed orchards. 20 refs, 3 figs

  2. Launch Services, a Proven Model

    Science.gov (United States)

    Trafton, W. C.; Simpson, J.

    2002-01-01

    From a commercial perspective, the ability to justify "leap frog" technology such as reusable systems has been difficult to justify because the estimated 5B to 10B investment is not supported in the current flat commercial market coupled with an oversupply of launch service suppliers. The market simply does not justify investment of that magnitude. Currently, next generation Expendable Launch Systems, including Boeing's Delta IV, Lockheed Martin's Atlas 5, Ariane V ESCA and RSC's H-IIA are being introduced into operations signifying that only upgrades to proven systems are planned to meet the changes in anticipated satellite demand (larger satellites, more lifetime, larger volumes, etc.) in the foreseeable future. We do not see a new fleet of ELVs emerging beyond that which is currently being introduced, only continuous upgrades of the fleet to meet the demands. To induce a radical change in the provision of launch services, a Multinational Government investment must be made and justified by World requirements. The commercial market alone cannot justify such an investment. And if an investment is made, we cannot afford to repeat previous mistakes by relying on one system such as shuttle for commercial deployment without having any back-up capability. Other issues that need to be considered are national science and security requirements, which to a large extent fuels the Japanese, Chinese, Indian, Former Soviet Union, European and United States space transportation entries. Additionally, this system must support or replace current Space Transportation Economies with across-the-board benefits. For the next 10 to 20 years, Multinational cooperation will be in the form of piecing together launch components and infrastructure to supplement existing launch systems and reducing the amount of non-recurring investment while meeting the future requirements of the End-User. Virtually all of the current systems have some form of multinational participation: Sea Launch

  3. Phenotypic variation among five provenances of Pterocarpus ...

    African Journals Online (AJOL)

    Phenotypic variation among five provenances of Pterocarpus angolensis in Zimbabwe and Zambia. E Chisha-Kasumu, S Woodward, A Price. Abstract. The feasibility of utilising morphological markers for determining existing provenance variation in the African savanna tree Pterocarpus angolensis was assessed.

  4. Early performance of Casuarina junghuhniana provenances / land ...

    African Journals Online (AJOL)

    Early performance of Casuarina junghuhniana provenances / land races at Lushoto, Tanzania: scientific paper. ... Abstract. A trial involving 21 provenances form Indonesia and 7 ";local"; seed sources of Casuarina junghuhniana was established at Lushoto, Tanzania in March 1997. At 22 and 48 months of age, the following ...

  5. Active Provenance in Data-intensive Research

    Science.gov (United States)

    Spinuso, Alessandro; Mihajlovski, Andrej; Filgueira, Rosa; Atkinson, Malcolm

    2017-04-01

    Scientific communities are building platforms where the usage of data-intensive workflows is crucial to conduct their research campaigns. However managing and effectively support the understanding of the 'live' processes, fostering computational steering, sharing and re-use of data and methods, present several bottlenecks. These are often caused by the poor level of documentation on the methods and the data and how users interact with it. This work wants to explore how in such systems, flexibility in the management of the provenance and its adaptation to the different users and application contexts can lead to new opportunities for its exploitation, improving productivity. In particular, this work illustrates a conceptual and technical framework enabling tunable and actionable provenance in data-intensive workflow systems in support of reproducible science. It introduces the concept of Agile data-intensive systems to define the characteristic of our target platform. It shows a novel approach to the integration of provenance mechanisms, offering flexibility in the scale and in the precision of the provenance data collected, ensuring its relevance to the domain of the data-intensive task, fostering its rapid exploitation. The contributions address aspects of the scale of the provenance records, their usability and active role in the research life-cycle. We will discuss the use of dynamically generated provenance types as the approach for the integration of provenance mechanisms into a data-intensive workflow system. Enabling provenance can be transparent to the workflow user and developer, as well as fully controllable and customisable, depending from their expertise and the application's reproducibility, monitoring and validation requirements. The API that allows the realisation and adoption of a provenance type is presented, especially for what concerns the support of provenance profiling, contextualisation and precision. An actionable approach to provenance

  6. Special Section: The third provenance challenge on using the open provenance model for interoperability

    NARCIS (Netherlands)

    Simmhan, Y; Groth, P.T.; Moreau, L

    2011-01-01

    The third provenance challenge was organized to evaluate the efficacy of the Open Provenance Model (OPM) in representing and sharing provenance with the goal of improving the specification. A data loading scientific workflow that ingests data files into a relational database for the Pan-STARRS sky

  7. Provenance for Earth Science Data Systems

    Science.gov (United States)

    Hua, H.; Tilmes, C.; Ramapriyan, H. K.; Duggan, B.; Wilson, B. D.; Manipon, G. J. M.

    2014-12-01

    Earth Science Data Systems across NASA play a critical role in data processing, management, and analysis of NASA observations. However, there is a growing need to provide the provenance of these datasets as scientists increasingly need more transparency of the data products to improve their understanding and trust of the science results. Lessons learned from Climategate show that there is public demand for more transparency and understanding in the science process. Science data systems are key to enabling the capture, management, and use of production provenance information. Science analysis now also may involve merging multi-sensor datasets where lineage can facilitate the understanding of the data. But there does not exist a formal recommendation for an interoperable standard for provenance representation for use in NASA's Earth Science Data Systems. The W3C Provenance Working Group has a specification for the representation of provenance information. The standard is very general and intended to support the breadth of any domain. To better serve the needs of specific domain communities, the standard has several built in points of extensibility. We will present efforts by NASA's Earth Science Data Systems Working Group (ESDSWG) on Provenance to develop an Earth Science extension to the PROV specification (PROV-ES) and how it can be used in science data system to capture, consume, and interpret provenance information.

  8. Provenance for distributed biomedical workflow execution.

    Science.gov (United States)

    Madougou, Souley; Santcroos, Mark; Benabdelkader, Ammar; van Schaik, Barbera D C; Shahand, Shayan; Korkhov, Vladimir; van Kampen, Antoine H C; Olabarriaga, Sílvia D

    2012-01-01

    Scientific research has become very data and compute intensive because of the progress in data acquisition and measurement devices, which is particularly true in Life Sciences. To cope with this deluge of data, scientists use distributed computing and storage infrastructures. The use of such infrastructures introduces by itself new challenges to the scientists in terms of proper and efficient use. Scientific workflow management systems play an important role in facilitating the use of the infrastructure by hiding some of its complexity. Although most scientific workflow management systems are provenance-aware, not all of them come with provenance functionality out of the box. In this paper we describe the improvement and integration of a provenance system into an e-infrastructure for biomedical research based on the MOTEUR workflow management system. The main contributions of the paper are: presenting an OPM implementation using relational database backend for the provenance store, providing an e-infrastructure with a comprehensive provenance system, defining a generic approach to provenance implementation, potentially suitable for other workflow systems and application domains and demonstrating the value of this system based on use cases presenting the provenance data through a user-friendly web interface.

  9. Archives and societal provenance Australian essays

    CERN Document Server

    Piggott, Michael

    2012-01-01

    Records and archival arrangements in Australia are globally relevant because Australia's indigenous people represent the oldest living culture in the world, and because modern Australia is an ex-colonial society now heavily multicultural in outlook. Archives and Societal Provenance explores this distinctiveness using the theoretical concept of societal provenance as propounded by Canadian archival scholars led by Dr Tom Nesmith. The book's seventeen essays blend new writing and re-workings of earlier work, comprising the fi rst text to apply a societal provenance perspective to a national sett

  10. Provenance trials of larch in Siberia

    Energy Technology Data Exchange (ETDEWEB)

    Milyutin, L.I. [V.N. Sukachev Inst. of Forest SB RAS, Krasnoyarsk (Russian Federation)

    1995-12-31

    Some results of provenance trials of larch in Siberia are given. These provenance trials were established in the last thirty years by efforts of V.N. Sukaczev Inst. of Forest. Provenances and species of larch were tested in some field trials distributed over Siberia between Lat. N 52 deg and 66 deg, Long. E 88 deg and 113 deg: near Krasnoyarsk, in Republic Khakasia (an altitudes of 800 and 1200 metres), in the Lower Yenisei near Turukhansk, in the west and south regions of Krasnoyarsk territory, in the Upper Lena, near Chita. 2 refs

  11. Effect of preparation variables of plaster molds for slip casting of sanitary ware

    Directory of Open Access Journals (Sweden)

    Rafael E. Ochoa

    2017-11-01

    Full Text Available A full factorial design was used to evaluate the effect of various preparation conditions for making plaster molds for slip casting of sanitary ware. We investigated the relationships between the processing conditions, microstructure, and final properties of the plaster molds. The results showed that the rheological behavior, and hence, the time during which the plaster suspension is pourable for making the plaster molds (before an important increase in viscosity due to the precipitation of gypsum crystals were dependent on the preparation conditions. Variations in the chemical composition, pore size distribution, and microstructure explained the statistically significant effect of preparation variables (including the mixing time, water temperature, and water quality. Preparation conditions that promoted high initial viscosity of the plaster suspension (accelerative effect of the setting time developed less porous structure in the mold that principally increased the compressive strength (16%, deionized water instead of tap water and the casting rate (9%, water at 25 °C instead of 38 °C. According to the results are proposed optimum conditions to make the molds while avoiding unnecessary energy use. Resumen: Mediante un diseño factorial completo se evaluaron diferentes condiciones de preparación de moldes de yeso para colado tradicional de muebles sanitarios. Se investigó la relación entre procesamiento, microestructura y propiedades del molde. Los resultados mostraron que el comportamiento reológico y por lo tanto el tiempo durante el cual la suspensión de yeso se puede verter para conformar los moldes (antes de un incremento importante de viscosidad debido a la formación de cristales de yeso fueron dependientes de las condiciones de preparación. Variaciones en composición química, distribución de tamaño de poro y microestructura explicaron el efecto estadísticamente significativo de las variables de preparación (que incluyeron

  12. Characterization of Concrete made with Recycled Aggregate from Ceramic Sanitary Ware

    Directory of Open Access Journals (Sweden)

    Medina, C.

    2011-12-01

    Full Text Available This study examined the possibility of reusing the ceramic wastes of sanitary ware as coarse aggregate, in partial substitution (15, 20 y 25 % of natural coarse aggregates. Firstly, the characterization of recycled coarse ceramic aggregate was carried out subsequently proceeded to establish the parameters of dosage and manufacture of different concretes. Lastly, tests were conducted using these mixes to characterize physical and mechanical, and a study was carried out to identify the crystalline phases. Results showed that as the substitution proportion increased, the mechanical properties of the concrete improved, whilst physical properties remained practically constant. In view of these results, we conclude that it is possible to use this type of ceramic waste as coarse aggregate when mixing concrete destined for structural purposes.

    En este estudio se plantea la posibilidad de reutilizar los residuos cerámicos de sanitarios como árido grueso sustituyendo de forma parcial (15, 20 y 25 % al árido grueso natural. Para ello, se llevó a cabo la caracterización del árido cerámico reciclado y posteriormente se procedió a establecer los parámetros de dosificación y fabricación de los distintos hormigones. Finalmente, se realizó sobre los mismos unos ensayos de caracterización de las propiedades físicas y mecánicas, y un estudio de las fases cristalinas. Los resultados indican que a medida que se aumenta el porcentaje de sustitución se ven mejoradas las propiedades mecánicas de estos, mientras que las propiedades físicas se mantienen prácticamente constantes. A la vista de estos resultados se puede concluir que es posible la utilización de este tipo de residuo cerámico como árido grueso en la elaboración de hormigones con fines estructurales.

  13. THE INTERNATIONALIZATION PROCESS OF THE SALES OPERATIONS OF THE PRODUCTS OF A SANITARY WARE INDUSTRY

    Directory of Open Access Journals (Sweden)

    Emerson Antonio Maccari

    2010-11-01

    Full Text Available Internationalization consists of extending an organization's operations abroad. It involves decisions based on objective criteria and on an evaluation of strategies for entering the foreign market. The problem addressed in this study concerns a Brazilian firm’s difficulties developing its operations abroad. Thus, the purpose of this study was to identify the internationalization process of an industry in the sanitary ware segment in the development of its operations in another country. The research method employed was the single case study and data was collected by means of a semi-structured research script applied to company executives. The results showed that the internationalization process is characterized by the dynamic learning model (Uppsala Model, according to which an organization develops its activities abroad gradually, as it acquires experience and expertise in the market. The company is attempting to overcome cultural barriers and psychic distance in a slow internationalization process, aligned with the differentiation strategy and focus that it uses in the Brazilian market. This strategy comprises a sequence of planned and deliberate steps, with low investment exposure and risk. It was found that the firm adopts a strategy of exporting through distributors, this being a critical success factor, but that the distributor approval and development process lacks robust and formalized structuring. There are opportunities for improvement in the process of competitive intelligence in order to systematize the search and interpretation of information about the markets in which the company wants to operate.  Key-words: Internationalization of companies. Uppsala Model. Strategy. Competitive intelligence. 

  14. A Provenance Tracking Model for Data Updates

    Directory of Open Access Journals (Sweden)

    Gabriel Ciobanu

    2012-08-01

    Full Text Available For data-centric systems, provenance tracking is particularly important when the system is open and decentralised, such as the Web of Linked Data. In this paper, a concise but expressive calculus which models data updates is presented. The calculus is used to provide an operational semantics for a system where data and updates interact concurrently. The operational semantics of the calculus also tracks the provenance of data with respect to updates. This provides a new formal semantics extending provenance diagrams which takes into account the execution of processes in a concurrent setting. Moreover, a sound and complete model for the calculus based on ideals of series-parallel DAGs is provided. The notion of provenance introduced can be used as a subjective indicator of the quality of data in concurrent interacting systems.

  15. Causality and the Semantics of Provenance

    Directory of Open Access Journals (Sweden)

    James Cheney

    2010-06-01

    Full Text Available Provenance, or information about the sources, derivation, custody or history of data, has been studied recently in a number of contexts, including databases, scientific workflows and the Semantic Web. Many provenance mechanisms have been developed, motivated by informal notions such as influence, dependence, explanation and causality. However, there has been little study of whether these mechanisms formally satisfy appropriate policies or even how to formalize relevant motivating concepts such as causality. We contend that mathematical models of these concepts are needed to justify and compare provenance techniques. In this paper we review a theory of causality based on structural models that has been developed in artificial intelligence, and describe work in progress on using causality to give a semantics to provenance graphs.

  16. Tracking Provenance of Earth Science Data

    Science.gov (United States)

    Tilmes, Curt; Yesha, Yelena; Halem, Milton

    2010-01-01

    Tremendous volumes of data have been captured, archived and analyzed. Sensors, algorithms and processing systems for transforming and analyzing the data are evolving over time. Web Portals and Services can create transient data sets on-demand. Data are transferred from organization to organization with additional transformations at every stage. Provenance in this context refers to the source of data and a record of the process that led to its current state. It encompasses the documentation of a variety of artifacts related to particular data. Provenance is important for understanding and using scientific datasets, and critical for independent confirmation of scientific results. Managing provenance throughout scientific data processing has gained interest lately and there are a variety of approaches. Large scale scientific datasets consisting of thousands to millions of individual data files and processes offer particular challenges. This paper uses the analogy of art history provenance to explore some of the concerns of applying provenance tracking to earth science data. It also illustrates some of the provenance issues with examples drawn from the Ozone Monitoring Instrument (OMI) Data Processing System (OMIDAPS) run at NASA's Goddard Space Flight Center by the first author.

  17. MATERIAS PRIMAS, CONTEXTO Y PROCEDENCIA DE CUENTAS DE COLLAR EN LOS SITIOS ALAMITO (DEPTO. ANDALGALÁ, CATAMARCA (Raw Materials, Context, and Provenance of Necklace Beads at Alamito Sites (Andalgalá Department, Catamarca

    Directory of Open Access Journals (Sweden)

    María Soledad Gianfrancisco

    2017-12-01

    Full Text Available En este trabajo se presentan los resultados de análisis físicos y químicos efectuados sobre un conjunto de bienes ornamentales procedentes de los sitios Alamito. La identificación de materia prima alóctona empleada para su manufactura y la ausencia de elementos sustanciales que den cuenta de una producción local de los mismos nos permiten plantear la hipótesis de que fueron adquiridos mediante mecanismos de intercambio, como otros de los tantos productos que circularon en el flujo interregional de bienes en el contexto macrorregional del área surandina. ENGLISH: This paper presents the results of physical and chemical analyses carried out on a set of ornamental goods from Alamito sites. The identification of allochthonous material used for their manufacture and the absence of substantial elements that would indicate local production allow us to put forward the hypothesis that these ornamental goods were acquired through trade, like many other products that circulated through the interregional flow of goods in the macro-regional context of the southern Andes.

  18. Influence Of Heat Treathment On Caracteristics Of Inkjet Prints On Textile Material

    Directory of Open Access Journals (Sweden)

    Nemanja Kašiković

    2011-05-01

    Full Text Available This paper presents research regarding influence of heat treatment on changes of prints on textile material whichare obtained by inkjet printing technique. Research was done on three characteristic materials (100 % polyesteron which ware printed test chart. Test chart consisted of four colour fields each 100% of one of process colours(CMYK. Printing machine used was Mimaki JV22-160 with J-eco Subly nano inks. Variable factor was numberof ink layers, textile materials ware printed with one, two, three, four and five layers of ink. The analysis of heattreatment influence on prints was done according to SRPS F.S3.311 standard (temperature 110 0C. Total of 60samples were analyzed, 20 for each material used in this experiment. Resistance of colour to heat treatment andtransfer to cotton cloth was determined for characteristic temperatures by using the gray scale. The surface changesof textile material before and after heat treatment ware monitored by SEM analysis.

  19. Retention of Employees in Ceramic Sanitary Ware Factories in India: Role of Work Life Balance, Career Development and Supervisor Support

    Directory of Open Access Journals (Sweden)

    S. Umamaheswari

    2016-05-01

    Full Text Available The study examines the role of work life balance, career development and supervisor support on organization commitment over employees of unattended, ceramic sanitary ware factories in India. It also verifies the influence of organization commitment on retention and its mediating role. Findings reveal that organization commitment influences retention and all the above factors enhance it. Moreover, organization commitment partially mediates the relationship between proposed factors and retention. It also found that organization’s career development provision alone is not enough and need to be modified according to the employer’s expectation. Managerial implications and suggestions for future research were discussed.

  20. Management issues during HeartWare left ventricular assist device implantation and the role of transesophageal echocardiography

    Directory of Open Access Journals (Sweden)

    Sanjay Orathi Patangi

    2013-01-01

    Full Text Available Left ventricular assist devices (LVAD are increasingly used for mechanical circulatory support of patients with severe heart failure, primarily as a bridge to heart transplantation. Transesophageal echocardiography (TEE plays a major role in the clinical decision making during insertion of the devices and in the post-operative management of these patients. The detection of structural and device-related mechanical abnormalities is critical for optimal functioning of assist device. In this review article, we describe the usefulness of TEE for optimal perioperative management of patients presenting for HeartWare LVAD insertion.

  1. Model-based Abstraction of Data Provenance

    DEFF Research Database (Denmark)

    Probst, Christian W.; Hansen, René Rydhof

    2014-01-01

    to bigger models, and the analyses adapt accordingly. Our approach extends provenance both with the origin of data, the actors and processes involved in the handling of data, and policies applied while doing so. The model and corresponding analyses are based on a formal model of spatial and organisational......Identifying provenance of data provides insights to the origin of data and intermediate results, and has recently gained increased interest due to data-centric applications. In this work we extend a data-centric system view with actors handling the data and policies restricting actions....... This extension is based on provenance analysis performed on system models. System models have been introduced to model and analyse spatial and organisational aspects of organisations, to identify, e.g., potential insider threats. Both the models and analyses are naturally modular; models can be combined...

  2. Evaluation of filesystem provenance visualization tools.

    Science.gov (United States)

    Borkin, Michelle A; Yeh, Chelsea S; Boyd, Madelaine; Macko, Peter; Gajos, Krzysztof Z; Seltzer, Margo; Pfister, Hanspeter

    2013-12-01

    Having effective visualizations of filesystem provenance data is valuable for understanding its complex hierarchical structure. The most common visual representation of provenance data is the node-link diagram. While effective for understanding local activity, the node-link diagram fails to offer a high-level summary of activity and inter-relationships within the data. We present a new tool, InProv, which displays filesystem provenance with an interactive radial-based tree layout. The tool also utilizes a new time-based hierarchical node grouping method for filesystem provenance data we developed to match the user's mental model and make data exploration more intuitive. We compared InProv to a conventional node-link based tool, Orbiter, in a quantitative evaluation with real users of filesystem provenance data including provenance data experts, IT professionals, and computational scientists. We also compared in the evaluation our new node grouping method to a conventional method. The results demonstrate that InProv results in higher accuracy in identifying system activity than Orbiter with large complex data sets. The results also show that our new time-based hierarchical node grouping method improves performance in both tools, and participants found both tools significantly easier to use with the new time-based node grouping method. Subjective measures show that participants found InProv to require less mental activity, less physical activity, less work, and is less stressful to use. Our study also reveals one of the first cases of gender differences in visualization; both genders had comparable performance with InProv, but women had a significantly lower average accuracy (56%) compared to men (70%) with Orbiter.

  3. Analysis Traceability and Provenance for HEP

    Science.gov (United States)

    Shamdasani, Jetendr; McClatchey, Richard; Branson, Andrew; Kovács, Zsolt

    2015-12-01

    This paper presents the use of the CRISTAL software in the N4U project. CRISTAL was used to create a set of provenance aware analysis tools for the Neuroscience domain. This paper advocates that the approach taken in N4U to build the analysis suite is sufficiently generic to be able to be applied to the HEP domain. A mapping to the PROV model for provenance interoperability is also presented and how this can be applied to the HEP domain for the interoperability of HEP analyses.

  4. Elemental analysis-aided Raman spectroscopic studies on Chinese cloisonné wares and painted enamels from the Imperial Palace

    Science.gov (United States)

    Su, Yan; Qu, Liang; Duan, Hongying; Tarcea, Nicolae; Shen, Aiguo; Popp, Jürgen; Hu, Jiming

    2016-01-01

    Two kinds of enamels, including Chinese cloisonné wares from Fuwang chamber and gourd-shaped painted enamels decorations from the Forbidden City, in the Imperial Palace of China, are investigated by micro-Raman spectroscopy in combination with laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) and energy-dispersive X-ray fluorescence (EDXRF) in order to examine and analyze the composition of the glaze layer in each case. In this study the excitation is employed with either a NIR laser (785 nm) or a red laser (632.8 nm) in order to effectively eliminate the interference of background fluorescence and resonance effect. We have identified that the major matrix ingredients of the cloisonné wares are lead-based potash-lime silicate glasses while lead-potash silicate glass matrix is the main constituent for the painted enamels. Eight different colored areas of glaze layer also have been discussed in detail due to the distinct colors including turquoise, deep blue, yellow, white, red, pink, deep green and pale green. Their identification based on Raman data will be useful with regard to rapid and on site analysis and the restoration of the enamel decorations.

  5. Learning from the past: Rare ε-Fe2O3 in the ancient black-glazed Jian (Tenmoku) wares

    Science.gov (United States)

    Dejoie, Catherine; Sciau, Philippe; Li, Weidong; Noé, Laure; Mehta, Apurva; Chen, Kai; Luo, Hongjie; Kunz, Martin; Tamura, Nobumichi; Liu, Zhi

    2014-01-01

    Ancient Jian wares are famous for their lustrous black glaze that exhibits unique colored patterns. Some striking examples include the brownish colored “Hare's Fur” (HF) strips and the silvery “Oil Spot” (OS) patterns. Herein, we investigated the glaze surface of HF and OS samples using a variety of characterization methods. Contrary to the commonly accepted theory, we identified the presence of ε-Fe2O3, a rare metastable polymorph of Fe2O3 with unique magnetic properties, in both HF and OS samples. We found that surface crystals of OS samples are up to several micrometers in size and exclusively made of ε-Fe2O3. Interestingly, these ε-Fe2O3 crystals on the OS sample surface are organized in a periodic two dimensional fashion. These results shed new lights on the actual mechanisms and kinetics of polymorphous transitions of Fe2O3. Deciphering technologies behind the fabrication of ancient Jian wares can thus potentially help researchers improve the ε-Fe2O3 synthesis. PMID:24820819

  6. Efficacies of sodium hypochlorite and quaternary ammonium sanitizers for reduction of norovirus and selected bacteria during ware-washing operations.

    Science.gov (United States)

    Feliciano, Lizanel; Li, Jianrong; Lee, Jaesung; Pascall, Melvin A

    2012-01-01

    Cross-contamination of ready-to-eat (RTE) foods with pathogens on contaminated tableware and food preparation utensils is an important factor associated with foodborne illnesses. To prevent this, restaurants and food service establishments are required to achieve a minimum microbial reduction of 5 logs from these surfaces. This study evaluated the sanitization efficacies of ware-washing protocols (manual and mechanical) used in restaurants to clean tableware items. Ceramic plates, drinking glasses and stainless steel forks were used as the food contact surfaces. These were contaminated with cream cheese and reduced-fat milk inoculated with murine norovirus (MNV-1), Escherichia coli K-12 and Listeria innocua. The sanitizing solutions tested were sodium hypochlorite (chlorine), quaternary ammonium (QAC) and tap water (control). During the study, the survivability and response to the experimental conditions of the bacterial species was compared with that of MNV-1. The results showed that current ware-washing protocols used to remove bacteria from tableware items were not sufficient to achieve a 5 log reduction in MNV-1 titer. After washing, a maximum of 3 log reduction in the virus were obtained. It was concluded that MNV-1 appeared to be more resistant to both the washing process and the sanitizers when compared with E. coli K-12 and L. innocua.

  7. Efficacies of sodium hypochlorite and quaternary ammonium sanitizers for reduction of norovirus and selected bacteria during ware-washing operations.

    Directory of Open Access Journals (Sweden)

    Lizanel Feliciano

    Full Text Available Cross-contamination of ready-to-eat (RTE foods with pathogens on contaminated tableware and food preparation utensils is an important factor associated with foodborne illnesses. To prevent this, restaurants and food service establishments are required to achieve a minimum microbial reduction of 5 logs from these surfaces. This study evaluated the sanitization efficacies of ware-washing protocols (manual and mechanical used in restaurants to clean tableware items. Ceramic plates, drinking glasses and stainless steel forks were used as the food contact surfaces. These were contaminated with cream cheese and reduced-fat milk inoculated with murine norovirus (MNV-1, Escherichia coli K-12 and Listeria innocua. The sanitizing solutions tested were sodium hypochlorite (chlorine, quaternary ammonium (QAC and tap water (control. During the study, the survivability and response to the experimental conditions of the bacterial species was compared with that of MNV-1. The results showed that current ware-washing protocols used to remove bacteria from tableware items were not sufficient to achieve a 5 log reduction in MNV-1 titer. After washing, a maximum of 3 log reduction in the virus were obtained. It was concluded that MNV-1 appeared to be more resistant to both the washing process and the sanitizers when compared with E. coli K-12 and L. innocua.

  8. Treatment of device thrombus in the HeartWare HVAD: Success and outcomes depend significantly on the initial treatment strategy.

    Science.gov (United States)

    Stulak, John M; Dunlay, Shannon M; Sharma, Shashank; Haglund, Nicholas A; Davis, Mary Beth; Cowger, Jennifer; Shah, Palak; Masood, Faraz; Aaronson, Keith D; Pagani, Francis D; Maltais, Simon

    2015-12-01

    Pump thrombosis is a major adverse event in patients supported with a left ventricular assist device (LVAD). Treatment approaches include device exchange, lytic therapy, or augmentation of anticoagulation or antiplatelet therapy. The optimal strategy in the HeartWare HVAD Ventricular Assist System (HeartWare, Framingham, MA) is uncertain, and because few large studies have examined differing treatment outcomes, we have reviewed findings from the Mechanical Circulatory Support Research Network registry. Between March 2009 and August 2014, 175 patients (133 male) underwent implantation of the HeartWare HVAD at institutions that comprise the Mechanical Circulatory Support Research Network. Median age at implant was 59 years (range, 18-76 years). Follow-up was available in all patients for a median of 6 months (maximum, 61 months) and for a total of 163 patient-years of support. There were 36 pump thromboses (using Interagency Registry for Mechanically Assisted Circulatory Support criteria) in 21 patients for a total event rate of 0.22 events/patient-year of support; 13 patients had 1 event, 4 had 2, 2 had 3, 1 had 4, and 1 had 5. The median time to the first thrombosis was 6.4 months, and to each subsequent thrombosis was 4, 3, 2, and 2 months, respectively. Primary treatment success was defined as the patient remaining alive and within the first 30 days of the initial treatment be free from stroke, recurrence of pump thrombosis, device exchange, or urgent transplantation (United Network of Organ Sharing Status 1A). Medical treatment was defined as tissue plasminogen activator, heparin plus glycoprotein IIb/IIIa inhibitor, or heparin alone, not followed by surgical treatment within 72 hours. Initial medical treatment was used in 29 episodes (tissue plasminogen activator in 24, heparin alone in 4, and heparin plus glycoprotein IIb/IIIa in 1) and surgical (device exchange) in 7. Medical treatment was successful in 14 of 29 episodes (48%). Complications of medical

  9. Model-based Abstraction of Data Provenance

    NARCIS (Netherlands)

    Probst, Christian W.; Hansen, René Rydhof

    Identifying provenance of data provides insights to the origin of data and intermediate results, and has recently gained increased interest due to data-centric applications. In this work we extend a data-centric system view with actors handling the data and policies restricting actions. This

  10. Provenance studies through petrography and heavy mineral ...

    African Journals Online (AJOL)

    Fifty five sandstone samples of Lokoja and Agbaja Formations were collected for textural, geochemical, petrographic and heavy minerals analysis with a view to determining the provenance of the sedimentary rocks.The texture of Lokoja Sandstones reveals poorly sorted sub-arkose immature sandstone with the quartz ...

  11. Geographic characterisation of African provenances of Faidherbia ...

    African Journals Online (AJOL)

    The objectives of the study were to: (i) determine the phylogenetic relationship among the 16 provenances in order to establish the species centre of origin, and (ii) determine the extent of genetic diversity in F. alb ida using PCR markers. ITS data did not produce any consistent regional or geographic pattern. RAPD data ...

  12. provenance studies through petrography and heavy mineral ...

    African Journals Online (AJOL)

    USER

    Fifty five sandstone samples of Lokoja and Agbaja Formations were collected for textural, geochemical, petrographic and heavy minerals analysis with a view to determining the provenance of the sedimentary rocks.The texture of Lokoja Sandstones reveals poorly sorted sub-arkose immature sandstone with the quartz.

  13. The PBase Scientific Workflow Provenance Repository

    Directory of Open Access Journals (Sweden)

    Víctor Cuevas-Vicenttín

    2014-10-01

    Full Text Available Scientific workflows and their supporting systems are becoming increasingly popular for compute-intensive and data-intensive scientific experiments. The advantages scientific workflows offer include rapid and easy workflow design, software and data reuse, scalable execution, sharing and collaboration, and other advantages that altogether facilitate “reproducible science”. In this context, provenance – information about the origin, context, derivation, ownership, or history of some artifact – plays a key role, since scientists are interested in examining and auditing the results of scientific experiments. However, in order to perform such analyses on scientific results as part of extended research collaborations, an adequate environment and tools are required. Concretely, the need arises for a repository that will facilitate the sharing of scientific workflows and their associated execution traces in an interoperable manner, also enabling querying and visualization. Furthermore, such functionality should be supported while taking performance and scalability into account. With this purpose in mind, we introduce PBase: a scientific workflow provenance repository implementing the ProvONE proposed standard, which extends the emerging W3C PROV standard for provenance data with workflow specific concepts. PBase is built on the Neo4j graph database, thus offering capabilities such as declarative and efficient querying. Our experiences demonstrate the power gained by supporting various types of queries for provenance data. In addition, PBase is equipped with a user friendly interface tailored for the visualization of scientific workflow provenance data, making the specification of queries and the interpretation of their results easier and more effective.

  14. Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data.

    Science.gov (United States)

    Sahoo, Satya S; Bodenreider, Olivier; Hitzler, Pascal; Sheth, Amit; Thirunarayan, Krishnaprasad

    The Resource Description Framework (RDF) format is being used by a large number of scientific applications to store and disseminate their datasets. The provenance information, describing the source or lineage of the datasets, is playing an increasingly significant role in ensuring data quality, computing trust value of the datasets, and ranking query results. Current provenance tracking approaches using the RDF reification vocabulary suffer from a number of known issues, including lack of formal semantics, use of blank nodes, and application-dependent interpretation of reified RDF triples. In this paper, we introduce a new approach called Provenance Context Entity (PaCE) that uses the notion of provenance context to create provenance-aware RDF triples. We also define the formal semantics of PaCE through a simple extension of the existing RDF(S) semantics that ensures compatibility of PaCE with existing Semantic Web tools and implementations. We have implemented the PaCE approach in the Biomedical Knowledge Repository (BKR) project at the US National Library of Medicine. The evaluations demonstrate a minimum of 49% reduction in total number of provenance-specific RDF triples generated using the PaCE approach as compared to RDF reification. In addition, performance for complex queries improves by three orders of magnitude and remains comparable to the RDF reification approach for simpler provenance queries.

  15. Characterizing Provenance in Visualization and Data Analysis: An Organizational Framework of Provenance Types and Purposes.

    Science.gov (United States)

    Ragan, Eric D; Endert, Alex; Sanyal, Jibonananda; Chen, Jian

    2016-01-01

    While the primary goal of visual analytics research is to improve the quality of insights and findings, a substantial amount of research in provenance has focused on the history of changes and advances throughout the analysis process. The term, provenance, has been used in a variety of ways to describe different types of records and histories related to visualization. The existing body of provenance research has grown to a point where the consolidation of design knowledge requires cross-referencing a variety of projects and studies spanning multiple domain areas. We present an organizational framework of the different types of provenance information and purposes for why they are desired in the field of visual analytics. Our organization is intended to serve as a framework to help researchers specify types of provenance and coordinate design knowledge across projects. We also discuss the relationships between these factors and the methods used to capture provenance information. In addition, our organization can be used to guide the selection of evaluation methodology and the comparison of study outcomes in provenance research.

  16. PAV ontology: provenance, authoring and versioning.

    Science.gov (United States)

    Ciccarese, Paolo; Soiland-Reyes, Stian; Belhajjame, Khalid; Gray, Alasdair Jg; Goble, Carole; Clark, Tim

    2013-11-22

    Provenance is a critical ingredient for establishing trust of published scientific content. This is true whether we are considering a data set, a computational workflow, a peer-reviewed publication or a simple scientific claim with supportive evidence. Existing vocabularies such as Dublin Core Terms (DC Terms) and the W3C Provenance Ontology (PROV-O) are domain-independent and general-purpose and they allow and encourage for extensions to cover more specific needs. In particular, to track authoring and versioning information of web resources, PROV-O provides a basic methodology but not any specific classes and properties for identifying or distinguishing between the various roles assumed by agents manipulating digital artifacts, such as author, contributor and curator. We present the Provenance, Authoring and Versioning ontology (PAV, namespace http://purl.org/pav/): a lightweight ontology for capturing "just enough" descriptions essential for tracking the provenance, authoring and versioning of web resources. We argue that such descriptions are essential for digital scientific content. PAV distinguishes between contributors, authors and curators of content and creators of representations in addition to the provenance of originating resources that have been accessed, transformed and consumed. We explore five projects (and communities) that have adopted PAV illustrating their usage through concrete examples. Moreover, we present mappings that show how PAV extends the W3C PROV-O ontology to support broader interoperability. The initial design of the PAV ontology was driven by requirements from the AlzSWAN project with further requirements incorporated later from other projects detailed in this paper. The authors strived to keep PAV lightweight and compact by including only those terms that have demonstrated to be pragmatically useful in existing applications, and by recommending terms from existing ontologies when plausible. We analyze and compare PAV with related

  17. Eastern desert ware : traces of the inhabitants of the eastern desert in Egypt and Sudan during the 4th-6th centuries CE

    NARCIS (Netherlands)

    Barnard, Hans

    2008-01-01

    Several sites in the desert between the Nile and the Red Sea, in Egypt and Sudan, as well as in the Nubian Nile Valley have produced the sherds of decorated hand-made cups and bowls, now identified as Eastern Desert Ware (EDW). Because of their small number and enigmatic origin these sherds have

  18. Titian: Data Provenance Support in Spark.

    Science.gov (United States)

    Interlandi, Matteo; Shah, Kshitij; Tetali, Sai Deep; Gulzar, Muhammad Ali; Yoo, Seunghyun; Kim, Miryung; Millstein, Todd; Condie, Tyson

    2015-11-01

    Debugging data processing logic in Data-Intensive Scalable Computing (DISC) systems is a difficult and time consuming effort. Today's DISC systems offer very little tooling for debugging programs, and as a result programmers spend countless hours collecting evidence (e.g., from log files) and performing trial and error debugging. To aid this effort, we built Titian, a library that enables data provenance-tracking data through transformations-in Apache Spark. Data scientists using the Titian Spark extension will be able to quickly identify the input data at the root cause of a potential bug or outlier result. Titian is built directly into the Spark platform and offers data provenance support at interactive speeds-orders-of-magnitude faster than alternative solutions-while minimally impacting Spark job performance; observed overheads for capturing data lineage rarely exceed 30% above the baseline job execution time.

  19. MCloud: Secure Provenance for Mobile Cloud Users

    Science.gov (United States)

    2016-10-03

    P.O. Box 12211 Research Triangle Park, NC 27709-2211 fraud detection , data protection, provenance, mobile device, social network REPORT DOCUMENTATION...trackers. In addition, at mobile application level, we have introduced Marco and Vamos, systems that detect plagiarized videos, falsely claimed to have...our results on each dimension studied. 1. Mobile Video Fraud Detection We have focused on detecting plagiarized mobile videos. For instance, let

  20. Emergency HeartWare Ventricular Assist Device (HVAD) exchange due to pump thrombosis using minimally invasive technique.

    Science.gov (United States)

    Antończyk, Remigiusz; Trejnowska, Ewa; Pacholewicz, Jerzy; Wolny, Tomasz; Nadziakiewicz, Paweł; Antończyk, Karolina; Copik, Izabela; Piontek, Magdalena; Jasińska, Małgorzata; Filipiak, Krzysztof; Głowacki, Maciej; Gawlikowski, Maciej; Borowicz, Marcin; Kustosz, Roman; Waszak, Jacek; Przybyłowski, Piotr; Zembala, Marian; Zakliczyński, Michał; Zembala, Michał Oskar

    2017-03-01

    Left ventricular assist device (LVAD) thrombosis remains a dreadful complication of mechanical circulatory support, with an incidence of 8-12% depending on the pump type and patient's comorbidities. Fibrinolysis may be considered early in pump thrombosis, but when contraindicated a pump exchange remains the only alternative. This short report documents an emergency LVAD exchange in a 55-year-old man who underwent LVAD (HeartWare Inc) implantation in 2013 as a bridge to transplantation. Four months after the initial surgery, he suffered from a hemorrhagic stroke despite properly managed anticoagulation. On February 17th, 2017 he was re-admitted with LVAD pump thrombosis. As fibrinolysis was contraindicated, an emergency pump exchange was performed via a limited thoracic incision in order to minimize surgical trauma, reduce intraoperative complications and facilitate immediate post-operative recovery. This report documents the very first LVAD pump exchange as well as the first one performed via a minimally invasive approach in Poland.

  1. The Open Provenance Model core specification (v1.1)

    NARCIS (Netherlands)

    Moreau, L; Clifford, B; Freire, J; Futrelle, J; Gill, Y; Groth, P.T.; Kwasnikowska, N; Miles, S; Missier, P; Myers, J; Plale, B; Simmhan, Y; Stephan, E; Van den Bussche, J

    2011-01-01

    The Open Provenance Model is a model of provenance that is designed to meet the following requirements: (1) Allow provenance information to be exchanged between systems, by means of a compatibility layer based on a shared provenance model. (2) Allow developers to build and share tools that operate

  2. RAPD profile variation amongst provenances of neem.

    Science.gov (United States)

    Farooqui, N; Ranade, S A; Sane, P V

    1998-08-01

    Neem, described as a tree for solving global problems, is an evergreen, long-lived, multipurpose tree of the tropics with a wide distribution range in India. It is believed to be highly cross-pollinated. Inter-provenance variations have been reported in neem in case of morphological and physiological characters. Yet no reports about the genetic determinism for these variations are available to our knowledge. In order to have an idea about the extent and/or nature of genetic (DNA) variation in neem, the powerful RAPD technique has been employed. RAPD profiles of 34 accessions/provenances of neem were generated with 200 decamer random primers, of which the data from the 49 primers, that resulted in reproducible amplification products, were considered for analysis. Based on the presence/absence of bands, a similarity matrix was computed. Dendrogram was constructed by UPGMA method based on the pairwise similarities amongst the RAPD profiles. The similarities in RAPD profiles amongst the different DNAs was more than that expected due to the cross-pollinated nature of the tree and furthermore, these more-than-expected similarities were not due to random chance. These results suggest that neem may have a narrow genetic base.

  3. Provenance of sediments from Sumatra, Indonesia

    Science.gov (United States)

    Liebermann, Christof; Hall, Robert; Gough, Amy

    2017-04-01

    The island of Sumatra is situated at the south-western margin of the Indonesian archipelago. Sumatra is affected by active continental margin volcanism along the Sunda Trench, west of Sumatra as a result of active northeast subduction of the Indian plate under the Eurasian plate. Exposures of the Palaeozoic meta-sedimentary basement are mainly limited in extent to the northeast-southwest trending Barisan Mountain chain. The younger Cenozoic rocks are widespread across Sumatra, but can be grouped into structurally subdivided 'fore-arc', 'intramontane', and 'back-arc' basins. However, the formation of the basins pre-dates the current magmatic arc, thus a classical arc-related generation model can not be applied. The Cenozoic formations are well studied due to hydrocarbon enrichment, but little is known about their provenance history. A comprehensive sedimentary provenance study of the Cenozoic formations can aid in the wider understanding of Sumatran petroleum plays, can contribute to palaeographic reconstruction of western SE Asia, and might help to simplify the overall stratigraphy of Sumatra. This work represents a multi-proxy provenance study of sedimentary rocks from the main Cenozoic basins of Sumatra, alongside sediment from present-day river systems. The project refines the provenance in two ways: first, by studying the heavy mineral assemblages of the targeted formations, and secondly, by U-Pb detrital zircon dating using LA-ICP-MS to identify the age-range of the potential sediment sources. Preliminary U-Pb zircon age-data of >1500 concordant grains (10% discordant cut-off), heavy mineral compositions, and thin section analysis from two fieldwork seasons indicate a mixed provenance model, with a proximal igneous source, and mature basement rocks. An increase of the proximal signature in Lower-Miocene strata indicated by the occurrence of unstable heavy mineral phases such as apatite, and clinopyroxene suggests a major change of the source at the Oligocene

  4. A unified framework for managing provenance information in translational research

    Directory of Open Access Journals (Sweden)

    Sahoo Satya S

    2011-11-01

    Full Text Available Abstract Background A critical aspect of the NIH Translational Research roadmap, which seeks to accelerate the delivery of "bench-side" discoveries to patient's "bedside," is the management of the provenance metadata that keeps track of the origin and history of data resources as they traverse the path from the bench to the bedside and back. A comprehensive provenance framework is essential for researchers to verify the quality of data, reproduce scientific results published in peer-reviewed literature, validate scientific process, and associate trust value with data and results. Traditional approaches to provenance management have focused on only partial sections of the translational research life cycle and they do not incorporate "domain semantics", which is essential to support domain-specific querying and analysis by scientists. Results We identify a common set of challenges in managing provenance information across the pre-publication and post-publication phases of data in the translational research lifecycle. We define the semantic provenance framework (SPF, underpinned by the Provenir upper-level provenance ontology, to address these challenges in the four stages of provenance metadata: (a Provenance collection - during data generation (b Provenance representation - to support interoperability, reasoning, and incorporate domain semantics (c Provenance storage and propagation - to allow efficient storage and seamless propagation of provenance as the data is transferred across applications (d Provenance query - to support queries with increasing complexity over large data size and also support knowledge discovery applications We apply the SPF to two exemplar translational research projects, namely the Semantic Problem Solving Environment for Trypanosoma cruzi (T.cruzi SPSE and the Biomedical Knowledge Repository (BKR project, to demonstrate its effectiveness. Conclusions The SPF provides a unified framework to effectively manage provenance

  5. A unified framework for managing provenance information in translational research.

    Science.gov (United States)

    Sahoo, Satya S; Nguyen, Vinh; Bodenreider, Olivier; Parikh, Priti; Minning, Todd; Sheth, Amit P

    2011-11-29

    A critical aspect of the NIH Translational Research roadmap, which seeks to accelerate the delivery of "bench-side" discoveries to patient's "bedside," is the management of the provenance metadata that keeps track of the origin and history of data resources as they traverse the path from the bench to the bedside and back. A comprehensive provenance framework is essential for researchers to verify the quality of data, reproduce scientific results published in peer-reviewed literature, validate scientific process, and associate trust value with data and results. Traditional approaches to provenance management have focused on only partial sections of the translational research life cycle and they do not incorporate "domain semantics", which is essential to support domain-specific querying and analysis by scientists. We identify a common set of challenges in managing provenance information across the pre-publication and post-publication phases of data in the translational research lifecycle. We define the semantic provenance framework (SPF), underpinned by the Provenir upper-level provenance ontology, to address these challenges in the four stages of provenance metadata:(a) Provenance collection - during data generation(b) Provenance representation - to support interoperability, reasoning, and incorporate domain semantics(c) Provenance storage and propagation - to allow efficient storage and seamless propagation of provenance as the data is transferred across applications(d) Provenance query - to support queries with increasing complexity over large data size and also support knowledge discovery applicationsWe apply the SPF to two exemplar translational research projects, namely the Semantic Problem Solving Environment for Trypanosoma cruzi (T.cruzi SPSE) and the Biomedical Knowledge Repository (BKR) project, to demonstrate its effectiveness. The SPF provides a unified framework to effectively manage provenance of translational research data during pre and post

  6. Handling Undiscovered Vulnerabilities Using a Provenance Network

    Directory of Open Access Journals (Sweden)

    Valentine Anantharaj

    2009-06-01

    Full Text Available This paper elaborates on a novel approach at preventing exploits from vulnerabilities which remain uncovered during the testing phase of a system's development lifecycle. The combination of predicted usage patterns, a Provenance network model and a clustering methodology provide a secure failure mechanism for both known and unknown security issues within the system. The paper also addresses of the requisite supporting infrastructure and deployment issues related to the model. The idea is to approach the growing problem of newer and more complex vulnerabilities in an ever more intricate and vast set of systems using a generic software state mapping procedure for recognizable (and thus the complementary unrecognizable patterns to judge the stability at each step in an operation sequence. Thus abstracting these vulnerabilities at a higher level provides us a generic technique to classify and handle such concerns in the future and in turn prevent exploits before a corrective patch is released.

  7. Lead-glazed ceramic ware and blood lead levels of children in the city of Oaxaca, Mexico.

    Science.gov (United States)

    Azcona-Cruz, M I; Rothenberg, S J; Schnaas, L; Zamora-Muñoz, J S; Romero-Placeres, M

    2000-01-01

    Although Mexico substantially reduced use of leaded gasoline during the 1990s, lead-glazed pottery remains a significant source of population exposure. Most previous studies of lead in nonoccupationally exposed groups in Mexico have been conducted in the Mexico City metropolitan area. Oaxaca, a poor southern state of Mexico, has a centuries-old tradition of use of low temperature lead-glazed ceramic ware manufactured mainly by small family businesses. We measured blood lead levels in 220 8-10-y-old children (i.e., not from pottery-making families) who were students in the innercity of Oaxaca and in the mothers of all children. The geometric mean blood lead level of the children was 10.5 microg/dl (+7.0/-4.3 microg/dl standard deviation; range = 1.3-35.5 microg/dl). The corresponding mean value for the mothers was 13.4 (+9.0/-5.4 microg/dl standard deviation; range = 2.8-45.3 microg/dl). We used cutoffs that were greater than or equal to 10 microg/dl, 20 microg/dl, and 30 microg/dl, and we determined that 54.9%, 10.3%, and 3.0% of the children were at or above the respective criteria. We accounted for 25.2% of the variance in blood lead levels of the children, using maternal responses to a questionnaire that assessed possible lead sources in a linear multiple-regression model. The most important factors related to lead levels were family use of lead-glazed pottery, use of animal fat in cooking, and family income. The addition of maternal blood lead level to the model increased accounted variance in blood lead to 48.0%. In logistic-regression modeling of children's blood lead levels, we used a cutoff of greater than or equal to 10 microg/dl, and we found that use of lead-glazed pottery was the most important of all questionnaire items that were predictive of blood lead levels (odds ratio = 2.98). In Oaxaca, as is the case elsewhere in Mexico, lead-glazed ceramic ware remains a significant risk factor for elevated blood lead levels in children.

  8. Lapis lazuli provenance study by means of micro-PIXE

    Energy Technology Data Exchange (ETDEWEB)

    Re, Alessandro, E-mail: alessandro.re@to.infn.it [Dipartimento di Fisica Sperimentale, Universita di Torino, Via Giuria 1, 10125 Torino (Italy); INFN Sezione di Torino and Centre of Excellence ' Nanostructured Interfaces and Surfaces' , Universita di Torino, Via P. Giuria 1, 10125 Torino (Italy); Giudice, Alessandro Lo [Dipartimento di Fisica Sperimentale, Universita di Torino, Via Giuria 1, 10125 Torino (Italy); INFN Sezione di Torino and Centre of Excellence ' Nanostructured Interfaces and Surfaces' , Universita di Torino, Via P. Giuria 1, 10125 Torino (Italy); Angelici, Debora [Dipartimento di Fisica Sperimentale, Universita di Torino, Via Giuria 1, 10125 Torino (Italy); Calusi, Silvia; Giuntini, Lorenzo; Massi, Mirko [Dipartimento di Fisica, Universita and INFN Sezione di Firenze, Via Sansone 1, 50019 Sesto Fiorentino, Firenze (Italy); Pratesi, Giovanni [Dipartimento di Scienze della Terra and Museo di Storia Naturale, Universita di Firenze, Via G. La Pira 4, 50121 Firenze (Italy)

    2011-10-15

    In this paper we report about the micro-PIXE characterisation of lapis lazuli, for a provenance study of this semi-precious stone, used for glyptic as early as 7000 years ago. The final aim is to find markers permitting to identify the origin of the raw material coming from three quarries in regions of historical importance: Afghanistan, Pamir Mountains and Siberia. This may help to reconstruct trade routes, especially for ancient objects for which written testimonies are scanty or absent at all. Due to the heterogeneity of lapis lazuli we concentrate our attention on single phases instead of the whole stone; in particular we focused on two of the main phases: lazurite, responsible for the blue colour, and diopside, the most frequent accessory mineral. This study was preceded and completed by means of microanalysis with Scanning Electron Microscopy (SEM-EDX) and Cold-Cathodoluminescence (cold-CL) analysis. Despite the limited number of analysed samples, results are sufficient to exclude/suggest a few features as provenance markers, partly confirming what has been previously published in literature.

  9. Variability of Physiological Parameters of European Beech Provenances in International Provenance Trials in Serbia

    Directory of Open Access Journals (Sweden)

    STOJNIĆ, Srdjan

    2010-01-01

    Full Text Available In this study, the variability of physiological parameters of five provenances of Europeanbeech (Fagus sylvatica, which were planted at two locations with different ecological conditions atFruška Gora and Debeli Lug, was estimated. Provenance trials were established in the framework ofCOST Action E52: "Evaluation of Beech Genetic Resources for Sustainable Forestry". 2-3 years oldseedlings originating from Croatia, Germany, Bosnia, Austria and Serbia were planted in blocks offifty plants with a spacing of 2 x 1 m. Physiological parameters such as net photosynthesis, rate oftranspiration and stomatal conductance were measured with a portable gas analysis system. Generally,provenances from Fruška Gora Mountain showed higher intensity of all physiological parameters thanprovenances located at site Debeli Lug. High correlations among rates of net photosynthesis andtranspiration, on one side, and stomatal conductance, on the other side, were found. ANOVA testindicates that variability of net photosynthesis, transpiration and stomatal conductance of investigatedprovenances, at the two locations, was influenced both by environmental conditions of sites andgenetic constitution of provenances.

  10. Provenance tracking in the ViroLab Virtual Laboratory

    NARCIS (Netherlands)

    Baliś, B.; Bubak, M.; Wach, J.

    2008-01-01

    Provenance describes the process which led to the creation of a piece of data. Tracking provenance of experiment results is essential in modern environments which support conducting of in silico experiments. We present a provenance tracking approach developed as part of the virtual laboratory of the

  11. Evaluation of 19 provenances of Calliandra calothyrsus at Gairo and ...

    African Journals Online (AJOL)

    Performance evaluation was conducted among nineteen provenances of Calliandra calothyrsus from meso-America, Indonesia and Tanzania. Two trials were established in February and March, 1996 at Gairo (8 provenances) and Sokoine University of Agriculture (SUA) Farm (17 provenances) in Morogoro, Tanzania.

  12. Docencia y libre acceso: el Open Course Ware de la Universitat de València

    Directory of Open Access Journals (Sweden)

    2008-12-01

    Full Text Available En este artículo presentamos la Oficina OCW de la Universitat de València atendiendo al contexto general de aparición y sus características específicas. En primer lugar, contextualizamos el Open Course Ware en el ámbito de los movimientos Open y repasamos algunas de sus iniciativas. Después nos centramos en la caracterización de los usuarios/destinatarios prototípicos del OCW como “nativos digitales”, atendiendo a la distinción de dos modelos epistemológicos: la inteligencia colectiva (nativos y el paradigma del experto (inmigrantes digitales, algunas de cuyas premisas básicas se explican solamente por la aparición de las tecnologías digitales. Tras esta contextualización teórica, exponemos las características que definen el proyecto OCW, de la Universitat de València

  13. Characterization of ceramic ware fragments from Aizanoi-Turkey by micro Raman, XRPD and SEM-EDX spectrometry

    Science.gov (United States)

    Caner, Evin; Güney, Bilge Alp

    2017-04-01

    Ceramic fragments from the antique city of Aizanoi, Turkey were investigated by micro Raman spectrometry in conjunction with XRPD and SEM-EDX analyses. Some basic physical characteristics of the ceramic samples were also investigated. Illite and muscovite were determined as the main clay types in the ceramic fragments. Clay used in the production of ceramic wares was found to be calcareous in most of the samples. No high temperature clay minerals were detected in the ceramics. All ceramic fragments were found to be rich in iron content. Hematite and magnetite were identified to be the principle coloring agents in the investigated samples. The ceramics with hematite content were assessed to be fired in an oxygen rich atmosphere whereas the samples having magnetite were proposed to be fired in an inadequately ventilated kiln. Based on the presence of calcite, dolomite and TiO2 in the crystal form of anatase in the samples, firing temperature during production was estimated to be below 750 °C.

  14. Durability of recycled concrete made with recycled ceramic sanitary ware aggregate. Inter-indicator relationships

    OpenAIRE

    Medina, César; Sánchez de Rojas, M. I.; Thomas, C; Polanco, J. A.; Frías, Moisés

    2016-01-01

    Effective industrial waste management is one of the challenges facing modern society. One possible solution, the inclusion of different proportions of waste of varying nature in concrete, calls for a thorough study of the durability of the resulting materials. Direct and indirect durability indices can be used to ensure that such concrete is able to withstand the actions to which it will be exposed throughout its service life to design safety, functionality and aesthetics and with no unexpect...

  15. Materialism.

    Science.gov (United States)

    Melnyk, Andrew

    2012-05-01

    Materialism is nearly universally assumed by cognitive scientists. Intuitively, materialism says that a person's mental states are nothing over and above his or her material states, while dualism denies this. Philosophers have introduced concepts (e.g., realization and supervenience) to assist in formulating the theses of materialism and dualism with more precision, and distinguished among importantly different versions of each view (e.g., eliminative materialism, substance dualism, and emergentism). They have also clarified the logic of arguments that use empirical findings to support materialism. Finally, they have devised various objections to materialism, objections that therefore serve also as arguments for dualism. These objections typically center around two features of mental states that materialism has had trouble in accommodating. The first feature is intentionality, the property of representing, or being about, objects, properties, and states of affairs external to the mental states. The second feature is phenomenal consciousness, the property possessed by many mental states of there being something it is like for the subject of the mental state to be in that mental state. WIREs Cogn Sci 2012, 3:281-292. doi: 10.1002/wcs.1174 For further resources related to this article, please visit the WIREs website. Copyright © 2012 John Wiley & Sons, Ltd.

  16. Big Data Provenance: Challenges, State of the Art and Opportunities.

    Science.gov (United States)

    Wang, Jianwu; Crawl, Daniel; Purawat, Shweta; Nguyen, Mai; Altintas, Ilkay

    2015-01-01

    Ability to track provenance is a key feature of scientific workflows to support data lineage and reproducibility. The challenges that are introduced by the volume, variety and velocity of Big Data, also pose related challenges for provenance and quality of Big Data, defined as veracity. The increasing size and variety of distributed Big Data provenance information bring new technical challenges and opportunities throughout the provenance lifecycle including recording, querying, sharing and utilization. This paper discusses the challenges and opportunities of Big Data provenance related to the veracity of the datasets themselves and the provenance of the analytical processes that analyze these datasets. It also explains our current efforts towards tracking and utilizing Big Data provenance using workflows as a programming model to analyze Big Data.

  17. Tracking Provenance in ORNL's Flexible Research Platforms

    Energy Technology Data Exchange (ETDEWEB)

    Hensley, Zachary P [ORNL; Sanyal, Jibonananda [ORNL; New, Joshua Ryan [ORNL

    2013-08-01

    Provenance is dened as information about the origin of objects, a concept that applies to both physical and digital objects and often overlaps both. The use of provenance in systems designed for research is an important but forgotten feature. Provenance allows for proper and exact tracking of information, its use, its lineage, its derivations and other metadata that are important for correctly adhering to the scien- tic method. In our project's prescribed use of provenance, researchers can determine detailed information about the use of sensor data in their experiments on ORNL's Flexible Research Platforms (FRPs). Our project's provenance system, Provenance Data Management System (ProvDMS), tracks information starting with the creation of information by an FRP sensor. The system determines station information, sensor information, and sensor channel information. The system allows researchers to derive generations of experiments from the sensor data and tracks their hierarchical flow. Key points can be seen in the history of the information as part of the information's workflow. The concept of provenance and its usage in science is relatively new and while used in other cases around the world, our project's provenance diers in a key area. To keep track of provenance, most systems must be designed or redesigned around the new provenance system. Our system is designed as a cohesive but sepa- rate entity and allows for researchers to continue using their own methods of analysis without being constrained in their ways in order to track the provenance. We have designed ProvDMS using a lightweight provenance library, Core Provenance Library (CPL) v.6 In addition to keeping track of sensor data experiments and its provenance, ProvDMS also provides a web-enabled visualization of the inheritance.

  18. Data Provenance Architecture for the Geosciences

    Science.gov (United States)

    Murphy, F.; Irving, D. H.

    2012-12-01

    The pace at which geoscientific insights inform societal development quickens with time and these insights drive decisions and actions of ever-increasing human and economic significance. Until recently academic, commercial and government bodies have maintained distinct bodies of knowledge to support scientific enquiry as well as societal development. However, it has become clear that the curation of the body of data is an activity of equal or higher social and commercial value. We address the community challenges in the curation of, access to, and analysis of scientific data including: the tensions between creators, providers and users; incentives and barriers to sharing; ownership and crediting. We also discuss the technical and financial challenges in maximising the return on the effort made in generating geoscientific data. To illustrate how these challenges might be addressed in the broader geoscientific domain, we describe the high-level data governance and analytical architecture in the upstream Oil Industry. This domain is heavily dependent on costly and highly diverse geodatasets collected and assimilated over timeframes varying from seconds to decades. These data must support both operational decisions at the minute-hour timefame and strategic and economic decisions of enterprise or national scale, and yet be sufficiently robust to last the life of a producing field. We develop three themes around data provenance, data ownership and business models for data curation. 1/ The overarching aspiration is to ensure that data provenance and quality is maintained along the analytical workflow. Hence if data on which a publication or report changes, the report and its publishers can be notified and we describe a mechanism by which dependent knowledge products can be flagged. 2/ From a cost and management point of view we look at who "owns" data especially in cases where the cost of curation and stewardship is significant compared to the cost of acquiring the data

  19. Key Provenance of Earth Science Observational Data Products

    Science.gov (United States)

    Conover, H.; Plale, B.; Aktas, M.; Ramachandran, R.; Purohit, P.; Jensen, S.; Graves, S. J.

    2011-12-01

    As the sheer volume of data increases, particularly evidenced in the earth and environmental sciences, local arrangements for sharing data need to be replaced with reliable records about the what, who, how, and where of a data set or collection. This is frequently called the provenance of a data set. While observational data processing systems in the earth sciences have a long history of capturing metadata about the processing pipeline, current processes are limited in both what is captured and how it is disseminated to the science community. Provenance capture plays a role in scientific data preservation and stewardship precisely because it can automatically capture and represent a coherent picture of the what, how and who of a particular scientific collection. It reflects the transformations that a data collection underwent prior to its current form and the sequence of tasks that were executed and data products applied to generate a new product. In the NASA-funded Instant Karma project, we examine provenance capture in earth science applications, specifically the Advanced Microwave Scanning Radiometer - Earth Observing System (AMSR-E) Science Investigator-led Processing system (SIPS). The project is integrating the Karma provenance collection and representation tool into the AMSR-E SIPS production environment, with an initial focus on Sea Ice. This presentation will describe capture and representation of provenance that is guided by the Open Provenance Model (OPM). Several things have become clear during the course of the project to date. One is that core OPM entities and relationships are not adequate for expressing the kinds of provenance that is of interest in the science domain. OPM supports name-value pair annotations that can be used to augment what is known about the provenance entities and relationships, but in Karma, annotations cannot be added during capture, but only after the fact. This limits the capture system's ability to record something it

  20. Automatic Provenance Recording for Scientific Data using Trident

    Science.gov (United States)

    Simmhan, Y.; Barga, R.; van Ingen, C.

    2008-12-01

    Provenance is increasingly recognized as being critical to the understanding and reuse of scientific datasets. Given the rapid generation of scientific data from sensors and computational model results, it is not practical to manually record provenance for data and automated techniques for provenance capture are essential. Scientific workflows provide a framework for representing computational models and complex transformations of scientific data, and present a means for tracking the operations performed to derive a dataset. The Trident Scientific Workbench is a workflow system that natively incorporates provenance capture of data derived as part of the workflow execution. The applications used as part of a Trident workflow can execute on a remote computational cluster, such as a supercomputing center on in the Cloud, or on the local desktop of the researcher, and provenance on data derived by the applications is seamlessly captured. Scientists also have the option to annotate the provenance metadata using domain specific tags such as, for example, GCMD keywords. The provenance records thus captured can be exported in the Open Provenance Model* XML format that is emerging as a provenance standard in the eScience community or visualized as a graph of data and applications. The Trident workflow system and provenance recorded by it has been successfully applied in the Neptune oceanography project and is presently being tested in the Pan-STARRS astronomy project. *http://twiki.ipaw.info/bin/view/Challenge/OPM

  1. Data provenance assurance in the cloud using blockchain

    Science.gov (United States)

    Shetty, Sachin; Red, Val; Kamhoua, Charles; Kwiat, Kevin; Njilla, Laurent

    2017-05-01

    Ever increasing adoption of cloud technology scales up the activities like creation, exchange, and alteration of cloud data objects, which create challenges to track malicious activities and security violations. Addressing this issue requires implementation of data provenance framework so that each data object in the federated cloud environment can be tracked and recorded but cannot be modified. The blockchain technology gives a promising decentralized platform to build tamper-proof systems. Its incorruptible distributed ledger/blockchain complements the need of maintaining cloud data provenance. In this paper, we present a cloud based data provenance framework using block chain which traces data record operations and generates provenance data. We anchor provenance data records into block chain transactions, which provide validation on provenance data and preserve user privacy at the same time. Once the provenance data is uploaded to the global block chain network, it is extremely challenging to tamper the provenance data. Besides, the provenance data uses hashed user identifiers prior to uploading so the blockchain nodes cannot link the operations to a particular user. The framework ensures that the privacy is preserved. We implemented the architecture on ownCloud, uploaded records to blockchain network, stored records in a provenance database and developed a prototype in form of a web service.

  2. Data Provenance and Data Management in eScience

    CERN Document Server

    Bai, Quan; Giugni, Stephen; Williamson, Darrell; Taylor, John

    2013-01-01

    eScience allows scientific research to be carried out in highly distributed environments. The complex nature of the interactions in an eScience infrastructure, which often involves a range of instruments, data, models, applications, people and computational facilities, suggests there is a need for data provenance and data management (DPDM). The W3C Provenance Working Group defines the provenance of a resource as a “record that describes entities and processes involved in producing and delivering or otherwise influencing that resource”. It has been widely recognised that provenance is a critical issue to enable sharing, trust, authentication and reproducibility of eScience process.   Data Provenance and Data Management in eScience identifies the gaps between DPDM foundations and their practice within eScience domains including clinical trials, bioinformatics and radio astronomy. The book covers important aspects of fundamental research in DPDM including provenance representation and querying. It also expl...

  3. Radial variation of basic density and wood cells dimensions of Cariniana legalis (Mart. O. Kuntze depending on the provenance

    Directory of Open Access Journals (Sweden)

    Israel Luiz de Lima

    2011-12-01

    Full Text Available Provenance tests can provide information about the silvicultural behavior and wood quality for the exploration of variability and conservation of genetic material for future use. This study aims to investigate the effect of provenances on some wood properties of the Cariniana legalis. Seedlings of three provenances (Porto Ferreira, Piracicaba and Campinas were planted in Luiz Antonio-SP using randomized block design with six replicates. After 26 years of planting, eighteen trees, six of each provenance, were felled. The properties studied were basic density and the cellular dimensions. The results revealed that the basic density, fiber length, fiber wall thickness, vessel element length, vessel diameter, uniseriate ray height and width were influenced by the provenances. A good positive relationship was found among the fiber length, fiber wall thickness, vessel element length; vessel diameter and multiseriate ray height with radial position and a negative relation between vessel frequency with the radial position.

  4. Towards a common provenance model for research publications

    Science.gov (United States)

    Fu, L.; Ma, X.; West, P.; Beaulieu, S. E.; Di Stefano, M.; Fox, P. A.

    2014-12-01

    Provenance is information about entities, activities, and people involved in producing a piece of data or thing, which can be used to form assessments about its quality, reliability or trustworthiness. In a research publication, provenance includes entities, activities and people involved in the process leading to the parts of the publication such as figures, tables, paragraphs etc. Such information is often desirable for the readers to correctly interpret publication content and enables them to evaluate the credibility of the reported results by digging into the software in use, source data and responsible agents or even reproducing the results themselves. In this presentation, we will describe our ontology designed to model the preparing process of research publications based on our experience from two projects, both focusing on provenance capturing for research publications. The first project is about capturing provenance information for a National Climate Assessment (NCA) report of the US Global Change Research Program (USGCRP), and the second about capturing provenance information for an Ecosystem Status Report (ESR) of the Northeast Fisheries Science Center (NEFSC). Both projects base their provenance modeling on the W3C Provenance ontology (PROV-O), which proves to be an effective way to create models for provenance capturing. We will illustrate the commonalities and differences between use cases of these two projects and how we derive a common model from models specifically designed to capture provenance information for each of the projects.

  5. Semantic Workflows and Provenance-Aware Software (Invited)

    Science.gov (United States)

    Gil, Y.

    2013-12-01

    Workflows are increasingly used in science to manage complex computations and data processing at large scale. Intelligent workflow systems provide assistance in setting up parameters and data, validating workflows created by users, and automating the generation of workflows from high-level user guidance. These systems use semantic workflows that extend workflow representations with semantic constraints that express characteristics of the data and analytic models. Reasoning algorithms propagate these semantic constraints throughout the workflow structure, select executable components for underspecified steps, and suggest parameter values. Semantic workflows also enhance provenance records with abstract steps that reflect the overall data analysis method rather than just execution traces. Intelligent workflow systems are provenance-aware, since they both use and generate provenance and metadata as the data is being processed. Provenance-aware software enhances scientific analysis by propagating upstream metadata and provenance to new data products. Through the use of provenance standards, such as the recent W3C PROV recommendation for provenance on the Web, provenance-aware software can significantly enhance scientific data analysis, publication, and reuse. New capabilities are enabled when provenance is brought to the forefront in the design of software systems for science.

  6. Use of lead-glazed ceramic ware and lead-based folk remedies in a rural community of Baja California, Mexico.

    Science.gov (United States)

    Welton, Michael; Rodriguez-Lainz, Alfonso; Loza, Oralia; Brodine, Stephanie; Fraga, Miguel

    2016-06-14

    Lead exposure from lead-glazed ceramics (LGCs) and traditional folk remedies have been identified as significant sources of elevated blood lead levels in Mexico and the United States. This study took place from 2005 to 2012 in a rural community in Baja California, Mexico. 1) Investigate the knowledge, attitudes, and practices related to lead and lead exposures from LGCs and two lead-based folk remedies (azarcon and greta); and 2) evaluate a pilot intervention to provide alternative lead-safe cookware. A baseline household survey was conducted in 2005, followed by the pilot intervention in 2006, and follow-up surveys in 2007 and 2012. For the pilot intervention, families who reported using LGCs were given lead-safe alternative cookware to try and its acceptance was evaluated in the following year. The community was mostly of indigenous background from Oaxaca and a high proportion of households had young children. In 2006, all participants using traditional ceramic ware at the time (n = 48) accepted lead-safe alternative cookware to try, and 97% reported that they were willing to exchange traditional ceramic ware for lead-safe alternatives. The use of ceramic cookware decreased from over 90% during respondents' childhood household use in Oaxaca to 47% in 2006 among households in Baja California, and further reduced to 16.8% in 2012. While empacho, a folk illness, was widely recognized as an intestinal disorder, there was almost universal unfamiliarity with the use and knowledge of azarcon and greta for its treatment. This pilot evaluation provides evidence 1) for an effective and innovative strategy to reduce lead exposure from LGCs and 2) of the feasibility of substituting lead-free alternative cookware for traditional ceramic ware in a rural indigenous community, when delivered in a culturally appropriate manner with health education. This strategy could complement other approaches to reduce exposure to lead from LGCs. © The Author(s) 2016.

  7. Infrared reflectance spectra: Effects of particle size, provenance and preparation

    Energy Technology Data Exchange (ETDEWEB)

    Su, Yin-Fong; Myers, Tanya L.; Brauer, Carolyn S.; Blake, Thomas A.; Forland, Brenda M.; Szecsody, James E.; Johnson, Timothy J.

    2014-09-22

    We have recently developed methods for making more accurate infrared total and diffuse directional - hemispherical reflectance measurements using an integrating sphere. We have found that reflectance spectra of solids, especially powders, are influenced by a number of factors including the sample preparation method, the particle size and morphology, as well as the sample origin. On a quantitative basis we have investigated some of these parameters and the effects they have on reflectance spectra, particularly in the longwave infrared. In the IR the spectral features may be observed as either maxima or minima: In general, upward-going peaks in the reflectance spectrum result from strong surface scattering, i.e. rays that are reflected from the surface without bulk penetration, whereas downward-going peaks are due to either absorption or volume scattering, i.e. rays that have penetrated or refracted into the sample interior and are not reflected. The light signals reflected from solids usually encompass all such effects, but with strong dependencies on particle size and preparation. This paper measures the reflectance spectra in the 1.3 – 16 micron range for various bulk materials that have a combination of strong and weak absorption bands in order to observe the effects on the spectral features: Bulk materials were ground with a mortar and pestle and sieved to separate the samples into various size fractions between 5 and 500 microns. The median particle size is demonstrated to have large effects on the reflectance spectra. For certain minerals we also observe significant spectral change depending on the geologic origin of the sample. All three such effects (particle size, preparation and provenance) result in substantial change in the reflectance spectra for solid materials; successful identification algorithms will require sufficient flexibility to account for these parameters.

  8. Adaptation of eastern whitepine provenances to planting sites

    Science.gov (United States)

    Maurice E., Jr. Demeritt; Peter W. Garrett

    1996-01-01

    Eastern white pine provenances from the extreme limits of the natural range of this species are changing from above- and below-average stability to average stability for height growth with increasing age. The regression method is useful for evaluating the stability of provenance to planting sites. The same general conclusions are reached for the performance at...

  9. Growth and provenance variation of Pinus caribaea var ...

    African Journals Online (AJOL)

    A total of 21 provenances and sources of Pinus caribaea var. hondurensis were tested in 48 provenance / progeny trials in Brazil, South Africa, and Venezuela. Growth rates in Brazil and Venezuela were quite promising, and were less encouraging in Colombia. In Brazil and Venezuela, heights were around 12 m and mean ...

  10. Growth and quality of Grevillea robusta provenances in Ruhande ...

    African Journals Online (AJOL)

    Wood productivity has been observed to decline when tree germplasm used is collected from landrace populations of exotic species. This study intends to evaluate the performance of seven provenances and one landrace of G. robusta in terms of wood yield and quality. Although the outstanding provenances reported ...

  11. Research traceability using provenance services for biomedical analysis.

    Science.gov (United States)

    Anjum, Ashiq; Bloodsworth, Peter; Branson, Andrew; Habib, Irfan; McClatchey, Richard; Solomonides, Tony; Soomro, Kamran; The Neugrid Consortium

    2010-01-01

    We outline the approach being developed in the neuGRID project to use provenance management techniques for the purposes of capturing and preserving the provenance data that emerges in the specification and execution of workflows in biomedical analyses. In the neuGRID project a provenance service has been designed and implemented that is intended to capture, store, retrieve and reconstruct the workflow information needed to facilitate users in conducting user analyses. We describe the architecture of the neuGRID provenance service and discuss how the CRISTAL system from CERN is being adapted to address the requirements of the project and then consider how a generalised approach for provenance management could emerge for more generic application to the (Health)Grid community.

  12. Maintenance techniques proven on CO/sub 2/ line

    Energy Technology Data Exchange (ETDEWEB)

    Najera, G.

    1986-11-17

    Two-years' operation of the 218-mile, 20-in. Bravo CO/sub 2/ pipeline by Amoco Pipeline Co. in West Texas has proven several maintenance techniques for CO/sub 2/ pipeline operations. These techniques center on corrosion control, pipeline blowdown procedures, pipeline linefill procedures, high-pressure CO/sub 2/ pipeline hot-tap welding, and CO/sub 2/ pipeline material specifications. External corrosion on the Bravo line is prevented in the same manner as on any other conventional pipeline operated by Amoco. During construction, the entire pipeline was coated with a polyethylene extruded coating. After construction, rectifiers were equally spaced along the pipeline, keeping pipe-to-soil potential readings less than 3 v to prevent disbonding of this coating. Internal corrosion control is a different matter. One of the most critical parameters concerning internal corrosion is the amount of water contained in the CO/sub 2/ entering the pipeline. If the CO/sub 2/ contains more than a specified amount of water, carbonic acid may form and quickly corrode the inside of the pipe. Prior to commissioning, the pipeline was dehydrated to a -40/sup 0/F. dew point to prevent carbonic acid attack during initial line fill. It has been shown that CO/sub 2/ at pipeline operating conditions can hold up to 160 lb-mass water per MMscf in solution at 100% saturation.

  13. SmartCityWare

    DEFF Research Database (Denmark)

    Mohamed, Nader; Al-Jaroodi, Jameela; Jawhar, Imad

    2017-01-01

    Smart cities are becoming a reality. Various aspects of modern cities are being automated and integrated with information and communication technologies to achieve higher functionality, optimized resources utilization, and management, and improved quality of life for the residents. Smart cities...... rely heavily on utilizing various software, hardware, and communication technologies to improve the operations in areas, such as healthcare, transportation, energy, education, logistics, and many others, while reducing costs and resources consumption. One of the promising technologies to support...

  14. Applications of biotite inclusion composition to zircon provenance determination

    Science.gov (United States)

    Bell, Elizabeth A.; Boehnke, Patrick; Mark Harrison, T.

    2017-09-01

    Detrital zircons are the only confirmed surviving remnants of >4.03 Ga crust while younger detrital zircons provide a parallel record of more recent crustal evolution to that preserved in crystalline rocks. Zircons often preserve inclusions that may provide clues as to the origins of out-of-context grains in the sedimentary record. Previous studies have established that inclusions of biotite in magmatic zircon are compositionally well-matched to biotite in the source rock matrix, although a direct application to ancient detrital zircons has not been made. A number of studies have documented variations in the Fe, Mg, and Al contents of magmatic biotite from different source rocks and tectonic settings, suggesting that biotite inclusions may indeed serve as provenance indicators for detrital zircons. Consistent with earlier studies, we find that the FeO*/MgO ratio of magmatic biotite from continental arcs, collisional, and within-plate settings varies with relative oxidation state as well as whole-rock FeO*/MgO, while its Al2O3/(FeO* + MgO) varies with whole-rock A/CNK (molar Al/(2 ṡ Ca + Na + K)). Biotite from oxidized metaluminous and reduced S-type granitoids can be readily distinguished from each other using FeO*/MgO and Al2O3/(FeO* + MgO), while biotite from reduced I-type and oxidized peraluminous granites may in some cases be more ambiguous. Biotite from peralkaline and reduced A-type granites are also distinguishable from all other categories by Al2O3/(FeO* + MgO) and FeO*/MgO, respectively. Biotite inclusions in Hadean zircons from Jack Hills, Western Australia indicate a mixture of metaluminous and reduced S-type host rocks, while inclusions in 3.6-3.8 Ga detrital zircons from the Nuvvuagittuq Supracrustal Belt indicate more oxidized peraluminous magmas. These results highlight the diversity of felsic materials on the early Earth and suggest that biotite inclusions are applicable to zircon provenance throughout the sedimentary record.

  15. HeartWare ventricular assist device as a bridge to heart transplantation in a patient with congenitally corrected transposition of the great arteries and dextrocardia.

    Science.gov (United States)

    Soofi, Muhammad A; Ignaszewski, Andrew P; Cheung, Anson W; Bashir, Jamil G

    2016-12-01

    Congenitally corrected transposition of the great arteries (ccTGA) is a rare condition with prevalence of Dextrocardia is reported among 20% of them. Among patients with ccTGA, heart failure is a common presentation, especially in the fourth or fifth decade of life and survival is dismal without heart transplantation. A left ventricular assist device (LVAD) is considered for bridge to transplantation if early heart transplantation is not available or as destination therapy for patients ineligible for heart transplant. Our patient had ccTGA and dextrocardia, after which he developed failure of a systemic ventricle and severe systemic atrioventricular valve, subpulmonic atrioventricular valve and aortic valve regurgitation along with paroxysmal atrial fibrillation. A third-generation ventricular assist device HeartWare ventricular assist device (HVAD, HeartWare, Inc., Framingham, MA, USA) was implanted as a bridge to transplantation with concomitant aortic valve replacement with a bioprosthetic valve. There is no prior publication on HVAD implantation in patient having both ccTGA and dextrocardia. Our case report includes the patient's summary and literature review encompassing limited experience of LVADs in patients with ccTGA and dextrocardia. © The Author 2016. Published by Oxford University Press on behalf of the European Association for Cardio-Thoracic Surgery. All rights reserved.

  16. Insight provenance for spatiotemporal visual analytics: Theory, review, and guidelines

    Directory of Open Access Journals (Sweden)

    Andreas Hall

    2017-12-01

    Full Text Available Research on provenance, which focuses on different ways to describe and record the history of changes and advances made throughout an analysis process, is an integral part of visual analytics. This paper focuses on providing the provenance of insight and rationale through visualizations while emphasizing, first, that this entails a profound understanding of human cognition and reasoning and that, second, the special nature of spatiotemporal data needs to be acknowledged in this process. A recently proposed human reasoning framework for spatiotemporal analysis, and four guidelines for the creation of visualizations that provide the provenance of insight and rationale published in relation to that framework, work as a starting point for this paper. While these guidelines are quite abstract, this paper set out to create a set of more concrete guidelines. On the basis of a review of available provenance solutions, this paper identifies a set of key features that are of relevance when providing the provenance of insight and rationale and, on the basis of these features, produces a new set of complementary guidelines that are more practically oriented than the original ones. Together, these two sets of guidelines provide both a theoretical and practical approach to the problem of providing the provenance of insight and rationale. Providing these kinds of guidelines represents a new approach in provenance research.

  17. Komadu: A Capture and Visualization System for Scientific Data Provenance

    Directory of Open Access Journals (Sweden)

    Isuru Suriarachchi

    2015-03-01

    Full Text Available Data provenance captured from scientific applications is a critical precursor to data sharing and reuse. For researchers wanting to repurpose data, it is a source of information about the lineage and attribution of the data and this is needed in order to establish trust in a data set. Komadu is a standalone provenance capture and visualization system for capturing, representing, and manipulating provenance coming from scientific tools, infrastructures, and repositories. It uses the W3C PROV standard [1] in representing data, and it is the successor of the Karma [2] provenance capture system which was based on Open Provenance Model (OPM [3]. Komadu comes with two different interfaces: a Web Services interface based on Apache Axis2 [4] and a messaging interface based on RabbitMQ [5]. Komadu is completely open source and the source code is publicly available on GitHub [6]. Even though Komadu has been used most extensively in relation to scientific research, its interfaces are designed to collect and visualize provenance of any kind of application needing provenance.

  18. The Symbiotic Relationship between Scientific Workflow and Provenance (Invited)

    Science.gov (United States)

    Stephan, E.

    2010-12-01

    The purpose of this presentation is to describe the symbiotic nature of scientific workflows and provenance. We will also discuss the current trends and real world challenges facing these two distinct research areas. Although motivated differently, the needs of the international science communities are the glue that binds this relationship together. Understanding and articulating the science drivers to these communities is paramount as these technologies evolve and mature. Originally conceived for managing business processes, workflows are now becoming invaluable assets in both computational and experimental sciences. These reconfigurable, automated systems provide essential technology to perform complex analyses by coupling together geographically distributed disparate data sources and applications. As a result, workflows are capable of higher throughput in a shorter amount of time than performing the steps manually. Today many different workflow products exist; these could include Kepler and Taverna or similar products like MeDICI, developed at PNNL, that are standardized on the Business Process Execution Language (BPEL). Provenance, originating from the French term Provenir “to come from”, is used to describe the curation process of artwork as art is passed from owner to owner. The concept of provenance was adopted by digital libraries as a means to track the lineage of documents while standards such as the DublinCore began to emerge. In recent years the systems science community has increasingly expressed the need to expand the concept of provenance to formally articulate the history of scientific data. Communities such as the International Provenance and Annotation Workshop (IPAW) have formalized a provenance data model. The Open Provenance Model, and the W3C is hosting a provenance incubator group featuring the Proof Markup Language. Although both workflows and provenance have risen from different communities and operate independently, their mutual

  19. Growth and quality of Grevillea robusta provenances in Ruhande ...

    African Journals Online (AJOL)

    user

    . 11. Kalinganire, A. & Hall, J.B. 1993. Growth and biomass production of young Grevillea robusta provenances in Rwanda. Forest Ecology and. Management 62: 73-84. 12. Kalinganire, A. & ESEGU, F. 1995. Silviculture and genetic variation of.

  20. DataONE: A Data Federation with Provenance Support

    Energy Technology Data Exchange (ETDEWEB)

    Cao, Yang [University of Illinois at Urbana-Champaign; Jones, Christopher [National Center for Ecological Analysis and Synthesis, Santa Barbara; Cuevas-Vicenttin, Victor [ Universidad Popular Autónoma del Estado de Puebla, Puebla, Mexico; Jones, Matthew B. [National Center for Ecological Analysis and Synthesis, Santa Barbara; Ludascher, Bertram [University of Illinois at Urbana-Champaign; McPhillips, Timothy [University of Illinois at Urbana-Champaign; Missier, Paolo [Newcastle University, UK; Schwalm, Christopher [Woods Hole Research Center (WHRC), Massachusetts; Slaughter, Peter [National Center for Ecological Analysis and Synthesis, Santa Barbara; Vieglais, Dave [University of Kansas; Walker, Lauren [National Center for Ecological Analysis and Synthesis, Santa Barbara

    2016-01-01

    DataONE is a federated data network focusing on earth and environmental science data. We present the provenance and search features of DataONE by means of an example involving three earth scientists who interact through a DataONE Member Node. DataONE provenance systems enable reproducible research and facilitate proper attribution of scientific results transitively across generations of derived data products.

  1. Performance and genetic variation of big-leaf mahogany (Swietenia macrophylla King) in provenance and progeny trials in the Yucatan Peninsula of Mexico.

    Science.gov (United States)

    Kevyn E. Wightman; Sheila E. Ward; Jeremy P. Haggar; Bartolo Rodriguez Santiago; Jonathan P. Cornelius

    2008-01-01

    Stocks of the valuable big-leaf mahogany (Swietenia macrophylla King) are declining, and trials for growth and pest resistance are needed to select material for plantations. Seeds were collected from 67 open-pollinated trees from five provenances in the Yucatan Peninsula of Mexico and planted in three provenance/progeny trials in the state of Quintana Roo, Mexico, in...

  2. [Ecological adaptability of different provenance Eupatorium adenophorum Spreng].

    Science.gov (United States)

    Zhou, Meng; Liu, Wen-Yao; ma, Wen-Zhang; Zhao, Xiang-Jian

    2009-07-01

    By using reciprocal transplant method, Eupatorium adenophorum Spreng. seedlings of five different provenances were reciprocally transplanted into six different sites in Yunnan Province, with the survival rate, plant height, branch number, biomass, flower number per plant, and seed production measured during the period from April 2007 to May 2008. The seedlings growth and reproductive traits of different provenance E. adenophorum all showed strong plasticity to environmental conditions. With increasing latitude and altitude of transplant site, plant height, branch number, biomass, flower number per plant, and seed production of different provenance E. adenophorum decreased, and the differences in these growth and reproductive traits were significant among the transplant sites. However, there were no significant differences in these traits among different provenance E. adenophorum. Provenance and transplant site had no significant interactive effects on the above-mentioned traits except seed production. At each site, the survival rate, growth potential, and reproductive capability of local provenance E. adenophorum didn't have any superiority, illustrating that the success in the invasion of E. adenophorum in Yunnan Province was mainly due to the phenotypic plasticity of the plant, while local adaptability only played lesser important role.

  3. Lightweight Provenance Service for High-Performance Computing

    Energy Technology Data Exchange (ETDEWEB)

    Dai, Dong; Chen, Yong; Carns, Philip; Jenkins, John; Ross, Robert

    2017-09-09

    Provenance describes detailed information about the history of a piece of data, containing the relationships among elements such as users, processes, jobs, and workflows that contribute to the existence of data. Provenance is key to supporting many data management functionalities that are increasingly important in operations such as identifying data sources, parameters, or assumptions behind a given result; auditing data usage; or understanding details about how inputs are transformed into outputs. Despite its importance, however, provenance support is largely underdeveloped in highly parallel architectures and systems. One major challenge is the demanding requirements of providing provenance service in situ. The need to remain lightweight and to be always on often conflicts with the need to be transparent and offer an accurate catalog of details regarding the applications and systems. To tackle this challenge, we introduce a lightweight provenance service, called LPS, for high-performance computing (HPC) systems. LPS leverages a kernel instrument mechanism to achieve transparency and introduces representative execution and flexible granularity to capture comprehensive provenance with controllable overhead. Extensive evaluations and use cases have confirmed its efficiency and usability. We believe that LPS can be integrated into current and future HPC systems to support a variety of data management needs.

  4. Effet du travail du sol sur la productivité de différentes provenances de Jatropha curcas

    Directory of Open Access Journals (Sweden)

    Barro Lamine

    2013-05-01

    Full Text Available Jatropha curcas L. (JCL, an oleaginous species traditionally used as live fence, is massively planted in Africa to produce biofuel. However, the influence of many factors on its productivity remains scientifically unknown. This study aimed to assess the effect of subsoiling (factor 1 : subsoiling and control and plant material provenance (factor 2 : Casamance and Diobass on its development and productivity. The results have shown two years after planting that plant provenance had a significant effect on growth variables, plant above ground architecture and fruits number. The Casamance provenance has generally produced the highest values. Subsoiling did not have a significant effect on most of the studied variables, except for low primary branches number and fruiting branches number. Even more, subsoiling appeared to enhance JCL growth. These results have allowed to understand the importance of provenances but also of soil preparation on the performances of JCL and to identify priority areas for research.

  5. LA-ICP-MS as Tool for Provenance Analyses in Arctic Marine Sediments

    Science.gov (United States)

    Wildau, Antje; Garbe-Schönberg, Dieter

    2015-04-01

    The hydraulic transport of sediments is a major geological process in terrestrial and marine systems and is responsible for the loss, redistribution and accumulation of minerals. Provenance analyses are a powerful tool for assessing the origin and dispersion of material in ancient and modern fluvial and marine sediments. Provenance-specific heavy minerals (e.g., zircon, rutile, tourmaline) can therefore be used to provide valuable information on the formation of ore deposits (placer deposits), and the reconstruction of paleogeography, hydrology, climate conditions and developments. The application of provenances analyses for the latter reason is of specific interest, since there is need for research on the progressing climate change, and heavy minerals represent good proxies for the evaluation of recent and past changes in the climate. The study of these fine particles provides information about potential regional or long distance transport paths, glacial / ice drift and current flows, freezing and melting events as well as depositional centers for the released sediments. Classic methods applied for provenance analyses are mapping of the presence / absence of diagnostic minerals, their grain size distribution, modal mineralogy and the analysis of variations in ratio of two or more heavy minerals. Electron microprobe has been established to discover changes in mineral chemistry of individual mineral phases, which can indicate fluctuations or differences in the provenance. All these methods bear the potential of high errors that lower the validity of the provenance analyses. These are for example the misclassification of mineral species due to undistinguishable optical properties or the limitations in the detection / variations of trace elements using the election microprobe. For this case study, marine sediments from the Arctic Ocean have been selected to test if LA-ICP-MS can be established as a key technique for precise and reliable provenance analyses. The Laptev

  6. ISO TC211 standards on Provenance for Earth science

    Science.gov (United States)

    Di, L.; Deng, M.

    2014-12-01

    Data provenance, also called lineage, records the derivation history of a data product. The history could include the algorithms used, the process steps taken, the computing environment run, data sources input to the processes, the organization/person responsible for the product, etc. Provenance provides important information to data users for them to determine the usability and reliability of the product. In the science domain, the data provenance is especially important since scientists need to use the information to determine the scientific validity of a data product and to decide if such a product can be used as the basis for further scientific analysis. Provenance is a kind of metadata. In Earth science domain, the International Organization for Standardization (ISO) Technical Committee 211 (ISO TC 211) have set geospatial metadata standards for geospatial data, including ISO 19115:2003-Metadata, ISO 19115-2:2009-Metadata-Part 2: Extensions for imagery and gridded data, and ISO 19115-1:2014 - Metadata -- Part 1: Fundamentals. ISO 19115 and ISO 19115-1 define the fundamental metadata for documenting geospatial data products, and ISO 19115-2 provides additional metadata classes for imagery and gridded data. ISO 19115-1:2014 is the revised version of ISO 19115:2003. ISO 19115 and ISO 19115-1 define fundamental lineage information classes and subclasses. They miss some key information classes needed for documenting the provenance in the Web service environment, such as the running environment, the algorithms, and software executables. However, ISO 19115-2 extends the lineage model in ISO 19115 and provides additional metadata classes needed for documenting provenance information. The combination of lineage models in ISO 19115 and ISO 19115-2 provides a comprehensive provenance information model needed for the web service environment. Currently the ISO Provence standard is not compatible with W3C Prov standard. The revision of ISO 19115-2 will be started in

  7. Provenance-based refresh in data-oriented workflows

    KAUST Repository

    Ikeda, Robert

    2011-01-01

    We consider a general workflow setting in which input data sets are processed by a graph of transformations to produce output results. Our goal is to perform efficient selective refresh of elements in the output data, i.e., compute the latest values of specific output elements when the input data may have changed. We explore how data provenance can be used to enable efficient refresh. Our approach is based on capturing one-level data provenance at each transformation when the workflow is run initially. Then at refresh time provenance is used to determine (transitively) which input elements are responsible for given output elements, and the workflow is rerun only on that portion of the data needed for refresh. Our contributions are to formalize the problem setting and the problem itself, to specify properties of transformations and provenance that are required for efficient refresh, and to provide algorithms that apply to a wide class of transformations and workflows. We have built a prototype system supporting the features and algorithms presented in the paper. We report preliminary experimental results on the overhead of provenance capture, and on the crossover point between selective refresh and full workflow recomputation. © 2011 ACM.

  8. Computational provenance in hydrologic science: a snow mapping example.

    Science.gov (United States)

    Dozier, Jeff; Frew, James

    2009-03-13

    Computational provenance--a record of the antecedents and processing history of digital information--is key to properly documenting computer-based scientific research. To support investigations in hydrologic science, we produce the daily fractional snow-covered area from NASA's moderate-resolution imaging spectroradiometer (MODIS). From the MODIS reflectance data in seven wavelengths, we estimate the fraction of each 500 m pixel that snow covers. The daily products have data gaps and errors because of cloud cover and sensor viewing geometry, so we interpolate and smooth to produce our best estimate of the daily snow cover. To manage the data, we have developed the Earth System Science Server (ES3), a software environment for data-intensive Earth science, with unique capabilities for automatically and transparently capturing and managing the provenance of arbitrary computations. Transparent acquisition avoids the scientists having to express their computations in specific languages or schemas in order for provenance to be acquired and maintained. ES3 models provenance as relationships between processes and their input and output files. It is particularly suited to capturing the provenance of an evolving algorithm whose components span multiple languages and execution environments.

  9. K/Ar geochronology as a tool for tracing dust provenance in the Southern Hemisphere

    Science.gov (United States)

    Pu, J.; Koffman, B. G.; Recasens, C.; Hemming, S. R.; Kaplan, M. R.; Gombiner, J. H.; Boswell, S.; Williams, T.

    2015-12-01

    Determining the sources and transport pathways of dust can provide a better understanding of past atmospheric circulation and give insight into nutrient and radiative effects on the climate system. Mineralogy and radiogenic isotope chemistry using strontium (Sr) and neodymium (Nd) have been able to constrain sources of dust but are not sufficient to distinguish among important potential source areas in the Southern Hemisphere. The K/Ar isotope system can improve our ability to infer dust provenance because it can discriminate between sources that have similar crustal residence ages but different subsequent tectonothermal histories. To assess K/Ar ages as a provenance tool, we measured radiogenic argon concentrations of samples from potential dust sources such as glaciogenic sediments in Patagonia and New Zealand. Provenance ages from Patagonian sediments cluster around 70 Ma with a range from 33.2 ± 0.4 Ma to 120 ± 3 Ma, and those from New Zealand sediments cluster around 160 Ma with a range from 125 ± 1 Ma to 191 ± 2 Ma, showing that K/Ar geochronology can discriminate between these two source areas and improve upon previous provenance studies. In addition, as a proof of concept we made a case study of a sedimentary time series from core TN057-6 on the Agulhas Ridge in the southeast Atlantic Ocean as well as a set of Holocene and glacial samples from four cores along the SE African margin. We found that K/Ar provenance ages of the <5μm terrigenous material from TN057-6 are best explained as the result of mixing of sediments transported from Patagonia and Africa-derived sediments delivered by the Agulhas Current. The K/Ar method was also able to show different sediment provenance between glacial and interglacial times, with a dominant Patagonian signature during glacial intervals. Ongoing work aims to characterize additional Southern Hemisphere dust sources, including the ice-free regions of Antarctica, and apply the K/Ar provenance tool to dust in Antarctic

  10. Provenance in Data Interoperability for Multi-Sensor Intercomparison

    Science.gov (United States)

    Lynnes, Chris; Leptoukh, Greg; Berrick, Steve; Shen, Suhung; Prados, Ana; Fox, Peter; Yang, Wenli; Min, Min; Holloway, Dan; Enloe, Yonsook

    2008-01-01

    As our inventory of Earth science data sets grows, the ability to compare, merge and fuse multiple datasets grows in importance. This requires a deeper data interoperability than we have now. Efforts such as Open Geospatial Consortium and OPeNDAP (Open-source Project for a Network Data Access Protocol) have broken down format barriers to interoperability; the next challenge is the semantic aspects of the data. Consider the issues when satellite data are merged, cross-calibrated, validated, inter-compared and fused. We must match up data sets that are related, yet different in significant ways: the phenomenon being measured, measurement technique, location in space-time or quality of the measurements. If subtle distinctions between similar measurements are not clear to the user, results can be meaningless or lead to an incorrect interpretation of the data. Most of these distinctions trace to how the data came to be: sensors, processing and quality assessment. For example, monthly averages of satellite-based aerosol measurements often show significant discrepancies, which might be due to differences in spatio- temporal aggregation, sampling issues, sensor biases, algorithm differences or calibration issues. Provenance information must be captured in a semantic framework that allows data inter-use tools to incorporate it and aid in the intervention of comparison or merged products. Semantic web technology allows us to encode our knowledge of measurement characteristics, phenomena measured, space-time representation, and data quality attributes in a well-structured, machine-readable ontology and rulesets. An analysis tool can use this knowledge to show users the provenance-related distrintions between two variables, advising on options for further data processing and analysis. An additional problem for workflows distributed across heterogeneous systems is retrieval and transport of provenance. Provenance may be either embedded within the data payload, or transmitted

  11. Provenance of the upper Miocene-Pliocene Red Clay deposits of the Chinese loess plateau

    Science.gov (United States)

    Nie, Junsheng; Peng, Wenbin; Möller, Andreas; Song, Yougui; Stockli, Daniel F.; Stevens, Thomas; Horton, Brian K.; Liu, Shanpin; Bird, Anna; Oalmann, Jeffrey; Gong, Hujun; Fang, Xiaomin

    2014-12-01

    A clear understanding of the provenance of late Cenozoic Chinese loess and the underlying Red Clay deposits will shed light on the history and mechanisms of Asian aridification. Although much progress has been made in understanding the source of Quaternary loess on the Chinese Loess Plateau (CLP), the provenance of the underlying upper Miocene-Pliocene Red Clay sequence is largely unknown. Here we present the first provenance history of the Red Clay sequence based on zircon U-Pb ages from the central CLP. Visual and statistical analyses of the U-Pb age populations and comparison with results from potential source regions reveals that (1) the lowermost Red Clay of the late Miocene (depositional age of ∼8 Ma) is likely sourced from the nearby Liupan Mountains and the Qaidam Basin; (2) the middle Red Clay (5.5-4 Ma) of the early-mid Pliocene is sourced mainly from the Taklamakan desert, transported via lower-level westerly winds; (3) the upper Red Clay of the late Pliocene (∼3 Ma) is sourced from mixed areas, although western source materials from middle-northern Tibetan plateau (including Qaidam Desert sediments and materials eroded from the Qilian Mountains) sediments appear to dominate; and (4) the Quaternary loess is also sourced from mixed source regions, albeit with dominant northern CLP proximal desert sediments transported via winter monsoon winds, which in turn may be transported from mountain source regions of the northeastern Tibet and Gobi Altai via major river systems. This long term shift in sources suggests a progressive eastward aridification during the Pliocene in Asia with the specific timing of provenance shifts synchronous with large-scale climatic transitions and Tibetan uplift, demonstrating that Asian desertification is controlled by both factors.

  12. CAMRAD - COMPUTER AIDED MATERIAL REVIEW AUTOMATED DISPOSITION SYSTEM

    Science.gov (United States)

    Hanna, T. L.

    1994-01-01

    The basic function of a manufacturer's production support engineering unit is to identify, document, and dispose of hardware that does not conform to drawing requirements. CAMRAD, a program designed for rapid input and retrieval of all data used in engineering-to-manufacturing support operations, aids the engineer by automating the material review disposition process. Before CAMRAD, material review record searches were manual. The time spent searching through old documents precluded the timely disposition of new material reviews. CAMRAD facilitates the research of material review histories and provides for the efficient processing of material review documents. Three SmartWare project files control the operation of CAMRAD. The project file CAMRAD initializes variables for the other project files and specifies the pathing of the CAMRAD program, database files, and document files. The project file DATARAD controls all data management functions. The database consists of individual files containing all records of specific hardware discrepancies for a given part number. There are four basic avenues for records searches: part serial number, feature, Material Review (MR) number, and non-conformance. WORDRAD is the project file which controls the management of document files created when processing a material review disposition. Given a material review report identifying a defective hardware item, the production support engineer can use CAMRAD to quickly search the database for any history of the same problem, find out how well the problem has been documented, and create appropriate documentation for this latest occurrence. CAMRAD is written in the Smart Programming Language and is designed to run on IBM PC compatibles with the SmartWare v. 3.1 software package available from Informix Software. CAMRAD was developed in 1987. SmartWare is a registered trademark of Informix Software, Inc. IBM PC is a registered trademark of International Business Machines Corporation.

  13. From Observation to Impacts: Provenance for Earth Science Resources

    Science.gov (United States)

    Hua, H.; Tilmes, C.; Fox, P. A.; Zednik, S.; Duggan, B.; Aulenbach, S.; Wilson, B. D.; Manipon, G. J. M.; Privette, A. P.

    2014-12-01

    NASA's Earth Science Data Systems Working Group (ESDSWG) on Provenance is working on a provenance specification for use in Earth science data systems to capture, consume, and interpret the end-to-end data life cycle information. Based on W3C PROV, this Earth Science extension can be used as an interoperable specification for representing Earth science resources that includes observations by instruments, data producers, data processing systems, data archive centers, data users, analysis findings, and societal impacts. NASA is participating in the Big Earth Data Initiative (BEDI) and also leading a related Climate Data Initiative (CDI) effort. Under CDI, NASA is also working with the U.S. Global Change Research Program (USGCRP) and the U.S. Group on Earth Observations (USGEO) to identify and make interoperable relevant data from multiple interagency sources. These interagency efforts will improve the discoverability, accessibility, and usability of Federal data and information products derived from civil Earth observations. We will present our progress to develop a provenance specification for representing Earth science resources from observation to impacts and how it can be used to support these initiatives. We will show how it can be used in earth science data systems to automatically capture, consume, and interpret provenance information using semantic technologies.

  14. Scab susceptibility of a provenance collection of pecan

    Science.gov (United States)

    Scab (caused by Fusicladium effusum) is the most economically destructive disease of pecan in the Southeast US. Epidemics are favored by rainfall and high humidity. A provenance collection of ~950 pecan trees from 19 locations representing the native range of the species is located in Byron, Georgia...

  15. Towards automatic capturing of semi-structured process provenance

    NARCIS (Netherlands)

    Wombacher, Andreas; Huq, M.R.; Cudré-Mauroux, Philippe; Ceravolo, Paolo; Gasevic, Dragan

    2013-01-01

    Often data processing is not implemented by a workflow system or an integration application but is performed manually by humans along the lines of a more or less specified procedure. Collecting provenance information in semi-structured processes can not be automated. Further, manual collection of

  16. Longleaf pine grown in Virginia: a provenance test

    Science.gov (United States)

    Kurt H. Johnsen; Jerre L. Creighton; Chris A. Maier

    2015-01-01

    In 2006 the Virginia Department of Forestry established a longleaf pine (Pinus palustris Mill.) provenance test on three sites near Richmond, VA, near the most northern native range of longleaf pine. Seedlings were grown in containers at the Virginia Department of Forestry New Kent Forestry Center during the 2005 growing season.

  17. Towards Automatic Capturing of Manual Data Processing Provenance

    NARCIS (Netherlands)

    Wombacher, Andreas; Huq, M.R.

    2011-01-01

    Often data processing is not implemented by a work ow system or an integration application but is performed manually by humans along the lines of a more or less specified procedure. Collecting provenance information during manual data processing can not be automated. Further, manual collection of

  18. Using provenance to manage knowledge of in silico experiments.

    Science.gov (United States)

    Stevens, Robert; Zhao, Jun; Goble, Carole

    2007-05-01

    This article offers a briefing in one of the knowledge management issues of in silico experimentation in bioinformatics. Recording of the provenance of an experiment-what was done; where, how and why, etc. is an important aspect of scientific best practice that should be extended to in silico experimentation. We will do this in the context of eScience which has been part of the move of bioinformatics towards an industrial setting. Despite the computational nature of bioinformatics, these analyses are scientific and thus necessitate their own versions of typical scientific rigour. Just as recording who, what, why, when, where and how of an experiment is central to the scientific process in laboratory science, so it should be in silico science. The generation and recording of these aspects, or provenance, of an experiment are necessary knowledge management goals if we are to introduce scientific rigour into routine bioinformatics. In Silico experimental protocols should themselves be a form of managing the knowledge of how to perform bioinformatics analyses. Several systems now exist that offer support for the generation and collection of provenance information about how a particular in silico experiment was run, what results were generated, how they were generated, etc. In reviewing provenance support, we will review one of the important knowledge management issues in bioinformatics.

  19. Provenance variation in growth and genetic potential of Aquilaria ...

    African Journals Online (AJOL)

    ARUN KUMAR

    2015-06-17

    Jun 17, 2015 ... The genetic advance was high for shoot length followed by number of branches which indicated the reliability of these two parameters for inclusion in future improvement programme. Key words: Aquilaria malaccensis, provenances, variability, heritability, genetic divergence, intra and inter cluster distance.

  20. Representing distributed systems using the Open Provenance Model

    NARCIS (Netherlands)

    Groth, P.T.; Moreau, L

    2011-01-01

    From the World Wide Web to supply chains and scientific simulations, distributed systems are a widely used and important approach to building computational systems. Tracking provenance within these systems is crucial for determining the trustworthiness of data they produce, troubleshooting problems,

  1. Combining User Reputation and Provenance Analysis for Trust Assessment

    NARCIS (Netherlands)

    Ceolin, D.; Groth, P.T.; Maccatrozzo, V.; Fokkink, W.J.; van Hage, W.R.; Nottamkandath, A.

    2016-01-01

    Trust is a broad concept that in many systems is often reduced to user reputation alone. However, user reputation is just one way to determine trust. The estimation of trust can be tackled from other perspectives as well, including by looking at provenance. Here, we present a complete pipeline for

  2. a case of biopsy proven lupus nephritis in Tanzania

    African Journals Online (AJOL)

    We describe a case of a 30 years old female patient who presented with nephrotic syndrome and impaired renal function which was diagnosed to have systemic lupus erythematosus (SLE) with lupus nephritis. This is the first biopsy proven lupus nephritis in Tanzania. SLE is common among females and is reported be more ...

  3. An extensible framework for provenance in human terrain visual analytics.

    Science.gov (United States)

    Walker, Rick; Slingsby, Aiden; Dykes, Jason; Xu, Kai; Wood, Jo; Nguyen, Phong H; Stephens, Derek; Wong, B L William; Zheng, Yongjun

    2013-12-01

    We describe and demonstrate an extensible framework that supports data exploration and provenance in the context of Human Terrain Analysis (HTA). Working closely with defence analysts we extract requirements and a list of features that characterise data analysed at the end of the HTA chain. From these, we select an appropriate non-classified data source with analogous features, and model it as a set of facets. We develop ProveML, an XML-based extension of the Open Provenance Model, using these facets and augment it with the structures necessary to record the provenance of data, analytical process and interpretations. Through an iterative process, we develop and refine a prototype system for Human Terrain Visual Analytics (HTVA), and demonstrate means of storing, browsing and recalling analytical provenance and process through analytic bookmarks in ProveML. We show how these bookmarks can be combined to form narratives that link back to the live data. Throughout the process, we demonstrate that through structured workshops, rapid prototyping and structured communication with intelligence analysts we are able to establish requirements, and design schema, techniques and tools that meet the requirements of the intelligence community. We use the needs and reactions of defence analysts in defining and steering the methods to validate the framework.

  4. Growth and quality of Grevillea robusta provenances in Ruhande ...

    African Journals Online (AJOL)

    user

    seven Queensland (Australia) provenances and one land race on an oxisol at Ruhande Arboretum,. Butare, Rwanda was carried out. The species is the commonest on farm tree species in Rwandan agroecosystems and serves many functions. Wood productivity has been observed to decline when tree germplasm used is ...

  5. Facilitating Fine Grained Data Provenance using Temporal Data Model

    NARCIS (Netherlands)

    Huq, M.R.; Wombacher, Andreas; Apers, Peter M.G.

    2010-01-01

    E-science applications use fine grained data provenance to maintain the reproducibility of scientific results, i.e., for each processed data tuple, the source data used to process the tuple as well as the used approach is documented. Since most of the e-science applications perform on-line

  6. Provenance of the Late Neogene Siwalik sandstone, Kumaun ...

    Indian Academy of Sciences (India)

    An understanding about lithology, tectonics and unroofing history of provenance is mostly drawn from ... history of Late Neogene Siwalik sandstone of the ...... and Tibet: Mountain Roots to Mountain Tops (eds). Macfarlane A, Sorkhabi R B and Quade (Colorado: Boulder), J. Geol. Soc. Am. Spec. Paper, pp. 239–256.

  7. Outcome of biopsy proven minimal change disease (MCD) in children

    African Journals Online (AJOL)

    Background and Objectives: MCD is the most common histological sub-type of nephrotic syndrome with variable clinical course in children. There are limited studies in literature on the outcome of biopsy proven MCD. The objective was to look at the treatment response and outcome of patients with MCD treated at a tertiary ...

  8. Provenances and fertilizer on early growth cedar seedlings

    Directory of Open Access Journals (Sweden)

    Marcio Carlos Navroski

    2016-03-01

    Full Text Available The aim of the study was to evaluate the initial development of different provenances and the influence of base fertilizer and coverage on growth of Cedrela fissilis seedlings. Provenances of seeds were collected in Lapa, PR, Fernandes Pinheiro, PR and Itaara, RS. After germination, the seedlings were transplanted to plastic bags of 500 cm³, filled with commercial substrate. Total height (h, stem diameter (sd, and ratio h/sd seedlings were measured after 150 days of transplanting. Seedlings of Fernandes Pinheiro received basic fertilization after transplantation (0, 2, 4, 6 and 8 g dm-3  Osmocote® and cover (3 and 6 g L-1, respectively, of Peter’s® and urea. The provenance and doses of controlled-release fertilizer influenced early development of Cedrela fissilis seedlings. Itaara provenance showed better seedlings growth. Cedar seedlings showed good growth when incorporated into the substrate 5 g dm-3 Osmocote® and, in addition, applied in topdressing 3 g L-1 of Peter’s®. Urea topdressing is rarely recommended for cedar seedlings.

  9. a case of biopsy proven lupus nephritis in Tanzania

    African Journals Online (AJOL)

    65001, Dar es Salaam, Tanzania. Abstract: We describe a case of a 30 years old female patient who presented with nephrotic syndrome and impaired renal function diagnosed to have systemic lupus erythematosus (SLE). This is the first biopsy proven lupus nephritis in Tanzania. SLE is common among females and is ...

  10. Representing annotation compositionality and provenance for the Semantic Web.

    Science.gov (United States)

    Livingston, Kevin M; Bada, Michael; Hunter, Lawrence E; Verspoor, Karin

    2013-01-01

    Though the annotation of digital artifacts with metadata has a long history, the bulk of that work focuses on the association of single terms or concepts to single targets. As annotation efforts expand to capture more complex information, annotations will need to be able to refer to knowledge structures formally defined in terms of more atomic knowledge structures. Existing provenance efforts in the Semantic Web domain primarily focus on tracking provenance at the level of whole triples and do not provide enough detail to track how individual triple elements of annotations were derived from triple elements of other annotations. We present a task- and domain-independent ontological model for capturing annotations and their linkage to their denoted knowledge representations, which can be singular concepts or more complex sets of assertions. We have implemented this model as an extension of the Information Artifact Ontology in OWL and made it freely available, and we show how it can be integrated with several prominent annotation and provenance models. We present several application areas for the model, ranging from linguistic annotation of text to the annotation of disease-associations in genome sequences. With this model, progressively more complex annotations can be composed from other annotations, and the provenance of compositional annotations can be represented at the annotation level or at the level of individual elements of the RDF triples composing the annotations. This in turn allows for progressively richer annotations to be constructed from previous annotation efforts, the precise provenance recording of which facilitates evidence-based inference and error tracking.

  11. Strontium isotopes in otoliths of a non-migratory fish (slimy sculpin): Implications for provenance studies

    Science.gov (United States)

    Brennan, Sean R.; Fernandez, Diego P.; Zimmerman, Christian E.; Cerling, Thure E.; Brown, Randy J.; Wooller, Matthew J.

    2015-01-01

    Heterogeneity in 87Sr/86Sr ratios of river-dissolved strontium (Sr) across geologically diverse environments provides a useful tool for investigating provenance, connectivity and movement patterns of various organisms and materials. Evaluation of site-specific 87Sr/86Sr temporal variability throughout study regions is a prerequisite for provenance research, but the dynamics driving temporal variability are generally system-dependent and not accurately predictable. We used the time-keeping properties of otoliths from non-migratory slimy sculpin (Cottus cognatus) to evaluate multi-scale 87Sr/86Sr temporal variability of river waters throughout the Nushagak River, a large (34,700 km2) remote watershed in Alaska, USA. Slimy sculpin otoliths incorporated site-specific temporal variation at sub-annual resolution and were able to record on the order of 0.0001 changes in the 87Sr/86Sr ratio. 87Sr/86Sr profiles of slimy sculpin collected in tributaries and main-stem channels of the upper watershed indicated that these regions were temporally stable, whereas the Lower Nushagak River exhibited some spatio-teporal variability. This study illustrates how the behavioral ecology of a non-migratory organism can be used to evaluate sub-annual 87Sr/86Sr temporal variability and has broad implications for provenance studies employing this tracer.

  12. Provenance for Runtime Workflow Steering and Validation in Computational Seismology

    Science.gov (United States)

    Spinuso, A.; Krischer, L.; Krause, A.; Filgueira, R.; Magnoni, F.; Muraleedharan, V.; David, M.

    2014-12-01

    Provenance systems may be offered by modern workflow engines to collect metadata about the data transformations at runtime. If combined with effective visualisation and monitoring interfaces, these provenance recordings can speed up the validation process of an experiment, suggesting interactive or automated interventions with immediate effects on the lifecycle of a workflow run. For instance, in the field of computational seismology, if we consider research applications performing long lasting cross correlation analysis and high resolution simulations, the immediate notification of logical errors and the rapid access to intermediate results, can produce reactions which foster a more efficient progress of the research. These applications are often executed in secured and sophisticated HPC and HTC infrastructures, highlighting the need for a comprehensive framework that facilitates the extraction of fine grained provenance and the development of provenance aware components, leveraging the scalability characteristics of the adopted workflow engines, whose enactment can be mapped to different technologies (MPI, Storm clusters, etc). This work looks at the adoption of W3C-PROV concepts and data model within a user driven processing and validation framework for seismic data, supporting also computational and data management steering. Validation needs to balance automation with user intervention, considering the scientist as part of the archiving process. Therefore, the provenance data is enriched with community-specific metadata vocabularies and control messages, making an experiment reproducible and its description consistent with the community understandings. Moreover, it can contain user defined terms and annotations. The current implementation of the system is supported by the EU-Funded VERCE (http://verce.eu). It provides, as well as the provenance generation mechanisms, a prototypal browser-based user interface and a web API built on top of a NoSQL storage

  13. Impacts of drought on mineral macro- and microelements in provenances of beech (Fagus sylvatica L.) seedlings.

    Science.gov (United States)

    Peuke, Andreas D; Rennenberg, Heinz

    2011-02-01

    Beech seedlings originating from 11 German provenances with different climatic conditions were grown in pots and cultivated in a greenhouse. The composition of macro- and microelements in roots, axes and leaves was measured after half of the seedlings were subjected to a simulated summer drought. The recently described sensitivity of these provenances to drought was compared with drought-mediated changes in the elemental and ionic composition in organs of the seedlings; in addition, partitioning between roots and shoots was evaluated. A number of element concentrations were decreased in roots due to drought (K 94% of control, Mg 94%, Mn 75% and Zn 85%). However, chloride concentration increased in all organs (115-125%) and was the only element affected in leaves. Some changes in ionome can be related to sensitivity of provenances, but it is difficult to decide whether these changes are a result of, or a reason for, drought tolerance or sensitivity. Observed increases in chloride concentration in all plant parts of drought-treated beech seedlings can be explained by its function in charge balance, in particular since the level of phosphate was reduced. As a result of chloride accumulation, the sum of added charges of anions (and cations) in water extracts of leaf and root material was similar between drought and control plants. Since only the partitioning of Ca and Al (both only in axis) as well as Mn was affected and other elements (together with previously observed effects on C, N, S and P) remained unaffected by drought in all provenances, it can be concluded that direct effects by means of mass flow inhibition in xylem and phloem are unlikely. Secondary effects, for example on the pH of transport sap and the apoplastic space, cannot be excluded from the present study. These effects may affect partitioning between the apoplast and symplast and therefore may be significant for drought sensitivity.

  14. [Study on Provenance of Kraak Porcelains from "Nan'ao I" Shipwreck].

    Science.gov (United States)

    Du, Jing-nan; Chen, Yue; Li, Nai-sheng; Ming, Chao-fang; Zhu, Jian; Luo, Wu-gan

    2015-06-01

    The "Kraak Porcelain" was a kind of Blue and White Porcelain which exported from China to Europe in Ming and Qing period. The study of Kraak Porcelain is a focus issue in international field of porcelain research. In 2007, the discovery of "Nan'ao I" Shipwreck of Ming Dynasty and the porcelains loaded in it, provided precious materials for the research on Kraak Porcelain. In this paper, we explored the provenance of 10 Kraak Porcelain samples from Nan'ao I, using both traditional visual method and WDXRF.

  15. Humic acid provenance influence to the adsorption capacity in uranium and thorium removal

    Science.gov (United States)

    Prasetyo, E.

    2018-01-01

    It is common knowledge that humic acid is organic compound without certain chemical composition since it is derived from different organic materials. Further this raises question whether the different humic acid sample used could lead to different adsorbent properties e.g. adsorption capacity. To address the problem, this paper is aimed to clarify the relation between the provenances of humic acid and synthesized adsorbent properties especially adsorption capacities by quantitative and qualitative functional groups determination including discussion on their effect to the metal ion adsorption mechanism using three humic acid samples. Two commercial samples were derived from recent compost while the other extracted from tertiary carbonaceous mudstone strata.

  16. Towards Provenance and Traceability in CRISTAL for HEP

    Science.gov (United States)

    Shamdasani, Jetendr; Branson, Andrew; McClatchey, Richard

    2014-06-01

    This paper discusses the CRISTAL object lifecycle management system and its use in provenance data management and the traceability of system events. This software was initially used to capture the construction and calibration of the CMS ECAL detector at CERN for later use by physicists in their data analysis. Some further uses of CRISTAL in different projects (CMS, neuGRID and N4U) are presented as examples of its flexible data model. From these examples, applications are drawn for the High Energy Physics domain and some initial ideas for its use in data preservation HEP are outlined in detail in this paper. Currently investigations are underway to gauge the feasibility of using the N4U Analysis Service or a derivative of it to address the requirements of data and analysis logging and provenance capture within the HEP long term data analysis environment.

  17. Towards Provenance and Traceability in CRISTAL for HEP

    CERN Document Server

    Shamdasani, Jetendr; McClatchey, Richard

    2014-01-01

    This paper discusses the CRISTAL object lifecycle management system and its use in provenance data management and the traceability of system events. This software was initially used to capture the construction and calibration of the CMS ECAL detector at CERN for later use by physicists in their data analysis. Some further uses of CRISTAL in different projects (CMS, neuGRID and N4U) are presented as examples of its flexible data model. From these examples, applications are drawn for the High Energy Physics domain and some initial ideas for its use in data preservation HEP are outlined in detail in this paper. Currently investigations are underway to gauge the feasibility of using the N4U Analysis Service or a derivative of it to address the requirements of data and analysis logging and provenance capture within the HEP long term data analysis environment.

  18. Provenance, tectonic setting and source-area weathering of the ...

    Indian Academy of Sciences (India)

    The geochemical study of siliciclastic rocks from the Lower Cambrian of Parahio Valley has been studied to describe the provenance, chemical weathering and tectonic setting. The K ₂O/Al ₂O₃ ratio and positivecorrelation of Co (r = 0.85), Ni (r = 0.86), Zn (r = 0.82), Rb (r = 0.98) with K₂O reflects that the presence of clay ...

  19. Provenance of the lower Triassic bunter sandstone formation

    DEFF Research Database (Denmark)

    Olivarius, Mette; Weibel, Rikke; Friis, Henrik

    2017-01-01

    Zircon U–Pb geochronometry, heavy mineral analyses and conventional seismic reflection data were used to interpret the provenance of the Lower Triassic Bunter Sandstone Formation. The succession was sampled in five Danish wells in the northern part of the North German Basin. The results show...... in the platform area and marginal basin area, but the complex sand-body architecture makes it difficult to predict the reservoir quality. Continue reading full article...

  20. Perfonnance ,of Provenances of Sesbania macrontha at Gairo ...

    African Journals Online (AJOL)

    of assessment to get tree survival. Root-collar diameter of all the surviving trees in th~ samp~~ lot was measured using a micro calliper to the. P d ' nearest 0.01 cm. Height was measure usmg the digital measring pole to the nearest .0.01 ,m. provenances of SisbiUJia mai:rantha 29. DeterQlination of;tree biomass:" ~ .

  1. Fuzzy reasoning of accident provenance in pervasive healthcare monitoring systems.

    Science.gov (United States)

    Wang, Yongli; Hu, Xiaohua

    2013-11-01

    In pervasive healthcare monitoring environments, data provenance, as one metadata, can help people analyze the reasons for medical accidents that are generated by complex events. This reasoning processing often encounters inaccurate time and irreversible reasoning problems. How to solve the uncertain process and fuzzy transformation time presents many challenges to the study of data provenance. In this paper, we propose a backward derivation model with the provenance semantic, backward fuzzy time reasoning net (BFTRN), to solve these two problems. We design a backward reasoning algorithm motivated by time automation theory based on this model. With regard to given life-critical alarms and some constraints, it cannot only derive all evolution paths and the possibility distribution of paths from historical information, but also efficiently compute the value of fuzzy time function for each transition of lift-critical complex alarms in the healthcare monitoring system. We also analyze the properties of BFTRN model in this paper. Experiments on real dataset show that the proposed model is efficient.

  2. Rate of occult specimen provenance complications in routine clinical practice.

    Science.gov (United States)

    Pfeifer, John D; Liu, Jingxia

    2013-01-01

    Occult specimen provenance complications (SPCs), which occur when there is an absence of any direct or indirect indication that a specimen switch or contamination may have occurred, constitute a significant patient safety and medical-legal problem because they can lead to misdiagnosis. However, the rate at which occult SPCs occur is unknown because, by definition, this category of errors is not identified by standard laboratory practices. In this study, we evaluated a data set comprising almost 13,000 prostate biopsies that were prospectively tested for specimen provenance errors as part of routine clinical practice. The frequency of occult type 1 errors (a complete transposition between patients) and type 2 errors (contamination of the patient's tissue with 1 or more unrelated patients) was 0.26% and 0.67%, respectively; every urology practice setting and surgical pathology laboratory type with a representative sample size experienced at least 1 type 1 and 1 type 2 error during the study period. Overall, the mean frequency of SPCs across practice settings was 0.22% for type 1 errors and 1.69% for type 2 errors. The type 1 rate showed no correlation with a surgical pathology laboratory setting or urologic practice group setting; the type 2 rate correlated solely with a surgical pathology laboratory setting. The occult SPC rate in this limited data set provides an estimate of the scope of the problem of potential misdiagnosis as a result of occult specimen provenance errors in routine clinical practice.

  3. Provenance Representation in the Global Change Information System (GCIS)

    Science.gov (United States)

    Tilmes, Curt

    2012-01-01

    Global climate change is a topic that has become very controversial despite strong support within the scientific community. It is common for agencies releasing information about climate change to be served with Freedom of Information Act (FOIA) requests for everything that led to that conclusion. Capturing and presenting the provenance, linking to the research papers, data sets, models, analyses, observation instruments and satellites, etc. supporting key findings has the potential to mitigate skepticism in this domain. The U.S. Global Change Research Program (USGCRP) is now coordinating the production of a National Climate Assessment (NCA) that presents our best understanding of global change. We are now developing a Global Change Information System (GCIS) that will present the content of that report and its provenance, including the scientific support for the findings of the assessment. We are using an approach that will present this information both through a human accessible web site as well as a machine readable interface for automated mining of the provenance graph. We plan to use the developing W3C PROV Data Model and Ontology for this system.

  4. µ-XRF Analysis of Trace Elements in Lapis Lazuli-Forming Minerals for a Provenance Study.

    Science.gov (United States)

    Angelici, Debora; Borghi, Alessandro; Chiarelli, Fabrizia; Cossio, Roberto; Gariani, Gianluca; Lo Giudice, Alessandro; Re, Alessandro; Pratesi, Giovanni; Vaggelli, Gloria

    2015-04-01

    This paper presents new developments on the provenance study of lapis lazuli started by our group in 2008: during the years a multi-technique approach has been exploited to obtain minero-petrographic characterization and creation of a database considering only rock samples of known provenance. Since the final aim of the study is to develop a method to analyze archeological findings and artworks made with lapis lazuli in a completely non-invasive way, ion beam analysis techniques were employed to trace the provenance of the raw material used for the production of artifacts. Continuing this goal and focusing the analysis on determination of more significant minero-chemical markers for the provenance study of trace elements in different minerals, the method was extended with the use of micro X-ray fluorescence (µ-XRF), to test the potential of the technique for this application. The analyzes were focused on diopside and pyrite in lapis lazuli samples of known provenance (Afghanistan, Tajikistan, and Siberia). In addition, µ-XRF data were compared with micro proton-induced X-ray emission (µ-PIXE) results to verify the agreement between the two databases and to compare the analytical performance of both techniques for this application.

  5. A Provenance Model for Real-Time Water Information Systems

    Science.gov (United States)

    Liu, Q.; Bai, Q.; Zednik, S.; Taylor, P.; Fox, P. A.; Taylor, K.; Kloppers, C.; Peters, C.; Terhorst, A.; West, P.; Compton, M.; Shu, Y.; Provenance Management Team

    2010-12-01

    Generating hydrological data products, such as flow forecasts, involves complex interactions among instruments, data simulation models, computational facilities and data providers. Correct interpretation of the data produced at various stages requires good understanding of how data was generated or processed. Provenance describes the lineage of a data product. Making provenance information accessible to hydrologists and decision makers not only helps to determine the data’s value, accuracy and authorship, but also enables users to determine the trustworthiness of the data product. In the water domain, WaterML2 [1] is an emerging standard which describes an information model and format for the publication of water observations data in XML. The W3C semantic sensor network incubator group (SSN-XG) [3] is producing ontologies for the description of sensor configurations. By integrating domain knowledge of this kind into the provenance information model, the integrated information model will enable water domain researchers and water resource managers to better analyse how observations and derived data products were generated. We first introduce the Proof Mark Language (PML2) [2], WaterML2 and the SSN-XG sensor ontology as the proposed provenance representation formalism. Then we describe some initial implementations how these standards could be integrated to represent the lineage of water information products. Finally we will highlight how the provenance model for a distributed real-time water information system assists the interpretation of the data product and establishing trust. Reference [1] Taylor, P., Walker, G., Valentine, D., Cox, Simon: WaterML2.0: Harmonising standards for water observation data. Geophysical Research Abstracts. Vol. 12. [2] da Silva, P.P., McGuinness, D.L., Fikes, R.: A proof markup language for semantic web services. Inf. Syst. 31(4) (2006), 381-395. [3] W3C Semantic Sensor Network Incubator Group http://www.w3.org/2005/Incubator

  6. Characterization of newfound natural luminescent properties of melamine, and development and validation of a method of high performance liquid chromatography with fluorescence detection for its determination in kitchen plastic ware.

    Science.gov (United States)

    Finete, Virginia de Lourdes Mendes; Gouvêa, Marcos Martins; Marques, Flávia Ferreira de Carvalho; Netto, Annibal Duarte Pereira

    2014-06-01

    Experimental studies of the natural photoluminescence of melamine in aqueous solutions showed that its fluorescence intensity (at 250/365 nm) was appropriated for analytical purposes. The exploitation of such melamine property provided the basis of development of a new, simple, precise and accurate method based on high performance liquid chromatography with fluorescence detection (HPLC-Fluo) to determine melamine in kitchen plastic ware following aqueous extraction using a microwave oven. Optimization of analytical parameters such as solvent composition, pH and extraction conditions led to limits of detection and quantification of melamine of 0.0081 and 0.027 μg mL(-1), respectively, with a linear range up to 10 μg mL(-1). Sample extracts fortified with melamine at three concentration levels produced an average recovery of 98±6%, which was in agreement with the results achieved with a reference HPLC-UV method. Different samples of kitchen plastic ware analyzed by the developed and optimized method showed melamine concentrations in the aqueous extract up to 17 µg mL(-1), which corresponded to 86.0 mg kg(-1) in these utensils. The results obtained indicate that the use of kitchen plastic ware made of melamine can contaminate food with this compound after heating in a microwave oven. Copyright © 2014. Published by Elsevier B.V.

  7. Pump flow estimation from pressure head and power uptake for the HeartAssist5, HeartMate II, and HeartWare VADs.

    Science.gov (United States)

    Pennings, Kim A M A; Martina, Jerson R; Rodermans, Ben F M; Lahpor, Jaap R; van de Vosse, Frans N; de Mol, Bas A J M; Rutten, Marcel C M

    2013-01-01

    The use of long-term mechanical circulatory support (MCS) for heart failure by means of implanted continuous-flow left ventricular assist devices (cf-LVADs) will increase, either to enable recovery or to provide a destination therapy. The effectiveness and user-friendliness of MCS will depend on the development of near-physiologic control strategies for which accurate estimation of pump flow is essential. To provide means for the assessment of pump flow, this study presents pump models, estimating pump flow (Q(lvad)) from pump speed (n) and pressure difference across the LVAD (Δp(lvad)) or power uptake (P). The models are evaluated for the axial-flow LVADs HeartAssist5 (HA5) and HeartMate II (HMII), and for a centrifugal pump, the HeartWare (HW). For all three pumps, models estimating Q(lvad) from Δp(lvad) only is capable of describing pump behavior under static conditions. For the axial pumps, flow estimation from power uptake alone was not accurate. When assuming an increase in pump flow with increasing power uptake, low pump flows are overestimated in these pumps. Only for the HW, pump flow increased linearly with power uptake, resulting in a power-based pump model that estimates static pump flow accurately. The addition of pressure head measurements improved accuracy in the axial cf-LVAD estimation models.

  8. Archaeometric researches on the provenance of Mediterranean Archaic Phoenician and Punic pottery.

    Science.gov (United States)

    Amadori, M L; Del Vais, C; Fermo, P; Pallante, P

    2017-06-01

    The aim of this study is to setup a first chemical database that could represent the starting point for a reliable classification method to discriminate between Archaic Phoenician and Punic pottery on the base of their chemical data. This database up to now can discriminate between several different areas of production and provenance and can be applied also to unknown ceramic samples of comparable age and production areas. More than 100 ceramic fragments were involved in this research, coming from various archaeological sites having a crucial importance in the context of the Phoenician and Punic settlement in central and western Mediterranean: Carthage (Tunisia), Toscanos (South Andalusia, Spain), Sulci, Monte Sirai, Othoca, Tharros (Sardinia, Italy) and Pithecusa (Campania, Italy). Since long-time archaeologists hypothesised that Mediterranean Archaic Phoenician and Punic pottery had mainly a local or just a regional diffusion, with the exception of some particular class like transport amphorae. To verify the pottery provenance, statistical analyses were carried out to define the existence of different ceramic compositional groups characterised by a local origin or imported from other sites. The existing literature data are now supplemented by new archaeometric investigations both on Archaic Phoenician ceramics and clayey raw materials from Sardinia. Therefore, diffractometric analyses, optical microscopy observations and X-ray fluorescence analyses were performed to identify the mineralogical and chemical composition of Othoca ceramics and clayey raw material. The obtained results were then compared with own literature data concerning Phoenician and Punic pottery in order to find features related to the different ceramic productions and their provenance. Principal component analysis (PCA) and hierarchical cluster analysis (HCA) were also performed on the chemical compositional data in order to discriminate ceramic groups. A very complex situation was found

  9. Glacial to Holocene detrital flux and sediment provenance variations in the South Atlantic Southern Ocean

    Science.gov (United States)

    Noble, T. L.; Piotrowski, A. M.; Robinson, L. F.; McManus, J. F.

    2009-12-01

    Reconstructing input fluxes of detrital silicate material to the ocean through time provides insight into past atmospheric and ocean circulation pathways as well as the interaction between terrestrial and marine biogeochemical systems. The pathway of detrital input to the ocean can occur by a variety of mechanisms including riverine, aeolian, and ice rafting. Its provenance and flux may vary temporally. Constraining these inputs to the Southern Ocean is particularly important because productivity is limited by the lack of essential micronutrients such as Fe that are supplied by detritus. In this study we have combined 230Th-normalised detrital and mass fluxes with Pb, Nd and Sr isotope data measured on the silicate detrital phase as a tracer of sediment provenance to the Atlantic Sector of the Southern Ocean. The data presented compares the Last Glacial Maximum to the Holocene, from a transect of core sites that span the Subtropical Front in the north to the Southern Antarctic Polar Front. The latitudinal transect for the Holocene shows clearly defined sediment provinces that grade from predominately cratonic-derived-sediment at the northern sites, to a greater proportion of sediment with a mantle-derived chemical signature in the south. The northern signal is identified as silicate detritus sourced from southern Africa and a sediment component that may be derived from the North Atlantic. The sediment at the southern sites is derived primarily from the Scotia arc. The detrital flux decreases with distance away from the African continent towards Antarctica. Thus the Holocene pattern of sediment flux and provenance matches the known sediment source pathways and oceanic circulation in this region. The glacial flux and provenance is significantly different to the modern. There is no systematic pattern in the glacial detrital flux, unlike during the Holocene. In the northern sites, the detrital flux is similar to the Holocene at the shallower site (2000 mbsl), but

  10. Removal of natural organic dyes from wool-implications for ancient textile provenance studies

    DEFF Research Database (Denmark)

    Frei, Karin Margarita; Vanden Berghe, Ina; Frei, Robert

    2010-01-01

    Ancient wool textiles recovered from archaeological sites are in many cases originally dyed with natural organic dyestuffs from vegetable sources. These include among others woad (Isatis tinctoria L.), weld (Reseda luteola L.), and madder (Rubia tinctorum L.). These dyestuffs could be a threat to...... for the provenance of the raw material. We propose to apply this method to ancient wool textiles in which positive identification of organic dyestuff constituents by High Performance Liquid Chromatography (HPLC) was made.......Ancient wool textiles recovered from archaeological sites are in many cases originally dyed with natural organic dyestuffs from vegetable sources. These include among others woad (Isatis tinctoria L.), weld (Reseda luteola L.), and madder (Rubia tinctorum L.). These dyestuffs could be a threat...... to the use of the strontium isotopic system as a tracer for provenance studies of ancient wool, because they could potentially contaminate the signature of the textile's raw material. We present a novel method which allows for efficient removal of organic dyestuffs in wool prior to strontium isotopic...

  11. A posteriori metadata from automated provenance tracking: integration of AiiDA and TCOD.

    Science.gov (United States)

    Merkys, Andrius; Mounet, Nicolas; Cepellotti, Andrea; Marzari, Nicola; Gražulis, Saulius; Pizzi, Giovanni

    2017-11-14

    In order to make results of computational scientific research findable, accessible, interoperable and re-usable, it is necessary to decorate them with standardised metadata. However, there are a number of technical and practical challenges that make this process difficult to achieve in practice. Here the implementation of a protocol is presented to tag crystal structures with their computed properties, without the need of human intervention to curate the data. This protocol leverages the capabilities of AiiDA, an open-source platform to manage and automate scientific computational workflows, and the TCOD, an open-access database storing computed materials properties using a well-defined and exhaustive ontology. Based on these, the complete procedure to deposit computed data in the TCOD database is automated. All relevant metadata are extracted from the full provenance information that AiiDA tracks and stores automatically while managing the calculations. Such a protocol also enables reproducibility of scientific data in the field of computational materials science. As a proof of concept, the AiiDA-TCOD interface is used to deposit 170 theoretical structures together with their computed properties and their full provenance graphs, consisting in over 4600 AiiDA nodes.

  12. Delphinella Shoot Blight on Abies lasiocarpa Provenances in Norway

    Directory of Open Access Journals (Sweden)

    Venche Talgø

    2015-12-01

    Full Text Available Delphinella shoot blight (Delphinella abietis attacks true firs (Abies spp. in Europe and North America. Especially subalpine fir (A. lasiocarpa, one of the main Christmas tree species in Norway, is prone to the disease. The fungus kills current year needles, and in severe cases entire shoots. Dead needles become covered with black fruiting bodies, both pycnidia and pseudothecia. Delphinella shoot blight has mainly been a problem in humid, coastal regions in the northwestern part of Southern Norway, but, probably due to higher precipitation in inland regions during recent years, heavy attacks were found in 2011 in a field trial with 76 provenances of subalpine fir in Southeastern Norway. However, the amount of precipitation seemed less important once the disease had established in the field. Significant differences in susceptibility between provenances were observed. In general, the more bluish the foliage was, the healthier the trees appeared. The analysis of provenance means indicated that, at least for the southern range, the disease ratings were correlated with foliage color. This study also includes isolation, identification, a pathogenicity test, a seed test and electron microscopy of the wax layer on the needles. The fungus was identified based on the morphology of spores and by sequencing the Internal Transcribed Spacer (ITS regions of the ribosomal DNA. Koch’s postulates were fulfilled. The fungus was found present on newly harvested seeds and may therefore spread via international seed trade. When comparing the wax layers on green and blue needles, those of the latter were significantly thicker, a factor that may be involved in disease resistance.

  13. Capturing, Harmonizing and Delivering Data and Quality Provenance

    Science.gov (United States)

    Leptoukh, Gregory; Lynnes, Christopher

    2011-01-01

    Satellite remote sensing data have proven to be vital for various scientific and applications needs. However, the usability of these data depends not only on the data values but also on the ability of data users to assess and understand the quality of these data for various applications and for comparison or inter-usage of data from different sensors and models. In this paper, we describe some aspects of capturing, harmonizing and delivering this information to users in the framework of distributed web-based data tools.

  14. Provenance of coals recovered from the wreck of HMAV Bounty

    Energy Technology Data Exchange (ETDEWEB)

    Erskine, N.; Smith, A.H.V.; Crosdale, P.J. [Australian National Maritime Museum, Sydney, NSW (Australia)

    2008-03-15

    Coal samples from HMAV Bounty were analysed using standard techniques to shed light on their provenance. Petrographic analysis indicated they were Carboniferous, with high vitrinite and liptinite content and a mean random reflectance of vitrinite of 0.99%. Palynological analysis indicated the samples were derived from the Middle Coal Measures, Westphalian B. Combining coal rank (vitrinite reflectance), age, knowledge of seam distributions and coalfield history indicates the most like source to be the Durham Coalfield, possibly the Hutton or Low Main Seams. These coals were mined along the valley of the Wear in the latter part of the 18th century.

  15. Provenance metadata gathering and cataloguing of EFIT++ code execution

    Energy Technology Data Exchange (ETDEWEB)

    Lupelli, I., E-mail: ivan.lupelli@ccfe.ac.uk [CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB (United Kingdom); Muir, D.G.; Appel, L.; Akers, R.; Carr, M. [CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB (United Kingdom); Abreu, P. [Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, Universidade de Lisboa, 1049-001 Lisboa (Portugal)

    2015-10-15

    Highlights: • An approach for automatic gathering of provenance metadata has been presented. • A provenance metadata catalogue has been created. • The overhead in the code runtime is less than 10%. • The metadata/data size ratio is about ∼20%. • A visualization interface based on Gephi, has been presented. - Abstract: Journal publications, as the final product of research activity, are the result of an extensive complex modeling and data analysis effort. It is of paramount importance, therefore, to capture the origins and derivation of the published data in order to achieve high levels of scientific reproducibility, transparency, internal and external data reuse and dissemination. The consequence of the modern research paradigm is that high performance computing and data management systems, together with metadata cataloguing, have become crucial elements within the nuclear fusion scientific data lifecycle. This paper describes an approach to the task of automatically gathering and cataloguing provenance metadata, currently under development and testing at Culham Center for Fusion Energy. The approach is being applied to a machine-agnostic code that calculates the axisymmetric equilibrium force balance in tokamaks, EFIT++, as a proof of principle test. The proposed approach avoids any code instrumentation or modification. It is based on the observation and monitoring of input preparation, workflow and code execution, system calls, log file data collection and interaction with the version control system. Pre-processing, post-processing, and data export and storage are monitored during the code runtime. Input data signals are captured using a data distribution platform called IDAM. The final objective of the catalogue is to create a complete description of the modeling activity, including user comments, and the relationship between data output, the main experimental database and the execution environment. For an intershot or post-pulse analysis (∼1000

  16. Microbial composition analyses by 16S rRNA sequencing: A proof of concept approach to provenance determination of archaeological ochre.

    Science.gov (United States)

    Lenehan, Claire E; Tobe, Shanan S; Smith, Renee J; Popelka-Filcoff, Rachel S

    2017-01-01

    Many archaeological science studies use the concept of "provenance", where the origins of cultural material can be determined through physical or chemical properties that relate back to the origins of the material. Recent studies using DNA profiling of bacteria have been used for the forensic determination of soils, towards determination of geographic origin. This manuscript presents a novel approach to the provenance of archaeological minerals and related materials through the use of 16S rRNA sequencing analysis of microbial DNA. Through the microbial DNA characterization from ochre and multivariate statistics, we have demonstrated the clear discrimination between four distinct Australian cultural ochre sites.

  17. Microbial composition analyses by 16S rRNA sequencing: A proof of concept approach to provenance determination of archaeological ochre.

    Directory of Open Access Journals (Sweden)

    Claire E Lenehan

    Full Text Available Many archaeological science studies use the concept of "provenance", where the origins of cultural material can be determined through physical or chemical properties that relate back to the origins of the material. Recent studies using DNA profiling of bacteria have been used for the forensic determination of soils, towards determination of geographic origin. This manuscript presents a novel approach to the provenance of archaeological minerals and related materials through the use of 16S rRNA sequencing analysis of microbial DNA. Through the microbial DNA characterization from ochre and multivariate statistics, we have demonstrated the clear discrimination between four distinct Australian cultural ochre sites.

  18. MRI of pathology-proven peripheral nerve amyloidosis

    Energy Technology Data Exchange (ETDEWEB)

    McKenzie, Gavin A.; Broski, Stephen M.; Howe, Benjamin M.; Spinner, Robert J.; Amrami, Kimberly K.; Dispenzieri, Angela; Ringler, Michael D. [Mayo Clinic, Department of Musculoskeletal Radiology, Rochester, MN (United States)

    2017-01-15

    To highlight the MRI characteristics of pathologically proven amyloidosis involving the peripheral nervous system (PNS) and determine the utility of MRI in directing targeted biopsy for aiding diagnosis. A retrospective study was performed for patients with pathologically proven PNS amyloidosis who also underwent MRI of the biopsied or excised nerve. MRI signal characteristics, nerve morphology, associated muscular denervation changes, and the presence of multifocal involvement were detailed. Pathology reports were reviewed to determine subtypes of amyloid. Charts were reviewed to gather patient demographics, neurological symptoms and radiologist interpretation. Four men and three women with a mean age of 62 ± 11 years (range 46-76) were identified. All patients had abnormal findings on EMG with mixed sensorimotor neuropathy. All lesions demonstrated diffuse multifocal neural involvement with T1 hypointensity, T2 hyperintensity, and variable enhancement on MRI. One lesion exhibited superimposed T2 hypointensity. Six of seven patients demonstrated associated muscular denervation changes. Peripheral nerve amyloidosis is rare, and the diagnosis is difficult because of insidious symptom onset, mixed sensorimotor neurologic deficits, and the potential for a wide variety of nerves affected. On MRI, peripheral nerve involvement is most commonly characterized by T1 hypointensity, T2 hyperintensity, variable enhancement, maintenance of the fascicular architecture with fusiform enlargement, multifocal involvement and muscular denervation changes. While this appearance mimics other inflammatory neuropathies, MRI can readily detect neural changes and direct-targeted biopsy, thus facilitating early diagnosis and appropriate management. (orig.)

  19. Negative Biopsy after Referral for Biopsy-Proven Gastric Cancer

    Science.gov (United States)

    Tae, Chung Hyun; Lee, Jun Haeng; Min, Byung-Hoon; Kim, Kyoung-Mee; Rhee, Poong-Lyul; Kim, Jae J.

    2016-01-01

    Background/Aims Repeat endoscopy with biopsy is often performed in patients with previously diagnosed gastric cancer to determine further treatment plans. However, biopsy results may differ from the original pathologic report. We reviewed patients who had a negative biopsy after referral for gastric cancer. Methods A total of 116 patients with negative biopsy results after referral for biopsy-proven gastric cancer were enrolled. Outside pathology slides were reviewed. Images of the first and second endoscopic examinations were reviewed. We reviewed the clinical history from referral to the final treatment. Results Eighty-eight patients (76%) arrived with information about the lesion from the referring physician. Among 96 patients with available outside slides, the rate of interobserver variation was 24%. Endoscopy was repeated at our institution; 85 patients (73%) were found to have definite lesions, whereas 31 patients (27%) had indeterminate lesions. In the group with definite lesions, 71% of the lesions were depressed in shape. The most common cause of a negative biopsy was mistargeting. In the group with indeterminate lesions, 94% had insufficient information. All patients with adequate follow-up were successfully treated based on the findings in the follow-up endoscopy. Conclusions A negative biopsy after referral for biopsy-proven gastric cancer is mainly caused by mistargeting and insufficient information during the referral. PMID:25963084

  20. Triangulating the provenance of African elephants using mitochondrial DNA.

    Science.gov (United States)

    Ishida, Yasuko; Georgiadis, Nicholas J; Hondo, Tomoko; Roca, Alfred L

    2013-02-01

    African elephant mitochondrial (mt) DNA follows a distinctive evolutionary trajectory. As females do not migrate between elephant herds, mtDNA exhibits low geographic dispersal. We therefore examined the effectiveness of mtDNA for assigning the provenance of African elephants (or their ivory). For 653 savanna and forest elephants from 22 localities in 13 countries, 4258 bp of mtDNA was sequenced. We detected eight mtDNA subclades, of which seven had regionally restricted distributions. Among 108 unique haplotypes identified, 72% were found at only one locality and 84% were country specific, while 44% of individuals carried a haplotype detected only at their sampling locality. We combined 316 bp of our control region sequences with those generated by previous trans-national surveys of African elephants. Among 101 unique control region haplotypes detected in African elephants across 81 locations in 22 countries, 62% were present in only a single country. Applying our mtDNA results to a previous microsatellite-based assignment study would improve estimates of the provenance of elephants in 115 of 122 mis-assigned cases. Nuclear partitioning followed species boundaries and not mtDNA subclade boundaries. For taxa such as elephants in which nuclear and mtDNA markers differ in phylogeography, combining the two markers can triangulate the origins of confiscated wildlife products.

  1. Provenance of Neoproterozoic sedimentary basement of northern Iran, Kahar Formation

    Science.gov (United States)

    Etemad-Saeed, Najmeh; Hosseini-Barzi, Mahboubeh; Adabi, Mohammad Hossein; Sadeghi, Abbas; Houshmandzadeh, Abdolrahim

    2015-11-01

    This article presents new data to understand the nature of the hidden crystalline basement of northern Iran and the tectonic setting of Iran during late Neoproterozoic time. The siliciclastic-dominated Kahar Formation represents the oldest known exposures of northern Iran and comprises late Ediacaran (ca. 560-550 Ma) compositionally immature sediments including mudrocks, sandstones, and conglomerates. This work focuses on provenance of three well preserved outcrops of this formation in Alborz Mountains: Kahar Mountain, Sarbandan, and Chalus Road, through petrographic and geochemical methods. Mineralogical Index of Alteration (MIA) and Chemical Index of Alteration (CIA-after correction for K-metasomatism) values combined with A-CN-K relations suggest moderate weathering in the source areas. The polymictic nature of Kahar conglomerates indicates a mixed provenance for them. However, modal analysis of Kahar sandstones (volcanic to plagioclase-rich lithic arkose) and whole rock geochemistry of mudrocks suggest that they are largely first-cycle sediments and that their sources were remarkably late Ediacaran, intermediate-felsic igneous rocks from proximal arc settings. Tectonic setting discrimination diagrams also indicate a convergent plate margin and continental arc related basin for Kahar sediments. This interpretation is supported by the phyllo-tectic to tectic composition and geochemistry of mudrocks. These results reveal the presence of a felsic/intermediate subduction-related basement (∼600-550 Ma) in this region, which provides new constraints on subduction scenario during this time interval in Iran, as a part of the Peri-Gondwanan terranes.

  2. Bangladesh-Burma Accretionary Prism: Evolution and Provenance

    Science.gov (United States)

    Allen, R.; Najman, Y.; Carter, A.; Willett, E.; Garzanti, E.; Wijbrans, J.; Bickle, M.; Vezzoli, G.; Ando, S.; Alexandre, P.; Uddin, J.

    2006-12-01

    The Chittagong Hill Tracts of Bangladesh and the Indo-Burman Ranges (Arakan Yoma) of Myanmar constitute an accretionary prism which runs along the India-Asian subduction zone. It consists of Palaeogene as well as Neogene sedimentary rocks that may preserve a record of early Himalayan erosion, which is as yet inaccessible in the deeper parts of the Bengal Fan, or missing in other sediment repositories of the region (Curray et al. 1979, 2003 and Gani et al. 1999). However, a Burman provenance has also been suggested for these rocks (Mitchell, 1993; Pal et al. 2003). In order to characterise the provenance signature of the accretionary prism rocks and determine Himalayan or Burman source, we have used petrographic, heavy mineral, U-Pb, fission track, Sm-Nd and Ar-Ar analyses. We present results of the initial study, including new seismic data (obtained by Cairn Energy plc.) which provides a seismic stratigraphy of the Chittagong Hill Tracts calibrated to offshore well seismic data, as well as comprehensive palaeoshelf mapping of the Bengal Basin region during the Eocene to Pliocene, which documents source input direction.

  3. Identifying redundancy and exposing provenance in crowdsourced data analysis.

    Science.gov (United States)

    Willett, Wesley; Ginosar, Shiry; Steinitz, Avital; Hartmann, Björn; Agrawala, Maneesh

    2013-12-01

    We present a system that lets analysts use paid crowd workers to explore data sets and helps analysts interactively examine and build upon workers' insights. We take advantage of the fact that, for many types of data, independent crowd workers can readily perform basic analysis tasks like examining views and generating explanations for trends and patterns. However, workers operating in parallel can often generate redundant explanations. Moreover, because workers have different competencies and domain knowledge, some responses are likely to be more plausible than others. To efficiently utilize the crowd's work, analysts must be able to quickly identify and consolidate redundant responses and determine which explanations are the most plausible. In this paper, we demonstrate several crowd-assisted techniques to help analysts make better use of crowdsourced explanations: (1) We explore crowd-assisted strategies that utilize multiple workers to detect redundant explanations. We introduce color clustering with representative selection--a strategy in which multiple workers cluster explanations and we automatically select the most-representative result--and show that it generates clusterings that are as good as those produced by experts. (2) We capture explanation provenance by introducing highlighting tasks and capturing workers' browsing behavior via an embedded web browser, and refine that provenance information via source-review tasks. We expose this information in an explanation-management interface that allows analysts to interactively filter and sort responses, select the most plausible explanations, and decide which to explore further.

  4. Locally Derived Sediment, Yet Chemically and Chronologically Unique - Overcoming the "Stepladder Effect" in Provenance Studies

    Science.gov (United States)

    Bonich, M. B.; Samson, S. D.; Fedo, C.

    2014-12-01

    The trace element composition of clastic sedimentary rocks has frequently been used to characterize sediment provenance. To test the efficacy of whole-rock chemical composition as a provenance indicator, researchers examined alluvium solely derived from the 74 Ma Stepladder pluton (SP), in the Mojave Desert of SE California. Despite the low degree of chemical alteration and minimal transport distance neither trace element concentration or immobile elements ratios accurately reflected that of the source pluton. Furthermore, there is a considerable discrepancy between the frequency of zircon U-Pb ages from the SP and its derived alluvium. The majority (~ 75%) of the zircon grains from the SP are ~ 74 Ma and the remaining 25% are ~ 1.65 Ga. In contrast, ~ 50 to 85% of the detrital zircon, of varying grain sizes, yielded Proterozoic ages. Both the Kolmogorov-Smirnov (KS) and Likeness tests were used to compare all 120 possible samples pairs; the KS test rejected the null hypothesis that the zircon are derived from the same population, and the likeness test showed that most sediments are not like the source. These results, which we refer to as the "Stepladder effect", led us to consider Sr isotopic composition as a potentially more robust metric of provenance. Several of the sediment samples have similar present-day 87Sr/86Sr to that determined for four SP samples which range from 0.71055 to 0.71129. However, three sediment samples are distinctly different, suggesting a sedimentary sorting effect (e.g. concentration of biotite in finer sediments). To minimize this confounding effect we will determine the Sr isotopic composition of detrital apatite and biotite to compare with the same minerals of SP source. Using these specific minerals, which represent end-members of Rb-Sr spectrum, may help to constrain the degree of mixing with an externally sourced material (e.g. aeolian-derived grains) that have been added to the alluvium shedding further light on the Stepladder

  5. Work force retention: Role of work environment, organization commitment, supervisor support and training & development in ceramic sanitary ware industries in India

    Directory of Open Access Journals (Sweden)

    Umamaheswari S

    2016-08-01

    Full Text Available Purpose: Although retention of employees has become hot topic in this career turbulent era, practically no empirical research is carried out in the fast growing ceramic sector till now and this research fills the gap in the literature. The literatures surveys reported that organization commitment is an important determinant of retention and work environment, supervisor support and training and development are the most relevant antecedents increasing commitment towards organization. This paper examines the impact of the above factors over organization commitment and explores the effects of organization commitment on retention, and verifies the mediating effect of organization commitment on the relationship between proposed factors and retention. Design/methodology/approach: A survey was completed by 416 employees working in five ceramic sanitary ware factories located at different places in India. Questionnaire consisting of items adopted from previous researches were used to collect data. The selection of respondents was based on the simple random sampling. Findings: Findings reveals that organization commitment influences retention and all the above factors enhances it. Moreover organization commitment partially mediates the relationship between proposed factors and retention. However multiple regression analysis indicated that training and development did not have any notable   influence on retention. Limitations: This study was conducted in a particular country and also in a particular sector of manufacturing industry, which limits generalization .Possibility of bias towards their organization and assumption that respondents know about their organization are other limitations. Implications: This paper offers recommendations to HR(Human resource managers that they should extend their support to work environment, supervisor support and training and development in order to generate better relationship with employees and to reduce their

  6. Work force retention: Role of work environment, organization commitment, supervisor support and training & development in ceramic sanitary ware industries in India

    Energy Technology Data Exchange (ETDEWEB)

    Umamaheswari S, Jayasree Krishnan

    2016-07-01

    Although retention of employees has become hot topic in this career turbulent era, practically no empirical research is carried out in the fast growing ceramic sector till now and this research fills the gap in the literature. The literatures surveys reported that organization commitment is an important determinant of retention and work environment, supervisor support and training and development are the most relevant antecedents increasing commitment towards organization. This paper examines the impact of the above factors over organization commitment and explores the effects of organization commitment on retention, and verifies the mediating effect of organization commitment on the relationship between proposed factors and retention. Design/methodology/approach: A survey was completed by 416 employees working in five ceramic sanitary ware factories located at different places in India. Questionnaire consisting of items adopted from previous researches were used to collect data. The selection of respondents was based on the simple random sampling. Findings: Findings reveals that organization commitment influences retention and all the above factors enhances it. Moreover organization commitment partially mediates the relationship between proposed factors and retention. However multiple regression analysis indicated that training and development did not have any notable influence on retention. Limitations: This study was conducted in a particular country and also in a particular sector of manufacturing industry, which limits generalization .Possibility of bias towards their organization and assumption that respondents know about their organization are other limitations. Implications: This paper offers recommendations to HR(Human resource) managers that they should extend their support to work environment, supervisor support and training and development in order to generate better relationship with employees and to reduce their likelihood of leaving the company

  7. Teicoplanin versus vancomycin for proven or suspected infection.

    Science.gov (United States)

    Cavalcanti, Alexandre B; Goncalves, Anderson R; Almeida, Claudia S; Bugano, Diogo Dg; Silva, Eliezer

    2010-06-16

    Vancomycin and teicoplanin are commonly used to treat gram-positive infections, particularly those caused by methicillin-resistant Staphylococcus aureus (MRSA). There is uncertainty regarding the effects of teicoplanin compared to vancomycin on kidney function with some previous studies suggesting teicoplanin is less nephrotoxic than vancomycin. To investigate the efficacy and safety of vancomycin versus teicoplanin in patients with proven or suspected infection. We searched the Cochrane Renal Group's Specialised Register, CENTRAL, MEDLINE, EMBASE, reference lists of nephrology textbooks, review articles with relevant studies and sent letters seeking information about unpublished or incomplete studies to investigators involved in previous studies. We searched for randomised controlled trials (RCTs) in any language comparing teicoplanin to vancomycin for patients with proven or suspected infection. Two authors independently evaluated methodological quality and extracted data using standardised data extraction forms. Study investigators were contacted for information not available in the original manuscripts. Random effects model was used to estimate the pooled risk ratio (RR) with 95% confidence interval (CI). We included 24 studies (2,610 patients) in this review. Teicoplanin reduced the risk of nephrotoxicity compared to vancomycin (RR 0.66, 95% CI 0.48 to 0.90).The effects of teicoplanin or vancomycin were similar for clinical cure (RR 1.03, 95% CI 0.98 to 1.08), microbiological cure (RR 0.98, 95% CI 0.93 to 1.03) and mortality (RR 1.02, 95% CI 0.79 to1.30). Six studies reported no cases of acute kidney injury (AKI) needing dialysis. Adverse events were less frequent with teicoplanin including cutaneous rash (RR 0.57, 95% CI 0.35 to 0.92), red man syndrome (RR 0.21, 95% CI 0.08 to 0.59) and total adverse events (RR 0.73, 95% CI 0.53 to 1.00). A lower risk of nephrotoxicity with teicoplanin was observed in patients either with (RR 0.51, 95% CI 0.30 to 0.88) or

  8. Federated provenance of oceanographic research cruises: from metadata to data

    Science.gov (United States)

    Thomas, Rob; Leadbetter, Adam; Shepherd, Adam

    2016-04-01

    The World Wide Web Consortium's Provenance Data Model and associated Semantic Web ontology (PROV-O) have created much interest in the Earth and Space Science Informatics community (Ma et al., 2014). Indeed, PROV-O has recently been posited as an upper ontology for the alignment of various data models (Cox, 2015). Similarly, PROV-O has been used as the building blocks of a data release lifecycle ontology (Leadbetter & Buck, 2015). In this presentation we show that the alignment between different local data descriptions of an oceanographic research cruise can be achieved through alignment with PROV-O and that descriptions of the funding bodies, organisations and researchers involved in a cruise and its associated data release lifecycle can be modelled within a PROV-O based environment. We show that, at a first-order, this approach is scalable by presenting results from three endpoints (the Biological and Chemical Oceanography Data Management Office at Woods Hole Oceanographic Institution, USA; the British Oceanographic Data Centre at the National Oceanography Centre, UK; and the Marine Institute, Ireland). Current advances in ontology engineering, provide pathways to resolving reasoning issues from varying perspectives on implementing PROV-O. This includes the use of the Information Object design pattern where such edge cases as research cruise scheduling efforts are considered. PROV-O describes only things which have happened, but the Information Object design pattern allows for the description of planned research cruises through its statement that the local data description is not the the entity itself (in this case the planned research cruise) and therefore the local data description itself can be described using the PROV-O model. In particular, we present the use of the data lifecycle ontology to show the connection between research cruise activities and their associated datasets, and the publication of those data sets online with Digital Object Identifiers and

  9. Functional Requirements for Information Resource Provenance on the Web

    Energy Technology Data Exchange (ETDEWEB)

    McCusker, James P.; Lebo, Timothy; Graves, Alvaro; Difranzo, Dominic; Pinheiro da Silva, Paulo; McGuinness, Deborah L.

    2012-06-19

    We provide a means to formally explain the relationship between HTTP URLs and the representations returned when they are requested. According to existing World Wide Web architecture, the URL serves as an identier for a semiotic referent while the document returned via HTTP serves as a representation of the same referent. This begins with two sides of a semiotic triangle; the third side is the relationship between the URL and the representation received. We complete this description by extending the library science resource model Functional Requirements for Bibliographic Resources (FRBR) with cryptographic message and content digests to create a Functional Requirements for Information Resources (FRIR). We show how applying the FRIR model to HTTP GET and POST transactions disambiguates the many relationships between a given URL and all representations received from its request, provides fine-grained explanations that are complementary to existing explanations of web resources, and integrates easily into the emerging W3C provenance standard.

  10. Provenance graph query method based on double layer index structure

    Science.gov (United States)

    Cai, Qing Qiu; Cui, Hong Gang; Tang, Hao

    2017-08-01

    Order to solve the problem that the efficiency of the existing source map is low and the resource occupancy rate is high, considering the relationship between the origin information and the data itself and the internal structure of the origin information, a method of provenance graph query based on double layer index structure is proposed. Firstly, we propose a two layer index structure based on the global index of the dictionary table and the local index based on the bitmap. The global index is used to query the server nodes stored in the source map. The local index is used to query the global index. Finally, based on the double-level index structure, a method of starting map query is designed. The experimental results show that the proposed method not only improves the efficiency of query and reduces the waste of memory resources.

  11. Evolving provenance in the Proterozoic Pranhita-Godavari Basin, India

    Directory of Open Access Journals (Sweden)

    Udeni Amarasinghe

    2015-05-01

    Full Text Available The Pranhita-Godavari Basin in central eastern India is one of the Proterozoic “Purāna” basins of cratonic India. New geochronology demonstrates that it has a vast depositional history of repeated basin reactivation from the Palaeoproterozoic to the Mesozoic. U-Pb laser ablation inductively coupled plasma mass spectrometry dating of detrital zircons from two samples of the Somanpalli Group—a member of the oldest sedimentary cycle in the valley—constrains its depositional age to ∼1620 Ma and demonstrates a tripartite age provenance with peaks at ∼3500 Ma, ∼2480 Ma and ∼1620 Ma, with minor age peaks in the Eoarchaean (∼3.8 Ga and at ∼2750 Ma. These ages are consistent with palaeocurrent data suggesting a southerly source from the Krishna Province and Enderby Land in East Antarctica. The similarity in the maximum depositional age with previously published authigenic glauconite ages suggest that the origin of the Pranhita-Godvari Graben originated as a rift that formed at a high angle to the coeval evolving late Meosproterozoic Krishna Province as Enderby Land collided with the Dharwar craton of India. In contrast, detrital zircons from the Cycle III Sullavai Group red sandstones yielded a maximum depositional age of 970 ± 20 Ma and had age peaks of ∼2550 Ma, ∼1600 Ma and then a number of Mesoproterozoic detrital zircons terminating in three analyses at ∼970 Ma. The provenance of these is again consistent with a southerly source from the Eastern Ghats Orogen and Antarctica. Later cycles of deposition include the overlying Albaka/Usur Formations and finally the late Palaeozoic to Mesozoic Gondwana Supergroup.

  12. ASDF: An Adaptable Seismic Data Format with Full Provenance

    Science.gov (United States)

    Smith, J. A.; Krischer, L.; Tromp, J.; Lefebvre, M. P.

    2015-12-01

    In order for seismologists to maximize their knowledge of how the Earth works, they must extract the maximum amount of useful information from all recorded seismic data available for their research. This requires assimilating large sets of waveform data, keeping track of vast amounts of metadata, using validated standards for quality control, and automating the workflow in a careful and efficient manner. In addition, there is a growing gap between CPU/GPU speeds and disk access speeds that leads to an I/O bottleneck in seismic workflows. This is made even worse by existing seismic data formats that were not designed for performance and are limited to a few fixed headers for storing metadata.The Adaptable Seismic Data Format (ASDF) is a new data format for seismology that solves the problems with existing seismic data formats and integrates full provenance into the definition. ASDF is a self-describing format that features parallel I/O using the parallel HDF5 library. This makes it a great choice for use on HPC clusters. The format integrates the standards QuakeML for seismic sources and StationXML for receivers. ASDF is suitable for storing earthquake data sets, where all waveforms for a single earthquake are stored in a one file, ambient noise cross-correlations, and adjoint sources. The format comes with a user-friendly Python reader and writer that gives seismologists access to a full set of Python tools for seismology. There is also a faster C/Fortran library for integrating ASDF into performance-focused numerical wave solvers, such as SPECFEM3D_GLOBE. Finally, a GUI tool designed for visually exploring the format exists that provides a flexible interface for both research and educational applications. ASDF is a new seismic data format that offers seismologists high-performance parallel processing, organized and validated contents, and full provenance tracking for automated seismological workflows.

  13. Species choice, provenance and species trials among native Brazilian species

    Energy Technology Data Exchange (ETDEWEB)

    Drumond, M.A.

    1982-01-01

    Six papers from the conference are presented. Drumond, M.A., Potential of species native to the semi-arid tropics, 766-781, (Refs. 18), reports on Anadenanthera macrocarpa, Mimosa species, Schinopsis brasiliensis, Spondias tuberosa, Ziziphus joazeiro, Cnidoscolus phyllacanthus, Bursera leptophleos (leptophloeos), Tabebuia impetiginosa, Astronium urundeuva, and Mimosa caesalpinia. Monteiro, R.F.R., Speltz, R.M., Gurgel, J.T. do A.; Silvicultural performance of 24 provenances of Araucaria angustifolia in Parana, 814-824, (Refs. 8). Pires, C.L. da S., Kalil Filho, A.N., Rosa, P.R.F. da, Parente, P.R., Zanatto, A.C.S.; Provenance trials of Cordia alliodora in the State of Sao Paulo, 988-995, (Refs. 9). Nogueira, J.C.B., Siqueira, A.C.M.F., Garrido, M.A.O., Gurgel Garrido, L.M. do A., Rosa, P.R.F., Moraes, J.L. de, Zandarin, M.A., Gurgel Filho, O.A., Trials of some native species in various regions of the State of Sao Paulo, 1051-1063, (Refs. 9) describes Centrolobium tomentosum, Peltophorum dubium, Tabebuia vellosoi, Cariniana legalis, and Balfourodendron riedelianum. Batista, M.P., Borges, J.F., Franco, M.A.B.; Early growth of a native species in comparison with exotics in northeastern Para, Brazil, 1105-1110, (Refs. 3). Jacaranda copaia is compared with Gmelina arborea, Pinus caribaea various hondurensis, Eucalyptus deglupta, and E. urophylla. Lima, P.C.F., Souza, S.M. de, Drumond, M.A.; Trials of native forest species at Petrolina, Pernambuco, 1139-1148, (Refs. 8), deals with Anadenanthera macrocarpa, Piptadenia obliqua, Pithecellobium foliolosum, Astronium urundeuva, Schinopsis brasiliensis, Cassia excelsa, Caesalpinia pyramidalis, Parkia platycephala, Pseudobombax simplicifolium, Tabebuia impetiginosa, Caesalpinia ferrea, and Aspidosperma pyrifolium. 18 references.

  14. Provenance of Des Moines lobe till records ice-stream catchment evolution during Laurentide deglaciation

    Science.gov (United States)

    Lusardi, B.A.; Jennings, C.E.; Harris, K.L.

    2011-01-01

    Mapping and analysis of deposits of the Des Moines lobe of the Laurentide Ice Sheet, active after the Last Glacial Maximum (LGM), reveal several texturally and lithologically distinct tills within what had been considered to be a homogeneous deposit. Although the differences between tills are subtle, minor distinctions are predictable and mappable, and till sheets within the area covered by the lobe can be correlated for hundreds of kilometres parallel to ice flow. Lateral till-sheet contacts are abrupt or overlap in a narrow zone, coincident with a geomorphic discontinuity interpreted to be a shear margin. Till sheets 10 to 20m thick show mixing in their lower 2 to 3m. We suggest that: (i) lithologically distinct till sheets correspond to unique ice-stream source areas; (ii) the sequence of tills deposited by the Des Moines lobe was the result of the evolution and varying dominance of nearby and competing ice streams and their tributaries; and (iii) in at least one instance, more than one ice stream simultaneously contributed to the lobe. Therefore the complex sequence of tills of subtly different provenances, and the unconformities between them record the evolution of an ice-catchment area during Laurentide Ice Sheet drawdown. Till provenance data suggest that, after till is created in the ice-stream source area, the subglacial conditions required for transporting till decline and incorporation of new material is limited. ?? 2011 The Authors. Boreas ?? 2011 The Boreas Collegium.

  15. Fine-Grained Provenance Inference for a Large Processing Chain with Non-materialized Intermediate Views

    NARCIS (Netherlands)

    Huq, M.R.; Apers, Peter M.G.; Wombacher, Andreas; Ailamaki, Anastasia; Bowers, Shawn

    Many applications facilitate a data processing chain, i.e. a workflow, to process data. Results of intermediate processing steps may not be persistent since reproducing these results are not costly and these are hardly re-usable. However, in stream data processing where data arrives continuously,

  16. Provenance tracking and querying in the ViroLab Virtual Laboratory

    NARCIS (Netherlands)

    Balis, B.; Bubak, M.; Pelczar, M.; Wach, J.; Priol, T.; Lefevre, L.; Buyya, R.

    2008-01-01

    We present an approach to provenance tracking and querying which enables end-users to construct complex queries over provenance records. The use of ontologies for modeling provenance, data and applications enables query construction in an end-user oriented manner, i.e. by using terms of the

  17. Provenance variation in subalpine fir grown as an exotic tree species in Denmark and Iceland

    DEFF Research Database (Denmark)

    Skúlason, Brynjar

    in a period of 15 growing seasons after establishment. Provenances showed significant differences for all measured traits. The northernmost provenances showed earliest bud set, highest autumn frost tolerance and a latitudinal cline was delineated, while the southernmost provenances showed earliest flushing...

  18. Looking Inside the Black-Box: Capturing Data Provenance using Dynamic Instrumentation

    NARCIS (Netherlands)

    Stamatogiannakis, M.; Groth, P.T.; Bos, H.J.

    2014-01-01

    Knowing the provenance of a data item helps in ascertaining its trustworthiness. Various approaches have been proposed to track or infer data provenance. However, these approaches either treat an executing program as a black-box, limiting the fidelity of the captured provenance, or require

  19. Ion Beam Analysis for the provenance attribution of lapis lazuli used in glyptic art: The case of the "Collezione Medicea"

    Science.gov (United States)

    Re, Alessandro; Angelici, Debora; Lo Giudice, Alessandro; Corsi, Jacopo; Allegretti, Silvia; Biondi, Alessia Fabiola; Gariani, Gianluca; Calusi, Silvia; Gelli, Nicla; Giuntini, Lorenzo; Massi, Mirko; Taccetti, Francesco; La Torre, Leonardo; Rigato, Valentino; Pratesi, Giovanni

    2015-04-01

    The first part of this study reports on the wide campaign for the extension of the database of both trace and minor elements concentration in diopside by means of μ-PIXE measurements and of luminescence spectra in diopside and wollastonite by means of μ-IL measurements. Diopside and wollastonite are actually two of the most common lapis lazuli-forming minerals. For this former part of the study, we analysed rocks of known provenance at the microbeam line of the LNL laboratories in Legnaro (PD) of the Istituto Nazionale di Fisica Nucleare (INFN). The latter part of the paper is dedicated to the non-invasive Ion Beam Analyses (IBA) characterisation of six pieces of the "Collezione Medicea". The collection is exhibited at the Museum of Natural History (University of Firenze) and belonged to the Medici family. It includes artworks made of lapis lazuli manufactured in the 16th and 17th centuries but there is not precise information about the provenance of the used raw material. Results on the artworks show, as expected, that the Chilean provenance of the material used for the analysed artworks has to be excluded. Lapis lazuli used for five of the analysed artworks can be ascribed to the Afghan quarry district, while one object cannot be attributed only on the base of diopside and wollastonite analysis.

  20. Investigating reproducibility and tracking provenance - A genomic workflow case study.

    Science.gov (United States)

    Kanwal, Sehrish; Khan, Farah Zaib; Lonie, Andrew; Sinnott, Richard O

    2017-07-12

    Computational bioinformatics workflows are extensively used to analyse genomics data, with different approaches available to support implementation and execution of these workflows. Reproducibility is one of the core principles for any scientific workflow and remains a challenge, which is not fully addressed. This is due to incomplete understanding of reproducibility requirements and assumptions of workflow definition approaches. Provenance information should be tracked and used to capture all these requirements supporting reusability of existing workflows. We have implemented a complex but widely deployed bioinformatics workflow using three representative approaches to workflow definition and execution. Through implementation, we identified assumptions implicit in these approaches that ultimately produce insufficient documentation of workflow requirements resulting in failed execution of the workflow. This study proposes a set of recommendations that aims to mitigate these assumptions and guides the scientific community to accomplish reproducible science, hence addressing reproducibility crisis. Reproducing, adapting or even repeating a bioinformatics workflow in any environment requires substantial technical knowledge of the workflow execution environment, resolving analysis assumptions and rigorous compliance with reproducibility requirements. Towards these goals, we propose conclusive recommendations that along with an explicit declaration of workflow specification would result in enhanced reproducibility of computational genomic analyses.

  1. The Dialectal Provenance of London, Wellcome Library, Ms 5262

    Directory of Open Access Journals (Sweden)

    Esteban-Segura Laura

    2014-12-01

    Full Text Available This paper takes into consideration the language found in London, Wellcome Library, MS 5262, a one-volume codex from the early fifteenth century which holds a medical recipe collection. The manuscript, written in Middle English (and with a few fragments in Latin, represents a fine exemplar of a remedybook, a type of writing that has been traditionally considered to be popular. The main aim is to study the dialect of the text contained in folios 3v-61v in order to localise it geographically. The methodology followed for the purpose is grounded on the model supplied by the Linguistic Atlas of Late Mediaeval English (LALME (McIntosh et al. 1986, which consists of several stages including the completion of a survey questionnaire, the creation of the linguistic profile of the text and the application of the ‘fit’-technique (McIntosh et al. 1986, vol. 1: 10-12; Benskin 1991. Extralinguistic features of the manuscript may also be taken into consideration. This comprehensive analysis will help us to circumscribe the dialectal provenance and/or local origin of the text accurately.

  2. Antimicrobial stewardship initiatives throughout Europe: proven value for money

    Directory of Open Access Journals (Sweden)

    Edwin J.M. Oberjé

    2017-03-01

    Full Text Available Antimicrobial stewardship is recognized as a key component to stop the current European spread of antimicrobial resistance. It has also become evident that antimicrobial resistance is a problem that cannot be tackled by single institutions or physicians. Prevention of antimicrobial resistance needs rigorous actions at ward level, institution level, national level and at supra-national levels. Countries can learn from each other and possibly transplant best practices across borders to prevent antimicrobial resistance. The aim of this study is to highlight some of the success stories of proven cost-effective interventions, and to describe the actions that have been taken, the outcomes that have been found, and the difficulties that have been met. In some cases we came across substantial scope for real-life cost savings. Although the best approach to effectively hinder the spread of antimicrobial resistance remains unclear and may vary significantly among settings, several EU-wide examples demonstrate that cost-effective antimicrobial stewardship is possible. Such examples can encourage others to implement (the most cost-effective elements in their system.

  3. Antimicrobial Stewardship Initiatives Throughout Europe: Proven Value for Money.

    Science.gov (United States)

    Oberjé, Edwin J M; Tanke, Marit A C; Jeurissen, Patrick P T

    2017-03-30

    Antimicrobial stewardship is recognized as a key component to stop the current European spread of antimicrobial resistance. It has also become evident that antimicrobial resistance is a problem that cannot be tackled by single institutions or physicians. Prevention of antimicrobial resistance needs rigorous actions at ward level, institution level, national level and at supra-national levels. Countries can learn from each other and possibly transplant best practices across borders to prevent antimicrobial resistance. The aim of this study is to highlight some of the success stories of proven cost-effective interventions, and to describe the actions that have been taken, the outcomes that have been found, and the difficulties that have been met. In some cases we came across substantial scope for real-life cost savings. Although the best approach to effectively hinder the spread of antimicrobial resistance remains unclear and may vary significantly among settings, several EU-wide examples demonstrate that cost-effective antimicrobial stewardship is possible. Such examples can encourage others to implement (the most cost-effective) elements in their system.

  4. Provenance-aware optimization of workload for distributed data production

    Science.gov (United States)

    Makatun, Dzmitry; Lauret, Jérôme; Rudová, Hana; Šumbera, Michal

    2017-10-01

    Distributed data processing in High Energy and Nuclear Physics (HENP) is a prominent example of big data analysis. Having petabytes of data being processed at tens of computational sites with thousands of CPUs, standard job scheduling approaches either do not address well the problem complexity or are dedicated to one specific aspect of the problem only (CPU, network or storage). Previously we have developed a new job scheduling approach dedicated to distributed data production – an essential part of data processing in HENP (preprocessing in big data terminology). In this contribution, we discuss the load balancing with multiple data sources and data replication, present recent improvements made to our planner and provide results of simulations which demonstrate the advantage against standard scheduling policies for the new use case. Multi-source or provenance is common in computing models of many applications whereas the data may be copied to several destinations. The initial input data set would hence be already partially replicated to multiple locations and the task of the scheduler is to maximize overall computational throughput considering possible data movements and CPU allocation. The studies have shown that our approach can provide a significant gain in overall computational performance in a wide scope of simulations considering realistic size of computational Grid and various input data distribution.

  5. Experimental evaluation of job provenance in ATLAS environment

    Science.gov (United States)

    Křenek, A.; Sitera, J.; Chudoba, J.; Dvořák, F.; Filipovič, J.; Kmuníček, J.; Matyska, L.; Mulaš, M.; Ruda, M.; Šustr, Z.; Campana, S.; Molinari, E.; Rebatto, D.

    2008-07-01

    Grid middleware stacks, including gLite, matured into the state of being able to process up to millions of jobs per day. Logging and Bookkeeping, the gLite job-tracking service, keeps pace with this rate; however, it is not designed to provide a long-term archive of information on executed jobs. ATLAS — representative of a large user community — addresses this issue with its own job catalogue (ProdDB). Development of such a customized service, not easily reusable, took considerable effort which is not affordable by smaller communities. On the contrary, Job Provenance (JP), a generic gLite service designed for long-term archiving of information on executed jobs focusing on scalability, extensibility, uniform data view, and configurability, allows more specialized catalogues to be easily built. We present the first results of an experimental JP deployment for the ATLAS production infrastructure where a JP installation was fed with a part of ATLAS jobs, and also stress tested with real production data. The main outcome of this work is a demonstration that JP can complement large-scale application-specific job catalogue services, while serving a similar purpose where there are none available.

  6. Descartes Mountains and Cayley Plains - Composition and provenance

    Science.gov (United States)

    Drake, M. J.; Taylor, G. J.; Goles, G. G.

    1974-01-01

    Trace element compositions of petrographically characterized 2-4 mm lithic fragments from Apollo 16 soil samples are used to calculate initial REE concentrations in liquids in equilibrium with lunar anorthosites and to discuss the provenance of the Cayley Formation. Lithic fragments may be subdivided into four groups: (1) ANT rocks, (2) K- and SiO2-rich mesostasis-bearing rocks, (3) poikiloblastic rocks, and (4) (spinel) troctolites. Model liquids in equilibrium with essentially monominerallic anorthosites have initial REE concentrations 5-8 times those of chondrites. The REE contents of K- and SiO2-rich mesostasis-bearing rocks and poikiloblastic rocks are dominated by the mesostasis phases. ANT rocks appear to be more abundant in the Descartes Mountains, while poikiloblastic rocks appear to be more abundant in the Cayley Plains. Poikiloblastic rocks have intermediate to high LIL-element concentrations yet the low gamma-ray activity of Mare Orientale implies low LIL-element concentrations. Consequently, it is unlikely that the Cayley Formation is Orientale ejecta. A local origin as ejecta from smaller impacts is a more plausible model for the deposition of the Cayley Formation.

  7. Opinion: Taking phytoremediation from proven technology to accepted practice.

    Science.gov (United States)

    Gerhardt, Karen E; Gerwing, Perry D; Greenberg, Bruce M

    2017-03-01

    Phytoremediation is the use of plants to extract, immobilize, contain and/or degrade contaminants from soil, water or air. It can be an effective strategy for on site and/or in situ removal of various contaminants from soils, including petroleum hydrocarbons (PHC), polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), solvents (e.g., trichloroethylene [TCE]), munitions waste (e.g., 2,4,6-trinitrotoluene [TNT]), metal(loid)s, salt (NaCl) and radioisotopes. Commercial phytoremediation technologies appear to be underutilized globally. The primary objective of this opinion piece is to discuss how to take phytoremediation from a proven technology to an accepted practice. An overview of phytoremediation of soil is provided, with the focus on field applications, to provide a frame of reference for the subsequent discussion on better utilization of phytoremediation. We consider reasons why phytoremediation is underutilized, despite clear evidence that, under many conditions, it can be applied quite successfully in the field. We offer suggestions on how to gain greater acceptance for phytoremediation by industry and government. A new paradigm of phytomanagement, with a specific focus on using phytoremediation as a "gentle remediation option" (GRO) within a broader, long-term management strategy, is also discussed. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  8. Provenance-Based Debugging and Drill-Down in Data-Oriented Workflows

    KAUST Repository

    Ikeda, Robert

    2012-04-01

    Panda (for Provenance and Data) is a system that supports the creation and execution of data-oriented workflows, with automatic provenance generation and built-in provenance tracing operations. Workflows in Panda are arbitrary a cyclic graphs containing both relational (SQL) processing nodes and opaque processing nodes programmed in Python. For both types of nodes, Panda generates logical provenance - provenance information stored at the processing-node level - and uses the generated provenance to support record-level backward tracing and forward tracing operations. In our demonstration we use Panda to integrate, process, and analyze actual education data from multiple sources. We specifically demonstrate how Panda\\'s provenance generation and tracing capabilities can be very useful for workflow debugging, and for drilling down on specific results of interest. © 2012 IEEE.

  9. Provenance based data integrity checking and verification in cloud environments.

    Science.gov (United States)

    Imran, Muhammad; Hlavacs, Helmut; Haq, Inam Ul; Jan, Bilal; Khan, Fakhri Alam; Ahmad, Awais

    2017-01-01

    Cloud computing is a recent tendency in IT that moves computing and data away from desktop and hand-held devices into large scale processing hubs and data centers respectively. It has been proposed as an effective solution for data outsourcing and on demand computing to control the rising cost of IT setups and management in enterprises. However, with Cloud platforms user's data is moved into remotely located storages such that users lose control over their data. This unique feature of the Cloud is facing many security and privacy challenges which need to be clearly understood and resolved. One of the important concerns that needs to be addressed is to provide the proof of data integrity, i.e., correctness of the user's data stored in the Cloud storage. The data in Clouds is physically not accessible to the users. Therefore, a mechanism is required where users can check if the integrity of their valuable data is maintained or compromised. For this purpose some methods are proposed like mirroring, checksumming and using third party auditors amongst others. However, these methods use extra storage space by maintaining multiple copies of data or the presence of a third party verifier is required. In this paper, we address the problem of proving data integrity in Cloud computing by proposing a scheme through which users are able to check the integrity of their data stored in Clouds. In addition, users can track the violation of data integrity if occurred. For this purpose, we utilize a relatively new concept in the Cloud computing called "Data Provenance". Our scheme is capable to reduce the need of any third party services, additional hardware support and the replication of data items on client side for integrity checking.

  10. Integrating proven falls prevention interventions into government programs.

    Science.gov (United States)

    Day, Lesley; Donaldson, Alex; Thompson, Catherine; Thomas, Margaret

    2014-04-01

    To identify Department of Health programs with high potential to integrate evidence-based interventions to prevent falls among older people. Broad consultation within the Department followed by structured decision making. This work was informed by an analysis of Victorian hospital separations data and a Cochrane Systematic Review to identify relevant target groups and interventions. Ranking of the integration potential of interventions for a broad range of Department program areas was achieved through a facilitated workshop. A short list of program areas was then developed and scored, using pre-defined criteria, for their match with the interventions. The ranked order of interventions, from most to least suitable for integration, were: multifactorial risk assessment and intervention; multi-component group exercise; medication review; occupational therapy-based home safety; home-based exercise; and first eye cataract surgery. Four of six program areas had a strong match (a score of ≥75% of the maximum score) with one or more of three interventions. Two program areas (Primary Care Partnerships, and Home and Community Care) had strong matches with three interventions (group- and home-based exercise; occupational therapy-based home safety) and were selected as priority areas. The Hospital Admissions Risk Program had strong and good matches respectively with home-based exercise and medication review, and was also selected. Our systematic methods identified Department programs with strong potential for integration of proven falls prevention interventions. Matching departmental programs and evidence-based interventions for integration may lead to more efficient resource allocation for falls prevention in Victoria. © 2014 The Authors. ANZJPH © 2014 Public Health Association of Australia.

  11. Provenance of coastal dune sands along Red Sea, Egypt

    Science.gov (United States)

    Zaid, Samir M.

    2017-06-01

    Texture, mineralogy, and major and trace element geochemistry of 26 coastal dune sand samples were studied to determine the provenance and tectonic environment of two dune fields close to the beaches of Safaga (SF) and Quseir (QS) at the Egyptian Red Sea coast. Onshore winds generate fine, moderate, moderately-well to well-sorted, coarse-skewed to near-symmetrical dune sands with mesokurtic distributions. Winds pick up and transport grains from nearby beach sands and alluvial deposits into a wide Red Sea coastal plain at the border of the beach. The mineralogical (Qt-Ft-Lt) and geochemical composition of the sands, indicate that SF and QS coastal dune sands are mature and influenced by quartz-rich sands. The average CIA values in SF and QS coastal dune sands are low relative to the range of the PAAS, suggesting an arid climate and a low intensity of chemical weathering. The SF and QS coastal dune sand samples are plotted in the recycled orogen and partly in craton interior fields suggesting recycled older sedimentary and partly metamorphic-plutonic sources. The high content of quartz with shell debris and carbonates in coastal dune sands support the recycled sedimentary beach and alluvial sand sources. The dominance of heavy minerals like amphiboles (hornblende) and biotite in the coastal dune sands also supports the effect of metamorphic-plutonic source rocks. The new tectonic discriminant-function diagrams suggest that the coastal dune sands were deposited in a passive margin of a synrift basin. The results provide a good evidence for the extension in the Red Sea rift system during Oligocene-post Pliocene, which is consistent with the general geology of Egypt.

  12. Congenital heart defects in molecularly proven Kabuki syndrome patients.

    Science.gov (United States)

    Digilio, Maria Cristina; Gnazzo, Maria; Lepri, Francesca; Dentici, Maria Lisa; Pisaneschi, Elisa; Baban, Anwar; Passarelli, Chiara; Capolino, Rossella; Angioni, Adriano; Novelli, Antonio; Marino, Bruno; Dallapiccola, Bruno

    2017-11-01

    The prevalence of congenital heart defects (CHD) in Kabuki syndrome ranges from 28% to 80%. Between January 2012 and December 2015, 28 patients had a molecularly proven diagnosis of Kabuki syndrome. Pathogenic variants in KMT2D (MLL2) were detected in 27 patients, and in KDM6A gene in one. CHD was diagnosed in 19/27 (70%) patients with KMT2D (MLL2) variant, while the single patient with KDM6A change had a normal heart. The anatomic types among patients with CHD included aortic coarctation (4/19 = 21%) alone or associated with an additional CHD, bicuspid aortic valve (4/19 = 21%) alone or associated with an additional CHD, perimembranous subaortic ventricular septal defect (3/19 = 16%), atrial septal defect ostium secundum type (3/19 = 16%), conotruncal heart defects (3/19 = 16%). Additional CHDs diagnosed in single patients included aortic dilatation with mitral anomaly and hypoplastic left heart syndrome. We also reviewed CHDs in patients with a molecular diagnosis of Kabuki syndrome reported in the literature. In conclusion, a CHD is detected in 70% of patients with KMT2D (MLL2) pathogenic variants, most commonly left-sided obstructive lesions, including multiple left-sided obstructions similar to those observed in the spectrum of the Shone complex, and septal defects. Clinical management of Kabuki syndrome should include echocardiogram at the time of diagnosis, with particular attention to left-sided obstructive lesions and mitral anomalies, and annual monitoring for aortic arch dilatation. © 2017 Wiley Periodicals, Inc.

  13. Provenance based data integrity checking and verification in cloud environments.

    Directory of Open Access Journals (Sweden)

    Muhammad Imran

    Full Text Available Cloud computing is a recent tendency in IT that moves computing and data away from desktop and hand-held devices into large scale processing hubs and data centers respectively. It has been proposed as an effective solution for data outsourcing and on demand computing to control the rising cost of IT setups and management in enterprises. However, with Cloud platforms user's data is moved into remotely located storages such that users lose control over their data. This unique feature of the Cloud is facing many security and privacy challenges which need to be clearly understood and resolved. One of the important concerns that needs to be addressed is to provide the proof of data integrity, i.e., correctness of the user's data stored in the Cloud storage. The data in Clouds is physically not accessible to the users. Therefore, a mechanism is required where users can check if the integrity of their valuable data is maintained or compromised. For this purpose some methods are proposed like mirroring, checksumming and using third party auditors amongst others. However, these methods use extra storage space by maintaining multiple copies of data or the presence of a third party verifier is required. In this paper, we address the problem of proving data integrity in Cloud computing by proposing a scheme through which users are able to check the integrity of their data stored in Clouds. In addition, users can track the violation of data integrity if occurred. For this purpose, we utilize a relatively new concept in the Cloud computing called "Data Provenance". Our scheme is capable to reduce the need of any third party services, additional hardware support and the replication of data items on client side for integrity checking.

  14. Identifying provenance-specific features of detrital heavy mineral assemblages in sandstones

    Science.gov (United States)

    Morton, Andrew C.; Hallsworth, Claire

    1994-05-01

    The composition of heavy mineral assemblages in sandstones may be heavily influenced by processes operating during transport, deposition and diagenesis. As a consequence, conventional heavy mineral data may not be a reliable guide to the nature of sediment source material. Certain features of heavy mineral suites, however, are inherited directly from the source area without significant modification, such as the varietal characteristics of individual mineral species. This paper describes an alternative approach to varietal studies that concentrates on relative abundances of minerals that are stable during diagenesis and have similar hydraulic behaviour. Ratios of apatite to tourmaline, TiO 2 minerals to zircon, monazite to zircon, and chrome spinel to zircon provide a good reflection of the source rock characteristics, because they are comparatively immune to alteration during the sedimentary cycle. These ratios are described as index values (ATi, RZi, MZi and CZi, respectively). This approach avoids some of the practical problems associated with varietal studies, such as the need to make subjective decisions about mineral properties or to use advanced analytical techniques that may not be accessible to the analyst. It also makes use of more components of the heavy mineral suite and thus provides a more balanced view of provenance characteristics. The use of these ratios is illustrated with examples from Upper Jurassic sandstones in the Outer Moray Firth area of the UK continental shelf and Triassic sandstones from onshore and offshore UK. Heavy mineral indices, notably ATi and MZi, show marked variations in Upper Jurassic Piper sandstones of the Outer Moray Firth. Main Piper sandstones have lower ATi and MZi values compared with Supra Piper sandstones, indicating significant stratigraphic evolution of provenance. The UK Triassic shows major regional variations in a number of index values, including ATi, MZi and CZi, demonstrating that sediment was supplied from

  15. CASE REPORT MRI findings in proven Mycobacterium tuberculosis ...

    African Journals Online (AJOL)

    involvement of multiple vertebral segments of the spine. • absence of reactive sclerosis. Materials and methods. We identified all patients who had vertebral biopsies for suspected TB spondylitis, from July 2002 until November 2005. Of these, we selected all patients who had histology results confirming TB spondylitis, and a.

  16. Armes provenant de tombes celtes d’un site inconnu

    Directory of Open Access Journals (Sweden)

    Popović Petar

    2010-01-01

    Full Text Available En automne 2003, lors d’un contrôle effectué à la frontière entre la Serbie et la Hongrie et en application de la loi sur la protection des biens culturels, les autorités de police ont confisqué à X une certaine quantité d’objets archéologiques en fer qui ont été confiés à la garde du Musée national de Belgrade. La plus grande partie de cette saisie, que l’on suppose être constituée de trouvailles originaires du Srem, était constituée d’armes celtes présentant divers degrés de conservation (Pl. I-III. Il s’agit de trois épées pliées avec leurs fourreaux, deux anneaux de ceinturon, six fers de lance, deux talons de lance, trois umbos dont un avec manipule en fer, deux grands coutelas, deux rasoirs, trois couteaux recourbés et un bracelet. Au vue de la nature du matériel en question il est permis d’en conclure que ces objets proviennent de tombes pillées, appartenant peut-être à une grande nécropole des Scordisques, qui correspondrait à La Tène Moyenne (LT C2, soit la première moitié et le milieu du IIe siècle av. n. è. En l’absence d’autres données on ne peut que supposer qu’il s’agit, pour le moins, de trois sépultures distinctes, en soulignant que ce matériel peut déjà être rangé parmi les plus remarquables panoplies de guerriers pour la période La Tène Moyenne provenant du territoire des Scordisques. Simultanément, il pourrait s’agir d’un excellent exemple du type d’armement des Celtes de l’Est pour cette époque.

  17. FDG uptake in the pathologically proven papillary thyroid cancer

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Tae Sung; Yun, Mi Jin; Cho, Arthur; Lee, Jong Doo [Yonsei University College of Medicine, Seoul (Korea, Republic of)

    2007-02-15

    Metastatic thyroid cancers with I-131 uptake have been known to show no increase of FDG uptake whereas those without I-131 uptake tend to demonstrate increased uptake on PET. In this study, we evaluated the degree of FDG uptake in primary thyroid cancers of papillary histology before surgery. Forty FDG PET studies were performed on the patients who had papillary cancer proven by fine needle aspiration. The degree of FDG uptake was visually categorized as positive or negative (positive if the tumor showed discernible FDG; negative if the tumor didn't) and the peak standard uptake value (peak SUV) of the papillary thyroid cancer (PTC) were compared with the size of PTC. The mean size of 26 PTC with positive FDG uptake was 1.9{+-} 1.4 cm (0.5 {approx} 5 cm). In 13 PTC with negative FDG uptake, the mean size of those was 0.5 {+-} 0.2 cm (0.2 {approx} 0.9 cm). All PTC larger than 1 cm (2.5 {+-}1.4 cm, 1 {approx} 5 cm) have positive FDG uptake (peak SUV = 6.4 {+-} 5.7, 1.7 {approx} 22.7). Among the micropapillary thyroid cancer (microPTC; PTC smaller than 1 cm), 8 microPTC show positive FDG uptake (peak SUV = 2.9 {+-} 1.3, 1.7 {approx} 5.5), while 13 microPTC show negative finding (peak SUV 1.3 {+-} 0.2, 1.1{approx} 1.7). The size of microPTC with positive FDG uptake is significantly larger than that of microPTC with negative FDG uptake (0.7 {+-} 0.1cm vs 0.4 {+-} 0.2 cm, {rho} = 0.01). All PTCs larger than 1cm show positive FDG uptake in our study. In other words, thyroid lesions larger than 1cm with negative FDG uptake are unlikely to be PTC. So far, only poorly differentiated thyroid cancers are known to show increased FDG uptake. Our results seem to be contradictory to what is known in the literature. Further study is needed to understand better the significance of increased FDG uptake in PTC in relation to expression of NIS and GLUT.

  18. Effects of provenance and seed size on seedling survival and mophology of Quercus pontica

    Directory of Open Access Journals (Sweden)

    Yusuf Aksu

    2015-11-01

    Full Text Available This study was designed to investigate the effect of provenance and seed size on seedling survival and growth of Quercus pontica. The study showed that seed parameters showed significant differences among provenances. Provenance and seed size affected seedling survival and seedling morphology. Bigger seed size increased seedling survival, and also the large sized seed showed significant higher seedling height, root dry weight, shoot dry weight, and Dickson Quality Index in 1+0 seedlings.

  19. On the Expressiveness of Implicit Provenance in Query and Update Languages

    OpenAIRE

    Buneman, Peter; Cheney, James; Vansummeren, Stijn

    2008-01-01

    Information describing the origin of data, generally referred to as provenance, is important in scientific and curated databases where it is the basis for the trust one puts in their contents. Since such databases are constructed using operations of both query and update languages, it is of paramount importance to describe the effect of these languages on provenance. In this article we study provenance for query and update languages that are closely related to SQL, and compare two ways in wh...

  20. Geisinger's ProvenCare methodology: driving performance improvement within a shared governance structure.

    Science.gov (United States)

    Nolan, Ruth; Wary, Andrea; King, Megan; Laam, Leslie A; Hallick, Susan

    2011-05-01

    Many performance improvement projects fail because they occur in parallel to the organization's shared governance structure. Leveraging the full potential of its nursing shared governance structure, Geisinger Health System's ProvenCare methodology harnessed the full potential of its staff nurses to create truly reliable workflows that benefit patients and that the team finds professionally satisfying. Using ProvenCare Perinatal and its smoking cessation education intervention and outcomes as an example, the authors describe the ProvenCare methodology.

  1. PERFORMANCE OF 28-YEAR-OLD PROVENANCES OF LIQUIDAMBAR STYRACIFLUA AT TWO SITES IN WESTERN KENYA

    OpenAIRE

    Joram M. E. Mbinga; Ebby Chagala-Odera

    2015-01-01

    The phenotypic variation in growth of ten 28-year-old Liquidambar styraciflua provenances was studied at two sites, Lugari and Kakamega in Western Kenya. The trial at each site was established in a Randomized Block Design with the ten provenances replicated in four blocks. Each block had ten square plots corresponding to the ten provenances and each plot had thirty six trees. Analysis of growth data gave results which showed a significant difference (P

  2. Leaf morphometric characteristics variability of different beech provenances in juvenile development stage

    Directory of Open Access Journals (Sweden)

    Šijačić-Nikolić Mirjana

    2013-01-01

    Full Text Available The taxonomic status of beech from the Balkan Peninsula is not yet clearly defined. There is no agreement among different authors about the morphological characteristics discriminating between the Balkan and European and/or Eastern beech. For most characteristics, the mean values are different but the ranges of variation overlap considerably. Provenance trial of beech established in Serbia, at the locality Debeli Lug, has provided an opportunity for research of interprovenance variability at the level of leaf morphometric characteristics in juvenile development stage. Research included 10 provenances originating from the Western Balkans (Serbian provenance 36 and 38; Croatian provenance 24 and 25; Bosnian provenance 30 and 32 and from Central Europe (German provenance 47 and 49; Austrian provenance 56 and Hungarian provenance 42, where following morphometric characteristics were analyzed: leaf length (Ll, leaf width (Lw, petiole lenght (Pl, leaf base width on 1 cm (Blw, number of veins - left (Vl, number of veins - right (Vr, distance between 3rd and 4th vein - left (Dv 3-4. The results of this research show existence of clear differentiation among provenances from the Western Balkan and from Central Europe, from the point of leaf dimensions, number of veins and leaf base width. [Projekat Ministarstva nauke Republike Srbije, br. TR31041: Establishment of Wood Plantations Intended for Afforestation of Serbia i br. 43007: Studying climate change and its influence on the environment: impacts, adaptation and mitigation

  3. Growth dynamics variation of different larch provenances under the mountain conditions in Poland

    Energy Technology Data Exchange (ETDEWEB)

    Kulej, M. [Univ. of Agriculture, Cracow (Poland). Section of Seed Production and Selection

    1995-12-31

    The results of 25-year investigations based on measurements and statistical analysis concerning the growth dynamics variation of larch provenances from the entire area of Poland are reported in this paper. This is the first larch provenance experiment in Poland under mountain conditions. The results obtained showed a significant variability among the provenances tested as regards the basic growth characters (height, d.b.h., growth index) at the age of 5, 8, 11, 15, 20 and 25 years. The larch from Klodzko and Proszkow turned out to be the best in respect of growth during the entire 25-years period. Decidedly bad were provenances from Marcule, Grojec, Rawa mazowiecka and Kroscienko. We cannot forecast the future growth of larch when trees are 5-years old since such prognosis may carry an error. However, on the basis of the results obtained it may be concluded that when trees are about 8 years old the stabilization of the position of individual provenances as regards growth takes place. The height growth curves for the individual provenances during the 25-years period (with exception of the provenance from Marcule) fall within the interval {+-} 0,5S from the compensated curve for the entire population studied. All larch provenances in the experiment had reached the height growth culmination. A greatest differentiation in respect of this character occurred in case of the provenances from Sudetes. 27 refs, 4 figs, 8 tabs

  4. Close or not so close? Provenance studies of megalithic monuments from Alentejo (Portugal)

    Science.gov (United States)

    Boaventura, R.; Moita, P.

    2012-04-01

    There has been a significant amount of studies about megalithic tombs conducted in the Alentejo region. However the geological provenance of monoliths used in the construction of those tombs usually was not a priority among researchers with rare exceptions (Dehn, Kalb and Vortisch, 1991; Boaventura, 2000). Recent studies of dolmens (Oliveira, 1997 and 2006; Gonçalves, 2003) refer only to a brief characterization of rocks, such as "granite or schist slabs", highlighting certain types if the geological stratum is identical or not to the stone blocks. On the other hand, when the type of raw material appears to be similar with the bedrock, it is common and empirically assumed its local provenance. With the aim of testing and expand the knowledge about the provenance of the slabs used in the construction of megalithic tombs, several lithic samples from dolmen slabs and outcrops in their surroundings were collected for analysis and comparison. The samples were characterized by petrographic studies in thin section as well with a geochemical analyses performed by XRF that gives major elements as well some trace elements. The dolmens tested for this project are located roughly between the northeast to west of the town of Monforte (Upper region of Alentejo, Portugal) and are named, from south to north, as Serrinha, Rabuje group (1 to 5), Geodésico de Besteiros 3 and Velho. The field work and petrographic studies revealed that the slabs are constituted mainly by several types of granitoids (gnaissic, red, white, tonalitic), amphibolites and mottled schist shale. The comparison of chemical analyses between slabs and selected outcrops revealed that the provenances are in most of the cases from the nearby geological stratum. In fact, major elements (e.g. MgO, SiO2, CaO) as well trace elements (e.g. Sr, Y, Zr, Nb) compositions are similar on slab samples and in rocks from the outcrops. If in terms of major elements a similarity was already expectable, or easier to obtain, the

  5. Tracing the depositional history of Kalimantan diamonds by zircon provenance and diamond morphology studies

    Science.gov (United States)

    Kueter, Nico; Soesilo, Joko; Fedortchouk, Yana; Nestola, Fabrizio; Belluco, Lorenzo; Troch, Juliana; Wälle, Markus; Guillong, Marcel; Von Quadt, Albrecht; Driesner, Thomas

    2016-11-01

    Diamonds in alluvial deposits in Southeast Asia are not accompanied by indicator minerals suggesting primary kimberlite or lamproite sources. The Meratus Mountains in Southeast Borneo (Province Kalimantan Selatan, Indonesia) provide the largest known deposit of these so-called ;headless; diamond deposits. Proposals for the origin of Kalimantan diamonds include the adjacent Meratus ophiolite complex, ultra-high pressure (UHP) metamorphic terranes, obducted subcontinental lithospheric mantle and undiscovered kimberlite-type sources. Here we report results from detailed sediment provenance analysis of diamond-bearing Quaternary river channel material and from representative outcrops of the oldest known formations within the Alino Group, including the diamond-bearing Campanian-Maastrichtian Manunggul Formation. Optical examination of surfaces of diamonds collected from artisanal miners in the Meratus area (247 stones) and in West Borneo (Sanggau Area, Province Kalimantan Barat; 85 stones) points toward a classical kimberlite-type source for the majority of these diamonds. Some of the diamonds host mineral inclusions suitable for deep single-crystal X-ray diffraction investigation. We determined the depth of formation of two olivines, one coesite and one peridotitic garnet inclusion. Pressure of formation estimates for the peridotitic garnet at independently derived temperatures of 930-1250 °C are between 4.8 and 6.0 GPa. Sediment provenance analysis includes petrography coupled to analyses of detrital garnet and glaucophane. The compositions of these key minerals do not indicate kimberlite-derived material. By analyzing almost 1400 zircons for trace element concentrations with laser ablation ICP-MS (LA-ICP-MS) we tested the mineral's potential as an alternative kimberlite indicator. The screening ultimately resulted in a small subset of ten zircons with a kimberlitic affinity. Subsequent U-Pb dating resulting in Cretaceous ages plus a detailed chemical reflection make

  6. Querying Provenance Information: Basic Notions and an Example from Paleoclimate Reconstruction

    Science.gov (United States)

    Stodden, V.; Ludaescher, B.; Bocinsky, K.; Kintigh, K.; Kohler, T.; McPhillips, T.; Rush, J.

    2016-12-01

    Computational models are used to reconstruct and explain past environments and to predict likely future environments. For example, Bocinsky and Kohler have performed a 2,000-year reconstruction of the rain-fed maize agricultural niche in the US Southwest. The resulting academic publications not only contain traditional method descriptions, figures, etc. but also links to code and data for basic transparency and reproducibility. Examples include ResearchCompendia.org and the new project "Merging Science and Cyberinfrastructure Pathways: The Whole Tale." Provenance information provides a further critical element to understand a published study and to possibly extend or challenge the findings of the original authors. We present different notions and uses of provenance information using a computational archaeology example, e.g., the common use of "provenance for others" (for transparency and reproducibility), but also the more elusive but equally important use of "provenance for self". To this end, we distinguish prospective provenance (a.k.a. workflow) from retrospective provenance (a.k.a. data lineage) and show how combinations of both forms of provenance can be used to answer different kinds of important questions about a workflow and its execution. Since many workflows are developed using scripting or special purpose languages such as Python and R, we employ an approach and toolkit called YesWorkflow that brings provenance modeling, capture, and querying into the realm of scripting. YesWorkflow employs the basic W3C PROV standard, as well as the ProvONE extension for sharing and exchanging retrospective and prospective provenance information, respectively. Finally, we argue that the utility of provenance information should be maximized by developing different kinds provenance questions and queries during the early phases of computational workflow design and implementation.

  7. Geoscience Australia's enterprise application of provenance standards and systems for physical and digital objects

    Science.gov (United States)

    Kemp, C.; Car, N. J.

    2016-12-01

    Geoscience Australia (GA) is a government agency that provides advice on the geology and geography of Australia. It is the custodian of many digital and physical datasets of national significance. For several years GA has been implementing an enterprise approach to provenance management. The goal for transparency and reproducibility for all of GA's information products; an objective supported at the highest levels and explicitly listed in its Science Principles. Currently GA is finalising a set of enterprise tools to assist with provenance management and rolling out provenance reporting to different science areas. GA has adopted or developed: provenance storage systems; provenance collection code libraries (for use within automated systems); reporting interfaces (for manual use) and provenance representation capability within legacy catalogues. Using these tools within GA's science areas involves modelling the scenario first and then assessing whether the area has its data managed in such a way that allows links to data within provenance to be resolvable in perpetuity. We don't just want to represent provenance (demonstrating transparency), we want to access data via provenance (allowing for reproducibility). A subtask of GA's current work is to link physical samples to information products (datasets, reports, papers) by uniquely and persistently identifying samples using International GeoSample Numbers and then modelling automated & manual laboratory workflows and associated tasks, such as data delivery to corporate databases using the W3C's PROV Data Model. We use PROV DM throughout our modelling and systems. We are also moving to deliver all sample and digital dataset metadata across the agency in the Web Ontology Language (OWL) and exposing it via Linked Data methods in order to allow Semantic Web querying of multiple systems allowing provenance to be leveraged using as a single method and query point. Through the Science First Transformation Program GA is

  8. Lowering the Barrier to Reproducible Research by Publishing Provenance from Common Analytical Tools

    Science.gov (United States)

    Jones, M. B.; Slaughter, P.; Walker, L.; Jones, C. S.; Missier, P.; Ludäscher, B.; Cao, Y.; McPhillips, T.; Schildhauer, M.

    2015-12-01

    Scientific provenance describes the authenticity, origin, and processing history of research products and promotes scientific transparency by detailing the steps in computational workflows that produce derived products. These products include papers, findings, input data, software products to perform computations, and derived data and visualizations. The geosciences community values this type of information, and, at least theoretically, strives to base conclusions on computationally replicable findings. In practice, capturing detailed provenance is laborious and thus has been a low priority; beyond a lab notebook describing methods and results, few researchers capture and preserve detailed records of scientific provenance. We have built tools for capturing and publishing provenance that integrate into analytical environments that are in widespread use by geoscientists (R and Matlab). These tools lower the barrier to provenance generation by automating capture of critical information as researchers prepare data for analysis, develop, test, and execute models, and create visualizations. The 'recordr' library in R and the `matlab-dataone` library in Matlab provide shared functions to capture provenance with minimal changes to normal working procedures. Researchers can capture both scripted and interactive sessions, tag and manage these executions as they iterate over analyses, and then prune and publish provenance metadata and derived products to the DataONE federation of archival repositories. Provenance traces conform to the ProvONE model extension of W3C PROV, enabling interoperability across tools and languages. The capture system supports fine-grained versioning of science products and provenance traces. By assigning global identifiers such as DOIs, reseachers can cite the computational processes used to reach findings. And, finally, DataONE has built a web portal to search, browse, and clearly display provenance relationships between input data, the software

  9. Glucose test provenance recording in UK primary care: was that fasted or random?

    Science.gov (United States)

    McGovern, A P; Fieldhouse, H; Tippu, Z; Jones, S; Munro, N; de Lusignan, S

    2017-01-01

    To describe the proportion of glucose tests with unrecorded provenance in routine primary care data and identify the impact on clinical practice. A cross-sectional analysis was conducted of blood glucose measurements from the Royal College of General Practitioner Research and Surveillance Centre database, which includes primary care records from >100 practices across England and Wales. All blood glucose results recorded during 2013 were identified. Tests were grouped by provenance (fasting, oral glucose tolerance test, random, none specified and other). A clinical audit in a single primary care practice was also performed to identify the impact of failing to record glucose provenance on diabetes diagnosis. A total of 2 137 098 people were included in the cross-sectional analysis. Of 203 350 recorded glucose measurements the majority (117 893; 58%) did not have any provenance information. The most commonly reported provenance was fasting glucose (75 044; 37%). The distribution of glucose values where provenance was not recorded was most similar to that of fasting samples. The glucose measurements of 256 people with diabetes in the audit practice (size 11 514 people) were analysed. The initial glucose measurement had no provenance information in 164 cases (64.1%). A clinician questioned the provenance of a result in 41 cases (16.0%); of these, 14 (34.1%) required repeating. Lack of provenance led to delays in the diagnosis of diabetes [median (range) 30 (3-614) days]. The recording of glucose provenance in UK primary care could be improved. Failure to record provenance causes unnecessary repeated testing, delayed diagnosis and wasted clinician time. © 2016 The Authors. Diabetic Medicine published by John Wiley & Sons Ltd on behalf of Diabetes UK.

  10. Dust provenance change of Chinese Loess Plateau during the past 7Ma

    Science.gov (United States)

    Zhang, Hanzhi

    2017-04-01

    Aeolian deposit (e.g. loess, paleo-soil and Red Clay) in Chinese Loess Plateau is one of the most valuable climate archives on land in late Cenozoic. Surveying the origin of these aeolian sediments is essential for the interpretation of the climate proxies potentially over the past 25Ma. However, disputes still exist on whether or not there is shift of dust origin in tectonic time scale or glacial-interglacial time scale. Detrital zircon dating method is applied on aeolian sediments of Lantian site in south part of Chinese Loess Plateau, which is at the foot of Qinling Mountain in order to reveal the provenance evolution during the past 7Ma. The results indicate that the composition of aeolian sediments shifted at around 2.6 Ma. Detrital zircon age reveals that the tertiary Red Clay is mainly derived from the North Tibet Plateau and Qinling Mountain. This indicates that the origin area for the tertiary Red Clay is relative local. Quaternary Loess of this site is basically mixture of sediments from North Tibet Plateau and Gobi Altay Mountains. The composition of local sediments from Qinling Mountains is relatively low. Sediment in L1 layer contains the highest proportions of Gobi Altay Mountains material, which show completely different pattern from other loess sediments. Besides this, there are no consistent composition shifts between glacial and interglacial periods. The time of dust origin shift is in coincident with initiation of the Northern Hemisphere ice sheet. This suggests that the onset of the Northern Hemisphere ice sheet enhanced the surface erosion of the area of Gobi Altay Mountains. This process contributed more detrital material to be blown to the air. Furthermore, enhanced winter monsoon played an important role in the transportation of dust material. However, the reason for the unique characteristics of loess in L1 is not clear.

  11. External beam milli-PIXE as analytical tool for Neolithic obsidian provenance studies

    Energy Technology Data Exchange (ETDEWEB)

    Constantinescu, B.; Cristea-Stan, D. [National Institute for Nuclear Physics and Engineering Horia Hulubei, Bucharest-Magurele (Romania); Kovács, I.; Szõkefalvi-Nagy, Z. [Wigner Research Centre for Phyics, Institute for Particle and Nuclear Physics, Budapest (Hungary)

    2013-07-01

    Full text: Obsidian is the most important archaeological material used for tools and weapons before metals appearance. Its geological sources are limited and concentrated in few geographical zones: Armenia, Eastern Anatolia, Italian Lipari and Sardinia islands, Greek Melos and Yali islands, Hungarian and Slovak Tokaj Mountains. Due to this fact, in Mesolithic and Neolithic periods obsidian was the first archaeological material intensively traded even at long distances. To determine the geological provenance of obsidian and to identify the prehistoric long-range trade routes and possible population migrations elemental concentration ratios can help a 101, since each geological source has its 'fingerprints'. In this work external milli-PIXE technique was applied for elemental concentration ratio determinations in some Neolithic tools found in Transylvania and in the lron Gales region near Danube, and on few relevant geological samples (Slovak Tokaj Mountains, Lipari,Armenia). In Transylvania (the North-Western part of Romania, a region surrounded by Carpathian Mountains), Neolithic obsidian tools were discovered mainly in three regions: North-West - Oradea (near the border with Hungary, Slovakia and Ukraine), Centre -Cluj and Southwest- Banat (near the border with Serbia). A special case is lron Gales - Mesolithic and Early Neolithic sites, directly related to the appearance of agriculture replacing the Mesolithic economy based on hunting and fishing. Three long-distance trade routes could be considered: from Caucasus Mountains via North of the Black Sea, from Greek islands or Asia Minor via ex-Yugoslavia area or via Greece-Bulgaria or from Central Europe- Tokaj Mountains in the case of obsidian. As provenance 'fingerprints', we focused on Ti to Mn, and Rb-Sr-Y-Zr ratios. The measurements were performed at the external milli-PIXE beam-line of the 5MV VdG accelerator of the Wigner RCP. Proton energy of 3MeV and beam currents in the range of 1 ±1 D

  12. An Inference-Based Framework to Manage Data Provenance in Geoscience Applications

    NARCIS (Netherlands)

    Huq, M.R.; Apers, Peter M.G.; Wombacher, Andreas

    Data provenance allows scientists to validate their model as well as to investigate the origin of an unexpected value. Furthermore, it can be used as a replication recipe for output data products. However, capturing provenance requires enormous effort by scientists in terms of time and training.

  13. Inferring Fine-Grained Data Provenance in Stream Data Processing: Reduced Storage Cost, High Accuracy

    NARCIS (Netherlands)

    Huq, M.R.; Wombacher, Andreas; Apers, Peter M.G.; Hameurlain, Abdelkader; Liddle, Stephen W.; Schewe, Klaus-Dieter; Zhou, Xiaofang

    Fine-grained data provenance ensures reproducibility of results in decision making, process control and e-science applications. However, maintaining this provenance is challenging in stream data processing because of its massive storage consumption, especially with large overlapping sliding windows.

  14. 77 FR 57637 - Culturally Significant Objects Imported for Exhibition Determinations: “The Place of Provenance...

    Science.gov (United States)

    2012-09-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF STATE Culturally Significant Objects Imported for Exhibition Determinations: ``The Place of Provenance--Regional... the exhibition ``The Place of Provenance--Regional Styles in Tibetan Painting,'' imported from abroad...

  15. Data Provenance Inference in Logic Programming: Reducing Effort of Instance-driven Debugging

    NARCIS (Netherlands)

    Huq, M.R.; Mileo, Alessandra; Wombacher, Andreas

    Data provenance allows scientists in different domains validating their models and algorithms to find out anomalies and unexpected behaviors. In previous works, we described on-the-fly interpretation of (Python) scripts to build workflow provenance graph automatically and then infer fine-grained

  16. Proven non-carriers in BRCA families have an earlier age of onset of breast cancer

    NARCIS (Netherlands)

    Vos, Janet; de Bock, G.H.; Teixeira, N.; van der Kolk, D.M.; Jansen, Liesbeth; Mourits, M.J.E.; Oosterwijk, J.C.

    Background: Risk estimates for proven non-carriers in BRCA mutation families are inconsistent for breast cancer and lacking for ovarian cancer. We aimed to assess the age-related risks for breast and ovarian cancer for proven non-carriers in these families. Methods: A consecutive cohort study

  17. Plastic Growth response of European beech provenances to dry site conditions

    NARCIS (Netherlands)

    Stojnic, S.; Sass, U.G.W.; Orlovic, S.; Matovic, B.; Eilmann, B.

    2013-01-01

    Due to projected global warming, there is a great concern about the ability of European beech to adapt to future climate conditions. Provenance trials provide an excellent basis to assess the potential of various provenances to adjust to given climate conditions. In this study we compared the

  18. Prov-O-Viz - Understanding the Role of Activities in Provenance

    NARCIS (Netherlands)

    Hoekstra, Rinke; Groth, Paul

    2015-01-01

    This paper presents PROV-O-Viz, aWeb-based visualizationtool for PROV-based provenance traces coming from various sources, that leverages Sankey Diagrams to reflect the flow of information through activities.We briefly discuss the advantages of this approach compared to other provenance

  19. PROV-O-Viz - Understanding the Role of Activities in Provenance

    NARCIS (Netherlands)

    Hoekstra, R.; Groth, P.; Ludäscher, B.; Plale, B.

    2015-01-01

    This paper presents PROV-O-Viz, a Web-based visualization tool for PROV-based provenance traces coming from various sources, that leverages Sankey Diagrams to reflect the flow of information through activities. We briefly discuss the advantages of this approach compared to other provenance

  20. Effect of light intensities on the photosynthetic characteristics of Abies holophylla seedlings from different provenances

    Directory of Open Access Journals (Sweden)

    Z. Yao

    2014-12-01

    Full Text Available The photosynthetic characteristics of Abies holophylla seedlings from six provenances under four artificial light intensities in a greenhouse (full light, 75.08%, 55.42%, and 30.38% of full light were studied to explore the underlying genetic differences in foliar photosynthesis. Varying light intensities significantly affected the foliar photosynthetic parameters of A. holophylla seedlings from six provenances. As the light intensity dropped, the foliar CO2 assimilation capacity of A. holophylla seedlings sharply decreased, and the foliar light utilization capacity significantly increased. Analysis of genetic variation showed highly significant differences in terms of CO2 assimilation capacity, light utilization capacity, and respiration depletion of A. holophylla seedlings among different provenances under different light intensities. The variations were mainly controlled by the genetic factors of the provenance itself. The obtained results revealed that different sensitivities of A. holophylla seedlings from different provenances in response to changed light intensities elicited significant differences in foliar photosynthesis among different provenances. The relationships between sensitivities and annual temperature difference, mean temperature in January, and mean annual evaporation of provenance were found to be the most closely related, which indicated that temperature range and effective precipitation of provenance were the main factors that affected photosynthetic plasticity of A. holophylla seedlings. 

  1. Five-year results of a ponderosa pine provenance study in the Black Hills

    Science.gov (United States)

    James L. Van Deusen

    1974-01-01

    Survival and height growth data were collected after five field growing seasons from ponderosa pine progeny representing 75 provenances of natural stands in the Great Plains and Northern Rockies. Results showed that trees from no other provenance survived significantly better or grew significantly taller than trees from the Black Hills. Trees from southern Colorado,...

  2. EFFECTS OF COLD STRATIFICATION AND GA3 ON GERMINATION OF ARBUTUS UNEDO SEEDS OF THREE PROVENANCES.

    Science.gov (United States)

    Pipinis, Elias; Stampoulidis, Athanasios; Milios, Elias; Kitikidou, Kyriaki; Radoglou, Kalliopi

    2017-01-01

    Arbutus unedo is a valuable Mediterranean shrub as an ornamental plant as well as fruit tree. Fresh fruits of A. unedo are a good source of antioxidants, of vitamins C, E and carotenoids and also are characterized by the high content of mineral elements. The effects of gibberellic acid (GA3) and cold stratification (CS) on seed germination performance were investigated in A. unedo seeds collected from three provenances in the Northern part of Greece. Seeds of each provenance were soaked in solutions of GA3 (500, 1000 or 2000 ppm) for 24 h and subsequently were subjected to CS at 3 - 5°C for 0, 1, 2, and 3 months. Non-stratified seeds of the three A. unedo provenances which were not treated with GA3 solutions exhibited very low germination. However, seed germination was significantly improved after a one-month period of CS. Similarly, the non-stratified seeds of all three provenances became non-dormant after the treatment with 2000 ppm GA3 and they germinated at high percentages. However, in untreated seeds with GA3, after a one-month CS period the seeds of the Pieria provenance exhibited higher germination percentage than that of Rodopi provenance seeds. Furthermore, in non-stratified seeds, the Pieria provenance seeds treated with GA3 germinated at higher percentages and more rapidly than those of the other two provenances. The results indicated that untreated seeds exhibited very low germination at 20/25°C. However, in all three provenances seed germinability was significantly improved by a one-month period of CS or treatment of seeds with 2000 ppm GA3. Furthermore, there was a considerable variability among seed provenances in response to the treatments which were applied.

  3. Diverging Drought Resistance of Scots Pine Provenances Revealed by Infrared Thermography

    Directory of Open Access Journals (Sweden)

    Hannes Seidel

    2016-08-01

    Full Text Available With recent climate changes, Scots pine (Pinus sylvestris L. forests have been affected by die-off events. Assisted migration of adapted provenances mitigates drought impacts and promotes forest regeneration. Although suitable provenances are difficult to identify by traditional ecophysiological techniques, which are time consuming and invasive, plant water status can be easily assessed by infrared thermography. Thus, we examined the stress responses of 2-year-old potted Scots pine seedlings from six provenances (Bulgaria, France, Germany, Italy, Poland, and Spain based on two thermal indices (crop water stress index and stomatal conductance index. Both indices were derived from infrared images during a six-week drought/control treatment in a greenhouse in the summer of 2013. The pines were monitored during the stress and subsequent recovery period. After controlling for fluctuating environmental conditions, soil moisture or treatment-specific water supply was the most important driver of drought stress. The stress magnitude and response to soil water deficit depended on provenance. Under moderate drought conditions, pines from western and eastern Mediterranean provenances (Bulgaria, France, and Spain expressed lower stress levels than those from both continental provenances (Germany and Poland. In pines from the Spanish and Bulgarian provenances, the stress level differences were significantly lower than in continental pines. Moreover, pines from continental provenances were less resilient (showed less recovery after the stress period than Mediterranean pines. Under extreme drought, all provenances were equally stressed with almost no significant differences in their thermal indices. Provenance-specific differences in drought resistance, which are associated with factors such as summer precipitation at the origin of Scots pine seedlings, may offer promising tracks of adaptation to future drought risks.

  4. Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description.

    Science.gov (United States)

    Sahoo, Satya S; Valdez, Joshua; Rueschman, Michael

    2016-01-01

    Scientific reproducibility is key to scientific progress as it allows the research community to build on validated results, protect patients from potentially harmful trial drugs derived from incorrect results, and reduce wastage of valuable resources. The National Institutes of Health (NIH) recently published a systematic guideline titled "Rigor and Reproducibility " for supporting reproducible research studies, which has also been accepted by several scientific journals. These journals will require published articles to conform to these new guidelines. Provenance metadata describes the history or origin of data and it has been long used in computer science to capture metadata information for ensuring data quality and supporting scientific reproducibility. In this paper, we describe the development of Provenance for Clinical and healthcare Research (ProvCaRe) framework together with a provenance ontology to support scientific reproducibility by formally modeling a core set of data elements representing details of research study. We extend the PROV Ontology (PROV-O), which has been recommended as the provenance representation model by World Wide Web Consortium (W3C), to represent both: (a) data provenance, and (b) process provenance. We use 124 study variables from 6 clinical research studies from the National Sleep Research Resource (NSRR) to evaluate the coverage of the provenance ontology. NSRR is the largest repository of NIH-funded sleep datasets with 50,000 studies from 36,000 participants. The provenance ontology reuses ontology concepts from existing biomedical ontologies, for example the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT), to model the provenance information of research studies. The ProvCaRe framework is being developed as part of the Big Data to Knowledge (BD2K) data provenance project.

  5. Histologically proven epithelial ingrowth in failed Descemet stripping automated endothelial keratoplasty (DSAEK) managed by repeat DSAEK.

    Science.gov (United States)

    Ghosh, Saurabh; Bonshek, Richard; Morgan, Stephen J

    2013-01-01

    To report a case of corneal graft failure due to epithelial ingrowth after an uneventful combined Descemet stripping automated endothelial keratoplasty (DSAEK) and phacoemulsification cataract surgery with intraocular lens implant treated successfully with a repeat DSAEK. A 77-year-old male patient underwent combined DSAEK and phacoemulsification with intraocular lens implant implantation for Fuchs' endothelial dystrophy plus cataract in the right eye. The donor cornea was cut on the Moria ALTK system and introduced using a suture pull-through technique. After an episode of endothelial rejection, the graft failed, with signs suggesting epithelial ingrowth. It was stripped from the host cornea using a Descemet's membrane stripper, and a Simcoe irrigation-aspiration cannula was used to remove all traces of interface material. The excised lenticule was examined histologically using a hematoxylin and eosin stain. The patient regained and maintained excellent visual acuity with no sign of recurrence of epithelial ingrowth. Histopathological evaluation of the donor tissue of the first graft showed epithelial ingrowth on the stromal surface of the graft and very few endothelial cells, in keeping with the diagnosis of graft failure. Epithelial ingrowth is a possible cause of endothelial graft failure, but histologically proven cases are rare. Surgical intervention can achieve successful clearance, with the potential for cure and an excellent outcome.

  6. Isolation and characterization of biosurfactant producing bacteria from Persian Gulf (Bushehr provenance).

    Science.gov (United States)

    Hassanshahian, Mehdi

    2014-09-15

    Biosurfactants are surface active materials that are produced by some microorganisms. These molecules increase biodegradation of insoluble pollutants. In this study sediments and seawater samples were collected from the coastline of Bushehr provenance in the Persian Gulf and their biosurfactant producing bacteria were isolated. Biosurfactant producing bacteria were isolated by using an enrichment method in Bushnell-Hass medium with diesel oil as the sole carbon source. Five screening tests were used for selection of Biosurfactant producing bacteria: hemolysis in blood agar, oil spreading, drop collapse, emulsification activity and Bacterial Adhesion to Hydrocarbon test (BATH). These bacteria were identified using biochemical and molecular methods. Eighty different colonies were isolated from the collected samples. The most biosurfactant producing isolates related to petrochemical plants of Khark Island. Fourteen biosurfactant producing bacteria were selected between these isolates and 7 isolates were screened as these were predominant producers that belong to Shewanella alga, Shewanella upenei, Vibrio furnissii, Gallaecimonas pentaromativorans, Brevibacterium epidermidis, Psychrobacter namhaensis and Pseudomonas fluorescens. The largest clear zone diameters in oil spreading were observed for G. pentaromativorans strain O15. Also, this strain has the best emulsification activity and reduction of surface tension, suggesting it is the best of thee isolated strains. The results of this study confirmed that there is high diversity of biosurfactant producing bacteria in marine ecosystem of Iran and by application of these bacteria in petrochemical waste water environmental problems can be assisted. Copyright © 2014 Elsevier Ltd. All rights reserved.

  7. Actitudes y percepciones de los docentes universitarios en el proceso de adopción de una innovación: la iniciativa OpenCourseWare en la Universidad de Valencia, España

    Directory of Open Access Journals (Sweden)

    Lourdes Margaix-Fontestad

    Full Text Available El proyecto OpenCourseWare, repositorio de recursos educativos en abierto, se inició en la Universidad de Valencia en 2008 y en 2009, sólo incluía 10 asignaturas, ninguna de ellas del área de Ciencias de la Salud. El objetivo de este trabajo es investigar las actitudes de los docentes de esta área así como sus percepciones con relación a este repositorio para determinar cuáles son las estrategias necesarias para extender su uso. Se parte de la teoría de la difusión de las innovaciones de Rogers y de un enfoque cualitativo a través del muestreo teórico, entrevistas semiestructuradas y codificación abierta. Los resultados indican la existencia de dos grandes grupos de profesores. Los adoptantes tempranos con una predisposición alta a participar en la iniciativa y con una percepción positiva de sus atributos y los mainstream o corriente principal más reacios a participar y con una percepción negativa respecto a alguno de sus atributos. La identificación de las características de estos dos grandes grupos marca las líneas de acción y de investigación futura en el ámbito del marketing y difusión, formación, sensibilización y motivación para extender el uso del OpenCourseWare.

  8. Comparative cost-effectiveness of the HeartWare versus HeartMate II left ventricular assist devices used in the United Kingdom National Health Service bridge-to-transplant program for patients with heart failure.

    Science.gov (United States)

    Pulikottil-Jacob, Ruth; Suri, Gaurav; Connock, Martin; Kandala, Ngianga-Bakwin; Sutcliffe, Paul; Maheswaran, Hendramoorthy; Banner, Nicholas R; Clarke, Aileen

    2014-04-01

    Patients with advanced heart failure may receive a left ventricular assist device (LVAD) as part of a bridge-to-transplant (BTT) strategy. The United Kingdom National Health Service (UK NHS) has financed a BTT program in which the predominant LVADs used have been the HeartMate II (HM II; Thoratec, Pleasanton, CA) and HeartWare (HW; HeartWare International, Inc. Framingham, MA). We aimed to compare the cost-effectiveness of the use of these within the NHS program. Individual patient data from the UK NHS Blood and Transplant Data Base were analyzed with Kaplan-Meier and competing outcomes methodologies. Outcomes were time to death, time to heart transplant (HT), and cumulative incidences of HT, death on LVAD support, and LVAD explantation. A semi-Markov multistate economic model was built to assess cost-effectiveness. The perspective was from the NHS, discount rates were 3.5%. Outcomes were quality-adjusted life-years (QALYs) and incremental cost (2011 prices in GB£) per QALY (ICER) for HW vs HM II. Survival was better with HW support than with HM II. Cumulative incidence of HT was low for both groups (11% at ~2 years). HW patients accrued 4.99 lifetime QALYs costing £258,913 ($410,970), HM II patients accrued 3.84 QALYs costing £231,871 ($368,048); deterministic and probabilistic ICERs for HW vs HM II were £23,530 ($37,349) and £20,799 ($33,014), respectively. Patients In the UK BTT program who received the HW LVAD had a better clinical outcome than those who received the HM II, and the HW was more cost-effective. This result needs to be reassessed in a randomized controlled trial comparing the 2 devices. Crown Copyright © 2014. Published by Elsevier Inc. All rights reserved.

  9. Recycled carpet materials for infrastructure applications.

    Science.gov (United States)

    2013-06-01

    The objective of this project was to develop novel composite materials for infrastructure applications by recycling nylon based waste carpets. These novel composites have been proven to possess improved mechanical and sound barrier properties to meet...

  10. Presenting Provenance Based on User Roles - Experiences from the ACOS System

    Science.gov (United States)

    West, P.; Michaelis, J.; Fox, P. A.; Zednik, S.; McGuinness, D. L.

    2010-12-01

    One goal of provenance is to provide users an understanding of the steps a system took to generate data products. Here, the level of detail captured by provenance becomes an important consideration. As detail is added, more questions can be hypothetically addressed. However, presenting significant provenance detail may also overwhelm end users, for one of two reasons: (i) the detail presented is irrelevant to the objectives, or (ii) the detail requires background knowledge a user lacks. Both of these challenges are present for data generated by the Mauna Loa Solar Observatory’s (MLSO) Advanced Coronal Observing System (ACOS). In ACOS, photometer-based readings are taken of solar activity and subsequently processed into data products consumable by end users. To fully understand these sequences of steps, background knowledge corresponding to various areas (e.g., astronomy, digital imaging, and ACOS specific techniques) is required by end users. This makes reviewing provenance difficult for users outside the ACOS development team, where varying degrees of background may be expected (ranging from outside domain experts in Solar Physics to citizen scientists). Likewise, even when steps taken by ACOS are understandable, they may provide undesired detail to an end user if presented. The work with ACOS involved the development of a Semantic Web based framework to selectively present provenance detail for data products in ACOS. Here, provenance is captured according to two sets of ontologies, the Proof Markup Language, which is an ontology based domain-independent provenance model, and a step ontology, designed to capture hierarchies of provenance steps. Used in combination, these ontology sets enable the creation of multiple levels of provenance, ranging from coarse to fine grained detail. In this setting, users may choose to expand/collapse provenance steps to view desired details. However, the specific provenance details a user initially sees is defined through

  11. Extending eScience Provenance with User-Submitted Semantic Annotations

    Science.gov (United States)

    Michaelis, J.; Zednik, S.; West, P.; Fox, P. A.; McGuinness, D. L.

    2010-12-01

    eScience based systems generate provenance of their data products, related to such things as: data processing, data collection conditions, expert evaluation, and data product quality. Recent advances in web-based technology offer users the possibility of making annotations to both data products and steps in accompanying provenance traces, thereby expanding the utility of such provenance for others. These contributing users may have varying backgrounds, ranging from system experts to outside domain experts to citizen scientists. Furthermore, such users may wish to make varying types of annotations - ranging from documenting the purpose of a provenance step to raising concerns about the quality of data dependencies. Semantic Web technologies allow for such kinds of rich annotations to be made to provenance through the use of ontology vocabularies for (i) organizing provenance, and (ii) organizing user/annotation classifications. Furthermore, through Linked Data practices, Semantic linkages may be made from provenance steps to external data of interest. A desire for Semantically-annotated provenance has been motivated by data management issues in the Mauna Loa Solar Observatory’s (MLSO) Advanced Coronal Observing System (ACOS). In ACOS, photomoeter-based readings are taken of solar activity and subsequently processed into final data products consumable by end users. At intermediate stages of ACOS processing, factors such as evaluations by human experts and weather conditions are logged, which could impact data product quality. If such factors are linked via user-submitted annotations to provenance, it could be significantly beneficial for other users. Likewise, the background of a user could impact the credibility of their annotations. For example, an annotation made by a citizen scientist describing the purpose of a provenance step may not be as reliable as a similar annotation made by an ACOS project member. For this work, we have developed a software package that

  12. Nature and provenance of the Beishan Complex, southernmost Central Asian Orogenic Belt

    Science.gov (United States)

    Zheng, Rongguo; Li, Jinyi; Xiao, Wenjiao; Zhang, Jin

    2017-08-01

    The ages and origins of metasedimentary rocks, which were previously mapped as Precambrian, are critical in rebuilding the orogenic process and better understanding the Phanerozoic continental growth in the Central Asian Orogenic Belt (CAOB). The Beishan Complex was widely distributed in the southern Beishan Orogenic Collage, southernmost CAOB, and their ages and tectonic affinities are still in controversy. The Beishan Complex was previously proposed as fragments drifted from the Tarim Craton, Neoproterozoic Block or Phanerozoic accretionary complex. In this study, we employ detrital zircon age spectra to constrain ages and provenances of metasedimentary sequences of the Beishan Complex in the Chuanshanxun area. The metasedimentary rocks here are dominated by zircons with Paleoproterozoic-Mesoproterozoic age ( 1160-2070 Ma), and yield two peak ages at 1454 and 1760 Ma. One sample yielded a middle Permian peak age (269 Ma), which suggests that the metasedimentary sequences were deposited in the late Paleozoic. The granitoid and dioritic dykes, intruding into the metasedimentary sequences, exhibit zircon U-Pb ages of 268 and 261 Ma, respectively, which constrain the minimum deposit age of the metasedimentary sequences. Zircon U-Pb ages of amphibolite (274 and 216 Ma) indicate that they might be affected by multi-stage metamorphic events. The Beishan Complex was not a fragment drifted from the Tarim Block or Dunhuang Block, and none of cratons or blocks surrounding Beishan Orogenic Collage was the sole material source of the Beishan Complex due to obviously different age spectra. Instead, 1.4 Ga marginal accretionary zones of the Columbia supercontinent might have existed in the southern CAOB, and may provide the main source materials for the sedimentary sequences in the Beishan Complex.

  13. Transfer Analysis of Provenance Trials Reveals Macroclimatic Adaptedness of European Beech (Fagus sylvatica L.

    Directory of Open Access Journals (Sweden)

    RASZTOVITS, Ervin

    2009-01-01

    Full Text Available The aim of the study was to analyse provenance tests of beech situated close to theSoutheastern-continental limits of the species, in order to develop a response model of adaptation andplasticity of populations on evolutionary-ecological basis, following sudden climatic changes as aresult of transplanting. Modelling of juvenile height was performed with the help of ecodistancevariables. The concept of transfer analysis and ecodistance is based on the hypothesis that phenotypicresponse to macroclimatic changes depends on the inherited adaptive potential of the population andon the magnitude and direction of experienced environmental change. In common garden experiments,the transfer to the planting site is interpreted as simulation of environmental change. The applicationof ecodistance of transfer for evaluating common garden experiments provides much neededquantitative information about response of tree populations to predicted climatic changes.The analysis of three field experiments of European beech in SE Europe invalidate earlier doubtsabout the existence of macroclimatic adaptation patterns in juvenile growth and justify restrictions ofuse of reproductive material on the basis of evolutionary ecology. The presented model illustrates thatresponse to climatic change is regionally divergent, depending on testing conditions and on hereditarytraits. In particular, climatic warming in the central-northern part of the range may lead to productionincrease. However, under the stressful and uncertain conditions at the lower (xeric limit of thespecies, growth depression and vitality loss are predicted. The deviating behaviour of higher elevationprovenances support their separate treatment.The results may be utilised in climate change adaptation and mitigation policy in forestry andnature conservation, to revise rules for use of reproductive material and also for validatingevolutionary and ecological hypotheses related to climate change effects.

  14. Applying the Karma Provenance tool to NASA's AMSR-E Data Production Stream

    Science.gov (United States)

    Ramachandran, R.; Conover, H.; Regner, K.; Movva, S.; Goodman, H. M.; Pale, B.; Purohit, P.; Sun, Y.

    2010-12-01

    Current procedures for capturing and disseminating provenance, or data product lineage, are limited in both what is captured and how it is disseminated to the science community. For example, the Advanced Microwave Scanning Radiometer for the Earth Observing System (AMSR-E) Science Investigator-led Processing System (SIPS) generates Level 2 and Level 3 data products for a variety of geophysical parameters. Data provenance and quality information for these data sets is either very general (e.g., user guides, a list of anomalous data receipt and processing conditions over the life of the missions) or difficult to access or interpret (e.g., quality flags embedded in the data, production history files not easily available to users). Karma is a provenance collection and representation tool designed and developed for data driven workflows such as the productions streams used to produce EOS standard products. Karma records uniform and usable provenance metadata independent of the processing system while minimizing both the modification burden on the processing system and the overall performance overhead. Karma collects both the process and data provenance. The process provenance contains information about the workflow execution and the associated algorithm invocations. The data provenance captures metadata about the derivation history of the data product, including algorithms used and input data sources transformed to generate it. As part of an ongoing NASA funded project, Karma is being integrated into the AMSR-E SIPS data production streams. Metadata gathered by the tool will be presented to the data consumers as provenance graphs, which are useful in validating the workflows and determining the quality of the data product. This presentation will discuss design and implementation issues faced while incorporating a provenance tool into a structured data production flow. Prototype results will also be presented in this talk.

  15. Fagus sylvatica L. provenances maintain different leaf metabolic profiles and functional response

    Science.gov (United States)

    Aranda, Ismael; Sánchez-Gómez, David; de Miguel, Marina; Mancha, Jose Antonio; Guevara, María Angeles; Cadahía, Estrella; Fernández de Simón, María Brígida

    2017-07-01

    Most temperate forest tree species will suffer important environmental changes as result of the climate change. Adaptiveness to local conditions could change at different sites in the future. In this context, the study of intra-specific variability is important to clarify the singularity of different local populations. Phenotypic differentiation between three beech provenances covering a wide latitudinal range (Spain/ES, Germany/DE and Sweden/SE), was studied in a greenhouse experiment. Non-target leaf metabolite profiles and ecophysiological response was analyzed in well-watered and water stressed seedlings. There was a provenance-specific pattern in the relative concentrations of some leaf metabolites regardless watering treatment. The DE and SE from the center and north of the distribution area of the species showed a clear differentiation from the ES provenance in the relative concentration of some metabolites. Thus the ES provenance from the south maintained larger relative concentration of some organic and amino acids (e.g. fumaric and succinic acids or valine and isoleucine), and in some secondary metabolites (e.g. kaempferol, caffeic and ferulic acids). The ecophysiological response to mild water stress was similar among the three provenances as a consequence of the moderate water stress applied to seedlings, although leaf N isotope composition (δ15N) and leaf C:N ratio were higher and lower respectively in DE than in the other two provenances. This would suggest potential differences in the capacity to uptake and post-process nitrogen according to provenance. An important focus of the study was to address for the first time inter-provenance leaf metabolic diversity in beech from a non-targeted metabolic profiling approach that allowed differentiation of the three studied provenances.

  16. Defining the "proven technology" technical criterion in the reactor technology assessment for Malaysia's nuclear power program

    Science.gov (United States)

    Anuar, Nuraslinda; Kahar, Wan Shakirah Wan Abdul; Manan, Jamal Abdul Nasir Abd

    2015-04-01

    Developing countries that are considering the deployment of nuclear power plants (NPPs) in the near future need to perform reactor technology assessment (RTA) in order to select the most suitable reactor design. The International Atomic Energy Agency (IAEA) reported in the Common User Considerations (CUC) document that "proven technology" is one of the most important technical criteria for newcomer countries in performing the RTA. The qualitative description of five desired features for "proven technology" is relatively broad and only provides a general guideline to its characterization. This paper proposes a methodology to define the "proven technology" term according to a specific country's requirements using a three-stage evaluation process. The first evaluation stage screens the available technologies in the market against a predefined minimum Technology Readiness Level (TRL) derived as a condition based on national needs and policy objectives. The result is a list of technology options, which are then assessed in the second evaluation stage against quantitative definitions of CUC desired features for proven technology. The potential technology candidates produced from this evaluation is further narrowed down to obtain a list of proven technology candidates by assessing them against selected risk criteria and the established maximum allowable total score using a scoring matrix. The outcome of this methodology is the proven technology candidates selected using an accurate definition of "proven technology" that fulfills the policy objectives, national needs and risk, and country-specific CUC desired features of the country that performs this assessment. A simplified assessment for Malaysia is carried out to demonstrate and suggest the use of the proposed methodology. In this exercise, ABWR, AP1000, APR1400 and EPR designs assumed the top-ranks of proven technology candidates according to Malaysia's definition of "proven technology".

  17. Magnetic properties contribution to the identification and provenance of marine sediments: distal IRD in the Galicia Interior Basin (NW Spain)

    Science.gov (United States)

    Plaza-Morlote, Maider; Rey, Daniel; Francisco Santos, Jose; Ribeiro, Sara; Bernabeu, Ana; Mohamed, Kais; Heslop, David; Rubio, Belén; Martins, Virginia

    2016-04-01

    This paper discusses the advantages of using a combined environmagnetic and geochemical approach to the provenance and characterization of distal IRDs occurring during the Last Glacial Period in core CI12PC3 from the Galicia Interior Basin (GIB). Six Heinrich layers (HL1-6) have been identified in the area in base to the detection of distinct populations of exotic magnetic mineral assemblages alien to the local/regional sedimentation environment. Their extension has been determined by Ca/Sr and Si/Sr ratios and their provenance by 143Nd/144Nd and 87Sr/86Sr isotopic ratios and FORCs. The sedimentary expression of HL is characterized by the presence of distal Ice Rafted Detritus (IRD). Distal IRD magnetic signatures in the GIB consist of (i) an increase of one order of magnitude in the peak amplitude of magnetic susceptibility from background values, (ii) a general coarsening of the magnetic grain size in a mineral assemblage dominated by titano-magnetites, (iii) FORC distributions pushing towards the coarse MD or PSD component, and (iv) thermomagnetic curves depicting the occurrence of several magnetite phases. These four features are very different from the fine-grained biogenic magnetic assemblages characterized by the combination of lower MS and higher coercivity values that dominate the predominant mixtures of the non-interacting SSD and PSD components in the non-IRD influenced background sedimentation. Our results show that the last 70.000 yr of sedimentation in the GIB were controlled by the relative contribution of local detrital material derived from the Iberian Variscan Chain and IRD alien material from the iceberg melting during the Heinrich Events. They also show two main IRD provenance fields: Europe and Canada. And that the later is more important for for HL1, HL2, HL4 and HL5. FORCs analysis complemented the isotopic information and provided a very unique information, indicating that glacial flour may not always have the same provenance as IRD and that

  18. Provenance of the heavy metals in sand sediments of the Oman Sea (Sistan and Baluchestan district

    Directory of Open Access Journals (Sweden)

    Maryam Soleimani

    2015-04-01

    Full Text Available Introduction Mineral composition of source rock is one of the most important factors for concentration and distribution of heavy metals in sediments. Therefore, study on distribution of these elements and the related minerals in sediments provides information about natural origin of elements. Moreover, the interpretation of origin and distribution of sandy sediments is considerably enhanced by mineralogical and geochemical studies of these sediments. The main objective of this research is to evaluate distribution of Zn, Cu, Sr, Cd, Fe and Mn in sand sediments of the Oman Sea, their relationship with mineral composition of the sediments and also determining their provenance. Materials and Methods Sampling of surface sediments of the Oman Sea was performed in 16 sampling stations. Heavy minerals and rock fragments of the sediments in fine and coarse sand sizes respectively were qualitatively and quantitatively studied by polarizing microscope (Folk, 1974; Pettijohn et al., 1981; Tucker, 1988. Concentration of the heavy metals were also analyzed by AAS method (Mico et al., 2008. Result Mineralogical composition of the studied sediments contain quartz, feldspars and heavy minerals in their order of abundances. The rock fragments consist of sedimentary, igneous and metamorphic in their order of frequencies as well. The concentrations of the studied heavy metals (in ppm in the sediments are Cd (1.42, Cu (9.99, Zn (36.72, Sr (181.18, Mn (377.33 and Fe (20247.55 in their order of abundances. Distribution of the Zn concentration generally shows decreasing trend from west of the study area to the Guatr Bay. The concentrations of Zn and Cu show close relationship with the frequencies of biotite and muscovite. The Cu concentration also shows positive correlation with the Zn and Fe concentrations. Distribution of the Sr and Cd concentrations is similar to variation of the calcium carbonate content. The Cd and Sr concentrations also show positive correlation

  19. Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program

    Science.gov (United States)

    Fu, Linyun; Ma, Xiaogang; Zheng, Jin; Goldstein, Justin; Duggan, Brian; West, Patrick; Aulenbach, Steve; Tilmes, Curt; Fox, Peter

    2014-05-01

    This poster will show how we used a case-driven iterative methodology to develop an ontology to represent the content structure and the associated provenance information in a National Climate Assessment (NCA) report of the US Global Change Research Program (USGCRP). We applied the W3C PROV-O ontology to implement a formal representation of provenance. We argue that the use case-driven, iterative development process and the application of a formal provenance ontology help efficiently incorporate domain knowledge from earth and environmental scientists in a well-structured model interoperable in the context of the Web of Data.

  20. Diverging drought resistance of Scots pine provenances revealed by infrared thermography and mortality

    Science.gov (United States)

    Seidel, Hannes; Schunk, Christian; Matiu, Michael; Menzel, Annette

    2016-04-01

    Climate warming and more frequent and severe drought events will alter the adaptedness and fitness of tree species. Especially, Scots pine forests have been affected above average by die-off events during the last decades. Assisted migration of adapted provenances might help alleviating impacts by recent climate change and successfully regenerating forests. However, the identification of suitable provenances based on established ecophysiological methods is time consuming, sometimes invasive, and data on provenance-specific mortality are lacking. We studied the performance, stress and survival of potted Scots pine seedlings from 12 European provenances grown in a greenhouse experiment with multiple drought and warming treatments. In this paper, we will present results of drought stress impacts monitored with four different thermal indices derived from infrared thermography imaging as well as an ample mortality study. Percent soil water deficit (PSWD) was shown to be the main driver of drought stress response in all thermal indices. In spite of wet and dry reference surfaces, however, fluctuating environmental conditions, mainly in terms of air temperature and humidity, altered the measured stress response. In linear mixed-effects models, besides PSWD and meteorological covariates, the factors provenance and provenance - PSWD interactions were included. The explanatory power of the models (R2) ranged between 0.51 to 0.83 and thus, provenance-specific responses to strong and moderate drought and subsequent recovery were revealed. However, obvious differences in the response magnitude of provenances to drought were difficult to explicitly link to general features such Mediterranean - continental type or climate at the provenances' origin. We conclude that seedlings' drought resistance may be linked to summer precipitation and their experienced stress levels are a.o. dependent on their above ground dimensions under given water supply. In respect to mortality, previous

  1. Data Provenance Hybridization Supporting Extreme-Scale Scientific WorkflowApplications

    Energy Technology Data Exchange (ETDEWEB)

    Elsethagen, Todd O.; Stephan, Eric G.; Raju, Bibi; Schram, Malachi; Macduff, Matt C.; Kerbyson, Darren J.; Kleese-Van Dam, Kerstin; Singh, Alok; Altintas, Ilkay

    2016-11-21

    As high performance computing (HPC) infrastructures continue to grow in capability and complexity, so do the applications that they serve. HPC and distributed-area computing (DAC) (e.g. grid and cloud) users are looking increasingly toward workflow solutions to orchestrate their complex application coupling, pre- and post-processing needs To gain insight and a more quantitative understanding of a workflow’s performance our method includes not only the capture of traditional provenance information, but also the capture and integration of system environment metrics helping to give context and explanation for a workflow’s execution. In this paper, we describe IPPD’s provenance management solution (ProvEn) and its hybrid data store combining both of these data provenance perspectives.

  2. Reactions of Adansonia digitata L. provenances to long-term stress at seedling stage

    DEFF Research Database (Denmark)

    Bouda, Z. H N; Bayala, J.; Jensen, J. S.

    2015-01-01

     % of field capacity were applied over a period of 18 months. While survival was unaffected by the stress treatments, provenances and water regimes significantly affected growth parameters, and plant dry matter accumulation was significantly reduced by water stress. Provenances had growth rates of diameter......The effects of drought stress on growth parameters and dry matter partitioning of seven provenances (six from West Africa and one from East Africa) of Adansonia digitata L. were assessed in a seedling experiment in Burkina Faso. Three water regimes corresponding to 100 % (control), 75 % and 50...... and height in response to stress. The fresh weight/dry weight ratio increased with increasing stress. In response to stress, shoot/root ratios decreased at the start of the experiment, but increased at the end, compared to the control. Differences between provenances were not correlated to environmental...

  3. Long-term outcomes of Japanese type 2 diabetic patients with biopsy-proven diabetic nephropathy

    National Research Council Canada - National Science Library

    Shimizu, Miho; Furuichi, Kengo; Toyama, Tadashi; Kitajima, Shinji; Hara, Akinori; Kitagawa, Kiyoki; Iwata, Yasunori; Sakai, Norihiko; Takamura, Toshinari; Yoshimura, Mitsuhiro; Yokoyama, Hitoshi; Kaneko, Shuichi; Wada, Takashi

    2013-01-01

    We evaluated the structural-functional relationships and the prognostic factors for renal events, cardiovascular events, and all-cause mortality in type 2 diabetic patients with biopsy-proven diabetic nephropathy...

  4. VisTrails is an open-source scientific workflow and provenance management system

    CSIR Research Space (South Africa)

    Mthombeni, Thabo DM

    2011-12-01

    Full Text Available VisTrails is an open-source scientific workflow and provenance management system that provides support for simulations, data exploration and visualization. Whereas workflows have been traditionally used to automate repetitive tasks, for applications...

  5. Provenance Description of Metadata Vocabularies for the Long-term Maintenance of Metadata

    Directory of Open Access Journals (Sweden)

    Chunqiu Li

    2017-03-01

    Full Text Available Purpose: The purpose of this paper is to discuss provenance description of metadata terms and metadata vocabularies as a set of metadata terms. Provenance is crucial information to keep track of changes of metadata terms and metadata vocabularies for their consistent maintenance. Design/methodology/approach: The W3C PROV standard for general provenance description and Resource Description Framework (RDF are adopted as the base models to formally define provenance description for metadata vocabularies. Findings: This paper defines a few primitive change types of metadata terms, and a provenance description model of the metadata terms based on the primitive change types. We also provide examples of provenance description in RDF graphs to show the proposed model. Research limitations: The model proposed in this paper is defined based on a few primitive relationships (e.g. addition, deletion, and replacement between pre-version and post-version of a metadata term. The model is simplified and the practical changes of metadata terms can be more complicated than the primitive relationships discussed in the model. Practical implications: Formal provenance description of metadata vocabularies can improve maintainability of metadata vocabularies over time. Conventional maintenance of metadata terms is the maintenance of documents of terms. The proposed model enables effective and automated tracking of change history of metadata vocabularies using simple formal description scheme defined based on widely-used standards. Originality/value: Changes in metadata vocabularies may cause inconsistencies in the long-term use of metadata. This paper proposes a simple and formal scheme of provenance description of metadata vocabularies. The proposed model works as the basis of automated maintenance of metadata terms and their vocabularies and is applicable to various types of changes.

  6. Flares in Biopsy-Proven Giant Cell Arteritis in Northern Italy

    OpenAIRE

    Restuccia, Giovanna; Boiardi, Luigi; Cavazza, Alberto; Catanoso, Mariagrazia; Macchioni, Pierluigi; Muratore, Francesco; Cimino, Luca; Aldigeri, Raffaella; Crescentini, Filippo; Pipitone, Nicol?; Salvarani, Carlo

    2016-01-01

    Abstract This study evaluated the frequency, timing, and characteristics of flares in a large cohort of Italian patients with biopsy-proven giant cell arteritis (GCA) and to identify factors at diagnosis able to predict the occurrence of flares. We evaluated 157 patients with biopsy-proven transmural GCA diagnosed and followed at the Rheumatology Unit of Reggio Emilia Hospital (Italy) for whom sufficient information was available from the time of diagnosis until at least 4 years of follow-up....

  7. 24 CFR 3280.503 - Materials.

    Science.gov (United States)

    2010-04-01

    ... 24 Housing and Urban Development 5 2010-04-01 2010-04-01 false Materials. 3280.503 Section 3280... DEVELOPMENT MANUFACTURED HOME CONSTRUCTION AND SAFETY STANDARDS Thermal Protection § 3280.503 Materials. Materials used for insulation shall be of proven effectiveness and adequate durability to assure that...

  8. Characterization and provenance of the building stones from Pompeii's archaeological site (southern Italy)

    Science.gov (United States)

    Balassone, G.; Kastenmeier, P.; di Maio, G.; Mormone, A.; Joachimski, M.

    2009-04-01

    Pompeii is one of the most famous and complex areas of archaeological investigation in the world and with a uniquely favorable state of preservation. Even if many studies have been devoted in time to many archaeological aspects of this ancient city, large-scale and detailed studies aimed at characterizing mineralogy, petrography and isotope geochemistry of the building stones are still lacking. The scope of the present research is to fill this gap, pointing to the definition of the provenance of the stony materials used for ancient constructions of the city of Pompeii and to the possible trade routes. This work is part of a large-scale survey carried out by the Deutsches Archäologisches Institut of Berlin, with the purposes of reconstructing the sources of raw materials of various archaeological sites of the Sarno Plain (e.g. Longola-Poggiomarino settlement, Nuceria, Stabiae, etc.) and consequently also the paleo-environments of this area during the Olocene (Seiler, 2006, 2008; Kastemeier and Seiler, 2007). We sampled all the litotypes with different macroscopic characteristics from various buildings according to location, age (time span VI century B.C. - I century A.D.) and utilization; the architectural buildings considered for this study are mainly represented public and religious buildings, houses and funerary monuments. As possible source areas, representative litotypes have been sampled from ancient pits and outcrops surrounding Pompeii as well. A set of 80 samples have been sampled by means of micro-drillings for mineralogical, petrographic and geochemical analyses, comprising optical microscopy, X-ray diffraction, inductively coupled plasma mass, X-ray fluorescence and C-O isotope geochemistry. Minero-petrographic and XRD studies of Pompeii rock samples have shown that at least ten different litologies occur as building stones, belonging to basaltic to tephritic lavas, pyroclasts (tuffs, scoriae, etc.) and sedimentary rocks (limestone, travertines

  9. Histologically proven epithelial ingrowth in failed Descemet stripping automated endothelial keratoplasty (DSAEK managed by repeat DSAEK

    Directory of Open Access Journals (Sweden)

    Ghosh S

    2013-05-01

    Full Text Available Saurabh Ghosh,1 Richard Bonshek,2 Stephen J Morgan1 1Sunderland Eye Infirmary, Sunderland, UK; 2National Specialist Ophthalmic Pathology Service (NSOPS Laboratory, Department of Histopathology, Manchester Royal Infirmary, Manchester, UK Purpose: To report a case of corneal graft failure due to epithelial ingrowth after an uneventful combined Descemet stripping automated endothelial keratoplasty (DSAEK and phacoemulsification cataract surgery with intraocular lens implant treated successfully with a repeat DSAEK. Methods: A 77-year-old male patient underwent combined DSAEK and phacoemulsification with intraocular lens implant implantation for Fuchs’ endothelial dystrophy plus cataract in the right eye. The donor cornea was cut on the Moria ALTK system and introduced using a suture pull-through technique. After an episode of endothelial rejection, the graft failed, with signs suggesting epithelial ingrowth. It was stripped from the host cornea using a Descemet’s membrane stripper, and a Simcoe irrigation-aspiration cannula was used to remove all traces of interface material. The excised lenticule was examined histologically using a hematoxylin and eosin stain. Result: The patient regained and maintained excellent visual acuity with no sign of recurrence of epithelial ingrowth. Histopathological evaluation of the donor tissue of the first graft showed epithelial ingrowth on the stromal surface of the graft and very few endothelial cells, in keeping with the diagnosis of graft failure. Conclusion: Epithelial ingrowth is a possible cause of endothelial graft failure, but histologically proven cases are rare. Surgical intervention can achieve successful clearance, with the potential for cure and an excellent outcome. Keywords: epithelial ingrowth, Descemet stripping automated endothelial keratoplasty, graft failure

  10. Application of INAA to provenance study of ceramics from Baixo Sao Francisco River, Sergipe, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Santos, J.O. [Centro Federal de Educacao Tecnologica de Sergipe (CEFET-SE/UNED Lagarto), Aracaju, SE (Brazil)]. E-mail: josantos@ipen.br; Munita, C.S.; Toyota, Rosimeiri G. [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil)]. E-mails: camunita@ipen.br; rosimeiritoy@yahoo.com.br; Vergne, C. [Museu de Arqueologia de Xingo (MAX), SE (Brazil)]. E-mail: Max@ufs.br

    2007-07-01

    The study of the physical and chemical characteristics of crafts, in association with historical and archaeological research, has allowed for the reconstruction of ancient community habits. Archaeological studies include several techniques to reconstruct ancient cultures. Since ceramics represent a sophisticated merging of previously separate domains of human knowledge and experience, these objects are studied by means of archaeometric methods. In recent years an interdisciplinary research program was started between Museu Arqueologico de Xingo (MAX) and Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP) to study the ancient ceramist cultures from Xingo region, located in Sergipe, Brazilian Northeast. Recent studies conducted in the area have showed the existence of an independent ceramist group without relation to the ceramist group well established in the Brazilian Northeast, Tupiguarani and Aratu. Instrumental neutron activation analysis, INAA, is a suitable technique for provenance studies. In this work the chemical composition of 103 samples: 30 clays and 73 ceramics from Barracao archaeological site, from Baixo Sao Francisco, were analyzed. This analysis allowed for the definition of compositional groups of ceramics according to the chemical similarities of ceramic paste, which reveals the raw material composition used in the manufacturing process by prehistoric man. The outliers were identified by means robust Mahalanobis distance. The results were interpreted by means of cluster analysis, principal components analysis and discriminant analysis. The results obtained in this work, in association with archaeological information, allowed for the identification of the ceramic groups in relation to the ceramist occupations of the Xingo area. This work contributes for the reconstruction of the Baixo Sao Francisco region communities and for the reconstitution of the Brazilian Northeast ceramist population. (author)

  11. Geochemical characteristics of sandstones from Cretaceous Garudamangalam area of Ariyalur, Tamilnadu, India: Implications of provenance and tectonic setting

    Science.gov (United States)

    K, Babu

    2017-06-01

    The Trichinopoly Group (later redesignated as Garudamangalam) has unconformable relationship with underlying Uttatur Group and is divided into lower Kulakanattam Formation and upper Anaipadi Formation. These calcareous sandstones are analysed major, trace and rare earth elements (REEs) to find out CIA, CIW, provenance and tectonic setting. The silica content of fossiliferous calcareous sandstone show wide variation ranging from 12.93 to 42.56%. Alumina content ranged from 3.49 to 8.47%. Higher values of Fe2O3 (2.29-22.02%) and low MgO content (0.75-2.44%) are observed in the Garudamangalam Formation. CaO (23.53-45.90) is high in these sandstones due to the presence of calcite as cementing material. Major element geochemistry of clastic rocks (Al2O3 vs. Na2O) plot and trace elemental ratio (Th/U) reveal the moderate to intense weathering of the source rocks. The Cr/Zr ratio of clastic rocks reveal with an average of 1.74 suggesting of felsic provenance. In clastic rocks, high ratios of \\sum LREE/\\sum HREE, La/Sc, Th/Sc, Th/Co, La/Co and low ratios of Cr/Zr, and positive Eu anomaly ranges from (Eu/Eu* = 1.87-5.30) reveal felsic nature of the source rocks.

  12. Annotating and embedding provenance in science data repositories to enable next generation science applications

    Science.gov (United States)

    McGuinness, D. L.; Fox, P.; Pinheiro da Silva, P.; Zednik, S.; Del Rio, N.; Ding, L.; West, P.; Chang, C.

    2008-12-01

    Recognizing the increased need for knowledge provenance in interdisciplinary eScience efforts, we have begun an effort to enhance a real-world data production pipeline and the resulting data services with semantic provenance. This work designing and implementing in an existing fielded virtual observatory setting has allowed us to collect key provenance requirements for a broad variety of end users. We have documented several image data pipelines for solar physics instruments at the Mauna Loa Solar Observatory and have documented almost 20 use cases covering usage from instrument scientists, observers, data analysts and managers, and end-user scientists. These use cases have guided our work developing an initial infrastructure that can be searched, queried, or browsed by these users. We use a multi-stage approach to provenance as data and information artifacts progress along processing pipelines. Our motivation, is that both the qualitative and quantitative measures of uncertainty may be vastly improved when treated in an end-to-end manner. This also reduces the likelihood that critical information is left behind or obscurely represented, making the later use of the data and information difficult or impossible. Another motivation is that provenance captured consistently at ingest time supports transparency of sources and propagation of credit for data generation, thereby increasing the likelihood of contribution and reuse. We present the current stages of implementation of our provenance infrastructure, tools and impact on what users are able to learn from the annotated information streams. The Semantic Provenance Capture in Data Ingest Systems (SPCDIS) project is an NSF/OCI/SDCI funded effort involving the High Altitude Observatory at NCAR, McGuinness Associates and the University of Michigan.

  13. The clinical and economic implications of specimen provenance complications in diagnostic prostate biopsies.

    Science.gov (United States)

    Wojno, Kirk; Hornberger, John; Schellhammer, Paul; Dai, Minghan; Morgan, Travis

    2015-04-01

    Inaccurate diagnoses of prostate cancer can result from transposition or contamination of patient biopsy specimens, which are known as specimen provenance complications. We assessed the clinical and economic burden of specimen provenance complications in prostate biopsies in the United States. We performed a comprehensive, systematic review of the literature to approximate the effect of specimen provenance complications on direct medical costs, patient QALYs and medicolegal costs. Data were extracted from published studies on specimen provenance complications rates, prostate cancer treatment efficacy, treatment cost, litigation/settlement costs after false diagnoses of prostate biopsies and patient quality of life. Sensitivity analysis was done to identify factors that most influenced the outcomes and assess the robustness of the findings. Of the estimated 806,251 primary and secondary prostate biopsies performed annually in the United States 20,322 specimen provenance complications were projected to result in 4,570 clinically meaningful false diagnoses and an expected loss of 634 QALYs. The total burden of specimen provenance complications was projected to exceed $879.9 million or $3,776 per positive cancer diagnosis. This estimate was most sensitive to the indemnity cost per false-positive case and the rate of transpositions at independent reference laboratories. The societal burden of specimen provenance complications in patients who undergo prostate biopsy exceeds $880 million annually in the United States. This analysis framework may be useful as policy makers, health organizations and researchers seek to decrease false diagnoses of prostate cancer and the consequent effects of delayed or unnecessary treatment. Further study is warranted to quantify the economic burden among additional diseases. Copyright © 2015 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

  14. Templates as a method for implementing data provenance in decision support systems.

    Science.gov (United States)

    Curcin, Vasa; Fairweather, Elliot; Danger, Roxana; Corrigan, Derek

    2017-01-01

    Decision support systems are used as a method of promoting consistent guideline-based diagnosis supporting clinical reasoning at point of care. However, despite the availability of numerous commercial products, the wider acceptance of these systems has been hampered by concerns about diagnostic performance and a perceived lack of transparency in the process of generating clinical recommendations. This resonates with the Learning Health System paradigm that promotes data-driven medicine relying on routine data capture and transformation, which also stresses the need for trust in an evidence-based system. Data provenance is a way of automatically capturing the trace of a research task and its resulting data, thereby facilitating trust and the principles of reproducible research. While computational domains have started to embrace this technology through provenance-enabled execution middlewares, traditionally non-computational disciplines, such as medical research, that do not rely on a single software platform, are still struggling with its adoption. In order to address these issues, we introduce provenance templates - abstract provenance fragments representing meaningful domain actions. Templates can be used to generate a model-driven service interface for domain software tools to routinely capture the provenance of their data and tasks. This paper specifies the requirements for a Decision Support tool based on the Learning Health System, introduces the theoretical model for provenance templates and demonstrates the resulting architecture. Our methods were tested and validated on the provenance infrastructure for a Diagnostic Decision Support System that was developed as part of the EU FP7 TRANSFoRm project. Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

  15. The Byzantine ceramics from Pergamon excavations. Characterization of local and imported productions by elementary analysis using PIXE and INAA methods and by petrography; Les ceramiques byzantines des fouilles de Pergame. Caracterisation des productions locales et importees par analyse elementaire par les methodes PIXE et INAA et par petrographie

    Energy Technology Data Exchange (ETDEWEB)

    Waksman, S.Y.

    1995-01-12

    An important ceramics material dated back to the 12th-14th centuries has been excavated in Pergamon (Turkey). Among these findings, wasters, tripod stilts and unfinished ware attest to local production in the Byzantine period. Elemental analysis by the methods PIXE (Particle Induced X-ray Emission) and INAA (Instrumental Neutron Activation Analysis) has been performed on a representative sampling of 160 sherds, including attested local material. Multivariate statistical techniques were used to classify the sherds into groups of similar composition and thus to distinguish ceramics made in Pergamon from imported wares. Several groups of local production have been constituted, which correspond to wares differing in date and fabric. The geochemical characterization of the pastes, complemented with petrographical and mineralogical data, shows that specific raw materials have been used to manufacture each ware. The analytical data related to ceramics made in Pergamon will serve as reference data for future provenance studies. Such reference groups of Byzantine ceramics are very rare, and therefore the ceramics imported into Pergamon cannot be attributed as to their origin. Among the ceramics widely diffused in the Byzantine world, some importations belonging to the ``fine sgraffito`` and ``Zeuxippus ware`` types have been identified. The latter type has been a source of stylistic influence for the workshops of Pergamon, since the analyses show that imitated ``Zeuxippus ware`` has been produced there. These imitations were probably themselves diffused on a regional scale. (author). 238 refs., 48 figs., 53 tabs., 22 photos., 8 appends.

  16. Can the provenance of the conflict minerals columbite and tantalite be ascertained by laser-induced breakdown spectroscopy?

    Science.gov (United States)

    Harmon, Russell S; Shughrue, Katrina M; Remus, Jeremiah J; Wise, Michael A; East, Lucille J; Hark, Richard R

    2011-07-01

    Conflict minerals is a term applied to ores mined in conditions of armed conflict and human rights abuse. Niobium and tantalum are two rare metals whose primary natural occurrence is in the complex oxide minerals columbite and tantalite, the ore of which is commonly referred to as coltan. The illicit export of coltan ore from the Democratic Republic of the Congo is thought to be responsible for financing the ongoing civil conflicts in this region. Determining the chemical composition of an ore is one of the means of ascertaining its provenance. Laser-induced breakdown spectroscopy (LIBS) offers a means of rapidly distinguishing different geographic sources for a mineral because the LIBS plasma emission spectrum provides the complete chemical composition (i.e., "chemical fingerprint") of any material in real time. To test this idea for columbite-tantalite, three sample sets were analyzed. Partial least squares discriminant analysis (PLSDA) allows correct sample-level geographic discrimination at a success rate exceeding 90%.

  17. Persistent identifiers for web service requests relying on a provenance ontology design pattern

    Science.gov (United States)

    Car, Nicholas; Wang, Jingbo; Wyborn, Lesley; Si, Wei

    2016-04-01

    Delivering provenance information for datasets produced from static inputs is relatively straightforward: we represent the processing actions and data flow using provenance ontologies and link to stored copies of the inputs stored in repositories. If appropriate detail is given, the provenance information can then describe what actions have occurred (transparency) and enable reproducibility. When web service-generated data is used by a process to create a dataset instead of a static inputs, we need to use sophisticated provenance representations of the web service request as we can no longer just link to data stored in a repository. A graph-based provenance representation, such as the W3C's PROV standard, can be used to model the web service request as a single conceptual dataset and also as a small workflow with a number of components within the same provenance report. This dual representation does more than just allow simplified or detailed views of a dataset's production to be used where appropriate. It also allow persistent identifiers to be assigned to instances of a web service requests, thus enabling one form of dynamic data citation, and for those identifiers to resolve to whatever level of detail implementers think appropriate in order for that web service request to be reproduced. In this presentation we detail our reasoning in representing web service requests as small workflows. In outline, this stems from the idea that web service requests are perdurant things and in order to most easily persist knowledge of them for provenance, we should represent them as a nexus of relationships between endurant things, such as datasets and knowledge of particular system types, as these endurant things are far easier to persist. We also describe the ontology design pattern that we use to represent workflows in general and how we apply it to different types of web service requests. We give examples of specific web service requests instances that were made by systems

  18. Analysis of Antarctic glacigenic sediment provenance through geochemical and petrologic applications

    Science.gov (United States)

    Licht, Kathy J.; Hemming, Sidney R.

    2017-05-01

    The number of provenance studies of glacigenic sediments in Antarctica has increased dramatically over the past decade, providing an enhanced understanding of ice sheet history and dynamics, along with the broader geologic history. Such data have been used to assess glacial erosion patterns at the catchment scale, flow path reconstructions over a wide range of scales, and ice sheet fluctuations indicated by iceberg rafted debris in circumantarctic glacial marine sediments. It is notable that even though most of the bedrock of the continent is ice covered and inaccessible, provenance data can provide such valuable information about Antarctic ice and can even be used to infer buried rock types along with their geo- and thermochronologic history. Glacigenic sediments provide a broader array of provenance analysis opportunities than any other sediment type because of their wide range of grain sizes, and in this paper we review methods and examples from all size fractions that have been applied to the Antarctic glacigenic sedimentary record. Interpretations of these records must take careful consideration of the choice of analytical methods, uneven patterns of erosion, and spatial variability in sediment transport and rock types, which all may lead to a preferential identification of different elements of sources in the provenance analyses. Because of this, we advocate a multi-proxy approach and highlight studies that demonstrate the value of selecting complementary provenance methods.

  19. Physiological response to drought stress in Camptotheca acuminata seedlings from two provenances

    Directory of Open Access Journals (Sweden)

    Yeqing eYing

    2015-05-01

    Full Text Available Drought stress is a key environmental factor limiting the growth and productivity of plants. The purpose of this study was to investigate the physiological responses of Camptotheca acuminata (C. acuminata to different drought stresses and compare the drought tolerance between the provenances Kunming (KM and Nanchang (NC, which are naturally distributed in different rainfall zones with annual rainfalls of 1000-1100 mm and 1600-1700 mm, respectively. We determined relative water content (RWC, chlorophyll content (Chl(a+b, net photosynthesis (Pn, gas exchange parameters, relative leakage conductivity (REC, malondialdehyde (MDA content and superoxide dismutase (SOD and peroxidase (POD activities of C. acuminata seedlings under both moderate (50% of maximum field capacity and severe drought stress (30% of maximum field capacity. As the degree of water stress increased, RWC, Chl(a+b content, Pn, stomatal conductance (Gs, transpiration rate (Tr and intercellular CO2 concentration (Ci values decreased, but water use efficiency (WUE, REC, MDA content and SOD and POD activities increased in provenances KM and NC. Under moderate and severe drought stress, provenance KM had higher RWC, Chl(a+b, Pn, WUE, SOD and POD and lower Gs, Tr, Ci and REC in leaves than provenance NC. The results indicated that provenance KM may maintain stronger drought tolerance via improvements in water-retention capacity, antioxidant enzyme activity and membrane integrity.

  20. Archaeological reconstruction of medieval lead production: Implications for ancient metal provenance studies and paleopollution tracing by Pb isotopes

    Energy Technology Data Exchange (ETDEWEB)

    Baron, Sandrine, E-mail: baron@lmtg.obs-mip.fr [Laboratoire des Travaux et Recherches Archeologiques sur les Cultures, les Espaces et les Societes, Universite Toulouse 2 Le Mirail, CNRS UMR 5608, Maison de la Recherche, 5 allee Antonio-Machado, 31 058 Toulouse Cedex 09 (France); Centre de Recherches Petrographiques et Geochimiques, Nancy Universite, CNRS UPR 2300, BP 20, 15 rue Notre Dame des Pauvres, 54 501 Vandoeuvre-les-Nancy (France); Le-Carlier, Cecile [Centre de Recherche en Archeologie, Archeosciences, Histoire, Universite Rennes 1, CNRS UMR 6566, Bat 24-25, Campus de Beaulieu 35042 Rennes, Cedex (France); Carignan, Jean; Ploquin, Alain [Centre de Recherches Petrographiques et Geochimiques, Nancy Universite, CNRS UPR 2300, BP 20, 15 rue Notre Dame des Pauvres, 54 501 Vandoeuvre-les-Nancy (France)

    2009-11-15

    The identification of metal provenance is often based on chemical and Pb isotope analyses of materials from the operating chain, mainly ores and metallic artefacts. Such analyses, however, have their limits. Some studies are unable to trace metallic artefacts or ingots to their ore sources, even in well-constrained archaeological contexts. Possible reasons for this difficulty are to be found among a variety of limiting factors: (i) problems of ore signatures, (ii) mixing of different ores (alloys), (iii) the use of additives during the metallurgical process, (iv) metal recycling and (v) possible Pb isotopic fractionation during metal production. This paper focuses on the issue of Pb isotope fractionation during smelting to address the issue of metal provenance. Through an experimental reconstruction of argentiferous Pb production in the medieval period, an attempt was made to better understand and interpret the Pb isotopic composition of ore smelting products. It is shown that the measured differences (outside the total external uncertainties of 0.005 (2*sd) for {sup 206}Pb/{sup 204}Pb ratios) in Pb signatures measured between ores, slag and smoke are not due to Pb mass fractionation processes, but to (1) ore heterogeneity ({Delta}{sup 206}Pb/{sup 204}Pb{sub slag-ores} = 0.066) and (2) the use of additives during the metallurgical process ({Delta}{sup 206}Pb/{sup 204}Pb{sub slag-ores} = 0.083). Even if these differences are due to causes (1) and/or (2), smoke from the ore reduction appears to reflect the ore mining area without a significant disturbance of its Pb signature for all the isotopic ratios ({Delta}{sup 206}Pb/{sup 204}Pb{sub smokes-ores} = 0.026). Thus, because the isotopic heterogeneity of the mining district and additives is averaged in slags, slag appears as the most relevant product to identify ancient metal provenance. Whereas aiming at identifying a given mine seems beyond the possibilities provided by the method, searching for the mining district

  1. Ion Beam Analysis for the provenance attribution of lapis lazuli used in glyptic art: The case of the “Collezione Medicea”

    Energy Technology Data Exchange (ETDEWEB)

    Re, Alessandro, E-mail: alessandro.re@unito.it [Dipartimento di Fisica, Università di Torino & INFN Sezione di Torino, Via Giuria 1, 10125 Torino (Italy); Angelici, Debora [Dipartimento di Fisica, Università di Torino & INFN Sezione di Torino, Via Giuria 1, 10125 Torino (Italy); Dipartimento di Scienze della Terra, Università di Torino, Via Valperga Caluso 35, 10125 Torino (Italy); Lo Giudice, Alessandro; Corsi, Jacopo; Allegretti, Silvia; Biondi, Alessia Fabiola; Gariani, Gianluca [Dipartimento di Fisica, Università di Torino & INFN Sezione di Torino, Via Giuria 1, 10125 Torino (Italy); Calusi, Silvia [Dipartimento di Fisica, Università di Firenze, Via Sansone 1, 50019 Sesto Fiorentino, Firenze (Italy); INFN Sezione di Firenze, Via Sansone 1, 50019 Sesto Fiorentino, Firenze (Italy); Gelli, Nicla [INFN Sezione di Firenze, Via Sansone 1, 50019 Sesto Fiorentino, Firenze (Italy); Giuntini, Lorenzo [Dipartimento di Fisica, Università di Firenze, Via Sansone 1, 50019 Sesto Fiorentino, Firenze (Italy); INFN Sezione di Firenze, Via Sansone 1, 50019 Sesto Fiorentino, Firenze (Italy); Massi, Mirko; Taccetti, Francesco [INFN Sezione di Firenze, Via Sansone 1, 50019 Sesto Fiorentino, Firenze (Italy); La Torre, Leonardo; Rigato, Valentino [INFN Laboratori Nazionali di Legnaro, Viale dell’Università 2, 35020 Legnaro, Padova (Italy); Pratesi, Giovanni [Museo di Storia Naturale, Università di Firenze, Via G. La Pira 4, 50121 Firenze (Italy)

    2015-04-01

    The first part of this study reports on the wide campaign for the extension of the database of both trace and minor elements concentration in diopside by means of μ-PIXE measurements and of luminescence spectra in diopside and wollastonite by means of μ-IL measurements. Diopside and wollastonite are actually two of the most common lapis lazuli-forming minerals. For this former part of the study, we analysed rocks of known provenance at the microbeam line of the LNL laboratories in Legnaro (PD) of the Istituto Nazionale di Fisica Nucleare (INFN). The latter part of the paper is dedicated to the non-invasive Ion Beam Analyses (IBA) characterisation of six pieces of the “Collezione Medicea”. The collection is exhibited at the Museum of Natural History (University of Firenze) and belonged to the Medici family. It includes artworks made of lapis lazuli manufactured in the 16{sup th} and 17{sup th} centuries but there is not precise information about the provenance of the used raw material. Results on the artworks show, as expected, that the Chilean provenance of the material used for the analysed artworks has to be excluded. Lapis lazuli used for five of the analysed artworks can be ascribed to the Afghan quarry district, while one object cannot be attributed only on the base of diopside and wollastonite analysis.

  2. Provenance analysis of the Voirons Flysch (Gurnigel nappe, Haute-Savoie, France): stratigraphic and palaeogeographic implications

    Science.gov (United States)

    Ragusa, Jérémy; Kindler, Pascal; Segvic, Branimir; Ospina-Ostios, Lina Maria

    2017-04-01

    The Chablais Prealps (Haute-Savoie, France) represent a well-preserved accretionary wedge of the Western Alpine Tethys. They comprise a stack of sedimentary nappes related to palaeogeographic realms ranging from the Ultrahelvetic to the Southern Penninic. The provenance analysis is based on the Gazzi-Dickinson method and on QEMSCAN® for heavy-minerals. The Quartzose petrofacies is the most important of the two sources, and supplied three of the four formations of the Voirons Flysch. It is similar to the sources that fed the other flyschs from the Gurnigel nappe. It is characterised by a mature, quartz-rich assemblage and a heavy-mineral population dominated by apatite and the zircon-tourmaline-rutile mineral group. These observations suggest a Clastic wedge provenance. The Feldspathic petrofacies is derived from a feldspar-rich source associated with metamorphic clasts and a heavy-mineral population dominated by garnet. This provenance characterises only one formation of the Voirons Flysch, and is related to the axial belt provenance. This provenance analysis shows that the Middle Eocene to Early Oligocene Voirons Flysch was fed by two sources, in contrast to the other flyschs of the Gurnigel nappe, and further suggests that this flysch was not deposited in the Piemont Ocean but in the Valais domain. Based on the results and comparative provenance analysis with the other flyschs of the Gurnigel nappe, we propose a generic feeding model which involves the Sesia-Dent Blanche nappe, the sedimentary nappes incorporated in the accretionary prism, and probably the Briançonnais basement.

  3. Clinically proven mtDNA mutations are not common in those with chronic fatigue syndrome.

    Science.gov (United States)

    Schoeman, Elizna M; Van Der Westhuizen, Francois H; Erasmus, Elardus; van Dyk, Etresia; Knowles, Charlotte V Y; Al-Ali, Shereen; Ng, Wan-Fai; Taylor, Robert W; Newton, Julia L; Elson, Joanna L

    2017-03-16

    Chronic Fatigue Syndrome (CFS) is a prevalent debilitating condition that affects approximately 250,000 people in the UK. There is growing interest in the role of mitochondrial function and mitochondrial DNA (mtDNA) variation in CFS. It is now known that fatigue is common and often severe in patients with mitochondrial disease irrespective of their age, gender or mtDNA genotype. More recently, it has been suggested that some CFS patients harbour clinically proven mtDNA mutations. MtDNA sequencing of 93 CFS patients from the United Kingdom (UK) and South Africa (RSA) was performed using an Ion Torrent Personal Genome Machine. The sequence data was examined for any evidence of clinically proven mutations, currently; more than 200 clinically proven mtDNA mutations point mutations have been identified. We report the complete mtDNA sequence of 93 CFS patients from the UK and RSA, without finding evidence of clinically proven mtDNA mutations. This finding demonstrates that clinically proven mtDNA mutations are not a common element in the aetiology of disease in CFS patients. That is patients having a clinically proven mtDNA mutation and subsequently being misdiagnosed with CFS are likely to be rare. The work supports the assertion that CFS should not be considered to fall within the spectrum of mtDNA disease. However, the current study cannot exclude a role for nuclear genes with a mitochondrial function, nor a role of mtDNA population variants in susceptibility to disease. This study highlights the need for more to be done to understand the pathophysiology of CFS.

  4. Genetic Variation of Growth and Disease Resistance Traits in Open-Pollinated Provenance-Progeny Trials of Falcataria moluccana Growing on Two Rust-Affected Sites at Age-18 Months

    Directory of Open Access Journals (Sweden)

    Liliana Baskorowati

    2017-04-01

    Full Text Available Two Falcataria moluccana (sengon progeny trials, incorporating 100 different families from 12 provenances growing on two highly gall rust (Uromycladium falcatarium prone sites were used to estimate genetic parameters and potentially identify rust-resistant material. Analysis was performed to assess provenance- and family-level survival, rust incidence, and growth at the two progeny trials. Height, diameter, survival, and rust incidence was measured at two progeny trials at 18 months-of-age located at Jember and Lumajang, East Java. Rust incidence at the two trial sites was severe, with only 39% overall survival (35% and 43% at Jember and Lumajang, repectively. The analysis revealed significant genetic variation at the provenance level for survival, rust incidence, and growth. No statistically meaningful narrow-sense heritability of these traits was indicated, though this is probably reflective of the inadequate within-family replication and effects associated with uneven stocking resulting from rust-induced mortality. Significant genotype-by environment (provenance-by-site interaction was also indicated, though the performance of some of the best- and worst-performing provenances was relatively stable, allowing recommendations of suitable provenances for further testing on rust-prone sites

  5. Provenance of pottery determined by soil physicochemical and chemometric methods: A case study from Frederiksgave, Ghana

    DEFF Research Database (Denmark)

    Rasmussen, Lars Holm; Bredwa-Mensah, Y.; Borggaard, Ole K.

    2009-01-01

    The suitability of using traditional soil chemical and mineralogical methods combined with chemometrics to trace provenance of archaeological samples was tested on potsherds from Frederiksgave, a former Danish plantation in southern Ghana, in use from 18301850. Soil and six potsherds from...... that the Frederiksgave pots were not locally produced but came from other production sites indicating trading interaction between the plantation and surrounding settlements. One sample undoubtedly originated from Dangme Shai and another one must have been produced at a third (unknown) site. The provenance...

  6. Automated metadata, provenance cataloging and navigable interfaces: Ensuring the usefulness of extreme-scale data

    Energy Technology Data Exchange (ETDEWEB)

    Schissel, D.P., E-mail: schissel@fusion.gat.com [General Atomics, P.O. Box 85608, San Diego, CA 92186-5608 (United States); Abla, G.; Flanagan, S.M. [General Atomics, P.O. Box 85608, San Diego, CA 92186-5608 (United States); Greenwald, M. [Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Lee, X. [General Atomics, P.O. Box 85608, San Diego, CA 92186-5608 (United States); Romosan, A.; Shoshani, A. [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Stillerman, J.; Wright, J. [Massachusetts Institute of Technology, Cambridge, MA 02139 (United States)

    2014-05-15

    For scientific research, it is not the mere existence of experimental or simulation data that is important, but the ability to make use of it. This paper presents the results of research to create a data model, infrastructure, and a set of tools that support data tracking, cataloging, and integration across a broad scientific domain. The system is intended to document workflow and data provenance in the widest sense. Combining research on integrated metadata, provenance, and ontology information with research on user interfaces has allowed the construction of early prototype. While using fusion science as a test bed, the system's framework and data model is quite general.

  7. Evaluation of aspect-oriented frameworks in Python for extending a project with provenance documentation features

    Directory of Open Access Journals (Sweden)

    2011-08-01

    Full Text Available In this paper we describe two sides of a real life use case of introducing an aspect-oriented framework into an industrial-grade project. This paper is divided into two parts: the selection process for an AOP framework in the Python programming language, and its use for modularized non-invasive recording of provenance data in a distributed data management tool. Criteria for the choice of such a framework are discussed and the background of provenance documentation is laid out.

  8. Association of serum testosterone with lipid abnormalities in patients with angiographically proven coronary artery disease

    Directory of Open Access Journals (Sweden)

    Chandima Madhu Wickramatilake

    2013-01-01

    Full Text Available Context: Low testosterone levels are associated with an atherogenic lipid profile and may contribute to the pathogenesis of atherosclerosis. Aims: Our study aimed to investigate the relationship between serum total testosterone (TT levels and lipid profile in angiographically confirmed coronary artery disease (CAD in men. Settings and Design: This is a case-control hospital-based study at Teaching Hospital, Karapitiya, Galle, Sri Lanka. Materials and Methods: Two hundred and six men, 103 with angiographically proven CAD and 103 healthy men as a control group were studied. The serum levels of TT and lipids were assessed. Statistical Analysis: Data were analyzed using Minitab software (version 15 for Windows. Results: The mean concentrations of lipid parameters of patients and controls were as follows: Serum total cholesterol (TCh, 5.9 ± 2.8 vs. 5.2 ± 1.6 mmol/l (P = 0.022, low-density lipoprotein cholesterol (LDL-Ch, 3.9 ± 1.2 vs. 3.1 ± 0.5 mmol/l (P = 0.001, high-density lipoprotein cholesterol (HDL-Ch, 1.1 ± 0.5 vs. 1.4 ± 0.6 mmol/l (P = 0.001, and TGs, 2.0 ± 1.0 vs. 1.5 ± 0.8 mmol/l (P = 0.001; lipid levels were significantly different between the two groups. The mean levels of TT in the patients and controls were 11.4 ± 2.7 vs. 18.1 ± 7.2 nmol/l (P = 0.001, significantly different. Among CAD patients, a significant positive association was found between testosterone and HDL-Ch (r = 0.623, P = 0.001, whereas a negative association was found with LDL-Ch (r = -0.579, P = 0.001. Conclusions: Low levels of TT in men with CAD that appear together with an atherogenic lipid milieu may be involved in the pathogenesis of CAD. The observed association between testosterone and HDL-Ch suggests a protective effect of the hormone.

  9. ESIP's Emerging Provenance and Context Content Standard Use Cases: Developing Examples and Models for Data Stewardship

    Science.gov (United States)

    Ramdeen, S.; Hills, D. J.

    2013-12-01

    Earth science data collections range from individual researchers' private collections to large-scale data warehouses, from computer-generated data to field or lab based observations. These collections require stewardship. Fundamentally, stewardship ensures long term preservation and the provision of access to the user community. In particular, stewardship includes capturing appropriate metadata and documentation--and thus the context of the data's creation and any changes they underwent over time --to enable data reuse. But scientists and science data managers must translate these ideas into practice. How does one balance the needs of current and (projected) future stakeholders? In 2011, the Data Stewardship Committee (DSC) of the Federation of Earth Science Information Partners (ESIP) began developing the Provenance and Context Content Standard (PCCS). As an emerging standard, PCCS provides a framework for 'what' must be captured or preserved as opposed to describing only 'how' it should be done. Originally based on the experiences of NASA and NOAA researchers within ESIP, the standard currently provides data managers with content items aligned to eight key categories. While the categories and content items are based on data life cycles of remote sensing missions, they can be generalized to cover a broader set of activities, for example, preservation of physical objects. These categories will include the information needed to ensure the long-term understandability and usability of earth science data products. In addition to the PCCS, the DSC is developing a series of use cases based on the perspectives of the data archiver, data user, and the data consumer that will connect theory and practice. These cases will act as specifications for developing PCCS-based systems. They will also provide for examination of the categories and content items covered in the PCCS to determine if any additions are needed to cover the various use cases, and also provide rationale and

  10. Towards a strontium isoscape for the determination of provenance of prehistoric wooden findings

    Science.gov (United States)

    Horsky, Monika; Tintner, Johannes; Bolka, Monika; Grabner, Michael; Kowarik, Kerstin; Reschreiter, Hans; Kern, Anton; Horacek, Micha; Prohaska, Thomas

    2014-05-01

    Prehistoric wood artefacts have been excavated from ancient salt mine galleries in Hallstatt, Austria. These findings present a unique archive of information on Bronze and Iron Age mining and trade relations, as for certain tools a production elsewhere and transport to the mine is assumed. These wooden artefacts contain the geochemical information of their growth location, though masked by secondary salts due to the storage conditions. Consequently, the analysis of the biogenic 87Sr/86Sr isotope ratios of the findings was carried out in comparison to the respective signatures of trees from possible regions of origin, in order to draw conclusions on prehistoric trade routes. Thus - in addition to Hallstatt - seven regions in the Alpine region of Austria as well as in the Northern and Southern lowlands were selected based on known settlements in the time period of interest. Within all regions, the geological bedrock variability was considered for the definition of sampling spots, which resulted in a total of 26 locations. Four tree species represented in the archaeological finds (i.e. Picea abies, Abies alba, Fagus sylvatica and Quercus sp.) were sampled upon availability. Wood sample digests from eight replicate trees per location were analysed using multicollector-inductively coupled plasma-mass spectrometry (MC-ICP-MS). In order to reveal the biogenic signatures of the prehistoric findings, a decontamination method based on acid leaching was developed. We could successfully separate biogenic from secondary Sr and adopted a mixing theory to account for possibly incomplete removal of the latter. The Sr isotope ratio data obtained from modern trees (i.e. bioavailable Sr) reflect the geological heterogeneity of the Alps, which challenges the creation of an isoscape and its applicability to distinct provenance determination. Different geologic bedrock types can be clearly distinguished by their 87Sr/86Sr, e.g. marine sedimentary and igneous rocks. Furthermore, the data

  11. Practice for dispersing pigments and other materials into water-based suspensions with a high intensity mixer

    CERN Document Server

    American Society for Testing and Materials. Philadelphia

    2002-01-01

    1.1 In preparing ceramic glazes and slurries for use, it is often necessary to add pigments to develop a desired fired color, to incorporate viscosity control agents for developing, or providing to develop the desired thickness of the glaze on the ware, to add materials which stabilize the suspension, control bacterial growth, and develop the desired hardness of the glaze on the ware to allow moving and handling before firing. While it is convenient to add these materials to the glaze or slurry in the dry form, it is often possible to use slurries where these materials are dispersed in a slurry and the slurry then added to the liquid glaze. Regardless of the state of the additions (dry or slurry), the dispersion can be done efficiently and effectively by the use of a high intensity mixer (sometimes referred to as a dissolver) and the procedure used is described here. 1.2 The values stated in SI units are to be regarded as the standard. This standard does not purport to address all of the safety concerns, if...

  12. Insight: Semantic Provenance and Analysis Platform for Multi-center Neurology Healthcare Research.

    Science.gov (United States)

    Ramesh, Priya; Wei, Annan; Welter, Elisabeth; Bamps, Yvan; Stoll, Shelley; Bukach, Ashley; Sajatovic, Martha; Sahoo, Satya S

    2015-11-01

    Insight is a Semantic Web technology-based platform to support large-scale secondary analysis of healthcare data for neurology clinical research. Insight features the novel use of: (1) provenance metadata, which describes the history or origin of patient data, in clinical research analysis, and (2) support for patient cohort queries across multiple institutions conducting research in epilepsy, which is the one of the most common neurological disorders affecting 50 million persons worldwide. Insight is being developed as a healthcare informatics infrastructure to support a national network of eight epilepsy research centers across the U.S. funded by the U.S. Centers for Disease Control and Prevention (CDC). This paper describes the use of the World Wide Web Consortium (W3C) PROV recommendation for provenance metadata that allows researchers to create patient cohorts based on the provenance of the research studies. In addition, the paper describes the use of descriptive logic-based OWL2 epilepsy ontology for cohort queries with "expansion of query expression" using ontology reasoning. Finally, the evaluation results for the data integration and query performance are described using data from three research studies with 180 epilepsy patients. The experiment results demonstrate that Insight is a scalable approach to use Semantic provenance metadata for context-based data analysis in healthcare informatics.

  13. Effects Of Drought Stress on Germination in Fourteen Provenances of Pinus Brutia Ten. Seeds in Turkey

    Directory of Open Access Journals (Sweden)

    Hakan Şevik

    2015-02-01

    Full Text Available Pinus brutia Ten., Red pine, known to be tough drought resistant pine specie, could effectively be used for afforestation of disturbed areas. It is of great interest for the afforestation in arid zones. Appropriate seed sources for the specific areas guarantees reforestation success. Away from its native areas Pinus brutia Ten. is planted for its ornamental value and timber production purposes. Selection of drought resistant provenances can very well increase the survival success. In this study, the effects of water potential on germination were studied in fourteen provenances of Pinus brutia Ten. from Turkey. Water potentials between 0 and -8 bars were obtained using polyethylene glycol 6000 (PEG-6000 solutions. Seeds were kept for 35 day at 20 ± 0.5°C. A decrease in water potential produced a marked reduction in germination percentage and germination value. As a result, significant variations between the provenances were found. It was determined that, under a -8 bar water stress, Isparta-Bucak and Mersin-Silifke, respectively corresponding to 58% and 57% of the control group, were the least water stress affected provenances.

  14. Can Judgment be Developed: A Cast Study of Three Proven Leaders

    Science.gov (United States)

    2006-06-16

    leadership development of these three proven leaders were assessed against known judgment development theories . Finally, this thesis addresses the...Judgment, Development, Leadership , Decision-Making, Intuition, Education, Patton, Eisenhower, Bradley 16. SECURITY CLASSIFICATION OF: 17. LIMITATION...14 Judgment Development Theories

  15. Success in the University Admission Process in Germany: Regional Provenance Matters

    Science.gov (United States)

    Braun, Sebastian; Dwenger, Nadja

    2009-01-01

    School education in Germany is under the responsibility of the federal states and as a consequence average grades differ widely across regions. Since school leavers apply nationwide for admission to university, regional provenance may thus matter a lot for the success probability in the admission process. Using a comprehensive dataset of the…

  16. A history-tracing XML-based provenance framework for workflows

    NARCIS (Netherlands)

    Gerhards, M; Belloum, A.; Berretz, F.; Sander, V.; Skorupa, S.

    2010-01-01

    The importance of validating and reproducing the outcome of computational processes is fundamental to many application domains. Assuring the provenance of workflows will likely become even more important with respect to the incorporation of human tasks to standard workflows by emerging standards

  17. Scab susceptibility of a provenance collection of pecan in three different seasons in the Southeastern USA

    Science.gov (United States)

    Pecan scab (caused by Fusicladium effusum) is the most economically destructive disease of pecan in the Southeast US. Wet, humid conditions typical of the Southeast are known to provide conditions conducive to epidemics. A provenance collection of pecan from 19 locations representing the native rang...

  18. Scab susceptibility of a provenance collection of pecan in in the southeastern USA

    Science.gov (United States)

    Pecan scab is the most economically destructive disease of pecan in the Southeast US. It is spread in rain and is widespread in the Southeast where conditions conducive to epidemics. A provenance collection of pecan from 19 locations representing the native range of the tree is located in Byron, Geo...

  19. Variation in performance of beech saplings of 7 European provenances under shade and full light conditions

    NARCIS (Netherlands)

    Kramer, K.; Hees, van A.F.M.; Jans, W.W.P.

    2001-01-01

    The use of beech seedlings from South-East European and North-West (NW) provenances for underplanting in coniferous forests in North-West Europe was investigated by means of experimental shading. The effects of this treatment on survival, morphology, phenology, physiology and growth were analysed by

  20. Geochemical Identification in Sediment Provenance during Glacial/Interglacial Period: the Southern Drake Passage

    Science.gov (United States)

    Park, Y. K.; Jung, J.; Lee, J. I.; Yoo, K. C.; Kim, J. W.

    2016-12-01

    Clay mineralogy and crystal size distribution in marine sediment is used for the indication of a sediment provenance and climatic changes. Objective of this study is to trace the sediment provenances in the Southern Drake Passage with clay mineralogy, elemental composition and crystal size distributions (CSDs) of clay mineral. In the present study, X-Ray Diffractometer (XRD) measurements showed that smectite, illite and chlorite are dominant phases. The semi-quantitative analysis showed that the relatively proportion of smectite is 50 - 60% in interglacial stage, 30 - 39% in glacial stage. Comparing with REE data, sediments supply was influenced by Weddell sea current and Antarctic Circumpolar Current (ACC). Moreover, elemental composition and microscopic analysis of smectites were carried by Transmission Electron Microscopy (TEM) and energy dispersive spectroscopy (EDS). The composition of smectite clay minerals were plotted on the tertiary diagram indicating that Smectite in Drake Passage was transported from three provenances: South Shetland island, east and west side of Antarctic peninsula during glacial - interglacial period. The CSDs of smectite also indicate the various source of smectite. The variation in the values of α (mean thickness) and β2 (shape or uniformity of the distribution) of smectite grain size will be discussed in terms of the sediment provenance.

  1. Assessment of biopsy-proven liver fibrosis by 2D-shear wave elastography

    DEFF Research Database (Denmark)

    Herrmann, Eva; de Lédinghen, Victor; Cassinotto, Christophe

    2017-01-01

    BACKGROUND AND AIMS: 2D shear wave elastography (2D-SWE) has proven to be efficient for the evaluation of liver fibrosis in small to moderate size clinical trials. We aimed at running a larger scale meta-analysis of individual data. METHODS: Centers which have worked with Aixplorer ultrasound equ...

  2. Provenance and temporal variability of ice rafted debris in the Indian ...

    Indian Academy of Sciences (India)

    Ice rafted debris (IRD) records were studied in two sediment cores (SK200/22a and SK200/27) from the sub-Antarctic and Polar frontal regime of the Indian sector of Southern Ocean for their distribution and provenance during the last 22,000 years. The IRD fraction consists of quartz and lithic grains, with the lithic grains ...

  3. Quantifying sediment provenance using multiple composite fingerprints in a small watershed in Oklahoma

    Science.gov (United States)

    Quantitative information on sediment provenance is badly needed for calibration and validation of process-based soil erosion models. However, sediment source data are rather limited due to difficulties in direct measurement of various source contributions at a watershed scale. The objectives are t...

  4. Protru: Leveraging Provenance to Enhance Network Trust in a Wireless Sensor Network

    Science.gov (United States)

    Dogan, Gulustan

    2013-01-01

    Trust can be an important component of wireless sensor networks for believability of the produced data and historical value is a crucial asset in deciding trust of the data. A node's trust can change over time after its initial deployment due to various reasons such as energy loss, environmental conditions or exhausting sources. Provenance can…

  5. Influence de la provenance du géniteur et du type de pollen sur la ...

    African Journals Online (AJOL)

    Influence de la provenance du géniteur et du type de pollen sur la fructification sous pollinisation contrôlée chez Dacryodes edulis (Burseraceae) au Cameroun. JT Makueti, Z Tchoundjeu, A Kalinganire, BA Nkongmeneck, E Asaah, A Tsobeng, A Kouodiekong ...

  6. Sodium chloride damage to porous building materials

    NARCIS (Netherlands)

    Lubelli, B.A.

    2006-01-01

    This research studied sodium chloride (NaCl) damage to porous building materials with the aim of: i) gaining a better understanding of the damage process and ii) developing an effective crystallization test. It has been definitely proven that NaCl modifies the hygric dilation of a material

  7. Late Quaternary loess-like paleosols and pedocomplexes, geochemistry, provenance and source area weathering, Manasbal, Kashmir Valley, India

    Science.gov (United States)

    Babeesh, C.; Achyuthan, Hema; Jaiswal, Manoj Kumar; Lone, Aasif

    2017-05-01

    The late Quaternary loess and loess-like deposits in Kashmir Valley are natural archives that have preserved paleoclimate and paleoenvironmental records of the region. We present a loess-like paleosol located along the margin of the Manasbal Lake, Ganderbal, which was studied in detail for understanding the pedological processes and reconstructing the late Quaternary soil formation. In this paper we present loess-like paleosol formation of a nearly 10.6 m thick sequence exposed along the margin of Manasbal Lake, Ganderbal District, Srinagar, Kashmir. Geochemical and textural data of this loess-like sedimentary sequence fluctuate reflecting the varied depositional processes operating in the valley, differential intensity of weathering, and processes of pedogenesis. Weathering indices such as chemical index of alteration, chemical index of weathering, and plagioclase index of alteration reveal weak to moderate weathering of the parent material. Provenance discrimination diagrams of the present study disclose that the Manasbal loess-like paleosol sediments are derived from the mixed source rocks suggesting a variety of provenance with variable geological settings, which apparently have undergone weak to moderate recycling processes. The Manasbal paleosol horizons have been dated by the optically stimulated luminescence (OSL) method to the marine isotope stages mid-MIS-3 (41.7 ± 8.0 ka) and late-MIS-2 (14.6 ± 3.8 ka). During the MIS-3 period, the climate was wetter, forming a strong AhBtk paleosol as inferred from the geochemical data. A steady increase in the CaCO3 content and C/N ratio in the paleosols from 6.50 m (MIS-3) indicates arid and drier climatic conditions. The area around Manasbal Lake incised because of climate change and neotectonic activity since post-14 ka.

  8. Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository

    Directory of Open Access Journals (Sweden)

    Paolo Missier

    2012-03-01

    Full Text Available Experimental science can be thought of as the exploration of a large research space, in search of a few valuable results. While it is this “Golden Data” that gets published, the history of the exploration is often as valuable to the scientists as some of its outcomes. We envision an e-research infrastructure that is capable of systematically and automatically recording such history – an assumption that holds today for a number of workflow management systems routinely used in e-science. In keeping with our gold rush metaphor, the provenance of a valuable result is a “Golden Trail”. Logically, this represents a detailed account of how the Golden Data was arrived at, and technically it is a sub-graph in the much larger graph of provenance traces that collectively tell the story of the entire research (or of some of it.In this paper we describe a model and architecture for a repository dedicated to storing provenance traces and selectively retrieving Golden Trails from it. As traces from multiple experiments over long periods of time are accommodated, the trails may be sub-graphs of one trace, or they may be the logical representation of a virtual experiment obtained by joining together traces that share common data.The project has been carried out within the Provenance Working Group of the Data Observation Network for Earth (DataONE NSF project. Ultimately, our longer-term plan is to integrate the provenance repository into the data preservation architecture currently being developed by DataONE.

  9. Biometric characters of seeds and wings as markers of geographical differentiation between European scots pine (Pinus sylvestris L. provenances

    Directory of Open Access Journals (Sweden)

    Lech Urbaniak

    2014-01-01

    Full Text Available Biometric characters of seeds and wings served to describe interprovenance differentiation of Scots pine in Europe. Grouping analysis was applied, Mahalanobis distances were calculated as well as Hotellings T2 statistics were applied. The similarity of East European and Finnish provenances was conspicuous. The provenance from Scotland proved to be similar to provenances originating from the region of Scandinavia. On the other hand, two southern provenances 54(Rychtal, Poland and 55(Luboml, Ukraine, were also found similar to provenances originating from the region of Scandinavia (western Norway. The obtained pattern of reciprocal relations may indicate pathways of Scots pine migration in the postglacial period or may be a result of adaptation to certain similar environmental conditions. No relations were detected between size of seeds and geographic origin of provenances.

  10. Magnetic properties of sediments in cores from the Mandovi estuary, western India: Inferences on provenance and pollution.

    Science.gov (United States)

    Prajith, A; Rao, V Purnachandra; Kessarkar, Pratima M

    2015-10-15

    Magnetic properties of sediments were investigated in 7 gravity cores recovered along a transect of the Mandovi estuary, western India to understand their provenance and pollution. The maximum magnetic susceptibility of sediments was at least 6 times higher in the upper/middle estuary than in lower estuary/bay. The χfd% and χARM/SIRM of sediments indicated coarse, multi-domain and pseudo-single domain magnetic grains, resembling ore material in the upper/middle estuary and coarse stable single domain (SSD) to fine SSD grains in the lower estuary/bay. Mineralogy parameters indicated hematite and goethite-dominated sediments in the upper/middle estuary and magnetite-dominated sediments in the lower estuary/bay. Two sediment types were discernible because of deposition of abundant ore material in the upper/middle estuary and detrital sediment in the lower estuary/bay. The enrichment factor and Index of geo-accumulation of metals indicated significant to strong pollution with respect to Fe and Mn in sediments from the upper/middle estuary. Copyright © 2015 Elsevier Ltd. All rights reserved.

  11. Source to sink zircon grain shape: Constraints on selective preservation and significance for Western Australian Proterozoic basin provenance

    Directory of Open Access Journals (Sweden)

    V. Markwitz

    2018-03-01

    Calculations of the proportions of source material in sedimentary rocks relative to the proportions of source material in the overall catchment area (erosion parameter ‘K’ calculated based on age spectra produced values typical for mature river systems, with K = 6 for the Yilgarn-Capricorn and K = 5.5 for the Musgrave-Amadeus source-sink system. For the Yilgarn-Capricorn system, we also calculated ‘K’ based on Minor Axis, to determine whether grain width can be linked to age populations. Results of the shape-based K of 5.3 suggest a similarity between age-based and shape-based ‘K’ values, demonstrating that zircon grain width may be a useful discriminator of provenance. Contrary to commonly applied qualitative shape classifications, we found no consistent correlations between shape descriptors of magmatic zircons and the composition of their host rock. While metamict zircons were preferentially removed during transport, the similarities in grain shape and age distribution of magmatic and detrital populations suggest that hydraulic sorting did not have a significant effect. We conclude that transport of zircon grains from magmatic source to sedimentary sink affects their width less than their length.

  12. Polyacylurethanes as Novel Degradable Cell Carrier Materials for Tissue Engineering

    NARCIS (Netherlands)

    Jovanovic, Danijela; Roukes, Frans V.; Loeber, Andrea; Engels, Gerwin E.; van Oeveren, Willem; van Seijen, Xavier J. Gallego; van Luyn, Marja J. A.; Harmsen, Martin C.; Schouten, Arend Jan

    2011-01-01

    Polycaprolactone (PCL) polyester and segmented aliphatic polyester urethanes based on PCL soft segment have been thoroughly investigated as biodegradable scaffolds for tissue engineering. Although proven beneficial as long term implants, these materials degrade very slowly and are therefore not

  13. Performance of 19-year-old provenances of Liquidambar styraciflua in Paraguaçu Paulista, São Paulo

    OpenAIRE

    Alexandre Magno Sebbenn; Flavio Arantes; Osmar Vilas Boas; Miguel Luiz Menezes Freitas

    2007-01-01

    The genetic variation in the growth of seven 19-year-old Liquidambar styraciflua provenances was studied in Paraguaçu Paulista, São Paulo State, Brazil. The trial was established in a complete randomized block design with seven provenances, four replications and twelve-tree square plots. Significant differences among provenances were detected for diameter at breast height, height and volume, indicating the possibility of increasing timber yield through selection of the most productive provena...

  14. Morphological and oil content variation in seeds of Azadirachta indica A. Juss. (Neem) from northern and western provenances of India.

    Science.gov (United States)

    Kaura, S K; Gupta, S K; Chowdhury, J B

    1998-01-01

    Seed morphology (seed length and 20 seed weight) and oil content was studied in Azadirachta indica A. Juss. (Neem) of five provenances of northern and western India. Trees with wide ranges of girths were considered for study. Maximum average oil content was observed in trees from Hisar provenance. Seed oil content in most of the provenances was not consistently and significantly correlated with morphological parameters of seeds. Age of the tree had no significant effect on the oil yield.

  15. Drilled teeth and shell artefacts from a grave at Prague-Březiněves and a review of decorative artefacts made from animal material from Corded Ware culture in the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Kyselý, René; Dobeš, Miroslav; Svoboda, K.

    -, - (2017) ISSN 1866-9557 R&D Projects: GA ČR(CZ) GA16-14855S Institutional support: RVO:67985912 Keywords : tooth pendants * shell beads * solar disc * dog (Canis familiaris) * Margaritifera auricularia * Chalcolithic (Copper Age) * Bohemia * Moravia Subject RIV: AC - Archeology, Anthropology, Ethnology Impact factor: 1.844, year: 2016

  16. Comparison of Mechanical Circulatory Support by the Use of Pulsatile Left Ventricular Assist Devices Polvad MEV and Continuous Flow Heart Ware and Heart Mate II in a Single-Center Experience.

    Science.gov (United States)

    Nadziakiewicz, P; Pacholewicz, J; Zakliczynski, M; Niklewski, T; Borkowski, J; Hrapkowicz, T; Zembala, M

    2016-06-01

    Mechanical circulatory support is increasingly used in patients with heart failure as a bridge to transplant or recovery. Results of use the Polish POLVAD MEV pulsatile circulatory support system and its comparison with novel devices never was done. We compared the course of patients with left ventricular circulatory support (left ventricular assist device [LVAD]) supported by POLVAD MEV or continuous flow devices Heart Mate II (HM II) and Heart Ware (HW) in single-center cohort. We retrospectively reviewed 44 patients who underwent Polvad Mev (group P; n = 24 [21M/3F]) or HW or HM II (group C; n = 20 [20M/0F]) implantation between April 2007 and February 2014. Patients were in INTERMACS 1 (6 in group P and 1 in group C) or 2. Preimplant demographics, and perioperative and postoperative clinical outcomes were reviewed between groups. We analyzed baseline signs of heart failure, comorbidities, complications, and the 30- and 90-day results. Among the groups, age, gender, weight, and cause of heart failure were comparable. Patients in group C suffered more frequently from hypercholesterolemia preoperatively. Patients in group P had more pulmonary complications (7 vs 0) after LVAD implantation and stay longer on intensive care unit than patients in group C (17.61 ± 16.96 vs 9.56 ± 9.42; P = .047). After exclusion, INTERMACS 1 patients it was not significant (14.8 ± 10.8 vs 9.8 ± 9.6 days; P = .065), the 30- and 90-day mortality was comparable. Implantation of pulsatile POLVAD MEV and continuous flow devices as LVAD support provides comparable results. A greater number of complications in group P can cause increased mortality over a longer observation period. Copyright © 2016 Elsevier Inc. All rights reserved.

  17. Provenance, life span, and phylogeny do not affect grass species' responses to nitrogen and phosphorus.

    Science.gov (United States)

    Seabloom, Eric W; Benfield, Cara D; Borer, Elizabeth T; Stanley, Amanda G; Kaye, Thomas N; Dunwiddie, Peter W

    2011-09-01

    Successful conservation management requires an understanding of how species respond to intervention. Native and exotic species may respond differently to management interventions due to differences arising directly from their origin (i.e., provenance) or indirectly due to biased representations of different life history types (e.g., annual vs. perennial life span) or phylogenetic lineages among provenance (i.e., native or exotic origin) groups. Thus, selection of a successful management regime requires knowledge of the life history and provenance-bias in the local flora and an understanding of the interplay between species characteristics across existing environmental gradients in the landscape. Here we tested whether provenance, phylogeny, and life span interact to determine species distributions along natural gradients of soil chemistry (e.g., soil nitrogen and phosphorus) in 10 upland prairie sites along a 600-km latitudinal transect running from southern Vancouver Island in British Columbia, Canada, to the Willamette Valley in Oregon, USA. We found that soil nitrate, phosphorus, and pH exerted strong control over community composition. However, species distributions along environmental gradients were unrelated to provenance, life span, or phylogenetic groupings. We then used a greenhouse experiment to more precisely measure the response of common grass species to nitrogen and phosphorus supply. As with the field data, species responses to nutrient additions did not vary as a function of provenance, life span, or phylogeny. Native and exotic species differed strongly in the relationship between greenhouse-measured tolerance of low nutrients and field abundance. Native species with the greatest ability to maintain biomass production at low nutrient supply rates were most abundant in field surveys, as predicted by resource competition theory. In contrast, there was no relationship between exotic-species biomass at low nutrient levels and field abundance. The

  18. Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program

    Science.gov (United States)

    Ma, X.; Zheng, J. G.; Goldstein, J.; Duggan, B.; Xu, J.; Du, C.; Akkiraju, A.; Aulenbach, S.; Tilmes, C.; Fox, P. A.

    2013-12-01

    The periodical National Climate Assessment (NCA) of the US Global Change Research Program (USGCRP) [1] produces reports about findings of global climate change and the impacts of climate change on the United States. Those findings are of great public and academic concerns and are used in policy and management decisions, which make the provenance information of findings in those reports especially important. The USGCRP is developing a Global Change Information System (GCIS), in which the NCA reports and associated provenance information are the primary records. We were modeling and developing Semantic Web applications for the GCIS. By applying a use case-driven iterative methodology [2], we developed an ontology [3] to represent the content structure of a report and the associated provenance information. We also mapped the classes and properties in our ontology into the W3C PROV-O ontology [4] to realize the formal presentation of provenance. We successfully implemented the ontology in several pilot systems for a recent National Climate Assessment report (i.e., the NCA3). They provide users the functionalities to browse and search provenance information with topics of interest. Provenance information of the NCA3 has been made structured and interoperable by applying the developed ontology. Besides the pilot systems we developed, other tools and services are also able to interact with the data in the context of the 'Web of data' and thus create added values. Our research shows that the use case-driven iterative method bridges the gap between Semantic Web researchers and earth and environmental scientists and is able to be deployed rapidly for developing Semantic Web applications. Our work also provides first-hand experience for re-using the W3C PROV-O ontology in the field of earth and environmental sciences, as the PROV-O ontology is recently ratified (on 04/30/2013) by the W3C as a recommendation and relevant applications are still rare. [1] http

  19. Variability in growth of Vachellia nilotica provenances tested in the Sudano-Sahelian zone of Niger

    DEFF Research Database (Denmark)

    Larwanou, Mahamane; Issa, Rabiou; Saadou, Mahamane

    2014-01-01

    A provenance trial of Vachellia nilotica (Acacia nilotica) was conducted in Niger in order to assess variability in growth among 10 provenances from Africa (subsp. adstringens from Niger, Senegal and Cameroun) and outside the continent (subsp. indica from Pakistan and Yemen). Tree height, diameter...... and Pakistan. Within the African provenances, origins from Niger and Senegal were performing better than the provenance from Cameroun. There were indications that the performance could be correlated to precipitation at origin, but since the correlation was driven by the poor performance of subsp. indica...

  20. Rapid elemental analysis and provenance study of Blumea balsamifera DC using laser-induced breakdown spectroscopy.

    Science.gov (United States)

    Liu, Xiaona; Zhang, Qiao; Wu, Zhisheng; Shi, Xinyuan; Zhao, Na; Qiao, Yanjiang

    2014-12-31

    Laser-induced breakdown spectroscopy (LIBS) was applied to perform a rapid elemental analysis and provenance study of Blumea balsamifera DC. Principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA) were implemented to exploit the multivariate nature of the LIBS data. Scores and loadings of computed principal components visually illustrated the differing spectral data. The PLS-DA algorithm showed good classification performance. The PLS-DA model using complete spectra as input variables had similar discrimination performance to using selected spectral lines as input variables. The down-selection of spectral lines was specifically focused on the major elements of B. balsamifera samples. Results indicated that LIBS could be used to rapidly analyze elements and to perform provenance study of B. balsamifera.

  1. Provenance establishment of coffee using solution ICP-MS and ICP-AES.

    Science.gov (United States)

    Valentin, Jenna L; Watling, R John

    2013-11-01

    Statistical interpretation of the concentrations of 59 elements, determined using solution based inductively coupled plasma mass spectrometry (ICP-MS) and inductively coupled plasma emission spectroscopy (ICP-AES), was used to establish the provenance of coffee samples from 15 countries across five continents. Data confirmed that the harvest year, degree of ripeness and whether the coffees were green or roasted had little effect on the elemental composition of the coffees. The application of linear discriminant analysis and principal component analysis of the elemental concentrations permitted up to 96.9% correct classification of the coffee samples according to their continent of origin. When samples from each continent were considered separately, up to 100% correct classification of coffee samples into their countries, and plantations of origin was achieved. This research demonstrates the potential of using elemental composition, in combination with statistical classification methods, for accurate provenance establishment of coffee. Copyright © 2013 Elsevier Ltd. All rights reserved.

  2. Rapid evolution and range expansion of an invasive plant are driven by provenance-environment interactions.

    Science.gov (United States)

    Zenni, Rafael D; Bailey, Joseph K; Simberloff, Daniel

    2014-06-01

    To improve our ability to prevent and manage biological invasions, we must understand their ecological and evolutionary drivers. We are often able to explain invasions after they happen, but our predictive ability is limited. Here, we show that range expansions of introduced Pinus taeda result from an interaction between genetic provenance and climate and that temperature and precipitation clines predict the invasive performance of particular provenances. Furthermore, we show that genotypes can occupy climate niche spaces different from those observed in their native ranges and, at least in our case, that admixture is not a main driver of invasion. Genotypes respond to climate in distinct ways, and these interactions affect the ability of populations to expand their ranges. While rapid evolution in introduced ranges is a mechanism at later stages of the invasion process, the introduction of adapted genotypes is a key driver of naturalisation of populations of introduced species. © 2014 John Wiley & Sons Ltd/CNRS.

  3. BioQ: tracing experimental origins in public genomic databases using a novel data provenance model.

    Science.gov (United States)

    Saccone, Scott F; Quan, Jiaxi; Jones, Peter L

    2012-04-15

    Public genomic databases, which are often used to guide genetic studies of human disease, are now being applied to genomic medicine through in silico integrative genomics. These databases, however, often lack tools for systematically determining the experimental origins of the data. We introduce a new data provenance model that we have implemented in a public web application, BioQ, for assessing the reliability of the data by systematically tracing its experimental origins to the original subjects and biologics. BioQ allows investigators to both visualize data provenance as well as explore individual elements of experimental process flow using precise tools for detailed data exploration and documentation. It includes a number of human genetic variation databases such as the HapMap and 1000 Genomes projects. BioQ is freely available to the public at http://bioq.saclab.net.

  4. Rapid Elemental Analysis and Provenance Study of Blumea balsamifera DC Using Laser-Induced Breakdown Spectroscopy

    Directory of Open Access Journals (Sweden)

    Xiaona Liu

    2014-12-01

    Full Text Available Laser-induced breakdown spectroscopy (LIBS was applied to perform a rapid elemental analysis and provenance study of Blumea balsamifera DC. Principal component analysis (PCA and partial least squares discriminant analysis (PLS-DA were implemented to exploit the multivariate nature of the LIBS data. Scores and loadings of computed principal components visually illustrated the differing spectral data. The PLS-DA algorithm showed good classification performance. The PLS-DA model using complete spectra as input variables had similar discrimination performance to using selected spectral lines as input variables. The down-selection of spectral lines was specifically focused on the major elements of B. balsamifera samples. Results indicated that LIBS could be used to rapidly analyze elements and to perform provenance study of B. balsamifera.

  5. Visualisation methods for large provenance collections in data-intensive collaborative platforms

    Science.gov (United States)

    Spinuso, Alessandro; Fligueira, Rosa; Atkinson, Malcolm; Gemuend, Andre

    2016-04-01

    This work investigates improving the methods of visually representing provenance information in the context of modern data-driven scientific research. It explores scenarios where data-intensive workflows systems are serving communities of researchers within collaborative environments, supporting the sharing of data and methods, and offering a variety of computation facilities, including HPC, HTC and Cloud. It focuses on the exploration of big-data visualization techniques aiming at producing comprehensive and interactive views on top of large and heterogeneous provenance data. The same approach is applicable to control-flow and data-flow workflows or to combinations of the two. This flexibility is achieved using the W3C-PROV recommendation as a reference model, especially its workflow oriented profiles such as D-PROV (Messier et al. 2013). Our implementation is based on the provenance records produced by the dispel4py data-intensive processing library (Filgueira et al. 2015). dispel4py is an open-source Python framework for describing abstract stream-based workflows for distributed data-intensive applications, developed during the VERCE project. dispel4py enables scientists to develop their scientific methods and applications on their laptop and then run them at scale on a wide range of e-Infrastructures (Cloud, Cluster, etc.) without making changes. Users can therefore focus on designing their workflows at an abstract level, describing actions, input and output streams, and how they are connected. The dispel4py system then maps these descriptions to the enactment platforms, such as MPI, Storm, multiprocessing. It provides a mechanism which allows users to determine the provenance information to be collected and to analyze it at runtime. For this work we consider alternative visualisation methods for provenance data, from infinite lists and localised interactive graphs, to radial-views. The latter technique has been positively explored in many fields, from text

  6. Solid state NMR and IR characterization of wood polymer structure in relation to tree provenance.

    Science.gov (United States)

    Santoni, Ilaria; Callone, Emanuela; Sandak, Anna; Sandak, Jakub; Dirè, Sandra

    2015-03-06

    (13)C nuclear magnetic resonance and mid-infrared spectroscopies were used for characterizing changes in the chemical structure of wood polymers (cellulose, hemicellulose and lignin) in relation to the tree growth location. Samples of three provenances in Europe (Finland, Poland and Italy) were selected for studies. The requirement was to use untreated solid wood samples to minimize any manipulation to the nanostructure of native wood. The results confirm that the chemical and physical properties of samples belonging to the same wood species (Picea abies Karst.) differ due to the origin. Both FT-IR and dynamic NMR spectroscopies were able to correctly discriminate samples originating from three different provenances in Europe. Such methods might be very useful for both, research and understanding of wood microstructure and its variability due to the growth conditions. Copyright © 2014 Elsevier Ltd. All rights reserved.

  7. Wood constructions. Energy eficient, sustainable, practically proven; Holzbau Konstruktionen. Energieeffizient, nachhaltig, praxisgerecht

    Energy Technology Data Exchange (ETDEWEB)

    Lueckmann, Rudolf

    2012-07-01

    The book 'Wood constructions' provides standardized and practically proven designs, all necessary information on building physics, fire protection and additional specialized knowledge for energy efficient renovations and construction details in wood construction. The main topics of this book are: Fundamentals, timber-frame structures, wood preservation, thermal insulation, sound insulation, fire protection, energy-efficient timber buildings, timber construction systems, rehabilitation of timber structures, relevant regulations and standards.

  8. Epr of Mn2+ Impurities in Calcite: A Detailed Study Pertinent to Marble Provenance Determination

    DEFF Research Database (Denmark)

    Weihe, H.; Piligkos, S.; Barra, A.L.

    2009-01-01

    We demonstrate that the electron paramagnetic resonance spectrum of Mn2+ impurities in calcite, and therefore also in marble, may be accurately reproduced by a traditional spin Hamiltonian formalism. The success of such a treatment, however, very much depends on the spin Hamiltonian parameters...... having the correct signs as well as magnitudes. We present data that determine the sign of the axial anisotropy parameter and thereby facilitate future quantum mechanical characterizations of marble electron paramagnetic resonance spectra that supplement provenance determination...

  9. EPR OF Mn2+ IMPURITIES IN CALCITE: A DETAILED STUDY PERTINENT TO MARBLE PROVENANCE DETERMINATION

    DEFF Research Database (Denmark)

    Weihe, H.; Piligkos, S.; Barra, A.L.

    2009-01-01

    We demonstrate that the electron paramagnetic resonance spectrum of Mn2+ impurities in calcite, and therefore also in marble, may be accurately reproduced by a traditional spin Hamiltonian formalism. The success of such a treatment, however, very much depends on the spin Hamiltonian parameters...... having the correct signs as well as magnitudes. We present data that determine the sign of the axial anisotropy parameter and thereby facilitate future quantum mechanical characterizations of marble electron paramagnetic resonance spectra that supplement provenance determination....

  10. “Team Building: Proven Strategies for Improving Team Performance, 4th Edition”

    OpenAIRE

    Greg Homan; Jason Hedrick

    2008-01-01

    Team Building is an important issue for Youth Development professionals. We utilize team-focused work to achieve our objectives in educating youth. The team building skills we integrate into programming serve to prepare youth for the dynamic, highly interpersonal work environment of today. “Team Building: Proven Strategies for Improving Team Performance, 4th Edition,” by W. Dyer, W.G. Dyer, and J. Dyer (2007), provides a practical theoretical framework for those interested in team building ap...

  11. Sandstone Provenance of the De Geerdalen Formation, Svalbard - Emphasis on Petrography and Chromium Spinel Compositions

    OpenAIRE

    Harstad, Trond Svånå

    2016-01-01

    Detrital chromium spinel mineral-chemical analyses, in combination with sandstone petrography, were conducted on samples from the Upper Triassic De Geerdalen Formation from several locations on Svalbard, in order to interpret sandstone provenance. Petrographic identification of detrital minerals and lithic fragments was used to identify source rock lithology. The accessory mineral chromium spinel was used as a petrogenetic marker to distinguish tectonic setting of mafic and ultra- mafic sourc...

  12. Towards a logic-based method to infer provenance-aware molecular networks

    OpenAIRE

    Aslaoui-Errafi, Zahira; Cohen-Boulakia, Sarah; Froidevaux, Christine; Gloaguen, Pauline; Poupon, Anne; Rougny, Adrien; Yahiaoui, Meriem

    2012-01-01

    International audience; Providing techniques to automatically infer molecular networks is particularly important to understand complex relationships between biological objects. We present a logic-based method to infer such networks and show how it allows inferring signalling networks from the design of a knowledge base. Provenance of inferred data has been carefully collected, allowing quality evaluation. More precisely, our method (i) takes into account various kinds of biological experiment...

  13. Providing Global Change Information for Decision-Making: Capturing and Presenting Provenance

    Science.gov (United States)

    Ma, Xiaogang; Fox, Peter; Tilmes, Curt; Jacobs, Katherine; Waple, Anne

    2014-01-01

    Global change information demands access to data sources and well-documented provenance to provide evidence needed to build confidence in scientific conclusions and, in specific applications, to ensure the information's suitability for use in decision-making. A new generation of Web technology, the Semantic Web, provides tools for that purpose. The topic of global change covers changes in the global environment (including alterations in climate, land productivity, oceans or other water resources, atmospheric composition and or chemistry, and ecological systems) that may alter the capacity of the Earth to sustain life and support human systems. Data and findings associated with global change research are of great public, government, and academic concern and are used in policy and decision-making, which makes the provenance of global change information especially important. In addition, since different types of decisions benefit from different types of information, understanding how to capture and present the provenance of global change information is becoming more of an imperative in adaptive planning.

  14. Prevalence and Epidemiological Characteristics of Endoscopically Proven Reflux Esophagitis in Children in Korea.

    Science.gov (United States)

    Yang, Aram; Kang, Ben; Choe, Jae Young; Kim, Hye Seung; Kim, Kyunga; Choe, Yon Ho

    2017-09-01

    The prevalence of reflux esophagitis (RE) has increased recently in Korea. Little is known concerning the prevalence and characteristics of RE in pediatric patients. This study investigated the prevalence and influence of risk factors in endoscopically proven RE in Korea in pediatric patients over a period of 14 years. A retrospective chart review of all patients between the ages of 1 month and 20 years who underwent esophagogastroduodenoscopy at Samsung Medical Center between 2001 and 2014 was carried out. Univariate and multivariate analyses were conducted to identify independent risk factors for RE. The prevalence rate of endoscopically proven RE in this study was 28.7% (978/3,413). The prevalence of RE increased from 11.8% from 2001 to 2007 to 37.7% from 2008 to 2014. Multivariate logistic regression analysis revealed that residency in the Greater Gangnam area (odds ratio [OR], 1.21; 95% confidence interval [CI], 1.02-1.44) and age (OR, 1.13; 95% CI, 1.11-1.15) were significant predictive factors for the presence of RE. The prevalence rate of endoscopically proven pediatric RE has increased over the past 14 years. Residency and older age are more important independent risk factors for pediatric RE in Korea.

  15. Provenance for actionable data products and indicators in marine ecosystem assessments

    Science.gov (United States)

    Beaulieu, S. E.; Maffei, A. R.; Fox, P. A.; West, P.; Di Stefano, M.; Hare, J. A.; Fogarty, M.

    2013-12-01

    Ecosystem-based management of Large Marine Ecosystems (LMEs) involves the sharing of data and information products among a diverse set of stakeholders - from environmental and fisheries scientists to policy makers, commercial entities, nonprofits, and the public. Often the data products that are shared have resulted from a number of processing steps and may also have involved the combination of a number of data sources. The traceability from an actionable data product or indicator back to its original data source(s) is important not just for trust and understanding of each final data product, but also to compare with similar data products produced by the different stakeholder groups. For a data product to be traceable, its provenance, i.e., lineage or history, must be recorded and preferably machine-readable. We are collaborating on a use case to develop a software framework for the bi-annual Ecosystem Status Report (ESR) for the U.S. Northeast Shelf LME. The ESR presents indicators of ecosystem status including climate forcing, primary and secondary production, anthropogenic factors, and integrated ecosystem measures. Our software framework retrieves data, conducts standard analyses, provides iterative and interactive visualization, and generates final graphics for the ESR. The specific process for each data and information product is updated in a metadata template, including data source, code versioning, attribution, and related contextual information suitable for traceability, repeatability, explanation, verification, and validation. Here we present the use of standard metadata for provenance for data products in the ESR, in particular the W3C provenance (PROV) family of specifications, including the PROV-O ontology which maps the PROV data model to RDF. We are also exploring extensions to PROV-O in development (e.g., PROV-ES for Earth Science Data Systems, D-PROV for workflow structure). To associate data products in the ESR to domain-specific ontologies we are

  16. Provenance-by-environment interaction of reproductive traits in the invasion of Spartina alterniflora in China.

    Science.gov (United States)

    Liu, Wenwen; Strong, Donald R; Pennings, Steven C; Zhang, Yihui

    2017-06-01

    Ecological invasions are facilitated by pre-adaptation and phenotypic plasticity, upon which evolution can act. The rapid invasion of the intertidal grass Spartina alterniflora in China during the last 36 yr is a test case for the roles of these mechanisms. A previous study of S. alterniflora in China found strong latitudinal clines in vegetative and sexual traits and concluded that most of this variation was due to phenotypic plasticity. Recent observations suggested provenance-by-environment interactions, and we employed common gardens at multiple latitudes as a test of this idea. Phenotypically, field plant height, which correlates strongly with biomass and other indices of vegetative performance in this species, showed a hump-shaped relationship across 10 sites, covering 19° of latitude; field seed set increased linearly with latitude. To assess the role of plasticity vs. genetic differentiation in these patterns, we grew plants from the ten field sites in three common gardens at low (20.9° N), mid (28.3° N), and high (38.0° N) latitudes to maturity, at 18 months. Plant height varied among common gardens, with the tallest plants at mid latitude, mirroring the field pattern, consistent with the previous study. Within the gardens, latitude of origin also affected plant height. Seed set varied among the gardens, with the greatest values at high latitudes, again mirroring the field pattern and indicating substantial plasticity. Evidence of evolution was found as increasing seed set with latitude among provenances within common gardens. However, the effect differed among common gardens, with the greatest slope in the high-latitude garden, lower slope in the mid-latitude garden, and no relationship in the low-latitude garden, indicating a provenance-by-environment interaction. The number of surviving plants also suggested a provenance-by-environment interaction; no relationship with latitude among provenances in the two southern gardens and increasing survival

  17. Features of Scots pine radial growth in conditions of provenance trial.

    Science.gov (United States)

    Kuzmin, Sergey; Kuzmina, Nina

    2013-04-01

    Provenance trial of Scots pine in Boguchany forestry of Krasnoyarsk krai is conducted on two different soils - dark-grey loam forest soil and sod-podzol sandy soil. Complex of negative factors for plant growth and development appears in dry conditions of sandy soil. It could results in decrease of resistance to diseases. Sandy soils in different climatic zones have such common traits as low absorbing capacity, poorness of elemental nutrition, low microbiological activity and moisture capacity, very high water permeability. But Scots pine trees growing in such conditions could have certain advantages and perspectives of use. In the scope of climate change (global warming) the study of Scots pine growth on sandy soil become urgent because of more frequent appearance of dry seasons. Purpose of the work is revelation of radial growth features of Scots pine with different origin in dry conditions of sandy soil and assessment of external factors influence. The main feature of radial growth of majority of studied pine provenances in conditions of sandy soil is presence of significant variation of increment with distinct decline in 25-years old with loss of tree rings in a number of cases. The reason of it is complex of factors: deficit of June precipitation and next following outbreak of fungal disease. Found «frost rings» for all trees of studied clymatypes in 1992 are the consequence of temperature decline from May 21 to June 2 - from 23 down to 2 degree Celsius. Perspective climatypes with biggest radial increments and least sensitivity to fungal disease were revealed. Eniseysk and Vikhorevka (from Krasnoyarsk krai and Irkutsk oblast)provenances of pine have the biggest radial increments, the least sensitivity to Cenangium dieback and smallest increments decline. These climatypes are in the group of perspective provenances and in present time they are recommended for wide trial in the region for future use in plantation forest growing. Kandalaksha (Murmansk oblast

  18. Performance of 19-year-old provenances of Liquidambar styraciflua in Paraguaçu Paulista, São Paulo

    Directory of Open Access Journals (Sweden)

    Alexandre Magno Sebbenn

    2007-01-01

    Full Text Available The genetic variation in the growth of seven 19-year-old Liquidambar styraciflua provenances was studied inParaguaçu Paulista, São Paulo State, Brazil. The trial was established in a complete randomized block design with sevenprovenances, four replications and twelve-tree square plots. Significant differences among provenances were detected fordiameter at breast height, height and volume, indicating the possibility of increasing timber yield through selection of the mostproductive provenances. Genetic correlations between growth traits were high and statistically significant. The provenancefrom Finca las Victorias, Guatemala had the best and the provenance from Franklin, Virginia, United States the poorestperformance for all traits. A growth comparison of Pinus caribaea var. bahamensis with the best provenance at the same siteindicated that the potential of L. styraciflua for silviculture in the region of Paraguaçu Paulista is high.

  19. Drought effects on root and needle terpenoid content of a coastal and an interior Douglas fir provenance.

    Science.gov (United States)

    Kleiber, Anita; Duan, Qiuxiao; Jansen, Kirstin; Verena Junker, Laura; Kammerer, Bernd; Rennenberg, Heinz; Ensminger, Ingo; Gessler, Arthur; Kreuzwieser, Jürgen

    2017-12-01

    Douglas fir (Pseudotsuga menziesii) is a conifer species that stores large amounts of terpenoids, mainly monoterpenoids in resin ducts of various tissues. The effects of drought on stored leaf terpenoid concentrations in trees are scarcely studied and published data are partially controversial, since reduced, unaffected or elevated terpenoid contents due to drought have been reported. Even less is known on the effect of drought on root terpenoids. In the present work, we investigated the effect of reduced water availability on the terpenoid content in roots and needles of Douglas fir seedlings. Two contrasting Douglas fir provenances were studied: an interior provenance (var. glauca) with assumed higher drought resistance, and a coastal provenance (var. menziesii) with assumed lower drought resistance. We tested the hypothesis that both provenances show specific patterns of stored terpenoids and that the patterns will change in response to drought in both, needles and roots. We further expected stronger changes in the less drought tolerant coastal provenance. For this purpose, we performed an experiment under controlled conditions, in which the trees were exposed to moderate and severe drought stress. According to our expectations, the study revealed clear provenance-specific terpenoid patterns in needles. However, such patterns were not detected in the roots. Drought slightly increased the needle terpenoid contents of the coastal but not of the interior provenance. We also observed increased terpenoid abundance mainly in roots of the moderately stressed coastal provenance. Overall, from the observed provenance-specific reactions with increased terpenoid levels in trees of the coastal origin in response to drought, we conclude on functions of terpenoids for abiotic stress tolerance that might be fulfilled by other, constitutively expressed mechanisms in drought-adapted interior provenances. © The Author 2017. Published by Oxford University Press. All rights

  20. Can the provenance of the conflict minerals columbite and tantalite be ascertained by laser-induced breakdown spectroscopy?

    Energy Technology Data Exchange (ETDEWEB)

    Harmon, Russell S. [ARL Army Research Office, Environmental Sciences Division, Durham, NC (United States); Shughrue, Katrina M.; Hark, Richard R. [Juniata College, Department of Chemistry, Huntingdon, PA (United States); Remus, Jeremiah J. [Clarkson University, Department of Electrical and Computer Engineering, Potsdam, NY (United States); Wise, Michael A. [Smithsonian Institution, Department of Mineral Sciences, Washington, DC (United States); East, Lucille J. [Applied Spectra, Inc., Fremont, CA (United States)

    2011-07-15

    Conflict minerals is a term applied to ores mined in conditions of armed conflict and human rights abuse. Niobium and tantalum are two rare metals whose primary natural occurrence is in the complex oxide minerals columbite and tantalite, the ore of which is commonly referred to as coltan. The illicit export of coltan ore from the Democratic Republic of the Congo is thought to be responsible for financing the ongoing civil conflicts in this region. Determining the chemical composition of an ore is one of the means of ascertaining its provenance. Laser-induced breakdown spectroscopy (LIBS) offers a means of rapidly distinguishing different geographic sources for a mineral because the LIBS plasma emission spectrum provides the complete chemical composition (i.e., ''chemical fingerprint'') of any material in real time. To test this idea for columbite-tantalite, three sample sets were analyzed. Partial least squares discriminant analysis (PLSDA) allows correct sample-level geographic discrimination at a success rate exceeding 90%. (orig.)

  1. Effect of provenance, plant part and processing on extract profiles from cultivated European Rhodiola rosea L. for medicinal use.

    Science.gov (United States)

    Peschel, Wieland; Prieto, José M; Karkour, Caroline; Williamson, Elizabeth M

    2013-02-01

    The demand for plant material of Rhodiola rosea L. (Crassulaceae) for medicinal use has increased recently, amid concerns about its quality and sustainability. We have analysed the content of phenylpropanoids (total rosavins) and salidroside in liquid extracts from 3-year old cultivated plants of European origin, and mapped the influence of plant part (rhizome versus root), genotype, drying, cutting, and extraction solvent to chemical composition. Rhizomes contained 1.5-4 times more salidroside (0.3-0.4% dry wt) and total rosavins (1.2-3.0%) than roots. The qualitative decisive phenylpropanoid content in the extracts was most influenced by plant part, solvent, and genotype, while drying temperature and cutting conditions were of less importance. We have shown that R. rosea from different boreal European provenances can be grown under temperate conditions and identified factors to obtain consistent high quality extracts provided that authentic germplasm is used and distinguished between rhizome, roots and their mixtures. Copyright © 2012 Elsevier Ltd. All rights reserved.

  2. Geochemistry and sedimentary provenance of the Upper Cretaceous Uberaba Formation (Southeastern Triângulo Mineiro, MG, Brazil

    Directory of Open Access Journals (Sweden)

    Dennis Arthuso Quintão

    Full Text Available ABSTRACT: The campanian Uberaba Formation, which crops out around the homonymous town, is composed of greenish lithic sandstones and conglomerates with possible volcanoclastic contribution. In this unit, heavy minerals such as ilmenite, garnet, perovskite and magnetite, besides clinopyroxene, plagioclase, quartz, calcite and apatite, are found. The Uberaba Formation geochemistry is marked by high grades of Ba, Ta, La, Nb and Th, with flat (no Eu anomaly and highly fractionated (LaN/YbN = ca. 128 chondrite-normalized rare earth elements. Mineral chemistry analyses of detrital garnets from the Uberaba Formation indicate the predominance of chorlomite with an affinity to crustal garnets (G3. The sedimentary provenance of the Uberaba Formation corresponds to a mixing of materials from the alkaline districts of the Alto Paranaíba and from the erosion of the Serra Geral Formation and the Canastra and Araxá groups. Diamond-producing conglomerates which crop out nearby, in Romaria, were considered by some authors as correlated to the Uberaba Formation. However, the composition of garnets recovered from those conglomerates is different, plotting in the field of mantle garnets (G9/G10. We consider, then, that those units are not correlated, and that the Uberaba Formation is not a possible source for the alluvial diamonds found in the homonymous river.

  3. Does origin always matter? Evaluating the influence of nonlocal seed provenances for ecological restoration purposes in a widespread and outcrossing plant species.

    Science.gov (United States)

    Reiker, Jutta; Schulz, Benjamin; Wissemann, Volker; Gemeinholzer, Birgit

    2015-12-01

    For restoration purposes, nature conservation generally enforces the use of local seed material based on the "local-is-best" (LIB) approach. However, in some cases recommendations to refrain from this approach have been made. Here we test if a common widespread species with no obvious signs of local adaptation may be a candidate species for abandoning LIB during restoration. Using 10 microsatellite markers we compared population genetic patterns of the generalist species Daucus carota in indigenous and formerly restored sites (nonlocal seed provenances). Gene diversity overall ranged between H e = 0.67 and 0.86 and showed no significant differences between the two groups. Hierarchical AMOVA and principal component analysis revealed very high genetic population admixture and negligible differentiation between indigenous and restored sites (F CT = 0.002). Moreover, differentiation between groups was caused by only one outlier population, where inbreeding effects are presumed. We therefore conclude that the introduction of nonlocal seed provenances in the course of landscape restoration did not jeopardize regional species persistence by contributing to inbreeding or outbreeding depressions, or any measurable adverse population genetic effect. On the basis of these results, we see no obvious objections to the current practice to use the 10-fold cheaper, nonlocal seed material of D. carota for restoration projects.

  4. QEMSCAN+LA-ICP-MS: a 'big data' generator for sedimentary provenance analysis

    Science.gov (United States)

    Vermeesch, Pieter; Rittner, Martin; Garzanti, Eduardo

    2017-04-01

    Sedimentary provenance may be traced by 'fingerprinting' sediments with chemical, mineralogical or isotopic means. Normally, each of these provenance proxies is characterised on a separate aliquot of the same sample. For example, the chemical composition of the bulk sample may be analysed by X-ray fluorescence (XRF) on one aliquot, framework petrography on another, heavy mineral analysis on a density separate of a third split, and zircon U-Pb dating on a further density separate of the heavy mineral fraction. The labour intensity of this procedure holds back the widespread application of multi-method provenance studies. We here present a new method to solve this problem and avoid mineral separation by coupling a QEMSCAN electron microscope to an LA-ICP-MS instrument and thereby generate all four aforementioned provenance datasets as part of the same workflow. Given a polished hand specimen, a petrographic thin section, or a grain mount, the QEMSCAN+LA-ICP-MS method produces chemical and mineralogical maps from which the X-Y coordinates of the datable mineral are extracted. These coordinates are subsequently passed on to the laser ablation system for isotopic and, hence, geochronological analysis. In the process of finding all the zircons in a sediment grain mount, the QEMSCAN yields the compositional and mineralogical compositions as byproducts. We have applied the new QEMSCAN+LA-ICP-MS instrument suite to over 100 samples from three large sediment routing systems: (1) the Tigris-Euphrates river catchments and Rub' Al Khali desert in Arabia; (2) the Nile catchment in northeast Africa and (3) desert and beach sands between the Orange and Congo rivers in southwest Africa. These studies reveal (1) that Rub' Al Khali sand is predominantly derived from the Arabian Shield and not from Mesopotamia; (2) that the Blue Nile is the principal source of Nile sand; and (3) that Orange River sand is carried northward by longshore drift nearly 1,800km from South Africa to southern

  5. Recent advances in dentin hypersensitivity: clinically proven treatments for instant and lasting sensitivity relief.

    Science.gov (United States)

    Cummins, Diane

    2010-05-01

    To provide a brief overview of the diagnosis, epidemiology, etiology and clinical management of dentin hypersensitivity, to discuss technical approaches to relieve sensitivity, with special emphasis on dentin tubule occlusion and the clinical evidence for efficacy of desensitizing toothpastes based upon this approach, and to summarize the science behind a new dentifrice technology, based upon arginine and calcium carbonate, and the clinical evidence which proves that it delivers both instant and lasting relief of dentin hypersensitivity. Clinical studies have shown that a new toothpaste, containing arginine and calcium carbonate (known as Pro-Argin technology) with 1450 ppm fluoride, offers clinically proven instant and lasting relief of dentin hypersensitivity. Three 8-week clinical studies have shown that this new toothpaste provides statistically significantly superior efficacy in reducing sensitivity to market leading desensitizing toothpastes containing 2% potassium ion. Importantly, three further clinical studies have shown that a single direct topical application of toothpaste to sensitive teeth, using a fingertip or cotton swab followed by 1 minute of massage, resulted in instant relief of dentin hypersensitivity and that the relief was maintained with subsequent twice-daily brushing. Mechanism of action studies have shown that this technology physically seals dentin tubules with a plug that contains arginine, calcium carbonate and phosphate. This plug, which is resistant to normal pulpal pressures and to acid challenge, effectively reduces dentin fluid flow and thereby relieves sensitivity. A new whitening variant of this desensitizing toothpaste, containing the Pro-Argin technology, fluoride and a high cleaning calcium carbonate system, has now been clinically and scientifically validated. This toothpaste works by the same mechanism of action as its non-whitening counterpart and is clinically proven to provide both instant and lasting relief of

  6. Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest.

    Science.gov (United States)

    Kueppers, Lara M; Conlisk, Erin; Castanha, Cristina; Moyes, Andrew B; Germino, Matthew J; de Valpine, Perry; Torn, Margaret S; Mitton, Jeffry B

    2017-06-01

    Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, but raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower

  7. Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest

    Science.gov (United States)

    Kueppers, Lara M.; Conlisk, Erin; Castanha, Cristina; Moyes, Andrew B.; Germino, Matthew; de Valpine, Perry; Torn, Margaret S.; Mitton, Jeffry B.

    2017-01-01

    Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, but raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower

  8. Effects of temperature and drought manipulations on seedlings of Scots pine provenances.

    Science.gov (United States)

    Taeger, S; Sparks, T H; Menzel, A

    2015-03-01

    Rising temperatures and more frequent and severe climatic extremes as a consequence of climate change are expected to affect growth and distribution of tree species that are adapted to current local conditions. Species distribution models predict a considerable loss of habitats for Pinus sylvestris. These models do not consider possible intraspecific differences in response to drought and warming that could buffer those impacts. We tested 10 European provenances of P. sylvestris, from the southwestern to the central European part of the species distribution, for their response to warming and to drought using a factorial design. In this common-garden experiment the air surrounding plants was heated directly to prevent excessive soil heating, and drought manipulation, using a rain-out shelter, permitted almost natural radiation, including high light stress. Plant responses were assessed as changes in phenology, growth increment and biomass allocation. Seedlings of P. sylvestris revealed a plastic response to drought by increased taproot length and root-shoot ratios. Strongest phenotypic plasticity of root growth was found for southwestern provenances, indicating a specific drought adaptation at the cost of overall low growth of aboveground structures even under non-drought conditions. Warming had a minor effect on growth but advanced phenological development and had a contrasting effect on bud biomass and diameter increment, depending on water availability. The intraspecific variation of P. sylvestris provenances could buffer climate change impacts, although additional factors such as the adaptation to other climatic extremes have to be considered before assisted migration could become a management option. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands.

  9. Provenance and paleogeography of the Devonian Durazno Group, southern Parana Basin in Uruguay

    Science.gov (United States)

    Uriz, N. J.; Cingolani, C. A.; Basei, M. A. S.; Blanco, G.; Abre, P.; Portillo, N. S.; Siccardi, A.

    2016-03-01

    A succession of Devonian cover rocks occurs in outcrop and in the subsurface of central-northern Uruguay where they were deposited in an intracratonic basin. This Durazno Group comprises three distinct stratigraphic units, namely the Cerrezuelo, Cordobés and La Paloma formations. The Durazno Group does not exceed 300 m of average thickness and preserves a transgressive-regressive cycle within a shallow-marine siliciclastic shelf platform, and is characterized by an assemblage of invertebrate fossils of Malvinokaffric affinity especially within the Lower Devonian Cordobés shales. The sedimentary provenance of the Durazno Group was determined using petrography, geochemistry, and morphological studies of detrital zircons as well as their U-Pb ages. Sandstone petrography of Cerrezuelo and La Paloma sequences shows that they have a dominantly quartz-feldspathic composition with a minor contribution of other minerals. Whole-rock geochemical data indicate that alteration was strong in each of the three formations studied; chondritic-normalized REE patterns essentially parallel to PAAS, the presence of a negative Eu-anomaly, and Th/Sc and La/Hf ratios point to an average source composition similar to UCC or slightly more felsic. Within the Cerrezuelo Formation, recycling of older volcano-metasedimentary sources is interpreted from Zr/Sc ratios and high Hf, Zr, and REE concentrations. U-Pb detrital zircon age populations of the Cerrezuelo and La Paloma formations indicate that the principal source terranes are of Neoproterozoic age, but include also minor populations derived from Mesoproterozoic and Archean-Paleoproterozoic rocks. A provenance from the Cuchilla Dionisio-Dom Feliciano, Nico Pérez and Piedra Alta terranes of Uruguay and southern Brazil is likely. This study establishes an intracratonic extensional tectonic setting during Durazno time. Considering provenance age sources, regional paleocurrent distributions and the established orogenic history recorded in SW

  10. Long-term visual and systemic prognoses of 83 cases of biopsy-proven sarcoid uveitis.

    Science.gov (United States)

    Rochepeau, Cédric; Jamilloux, Yvan; Kerever, Sebastien; Febvay, Camille; Perard, Laurent; Broussolle, Christiane; Burillon, Carole; Kodjikian, Laurent; Seve, Pascal

    2017-07-01

    To determine the long-term visual and systemic outcomes of uveitis patients with biopsy-proven sarcoidosis. A retrospective study of biopsy-proven sarcoid uveitis, with a 3-year minimum follow-up, seen at Lyon University Hospital, between April 2004 and January 2016. A total of 83 patients were included, with a median age at onset of 52 (37-62) years and an unbalanced gender ratio (women 77.1%). Thirty-one patients had original systemic sarcoidosis in addition to ocular localisation, whereas 52 initially presented with isolated sarcoid uveitis. Among the latter, 7.7% (n=4) developed an extraocular disease after a median follow-up duration of 60 (44-110) months. The systemic spread in these patients included cutaneous sarcoids (n=2), arthritis (n=1) and multiple mononeuritis (n=1). Complete visual recovery was obtained for 60.2% of all patients and 89.2% had retrieved best-corrected visual acuity (BCVA) >20/50 in both eyes. A unilateral loss of BCVA of worse than 20/200 was documented in two patients in the isolated sarcoid uveitis group. No patient suffered from bilateral severe visual impairment or blindness. Factors linked to a poor visual prognosis, defined by BCVA ≤20/50 in at least one eye, were chronic macular oedema (p=0.009) and persistent ocular inflammation (p=0.0005). In this large European series of biopsy-proven sarcoidosis to date, with a prolonged follow-up, sarcoid uveitis was suggestive of a favourable systemic and visual outcome. Clinically isolated uveitis that revealed sarcoidosis remained a strictly ocular condition in most cases. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

  11. Mineral composition and geochemistry of the Upper Cretaceous siliciclastics (Nubia Group), Aswan District, south Egypt: Implications for provenance and weathering

    Science.gov (United States)

    Hassan, Abdallah M.

    2017-11-01

    The Upper-Cretaceous clastic succession (Nubia Group) in the area northeast of Aswan includes three rock units, from base upwards: Abu Aggag Formation (Turonian), Timsah Formation (Coniacian -Santonian) and Um Barmil Formation (Santonian - Campanian). Quartz and clay minerals are the predominant phases throughout the whole succession while feldspars are very rare. Kaolinite is overwhelming among the clay minerals, in addition to less important amounts of illite and illite/smectite. The ultrastable heavy minerals are the prevailing non- opaque phases and they significantly change in relative abundance upsection. SiO2, Al2O3 and Fe2O3 are the dominant chemical components. The statistical examination had revealed that the chemical constituents are loaded on three main geochemical trends; the siliceous, the argillaceous and the ferruginous. The enrichment factor shows that the geochemical behavior of the major and trace elements is uniform throughout the sandstones and mudstones of the Abu Aggag Formation. A significant geochemical contrast is documented between the sandstones and mudstones of both the Timsah and the Um Barmil formations. The provenance - critical elemental ratios Ti/Nb and Ti/Y are nearly constant throughout the sandstones and mudstones of the Abu Aggag Formation, and they fall within the range of granitic-granodioritic composition. The Timsah sandstones have Ti/Nb and Ti/Y ratios that are consistent with those of the Abu Aggag rocks, suggesting a similar provenance. These elemental ratios are extremely higher in the Timsah mudstones, reflecting a great influx of mafic material. The Um Barmil sandstones exhibit exceedingly dispersed values of Ti/Nb and Ti/Y, reflecting their derivation from large catchment's areas of different rock types with the eroded products being mixed in various relative proportions. The Ti/Nb and Ti/Y of the Um Barmil mudstones are closely akin to those of the Timsah mudstones suggesting analogous source. The chemical index of

  12. The Bøle ship, Skien, Norway - Research history, dendrochronology and provenance

    DEFF Research Database (Denmark)

    Daly, Aoife; Nymoen, Pål

    2008-01-01

    The wreck-site at Bøle near Skien was first reported in 1950 during dredging in the river. The Bøle ship is one of the most significant medieval ship-finds in Norway, and the manner of its discovery is referred to as a tragedy in ship archaeology. New investigations at the site in 2004–2006 revea......–2006 revealed more fragments from the vessel and its cargo, and the ship is now the object of new studies. This article presents a description of the ship and its context, and the results of an initial dendrochronological analysis and provenance determination.© 2007 The Authors...

  13. Gênero em desafio: das trobairitz provençais às repentistas nordestinas

    OpenAIRE

    Luciana Eleonora de Freitas Calado Deplagne

    2010-01-01

    This article spaeks of the poetics of the oral tradition sung by women during the Middle Ages and in nowadays Northeast Brazil. Thus, we try to identify the dialogue between the matches of women repentistas and the dialogued medieval songs – the tensons of the provençal trobairitz and the satirical verses of the women poets from the Al-andalus. The proximity is due not only in the formal level, but also in the thematic, specially in the gendered debate over these female production.

  14. Gênero em desafio: das trobairitz provençais às repentistas nordestinas

    Directory of Open Access Journals (Sweden)

    Luciana Eleonora de Freitas Calado Deplagne

    2010-01-01

    Full Text Available This article spaeks of the poetics of the oral tradition sung by women during the Middle Ages and in nowadays Northeast Brazil. Thus, we try to identify the dialogue between the matches of women repentistas and the dialogued medieval songs – the tensons of the provençal trobairitz and the satirical verses of the women poets from the Al-andalus. The proximity is due not only in the formal level, but also in the thematic, specially in the gendered debate over these female production.

  15. Challenge-proven immediate type multiple local anesthetic hypersensitivity in a child.

    Science.gov (United States)

    Ertoy Karagol, I; Yilmaz, O; Bakirtas, A

    2016-01-01

    Adverse reactions to local anesthetics (LA) are commonly reported in patients undergoing dental procedures and other minor surgical procedures. Most of these reactions, however, originate from psychosomatic, vasovagal or toxic conditions and are not immune-mediated. True immune-mediated reactions are considered extremely rare and are estimated to account for less than 1% of all adverse reactions to LA. On the other hand, almost all of the immune-mediated LA reactions that have been reported are related to adult patients. Here, however, we will present a pediatric case proven to be hypersensitive to two different amide-derivative LA's.

  16. The Karschau ship, Schleswig-Holstein: Dendrochronological results and timber provenance

    DEFF Research Database (Denmark)

    Daly, Aoife

    2007-01-01

    The felling of the oak trees used to build the Karschau ship took place in or around the AD 1140s. The tree-ring curves from the oak planks from the Karschau Ship match best with site-means from Odense, a medieval town on the island of Funen, Denmark. New research being carried out by the author...... is allowing the determination of the provenance of ancient oak to a more local level. Through this dendrochronological research, it is now possible to differentiate between small regions of timber sources for shipbuilding, allowing a more nuanced interpretation. © 2006 The Author...

  17. Emergency Contraception: A Wareness And Knowledge Among ...

    African Journals Online (AJOL)

    Most of the hospital workers were not aware of emergency contraceptive methods. 59.9% were not aware of emergency contraceptive pills, while 81.4% were not aware of the use of intrauterine contraceptive device. Medical and Paramedical workers show more awareness about emergency contraception than non-medical ...

  18. Provenance of the Lower Paleozoic Balcarce Formation (Tandilia System, Buenos Aires Province, Argentina): Implications for paleogeographic reconstructions of SW Gondwana

    Science.gov (United States)

    Zimmermann, Udo; Spalletti, Luis A.

    2009-07-01

    Lower Paleozoic moderately sorted quartz-arenites from the Balcarce Formation deposited in eastern Argentina (Tandilia System) comprise mainly detrital material derived from old upper crustal material. The sources were magmatic, sedimentary, and subordinated felsic metamorphic terranes. High concentrations of tourmaline and Ti-rich heavy minerals, including zircon and nearly euhedral chromite, are common. Trace element concentrations (Nb, Cr) on rutile indicate pelitic and metabasaltic sources, respectively. Major element analyses on chromites indicate a basic volcanic protolith of mid-oceanic ridge origin, which was exposed close to the depositional basin. The delivery of chromite may be associated with convergent tectonics causing the consumption and obduction of oceanic crust during pre-Upper Ordovician times. The oblique/orthogonal collision of the Precordillera Terrane with the western border of the Rio de la Plata Craton, west of the Balcarce Basin or source further to the east from a Lower Palaeozoic extensional basin are possibilities. Geochemical and petrographic data exclude the underlying Precambrian and Cambrian sedimentary rocks as dominant sources, and favour the basement of the Río de La Plata Craton, including Cambrian rift-related granites of South Africa and the Sierras Australes (eastern Argentina), as main suppliers of detritus. Trace element geochemistry of recycled pyroclastic material, associated with the quartz-arenites, also suggests volcanic arc sources. The provenance of the pyroclastic material may either be the Puna-Famatina arc, located in north and central Argentina, or a hypothetical active margin further to the south. These ash layers are equivalent in age to volcanic zircons found in the Devonian Bokkeveld Group in western South Africa. The deposition of a glacial diamictite of Hirnantian age (Sierra del Volcán Diamictite) is interpreted as a member of the Balcarce Formation. Based on the stratigraphic re-location of the glacial

  19. [Effects of phosphorus stress on the growth and nitrogen and phosphorus absorption of different Formosan sweet gum provenances].

    Science.gov (United States)

    Leng, Hua-Ni; Chen, Yi-Tai; Duan, Hong-Ping; Rao, Long-Bing; Wang, Yong-Jun; Hu, Yun-Xue

    2009-04-01

    Aiming at the ecological value of Formosan sweet gum (Liquidambar formosana) as a pioneer species and the status of red soil phosphorus (P) deficiency, a sand culture experiment of split design was conducted to study the responses of three-leaf stage seedlings of seven Formosan sweet gum provenances from Yixing of Jiangsu, Jingxian of Anhui, Yongkang of Zhejiang, Nanchang of Jiangxi, Shaowu of Fujian, Yanping of Fujian, and Nandan of Guangxi to four levels of P (P0, P1/2, P1, P2). With increasing P stress, the biomass and the N and P absorption of test provenances decreased, whereas the utilization efficiency increased. In higher P treatments, the provenances from Nanchang and Yixing had higher biomass and higher N and P absorption but lower utilization efficiency, while the provenance from Nandan had lower N and P absorption but higher utilization efficiency. In lower P treatments, the biomass and the P absorption and utilization efficiency of the provenances from Nanchang and Nandan were all higher. All the results illustrated that the provenances with high biomass had high P absorption at high P level, and had both high P absorption and high utilization efficiency at low P level. The provenance from Nanchang could be considered to be an excellent P stress-resistant provenance, followed by that from Nandan. Phosphorus was not a limiting nutritional factor of Formosan sweet gum, biomass, leaf delta (N/P) ratio and P efficiency could be used as the indicators of P stress-tolerance of Formosan sweet gum provenances.

  20. An ecological genetic delineation of local seed-source provenance for ecological restoration.

    Science.gov (United States)

    Krauss, Siegfried L; Sinclair, Elizabeth A; Bussell, John D; Hobbs, Richard J

    2013-07-01

    An increasingly important practical application of the analysis of spatial genetic structure within plant species is to help define the extent of local provenance seed collection zones that minimize negative impacts in ecological restoration programs. Here, we derive seed sourcing guidelines from a novel range-wide assessment of spatial genetic structure of 24 populations of Banksia menziesii (Proteaceae), a widely distributed Western Australian tree of significance in local ecological restoration programs. An analysis of molecular variance (AMOVA) of 100 amplified fragment length polymorphism (AFLP) markers revealed significant genetic differentiation among populations (ΦPT = 0.18). Pairwise population genetic dissimilarity was correlated with geographic distance, but not environmental distance derived from 15 climate variables, suggesting overall neutrality of these markers with regard to these climate variables. Nevertheless, Bayesian outlier analysis identified four markers potentially under selection, although these were not correlated with the climate variables. We calculated a global R-statistic using analysis of similarities (ANOSIM) to test the statistical significance of population differentiation and to infer a threshold seed collection zone distance of ∼60 km (all markers) and 100 km (outlier markers) when genetic distance was regressed against geographic distance. Population pairs separated by >60 km were, on average, twice as likely to be significantly genetically differentiated than population pairs separated by provenance seed collection zone for B. menziesii. Our approach is a novel probability-based practical solution for the delineation of a local seed collection zone to minimize negative genetic impacts in ecological restoration.

  1. Provenance information as a tool for addressing engineered nanoparticle reproducibility challenges.

    Science.gov (United States)

    Baer, Donald R; Munusamy, Prabhakaran; Thrall, Brian D

    2016-10-19

    Nanoparticles of various types are of increasing research and technological importance in biological and other applications. Difficulties in the production and delivery of nanoparticles with consistent and well defined properties appear in many forms and have a variety of causes. Among several issues are those associated with incomplete information about the history of particles involved in research studies, including the synthesis method, sample history after synthesis, including time and nature of storage, and the detailed nature of any sample processing or modification. In addition, the tendency of particles to change with time or environmental condition suggests that the time between analysis and application is important and some type of consistency or verification process can be important. The essential history of a set of particles can be identified as provenance information and tells the origin or source of a batch of nano-objects along with information related to handling and any changes that may have taken place since it was originated. A record of sample provenance information for a set of particles can play a useful role in identifying some of the sources and decreasing the extent of particle variability and the lack of reproducibility observed by many researchers.

  2. Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline

    Science.gov (United States)

    Dinov, Ivo; Lozev, Kamen; Petrosyan, Petros; Liu, Zhizhong; Eggert, Paul; Pierce, Jonathan; Zamanyan, Alen; Chakrapani, Shruthi; Van Horn, John; Parker, D. Stott; Magsipoc, Rico; Leung, Kelvin; Gutman, Boris; Woods, Roger; Toga, Arthur

    2010-01-01

    Modern computational neuroscience employs diverse software tools and multidisciplinary expertise to analyze heterogeneous brain data. The classical problems of gathering meaningful data, fitting specific models, and discovering appropriate analysis and visualization tools give way to a new class of computational challenges—management of large and incongruous data, integration and interoperability of computational resources, and data provenance. We designed, implemented and validated a new paradigm for addressing these challenges in the neuroimaging field. Our solution is based on the LONI Pipeline environment [3], [4], a graphical workflow environment for constructing and executing complex data processing protocols. We developed study-design, database and visual language programming functionalities within the LONI Pipeline that enable the construction of complete, elaborate and robust graphical workflows for analyzing neuroimaging and other data. These workflows facilitate open sharing and communication of data and metadata, concrete processing protocols, result validation, and study replication among different investigators and research groups. The LONI Pipeline features include distributed grid-enabled infrastructure, virtualized execution environment, efficient integration, data provenance, validation and distribution of new computational tools, automated data format conversion, and an intuitive graphical user interface. We demonstrate the new LONI Pipeline features using large scale neuroimaging studies based on data from the International Consortium for Brain Mapping [5] and the Alzheimer's Disease Neuroimaging Initiative [6]. User guides, forums, instructions and downloads of the LONI Pipeline environment are available at http://pipeline.loni.ucla.edu. PMID:20927408

  3. Prevalence of Concomitant Sacroiliac joint Dysfunction in Patients With Image Proven Herniated Lumbar Discs

    Directory of Open Access Journals (Sweden)

    Salah Alalawi

    2009-05-01

    Full Text Available Background:Sacroiliac joint (SIJ dysfunction is a widely known but poorly defined cause of low back pain. To our knowledge, few published studies have been conducted to evaluate systematically the prevalence and significance of concomitant sacroiliac joint dysfunction in patients with herniated lumbar discs. As concomitant SIJ dysfunction in low back pain patients is likely to respond to particular noninvasive interventions such as manipulation,improved understanding of the relationship between these two diagnoses would improve clinical decision making and research.Methods:This study was designated to estimate the prevalence of concomitant sacroiliac joint dysfunction in sub acute low back pain patients with image proven discopathy and evaluate the theory that sacroiliac joint dysfunction can be a source of pain and functional disability in discopathy. A total of 202 patients with sub acute radicular back pain and MRI proven herniated lumbar discs underwent standardized   physiatrist history and physical examination, specified for detection of concomitant sacroiliac joint dysfunction.Results: Sacroiliac joint dysfunction is a concomitant finding in 72.3% of evaluated patients.There was significantly higher SIJ dysfunction prevalence in female patients (p <0.0001. Conclusion: SIJ dysfunction is a significant pathogenic factor with high possibility of occurrence in low back pain. Thus, in the presence of radicular and sacroiliac joint symptoms, SIJ dysfunction, regardless of intervertebral disc pathology, must be considered in clinical decisiomaking.

  4. Multiparametric evaluation by simultaneous PET-MRI examination in patients with histologically proven laryngeal cancer.

    Science.gov (United States)

    Cavaliere, Carlo; Romeo, Valeria; Aiello, Marco; Mesolella, Massimo; Iorio, Brigida; Barbuto, Luigi; Cantone, Elena; Nicolai, Emanuele; Covello, Mario

    2017-03-01

    To evaluate the relationship between metabolic 18Fluoro-Deoxyglucose-Positron Emission Tomography (18FDG/PET) and morpho-functional parameters derived by Magnetic Resonance Imaging (MRI) in patients with histologically proven laryngeal cancer. To assess the clinical impact of PET/MRI examination on patient's staging and treatment planning. 16 patients with histologically proven laryngeal cancer were enrolled and underwent whole body PET/CT followed by a dedicated PET/MRI of the head/neck region. Data were separately evaluated by two blinded groups: metabolic (SUV and MTV), diffusion (ADC) and perfusion (Ktrans, Ve, kep and iAUC) maps were obtained by positioning regions of interest (ROIs). Tumoral local extension assessed on PET/MRI was compared to endoscopic findings. A good inter-observer agreement was found in anatomical location and local extension of PET/MRI lesions (Cohen's kappa 0.9). PET/CT SUV measures highly correlate with ones derived by PET/MRI (e.g., p=0.96 for measures on VOI). Significant correlations among metabolic, diffusion and perfusion parameters have been detected. PET/MRI had a relevant clinical impact, confirming endoscopic findings (6 cases), helping treatment planning (9 cases), and modifying endoscopic primary staging (1 case). PET/MRI is useful for primary staging of laryngeal cancer, allowing simultaneous collection of metabolic and functional data and conditioning the therapeutic strategies. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  5. Provenance information as a tool for addressing engineered nanoparticle reproducibility challenges

    Energy Technology Data Exchange (ETDEWEB)

    Baer, Donald R.; Munusamy, Prabhakaran; Thrall, Brian D.

    2016-12-01

    Nanoparticles of various types are of increasing research and technological importance in biological and other applications. Difficulties in the production and delivery of nanoparticles with consistent and well defined properties appear in many forms and have a variety of causes. Among several issues are those associated with incomplete information about the history of particles involved in research studies including the synthesis method, sample history after synthesis including time and nature of storage and the detailed nature of any sample processing or modification. In addition, the tendency of particles to change with time or environmental condition suggests that the time between analysis and application is important and some type of consistency or verification process can be important. The essential history of a set of particles can be identified as provenance information tells the origin or source of a batch of nano-objects along with information related to handling and any changes that may have taken place since it was originated. A record of sample provenance information for a set of particles can play a useful role in identifying some of the sources and decreasing the extent of particle variability and the observed lack of reproducibility observed by many researchers.

  6. Provenance tracking for scientific software toolchains through on-demand release and archiving

    Science.gov (United States)

    Ham, David

    2017-04-01

    There is an emerging consensus that published computational science results must be backed by a provenance chain tying results to the exact versions of input data and the code which generated them. There is also now an impressive range of web services devoted to revision control of software, and the archiving in citeable form of both software and input data. However, much scientific software itself builds on libraries and toolkits, and these themselves have dependencies. Further, it is common for cutting edge research to depend on the latest version of software in online repositories, rather than the official release version. This creates a situation in which an author who wishes to follow best practice in recording the provenance chain of their results must archive and cite unreleased versions of a series of dependencies. Here, we present an alternative which toolkit authors can easily implement to provide a semi-automatic mechanism for creating and archiving custom software releases of the precise version of a package used in a particular simulation. This approach leverages the excellent services provided by GitHub and Zenodo to generate a connected set of citeable DOIs for the archived software. We present the integration of this workflow into the Firedrake automated finite element framework as a practical example of this approach in use on a complex geoscientific tool chain in practical use.

  7. Renewable Energy and Proven Oil Reserves Relation: Evidence from OPEC Members

    Directory of Open Access Journals (Sweden)

    Mehmet Arcan TUZCU

    2014-12-01

    Full Text Available The well documented literature on the relation between energy consumption and climate change has been extended by the addition of renewable energy consumption. Several studies show its impact on technical efficiency, per capita income or carbon dioxide (CO2 emission levels for developed and developing countries. However, to the extent of our knowledge, very few of them state the importance of renewable energy for the countries where the main type of fossil fuels, oil, is exported. This study aims to explore the association between renewable energy, real gross domestic product (GDP, CO2 emission level, real oil prices as well as the proven oil reserves for seven members of Organization of the Petroleum Exporting Countries (OPEC. The analyses are conducted using panel data techniques, namely fixed effect – random effect tests. Our results show a positive and significant relation between renewable energy consumption, and real GDP and CO2 emission level. A statistically not significant coefficient is found for the relation between renewable energy and the proven oil reserves. The relation between energy and real oil prices is also insignificant.

  8. Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline.

    Directory of Open Access Journals (Sweden)

    Ivo Dinov

    2010-09-01

    Full Text Available Modern computational neuroscience employs diverse software tools and multidisciplinary expertise to analyze heterogeneous brain data. The classical problems of gathering meaningful data, fitting specific models, and discovering appropriate analysis and visualization tools give way to a new class of computational challenges--management of large and incongruous data, integration and interoperability of computational resources, and data provenance. We designed, implemented and validated a new paradigm for addressing these challenges in the neuroimaging field. Our solution is based on the LONI Pipeline environment [3], [4], a graphical workflow environment for constructing and executing complex data processing protocols. We developed study-design, database and visual language programming functionalities within the LONI Pipeline that enable the construction of complete, elaborate and robust graphical workflows for analyzing neuroimaging and other data. These workflows facilitate open sharing and communication of data and metadata, concrete processing protocols, result validation, and study replication among different investigators and research groups. The LONI Pipeline features include distributed grid-enabled infrastructure, virtualized execution environment, efficient integration, data provenance, validation and distribution of new computational tools, automated data format conversion, and an intuitive graphical user interface. We demonstrate the new LONI Pipeline features using large scale neuroimaging studies based on data from the International Consortium for Brain Mapping [5] and the Alzheimer's Disease Neuroimaging Initiative [6]. User guides, forums, instructions and downloads of the LONI Pipeline environment are available at http://pipeline.loni.ucla.edu.

  9. Magnetic properties of sediments in cores from the Mandovi estuary, western India: Inferences on provenance and pollution

    Digital Repository Service at National Institute of Oceanography (India)

    Prajith, A.; Rao, V.P.; Kessarkar, P.M.

    Magnetic properties of sediments were investigated in 7 gravity cores recovered along a transect of the Mandovi estuary, western India to understand their provenance and pollution. The maximum magnetic susceptibility of sediments was at least 6...

  10. Survival and growth patterns of white spruce (Picea glauca [Moench] Voss) rangewide provenances and their implications for climate change adaptation

    OpenAIRE

    Lu, Pengxin; Parker, William H; Cherry, Marilyn; Colombo, Steve; William C. Parker; Man, Rongzhou; Roubal, Ngaire

    2014-01-01

    Intraspecific assisted migration (ISAM) through seed transfer during artificial forest regeneration has been suggested as an adaptation strategy to enhance forest resilience and productivity under future climate. In this study, we assessed the risks and benefits of ISAM in white spruce based on long-term and multilocation, rangewide provenance test data. Our results indicate that the adaptive capacity and growth potential of white spruce varied considerably among 245 range-wide provenances sa...

  11. Selection of Provenances to Adapt Tropical Pine Forestry to Climate Change on the Basis of Climate Analogs

    OpenAIRE

    William Dvorak; Johannes Signer; Andrew Jarvis; Maarten van Zonneveld; Christoph Leibing

    2013-01-01

    Pinus patula and Pinus tecunumanii play an important role in the forestry sector in the tropics and subtropics and, in recent decades, members of the International Tree Breeding and Conservation Program (Camcore) at North Carolina State University have established large, multi-site provenance trials for these pine species. The data collected in these trials provide valuable information about species and provenance choice for plantation establishment in many regions with different climates. Si...

  12. Transparent heavy minerals and magnetite geochemical composition of the Yangtze River sediments: Implication for provenance evolution of the Yangtze Delta

    Science.gov (United States)

    Yue, Wei; Jin, Bingfu; Zhao, Baocheng

    2018-02-01

    Heavy mineral and detrital magnetite geochemistry were analyzed to extract sediment provenance indexes from different reaches of the modern Yangtze River which were used to trace sediment source of the Yangtze Delta and to speculate its geomorphology change since the Pliocene. Our results show that diagnostic heavy minerals of the upper Yangtze sediment are characterized by clinopyroxene (12% on average) and magnetite (7% on average); the middle reaches by ilmenite, zircon and tourmaline; and the local small rivers by fluorite. Detrital magnetite composition of Ti, Mg, V and Cr is high in the upper Yangtze from the underlying basalt. These diagnostic indexes are then used in the Pliocene sediment core to extract provenance signal of different Yangtze reaches. Analysis of core sediment of the Yangtze Delta reveals that sediment provenance of the Pliocene was from local small rivers. Since the beginning of the Pleistocene, core sediments provenance was similar to that of the middle Yangtze tributaries. After 1.2 Ma, high content of pyroxene and magnetite grains that are rich in Ti, Mg, V, Cr imply sediment provenance signals from the upper Yangtze. Sediment provenance shift from short-distance sources to more distant sources indicates that the geomorphology of the Yangtze Delta region has undergone a great transformation since the Pliocene. This dramatic landform change is likely in response to continuous uplift of the Tibetan plateau and accelerated subsidence of the east China coast since the Pliocene.

  13. Osmotic adjustment in three-year-old seedlings of five provenances of maritime pine (Pinus pinaster) in response to drought.

    Science.gov (United States)

    Nguyen-Queyrens, Anne; Bouchet-Lannat, Fabien

    2003-04-01

    Three-year-old seedlings of five provenances of Pinus pinaster Ait. that differed in climatic conditions at their geographical origin were subjected to decreasing soil water availability. The degree of needle osmotic adjustment (OA) was estimated based on logarithmic plots of needle relative water content (RWC) against needle osmotic potential (Psi(pi)); i.e., lnRWC versus -ln(-Psi(pi)). There were significant differences among provenances in active OA (0.13 to 0.30 MPa for a decrease in RWC to 80%), and a clear negative relationship was found between OA and precipitation (650 to 1280 mm of mean annual rainfall) at the geographical origins of the provenances. A high osmoregulatory capacity contributes to the maintainance of positive turgor at low water potentials. We conclude that OA is one of the mechanisms underlying adaptation to drought in P. pinaster. Solute accumulation was about 2.3 times higher in the provenance from the driest site than in the provenance from the wettest site. The contribution of osmotic adjustment to differences in drought tolerance mechanisms among provenances is discussed.

  14. Proteotyping of Holm oak (Quercus ilex subsp. ballota) provenances through proteomic analysis of acorn flour.

    Science.gov (United States)

    Galván, José Valero; Fernández, Raquel González; Valledor, Luis; Cerrillo, Rafael Ma Navarro; Jorrin-Novo, Jesus V

    2014-01-01

    Proteomics has become a powerful tool to characterize biodiversity and natural variability in plant species, as well as to catalogue and establish phylogenetic relationships and distances among populations, provenances or ecotypes. In this chapter, we describe the standard proteomics workflow that we currently use in cataloguing Holm oak (Quercus ilex subsp. ballota [Desf.] Samp.) populations. Proteins are extracted from acorn flour or pollen by TCA/acetone or TCA/acetone-phenol methods, resolved by one- or two-dimensional gel electrophoresis, and gel images are captured and analyzed by appropriate software and statistical packages. Quantitative or qualitative variable bands or spots are subjected to MS analysis in order to identify them and correlate differences in the protein profile with the phenotypes or environmental conditions.

  15. Scale models: A proven cost-effective tool for outage planning

    Energy Technology Data Exchange (ETDEWEB)

    Lee, R. [Commonwealth Edison Co., Morris, IL (United States); Segroves, R. [Sargent & Lundy, Chicago, IL (United States)

    1995-03-01

    As generation costs for operating nuclear stations have risen, more nuclear utilities have initiated efforts to improve cost effectiveness. Nuclear plant owners are also being challenged with lower radiation exposure limits and new revised radiation protection related regulations (10 CFR 20), which places further stress on their budgets. As source term reduction activities continue to lower radiation fields, reducing the amount of time spent in radiation fields becomes one of the most cost-effective ways of reducing radiation exposure. An effective approach for minimizing time spent in radiation areas is to use a physical scale model for worker orientation planning and monitoring maintenance, modifications, and outage activities. To meet the challenge of continued reduction in the annual cumulative radiation exposures, new cost-effective tools are required. One field-tested and proven tool is the physical scale model.

  16. Assessment of biopsy-proven liver fibrosis by two-dimensional shear wave elastography

    DEFF Research Database (Denmark)

    Herrmann, Eva; de Lédinghen, Victor; Cassinotto, Christophe

    2018-01-01

    equipment were contacted to share their data. Retrospective statistical analysis used direct and paired receiver operating characteristic (ROC) and area under the ROC curve (AUROC) analysis accounting for random effects. RESULTS: Data on both 2D-SWE and liver biopsy was available in 1134 patients from 13......BACKGROUND AND AIMS: 2D shear wave elastography (2D-SWE) has proven to be efficient for the evaluation of liver fibrosis in small to moderate size clinical trials. We aimed at running a larger scale meta-analysis of individual data. METHODS: Centers which have worked with Aixplorer ultrasound...... sites, as well as on successful transient elastography (TE) in 665 patients. Most patients had chronic hepatitis C (HCV, n = 379), hepatitis B (HBV, n = 400) or non-alcoholic fatty liver disease (NAFLD, n = 156). AUROCs of 2D-SWE in patients with HCV, HBV and NAFLD were 86.3%, 90.6% and 85...

  17. Isolation and characterization of crude oil degrading bacteria from the Persian Gulf (Khorramshahr provenance).

    Science.gov (United States)

    Hassanshahian, Mehdi; Zeynalipour, Mohammad Saleh; Musa, Farzaneh Hosseinzadeh

    2014-05-15

    Fifteen crude oil degrading bacteria were isolated from oil contaminated sites in the Persian Gulf at Khorramshahr provenance. These bacteria were screened with two important factors such as growth rate on crude oil and hydrocarbon biodegradation, and then three strains were selected from 15 isolated strains for further study. One strain (PG-Z) that show the best crude oil biodegradation was selected between all isolates. Nucleotides sequencing of the gene encoding for 16S rRNA show that strain PG-Z belong to Corynebacterium variabile genus. This strain was efficient in degrading of crude oil. This strain was capable to degraded 82% of crude-oil after one week incubation in ONR7a medium. The PG-Z strain had high emulsification activity and biosurfactant production between all isolates. GC-MS analysis shows that C. variabile strain PG-Z can degrade different alkanes in crude oil. Copyright © 2014 Elsevier Ltd. All rights reserved.

  18. Cheminformatics and the Semantic Web: adding value with linked data and enhanced provenance

    Science.gov (United States)

    Frey, Jeremy G; Bird, Colin L

    2013-01-01

    Cheminformatics is evolving from being a field of study associated primarily with drug discovery into a discipline that embraces the distribution, management, access, and sharing of chemical data. The relationship with the related subject of bioinformatics is becoming stronger and better defined, owing to the influence of Semantic Web technologies, which enable researchers to integrate heterogeneous sources of chemical, biochemical, biological, and medical information. These developments depend on a range of factors: the principles of chemical identifiers and their role in relationships between chemical and biological entities; the importance of preserving provenance and properly curated metadata; and an understanding of the contribution that the Semantic Web can make at all stages of the research lifecycle. The movements toward open access, open source, and open collaboration all contribute to progress toward the goals of integration. PMID:24432050

  19. Presence of Psychodopygus wellcomei (Diptera: Psychodidae, a proven vector of Leishmania braziliensis braziliensis, in Ceara State

    Directory of Open Access Journals (Sweden)

    P. D. Ready

    1983-06-01

    Full Text Available Psychodopygus wellcomei, a proven vector of (muco-cutaneous leishmaniasis, has been found for the first time outside of the Amazon Basin, in Ceará State. Parasitological and entomological evidence suggests that the Leishmania braziliensis braziliensis/Ps. wellcomei zoonosis is widespread on the Brazilian Shield.Psychodopygus wellcomei, um vetor comprovado de leishmaniose (muco cutânea, foi pela primeira vez encontrado fora da Bacia Amazõnica, no Estado do Ceará. Evidência parasitológica e entomológica sugere que a Leishmania braziliensis braziliensis transmitida pelo Ps. wellcomei encontra-se largamente espalhada no "Maciço montanhoso do Brasil".

  20. Cheminformatics and the Semantic Web: adding value with linked data and enhanced provenance.

    Science.gov (United States)

    Frey, Jeremy G; Bird, Colin L

    2013-09-01

    Cheminformatics is evolving from being a field of study associated primarily with drug discovery into a discipline that embraces the distribution, management, access, and sharing of chemical data. The relationship with the related subject of bioinformatics is becoming stronger and better defined, owing to the influence of Semantic Web technologies, which enable researchers to integrate heterogeneous sources of chemical, biochemical, biological, and medical information. These developments depend on a range of factors: the principles of chemical identifiers and their role in relationships between chemical and biological entities; the importance of preserving provenance and properly curated metadata; and an understanding of the contribution that the Semantic Web can make at all stages of the research lifecycle. The movements toward open access, open source, and open collaboration all contribute to progress toward the goals of integration.

  1. Les officiers moyens d’une cité judiciaire provençale

    OpenAIRE

    Piétri, Valérie

    2013-01-01

    Draguignan fut, sous la domination des Angevins, une capitale judiciaire importante au sein de l'espace provençal. La ville conserva son caractère judiciaire après son rattachement au royaume de France, même si elle connut une redéfinition de son rôle au cours de l'époque moderne, qui s'appuya sur la création de nouvelles institutions et de nouveaux types d'offices propres à la monarchie française. La sénéchaussée constituait l’armature de cette nouvelle organisation autour de laquelle se dép...

  2. Ethiopian plants with proven and suspected molluscicidal activity: a new approach in plant evaluation.

    Science.gov (United States)

    Kloos, H; McCullough, F S

    1985-06-01

    Using available information on the toxicity, phytochemistry, ethnomedical uses and geographic distribution of plants, potentially suitable species are identified for the control of intermediate hosts of schistosomiasis in Ethiopia's lowlands where endod (Phytolacca dodecandra) is not available. Of 46 species with moderate to high snail-killing potency, 35 are indigenous to Ethiopia. They include 12 plant species with molluscicidal levels similar to those of endod, four of which are particularly suitable for snail control because of their low mammalian toxicity. Another 127 species indigenous to Ethiopia belong to genera with proven molluscicidal activity. The model for plant screening used here permits preliminary assessment of the suitability of plant resources in a given region or locality for snail control programs using existing data, without prior testing of local plants, making this approach appropriate for many developing countries.

  3. Are Local Filters Blind to Provenance? Ant Seed Predation Suppresses Exotic Plants More than Natives

    Science.gov (United States)

    Pearson, Dean E.; Icasatti, Nadia S.; Hierro, Jose L.; Bird, Benjamin J.

    2014-01-01

    The question of whether species’ origins influence invasion outcomes has been a point of substantial debate in invasion ecology. Theoretically, colonization outcomes can be predicted based on how species’ traits interact with community filters, a process presumably blind to species’ origins. Yet, exotic plant introductions commonly result in monospecific plant densities not commonly seen in native assemblages, suggesting that exotic species may respond to community filters differently than natives. Here, we tested whether exotic and native species differed in their responses to a local community filter by examining how ant seed predation affected recruitment of eighteen native and exotic plant species in central Argentina. Ant seed predation proved to be an important local filter that strongly suppressed plant recruitment, but ants suppressed exotic recruitment far more than natives (89% of exotic species vs. 22% of natives). Seed size predicted ant impacts on recruitment independent of origins, with ant preference for smaller seeds resulting in smaller seeded plant species being heavily suppressed. The disproportionate effects of provenance arose because exotics had generally smaller seeds than natives. Exotics also exhibited greater emergence and earlier peak emergence than natives in the absence of ants. However, when ants had access to seeds, these potential advantages of exotics were negated due to the filtering bias against exotics. The differences in traits we observed between exotics and natives suggest that higher-order introduction filters or regional processes preselected for certain exotic traits that then interacted with the local seed predation filter. Our results suggest that the interactions between local filters and species traits can predict invasion outcomes, but understanding the role of provenance will require quantifying filtering processes at multiple hierarchical scales and evaluating interactions between filters. PMID:25099535

  4. Microbial profile of the vitreous aspirates in culture proven exogenous endophthalmitis: A 10-year retrospective study

    Directory of Open Access Journals (Sweden)

    H Bhattacharjee

    2016-01-01

    Full Text Available Purpose: To describe the microbiological profile and clinical outcome in the eyes with culture-proven exogenous endophthalmitis. Methods: A retrospective analysis of 495 eyes diagnosed as exogenous endophthalmitis was performed over a period of 10 years. In all, aseptically collected aqueous and vitreous aspirates were cultured for bacteria and fungus using standard microbiological techniques. Gram-stain and KOH preparation of the specimens were also performed. The antibiotic susceptibility testing for bacterial isolates was performed by Kirby-Bauer disk diffusion method. The treatment was modified according to the antibiotic sensitivity profile. The final clinical ocular condition was divided into improved, stable or deteriorated. Results: Of 148 culture-proven endophthalmitis eyes, 137 (92.57% were referred from elsewhere, and 11 (7.43% belonged to our institute. Aetiologically, 76 (51.35% eyes were post-cataract surgery, 61 (41.22% were post-traumatic, 5 (3.38% eyes post-intravitreal anti-vascular endothelial growth factor injection, 5 associated with corneal diseases and 1 bleb-related endophthalmitis. In 31 (20.95% eyes, primary intravitreal antibiotics were given outside. The cultures revealed monomicrobial growth in 92.57% (n = 137 and polymicrobial growth in 7.43% (n = 11. Among the bacteria (n = 121, 81.76%, Pseudomonas species dominated overall (n = 32, 27.11% and post-operative (n = 26, 38.23% endophthalmitis group. Staphylococcus epidermidis (n = 14, 28% was prominent in post-traumatic endophthalmitis group. Ninety-two percent (n = 108 isolates of bacteria were sensitive to vancomycin. In 78 (52.7% eyes, the clinical ocular condition improved or remained stable while deteriorated in 51 (34.46%. Conclusion: A bacterial predominance was observed among causative organisms of exogenous endophthalmitis with Pseudomonas species being the most common. The appropriate surgical intervention improved or stabilised the visual acuity in nearly

  5. Are local filters blind to provenance? Ant seed predation suppresses exotic plants more than natives.

    Science.gov (United States)

    Pearson, Dean E; Icasatti, Nadia S; Hierro, Jose L; Bird, Benjamin J

    2014-01-01

    The question of whether species' origins influence invasion outcomes has been a point of substantial debate in invasion ecology. Theoretically, colonization outcomes can be predicted based on how species' traits interact with community filters, a process presumably blind to species' origins. Yet, exotic plant introductions commonly result in monospecific plant densities not commonly seen in native assemblages, suggesting that exotic species may respond to community filters differently than natives. Here, we tested whether exotic and native species differed in their responses to a local community filter by examining how ant seed predation affected recruitment of eighteen native and exotic plant species in central Argentina. Ant seed predation proved to be an important local filter that strongly suppressed plant recruitment, but ants suppressed exotic recruitment far more than natives (89% of exotic species vs. 22% of natives). Seed size predicted ant impacts on recruitment independent of origins, with ant preference for smaller seeds resulting in smaller seeded plant species being heavily suppressed. The disproportionate effects of provenance arose because exotics had generally smaller seeds than natives. Exotics also exhibited greater emergence and earlier peak emergence than natives in the absence of ants. However, when ants had access to seeds, these potential advantages of exotics were negated due to the filtering bias against exotics. The differences in traits we observed between exotics and natives suggest that higher-order introduction filters or regional processes preselected for certain exotic traits that then interacted with the local seed predation filter. Our results suggest that the interactions between local filters and species traits can predict invasion outcomes, but understanding the role of provenance will require quantifying filtering processes at multiple hierarchical scales and evaluating interactions between filters.

  6. Are local filters blind to provenance? Ant seed predation suppresses exotic plants more than natives.

    Directory of Open Access Journals (Sweden)

    Dean E Pearson

    Full Text Available The question of whether species' origins influence invasion outcomes has been a point of substantial debate in invasion ecology. Theoretically, colonization outcomes can be predicted based on how species' traits interact with community filters, a process presumably blind to species' origins. Yet, exotic plant introductions commonly result in monospecific plant densities not commonly seen in native assemblages, suggesting that exotic species may respond to community filters differently than natives. Here, we tested whether exotic and native species differed in their responses to a local community filter by examining how ant seed predation affected recruitment of eighteen native and exotic plant species in central Argentina. Ant seed predation proved to be an important local filter that strongly suppressed plant recruitment, but ants suppressed exotic recruitment far more than natives (89% of exotic species vs. 22% of natives. Seed size predicted ant impacts on recruitment independent of origins, with ant preference for smaller seeds resulting in smaller seeded plant species being heavily suppressed. The disproportionate effects of provenance arose because exotics had generally smaller seeds than natives. Exotics also exhibited greater emergence and earlier peak emergence than natives in the absence of ants. However, when ants had access to seeds, these potential advantages of exotics were negated due to the filtering bias against exotics. The differences in traits we observed between exotics and natives suggest that higher-order introduction filters or regional processes preselected for certain exotic traits that then interacted with the local seed predation filter. Our results suggest that the interactions between local filters and species traits can predict invasion outcomes, but understanding the role of provenance will require quantifying filtering processes at multiple hierarchical scales and evaluating interactions between filters.

  7. Detrital zircons from the Hronicum Carboniferous-Permian sandstones (Western Carpathians, Slovakia): depositional age and provenance

    Science.gov (United States)

    Vozárová, Anna; Larionov, Alexander; Šarinová, Katarína; Vďačný, Marek; Lepekhina, Elena; Vozár, Jozef; Lvov, Pavel

    2017-11-01

    For the assessment of depositional age and provenance of the Hronicum Unit Pennsylvanian to Permian siliciclastic sediments, SIMS (SHRIMP) U-Pb analyses have been carried out on detrital zircons. To constrain the presumed provenance of the Hronicum Unit sediments five samples have been taken from two lithostratigraphic units, the Nižná Boca and the Malužiná formations. The detrital-zircon age spectrum demonstrates two prominent populations, the first, Late Pennsylvanian-Early Cisuralian (288-309 Ma) and the second, Famennian—Tournaisian (345-371 Ma). The probability density age peak at 297 Ma permits to estimate the maximum sedimentation age of the Nižná Boca Fm. to younger than Asselian and the beginning of the Malužiná Formation sedimentation has been assessed at least in Sakmarian. The sedimentation persisted, with the exception of a short break in the Wordian/Capitanian, through the Lopingian. Smaller zircon age clusters range within 446-541 Ma, with a dominance of the Cambrian detrital zircons (491-541 Ma). The Precambrian time-span is dominated by the two groups of detrital zircons; Ediacaran in the range of 545-612 Ma and Paleoproterozoic-Neoarchean ranging from 1.8 to 2.8 Ga. The documented zircon ages reflect derivation of the Hronicum sediments from the Variscan Western Carpathian crystalline basement, the Late Devonian/Early Mississippian magmatic arc. These data support close relations of the presumed Hronicum basement with the Armorican terranes and derivation from the Cadomian Belt, associated with the West African Craton during Neoproterozoic and Cambrian time.

  8. Provenance effect on carbon assimilation, photochemistry and leaf morphology in Mediterranean Cistus species under chilling stress.

    Science.gov (United States)

    Puglielli, G; Cuevas Román, F J; Catoni, R; Moreno Rojas, J M; Gratani, L; Varone, L

    2017-07-01

    The potential resilience of shrub species to environmental change deserves attention in those areas threatened by climate change, such as the Mediterranean Basin. We asked if leaves produced under different climate conditions through the winter season to spring can highlight the leaf traits involved in determining potential resilience of three Cistus spp. to changing environmental conditions and to what extent intraspecific differences affect such a response. We analysed carbon assimilation, maximum quantum efficiency of PSII photochemistry (F v /F m ) and leaf morphological control of the photosynthetic process in leaves formed through the winter season into spring in C. creticus subsp. eriocephalus (CE), C. salvifolius (CS) and C. monspeliensis (CM) grown from seed of different provenances under common garden conditions. Intraspecific differences were found in F v /F m for CE and CS. Carbon assimilation-related parameters were not affected by provenance. Moreover, our analysis highlighted that the functional relationships investigated can follow seasonal changes and revealed patterns originating from species-specific differences in LMA arising during the favourable period. Cistus spp. have great ability to modify the structure and function of their leaves in the mid-term in order to cope with changing environmental conditions. The F v /F m response to chilling reveals that susceptibility to photoinhibition is a trait under selection in Cistus species. Concerning carbon assimilation, differing ability to control stomatal opening was highlighted between species. Moreover, seasonal changes of the functional relationships investigated can have predictable consequences on species leaf turnover strategies. © 2017 German Botanical Society and The Royal Botanical Society of the Netherlands.

  9. Soil magnetic susceptibility mapping as a pollution and provenance tool: an example from southern New Zealand

    Science.gov (United States)

    Martin, A. P.; Ohneiser, C.; Turnbull, R. E.; Strong, D. T.; Demler, S.

    2018-02-01

    The presence or absence, degree and variation of heavy metal contamination in New Zealand soils is a matter of ongoing debate as it affects soil quality, agriculture and human health. In many instances, however, the soil heavy metal concentration data do not exist to answer these questions and the debate is ongoing. To address this, magnetic susceptibility (a common proxy for heavy metal contamination) values were measured in topsoil (0-30 cm) and subsoil (50-70 cm) at grid sites spaced at 8 km intervals across ca. 20 000 km2 of southern New Zealand. Samples were measured for both mass- and volume-specific magnetic susceptibility, with results being strongly, positively correlated. Three different methods of determining anomalies were applied to the data including the topsoil-subsoil difference method, Tukey boxplot method and geoaccumulation index method, with each method filtering out progressively more anomalies. Additional soil magnetic (hysteresis, isothermal remanence and thermomagnetic) measurements were made on a select subset of samples from anomalous sites. Magnetite is the dominant remanence carrying mineral, and magnetic susceptibility is governed by that minerals concentration in soils, rather than mineral type. All except two anomalous sites have a dominant geogenic source (cf. anthropogenic). By proxy, heavy metal contamination in southern New Zealand soils is minimal, making them relatively pristine. The provenance of the magnetic minerals in the anomalous sites can be traced back to likely sources in outcrops of igneous rocks within the same catchment, terrane or rock type: a distance of <100 km but frequently <1 km. Soil provenance is a key step when mapping element or isotopic distribution, vectoring to mineralization or studying soil for agricultural suitability, water quality or environmental regulation. Measuring soil magnetic susceptibility is a useful, quick and inexpensive tool that usefully supplements soil geochemical data.

  10. Local adaptations and climate change: converging sensitivity of bud break in black spruce provenances

    Science.gov (United States)

    Rossi, Sergio

    2015-07-01

    Species with transcontinental distribution or spread over wide geographical regions develop populations with growth traits genetically adapted to the local climate. The aim of this study was to investigate the ecotypic sensitivity of bud break, a strong adaptive trait, to a changing environment. Six phenological phases of bud break were monitored daily on black spruce [ Picea mariana (Mill.) BSP] seedlings submitted to different temperatures (12, 16 and 20 °C) and photoperiods (14, 18 and 22 h). Six provenances were tested in growth chambers, produced from seeds collected along the whole latitudinal range of the closed boreal forest in Quebec, Canada. Bud break lasted 13.3 days on average and occurred earlier in seedlings from colder sites. The annual temperature of the sites suitably tracked the clinal variation among ecotypes, providing a clear biological explanation for the environmental signal driving the adaptive divergence of populations to the local climate. Increasing temperature induced an earlier bud break according to a non-linear pattern with greater advancements observed between 12 and 16 °C. Photoperiod was significant, but sensitivity analysis indicated that its effect on bud break was marginal with respect to temperature. No interaction of provenance × treatment was observed, demonstrating an ecotypic convergence of the responses to both factors. Changes in the growing conditions could substantially modify the synchronization between bud phenology and climate, thus exposing the developing meristems of black spruce to frost damage. However, similar advancements of bud break could be expected in the different ecotypes subjected to warmer temperatures or longer day lengths.

  11. Holocene Provenance Identification and Climate Control of Indus Basin By Using Radiogenic Techniques and Clay Mineralogy

    Directory of Open Access Journals (Sweden)

    ANWAR ALIZAI

    2011-12-01

    Full Text Available Two commonly used isotopic methods (Zircon U-Pb dating and K-feldspar Pb dating were employed for the Holocene provenance identification within the Indus basin. Zircon grains from the upper Indus are generally younger than 200 Ma in contrast with the eastern tributaries, which show varying inputs from Greater and Lesser Himalayan sources. The Sutlej river is very rich in Lesser Himalayan-sourced sediments, while the Chenab is mostly eroded from the Greater Himalaya. Grains younger than 200 Ma in the sands of the Thar desert indicate preferential aeolian transport from the Indus lower reaches. K-feldspar Pb dating of silt and sand-sized grains from the modern Sutlej and Chenab rivers show a clear Himalayan provenance, contrasting with grains from the Indus Suture Zone, but are overlapping with Karakoram compositions. The desert dunes commonly show 207Pb/204Pb and 206Pb/204Pb values that are much higher than those seen in the rivers, most consistent with erosion from Nanga Parbat. This implies at least some origin from the trunk Indus, probably reworked by summer monsoon winds from the SW, a hypothesis supported by U-Pb zircon dating. Further, data collected from Holocene and Pleistocene buried sands on the western edge of the Thar desert were sourced from Himalayan rivers before and at 6–8 ka, but after that time the proportion of high isotopic ratio grains rose, indicating increased contribution from the Thar Desert dunes prior to ~4.5 ka when flow ceased entirely. Clay mineral assemblages are dominated by smectite and illite, with minor chlorite and kaolinite. Deltaic sediments integrate clay minerals across the basin with increased smectite input between 13 and 7.5 ka, indicating stronger chemical weathering when the summer monsoon intensified and correlating with similar trends in peninsular India.

  12. Specimen Provenance Testing Identifies Contamination That Affects Molecular Prognostic Assay Results in Prostate Cancer Biopsy Specimens.

    Science.gov (United States)

    Wojno, Lathem; Minutella, Caitlyn; Moylan, Donald; Bush, Arla; Wojno, Kirk

    2018-02-21

    To determine if tissue contamination in histologic specimens can significantly affect the results of prognostic molecular markers that are routinely used as confirmatory tests to safely assign appropriate candidates to prostate cancer active surveillance protocols. This study evaluates 2,134 cases from a single, large urology practice that were successfully tested for DNA specimen provenance verification using short tandem repeat analysis for the presence of a significant level of contaminating DNA. After removal of the contamination, five of the samples were retested, and the results of the molecular diagnostic test were compared. 49 of the 2,134 cases (2.3%) sent for DNA provenance analysis were found to possess significant levels of contamination. Of these 49 cases, seven of them were resent for a repeat molecular diagnostic test after being decontaminated. Five of these prostate cancer specimens had sufficient tissue and RNA to give a more accurate cell cycle progression (CCP) score. The average absolute change in these patient's CCP scores was 0.48, with a low of a 0.1-unit and a high of a 1.0-unit difference. These changes in CCP scores are significant enough to cause meaningful alterations in a patient's calculated 10-year mortality rate, as defined by their combined risk score (CRS). DNA contamination in unstained tissue sections sent for prognostic prostate cancer molecular diagnostic testing occurs on 2.3% of cases, and can be of a magnitude that affects the results and subsequent clinical decision of appropriateness for active surveillance. Copyright © 2018. Published by Elsevier Inc.

  13. Snow precipitation at four ice core sites in East Antarctica: provenance, seasonality and blocking factors

    Science.gov (United States)

    Scarchilli, Claudio; Frezzotti, Massimo; Ruti, Paolo Michele

    2011-11-01

    Snow precipitation is the primary mass input to the Antarctic ice sheet and is one of the most direct climatic indicators, with important implications for paleoclimatic reconstruction from ice cores. Provenance of precipitation and the dynamic conditions that force these precipitation events at four deep ice core sites (Dome C, Law Dome, Talos Dome, and Taylor Dome) in East Antarctica were analysed with air mass back trajectories calculated using the Lagrangian model and the mean composite data for precipitation, geopotential height and wind speed field data from the European Centre for Medium Range Weather Forecast from 1980 to 2001. On an annual basis, back trajectories showed that the Atlantic-Indian and Ross-Pacific Oceans were the main provenances of precipitation in Wilkes Land (80%) and Victoria Land (40%), respectively, whereas the greatest influence of the ice sheet was on the interior near the Vostok site (80%) and in the Southwest Ross Sea (50%), an effect that decreased towards the coast and along the Antarctic slope. Victoria Land received snowfall atypically with respect to other Antarctica areas in terms of pathway (eastern instead of western), seasonality (summer instead of winter) and velocity (old air age). Geopotential height patterns at 500 hPa at low (>10 days) and high (2-6 days) frequencies during snowfall cycles at two core sites showed large positive anomalies at low frequencies developing in the Tasman Sea-Eastern Indian Ocean at higher latitudes (60-70°S) than normal. This could be considered part of an atmospheric blocking event, with transient eddies acting to decelerate westerlies in a split region area and accelerate the flow on the flanks of the low-frequency positive anomalies.

  14. Cochrane meta-analysis: teicoplanin versus vancomycin for proven or suspected infection

    Directory of Open Access Journals (Sweden)

    Diogo Diniz Gomes Bugano

    2011-09-01

    Full Text Available Objective: To compare efficacy and safety of vancomycin versusteicoplanin in patients with proven or suspected infection.Methods: Data Sources: Cochrane Renal Group’s SpecializedRegister, CENTRAL, MEDLINE, EMBASE, nephrology textbooksand review articles. Inclusion criteria: Randomized controlled trialsin any language comparing teicoplanin to vancomycin for patientswith proven or suspected infection. Data extraction: Two authorsindependently evaluated methodological quality and extracted data.Study investigators were contacted for unpublished information. Arandom effect model was used to estimate the pooled risk ratio (RRwith 95% confidence interval (CI. Results: A total of 24 studies (2,610patients were included. The drugs had similar rates of clinical cure(RR: 1.03; 95%CI: 0.98-1.08, microbiological cure (RR: 0.98; 95%CI:0.93-1.03 and mortality (RR: 1.02; 95%CI: 0.79-1.30. Teicoplaninhad lower rates of skin rash (RR: 0.57; 95%CI: 0.35-0.92, red mansyndrome (RR: 0.21; 95%CI: 0.08-0.59 and total adverse events (RR:0.73; 95%CI: 0.53-1.00. Teicoplanin reduced the risk of nephrotoxicity(RR: 0.66; 95%CI: 0.48-0.90. This effect was consistent for patientsreceiving aminoglycosides (RR: 0.51; 95%CI: 0.30-0.88 or havingvancomycin doses corrected by serum levels (RR: 0.22; 95%CI:0.10-0.52. There were no cases of acute kidney injury needingdialysis. Limitations: Studies lacked a standardized definition fornephrotoxicity. Conclusions: Teicoplanin and vancomycin are equallyeffective; however the incidence of nephrotoxicity and other adverseevents was lower with teicoplanin. It may be reasonable to considerteicoplanin for patients at higher risk for acute kidney injury.

  15. Local adaptations and climate change: converging sensitivity of bud break in black spruce provenances.

    Science.gov (United States)

    Rossi, Sergio

    2015-07-01

    Species with transcontinental distribution or spread over wide geographical regions develop populations with growth traits genetically adapted to the local climate. The aim of this study was to investigate the ecotypic sensitivity of bud break, a strong adaptive trait, to a changing environment. Six phenological phases of bud break were monitored daily on black spruce [Picea mariana (Mill.) BSP] seedlings submitted to different temperatures (12, 16 and 20 °C) and photoperiods (14, 18 and 22 h). Six provenances were tested in growth chambers, produced from seeds collected along the whole latitudinal range of the closed boreal forest in Quebec, Canada. Bud break lasted 13.3 days on average and occurred earlier in seedlings from colder sites. The annual temperature of the sites suitably tracked the clinal variation among ecotypes, providing a clear biological explanation for the environmental signal driving the adaptive divergence of populations to the local climate. Increasing temperature induced an earlier bud break according to a non-linear pattern with greater advancements observed between 12 and 16 °C. Photoperiod was significant, but sensitivity analysis indicated that its effect on bud break was marginal with respect to temperature. No interaction of provenance × treatment was observed, demonstrating an ecotypic convergence of the responses to both factors. Changes in the growing conditions could substantially modify the synchronization between bud phenology and climate, thus exposing the developing meristems of black spruce to frost damage. However, similar advancements of bud break could be expected in the different ecotypes subjected to warmer temperatures or longer day lengths.

  16. Investigating the provenance of thermal groundwater using compositional multivariate statistical analysis: a hydrogeochemical study from Ireland

    Science.gov (United States)

    Blake, Sarah; Henry, Tiernan; Murray, John; Flood, Rory; Muller, Mark R.; Jones, Alan G.; Rath, Volker

    2016-04-01

    The geothermal energy of thermal groundwater is currently being exploited for district-scale heating in many locations world-wide. The chemical compositions of these thermal waters reflect the provenance and hydrothermal circulation patterns of the groundwater, which are controlled by recharge, rock type and geological structure. Exploring the provenance of these waters using multivariate statistical analysis (MSA) techniques increases our understanding of the hydrothermal circulation systems, and provides a reliable tool for assessing these resources. Hydrochemical data from thermal springs situated in the Carboniferous Dublin Basin in east-central Ireland were explored using MSA, including hierarchical cluster analysis (HCA) and principal component analysis (PCA), to investigate the source aquifers of the thermal groundwaters. To take into account the compositional nature of the hydrochemical data, compositional data analysis (CoDa) techniques were used to process the data prior to the MSA. The results of the MSA were examined alongside detailed time-lapse temperature measurements from several of the springs, and indicate the influence of three important hydrogeological processes on the hydrochemistry of the thermal waters: 1) increased salinity due to evaporite dissolution and increased water-rock-interaction; 2) dissolution of carbonates; and 3) dissolution of metal sulfides and oxides associated with mineral deposits. The use of MSA within the CoDa framework identified subtle temporal variations in the hydrochemistry of the thermal springs, which could not be identified with more traditional graphing methods (e.g., Piper diagrams), or with a standard statistical approach. The MSA was successful in distinguishing different geological settings and different annual behaviours within the group of springs. This study demonstrates the usefulness of the application of MSA within the CoDa framework in order to better understand the underlying controlling processes

  17. Isotopic and magnetic provenance characterization of distal IRD in the Galicia Interior Basin (NW Iberia)

    Science.gov (United States)

    Plaza-Morlote, Maider; Rey, Daniel; Francisco Santos, Jose; Ribeiro, Sara; Bernabeu, Ana; Mohamed, Kais; Heslop, David; Rubio, Belén; Martins, Virginia

    2016-04-01

    The sediments of the Galicia Interior Basin in NW Iberia Margin are of particular palaeoclimatic interest as they are located at the boundary where the climatic oscillations of the glacial interval were interrupted by extreme events such as Heinrich events. These events are well characterized in Northern North Atlantic areas, but little is known about their occurrence beyond the Ruddiman belt. This study presents a combined environmagnetic and geochemical approach to the provenance and characterization of distal ice-rafted detritus (IRD) that occurred during the last glacial period in core CI12PC3 from the Galicia Interior Basin. The last six Heinrich Layers were identified by their magneto-mineralogical and geochemical properties. Their Sr and Nd isotopic signatures indicated that the Laurentide Ice Sheet was the major source for HL1, HL2, HL4 and HL5. However, the European ice sheets also influenced the initial development stages of HL1, HL2, HL4. HL3, HL6 and partially HL1, HL2 and HL4 were influenced by more juvenile provinces, such as Iceland/Faroes sheets and/or by the Fram Strait/East Greenland nearby areas. Separate provenance analyses of the coarse and fine fractions in the studied Heinrich Layers also indicated that IRDs and glacial flour sources might not always be the same. Our results shed unequivocal evidence that Canadian-sourced distal IRD are preceded by European-sourced IRD, at least from the H4. In our view, LIS and EIS instabilities registered in the Iberian Margin respond to the same climate forcing at different velocities.

  18. Provenance shift in Cambrian mid-Baltica: detrital zircon chronology of Ediacaran–Cambrian sandstones in Estonia

    Directory of Open Access Journals (Sweden)

    Yukio Isozaki

    2014-12-01

    Full Text Available In order to clarify the tectono-sedimentary history of Paleozoic Baltica, age spectra of detrital zircon grains from the Ediacaran (Kotlin Regional Stage and Lower Cambrian sandstones (lowermost Lontova and Lükati formations in western Estonia in central Baltica were analyzed by LA-ICPMS. The abundant occurrence of Archean to Mesoproterozoic (2800–1000 Ma zircon grains was confirmed in all samples. The new data provided the following information on the provenance of siliciclastic material as well as a major change in the sedimentary regime of the Paleo-Baltic basin during the Early Cambrian: (1 the Ediacaran–Lower Cambrian Paleo-Baltic basin received abundant terrigenous clastics from the core of Baltica underlain by the Archean–Mesoproterozoic crystalline crust, (2 the exposed surface area of the 1600 Ma Rapakivi granites apparently was more extensive during the Ediacaran–Early Cambrian than at present, (3 a major re-organization of the basin geometry occurred in the middle Early Cambrian (ca 530–515 Ma in central Baltica, inducing a change in the sediment supply system, (4 in contrast to the total absence of Neoproterozoic detrital zircon grains before the middle Early Cambrian, their sudden appearance at this time, together with consistent occurrence at least until the mid-Devonian, suggests a significant uplift event located in southeast Baltica and/or in a more easterly land domain (e.g., in Sarmatia, (5 possible sources for the Neoproterozoic zircon grains include the peripheral mobile belts with pan-African signatures around Baltica, e.g., the so-called Gondwanan fragments along the Tornquist margin to the southwest and the Timanian belt along the northeastern margin.

  19. Provenance analysis of Roman stone artefacts from sedimentary rocks from the archaeological site near Mošnje, NW Slovenia

    Directory of Open Access Journals (Sweden)

    Snježana Miletić

    2016-08-01

    Full Text Available This study deals with the macroscopic and microfacies characterisation of Roman stone artefacts excavated in 2006 from a Roman villa rustica near Mošnje (NW Slovenia with the aim of defiing their provenance. A total of 28 representative fids (querns, mortars, whetstones, tooled and rounded stones, a fragment of stone slab, mosaic tesserae and two architectural elements - one with a relief made of clastic and carbonate sedimentary rocks were examined. Comparison was made with rock samples taken from quarries and gravel bars close to the archaeological site, as well as from larger distance to the site. The majority of artefact sampled is composed of Upper Palaeozoic quartz sandstones, which are found as pebbles in gravel bars close to the archaeological site; while 2 samples were from Quaternary coarse grained clastic rocks which can be found in local glacio-flvial sediments. Other fids were made of four different Mesozoic shallow-water limestones which outcrop in different areas of Central and SW Slovenia. The nearest Lower Jurassic biopelmicritic limestones are found at the western periphery of Ljubljana in Podutik. Cretaceous miliolid limestones and biocalcarenitic limestones with rudists are common in the successions of the Dinaric Carbonate Platform in SW Slovenia (for example, on the Trieste-Komen Plateau, NE Italy and SW Croatia. This indicates that the limestones for architectural elements, stone mortars and tesserae were brought to Mošnje from distant locations. Smaller stone tools are likely to have been made at the location of the archaeological site from material gathered locally, mostly pebbles from clastic rocks, which were accessible and suitable for tooling.

  20. Provenance, age, and environment of mid-Wisconsinan slackwater lake sediment in the St. Louis Metro East area, USA

    Science.gov (United States)

    Curry, B. Brandon; Grimley, D.A.

    2006-01-01

    Valleys tributary to the Mississippi River contain fossiliferous slackwater lake sediment (Equality Formation) deposited in response to aggradation of the Mississippi River valley during the last glaciation. In the St. Louis Metro East area, the lower part of the Equality Formation is primarily laminated, fossiliferous silt and clay deposited from about 44,150 to 24,310 14C yr B.P. The upper Equality Formation is primarily very fine sand to silt deposited from about 21,200 to 17,000 14C yr B.P. Among the four cores that sample this succession in the St. Louis Metro East area, core MNK-3 (38.64EN, 90.01EW) was selected for detailed study. Three sources are distinguished by the following characteristics: (1) gray smectite-quartz-Se-rich, feldspar-poor material of the Des Moines, Wadena, and James lobes; (2) reddish brown kaolinite-Cu-Fe-rich sediment of the Superior and Rainy lobes; and (3) brown illite-dolomite-Sr-rich sediment of the Lake Michigan and Green Bay lobes. The earliest sediments (44,150 to 41,700 14C yr B.P.) were derived from the central and western provenances and are chronocorrelative with the lower Roxana Silt. A hiatus occurred from about 41,700 to 29,030 14C yr B.P. when much of the middle Roxana Silt (Meadow Member) was deposited on adjacent uplands. The youngest sediment includes evidence of heightened activity of the Superior Lobe at about 29,000 14C yr B.P., the Lake Michigan and Green Bay lobes from about 25,000 to 24,000 14C yr B.P., and the Wadena-Des Moines-James lobes at about 21,000 14C yr B.P. ?? 2005 Society. Published by University of Washington. All rights reserved.

  1. Plant Growth Variation At Combined Progeny And Provenance Of 5-Year-Old Intsia Bijuga (Colebr. O.Kuntze In Sobang, Banten

    Directory of Open Access Journals (Sweden)

    Hamdan Adma Adinugraha

    2014-12-01

    Full Text Available This study was conducted to evaluate plant growth of Intsia bijuga at 5 years old in Sobang, Banten for supplying good genetic material in the future. Establishment of the trial was conducted in 2007 using Randomized Complete Block Design (RCBD that consisted of 6 blocks, 100 families nested in 10 provenances, 4 treeplot for each family with a spacing of 4 x4 m. Measurements were taken periodically every year on the survival percentage, total height and stem diameter at the breast height or dbh. At the age of 5 years showed that the significant differences among provenance in survival percentage that ranged from 41.61 to 65.11 %,  average of plant height were 1.04 to 2.82 m and dbh 1.24 to 1.59 cm. The growth variation families also showed significant differences in height and diameter. The survival rate ranged from 12.5-91.67 %, average plant height were 0.52-2.55 m and dbh 0.90-2.44 cm. Individual tree heritability estimate for height was height (0.344 while that of diameter was moderate (0.259. Family heritabilities for height and diameter was considered moderate, namely 0.573 and 0.491 respectively. Genetic correlation between height and diameter growth was positive and high (0.834.

  2. Survival and growth patterns of white spruce (Picea glauca [Moench] Voss) rangewide provenances and their implications for climate change adaptation.

    Science.gov (United States)

    Lu, Pengxin; Parker, William H; Cherry, Marilyn; Colombo, Steve; Parker, William C; Man, Rongzhou; Roubal, Ngaire

    2014-06-01

    Intraspecific assisted migration (ISAM) through seed transfer during artificial forest regeneration has been suggested as an adaptation strategy to enhance forest resilience and productivity under future climate. In this study, we assessed the risks and benefits of ISAM in white spruce based on long-term and multilocation, rangewide provenance test data. Our results indicate that the adaptive capacity and growth potential of white spruce varied considerably among 245 range-wide provenances sampled across North America; however, the results revealed that local populations could be outperformed by nonlocal ones. Provenances originating from south-central Ontario and southwestern Québec, Canada, close to the southern edge of the species' natural distribution, demonstrated superior growth in more northerly environments compared with local populations and performed much better than populations from western Canada and Alaska, United States. During the 19-28 years between planting and measurement, the southern provenances have not been more susceptible to freezing damage compared with local populations, indicating they have the potential to be used now for the reforestation of more northerly planting sites; based on changing temperature, these seed sources potentially could maintain or increase white spruce productivity at or above historical levels at northern sites. A universal response function (URF), which uses climatic variables to predict provenance performance across field trials, indicated a relatively weak relationship between provenance performance and the climate at provenance origin. Consequently, the URF from this study did not provide information useful to ISAM. The ecological and economic importance of conserving white spruce genetic resources in south-central Ontario and southwestern Québec for use in ISAM is discussed.

  3. On the influence of provenance to soil quality enhanced stress reaction of young beech trees to summer drought.

    Science.gov (United States)

    Buhk, Constanze; Kämmer, Marcel; Beierkuhnlein, Carl; Jentsch, Anke; Kreyling, Jürgen; Jungkunst, Hermann F

    2016-11-01

    Climate projections propose that drought stress will become challenging for establishing trees. The magnitude of stress is dependent on tree species, provenance, and most likely also highly influenced by soil quality. European Beech (Fagus sylvatica) is of major ecological and economical importance in Central European forests. The species has an especially wide physiological and ecological amplitude enabling growth under various soil conditions within its distribution area in Central Europe. We studied the effects of extreme drought on beech saplings (second year) of four climatically distinct provenances growing on different soils (sandy loam and loamy sand) in a full factorial pot experiment. Foliar δ(13)C, δ(15)N, C, and N as well as above- and belowground growth parameters served as measures for stress level and plant growth. Low-quality soil enhanced the effect of drought compared with qualitatively better soil for the above- and belowground growth parameters, but foliar δ(13)C values revealed that plant stress was still remarkable in loamy soil. For beeches of one provenance, negative sandy soil effects were clearly smaller than for the others, whereas for another provenance drought effects in sandy soil were sometimes fatal. Foliar δ(15)N was correlated with plant size during the experiment. Plasticity of beech provenances in their reaction to drought versus control conditions varied clearly. Although a general trend of declining growth under control or drought conditions in sandy soil was found compared to loamy soil, the magnitude of the effect of soil quality was highly provenance specific. Provenances seemed to show adaptations not only to drought but also to soil quality. Accordingly, scientists should integrate information about climatic pre-adaptation and soil quality within the home range of populations for species distribution modeling and foresters should evaluate soil quality and climatic parameters when choosing donor populations for

  4. Variability of needle structure in Siberian stone pine in provenance plantations

    Directory of Open Access Journals (Sweden)

    O. Bender

    2013-12-01

    Full Text Available Siberian stone pine (Pinus sibirica Du Tour is one of the most common trees in Siberia. Its natural range is from the Ural Mountains to the Aldan river and from the Arctic Circle to northern Mongolia. The climate in natural Siberian stone pine sites influences the whole plant organism, particularly its needle structure, and the response to thisoccurs at specific morphological and anatomical levels. The genotypical and environmental effects on needle structure in different Siberianstone pine ecotypes are very little known. One effective way to examine and to separate genotypical effects from environmental ones is byusing a common garden experiment. The purpose is to analyze morphological and anatomical needle variability in Siberian stone pinemarginal populations that have been grown in provenance plantations in southern West Siberia, Russia. The needle samples were collectedin the provenance plantation located 30 km south of Tomsk (the southeastern West Siberian Plain, southern limit of the taiga zone,optimum site conditions for Siberian stone pine. We investigated the grafts of mother trees taken from natural sites. Four ecotypeswere selected for the study. Three ecotypes originated from northern (Urengoy, western (Neviyansk, and eastern (Severobaikalskmarginal populations. The fourth, the Tomsk ecotype, was a local control. The local Tomsk ecotype grows on a site where natural conditions are worse due to reduction of mean annual temperature and increase of the humid factor northward, humidity reduction eastward and its rise westward. Variability of 10 needle morphologicaland anatomical characteristics was studied. The northern ecotype had smaller needle length (28%, leaf cross-section area (21%, mesophyll area (29%, mesophyll cell size (27%, and conducting bundle area (16% but the number of stomata per unit leaf area increased by 16% over the local Tomsk ecotype. The resin canal area, epidermal andhypodermal

  5. Sr - an element shows the way - Applications of Sr isotopes for provenance, tracing and migration (Invited)

    Science.gov (United States)

    Prohaska, T.; Irrgeher, J.; Zitek, A.; Teschler Nicola, M.

    2010-12-01

    Strontium - named after the small Scottish town Strontian - as such is an element with little popularity. Firstly described by Martin Heinrich Klaproth in 1798, the metal is used in metallurgy to some extent whereas its compounds are interesting in glass industries, electronics and pyrotechnics. The element has chemical similarity to Ca and makes up 1/60 of the earth’s amount of the latter. Nonetheless, it is its isotopic composition which makes Sr so interesting for a large number of scientists. The natural composition of the four naturally occurring isotopes (84Sr, 86Sr 87Sr and 88Sr) varies in nature due to the radioactive decay of 87Rb to 87Sr. Thus, it was early recognized as geochronometer especially in Ca rich matrices. With increasing precision of applied methodology, the natural variation of the 87Sr/86Sr isotope ratio (analyzed at first mainly by thermal ionization mass spectrometry (TIMS)) became more and more popular in provenance studies. The natural variation of the ratio is mainly determined by the geological age and the original composition of the rock and can be used therefore as fingerprint of the local geology. The ratio is transferred with no significant fractionation via the water into plants and finally via the food chain into animal and human tissues (especially bones and teeth). As the element is chemically similar to Ca, it appears in most matrices. The use for provenance studies is supported by the fact that the long half life (4.8 x 1010 years) does not lead to an alteration during the time scales which are investigated (from recent samples to human or animal skeletal remains which date back up to 30.000 BC). The uniqueness of the system besides the natural variation is defined by the ubiquity in nature and the relatively high (and thus measurable) elemental concentration in most tissues. It was finally the advent of multiple collector inductively coupled plasma mass spectrometry (MC-ICP-MS) which augmented the number of applications

  6. Clinical observations associated with proven and unproven cases in the ESCRS study of prophylaxis of postoperative endophthalmitis after cataract surgery.

    LENUS (Irish Health Repository)

    Barry, Peter

    2012-02-01

    PURPOSE: To describe cases of postoperative endophthalmitis in the European Society of Cataract & Refractive Surgeons (ESCRS) study of the prophylaxis of endophthalmitis, compare characteristics of unproven cases and cases proven by culture or polymerase chain reaction, and compare the characteristics with those in other reported series. SETTING: Twenty-four ophthalmology units in Austria, Belgium, Germany, Italy, Poland, Portugal, Spain, Turkey, and the United Kingdom. METHODS: Univariable and multivariable logistic regression models were used to analyze data for statistical association of signs and symptoms in cases with proven or unproven endophthalmitis. Specific data describing characteristics of the cases were compared between the 2 types of cases. RESULTS: Data from 29 endophthalmitis cases were analyzed. Swollen lids and pain were statistically associated with proven cases of endophthalmitis on univariable regression analysis. Multivariable analysis indicated that swollen lids and an opaque vitreous were associated with proven cases. Five cases of endophthalmitis occurred in the cefuroxime-treated groups. No case of streptococcal infection occurred in the cefuroxime-treated groups. However, cases of infection due to streptococci showed striking differences in visual acuity and were associated with earlier onset. Characteristics in the 29 cases parallel results in previous studies, such as the Endophthalmitis Vitrectomy Study, although the addition of a control group in the ESCRS study elicited additional findings. CONCLUSION: Swollen lids, pain, and an opaque vitreous were statistically associated with proven endophthalmitis cases in the ESCRS study.

  7. Poor mobilizer: a retrospective study on proven and predicted incidence according to GITMO criteria.

    Science.gov (United States)

    Piccirillo, Nicola; Vacca, Michele; Lanti, Alessandro; Ipsevich, Francesco; Maresca, Maddalena; Fiorelli, Elena; Bianchi, Maria; Adorno, Gaspare; Pierelli, Luca; Majolino, Ignazio; Leone, Giuseppe; Zini, Gina

    2012-10-01

    The Italian Group for Bone Marrow Transplantation (Gruppo Italiano Trapianto di Midollo Osseo, GITMO) recently formalized criteria for a shared definition of poor mobilizer in order to facilitate randomized clinical trials and study comparison focusing on the efficacy of current mobilizing regimens. The availability of a standardized tool for poor mobilizer definition suggested us to retrospectively test GITMO criteria feasibility and applicability. Therefore we analyzed medical and laboratory records of adult patients affected by myeloma (MM) or lymphoma undergoing mobilization for autologous peripheral blood HSC collection from January 2010 to June 2011, at Servizio di Emotrasfusione, Istituto di Ematologia, Università Cattolica Del Sacro Cuore, Roma, UOC SIMT AO S. Camillo Forlanini Roma and SIMT Fondazione Policlinico Tor Vergata Roma. We collected data about 227 patients (134 male, 93 female) affected by MM (31.3%) NHL (58.6%) e HD (10.1%). Thirty-nine patients, 21 male and 18 female met proven poor mobilizer criteria definition resulting in a incidence of 17.2% (12.7% in MM, 21.8% in NHL and 4.3% in HD). Eleven patients, seven affected by lymphoma and four affected by myeloma, were defined predicted PM according to major criteria. Eight patients, seven affected by lymphoma and one affected by myeloma, were define predicted PM according to minor criteria. Sixteen out of 39 patients defined as poor mobilizer either according to major or minor criteria underwent collection procedures and eight (20.5%) achieved a cell dose ⩾2×10(6)/kg CD34(+) cells. GITMO criteria application was easy and resulted in poor mobilizer incidence comparable to current literature. Definitions of proven poor mobilizer and predicted poor mobilizer according to major criteria were very effective while minor criteria were less predictive. These results came from a retrospective analysis and therefore should be validated in future prospective trial. On the other hand these data could be

  8. Nuclear Thermal Rocket (Ntr) Propulsion: A Proven Game-Changing Technology for Future Human Exploration Missions

    Science.gov (United States)

    Borowski, Stanley K.; McCurdy, David R.; Packard, Thomas W.

    2012-01-01

    The NTR represents the next evolutionary step in high performance rocket propulsion. It generates high thrust and has a specific impulse (Isp) of approx.900 seconds (s) or more V twice that of today s best chemical rockets. The technology is also proven. During the previous Rover and NERVA (Nuclear Engine for Rocket Vehicle Applications) nuclear rocket programs, 20 rocket reactors were designed, built and ground tested. These tests demonstrated: (1) a wide range of thrust; (2) high temperature carbide-based nuclear fuel; (3) sustained engine operation; (4) accumulated lifetime; and (5) restart capability V all the requirements needed for a human mission to Mars. Ceramic metal cermet fuel was also pursued, as a backup option. The NTR also has significant growth and evolution potential. Configured as a bimodal system, it can generate electrical power for the spacecraft. Adding an oxygen afterburner nozzle introduces a variable thrust and Isp capability and allows bipropellant operation. In NASA s recent Mars Design Reference Architecture (DRA) 5.0 study, the NTR was selected as the preferred propulsion option because of its proven technology, higher performance, lower launch mass, simple assembly and mission operations. In contrast to other advanced propulsion options, NTP requires no large technology scale-ups. In fact, the smallest engine tested during the Rover program V the 25,000 lbf (25 klbf) Pewee engine is sufficient for human Mars missions when used in a clustered engine arrangement. The Copernicus crewed spacecraft design developed in DRA 5.0 has significant capability and a human exploration strategy is outlined here that uses Copernicus and its key components for precursor near Earth asteroid (NEA) and Mars orbital missions prior to a Mars landing mission. Initially, the basic Copernicus vehicle can enable reusable 1-year round trip human missions to candidate NEAs like 1991 JW and Apophis in the late 2020 s to check out vehicle systems. Afterwards, the

  9. Data Provenance as a Tool for Debugging Hydrological Models based on Python

    Science.gov (United States)

    Wombacher, A.; Huq, M.; Wada, Y.; Van Beek, R.

    2012-12-01

    There is an increase in data volume used in hydrological modeling. The increasing data volume requires additional efforts in debugging models since a single output value is influenced by a multitude of input values. Thus, it is difficult to keep an overview among the data dependencies. Further, knowing these dependencies, it is a tedious job to infer all the relevant data values. The aforementioned data dependencies are also known as data provenance, i.e. the determination of how a particular value has been created and processed. The proposed tool infers the data provenance automatically from a python script and visualizes the dependencies as a graph without executing the script. To debug the model the user specifies the value of interest in space and time. The tool infers all related data values and displays them in the graph. The tool has been evaluated by hydrologists developing a model for estimating the global water demand [1]. The model uses multiple different data sources. The script we analysed has 120 lines of codes and used more than 3000 individual files, each of them representing a raster map of 360*720 cells. After importing the data of the files into a SQLite database, the data consumes around 40 GB of memory. Using the proposed tool a modeler is able to select individual values and infer which values have been used to calculate the value. Especially in cases of outliers or missing values it is a beneficial tool to provide the modeler with efficient information to investigate the unexpected behavior of the model. The proposed tool can be applied to many python scripts and has been tested with other scripts in different contexts. In case a python code contains an unknown function or class the tool requests additional information about the used function or class to enable the inference. This information has to be entered only once and can be shared with colleagues or in the community. Reference [1] Y. Wada, L. P. H. van Beek, D. Viviroli, H. H. Drr, R

  10. Oxygen isotopic ratios in quartz as an indicator of provenance of dust

    Energy Technology Data Exchange (ETDEWEB)

    Jackson, M L

    1977-01-01

    Quartz was isolated in the long range aerosol size range (fine silt, 1-10 ..mu..m in diameter) from atmospheric aerosols, wind-erosive soils, soil silts, shales, and Pacific pelagic sediments of the Northern and Southern Hemispheres, to trace their provenance or origin, as part of a study of dust mineral sequestering of /sup 137/Cs and other products of nuclear fission. The oxygen isotopic ratio (/sup 18/O//sup 16/O) was determined by mass spectrometry. The provenance has been established for this fine silt fraction which reflects the relative proportion of two classes of quartz source: (a) weathering of igneous and metamorphic rocks (high temperature origin and low /sup 18/O//sup 16/O ratio) and (b) of quartz crystallized in cherts and overgrowths (low temperature origin and high /sup 18/O//sup 16/O ratio). This quartz mixing ratio is a basic model or paradigm. Analyses of present day atmospheric aerosols and eolian-derived soils, Pacific pelagic sediments, and now-raised Phanerozoic marine sediments show that the Northern and Southern Hemispheres have separate large-scale reservoirs of the fine grain sizes that contribute to aerosol dusts. These can be identified by distinctive values of /sup 18/O//sup 16/O ratios of the quartz therein. The difference in quartz delta/sup 18/O value in parts per thousand per ml (/sup 0///sub 00/ of about 12 +- 2 /sup 0///sub 00/ in Southern Hemisphere mixed detrital sediments and about 19 +- 2 /sup 0///sub 00/ in those of the Northern Hemisphere (for constant size, the 1-10 ..mu..m size fraction) results from the presence of a considerably larger proportion of quartz having low-temperature origin and higher delta/sup 18/O values (chert, silica overgrowths, etc.) in the Northern Hemisphere reservoirs. The early paleoclimatic and paleogeochemical differences remain the control of the North-South Hemisphere difference in delta/sup 18/O values in long-range aerosol sized quartz.

  11. Neurocognitive functions and brain atrophy after proven neuroborreliosis: a case-control study.

    Science.gov (United States)

    Schmidt, Holger; Djukic, Marija; Jung, Klaus; Holzgraefe, Manfred; Dechent, Peter; von Steinbüchel, Nicole; Blocher, Joachim; Eiffert, Helmut; Schmidt-Samoa, Carsten

    2015-08-19

    Patients often report neurocognitive difficulties after neuroborreliosis (NB). The frequency and extent of cognitive problems in European patients have been studied incompletely. Sixty patients received a neurological and neuropsychological work-up 6 months or longer after treatment for proven NB. Quality of life, psychiatric symptom load, and brain atrophy were measured. All results were compared with a group of 30 healthy control persons adapted for age, gender and education being serologically negative for Borrelia burgdorferi senso latu. A cognitive sum score and a global sum score including cognitive, psychological results and quality of life data was calculated for both groups. Patients after NB showed a lower (i.e. more impaired) score on the Scripps Neurological rating scale (SNRS), but the observed neurological deficits were generally mild (mean ± SD: 97.1 ± 4.7 vs. 99.1 ± 2.4, p = 0.02). The mean neuropsychological domain results of the NB group were all within the normal range. However, a lower performance was found for the frontal executive function z-values (mean ± SD -0.29 ± 0.60 vs. 0.09 ± 0.60; p = 0.0059) of NB patients. Comparing the global sum score (mean ± SD 11.3 ± 4.2 NB vs. 14.3 ± 2.9 control , p = 0.001) and the cognitive sum score of the NB group with those of the control group (mean ± SD -0.15 ± 0.42 NB vs. 0.08 ± 0.31 control , p = 0.0079), both differences were statistically different. The frequencies of impaired global sum scores and those of the pathological cognitive sum scores (p = 0.07) did not differ statistically. No significant differences were found for health-related quality of life (hrQoL), sleep, psychiatric symptom load, or brain atrophy. The mean cognitive functions of patients after proven NB were in the normal range. However, we were able to demonstrate a lower performance for the domain of frontal executive functions, for the mean cognitive sum score and the global sum score as a sign of subtle but measurable

  12. Password-only authenticated three-party key exchange proven secure against insider dictionary attacks.

    Science.gov (United States)

    Nam, Junghyun; Choo, Kim-Kwang Raymond; Paik, Juryon; Won, Dongho

    2014-01-01

    While a number of protocols for password-only authenticated key exchange (PAKE) in the 3-party setting have been proposed, it still remains a challenging task to prove the security of a 3-party PAKE protocol against insider dictionary attacks. To the best of our knowledge, there is no 3-party PAKE protocol that carries a formal proof, or even definition, of security against insider dictionary attacks. In this paper, we present the first 3-party PAKE protocol proven secure against both online and offline dictionary attacks as well as insider and outsider dictionary attacks. Our construct can be viewed as a protocol compiler that transforms any 2-party PAKE protocol into a 3-party PAKE protocol with 2 additional rounds of communication. We also present a simple and intuitive approach of formally modelling dictionary attacks in the password-only 3-party setting, which significantly reduces the complexity of proving the security of 3-party PAKE protocols against dictionary attacks. In addition, we investigate the security of the well-known 3-party PAKE protocol, called GPAKE, due to Abdalla et al. (2005, 2006), and demonstrate that the security of GPAKE against online dictionary attacks depends heavily on the composition of its two building blocks, namely a 2-party PAKE protocol and a 3-party key distribution protocol.

  13. Discovery radiomics via evolutionary deep radiomic sequencer discovery for pathologically proven lung cancer detection.

    Science.gov (United States)

    Shafiee, Mohammad Javad; Chung, Audrey G; Khalvati, Farzad; Haider, Masoom A; Wong, Alexander

    2017-10-01

    While lung cancer is the second most diagnosed form of cancer in men and women, a sufficiently early diagnosis can be pivotal in patient survival rates. Imaging-based, or radiomics-driven, detection methods have been developed to aid diagnosticians, but largely rely on hand-crafted features that may not fully encapsulate the differences between cancerous and healthy tissue. Recently, the concept of discovery radiomics was introduced, where custom abstract features are discovered from readily available imaging data. We propose an evolutionary deep radiomic sequencer discovery approach based on evolutionary deep intelligence. Motivated by patient privacy concerns and the idea of operational artificial intelligence, the evolutionary deep radiomic sequencer discovery approach organically evolves increasingly more efficient deep radiomic sequencers that produce significantly more compact yet similarly descriptive radiomic sequences over multiple generations. As a result, this framework improves operational efficiency and enables diagnosis to be run locally at the radiologist's computer while maintaining detection accuracy. We evaluated the evolved deep radiomic sequencer (EDRS) discovered via the proposed evolutionary deep radiomic sequencer discovery framework against state-of-the-art radiomics-driven and discovery radiomics methods using clinical lung CT data with pathologically proven diagnostic data from the LIDC-IDRI dataset. The EDRS shows improved sensitivity (93.42%), specificity (82.39%), and diagnostic accuracy (88.78%) relative to previous radiomics approaches.

  14. Radial growth and percent of latewood in Scots pine provenance trials in Western and Central Siberia

    Directory of Open Access Journals (Sweden)

    S. R. Kuzmin

    2016-12-01

    Full Text Available Percent of latewood of Boguchany and Suzun Scots pine climatypes has been studied in two provenance trials (place of origin and trial place. For Boguchany climatype the place of origin is south taiga of Central Siberia (Krasnoyarsk Krai, the place of trial is forest-steppe zone of Western Siberia (Novosibirsk Oblast and vice versa for Suzun climatype – forest-steppe zone of Western Siberia is the place of origin, south taiga is the place of trial. Comparison of annual average values of latewood percent of Boguchany climatype in south taiga and forest-steppe revealed the same numbers – 19 %. Annual variability of this trait in south taiga is distinctly lower and equal to 17 %, in forest-steppe – 35 %. Average annual values of latewood percent of Suzun climatype in the place of origin and trial place are close (20 and 21 %. Variability of this trait for Suzun climatype is higher than for Boguchany and equal to 23 % in south taiga and 42 % in forest-steppe. Climatic conditions in southern taiga in Central Siberia in comparison with forest-steppe in Western Siberia make differences between climatypes stronger. Differences between climatypes are expressed in different age of maximal increments of diameter, different tree ring width and latewood percent values and in different latewood reaction to weather conditions.

  15. Distribution and provenance of detrital minerals in southern coast of Shandong Peninsula

    Science.gov (United States)

    Liu, Jinqing; Yin, Ping; Zhang, Yong; Song, Hongying; Bi, Shipu; Cao, Zhimin; Liu, Shanshan

    2017-10-01

    Detrital minerals of 137 offshore and 22 river sediment samples collected from Qingdao coastal areas have been analyzed. Four mineral assemblage provinces can be classified by Q-mode cluster analysis. Factor analysis identifies two major factors that account for the total variability in most common minerals: 1) based on the relationship of quartz, hornblende, actinolite, micas, and authigenic pyrite, 41.55% of the variability is related to sediment sources; 2) based on the relationship of epidote, garnet, sphere, and ilmenite, 23.21% can be related to strong hydrodynamic conditions that control transport and sedimentation. By comparing mineral compositions of river waters in the study area, the following four mineral provenances can be identified. The Qingdao-Laoshan nearshore area has a quartz-feldspar-epidote-hornblende-limenite-limonite-sphene assemblage, which is largely attributed to relict sediment and coastal erosion. The Jimo-Haiyang nearshore area has a quartz-feldspar-hornblende-epidote-limonite-mica-actinolite assemblage, derived largely from the Wulong River and Rushan River, and is also affected by the Huanghe River, while the Qianliyan Island area in the deeper offshore area separated by a mud belt has a similar assemblage. The Haiyang-Rushan nearshore area has a quartz-feldspar-hornblende-epidote-micas-limonite assemblage, indicating multiple sources from the Rushan River, the Wulong River, the Huanghe River, and coastal erosion. The central area, located in an eddy center, has a mica-authigenic pyrite-hornblende-quartzfeldspar assemblage, indicating multiple sources dominated by Huanghe River distal sediments.

  16. Terrigenous sediment provenance from geochemical tracers, south Molokai reef flat, Hawaii

    Science.gov (United States)

    Takesue, R.K.

    2010-01-01

    Land-derived runoff is one of the greatest threats to coral-reef health. Identification of runoff sources is an important step in erosion mitigation efforts. A geochemical sediment provenance study was done in uplands and across the adjacent fringing reef on the southeast shore of Molokai, Hawaii, to determine whether sediment runoff originated from hillsides or gulches. Source-region identification was based on geochemical differences between alkalic basalt, which outcrops on hillsides, and tholeiitic basalt, which outcrops in gulches. In Kawela watershed, copper to iron ratios (Cu/Fe) were distinct in hillside soil versus gulch sediment and suggest that hillside erosion is the predominant mechanism of sediment delivery to the nearshore. This suggests that runoff-mitigation efforts should take steps to reduce hillside erosion. Cadmium to thorium ratios (Cd/Th) in nearshore sediment suggest that there is a high-Cd source of runoff east of Kamalo Gulch. This compositional difference is consistent with the predominance of tholeiitic basalt on the eastern end of Molokai.

  17. Academic Provenance: Mapping Geoscience Students' Academic Pathways to their Career Trajectories

    Science.gov (United States)

    Houlton, H. R.; Gonzales, L. M.; Keane, C. M.

    2011-12-01

    Targeted recruitment and retention efforts for the geosciences have become increasingly important with the growing concerns about program visibility on campuses, and given that geoscience degree production remains low relative to the demand for new geoscience graduates. Furthermore, understanding the career trajectories of geoscience degree recipients is essential for proper occupational placement. A theoretical framework was developed by Houlton (2010) to focus recruitment and retention efforts. This "pathway model" explicitly maps undergraduate students' geoscience career trajectories, which can be used to refine existing methods for recruiting students into particular occupations. Houlton's (2010) framework identified three main student population groups: Natives, Immigrants or Refugees. Each student followed a unique pathway, which consisted of six pathway steps. Each pathway step was comprised of critical incidents that influenced students' overall career trajectories. An aggregate analysis of students' pathways (Academic Provenance Analysis) showed that different populations' pathways exhibited a deviation in career direction: Natives indicated intentions to pursue industry or government sectors, while Immigrants intended to pursue academic or research-based careers. We expanded on Houlton's (2010) research by conducting a follow-up study to determine if the original participants followed the career trajectories they initially indicated in the 2010 study. A voluntary, 5-question, short-answer survey was administered via email. We investigated students' current pathway steps, pathway deviations, students' goals for the near future and their ultimate career ambitions. This information may help refine Houlton's (2010) "pathway model" and may aid geoscience employers in recruiting the new generation of professionals for their respective sectors.

  18. Selection of core animals in the Algorithm for Proven and Young using a simulation model.

    Science.gov (United States)

    Bradford, H L; Pocrnić, I; Fragomeni, B O; Lourenco, D A L; Misztal, I

    2017-12-01

    The Algorithm for Proven and Young (APY) enables the implementation of single-step genomic BLUP (ssGBLUP) in large, genotyped populations by separating genotyped animals into core and non-core subsets and creating a computationally efficient inverse for the genomic relationship matrix (G). As APY became the choice for large-scale genomic evaluations in BLUP-based methods, a common question is how to choose the animals in the core subset. We compared several core definitions to answer this question. Simulations comprised a moderately heritable trait for 95,010 animals and 50,000 genotypes for animals across five generations. Genotypes consisted of 25,500 SNP distributed across 15 chromosomes. Genotyping errors and missing pedigree were also mimicked. Core animals were defined based on individual generations, equal representation across generations, and at random. For a sufficiently large core size, core definitions had the same accuracies and biases, even if the core animals had imperfect genotypes. When genotyped animals had unknown parents, accuracy and bias were significantly better (p ≤ .05) for random and across generation core definitions. © 2017 The Authors. Journal of Animal Breeding and Genetics Published by Blackwell Verlag GmbH.

  19. Provenance Establishment of Stingless Bee Honey Using Multi-element Analysis in Combination with Chemometrics Techniques.

    Science.gov (United States)

    Shadan, Aidil Fahmi; Mahat, Naji A; Wan Ibrahim, Wan Aini; Ariffin, Zaiton; Ismail, Dzulkiflee

    2017-04-06

    As consumption of stingless bee honey has been gaining popularity in many countries including Malaysia, ability to identify accurately its geographical origin proves pertinent for investigating fraudulent activities for consumer protection. Because a chemical signature can be location-specific, multi-element distribution patterns may prove useful for provenancing such product. Using the inductively coupled-plasma optical emission spectrometer as well as principal component analysis (PCA) and linear discriminant analysis (LDA), the distributions of multi-elements in stingless bee honey collected at four different geographical locations (North, West, East, and South) in Johor, Malaysia, were investigated. While cross-validation using PCA demonstrated 87.0% correct classification rate, the same was improved (96.2%) with the use of LDA, indicating that discrimination was possible for the different geographical regions. Therefore, utilization of multi-element analysis coupled with chemometrics techniques for assigning the provenance of stingless bee honeys for forensic applications is supported. © 2017 American Academy of Forensic Sciences.

  20. Comparative Analysis of Volatile Compound Profiles of Propolis From Different Provenances.

    Science.gov (United States)

    Mohtar, Lina G; Rodríguez, Sergio A; Nazareno, Mónica A

    2017-12-27

    Propolis is a complex mixture that honey bees produce from the exudates of various plants and presents many medicinal properties. Its chemical compositions varies according to the phytogeography characteristics of each region, among others. The aim of this study was to identify and characterize the volatile organic compounds (VOCs) present in Venezuelan propolis and compare with reference samples such as Brazilian and Argentinian ones. A total of 90 VOCs were identified in a series of propolis samples using both Solid-Phase Microextraction (SPME) and Dynamic Headspace (DHS), both coupled to C-EI-MS. In the case of Venezuelan propolis, sesquiterpenes, esters, aromatic compounds and aliphatic hydrocarbons were identified. The limonene was found only in Venezuelan samples being the first time it is identified in samples from this country. In the case of green propolis, β-caryophyllene and nerolidol were the major ones. As for the Argentinian samples, the prenyl acetate, benzyl acetate, and 2-phenylethyl acetate were detected only in these samples. Possible chemical markers of natural sources such as limonene were detected using DHS extraction. Several compounds have also been identified for the first time in Venezuelan propolis. Cluster analysis allowed to relate propolis VOCs profile with their provenance. This article is protected by copyright. All rights reserved.

  1. Effect of Autoantibodies to Erythropoietin Receptor in Systemic Lupus Erythematosus with Biopsy-proven Lupus Nephritis.

    Science.gov (United States)

    Hara, Akinori; Furuichi, Kengo; Yamahana, Junya; Yasuda, Haruka; Iwata, Yasunori; Sakai, Norihiko; Shimizu, Miho; Kaneko, Shuichi; Wada, Takashi

    2016-07-01

    We examined the clinical significance of autoantibodies to the erythropoietin receptor (EPOR) in patients with systemic lupus erythematosus (SLE) who had biopsy-proven lupus nephritis (LN). Forty-six Japanese patients with SLE with LN who had undergone renal biopsy during 1993-2014 were enrolled in this study and followed for a mean of 83 months. Sera from those patients were screened for anti-EPOR antibodies using ELISA. Anti-EPOR antibodies were detected in 18 (39%) of the 46 patients with SLE with anemia. Anti-EPOR antibodies were associated with low hemoglobin concentrations and reticulocytopenia. In addition, anti-EPOR antibodies were positively correlated with SLE disease activity, even though serum levels of the complement factors 3 and 4 did not differ between the 2 groups. In patients with International Society of Nephrology/Renal Pathology Society 2003 class IV LN, anti-EPOR antibodies were associated with active lesions including cellular crescents in glomeruli. Decrease in renal function was more frequently observed in patients without complete or partial renal response than in patients with it, and serum levels of the antibodies as well as renal response to treatment were significant risk factors for progression of renal dysfunction. The present study suggests that anti-EPOR antibodies might be involved in overall disease activity and active renal lesions, as well as in the impaired erythropoiesis in patients with SLE with LN. Further, the levels of anti-EPOR antibodies may be an additional predictor for renal injury.

  2. Partitioning sediment flux by provenance and tracing erosion patterns in Taiwan

    Science.gov (United States)

    Resentini, Alberto; Goren, Liran; Castelltort, Sébastien; Garzanti, Eduardo

    2017-07-01

    We critically evaluate the potential and limitations of an alternative way to calculate erosion rates based on petrographic and mineralogical fingerprints of fluvial sediments coupled with gauged sediment fluxes. Our approach allows us to apportion sediment loads to different lithological units, and consequently to discriminate erosion rates in different tectonic domains within each catchment. Our provenance data on modern Taiwanese sands indicate focused erosion in the Backbone Range and Tananao Complex of the retrowedge. Lower rates are inferred for the northern part of the island characterized by tectonic extension and for the western foothills in the prowedge. The principal factor of uncertainty affecting our estimates is the inevitably inaccurate evaluation of total sediment load, because only the suspended flux was measured. Another is the assumption that suspended load and bed load are derived from the same sources in fixed proportions. Additional errors are caused by the insufficiently precise definition of lithologically similar compositional end-members and by the temporal variability of sediment composition at the outlet of each catchment related to the spatial variability of erosional processes and triggering agents such as earthquakes, typhoons, and landslides. To evaluate the robustness of our findings, we applied a morphometric technique based on the stream-power model. The results obtained are broadly consistent, with local discrepancies ascribed to poorly constrained assumptions and choices of scaling parameters. Our local erosion estimates are consistent with GPS uplift rates measured on a decadal timescale and generally higher than basin-wide results inferred from cosmogenic-nuclide and thermochronology data.

  3. Sarcoidosis with involvement of the paranasal sinuses - a retrospective analysis of 12 biopsy-proven cases

    Science.gov (United States)

    2013-01-01

    Background Extrapulmonary involvement by sarcoidosis is observed in about 30–40% of patients with sarcoidosis. Little is known about the frequency and clinical characteristics of sinonasal sarcoidosis. Methods We retrospectively analyzed 12 cases of biopsy-proven sinonasal sarcoidosis. Patients were identified from a patient population of 1360 patients with sarcoidosis at the Outpatient Clinic for Sarcoidosis and Rare Lung Diseases at LungClinic Grosshansdorf, a tertiary care hospital for respiratory medicine. Results The most frequent signs and symptoms were nasal polyps (4 cases), epistaxis (3 cases), nasal crusts (8 cases) and anosmia (5 cases). Pulmonary sarcoidosis of the patients was staged as stage I (n = 1) and stage II (n = 11) on chest radiographs. Spirometry was normal in 11 patients. 7 patients had a diffusion capacity of the lung for carbon monoxide of less than 90% of predicted. Other organs were affected in 8 patients. All patients received systemic corticosteroid treatment and most patients received topical steroids. 5 patients received steroid sparing agents. Repeated sinus surgery had to be performed in 4 patients. Conclusions Sinonasal involvement is a rare disease manifestation of sarcoidosis with a frequency slightly lower than 1% in our patient population. The clinical course of sinonasal sarcoidosis can be complicated by relapse despite systemic immunosuppressive treatment and repeated sinus surgery. PMID:24070015

  4. Prevalence of Dietary Supplement Use in Patients with Proven or Suspected Cardiovascular Disease

    Directory of Open Access Journals (Sweden)

    Yu Sun Bin

    2011-01-01

    Full Text Available Systematic search of bibliographic databases was conducted to describe the prevalence of dietary supplement use in cardiac patients. Included for review were studies that investigated supplement use in people with cardiovascular risk factors or proven cardiovascular disease. Databases searched were Medline, EMBASE, CINAHL, AMED, Meditext, H&S and IPA. Over five hundred articles were retrieved and twenty studies met the criteria for this review. Dietary supplements were taken by a median 36% (interquartile range: 26–42% of cardiac patients; 36% (IQR 18–43% reported taking a vitamin/mineral supplement and 12% (IQR 7–21% used herbal supplements. Many users indicated that supplements were taken specifically for heart health and 16–64% of users reported using supplements alongside prescription medications. However 39–95% of treating physicians were unaware of patients’ supplement use. Dietary supplement use in patients with cardiovascular disease appears common, as does the concurrent use of supplements with prescription medicines. This information is often not communicated to doctors and treating physicians may need to be more proactive in asking about supplement use.

  5. Password-Only Authenticated Three-Party Key Exchange Proven Secure against Insider Dictionary Attacks

    Science.gov (United States)

    Nam, Junghyun; Choo, Kim-Kwang Raymond

    2014-01-01

    While a number of protocols for password-only authenticated key exchange (PAKE) in the 3-party setting have been proposed, it still remains a challenging task to prove the security of a 3-party PAKE protocol against insider dictionary attacks. To the best of our knowledge, there is no 3-party PAKE protocol that carries a formal proof, or even definition, of security against insider dictionary attacks. In this paper, we present the first 3-party PAKE protocol proven secure against both online and offline dictionary attacks as well as insider and outsider dictionary attacks. Our construct can be viewed as a protocol compiler that transforms any 2-party PAKE protocol into a 3-party PAKE protocol with 2 additional rounds of communication. We also present a simple and intuitive approach of formally modelling dictionary attacks in the password-only 3-party setting, which significantly reduces the complexity of proving the security of 3-party PAKE protocols against dictionary attacks. In addition, we investigate the security of the well-known 3-party PAKE protocol, called GPAKE, due to Abdalla et al. (2005, 2006), and demonstrate that the security of GPAKE against online dictionary attacks depends heavily on the composition of its two building blocks, namely a 2-party PAKE protocol and a 3-party key distribution protocol. PMID:25309956

  6. Elemental and isotopic fingerprint of Argentinean wheat. Matching soil, water, and crop composition to differentiate provenance.

    Science.gov (United States)

    Podio, Natalia S; Baroni, María V; Badini, Raúl G; Inga, Marcela; Ostera, Héctor A; Cagnoni, Mariana; Gautier, Eduardo A; García, Pilar Peral; Hoogewerff, Jurian; Wunderlin, Daniel A

    2013-04-24

    The aim of this study was to investigate if elemental and isotopic signatures of Argentinean wheat can be used to develop a reliable fingerprint to assess its geographical provenance. For this pilot study we used wheat cultivated at three different regions (Buenos Aires, Córdoba, and Entre Ríos), together with matching soil and water. Elemental composition was determined by ICP-MS. δ(13)C and δ(15)N were measured by isotopic ratio mass spectrometry, while (87)Sr/(86)Sr ratio was determined using thermal ionization mass spectrometry. Wheat samples from three sampling sites were differentiated by the combination of 11 key variables (K/Rb, Ca/Sr, Ba, (87)Sr/(86)Sr, Co, Mo, Zn, Mn, Eu, δ(13)C, and Na), demonstrating differences among the three studied regions. The application of generalized Procrustes analysis showed 99.2% consensus between cultivation soil, irrigation water, and wheat samples, in addition to clear differences between studied areas. Furthermore, canonical correlation analysis showed significant correlation between the elemental and isotopic profiles of wheat and those corresponding to both soil and water (r(2) = 0.97, p soil, water, and wheat samples using different statistical methods, showing that wheat elemental and isotopic compositions are mainly related to soil and irrigation water characteristics of the site of growth.

  7. Provenance and geochemical behavior of fluorine in the soils of an endemic fluorosis belt, central Iran

    Science.gov (United States)

    Dehbandi, Reza; Moore, Farid; Keshavarzi, Behnam

    2017-05-01

    The concentration of fluorine, major, trace and rare earth elements (REEs) were used to estimate the probable sources and provenance of fluorine in the soils of an endemic fluorosis belt in central Iran. Total fluorine (TF) in soils varied from 146 to 406 mg/kg with a mean of 277.5 mg/kg. Calculated enrichment factor (EF) and single factor pollution index (SFPI) revealed that the majority of soil samples were moderately contaminated by fluorine. The very strong positive correlation of TF with weathering indices and soil's fine sized fractions indicated that chemical weathering and alteration of parent rocks/soils are the main controlling factors of fluorine behavior in soils. Fluorine affinity to immobile transition trace elements and REEs suggested the role of heavy minerals as the potential F host phases. Modal mineralogy along with SEM-EDX analysis indicated that apatite, fluorapophyllite, epidote, biotite, muscovite and chlorite, as well as, clay minerals are the main F-bearing minerals in the studied soils. Discriminant, bivariate and ternary diagrams of elemental compositions displayed similar geochemical signature of soils to intermediate-acidic rocks and local shales. Based on the weathering indices, soils were immature and showed a non-steady state weathering trend from upper continental crust (UCC), acidic and intermediate igneous source rocks towards shale composition possibly due to mixing of moderately weathered and un-weathered sources of different primary compositions.

  8. Maximum sedimentation ages and provenance of metasedimentary rocks from Tinos Island, Cycladic blueschist belt, Greece

    Science.gov (United States)

    Hinsken, Tim; Bröcker, Michael; Berndt, Jasper; Gärtner, Claudia

    2016-10-01

    U-Pb zircon ages of five metasedimentary rocks from the Lower Unit on Tinos Island (Cycladic blueschist belt, Greece) document supply of detritus from various Proterozoic, Paleozoic and Mesozoic source rocks as well as post-depositional metamorphic zircon formation. Essential features of the studied zircon populations are Late Cretaceous (70-80 Ma) maximum sedimentation ages for the lithostratigraphic succession above the lowermost dolomite marble, significant contributions from Triassic to Neoproterozoic source rocks, minor influx of detritus recording Paleoproterozoic and older provenance (1.9-2.1, 2.4-2.5 and 2.7-2.8 Ga) and a lack or paucity of zircons with Mesoproterozoic ages (1.1-1.8 Ga). In combination with biostratigraphic evidence, the new dataset indicates that Late Cretaceous or younger rocks occur on top of or very close to the basal Triassic metacarbonates, suggesting a gap in the stratigraphic record near the base of the metamorphic succession. The time frame for sediment deposition is bracketed by the youngest detrital zircon ages (70-80 Ma) and metamorphic overgrowths that are related to high-pressure/low-temperature overprinting in the Eocene. This time interval possibly indicates a significant difference to the sedimentation history of the southern Cyclades, where Late Cretaceous detrital zircons have not yet been detected.

  9. Taxonomic revision and stratigraphic provenance of 'Histiophorus rotundu' Woodward 1901 (Teleostei, Perciformes)

    Science.gov (United States)

    Monsch, K.A.; Fierstine, H.L.; Weems, R.E.

    2005-01-01

    Until recently, Histiophorus rotundus Woodward 1901, was known from a single, poorly preserved rostrum from the Tertiary phosphate beds near Charleston, South Carolina, an area from which many fossils have been described. The specimen is relatively featureless externally; its internal anatomy is unknown and the documentation of its geological provenance was poor. In an earlier revision the species was transferred to the fossil billfish genus Xiphiorhynchus Van Beneden, 1871. Here we confirm this designation, supported by new morphological studies of the holotype, recently found specimens of Xiphiorhynchus rotundus (Woodward, 1901), and the stratigraphic record of Xiphiorhynchus. The systematic paleontology we present is a contribution to the taxonomic revision of billfishes world-wide. Because the holotype is heavily phosphatized and the type locality was vaguely described, we discuss the geology of the phosphate mining districts of the Charleston region. Based on our studies, we can narrow the possible age of the holotype to late Oligocene or early Miocene. We suggest X. rotundus was extinct by the Burdigalian. 

  10. Provenance studies on Dead Sea scrolls parchment by means of quantitative micro-XRF.

    Science.gov (United States)

    Wolff, Timo; Rabin, Ira; Mantouvalou, Ioanna; Kanngiesser, Birgit; Malzer, Wolfgang; Kindzorra, Emanuel; Hahn, Oliver

    2012-02-01

    In this study, we address the question of the provenance and origin of the Dead Sea Scrolls manuscripts. A characteristic low ratio of chlorine to bromine, corresponding to that of the Dead Sea water, may serve as an indicator for local production. For this aim we developed a non-destructive procedure to determine the Cl/Br ratio in the parchment of these manuscripts. Micro-X-ray fluorescence (μ-XRF) measurements of a large number of parchment and leather fragments from the Dead Sea Scrolls were analyzed with a routine we developed based on fundamental parameter quantification. This routine takes into account the absorption of the collagen matrix and the influence of the different sample thicknesses. To calculate the representative Cl/Br ratio for each fragment, we investigated the lateral homogeneity and determined the total mass deposition using the intensity of the inelastically scattered, characteristic tube radiation. The distribution of the Cl/Br ratios thus obtained from the μ-XRF measurements make it possible to distinguish fragments whose origin lies within the Dead Sea region from those produced in other locations.

  11. Late Holocene depositional variability and provenance in the lower Ganges-Brahmaputra delta

    Science.gov (United States)

    Flood, Rory; Barr, Iestyn; Weltje, Gert Jan; Roberson, Sam; Russell, Mark; Meneely, John; Orford, Julian

    2017-04-01

    The Sundarbans is one of the largest coastal wetland sites in the world, extending over an area of approximately one million hectares of the western delta of the Ganges and Brahmaputra (G-B) rivers. The western delta has not been directly fluvially sourced, due to the eastward shift of the Ganges. This western extent of the delta is considered abandoned with sediments derived from dominant estuary-tidal dynamics, with sediment source unknown. In this study, sediment cores from the Indian Sundarbans were examined for grain-size distributions (GSDs), mineralogy through X-ray diffraction (XRD), and geochemistry with X-ray fluorescence (XRF). Chemical weathering, transport, and hydrodynamic sorting processes all affect the internal facies composition. The West Bengal Sundarbans has been examined extensively and found to reveal intensively weathered, terrestrial sediment derived from the Ganges River. There is a predominance of quartz and mica with clay minerals, with quartz interpreted as G-B Rivers draining the Himalayas during low-relief tropical weathering. Kaolinite formation is derived from feldspar and muscovite mica with kaolinite the product of intense chemical weathering. Lithofacies through GSDs are indicative of a muddy tidal flat environment with aggradation and fining-up in sizes. Mineralogy and geochemistry has revealed that the TMF in the late Holocene is still considerably influenced by regional sedimentary provenance of the Ganges River.

  12. Focal cortical dysplasia type IIa and IIb: MRI aspects in 118 cases proven by histopathology

    Energy Technology Data Exchange (ETDEWEB)

    Colombo, Nadia; Citterio, Alberto [Ospedale Ca Granda Niguarda, Department of Neuroradiology, Milano (Italy); Tassi, Laura; Mai, Roberto; Sartori, Ivana; Cardinale, Francesco; Lo Russo, Giorgio [Ospedale Niguarda, Claudio Munari Epilepsy Surgery Center, Milano (Italy); Deleo, Francesco; Spreafico, Roberto [IRCCS Foundation Neurological Institute ' ' C. Besta' ' , Department of Epilepsy Clinic and Experimental Neurophysiology, Milano (Italy); Bramerio, Manuela [Ospedale Niguarda, Department of Pathology, Milano (Italy)

    2012-10-15

    This study aims to review the magnetic resonance imaging (MRI) aspects of a large series of patients with focal cortical dysplasia type II (FCD II) and attempt to identify distinctive features in the two histopathological subtypes IIa and IIb. We retrospectively reviewed the MRI scans of 118 patients with histological proven FCD IIa (n = 37) or IIb (n = 81) who were surgically treated for intractable epilepsy. MRI was abnormal in 93 patients (79 %) and unremarkable in 25 (21 %). A dysplastic lesion was identified in 90 cases (97 %) and classified as FCD II in 83 and FCD non-II in seven cases. In three cases, the MRI diagnosis was other than FCD. There was a significant association between the presence of cortical thickening (p = 0.002) and the ''transmantle sign'' (p < 0.001) and a correct MRI diagnosis of FCD II. MRI positivity was more frequent in the patients with FCD IIb than in those with FCD IIa (91 % vs. 51 %), and the detection rate of FCD II was also better in the patients with type IIb (88 % vs. 32 %). The transmantle sign was significantly more frequent in the IIb subgroup (p = 0.003). The rates of abnormal MRI results and correct MRI diagnoses of FCD II were significantly higher in the IIb subgroup. Although other MRI stigmata may contribute to the diagnosis, the only significant correlation was between the transmantle sign and FCD IIb. (orig.)

  13. Radiation-induced brain injury: retrospective analysis of twelve pathologically proven cases

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Dong Soo; Yu, Mi Na; Jang, Hong Seok [The Cancer Center of Seoul St. Mary' s Hospital, The Catholic University of Korea, Seoul (Korea, Republic of); and others

    2011-09-15

    This study was designed to determine the influencing factors and clinical course of pathologically proven cases of radiation-induced brain injury (RIBI). The pathologic records of twelve patients were reviewed; these patients underwent surgery following radiotherapy due to disease progression found by follow-up imaging. However, they were finally diagnosed with RIBI. All patients had been treated with 3-dimensional conventional fractionated radiotherapy and/or radiosurgery for primary or metastatic brain tumors with or without chemotherapy. The histological distribution was as follows: two falx meningioma, six glioblastoma multiform (GBM), two anaplastic oligodendroglioma, one low grade oligodendroglioma, and one small cell lung cancer with brain metastasis. Radiation necrosis was noted in eight patients and the remaining four were diagnosed with radiation change. Gender (p 0.061) and biologically equivalent dose (BED){sub 3} (p = 0.084) were the only marginally influencing factors of radiation necrosis. Median time to RIBI was 7.3 months (range, 0.5 to 61 months). Three prolonged survivors with GBM were observed. In the subgroup analysis of high grade gliomas, RIBI that developed <6 months after radiotherapy was associated with inferior overall survival rates compared to cases of RIBI that occurred {>=}6 months (p = 0.085). Our study demonstrated that RIBI could occur in early periods after conventional fractionated brain radiotherapy within normal tolerable dose ranges. Studies with a larger number of patients are required to identify the strong influencing factors for RIBI development.

  14. Provenance and tectonic significance of the Palaeoproterozoic metasedimentary successions of central and nothern Madagascar

    Science.gov (United States)

    De Waele, B.; Thomas, Ronald J.; Macey, P.H.; Horstwood, M.S.A.; Tucker, R.D.; Pitfield, P.E.J.; Schofield, D.I.; Goodenough, K.M.; Bauer, W.; Key, R.M.; Potter, C.J.; Armstrong, R.A.; Miller, J.A.; Randriamananjara, T.; Ralison, V.; Rafahatelo, J.-M.; Rabarimanana, M.; Bejoma, M.

    2011-01-01

    New detrital zircon U–Pb age data obtained from various quartzite units of three spatially separated supracrustal packages in central and northern Madagascar, show that these units were deposited between 1.8 and 0.8 Ga and have similar aged provenances. The distribution of detrital zircon ages indicates an overwhelming contribution of sources with ages between 2.5 and 1.8 Ga. Possible source rocks with an age of 2.5 Ga are present in abundance in the crustal segments (Antananarivo, Antongil and Masora Domains) either side of a purported Neoproterozoic suture ("Betsimisaraka Suture Zone"). Recently, possible source rocks for the 1.8 Ga age peak have been recognised in southern Madagascar. All three supracrustal successions, as well as the Archaean blocks onto which they were emplaced, are intruded by mid-Neoproterozoic magmatic suites placing a minimum age on their deposition. The similarities in detrital pattern, maximum and minimum age of deposition in the three successions, lend some support to a model in which all of Madagascar's Archaean blocks form a coherent crustal entity (the Greater Dharwar Craton), rather than an amalgamate of disparate crustal blocks brought together only during Neoproterozoic convergence. However, potential source terranes exist outside Madagascar and on either side of the Neoproterozoic sutures, so that a model including a Neoproterozoic suture in Madagascar cannot be dispelled outright.

  15. Password-Only Authenticated Three-Party Key Exchange Proven Secure against Insider Dictionary Attacks

    Directory of Open Access Journals (Sweden)

    Junghyun Nam

    2014-01-01

    Full Text Available While a number of protocols for password-only authenticated key exchange (PAKE in the 3-party setting have been proposed, it still remains a challenging task to prove the security of a 3-party PAKE protocol against insider dictionary attacks. To the best of our knowledge, there is no 3-party PAKE protocol that carries a formal proof, or even definition, of security against insider dictionary attacks. In this paper, we present the first 3-party PAKE protocol proven secure against both online and offline dictionary attacks as well as insider and outsider dictionary attacks. Our construct can be viewed as a protocol compiler that transforms any 2-party PAKE protocol into a 3-party PAKE protocol with 2 additional rounds of communication. We also present a simple and intuitive approach of formally modelling dictionary attacks in the password-only 3-party setting, which significantly reduces the complexity of proving the security of 3-party PAKE protocols against dictionary attacks. In addition, we investigate the security of the well-known 3-party PAKE protocol, called GPAKE, due to Abdalla et al. (2005, 2006, and demonstrate that the security of GPAKE against online dictionary attacks depends heavily on the composition of its two building blocks, namely a 2-party PAKE protocol and a 3-party key distribution protocol.

  16. Provenance study from petrography of the late Permian - Early Triassic sandstones of the Balfour Formation Karoo Supergroup, South Africa

    Science.gov (United States)

    Oghenekome, M. E.; Chatterjee, T. K.; Hammond, N. Q.; van Bever Donker, J. M.

    2016-02-01

    Non marine clastic sediments from the Late Permian - Early Triassic Balfour Formation of the Karoo Supergroup were studied to infer the composition, provenance and influence of weathering conditions. Petrographic studies based on quantitative analysis of the detrital minerals reveal that these sediments (mainly sandstones) are mostly composed of quartz, feldspar and sedimentary and metamorphic rock fragments. There is no significant petrographic variation across the sandstone succession of the study. The sandstones are dominantly feldspathic litharenite and ultralithofeldspathic in composition indicating a metamorphic source area. Modal analysis data plot in the dissected and transitional arc block provenance fields of QmFLt (quartz-feldspar-lithic fragments) diagram suggesting an active margin and magmatic arc signature preserving a recycled provenance.

  17. Inter population variability of frost-resistance in provenances of scot pines (Pinusylvestris L.R. hamata Steven in Turkey

    Directory of Open Access Journals (Sweden)

    Özel Halil Barış

    2016-01-01

    Full Text Available Frost-resistance variability of Scotch pine (Pinus sylvestris L. var. hamata Steven seedlings grown in nurseries conditions, originated from 10 provenances, have been analyzed. The provenances from Black Sea region, Central Anatolian region and Eastern Anatolian region in Turkey have been used in selection of seed zones. The results of frost-resistance tests indicated a strong relationship of implemented freezing degrees with injury degrees of Scotch pine needles and photosynthetic productivities. On the other hand, another significant relationship has been determined between chlorophyll fluorescence and ion leakage methods (r=-0.801. This result shows that those two methods can be safely used in determining the damages due to low temperatures. In frost resistance tests, Scotch pine seedlings from different provenances have been frozen at -10, -20, -30 and -40°C. According to the Duncan test results, it has been determined that damage increased as temperature decreased. The damage level at -10°C implementation is 3.5% which can be tolerated by plants. But when the temperature has been decreased to -20°C, the level of damage has increased to 51.25%. As a result of photosynthetic analyses in this phase, it has been determined that there is a statistically significant relationship between provenances and temperature levels. Under the light of those findings, they have determined that the photosynthetic productivity has significantly decreased at temperatures between -20°C and -40°C. This situation conforms to injury index values determined in this study. As a result of injury index and photosynthetic productivity tests used for determining the damage after frost-resistance tests, it has been determined that the provenances of Amasya-Kunduz, Bolu-Aladağ, Düzce-Yığılca, Samsun-Vezirköprü and Eskişehir-Çatacık are more sensitive to frost than other provenances.

  18. Biomechanical differences in the stem straightening process among Pinus pinaster provenances. A new approach for early selection of stem straightness.

    Science.gov (United States)

    Sierra-de-Grado, Rosario; Pando, Valentín; Martínez-Zurimendi, Pablo; Peñalvo, Alejandro; Báscones, Esther; Moulia, Bruno

    2008-06-01

    Stem straightness is an important selection trait in Pinus pinaster Ait. breeding programs. Despite the stability of stem straightness rankings in provenance trials, the efficiency of breeding programs based on a quantitative index of stem straightness remains low. An alternative approach is to analyze biomechanical processes that underlie stem form. The rationale for this selection method is that genetic differences in the biomechanical processes that maintain stem straightness in young plants will continue to control stem form throughout the life of the tree. We analyzed the components contributing most to genetic differences among provenances in stem straightening processes by kinetic analysis and with a biomechanical model defining the interactions between the variables involved (Fournier's model). This framework was tested on three P. pinaster provenances differing in adult stem straightness and growth. One-year-old plants were tilted at 45 degrees, and individual stem positions and sizes were recorded weekly for 5 months. We measured the radial extension of reaction wood and the anatomical features of wood cells in serial stem cross sections. The integral effect of reaction wood on stem leaning was computed with Fournier's model. Responses driven by both primary and secondary growth were involved in the stem straightening process, but secondary-growth-driven responses accounted for most differences among provenances. Plants from the straight-stemmed provenance showed a greater capacity for stem straightening than plants from the sinuous provenances mainly because of (1) more efficient reaction wood (higher maturation strains) and (2) more pronounced secondary-growth-driven autotropic decurving. These two process-based traits are thus good candidates for early selection of stem straightness, but additional tests on a greater number of genotypes over a longer period are required.

  19. Effects of arbuscular mycorrhizae on growth and mineral nutrition of greenhouse propagated fruit trees from diverse geographic provenances

    Directory of Open Access Journals (Sweden)

    Guissou, T.

    2016-01-01

    Full Text Available Description of the subject. Arbuscular mycorrhizal (AM fungi are known to promote plant growth by enhancing mineral uptake in nutrient deficient soils. These beneficial effects on plant growth may vary considerably between cultivars of a given species and between plant species originating from different locations. Objectives. The present experiment evaluated the response of three Sahelian fruit trees: néré (Parkia biglobosa [Jacq.] G.Don, tamarind (Tamarindus indica L., and jujube (Ziziphus mauritiana Lam., originating from five different geographic provenances, to mycorrhizal colonization, evaluate their respective mycorrhizal dependency (MD and analyze their leaf and stem mineral composition. Method. Trees were cultivated in a nursery on pre-sterilized soil substrate low in available P (2.18 μg·g-1 with or without inoculum of Glomus aggregatum (Schenck & Smith emend. Koske. The experiment was arranged in a factorial design for each fruit tree species separately: 5 provenances x 2 AM treatments (inoculated and non-inoculated [control] with 10 replicates per treatment. Plants were harvested six months after inoculation and different parameters were measured. Results. Overall, the results showed significant provenance variations in the plant response to mycorrhizal inoculation. Néré mycorrhizal plants, from two seed sources, tamarind and jujube plants from one seed source had significant higher dry weight and shoot height than those from other provenances. Jujube plants from 3 out of the 5 provenances showed significant higher MD. It then appears that seed provenance happened to be determinant even though AM-root colonization levels (80-90% do not vary much from one provenance to another. In all cases, the fruit trees benefited from AM fungi with increased N, P and K mineral uptake in aerial parts. In particular P uptake was proportional to MD concentration in AM-jujube plants. Conclusions. These results demonstrate the importance of

  20. A posteriori metadata from automated provenance tracking: integration of AiiDA and TCOD

    National Research Council Canada - National Science Library

    Merkys, Andrius; Mounet, Nicolas; Cepellotti, Andrea; Marzari, Nicola; Gražulis, Saulius; Pizzi, Giovanni

    2017-01-01

    .... This protocol leverages the capabilities of AiiDA, an open-source platform to manage and automate scientific computational workflows, and the TCOD, an open-access database storing computed materials...