Ethylenediaminedisuccinic acid (EDDS) enhances phytoextraction of lead by vetiver grass from contaminated residential soils in a panel study in the field.

Science.gov (United States)

Attinti, Ramesh; Barrett, Kirk R; Datta, Rupali; Sarkar, Dibyendu

2017-06-01

Phytoextraction is a green remediation technology for cleaning contaminated soils. Application of chelating agents increases metal solubility and enhances phytoextraction. Following a successful greenhouse experiment, a panel study under field weather elucidated the efficiency of the chelating agent ethylenediaminedisuccinic acid (EDDS) on phytoextraction of lead (Pb) by vetiver grass, a hyperaccumulator of Pb, and a nonaccumulator fescue grass from residential soils contaminated with Pb-based paint from Baltimore, MD and San Antonio, TX. Three soils from each city with Pb content between 1000 and 2400 mg kg -1 were chosen for the panel study. Sequential extraction revealed that Fe-Mn oxide (60-63%) and carbonate (25-33%) fractions of Pb dominated in Baltimore soils, whereas in San Antonio soils, Pb was primarily bound to the organic fraction (64-70%) because organic content was greater and, secondarily, to the Fe-Mn oxide (15-20%) fraction. Vetiver and fescue grasses were transplanted and grown on wood panels in the field with EDDS applied after 3 months and 13 months. Soil and leachate results indicated that EDDS applications increased Pb solubility in soils. Plant tissues results indicated enhanced the uptake of Pb by vetiver and showed that EDDS application promoted translocation of Pb from root to shoot. Average Pb concentration increased by 53% and 203% in shoots and by 73% and 84% in roots of vetiver after the first and second applications of EDDS, respectively. Concentrations in roots and shoots increased in all tested soils, regardless of soil pH or clay content. After the second application, average Pb concentrations in vetiver were higher than those in fescue by 3.6x in shoots and 8.3x in roots. Visual phytotoxic symptoms from increased bioavailable Pb from EDSS applications were observed in fescue but not in vetiver. This study demonstrated the potential of a chemically-catalyzed phytoremediation system as a cleanup method for lead-contaminated soils

The possible role of hydroxylation in the detoxification of atrazine in mature vetiver (Chrysopogon zizanioides Nash) grown in hydroponics.

Science.gov (United States)

Marcacci, Sylvie; Raventon, Muriel; Ravanel, Patrick; Schwitzguébel, Jean-Paul

2005-01-01

The resistance mechanism of vetiver (Chrysopogon zizanioides) to atrazine was investigated to evaluate its potential for phytoremediation of environment contaminated with the herbicide. Plants known to metabolise atrazine rely on hydroxylation mediated by benzoxazinones, conjugation catalyzed by glutathione-S-transferases and dealkylation probably mediated by cytochromes P450. All three possibilities were explored in mature vetiver grown in hydroponics during this research project. Here we report on the chemical role of benzoxazinones in the transformation of atrazine. Fresh vetiver roots and leaves were cut to extract and study their content in benzoxazinones known to hydroxylate atrazine, such as 2,4-dihydroxy-2H-1,4-benzoxazin-3(4H)-one (DIBOA), 2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one (DIMBOA) and their mono- and di-glucosylated forms. Identification of benzoxazinones was performed by thin layer chromatography (TLC) and comparison of retention factors (Rf) and UV spectra with standards: although some products exhibited the same Rf as standards, UV spectra were different. Furthermore, in vitro hydroxylation of atrazine could not be detected in the presence of vetiver extracts. Finally, vetiver organs exposed to [14C]-atrazine did not produce any significant amount of hydroxylated products, such as hydroxyatrazine (HATR), hydroxy-deethylatrazine (HDEA), and hydroxy-deisopropylatrazine (HDIA). Altogether, these metabolic features suggest that hydroxylation was not a major metabolic pathway of atrazine in vetiver.

Uptake of 2,4,6-Trinitrotoluene (TNT) by Vetiver grass (Vetiviera ziznoides L.) -- Preliminary results from a hydroponic study

Science.gov (United States)

Shakya, K. M.; Sarkar, D.; Datta, R.; Makris, K.; Pachanoor, D.

2006-05-01

2,4,6-Trinitrotoluene(TNT) is a potent mutagen and a Group C human carcinogen that has been widely used to produce munitions and explosives. As a result, vast areas that have been previously used as military ranges, munition burning and open detonation sites have been heavily contaminated with TNT. Conventional remedial activities in such contaminated sites commonly rely on methods such as incineration, land filling and soil composting. Phytoremediation offers a cost-effective solution, utilizing plants to phytoextract TNT from the contaminated soil. We propose the use of vetiver grass (Vetiveria zizanoides) to remove TNT from such contaminated soils. Vetiver is a fast-growing and adaptive grass, enabling its use in TNT-contaminated sites in a wide variety of soil types and climate. We also hypothesized that TNT removal by vetiver grass will be enhanced by utilizing a chaotropic agent (urea) to alter rhizosphere/root hair chemical environment. The objectives of this preliminary hydroponic study were: i) to investigate the effectiveness of vetiver grass in removing TNT from solution, and ii) to evaluate the use of a common agrochemical (urea) in enhancing TNT removal by vetiver grass. Vetiver plants were grown in a hydroponic system with five different TNT concentrations (0, 5, 10, 25, and 50 mg TNT L-1) and three urea concentrations (0, 0.01 and 0.1%). A plant density of 10 g L-1 and three replicate vessels per treatment were used. Aliquots were collected at several time intervals up to 192 hour, and were analyzed for TNT with HPLC. Results showed that vetiver was able to remove TNT from hydroponic solutions. The overall magnitude and kinetics of TNT removal by vetiver grass was enhanced in the presence of urea. TNT removal kinetics depended on TNT and urea initial concentrations, suggestive of second-order kinetic reactions. Preliminary results are encouraging, but in need for verification using more detailed studies involving TNT-contaminated soils. Ongoing

Potential of vetiver (vetiveria zizanioides l.) grass in removing selected pahs from diesel contaminated soil

International Nuclear Information System (INIS)

Nisa, W.U.; Rashid, A.

2015-01-01

Phytoremediation has been renowned as an encouraging technology for the remediation of polycyclic aromatic hydrocarbon (PAH)-contaminated soils, little is known about how plant species behave during the process of PAH phytoremediation. Therefore, the aim of this study was to investigate the effectiveness of vetiver (Vetiveria zizanioides L.) plant in PAH phytoremediation and extraction potential of Vetiveria zizanioides for selected PAHs from the diesel contaminated soil. The field soil samples were spiked with varying concentrations (0.5% and 1%) of diesel and used for pot experiment which was conducted in greenhouse. Vetiver grass was used as experimental plant. Physico-chemical analysis of soil was performed before and after the experiment. Concentration of selected PAHs i.e. phenanthrene, pyrene and benzo(a)pyrene in soil was determined using HPLC. Plant parameters such as root/shoot length and dry mass were compared after harvest. Concentrations of PAHs were also determined in plant material and in soils after harvesting. Result showed that initial concentration of phenanthrene was significantly different from final concentration in treatments in which soil was spiked with diesel. Initial and final concentration of pyrene in soil was also significantly different from each other in two treatments in which soil was spiked with 1% diesel. Pyrene concentration was significantly different in roots and shoots of plants while benzo(a)pyrene concentration in treatments in which soil was spiked with diesel was also significantly different from roots and shoots. Phenanthrene was less extracted by the plant in all the treatments and it was present in higher concentration in soil as compared to plant. Our results indicate that vetiver grass has effectively removed PAHs from soil consequently a significantly higher root and shoot uptake of PAHs was observed than control treatments. Study concludes Vetiveria zizanioides as potentially promising plant specie for the removal

The use of vetivers in coastal engineering

NARCIS (Netherlands)

Verhagen, H.J.; Jaspers Focks, D.J.; Algera, A.; Vu, M.A.

2008-01-01

Vetiver grass is a sustainable and innovative solution for the protection of banks. It is shown that Vetiver grass is able to establish a full-stop of bank erosion caused by rapid drawdown. Therefore it provides us with strong indications that it is highly suitable as an anti-erosion measure. A

Greenhouse study on the phytoremediation potential of vetiver grass, Chrysopogon zizanioides L., in arsenic-contaminated soils.

Science.gov (United States)

Datta, Rupali; Quispe, Mario A; Sarkar, Dibyendu

2011-01-01

The purpose of this greenhouse study was to assess the capacity of vetiver grass to accumulate arsenic from pesticide-contaminated soils of varying physico-chemical properties. Results indicate that vetiver is capable of tolerating moderate levels of arsenic up to 225 mg/kg. Plant growth and arsenic removal efficiency was strongly influenced by soil properties. Arsenic removal was highest (10.6%) in Millhopper soil contaminated with 45 mg/kg arsenic, which decreased to 4.5 and 0.6% at 225 and 450 mg/kg, respectively. High biomass, widespread root system and environmental tolerance make this plant an attractive choice for the remediation of soils contaminated with moderate levels of arsenic.

A greenhouse study on arsenic remediation potential of Vetiver grass (Vetiveria Zizanioides) as a function of soil physico-chemical properties

Science.gov (United States)

Quispe, M. A.; Datta, R.; Sarkar, D.; Sharma, S.

2006-05-01

arsenic (0, 45, 225 and 450 mgAs/kg soil). Vetiver plants were grown for a period of 4 months, harvested at two time periods (2 months and 4 months). Plant biomass, shoot and root lengths, arsenic accumulation in roots and shoots were measured. Total and exchangeable arsenic was correlated with phyto-extracted arsenic. In addition, 3 important antioxidant enzyme activities were measured in root and shoot tissues, viz., Superoxide dismutase (SOD), catalase (CAT), and glutathione peroxidases (GPx) to evaluate the effect of arsenic stress on vetiver plants. This study will provide information on the capability of vetiver grass to remediate sites contaminated with arsenic as a function of soil physico- chemical properties.

Potentiation of antimalarial activity of arteether in combination with Vetiver root extract.

Science.gov (United States)

Dhawan, Sangeeta; Gunjan, Sarika; Pal, Anirban; Tripathi, Renu

2016-05-01

In malaria, development of resistance towards artemisinin derivatives has urged the need for new drugs or new drug combinations to tackle the drug resistant malaria. We studied the fresh root extract of Vetiver zizanioides (Linn.) Nash (VET) with a CDRI-CIMAP antimalarial α/β arteether (ART) together for their antimalarial potential. Our results showed additive to synergistic antimalarial activity of VET and ART with sum fractional inhibitory concentrations Σ FICs 1.02 ± 0.24 and 1.12 ± 0.32 for chloroquine sensitive (CQS) and chloroquine resistant (CQR) strain of Plasmodium falciparum (William H. Welch), respectively. Further, these combinations were explored against multidrug resistant rodent malaria parasite i.e. P. yoelii nigeriensis. Analysis of in vivo interaction of ART and VET showed that 10 mg/kg x 5 days of ART with 1000 mg/kg of VET x 5 days cured 100% mice infected with MDR parasite, while the same dose of ART could produce only up to 30% cure and VET fraction was not curative at all. Synergism/additiveness, found between VET and ART is reported for the first time. The curative dose of ART in the combination was reduced to its one fourth, and thus limits the side effects, if any. Although antimalarial potential of ART was enhanced by VET, action mechanism of later needs to be elucidated in detail.

A preliminary study to design a floating treatment wetland for remediating acid mine drainage-impacted water using vetiver grass (Chrysopogon zizanioides).

Science.gov (United States)

Kiiskila, Jeffrey D; Sarkar, Dibyendu; Feuerstein, Kailey A; Datta, Rupali

2017-12-01

Acid mine drainage (AMD) is extremely acidic, sulfate-rich effluent from abandoned or active mine sites that also contain elevated levels of heavy metals. Untreated AMD can contaminate surface and groundwater and pose severe ecological risk. Both active and passive methods have been developed for AMD treatment consisting of abiotic and biological techniques. Abiotic techniques are expensive and can create large amounts of secondary wastes. Passive biological treatment mainly consists of aerobic or anaerobic constructed wetlands. While aerobic wetlands are economical, they are not effective if the pH of the AMD is systems declines overtime and requires continuous maintenance. Our objective is to develop an alternative, low-cost, and sustainable floating wetland treatment (FWT) system for AMD for the abandoned Tab-Simco coal mining site in Illinois using vetiver grass (Chrysopogon zizanioides). Tab-Simco AMD is highly acidic, with mean pH value of 2.64, and contains high levels of sulfate and metals. A greenhouse study was performed for a 30-day period in order to screen and optimize the necessary parameters to design a FWT system. Water quality and plant growth parameters were continuously monitored. Results show significant SO 4 2- removal, resulting in increased pH, particularly at higher planting densities. Vetiver also helped in metal removal; high amounts of Fe, Zn, and Cu were removed, with relatively lower amounts of Pb, Al, and Ni. Iron plaque formation on the root was observed, which increased metal stabilization in root and lowered root to shoot metal translocation. Vetiver was tolerant of AMD, showing minimal change in biomass and plant growth. Results obtained are encouraging, and a large scale mesocosm study is now in progress, as the next step to develop the vetiver-based system for AMD treatment.

Absorção e distribuição de chumbo em plantas devetiver, jureminha e algaroba Absorption and distribution of lead in vetiver, mimosa and mesquite plants

Directory of Open Access Journals (Sweden)

Jailson do Carmo Alves

2008-06-01

, and studies concerning heavy metal tolerance, absorption and distribution in plants are essential for the success of such programs. This study was carried out to evaluate the tolerance, absorption and distribution of lead (Pb in vetiver grass [Vetiveria zizanioides (L. Nash], mimosa [Desmanthus virgatus (L. Willd] and mesquite trees [Prosopis juliflora (SW DC] subjected to increasing lead doses in solution. The experiment was conducted under a screenhouse, at the DSER/CCA/UFPB, Areia-PB, Brazil. The species were grown in nutrient solution containing increasing Pb levels (0, 50, 100 and 200 mg L-1 during a 45-day exposure period. An entirely randomized split-plot design was used with three replicates. The main plot was represented by the plant species and the subplot by Pb levels. The increased Pb levels caused significant reductions of dry mass of the root, shoot and whole plant (root + shoot in the three species under study. Based on critical toxicity levels, the tolerance of vetiver to Pb contamination was higher than in the other species. In vetiver and mesquite plants, the roots were the component most sensitive to Pb contamination, whereas a similar response to Pb by all plant components was observed for mimosa. Total Pb concentrations and content in plant compartments were significantly affected by the increasing Pb levels in solution, and a higher accumulation of this element was observed in the roots of the three species under study. The highest Pb concentration and content were found in all compartments of vetiver, which suggests a high potential of this grass for phytoremediation of Pb-contaminated areas.

Phytoremediation Potential of Vetiver System Technology for Improving the Quality of Palm Oil Mill Effluent

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Negisa Darajeh

2014-01-01

Full Text Available Palm oil mill effluent (POME, a pollutant produced by the palm oil industry, was treated by the Vetiver system technology (VST. This technology was applied for the first time to treat POME in order to decrease biochemical oxygen demand (BOD and chemical oxygen demand (COD. In this study, two different concentrations of POME (low and high were treated with Vetiver plants for 2 weeks. The results showed that Vetiver was able to reduce the BOD up to 90% in low concentration POME and 60% in high concentration POME, while control sets (without plant only was able to reduce 15% of BOD. The COD reduction was 94% in low concentration POME and 39% in high concentration POME, while control just shows reduction of 12%. Morphologically, maximum root and shoot lengths were 70 cm, the number of tillers and leaves was 344 and 86, and biomass production was 4.1 kg m−2. These results showed that VST was effective in reducing BOD and COD in POME. The treatment in low concentration was superior to the high concentration. Furthermore, biomass of plant can be considered as a promising raw material for biofuel production while high amount of biomass was generated in low concentration of POME.

Vetiver grass is capable of removing TNT from soil in the presence of urea

Energy Technology Data Exchange (ETDEWEB)

Das, Padmini [Department of Earth and Environmental Studies, Montclair State University, One Normal Avenue, Montclair, NJ 07104 (United States); Datta, Rupali [Department of Biological Sciences, Michigan Technological University, Houghton, MI 49931 (United States); Makris, Konstantinos C., E-mail: konstantinos.makris@cut.ac.c [Cyprus International Institute for Environmental and Public Health in Association with Harvard School Of Public Health, Cyprus University of Technology, Limassol (Cyprus); Sarkar, Dibyendu [Department of Earth and Environmental Studies, Montclair State University, One Normal Avenue, Montclair, NJ 07104 (United States)

2010-05-15

The high affinity of vetiver grass for 2,4,6 trinitrotoluene (TNT) and the catalytic effectiveness of urea in enhancing plant uptake of TNT in hydroponic media we earlier demonstrated were further illustrated in this soil-pot-experiment. Complete removal of TNT in urea-treated soil was accomplished by vetiver at the low initial soil-TNT concentration (40 mg kg{sup -1}), masking the effect of urea. Doubling the initial TNT concentration (80 mg kg{sup -1}) significantly (p < 0.002) increased TNT removal by vetiver, in the presence of urea. Without vetiver grass, no significant (p = 0.475) change in the soil-TNT concentrations was observed over a period of 48 days, suggesting that natural attenuation of soil TNT could not explain the documented TNT disappearance from soil. - Vetiver grass in the presence of urea effectively removes TNT from soil.

Efficacy of vetiver oil and nootkatone as soil barriers against Formosan subterranean termite (Isoptera: Rhinotermitidae).

Science.gov (United States)

Maistrello, L; Henderson, G; Laine, R A

2001-12-01

Vetiver oil and its components nootkatone and cedrene were assessed as sand treatments for their efficacy to disrupt food recruitment by Coptotermes formosanus Shiraki. Termites were required to tunnel through sand treated with vetiver oil, nootkatone, cedrene, or untreated sand to reach a food source. Results showed that sand treated with vetiver oil or nootkatone disrupted termite tunneling behavior. As a consequence, after 21 d, wood consumption and termite survival were significantly lower compared with cedrene-treated or untreated sand treatments. Sand treated with vetiver oil or nootkatone at 100 microg/g substrate were effective barriers to termites.

High uptake of 2,4,6-trinitrotoluene by vetiver grass - Potential for phytoremediation?

International Nuclear Information System (INIS)

Makris, Konstantinos C.; Shakya, Kabindra M.; Datta, Rupali; Sarkar, Dibyendu; Pachanoor, Devanand

2007-01-01

2,4,6-Trinitrotoluene (TNT) is a potent mutagen, and a Group C human carcinogen that has been widely used to produce munitions and explosives. Vast areas that have been previously used as ranges, munition burning, and open detonation sites are heavily contaminated with TNT. Conventional remediation activities in such sites are expensive and damaging to the ecosystem. Phytoremediation offers a cost-effective, environment-friendly solution, utilizing plants to extract TNT from contaminated soil. We investigated the potential use of vetiver grass (Vetiveria zizanioides) to effectively remove TNT from contaminated solutions. Vetiver grass plants were grown in hydroponic systems containing 40 mg TNT L -1 for 8 d. Aqueous concentrations of TNT reached the method detection limit (∼1 μg L -1 ) within the 8-d period, demonstrating high affinity of vetiver for TNT, without any visible toxic effects. Results from this preliminary hydroponic study are encouraging, but in need of verification using TNT-contaminated soils. - Vetiver grass demonstrates ability to absorb TNT in aqueous media

Kajian Rumput Vetiver Sebagai Pengaman Lereng Secara Berkelanjutan

Directory of Open Access Journals (Sweden)

Susilawati Susilawati

2016-12-01

Full Text Available Flores is the island in the NTT province, which has a row of volcanoes, with the mountainous topography. Transportation is state road, along the coast with high cliffs on the other side. That often causes problems during the rainy season as several landslides. Various methods are used to overcome this landslide. Studies on vetiver grass as slope protection done to secure the slopes on a sustainable basis. First, an evaluation done for the slope construction along the slope safety from Nangaroro to Aegela, which are using vetiver grass as a safety slopes in addition to other security structures. It is also done for the same job of the road from Ende to Nangaroro and Ende-Detusoko. This study covers the technical aspects, ecological, construction and sustainability of the infrastructure that has been built. Furthermore, it is done the literature study to find more appropriate method, environmentally friendly and sustainable in securing these slopes problematic. From the literature studies and the field survey done, it can be concluded and recommended several models of eco-friendly structural design of vetiver grass and geotextile for slope protection, which is based on technical-meet standard strength, ecologically-friendly environment, locally-developed local wisdom, so it is easy to construct.

Cultivation of vetiver in saline tailings contaminated with arsenic under phosphorus doses

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Lorena A. de O. P. Guimarães

Full Text Available ABSTRACT The processing of gold ores exploited in Paracatu, MG, generates tailings that are challenging for revegetation, mainly because of the high content of arsenic and salinity. Aiming at the revegetation of the area of disposal of these tailings, the objective of this study was to evaluate the effects of phosphorus doses on vetiver plants (Chrysopogon zizanioides and on the planting substrate, which consisted of tailings from the processing of ore named B1, exploited in Paracatu, with water restriction. Vetiver was grown for four months in the substrate under doses of 0, 140, 280, 560 and 1280 mg kg-1 of P2O5. Increasing doses of phosphorus improved the chemical characteristics of the substrate. However, the highest dose (1280 mg kg-1 P2O5 resulted in higher toxicity of arsenic for the plants. Under the evaluated conditions, the dose of 560 mg kg-1 of P2O5 is the most suitable for the fertilization of vetiver and, therefore, also for the revegetation of the substrate. Vetiver survives under low availability of water in the tailings.

Effect of Vetiver Grass on Reduction of Soil Salinity and Some Minerals

OpenAIRE

Masoud Noshadi; Hosein Valizadeh

2017-01-01

Introduction: Soil salinity is one of the major limitations of agriculture in the warm and dry regions. Soil sodification also damages soil structure and reduce soil permeability. Therefore, control of soil salinity and sodium is very important. Vetiver grass has unique characteristics that can be useful in phytoremediation. Materials and Methods: This research was conducted to investigate the effects of irrigation with different salinities on vetiver grass and the effects of this plant o...

Is vetiver grass of interest for the remediation of Cu and Cd to protect marketing gardens in Burkina Faso?

Science.gov (United States)

Ondo Zue Abaga, Norbert; Dousset, Sylvie; Mbengue, Saliou; Munier-Lamy, Colette

2014-10-01

In Burkina-Faso, urban vegetable agriculture is often characterized by urban solid waste fertilizer inputs containing heavy metals such as Cu and Cd. Thus, the relevance of surrounding urban vegetable plots with vetiver hedges to reduce environmental pollution by Cu and Cd was investigated by adsorption studies and pot experiments. Vetiver biomass, its metal contents and, its total and MgCl2 extractable soil metals were monitored over 6months in the presence of a mixture of metal at two concentrations: 2-10 and 100-500mgkg(-1), for Cd and Cu, respectively. The Freundlich adsorption coefficient (Kf) values increased after vetiver growth and were significantly higher for vertisol than for lixisol. After 6months, the vetiver that was grown on lixisol accumulated more metal, increasing up to 4635mgkg(-1) for Cu and to 21.8mgkg(-1) for Cd, than did the vetiver that was grown on vertisol, increasing up to 1534mgkg(-1) for Cu and to 7.2mgkg(-1) for Cd. The metal bioconcentration factor, which was significantly higher for Cd, increased with the applied concentration and ranged from 1.6 to 14 for Cu and from 2.3 to 22 for Cd. Additionally, the translocation factors were higher for Cd (0.38-7.3) than for Cu (0.07-2.6), and the translocation was easiest from lixisol than from vertisol. Thus our results demonstrate the ability of vetiver for Cu and Cd phytoremediation in Burkina Faso soils. Nevertheless, these results should be confirmed across the field to advocate the establishment of vetiver hedges. Copyright © 2014 Elsevier Ltd. All rights reserved.

Environmental performances of coproducts. Application of Claiming-Based Allocation models to straw and vetiver biorefineries in an Indian context.

Science.gov (United States)

Gnansounou, Edgard; Raman, Jegannathan Kenthorai

2018-04-24

Among the renewables, non-food and wastelands based biofuels are essential for the transport sector to achieve country's climate mitigation targets. With the growing interest in biorefineries, setting policy requirements for other coproducts along with biofuels is necessary to improve the products portfolio of biorefinery, increase the bioproducts perception by the consumers and push the technology forward. Towards this context, Claiming-Based allocation models were used in comparative life cycle assessment of multiple products from wheat straw biorefinery and vetiver biorefinery. Vetiver biorefinery shows promising Greenhouse gas emission savings (181-213%) compared to the common crop based lignocellulose (wheat straw) biorefinery. Assistance of Claiming-Based Allocation models favors to find out the affordable allocation limit (0-80%) among the coproducts in order to achieve the individual prospective policy targets. Such models show promising application in multiproduct life cycle assessment studies where appropriate allocation is challenging to achieve the individual products emission subject to policy targets. Copyright © 2018 Elsevier Ltd. All rights reserved.

Uptake of 2,4-bis(Isopropylamino)-6-methylthio-s-triazine by Vetiver Grass (Chrysopogon zizanioides L.) from Hydroponic Media.

Science.gov (United States)

Sun, S X; Li, Y M; Zheng, Y; Hua, Y; Datta, R; Dan, Y M; Lv, P; Sarkar, D

2016-04-01

2,4-bis(Isopropylamino)-6-methylthio-s-triazine (prometryn) poses a risk to aquatic environments in several countries, including China, where its use is widespread, particularly due to its chemical stability and biological toxicity. Vetiver grass (Chrysopogon zizanioides L.) was tested for its potential for phytoremediation of prometryn. Vetiver grass was grown in hydroponic media in a greenhouse, in the presence of prometryn, with appropriate controls. Plant uptake and removal of prometryn from the media were monitored for a period of 67 days. The results showed that the removal of the prometryn in the media was expedited by vetiver grass. The removal half-life (t1/2) was shortened by 11.5 days. Prometryn removal followed first-order kinetics (Ct = 1.8070e(-0.0601t)). This study demonstrated the potential of vetiver grass for the phytoremediation for prometryn.

Comparative effects of vetiver oil, nootkatone and disodium octaborate tetrahydrate on Coptotermes formosanus and its symbiotic fauna.

Science.gov (United States)

Maistrello, Lara; Henderson, Gregg; Laine, Roger A

2003-01-01

The potential of vetiver oil and nootkatone as wood treatments against Coptotermes formosanus Shiraki was examined by assessing the effects on termite tunneling, feeding activity and survival, and the consequences on the symbiont protozoa responsible for wood digestion. Comparisons were made with non-treated wood (control), wood treated with the borate compound Tim-Bor (a commonly used lumber preservative) and absence of a food source (starved termites), using choice and no-choice tests. All wood slices were prepared at the same time using a 10 g liter(-1) solution of each substance and were tested in four different sessions over one year to investigate longevity of the effects. Termites had to tunnel through sand to exploit the food sources, consisting of two wood slices, placed on opposite sides of the experimental enclosure. No-choice tests showed that in the presence of vetiver oil or nootkatone, tunneling activity was always the lowest; wood consumption, termite survival and flagellate numbers and species distribution were significantly different from the control and similar to the results obtained for starved termites and with Tim-Bor-treated wood. Nootkatone negatively affected termites for 12 months and was longer lasting than vetiver oil. In choice tests, when vetiver oil or nootkatone were present, termites exhibited a significant preference for non-treated wood. Our results confirmed both the toxicity and absence of repellency of Tim-Bor. Vetiver oil and especially nootkatone affected Formosan subterranean termites and their protozoa, acting as arrestants, repellents and feeding deterrents, and represent a promising natural alternative for the control of this invasive pest.

Fitoremediasi Tanaman Akar Wangi (Vetiver zizanioides Terhadap Tanah Tercemar Logam Kadmium (Cd Pada Lahan TPA Tamangapa Antang Makassar

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Alfia Patandungan

2016-07-01

Full Text Available One example of soil contamination on land landfill is (TPA Makassar. The method of prevention is phytoremediation of the contaminated land. This study examined the ability of the plant will vetiver (Vetiver zizanioides in reducing the levels of Cd in the soil. To increase the potential of these plants to remediate Cd, the soil where the plants grow is combined with compost in which bacteria within the compost might improve the absorption of Cd. Planting medium used is pure soil and compost from Tamangapa Makassar. Research carried out for 28 days with a variation of the study. The composition of the media that the contaminated soil (TT metal kadmium  (Cd  and compost (K with a ratio of 100% (TT: 0 K, 5 (TT: 1 (K, 4.5 (TT: 1.5 (K and 4 (TT: 2 (K. The results shwed that vetiver plants were able to absorb Cd of 0,298 mg/Kg so it can be concluded that the composition of the planting medium with a combination of compost less significant because the combination of the contaminated soil with compost are less precise in  helping vetiver plants accumulate or reduce metal pollution cadmium in  contaminated soil Tamangapa Antang Makassar.

A review on moringa tree and vetiver grass - Potential biorefinery feedstocks.

Science.gov (United States)

Raman, Jegannathan Kenthorai; Alves, Catarina M; Gnansounou, Edgard

2018-02-01

Plants and derivatives have been explored for unlimited purposes by mankind, from crop cultivation for providing food and animal feed, to the use for cosmetics, therapeutics and energy. Moringa tree and vetiver grass features, capabilities and applications were explored through a literature review. The suitability of these plants for the bioenergy industry products is evidenced, namely for bioethanol, biogas and biodiesel, given the lignocellulosic biomass content of these plants and characteristics of moringa seed oil. In addition, moringa leaves and pods are an important source for food and animal feed industries due to their high nutrient value. Thus, the co-cultivation of moringa and vetiver could provide energy and food security, and contribute to more sustainable agricultural practices and for the development of rural areas. Policymakers, institutions and scientific community must engage to promote the cultivation of multipurpose crops to cope with energy and food industries competition for biomass. Copyright © 2017 Elsevier Ltd. All rights reserved.

Phytoextraction of lead from firing range soils with Vetiver grass

Science.gov (United States)

E. W. Wilde; R. L. Brigmon; D. L. Dunn; M. A. Heitkamp; D. C. Dagnan

2007-01-01

Vetiver grass (Vetiveria zizanoides) along with soil amendments were evaluated for phytoextraction of lead and other metals (zinc, copper, and iron) from the soil of an active firing range at the Savannah River Site, SC. Lead-contaminated soil (300-4,500 ppm/kg) was collected, dried, placed in pots, fertilized, and used as a medium for growing...

Avoidance behavior to essential oils by Anopheles minimus, a malaria vector in Thailand

Science.gov (United States)

Excito-repellency tests were used to characterize behavioral responses of laboratory colonized Anopheles minimus, a malaria vector in Thailand, using four essential oils, citronella (Cymbopogom nadus), hairy basil (Ocimum americanum), sweet basil (Ocimum basilicum), vetiver (Vetiveria zizanioides), ...

MAIL1 is essential for development of the primary root but not of anchor roots.

Science.gov (United States)

Ühlken, Christine; Hoth, Stefan; Weingartner, Magdalena

2014-01-01

MAIN-LIKE1 (MAIL1) is a ubiquitously expressed nuclear protein, which has a crucial function during root development. We have recently described loss of function mutants for MAIL1, in which the organization and function of the primary root meristem is lost soon after germination. Moreover cell differentiation is impaired resulting in primary root growth arrest soon after emergence. Here we show that mail1 mutants form several anchor roots from the hypocotyl to root junction. These anchor roots show similar defects in the organization of the stem cell niche as the primary root. In contrast, differentiation processes are not impaired and thus anchor roots seem to be able to compensate for the loss of primary root function. Our data show that MAIL1 is essential for specification of cell fate in the primary root but not in anchor roots.

Antioxidant Activity of Essential Oil and Extracts of Valeriana jatamansi Roots

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Sakshima Thusoo

2014-01-01

Full Text Available Valeriana jatamansi is an indigenous medicinal plant used in the treatment of a number of diseases. In the present study, chemical composition of the essential oil was determined by GC-MS. Seven major components were identified in Valeriana jatamansi essential oil, namely, β-vatirenene, β-patchoulene, dehydroaromadendrene, β-gurjunene, patchoulic alcohol, β-guaiene, and α-muurolene. Methanolic, aqueous, and chloroform extracts of Valeriana jatamansi roots were also prepared and analyzed for their polyphenols and flavonoid content. Antioxidant activity of essential oil and different extracts of Valeriana jatamansi roots was determined by DPPH radical scavenging and chelation power assay. A linear correlation has been obtained by comparing the antioxidant activity and polyphenols and flavonoid content of the extracts. Results indicated that antioxidant activity of methanolic extract could be attributed to the presence of rich amount of polyphenols and flavonoid. Essential oil of Valeriana jatamansi roots showed moderate antioxidant activity.

The Essential Oils of Rhaponticum carthamoides Hairy Roots and Roots of Soil-Grown Plants: Chemical Composition and Antimicrobial, Anti-Inflammatory, and Antioxidant Activities

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Rijo, Patrícia; Garcia, Catarina; Kalemba, Danuta; Toma, Monika; Szemraj, Janusz; Pytel, Dariusz; Śliwiński, Tomasz

2016-01-01

The essential oils were isolated by hydrodistillation from the hairy roots (HR) and roots of soil-grown plants (SGR) of Rhaponticum carthamoides and were analyzed by GC-MS method. In the both essential oils 62 compounds were identified. The root essential oils showed the differences in the qualitative and quantitative composition. The sesquiterpene hydrocarbons (55–62%) dominated in both essential oils. The major compounds of HR essential oil were cyperene, 13-norcypera-1(5),11(12)-diene, and cadalene while aplotaxene, nardosina-1(10),11-diene, and dauca-4(11),8-diene dominated in SGR essential oil. Both essential oils showed antibacterial activity especially against Enterococcus faecalis (ATCC 29212) and Pseudomonas aeruginosa (ATCC 27853) (MIC value = 125 µg/mL). HR and SGR essential oils also decreased the expression of IL-1β, IL-6, and TNF-α and the ROS level in LPS-treatment astrocytes. This is the first report to describe the chemical composition of R. carthamoides essential oil from hairy roots, its protective effect against LPS-induced inflammation and ROS production in astrocytes, and its antimicrobial potential. The results show that R. carthamoides hairy roots may be a valuable source of the essential oil and may be an alternative to the roots of soil-grown plants. PMID:28074117

The Essential Oils of Rhaponticum carthamoides Hairy Roots and Roots of Soil-Grown Plants: Chemical Composition and Antimicrobial, Anti-Inflammatory, and Antioxidant Activities.

Science.gov (United States)

Skała, Ewa; Rijo, Patrícia; Garcia, Catarina; Sitarek, Przemysław; Kalemba, Danuta; Toma, Monika; Szemraj, Janusz; Pytel, Dariusz; Wysokińska, Halina; Śliwiński, Tomasz

2016-01-01

The essential oils were isolated by hydrodistillation from the hairy roots (HR) and roots of soil-grown plants (SGR) of Rhaponticum carthamoides and were analyzed by GC-MS method. In the both essential oils 62 compounds were identified. The root essential oils showed the differences in the qualitative and quantitative composition. The sesquiterpene hydrocarbons (55-62%) dominated in both essential oils. The major compounds of HR essential oil were cyperene, 13-norcypera-1(5),11(12)-diene, and cadalene while aplotaxene, nardosina-1(10),11-diene, and dauca-4(11),8-diene dominated in SGR essential oil. Both essential oils showed antibacterial activity especially against Enterococcus faecalis (ATCC 29212) and Pseudomonas aeruginosa (ATCC 27853) (MIC value = 125  µ g/mL). HR and SGR essential oils also decreased the expression of IL-1 β , IL-6, and TNF- α and the ROS level in LPS-treatment astrocytes. This is the first report to describe the chemical composition of R. carthamoides essential oil from hairy roots, its protective effect against LPS-induced inflammation and ROS production in astrocytes, and its antimicrobial potential. The results show that R. carthamoides hairy roots may be a valuable source of the essential oil and may be an alternative to the roots of soil-grown plants.

Bioengineering Technology to Control River Soil Erosion using Vetiver (Vetiveria Zizaniodes)

Science.gov (United States)

Sriwati, M.; Pallu, S.; Selintung, M.; Lopa, R.

2018-04-01

Erosion is the action of surface processes (such as water flow or wind) that removes soil, rock or dissolved material from one location on the earth’s crust, and then transport it away to another location. Bioengineering is an attempt to maximise the use of vegetation components along riverbanks to cope with landslides and erosion of river cliffs and another riverbank damage. This study aims to analyze the bioengineering of Vetiver as a surface layer for soil erosion control using slope of 100, 200, and 300. This study is conducted with 3 variations of rain intensity (I), at 103 mm/hour, 107 mm/hour, and 130 mm/hour by using rainfall simulator tool. In addition, the USLE (Universal Soil Loss Equation) method is used in order to measure the rate of soil erosion. In this study, there are few USLE model parameters were used such as rainfall erosivity factor, soil erodibility factor, length-loss slope and stepness factor, cover management factor, and support practise factor. The results demonstrated that average of reduction of erosion rate using Vetiver, under 3 various rainfalls, namely rainfall intensity 103 mm/hr had reduced 84.971%, rainfall intensity 107 mm/hr had reduced 86.583 %, rainfall intensity 130 mm/hr had reduced 65.851%.

Evaluation of DEET and eight essential oils for repellency against nymphs of the lone star tick, Amblyomma americanum (Acari: Ixodidae)

Science.gov (United States)

Eight commercially available essential oils (oregano, clove, thyme, vetiver, sandalwood, cinnamon, cedarwood, and peppermint) were evaluated for repellency against host-seeking nymphs of the lone star tick, Amblyomma americanum. Concentration- repellency response was established using the vertical ...

INVESTIGATION OF THE ESSENTIAL OIL OF EUROPEAN SPRUCE ROOTS (LAT. PICEA ABIES H. KARST, PINACEAE FAMILY

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D. K. Guljaev

2017-01-01

Full Text Available The article is devoted to the study of essential oil extracted from the roots of European Spruce (Lat. Picea abies.The aim is to establish the component composition of the essential oil and the peculiarities of its localization in the roots of European Spruce.Materials and methods. The objects of the study are the roots of European Spruce not longer than two centimeters in diameter, peeled and dried. The study of their anatomical signs was carried out according to the methodology of the State Pharmacopoeia of the Russian Federation (the XIII-th edition with the”Biomed-6” microscope using the DCN 510 nozzle. The essential oil was obtained by hydrodistillation of European Spruce roots using the device of Clevenger by Method 2 of the State Pharmacopoeia of the Russian Federation (the XIII-th edition. The component composition of the essential oil was determined by an Agilent 7890A gas-liquid chromatograph with an Agilent 5975C mass-selective detector.Results and discussion. As a result of the microscopic examination of the roots of European Spruce, it was established that the essential oil is localized mainly in resinous courses located in the wood of the root. In the central part of the root, resin moves are of a larger diameter. More than 18 components were found in the essential oil of European Spruce roots, 14 of them were identifi ed. The main component of the essential oil is sesquiterpene lactone – tanbergol.Conclusion. The essential oil of European Spruce roots has a unique component composition that includes components not characteristic for the essential oil of spruce greenery. The difference in the component composition indicates the difference in properties and pharmacological activity. Further studies are of interest for determining the prospects of using European Spruce roots.

Root-cause analysis - An essential culture at Davis-Besse

International Nuclear Information System (INIS)

Garver, R.G.; Gerren, D.W.; Jain, S.C.

1990-01-01

An ingrained cultural attitude toward diligent pursuit of the root causes of plant anomalies and equipment malfunctions, and effective implementation of corrective actions is essential to achieve and maintain desired safety and performance standards at a nuclear power plant. At the Davis-Besse nuclear power station, a demonstrated management commitment to these actions, coupled with an effective root-cause training program has made root-cause analysis an important engineering function. The dedication of engineering and maintenance department resources to problem investigation and troubleshooting, root-cause analysis, and corrective action implementation has eliminated several complex operational problems. Reactor trips, unplanned challenges to safety systems, and unplanned plant transients have been significantly reduced as a result. The benefits of these plant performance improvements far outweigh the expense of these resources

Application of Raman spectroscopy for direct analysis of Carlina acanthifolia subsp. utzka root essential oil.

Science.gov (United States)

Strzemski, Maciej; Wójciak-Kosior, Magdalena; Sowa, Ireneusz; Agacka-Mołdoch, Monika; Drączkowski, Piotr; Matosiuk, Dariusz; Kurach, Łukasz; Kocjan, Ryszard; Dresler, Sławomir

2017-11-01

Carlina genus plants e.g. Carlina acanthifolia subsp. utzka have been still used in folk medicine of many European countries and its biological activity is mostly associated with root essential oils. In the present paper, Raman spectroscopy (RS) was applied for the first time for evaluation of essential oil distribution in root of C. acnthifolia subsp. utzka and identification of root structures containing the essential oil. Furthermore, RS technique was applied to assess chemical stability of oil during drying of plant material or distillation process. Gas chromatography-mass spectrometry was used for qualitative and quantitative analysis of the essential oil. The identity of compounds was confirmed using Raman, ATR-IR and NMR spectroscopy. Carlina oxide was found to be the main component of the oil (98.96% ± 0.15). The spectroscopic study showed the high stability of essential oil and Raman distribution analysis indicated that the oil reservoirs were localized mostly in the structures of outer layer of the root while the inner part showed nearly no signal assigned to the oil. Raman spectroscopy technique enabled rapid, non-destructive direct analysis of plant material with minimal sample preparation and allowed straightforward, unambiguous identification of the essential oil in the sample. Copyright © 2017. Published by Elsevier B.V.

Essential oil constituents of the aerial parts and root of Cymbocarpum anethoides (Apiaceae) from Iran.

Science.gov (United States)

Nasiri, N; Shamkhani, H; Ghelichpour, Z; Mohammadi, M A; Sonboli, A

2017-04-01

The essential oils obtained by hydrodistillation from aerial parts at different growing stages and root of Cymbocarpum anethoides DC., from Iran were investigated. The oils were analysed by GC-FID and GC-MS. Forty-five, 52, 40 and 36 components were identified in the essential oils of aerial parts (vegetative, flowering and fruit) and root representing of the 99.2, 99.0, 99.8 and 99.6% of the total oils, respectively. The essential oil of the aerial parts of the plant in vegetative stage was dominated by n-decanal (36.5%) and n-dodecanal (25.3%). n-Decanal (35.8%) and 2E-decenal (25.1%) were the main constituents of the plant oil in flowering stage whereas 2E-decenal (32.1%) and 2E-dodecenal (21.5%) were characterised as the main components of the plant oil in fruit stage. In the essential oil of root, the major identified components were 2-dodecenoic acid (29.8%) and 2E-Dodecenol (12.7%).

Comparative Study of Root, Stalk and Leaf Essential Oils of ...

African Journals Online (AJOL)

MBI

2017-03-03

Mar 3, 2017 ... ABSTRACT. The root, stalk and leaf essential oils of Cymbopogon citratus grown in Kaduna, North Central Nigeria were extracted separately by hydrodistillation and characterized by GC-MS. The chemical composition analysis by. GC-MS of the oils allowed the identification of 34, 26 and 16 compounds ...

Phytochemicals and antimicrobial activities of aerial parts and roots of Trigonella tehranica L. essential oils

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F. Kiashi

2017-11-01

Full Text Available Background and objectives: Trigonella tehranica (Leguminosae is an indigenous plant in northern regions of Iran. There were many reports about antimicrobial activity of other specious of this genus; therefore, the aim of present study was investigation of chemical compounds and antimicrobial activities of T. tehranica essential oils for the first time. Methods: The essential oils of aerial parts and roots of T. tehranica from Taleqan, Alborz Province, Iran were obtained by hydro-distillation and analyzed by GC-MS. Antimicrobial activities of essential oils were tested against some Gram-positive bacteria (Bacillus subtilis, Staphylococcus epidermidis and Staphylococcus aureus, Gram-negative bacteria (Salmonella paratyphi-A, Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumonia, Shigella dysenteriae and Proteus vulgarisis and fungi (Aspergillus brasiliensis, Aspergillus niger and Candidia albicans via disc diffusion method and minimal inhibitory concentrations (MICs were reporte. Results: The abundant compounds of aerial parts essential oil were n-hexadecanoic acid (20.84%, camphane (11.45% and neo-menthol (5.05%. The major volatiles of roots essential oil were hexanal (14.83%, butane, 2-methyl (13.39% and 1-pentene (12.80%. The roots essential oil showed the most antimicrobial activitiy on Bacillus stubtilis (inhibition zone (IZ equal to 21 mm and the aerial parts essential oil demonstrated the most effects on Bacillus stubtilis (IZ as16 mm and Candida albicans (IZ as 20 mm. Conclusion: Although essential oils of T. tehranica were effective on many examined microorganisms, their antifungal activity was higher significantly.

Characterization of essential oil distribution in the root cross-section of Valeriana officinalis L. s.l. by using histological imaging techniques.

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Penzkofer, Michael; Baron, Andrea; Naumann, Annette; Krähmer, Andrea; Schulz, Hartwig; Heuberger, Heidi

2018-01-01

The essential oil is an important compound of the root and rhizome of medicinally used valerian ( Valeriana officinalis L. s.l.), with a stated minimum content in the European pharmacopoeia. The essential oil is located in droplets, of which the position and distribution in the total root cross-section of different valerian varieties, root thicknesses and root horizons are determined in this study using an adapted fluorescence-microscopy and automatic imaging analysis method. The study was initiated by the following facts:A probable negative correlation between essential oil content and root thickness in selected single plants (elites), observed during the breeding of coarsely rooted valerian with high oil content.Higher essential oil content after careful hand-harvest and processing of the roots. In preliminary tests, the existence of oil containing droplets in the outer and inner regions of the valerian roots was confirmed by histological techniques and light-microscopy, as well as Fourier-transform infrared spectroscopy. Based on this, fluorescence-microscopy followed by image analysis of entire root cross-sections, showed that a large number of oil droplets (on average 43% of total oil droplets) are located close to the root surface. The remaining oil droplets are located in the inner regions (parenchyma) and showed varying density gradients from the inner to the outer regions depending on genotype, root thickness and harvesting depth. Fluorescence-microscopy is suitable to evaluate prevalence and distribution of essential oil droplets of valerian in entire root cross-sections. The oil droplet density gradient varies among genotypes. Genotypes with a linear rather than an exponential increase of oil droplet density from the inner to the outer parenchyma can be chosen for better stability during post-harvest processing. The negative correlation of essential oil content and root thickness as observed in our breeding material can be counteracted through a

Phytochemical constituents, antioxidant activity and toxicity potential of the essential oil from Ferula gummosa Boiss. roots

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T. Saadattalab

2017-11-01

Full Text Available Background and objectives: Ferula gummosa Boiss. (Umbelliferae is a popular medicinal plant, which is known mostly for therapeutic uses of its oleo-gum-resin (Barijeh in Persian. In the present study, the essential oil of F. gummosa roots was investigated for its phytochemical constituents, antioxidant activity and toxicity potential. Methods: Phytochemical constituents of the essential oil (extracted by hydrodistillation method were analyzed using GC-MS. Antioxidant and toxicity properties of the oil were also evaluated in DPPH free radical-scavenging assay and brine shrimp lethality test, respectively. Results: Forty-two compounds, representing 87.7% of total oil, were identified by GC-MS analysis of the plant roots oil. The essential oil was characterized by a high concentration of monoterpene hydrocarbons (55.9%, mainly β-pinene (33.2%, β-phellandrene (8.0% and α-pinene (6.9%. In DPPH free radical-scavenging assay, the oil sample did not demonstrate any activity at the highest tested concentration (1.0 mg/mL. However, it was found very toxic in brine shrimp lethality test with LD50 value of 2.4 µg/mL. Conclusion: The results of this study introduced the F. gummosa roots oil as a source of monoterpene hydrocarbons, especially β-pinene. Considering the high yield of essential oil extraction (12.1% v/w, these compounds may be involved in anticonvulsant, antinociceptive and anti-inflammatory properties of F. gummosa root. Moreover, considerable toxicity of the root oil highlights it as an appropriate candidate for further mechanistic toxicological studies.

Antimicrobial activity of essential oils against Staphylococcus aureus biofilms.

Science.gov (United States)

Vázquez-Sánchez, Daniel; Cabo, Marta L; Rodríguez-Herrera, Juan J

2015-12-01

The present study was aimed to evaluate the potential of essential oils to remove the foodborne pathogen Staphylococcus aureus from food-processing facilities. The effectiveness of 19 essential oils against planktonic cells of S. aureus was firstly assessed by minimal inhibitory concentration. Planktonic cells showed a wide variability in resistance to essential oils, with thyme oil as the most effective, followed by lemongrass oil and then vetiver oil. The eight essential oils most effective against planktonic cells were subsequently tested against 48-h-old biofilms formed on stainless steel. All essential oils reduced significantly (p oils were the most effective, but high concentrations were needed to achieve logarithmic reductions over 4 log CFU/cm(2) after 30 min exposure. Alternatively, the use of sub-lethal doses of thyme oil allowed to slow down biofilm formation and to enhance the efficiency of thyme oil and benzalkonium chloride against biofilms. However, some cellular adaptation to thyme oil was detected. Therefore, essential oil-based treatments should be based on the rotation and combination of different essential oils or with other biocides to prevent the emergence of antimicrobial-resistant strains. © The Author(s) 2014.

Chemical composition and antimicrobial potency of essential oils from roots of Pinus growing in Algeria

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Nadia FEKIH

2016-11-01

Full Text Available The objective of this study is to determine the chemical composition and antimicrobial potency of essential oils of three roots of genus Pinus (P. halepensis, P. pinea and P. pinaster growing in Algeria for the first time. The essential oils used in the present study were isolated by hydrodistillation using a Cleavenger-type apparatus according the European Pharmacopoeia, and identified by GC and GC-MS. 14, 12, 11 constituents were identified, representing an average of 98.8 %, 91.3 % and 83.6 % of the total oil of roots of P. halepensis, P. pinea and P. pinaster respectively. The chemical profile reveals the dominance of monoterpenes compounds, although some quantitative variance was noticed. The main constituents of the oil root of P. halepensis were α-Pinene (87.4 % and trans-p-Caryophyllene (3.5 %. The oil of P. pinea was dominated by Limonene (66.3 %, Trans-p-Caryophyllene (9.6 %, Myrcene (3.2 % and Osmorhizol (3.2 %. The oil of P. pinaster was rich by α-Pinene (22 %, β-Pinene (27.1 % and Trans-p-Caryophyllene (21.4 %. The antimicrobial activities of the essential oils from roots of P. halepensis, P. pinea and P. pinaster were tested against a panel of bacteria and one yeast strain using the agar well diffusion technique and dilution methods. The diameters of zones of inhibition exhibited by the essential oils were between 7 and 25 mm. The minimal inhibitory concentration was 28.4 μg/mL of P. halepensis and P. pinaster against S. aureus and C. albicans respectively.

Chemically catalyzed uptake of 2,4,6-trinitrotoluene by Vetiveria zizanioides

International Nuclear Information System (INIS)

Makris, Konstantinos C.; Shakya, Kabindra M.; Datta, Rupali; Sarkar, Dibyendu; Pachanoor, Devanand

2007-01-01

The efficiency of vetiver grass (Vetiveria zizanioides) in removing 2,4,6-trinitrotoluene (TNT) from aqueous media was explored in the presence of a common agrochemical, urea, used as a chaotropic agent. Chaotropic agents disrupt water structure, increasing solubilization of hydrophobic compounds (TNT), thus, enhancing plant TNT uptake. The primary objectives of this study were to: (i) characterize TNT absorption by vetiver in hydroponic media, and (ii) determine the effect of urea on chemically catalyzing TNT uptake by vetiver grass in hydroponic media. Results showed that vetiver exhibited a high TNT uptake capacity (1.026 mg g -1 ), but kinetics were slow. Uptake was considerably enhanced in the presence of urea, which significantly (p<0.001) increased the 2nd-order reaction rate constant over that of the untreated (no urea) control. Three major TNT metabolites were detected in the roots, but not in the shoot, namely 1,3,5-trinitrobenzene, 4-amino 2,6-dinitrotoluene, and 2-amino 4,6-dinitrotoluene, indicating TNT degradation by vetiver grass. - A common agrochemical, urea catalyzes TNT removal by vetiver grass in aqueous media

Chemically catalyzed uptake of 2,4,6-trinitrotoluene by Vetiveria zizanioides

Energy Technology Data Exchange (ETDEWEB)

Makris, Konstantinos C. [Environmental Geochemistry Laboratory, Department of Earth and Environmental Science, College of Sciences, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX 78249 (United States); Shakya, Kabindra M. [Environmental Geochemistry Laboratory, Department of Earth and Environmental Science, College of Sciences, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX 78249 (United States); Datta, Rupali [Environmental Geochemistry Laboratory, Department of Earth and Environmental Science, College of Sciences, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX 78249 (United States); Sarkar, Dibyendu [Environmental Geochemistry Laboratory, Department of Earth and Environmental Science, College of Sciences, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX 78249 (United States)]. E-mail: dibyendu.sarkar@utsa.edu; Pachanoor, Devanand [Environmental Geochemistry Laboratory, Department of Earth and Environmental Science, College of Sciences, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX 78249 (United States)

2007-07-15

The efficiency of vetiver grass (Vetiveria zizanioides) in removing 2,4,6-trinitrotoluene (TNT) from aqueous media was explored in the presence of a common agrochemical, urea, used as a chaotropic agent. Chaotropic agents disrupt water structure, increasing solubilization of hydrophobic compounds (TNT), thus, enhancing plant TNT uptake. The primary objectives of this study were to: (i) characterize TNT absorption by vetiver in hydroponic media, and (ii) determine the effect of urea on chemically catalyzing TNT uptake by vetiver grass in hydroponic media. Results showed that vetiver exhibited a high TNT uptake capacity (1.026 mg g{sup -1}), but kinetics were slow. Uptake was considerably enhanced in the presence of urea, which significantly (p<0.001) increased the 2nd-order reaction rate constant over that of the untreated (no urea) control. Three major TNT metabolites were detected in the roots, but not in the shoot, namely 1,3,5-trinitrobenzene, 4-amino 2,6-dinitrotoluene, and 2-amino 4,6-dinitrotoluene, indicating TNT degradation by vetiver grass. - A common agrochemical, urea catalyzes TNT removal by vetiver grass in aqueous media.

Levisticum officinale hairy root cultures: influence of light and light type on growth and essential oil production

OpenAIRE

Lima, A. Sofia; Sousa, Maria João; Pedro, Luís G.; Figueiredo, A. Cristina; Barroso, J.G.; Deans, S.G.; Scheffer, J.J.C.

2005-01-01

The essential oils of Levisticum officinale W.D.J. Koch (Apiaceae), including those isolated from the roots, are used in the cosmetic, pharmaceutical and food industries [1]. This perennial and herbaceous plant, commonly known as lovage, is widely known by its aromatic, ornamental and medicinal properties. The effect of light and light type on growth and essential oil production of lovage hairy root cultures was studied by comparison of cultures maintained under “blue-basic” (400-550nm) and “...

Chemical Composition and Insecticidal Activity of Essential Oils from Zanthoxylum dissitum Leaves and Roots against Three Species of Storage Pests.

Science.gov (United States)

Wang, Cheng-Fang; Yang, Kai; You, Chun-Xue; Zhang, Wen-Juan; Guo, Shan-Shan; Geng, Zhu-Feng; Du, Shu-Shan; Wang, Yong-Yan

2015-05-04

This work aimed to investigate chemical composition of essential oils obtained from Zanthoxylum dissitum leaves and roots and their insecticidal activities against several stored product pests, namely the cigarette beetle (Lasioderma serricorne), red flour beetle (Tribolium castaneum) and black carpet beetle (Attagenus piceus). The analysis by GC-MS of the essential oils allowed the identification of 28 and 22 components, respectively. It was found that sesquiterpenoids comprised a fairly high portion of the two essential oils, with percentages of 74.0% and 80.9% in the leaves and roots, respectively. The main constituents identified in the essential oil of Z. dissitum leaves were δ-cadinol (12.8%), caryophyllene (12.7%), β-cubebene (7.9%), 4-terpineol (7.5%) and germacrene D-4-ol (5.7%), while humulene epoxide II (29.4%), caryophyllene oxide (24.0%), diepicedrene-1-oxide (10.7%) and Z,Z,Z-1,5,9,9-tetramethyl-1,4,7-cycloundecatriene (8.7%) were the major components in the essential oil of Z. dissitum roots. The insecticidal activity results indicated that the essential oil of Z. dissitum roots exhibited moderate contact toxicity against three species of storage pests, L. serricorne,T. castaneum and A. piceus, with LD50 values of 13.8, 43.7 and 96.8 µg/adult, respectively.

Nootkatone is a repellent for Formosan subterranean termite (Coptotermes formosanus).

Science.gov (United States)

Zhu, B C; Henderson, G; Chen, F; Maistrello, L; Laine, R A

2001-03-01

We examined the behavior of Formosan subterranean termites toward one of the components of vetiver grass oil, the roots of which manufacture insect repellents. We found nootkatone, a sesquiterpene ketone, isolated from vetiver oil is a strong repellent and toxicant to Formosan subterranean termites. The lowest effective concentration tested was 10 micrograms/g substrate. This is the first report of nootkatone being a repellent to insects.

Composition of the Essential Oil From Roots and Rhizomes of Valeriana phu L. Growing Wild in Turkey

NARCIS (Netherlands)

Aslan, Sinem; Kartal, Murat; Kurucu, Semra; Kuiper, Johanna M.; Kruizinga, Wim H.; Bos, Rein; Woerdenbag, Herman J.; Kayser, Oliver

2009-01-01

The volatile constituents isolated from roots and rhizomes of Valeriana phu L. were investigated by GC and GUMS (EI) analysis. The roots and rhizomes yielded 0.64% (v/w) essential oil on a dry weight basis. From the oil 70 compounds Could he identified with a valerenal isomer (11.3%), valerianol

Photocatalytic Degradation of Organic Dye under UV‐A Irradiation Using TiO2‐Vetiver Multifunctional Nano Particles

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Le Thi Song Thao

2017-01-01

Full Text Available The properties and photocatalytic performance of anatase nanoparticles of pure TiO2 and a core–shell structure of TiO2 on calcined vetiver grass leaves have been compared. Samples were fabricated by sol‐gel and heating at 450 °C for 5h.The comparison was based on data for X‐ray diffraction(XRD, UV‐Vis spectrophotometry, photoluminescence, transmission electron microscopy, specific surface area measurement, pore volume assessment, and methylene blue degradation testing. The results showed that the pure TiO2 consisted of agglomerated equiaxed nanoparticles of individual grain sizes in the range 10–20 nm. In contrast, the TiO2‐vetiver composite exhibited a core–shell structure consisting of a carbonaceous core and TiO2 shell of thickness 10–15nm. These features influenced the photocatalytic performance in such a way that the lower crosssectional area, greater surface area, and higher pore volume of the TiO2 shell increased the number of active sites, reduced the charge carrier diffusion distance, and reduced the recombination rate, thereby improving the photocatalytic activity. This improvement derived from morphological characteristics rather than crystallographic, semiconducting, or optical properties. The improved performance of the TiO2‐vetiver core–shell was unexpected since the X‐ray diffraction data showed that the crystallinity of the TiO2 was lower than that of the pure TiO2. These outcomes are attributed to the reducing effect of the carbon on the TiO2 during heating, thereby facilitating the formation of oxygen vacancies, which enhance charge separation and hence photocatalysis by TiO2.

Chemical composition and antimicrobial potency of essential oils from roots of Pinus growing in Algeria

OpenAIRE

Nadia FEKIH; Hocine ALLALI; Abdeslem Nacer AREZKI AIT; Salima MERGHACHE; Djamila MAGHNIA; Jean COSTA

2016-01-01

The objective of this study is to determine the chemical composition and antimicrobial potency of essential oils of three roots of genus Pinus (P. halepensis, P. pinea and P. pinaster) growing in Algeria for the first time. The essential oils used in the present study were isolated by hydrodistillation using a Cleavenger-type apparatus according the European Pharmacopoeia, and identified by GC and GC-MS. 14, 12, 11 constituents were identified, representing an average of 98.8 %, 9...

Chemical composition, antibacterial and antifungal activities of flowerhead and root essential oils of Santolina chamaecyparissus L., growing wild in Tunisia

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Karima Bel Hadj Salah-Fatnassi

2017-05-01

Full Text Available The antimicrobial properties of essential oil from various Santolina species have not been investigated enough in the previous studies dealing with the biological activities of medicinal plants. In Tunisia, Santolina chamaecyparissus L. (Asteraceae is the only Santolina species recorded and is used as vermifuge and emmenagogue. The chemical composition, antibacterial and antifungal properties of essential oils from the flowerheads and roots of spontaneous S. chamaecyparissus growing in Tunisia and the chemical composition which leads to the Tunisian chemotype are investigated here for the first time. Essential oils isolated by hydro distillation from flowerheads and roots of S. chamaecyparissus were analyzed by GC and GC/MS. Two methods served for antimicrobial assays of the essential oils: diffusion in a solid medium and micro-well dilution assay. Antifungal tests were carried out by the agar incorporation method. Sixty-seven constituents were identified from the essential oil of the flowerhead. The major constituents were: 1,8-cineole and β-eudesmol. Two non identified compounds were present at the highest concentration in root oil. Flowerhead oil was characterized by high contents in monoterpenes and sesquiterpenes oxygenated compounds. The flowerhead essential oil demonstrated potent of antibacterial properties against Pseudomonas aeruginosa ATCC and Enterococcus faecalis ATCC, with MIC of 0.625 μg/ml. These findings demonstrate that the flowerhead essential oils of S. chamaecyparissus have excellent antibacterial properties and for this reason they could contribute to decrease the problem of microbial resistance to antibiotics.

Molecular and structural changes induced by essential oils treatments in Vicia faba roots detected by genotoxicity testing.

Science.gov (United States)

Sturchio, Elena; Boccia, Priscilla; Zanellato, Miriam; Meconi, Claudia; Donnarumma, Lucia; Mercurio, Giuseppe; Mecozzi, Mauro

2016-01-01

Over the last few years, there has been an increased interest in exploiting allelopathy in organic agriculture. The aim of this investigation was to examine the effects of essential oil mixtures in order to establish their allelopathic use in agriculture. Two mixtures of essential oils consisting respectively of tea tree oil (TTO) and clove plus rosemary (C + R) oils were tested. Phytotoxicity and genotoxicity tests on the root meristems of Vicia faba minor were performed. A phytotoxic influence was particularly relevant for C + R mixture, while genotoxicity tests revealed significant results with both C + R oil mixture and TTO. Phenotypic analysis on Vicia faba minor primary roots following C + R oil mixture treatment resulted in callose production, an early symptom attributed to lipid peroxidation. The approach described in this study, based on genotoxicity bioassays, might identify specific DNA damage induced by essential oil treatments. These tests may represent a powerful method to evaluate potential adverse effects of different mixtures of essential oils that might be useful in alternative agriculture. Future studies are focusing on the positive synergism of more complex mixtures of essential oils in order to reduce concentrations of potentially toxic components while at the same time maintaining efficacy in antimicrobial and antifungal management.

CHEMICAL COMPOSITION AND ANTIMICROBIAL ACTIVITY OF SOLIDAGO CANADENSIS LINN. ROOT ESSENTIAL OIL

OpenAIRE

Mishra, Devendra; Joshi, Shivani; Bisht, Ganga; Pilkhwal, Sangeeta

2010-01-01

The essential oil from the roots of Solidago canadensis Linn. (fam. Asteraceae) was analyzed by GC, GC/MS and NMR spectroscopy. Thirty nine constituents comprising 75.4% of the total oil were identified from the oil. Thymol constituted 20.25% of the oil followed by α-copaene (6.26%) and carvacrol (5.51%). The antimicrobial activity of the oil was evaluated using disc diffusion method. Results showed that the oil exhibited significant antibacterial activity against S. feacalis and E. coli wher...

Chemical composition and antimicrobial activity of solidago canadensis linn. Root essential oil.

Science.gov (United States)

Mishra, Devendra; Joshi, Shivani; Bisht, Ganga; Pilkhwal, Sangeeta

2010-06-01

The essential oil from the roots of Solidago canadensis Linn. (fam. Asteraceae) was analyzed by GC, GC/MS and NMR spectroscopy. Thirty nine constituents comprising 75.4% of the total oil were identified from the oil. Thymol constituted 20.25% of the oil followed by α-copaene (6.26%) and carvacrol (5.51%). The antimicrobial activity of the oil was evaluated using disc diffusion method. Results showed that the oil exhibited significant antibacterial activity against S. feacalis and E. coli whereas it showed moderate antifungal activity against C. albicans.

MAIL1 is essential for development of the primary root but not of anchor roots

OpenAIRE

Ühlken, Christine; Hoth, Stefan; Weingartner, Magdalena

2014-01-01

MAIN-LIKE1 (MAIL1) is a ubiquitously expressed nuclear protein, which has a crucial function during root development. We have recently described loss of function mutants for MAIL1, in which the organization and function of the primary root meristem is lost soon after germination. Moreover cell differentiation is impaired resulting in primary root growth arrest soon after emergence. Here we show that mail1 mutants form several anchor roots from the hypocotyl to root junction. These anchor root...

Essential oils and crude extracts from Chrysanthemum trifurcatum leaves, stems and roots: chemical composition and antibacterial activity.

Science.gov (United States)

Sassi, Ahlem Ben; Skhiri, Fethia Harzallah; Chraief, Imed; Bourgougnon, Nathalie; Hammami, Mohamed; Aouni, Mahjoub

2014-01-01

The essential oils from the leaves, stems and roots of Chrysanthemum trifurcatum (Desf.) Batt. and Trab. var. macrocephalum (viv.) were obtained by hydrodistillation and their chemical compositions were analysed by gas chromatography (GC) and gas chromatography-mass spectrometry (GC-MS), in order to get insight into similarities and differences as to their active composition. A total of fifty compounds were identified, constituting 97.84%, 99.02% and 98.20% of total oil composition of the leaves, stems and roots, respectively. Monoterpene hydrocarbons were shown to be the main group of constituents of the leaves and stems parts in the ratio of 67.88% and 51.29%, respectively. But, the major group in the roots oil was found to be sesquiterpene hydrocarbons (70.30%). The main compounds in leaves oil were limonene (26.83%), γ-terpinene (19.68%), α-pinene (9.7%) and α-terpenyl acetate (7.16%). The stems oil, contains mainly limonene (32.91%), 4-terpenyl acetate (16.33%) and γ-terpinene (5.93%), whereas the main compounds in roots oil were α-calacorene (25.98%), α-cedrene (16.55%), β-bourbobene (14.91%), elemol (7.45%) and 2-hexenal (6.88%). The crude organic extracts of leaves, stems and roots, obtained by maceration with solvents of increasing polarity: petroleum ether, ethyl acetate and methanol, contained tannins, flavonoids and alkaloids. Meanwhile, essential oils and organic extracts were tested for antibacterial activities against eight Gram-positive and Gram-negative strains, using a microdilution method. The oil and methanolic extact from C. trifurcatum leaves showed a great potential of antibacterial effect against Bacillus subtilis and Staphylococcus epidermidis, with an IC50 range of 31.25-62.5 µg/ml.

Effects of Fungicides, Essential Oils and Gamma Irradiated Bioagents on Chickpea Root Rot Caused by Sclerotium rolfsii

International Nuclear Information System (INIS)

El-Batal, A.I.; Fathy, R.M.; Ismail, A.A.; Mubark, H.M.; Mahmoud, Y.A.

2011-01-01

Sclerotium rolfsii (S. rolfsii) causes root rot disease in several crops including Cicer arietinum (chickpea) that results in low yield. In vitro experiments on fungicides, vitavax and monceren T, and essential oils, clove and mint oils, were conducted to control root rot disease of chickpea caused by S. rolfsii. The treatments resulted in 80 % suppression of root rot disease. Gliocladium virens (G. virens) and Gliocladium deliquescens (G. deliquescens) were effective as biocontrol agents against S. rolfsii. The results showed that these treatments greatly reduced the root rot disease in chickpea. In this study, the effect of gamma irradiation at doses 0, 0.25, 0.5, 1.0, 1.5, 2.0, 2.5 and 3.0 kGy on the pathogenecity of G. virens and G. deliquescens against S. rolfsii were investigated. The results revealed that gamma irradiation increased the pathogenecity of G. virens and G. deliquescens against S. rolfsii

Antifungal Activity and Composition of Essential Oils of Conyza canadensis Herbs and Roots

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Katalin Veres

2012-01-01

Full Text Available Essential oils from herbs and roots of Conyza canadensis (horseweed, collected in Hungary, were obtained by hydrodistillation. The chemical compositions of the oils were analysed by combination of GC and GC/MS. The major constituent of the oil obtained from the aerial parts of horseweed was limonene (78%, while the main component of root oil was 2Z,8Z-matricaria ester. The antimicrobial activities of the oils were tested on Gram-positive (Enterococcus faecalis, Staphylococcus aureus, and Streptococcus pyogenes, Gram-negative (Escherichia coli, Pseudomonas aeruginosa bacteria, reference fungal strains, and fungal strains isolated from patients (Candida, Cryptococcus, Trichophyton, Rhodotorula, and Aspergillus by agar disc diffusion and broth dilution methods. None of the oils showed any activity against the tested bacterial strains, but exhibited moderate-to-strong activity against all fungi with the only exception of A. fumigatus. The highest zone of inhibition was observed in case of Cryptococcus neoformans and Trichophyton interdigitalis

Antifungal and phytotoxic activity of essential oil from root of Senecio amplexicaulis Kunth. (Asteraceae) growing wild in high altitude-Himalayan region.

Science.gov (United States)

Singh, Rajendra; Ahluwalia, Vivek; Singh, Pratap; Kumar, Naresh; Prakash Sati, Om; Sati, Nitin

2016-08-01

This work was aimed to evaluate the essential oil from root of medicinally important plant Senecio amplexicaulis for chemical composition, antifungal and phytotoxic activity. The chemical composition analysed by GC/GC-MS showed the presence of monoterpene hydrocarbons in high percentage with marker compounds as α-phellandrene (48.57%), o-cymene (16.80%) and β-ocimene (7.61%). The essential oil exhibited significant antifungal activity against five phytopathogenic fungi, Sclerotium rolfsii, Macrophomina phaseolina, Rhizoctonia solani, Pythium debaryanum and Fusarium oxysporum. The oil demonstrated remarkable phytotoxic activity in tested concentration and significant reduction in seed germination percentage of Phalaris minor and Triticum aestivum at higher concentrations. The roots essential oil showed high yield for one of its marker compound (α-phellandrene) which makes it important natural source of this compound.

Sulphur-containing compounds in the essential oil of Ferula alliacea roots and their mass spectral fragmentation patterns.

Science.gov (United States)

Kasaian, Jamal; Asili, Javad; Iranshahi, Mehrdad

2016-10-01

Context GC-MS analysis is the best way to characterize volatile sulphur-containing compounds. Ferula (Apiaceae) is a genus of perennial herbs. Due to the occurrence of essential oils or oleoresins in the Ferula species, these plants usually possess strong aromatic scent. Terpenoid compounds were the most abundant constituents of Ferula oils, however, in some of Ferula species, the essential oils were dominated by volatile sulphur-containing compounds. Objectives Ferula alliacea Boiss. is considered one of the sources of the oleo-gum-resin asafoetida. In this study, we analyzed the hydrodistilled essential oil from its dried roots and provide new data about retention indices and mass fragmentation patterns of some volatile sulphur-containing compounds that are useful for future studies on this class of compounds. Materials and methods The roots of F. alliacea were collected during the flowering stage of plant, from Bezgh, Kashmar to Neishabour road, Khorasan-Razavi province, Iran, in June 2012. The oil was obtained by hydrodistillation using a Clevenger apparatus and analyzed by GC-MS. Results This is the first report on phytochemical analysis of F. alliacea roots. Seventy-six components, representing 99.5% of the oil, were characterized. The major components were 10-epi-γ-eudesmol (22.3%), valerianol (12.5%), hinesol (8.3%), guaiol (7.3%) and Z-propenyl-sec-butyl trisulphide (6.5%). Predominant mass fragment ions of the identified sulphur-containing compounds are explained in this paper. Conclusion The volatile oil of F. alliacea mostly contains oxygenated sesquiterpenes, however, its odour was dominated by sulphur-containing compounds. The most abundant sulphur-containing compound includes Z-propenyl-sec-butyl trisulphide (6.5%).

Adjunctive use of essential oils following scaling and root planing -a randomized clinical trial.

Science.gov (United States)

Azad, Mohammad Fallah; Schwiertz, Andreas; Jentsch, Holger F R

2016-06-07

Hitherto no study has been published on the effect of the adjunctive administration of essential oils following scaling and root planing (SRP). This study describes the effect of a mouthrinse consisting of essential oils (Cymbopogon flexuosus, Thymus zygis and Rosmarinus officinalis) following SRP by clinical and microbiological variables in patients with generalized moderate chronic periodontitis. Forty-six patients (aged 40-65 years) with moderate chronic periodontitis were randomized in a double-blind study and rinsed their oral cavity following SRP with an essential oil mouthrinse (n  =  23) or placebo (n  =  23) for 14 days. Probing depth (PD), attachment level (AL), bleeding on probing (BOP) and modified sulcus bleeding index (SBI) were recorded at baseline and after 3 and 6 months. Subgingival plaque was taken for assessment of major bacteria associated with periodontitis. AL, PD, BOP and SBI were significantly improved in both groups after three (p   essential oils following SRP has a positive effect on clinical variables and on bacterial levels in the subgingival biofilm. 332-12-24092012, DRKS 00009387, German Clinical Trials Register, Freiburg i. Br., 16.09.2015.

Study of the spatial distribution of mercury in roots of vetiver grass (Chrysopogon zizanioides) by micro-pixe spectrometry.

Science.gov (United States)

Lomonte, Cristina; Wang, Yaodong; Doronila, Augustine; Gregory, David; Baker, Alan J M; Siegele, Rainer; Kolev, Spas D

2014-01-01

Localization of Hg in root tissues of vetivergrass (Chrysopogon zizanioides) was investigated by micro-Proton Induced X-ray Emission (PIXE) spectrometry to gain a better understanding of Hg uptake and its translocation to the aerial plant parts. Tillers of C. zizanioides were grown in a hydroponic culture for 3 weeks under controlled conditions and then exposed to Hg for 10 days with or without the addition of the chelators (NH(4))(2)S(2)O(3) or KI. These treatments were used to study the effects of these chelators on localization of Hg in the root tissues to allow better understanding of Hg uptake during its assisted-phytoextraction. Qualitative elemental micro-PIXE analysis revealed that Hg was mainly localized in the root epidermis and exodermis, tissues containing suberin in all Hg treatments. Hg at trace levels was localized in the vascular bundle when plants were treated with a mercury solution only. However, higher Hg concentrations were found when the solution also contained (NH(4))(2)S(2)O(3) or KI. This finding is consistent with the observed increase in Hg translocation to the aerial parts of the plants in the case of chemically induced Hg phytoextraction.

Application Effect’s Research of Vetiver Eco Blanket in Pubugou Reservoir Fluctuating Zone

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Lan Huijuan

2015-01-01

Full Text Available To solve the ecological disasters in Pubugou Reservoir Fluctuating Zone, ecological blanket governance model is proposed in this paper, which may provide good early environment for plants’ survival in fluctuation zone, and then play the function of greening and sustainable development to ensure the slopes’ stability. Meanwhile, based on the result of vetiver ecological blanket in Hanyuan experimental zone, we find that three kinds of typical Fluctuating Zone slope’s greening effect is good, which includes the dirt piling up slope, the whole lump of rock slope and the gravel piling up slope, and it gets an average coverage of 90.3 % as well as good strength. Due to the different geological conditions, the ecological blankets’ governance effect differs from slope to slope. Using analytic hierarchy process to calculate the weight, we get the dirt piling up slope, the whole lump of rock slope and the gravel piling up slope’s weights are 0.41, 0.17, 0.42, respectively, namely, the dirt piling up slope and the gravel piling up slope have good results overall, followed by the whole lump of rock slope.

Root canal irrigants

OpenAIRE

Kandaswamy, Deivanayagam; Venkateshbabu, Nagendrababu

2010-01-01

Successful root canal therapy relies on the combination of proper instrumentation, irrigation, and obturation of the root canal. Of these three essential steps of root canal therapy, irrigation of the root canal is the most important determinant in the healing of the periapical tissues. The primary endodontic treatment goal must thus be to optimize root canal disinfection and to prevent reinfection. In this review of the literature, various irrigants and the interactions between irrigants are...

Root patterning

NARCIS (Netherlands)

Scheres, Ben; Laskowski, Marta

2016-01-01

The mechanisms that pattern lateral root primordial are essential for the elaboration of root system architecture, a trait of key importance for future crop breeding. But which are most important: periodic or local cues? In this issue of Journal of Experimental Botany (pages 1411-1420), Kircher

In-vitro propagation and antimycotic potential of extracts and essential oil of roots of Aristolochia bracteolata Linn. (Aristolochiaceae).

Science.gov (United States)

Gbadamosi, I T; Egunyomi, A

2012-01-01

In spite of the therapeutic importance of Aristolochia bracteolata Linn. in Nigerian ethnomedicine, it is largely collected from the wild. Owing to the acclaimed potency of the plant and the difficulty in treating candidiasis, the anticandidal activity and in vitro propagation of the plant were investigated. Phytochemical screening and preparation of extracts of the roots were done using standard procedures. Clinical isolates of Candida albicans were screened against extracts and essential oil of Aristolochia bracteolata root using agar-well diffusion method. Minimum Inhibitory Concentration (MIC) of the ethanol extract was determined using broth dilution method. The nodal cuttings of A. bracteolata were cultured on Murashige and Skoog (MS) basal media. A. bracteolata contained alkaloids, saponins and cardenolides. The water extract was inactive on all isolates. The ethanol extract (500 mg/ml) and essential oil (undiluted) exhibited anticandidal activity on 9 out of 10 isolates at 10(1) - 10(6) cfu/ml inoculums concentration. Green growth and callus formation were observed in explants cultured on MS basal media after 30 days. A. bracteolata could be a source of anticandidal phytomedicine and the in vitro propagation confirmed its sustainability as anticandidal agent.

Essential oil from Rhaponticum acaule L. roots: Comparative study using HS-SPME/GC/GC–MS and hydrodistillation techniques

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Batoul Benyelles

2014-12-01

Full Text Available The composition of essential oil extracted from Rhaponticum acaule L. roots growing wild in Algeria was studied by hydrodistillation (HD and by Head-Space Solid Phase Micro-Extraction (HS-SPME. Quantitative but not qualitative differences have been found in the chemical composition of both analysed samples depending on the extraction method. However, the oil obtained from R. acaule roots shows that aliphatic alcohols were found to be the major class (69.2%, followed by the terpenes (5.5%, alkenes (5.2% and alkynes (4.0%. In both cases the analysis were carried out using Gas Chromatography (GC and Gas Chromatography–Mass Spectrometry (GC–MS. Our study shows that HS-SPME extraction could be considered as an alternative technique for the isolation of volatiles from plant. 25 components were identified in oil vs. 39 in the HS-SPME. However the oil composition of roots was mainly represented by a variety of aliphatic hydrocarbons (alcohols, aldehydes and ketones and terpenes which are known for their antimicrobial activities.

On the role of MT1-MMP, a matrix metalloproteinase essential to collagen remodeling, in murine molar eruption and root growth

NARCIS (Netherlands)

Beertsen, Wouter; Holmbeck, Kenn; Niehof, Anneke; Bianco, Paolo; Chrysovergis, Kaliiopi; Birkedal-Hansen, Henning; Everts, Vincent

2002-01-01

Although the connective tissues of the periodontium are subject to a high turnover rate, no conclusive evidence has yet emerged that periodontal collagen turnover is essential for the eruption of teeth or for root elongation. These processes were studied in mice deficient in MT1-MMP, a membrane type

Study of a railway embankment reinforced with jute tassels

Indian Academy of Sciences (India)

Embankment; models (physical); soil reinforcement; jute tassel; slope ... Because of high tensile strength of vetiver grass roots, they act like soil .... All the joints are glued as well as reinforced with steel angles and .... slipping, it is nailed to the top of the embankment by several 25.4 mm iron ... The cables can yield in ten-.

Essential oils chemical composition, antioxidant activities and total phenols of Astrodaucus persicus

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Saeid Goodarzi

2016-02-01

Full Text Available Objective(s:Astrodaucus persicus, Apiaceae, is used as vegetable or food additive in some parts of Iran. The essential oils of different parts of Astrodaucus persicus from Kordestan province were analyzed for the first time and compared with other regions. In this study, antioxidant activities and total phenols determination of aerial parts essential oils and root fractions of A. persicus were investigated. Materials and Methods: The essential oils were obtained by hydro-distillation from flowers/fruits, leaves/stems, ripe fruits and roots of plant and analyzed by GC-MS. Crude root extract was fractionated with hexane, chloroform, ethyl acetate and methanol. Antioxidant activities by DPPH and FRAP methods and total phenols by Folin-ciocalteu assay were measured. Results: The abundant compounds of flowers/fruits blue essential oil were α-thujene, β-pinene and α-pinene. The predominant components of blue leaves/stems essential oil were α-thujene, α-pinene and α-fenchene. The major volatiles of ripe fruits blue essential oil were β-pinene, α-thujene and α-pinene. The chief compounds of root yellow essential oil were trans-caryophyllene, bicycogermacrene and germacrene-D. Total root extract and ethyl acetate fraction showed potent antioxidant activities and high amount of total phenols in comparison to other samples. Among volatile oils, the flowers/fruits essential oil showed potent reducing capacity. Conclusion: The major compounds of aerial parts essential oils were hydrocarbon monoterpenes while the chief percentage of roots essential oil constituents were hydrocarbon sesquiterpenes. α-Eudesmol and β-eudesmol were identified as responsible for creation of blue color in aerial parts essential oils. A. persicus was known as a potent antioxidant among Apiaceae.

Essential oils chemical composition, antioxidant activities and total phenols of Astrodaucus persicus.

Science.gov (United States)

Goodarzi, Saeid; Hadjiakhoondi, Abbas; Yassa, Narguess; Khanavi, Mahnaz; Tofighi, Zahra

2016-02-01

Astrodaucus persicus, Apiaceae, is used as vegetable or food additive in some parts of Iran. The essential oils of different parts of Astrodaucus persicus from Kordestan province were analyzed for the first time and compared with other regions. In this study, antioxidant activities and total phenols determination of aerial parts essential oils and root fractions of A. persicus were investigated. The essential oils were obtained by hydro-distillation from flowers/fruits, leaves/stems, ripe fruits and roots of plant and analyzed by GC-MS. Crude root extract was fractionated with hexane, chloroform, ethyl acetate and methanol. Antioxidant activities by DPPH and FRAP methods and total phenols by Folin-ciocalteu assay were measured. The abundant compounds of flowers/fruits blue essential oil were α-thujene, β-pinene and α-pinene. The predominant components of blue leaves/stems essential oil were α-thujene, α-pinene and α-fenchene. The major volatiles of ripe fruits blue essential oil were β-pinene, α-thujene and α-pinene. The chief compounds of root yellow essential oil were trans-caryophyllene, bicycogermacrene and germacrene-D. Total root extract and ethyl acetate fraction showed potent antioxidant activities and high amount of total phenols in comparison to other samples. Among volatile oils, the flowers/fruits essential oil showed potent reducing capacity. The major compounds of aerial parts essential oils were hydrocarbon monoterpenes while the chief percentage of roots essential oil constituents were hydrocarbon sesquiterpenes. α-Eudesmol and β-eudesmol were identified as responsible for creation of blue color in aerial parts essential oils. A. persicus was known as a potent antioxidant among Apiaceae.

Student Motivation from and Resistance to Active Learning Rooted in Essential Science Practices

Science.gov (United States)

Owens, David C.; Sadler, Troy D.; Barlow, Angela T.; Smith-Walters, Cindi

2017-12-01

Several studies have found active learning to enhance students' motivation and attitudes. Yet, faculty indicate that students resist active learning and censure them on evaluations after incorporating active learning into their instruction, resulting in an apparent paradox. We argue that the disparity in findings across previous studies is the result of variation in the active learning instruction that was implemented. The purpose of this study was to illuminate sources of motivation from and resistance to active learning that resulted from a novel, exemplary active-learning approach rooted in essential science practices and supported by science education literature. This approach was enacted over the course of 4 weeks in eight sections of an introductory undergraduate biology laboratory course. A plant concept inventory, administered to students as a pre-, post-, and delayed-posttest indicated significant proximal and distal learning gains. Qualitative analysis of open-response questionnaires and interviews elucidated sources of motivation and resistance that resulted from this active-learning approach. Several participants indicated this approach enhanced interest, creativity, and motivation to prepare, and resulted in a challenging learning environment that facilitated the sharing of diverse perspectives and the development of a community of learners. Sources of resistance to active learning included participants' unfamiliarity with essential science practices, having to struggle with uncertainty in the absence of authoritative information, and the extra effort required to actively construct knowledge as compared to learning via traditional, teacher-centered instruction. Implications for implementation, including tips for reducing student resistance to active learning, are discussed.

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.

Science.gov (United States)

Uga, Yusaku; Sugimoto, Kazuhiko; Ogawa, Satoshi; Rane, Jagadish; Ishitani, Manabu; Hara, Naho; Kitomi, Yuka; Inukai, Yoshiaki; Ono, Kazuko; Kanno, Noriko; Inoue, Haruhiko; Takehisa, Hinako; Motoyama, Ritsuko; Nagamura, Yoshiaki; Wu, Jianzhong; Matsumoto, Takashi; Takai, Toshiyuki; Okuno, Kazutoshi; Yano, Masahiro

2013-09-01

The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.

Antimicrobial activity of essential oils of Physalis angulata L | Osho ...

African Journals Online (AJOL)

The sensitivity of Bacillus Subtilis, Klebsiella pneumoniae, Pseudomonas aeruginosa and Staphylococcus aureus to the essential oils of both the aerial and root parts were determined. Pseudomonas aeruginosa was resistant to the essential oil from both the aerial and root part of the plant. C. torulopsis, C. stellatoidea and ...

Genetic ablation of root cap cells in Arabidopsis

OpenAIRE

Tsugeki, Ryuji; Fedoroff, Nina V.

1999-01-01

The root cap is increasingly appreciated as a complex and dynamic plant organ. Root caps sense and transmit environmental signals, synthesize and secrete small molecules and macromolecules, and in some species shed metabolically active cells. However, it is not known whether root caps are essential for normal shoot and root development. We report the identification of a root cap-specific promoter and describe its use to genetically ablate root caps by directing root cap-specific expression of...

Moving toward a precise nutrition: preferential loading of seeds with essential nutrients over non-essential toxic elements.

Directory of Open Access Journals (Sweden)

Mather A. Khan

2014-02-01

Full Text Available Plants and seeds are the main source of essential nutrients for humans and livestock. Many advances have recently been made in understanding the molecular mechanisms by which plants take up and accumulate micronutrients such as iron, zinc, copper and manganese. Some of these mechanisms however, also facilitate the accumulation of non-essential toxic elements such as cadmium (Cd and arsenic (As. In humans, Cd and As intake has been associated with multiple disorders including kidney failure, diabetes, cancer and mental health issues. Recent studies have shown that some transporters can discriminate between essential metals and non-essential elements. Furthermore, sequestration of non-essential elements in roots has been described in several plant species as a key process limiting the translocation of non-essential elements to aboveground edible tissues, including seeds. Increasing the concentration of bioavailable micronutrients (biofortification in grains while lowering the accumulation of non-essential elements will likely require the concerted action of several transporters. This review discusses the most recent advances on mineral nutrition that could be used to preferentially enrich seeds with micronutrients and also illustrates how precision breeding and transport engineering could be used to enhance the nutritional value of crops by re-routing essential and non-essential elements to separate sink tissues (roots and seeds.

A New Anatomically Based Nomenclature for the Roots and Root Canals—Part 1: Maxillary Molars

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Jojo Kottoor

2012-01-01

Full Text Available Numerous terminologies have been employed in the dental literature to describe the roots and root canal systems of maxillary molars. This multiplicity in naming of roots and canals makes the reader susceptible to misinterpretation and confusion. No consensus thus far has been arrived at for defining the names of roots and root canals in maxillary molars, including their various morphological aberrations. The anatomical relation of roots and their root canals were identified and were subsequently named based on definite sets of criteria. A new method for identification and naming of roots and root canal anatomy in maxillary molars, based on their root and canal relationship, was formulated and is presented in this paper. The nomenclature makes certain essential modifications to the traditional approach to accommodate naming of the various aberrations presented in the maxillary molars. A simple, yet extensive, nomenclature system has been proposed that appropriately names the internal and external morphology of maxillary molars.

A new anatomically based nomenclature for the roots and root canals-part 1: maxillary molars.

Science.gov (United States)

Kottoor, Jojo; Albuquerque, Denzil Valerian; Velmurugan, Natanasabapathy

2012-01-01

Numerous terminologies have been employed in the dental literature to describe the roots and root canal systems of maxillary molars. This multiplicity in naming of roots and canals makes the reader susceptible to misinterpretation and confusion. No consensus thus far has been arrived at for defining the names of roots and root canals in maxillary molars, including their various morphological aberrations. The anatomical relation of roots and their root canals were identified and were subsequently named based on definite sets of criteria. A new method for identification and naming of roots and root canal anatomy in maxillary molars, based on their root and canal relationship, was formulated and is presented in this paper. The nomenclature makes certain essential modifications to the traditional approach to accommodate naming of the various aberrations presented in the maxillary molars. A simple, yet extensive, nomenclature system has been proposed that appropriately names the internal and external morphology of maxillary molars.

Fine root architecture of nine North American trees

Science.gov (United States)

Kurt S. Pregitzer; Jared L. DeForest; Andrew J. Burton; Michael F. Allen; Roger W. Ruess; Ronald L. Hendrick

2002-01-01

The fine roots of trees are concentrated on lateral branches that arise from perennial roots. They are important in the acquisition of water and essential nutrients, and at the ecosystem level, they make a significant contribution to biogeochemical cycling. Fine roots have often been studied according to arbitrary size classes, e.g., all roots less than 1 or 2 mm in...

Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation

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Tao Wang

2017-06-01

Full Text Available Abscisic acid (ABA plays an essential role in root hair elongation in plants, but the regulatory mechanism remains to be elucidated. In this study, we found that exogenous ABA can promote rice root hair elongation. Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10 had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2 had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module. Treatment of the DR5-GUS and OsPIN-GUS lines with ABA and an auxin efflux inhibitor showed that ABA-induced root hair elongation depends on polar auxin transport. To examine the transcriptional response to ABA, we divided rice root tips into three regions: short root hair, long root hair and root tip zones; and conducted RNA-seq analysis with or without ABA treatment. Examination of genes involved in auxin transport, biosynthesis and metabolism indicated that ABA promotes auxin biosynthesis and polar auxin transport in the root tip, which may lead to auxin accumulation in the long root hair zone. Our findings shed light on how ABA regulates root hair elongation through crosstalk with auxin biosynthesis and transport to orchestrate plant development.

GC-MS analysis and cardiovascular activity of the essential oil of Ocotea duckei

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José M. Barbosa-Filho

Full Text Available The essential oils obtained by steam distillation from the roots, stems, leaves and fruits of Ocotea duckei had their composition analyzed by GC-MS. The pharmacological activity of these oils was also evaluated showing significant cardiovascular effects. Forty-nine substances were identified, consisting of a complex mixture of monoterpenes (45% and sesquiterpenes (55%. The fruits yielded (1.9% more essential oil than the stems (1.0%, roots (0.8% and leaves (0.7%. The main component in the oil of the leaves was trans-caryophyllene (60.54%, in the stem bark beta-eudesmol (27.51% and in the fruits, dl-limonene (30.12%. The predominant essential oil component in the roots was elemol (24.31%. In non-anaesthetized normotensive rats, the essential oils from different parts of Ocotea duckei (leaves, fruits, stem and roots induced significant (p < 0.05 hypotension followed by bradycardia.

A review on the molecular mechanism of plants rooting modulated ...

African Journals Online (AJOL)

Phytohormones, especially auxin, played an essential role in regulating roots developments. This review focused on recent advances in the research of plants rooting genomics and proteomics, including auxin biosynthesis, metabolism, transport, and signaling pathway which are involved in modulating plants rooting and ...

Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations.

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Parra-Londono, Sebastian; Kavka, Mareike; Samans, Birgit; Snowdon, Rod; Wieckhorst, Silke; Uptmoor, Ralf

2018-02-12

Roots facilitate acquisition of macro- and micronutrients, which are crucial for plant productivity and anchorage in the soil. Phosphorus (P) is rapidly immobilized in the soil and hardly available for plants. Adaptation to P scarcity relies on changes in root morphology towards rooting systems well suited for topsoil foraging. Root-system architecture (RSA) defines the spatial organization of the network comprising primary, lateral and stem-derived roots and is important for adaptation to stress conditions. RSA phenotyping is a challenging task and essential for understanding root development. In this study, 19 traits describing RSA were analysed in a diversity panel comprising 194 sorghum genotypes, fingerprinted with a 90-k single-nucleotide polymorphism (SNP) array and grown under low and high P availability. Multivariate analysis was conducted and revealed three different RSA types: (1) a small root system; (2) a compact and bushy rooting type; and (3) an exploratory root system, which might benefit plant growth and development if water, nitrogen (N) or P availability is limited. While several genotypes displayed similar rooting types in different environments, others responded to P scarcity positively by developing more exploratory root systems, or negatively with root growth suppression. Genome-wide association studies revealed significant quantitative trait loci (P root-system development on chromosomes SBI-02 and SBI-03. Sorghum genotypes with a compact, bushy and shallow root system provide potential adaptation to P scarcity in the field by allowing thorough topsoil foraging, while genotypes with an exploratory root system may be advantageous if N or water is the limiting factor, although such genotypes showed highest P uptake levels under the artificial conditions of the present study. © The Author(s) 2018. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Systems approaches to study root architecture dynamics

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Candela eCuesta

2013-12-01

Full Text Available The plant root system is essential for providing anchorage to the soil, supplying minerals and water, and synthesizing metabolites. It is a dynamic organ modulated by external cues such as environmental signals, water and nutrients availability, salinity and others. Lateral roots are initiated from the primary root post-embryonically, after which they progress through discrete developmental stages which can be independently controlled, providing a high level of plasticity during root system formation.Within this review, main contributions are presented, from the classical forward genetic screens to the more recent high-throughput approaches, combined with computer model predictions, dissecting how lateral roots and thereby root system architecture is established and developed.

Improving crop nutrient efficiency through root architecture modifications.

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Li, Xinxin; Zeng, Rensen; Liao, Hong

2016-03-01

Improving crop nutrient efficiency becomes an essential consideration for environmentally friendly and sustainable agriculture. Plant growth and development is dependent on 17 essential nutrient elements, among them, nitrogen (N) and phosphorus (P) are the two most important mineral nutrients. Hence it is not surprising that low N and/or low P availability in soils severely constrains crop growth and productivity, and thereby have become high priority targets for improving nutrient efficiency in crops. Root exploration largely determines the ability of plants to acquire mineral nutrients from soils. Therefore, root architecture, the 3-dimensional configuration of the plant's root system in the soil, is of great importance for improving crop nutrient efficiency. Furthermore, the symbiotic associations between host plants and arbuscular mycorrhiza fungi/rhizobial bacteria, are additional important strategies to enhance nutrient acquisition. In this review, we summarize the recent advances in the current understanding of crop species control of root architecture alterations in response to nutrient availability and root/microbe symbioses, through gene or QTL regulation, which results in enhanced nutrient acquisition. © 2015 Institute of Botany, Chinese Academy of Sciences.

Unusual anatomy of maxillary central incisor with two roots

OpenAIRE

T S Ashwini Shivakumar; Saleem Makandar; Ajay Kadam

2012-01-01

Introduction: Knowledge of root canal morphology is essential for successful endodontic therapy. Failure to recognize unusual root canal anatomy may lead to unsuccessful endodontic treatment. Case Report: This case report describes the successful endodontic treatment of the maxillary central incisor with unusual anatomy of two roots and two root canals. A 23-year-old male patient was referred for dental consultation with discoloration of the maxillary right central incisor with periapical les...

Using Vetiver grass technology for mitigating sediment loads in the Talakhaya Watershed areas in Rota, CNMI

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Mohammad H. Golabi

2018-06-01

Full Text Available Talakhaya watershed in Rota is identified as a Coral Reef Management Priority site for CNMI (Commonwealth of Northern Mariana Islands. In 2010 federal and jurisdictional partners developed a Conservation Action Plan (CAP for the Talakhaya Watershed. The goal of this initial Watershed Soil Loss Assessment therefore, was to assist in evaluating the re-vegetation objectives of ‘Mitigating Sediment Load’ in the Talakhaya watershed by making a thorough characterization of its main river systems. The objectives of this project were to reach those goals by measuring the hydrological parameters following the installation and the use of water meters, barometric level loggers, turbidity meters and rain gauges. The water flow as well as the turbidity level of each stream leading to the ocean from the Talakhaya Watershed was measured and sedimentation level was assessed accordingly. The results from the monitoring of the watershed conducted during the project timeline reported here show that all four rivers under study have statistically different stage-discharge curves. The river's relationship between time and turbidity also vary especially in the summer months of the first-year observations. Linear and convex polynomial relationships were sometimes observed in the different rainfall groupings for the four river systems, however relationships were often not significant. This-being-said, Quantile Regressions suggest that when data from all four river systems are combined for cases where there is some detectable rainfall, a maximum possible turbidity level can be defined. Keywords: Watershed Management, Vetiver grass system, Coral, Badlands, Micronesia, Rota, CNMI

GiA Roots: software for the high throughput analysis of plant root system architecture

Science.gov (United States)

2012-01-01

Background Characterizing root system architecture (RSA) is essential to understanding the development and function of vascular plants. Identifying RSA-associated genes also represents an underexplored opportunity for crop improvement. Software tools are needed to accelerate the pace at which quantitative traits of RSA are estimated from images of root networks. Results We have developed GiA Roots (General Image Analysis of Roots), a semi-automated software tool designed specifically for the high-throughput analysis of root system images. GiA Roots includes user-assisted algorithms to distinguish root from background and a fully automated pipeline that extracts dozens of root system phenotypes. Quantitative information on each phenotype, along with intermediate steps for full reproducibility, is returned to the end-user for downstream analysis. GiA Roots has a GUI front end and a command-line interface for interweaving the software into large-scale workflows. GiA Roots can also be extended to estimate novel phenotypes specified by the end-user. Conclusions We demonstrate the use of GiA Roots on a set of 2393 images of rice roots representing 12 genotypes from the species Oryza sativa. We validate trait measurements against prior analyses of this image set that demonstrated that RSA traits are likely heritable and associated with genotypic differences. Moreover, we demonstrate that GiA Roots is extensible and an end-user can add functionality so that GiA Roots can estimate novel RSA traits. In summary, we show that the software can function as an efficient tool as part of a workflow to move from large numbers of root images to downstream analysis. PMID:22834569

Lateral root organogenesis - from cell to organ.

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Benková, Eva; Bielach, Agnieszka

2010-12-01

Unlike locomotive organisms capable of actively approaching essential resources, sessile plants must efficiently exploit their habitat for water and nutrients. This involves root-mediated underground interactions allowing plants to adapt to soils of diverse qualities. The root system of plants is a dynamic structure that modulates primary root growth and root branching by continuous integration of environmental inputs, such as nutrition availability, soil aeration, humidity, or salinity. Root branching is an extremely flexible means to rapidly adjust the overall surface of the root system and plants have evolved efficient control mechanisms, including, firstly initiation, when and where to start lateral root formation; secondly lateral root primordia organogenesis, during which the development of primordia can be arrested for a certain time; and thirdly lateral root emergence. Our review will focus on the most recent advances in understanding the molecular mechanisms involved in the regulation of lateral root initiation and organogenesis with the main focus on root system of the model plant Arabidopsis thaliana. Copyright © 2010 Elsevier Ltd. All rights reserved.

Chemical Composition of Volatiles; Antimicrobial, Antioxidant and Cholinesterase Inhibitory Activity of Chaerophyllum aromaticum L. (Apiaceae) Essential Oils and Extracts.

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Petrović, Goran M; Stamenković, Jelena G; Kostevski, Ivana R; Stojanović, Gordana S; Mitić, Violeta D; Zlatković, Bojan K

2017-05-01

The present study reports the chemical composition of the headspace volatiles (HS) and essential oils obtained from fresh Chaerophyllum aromaticum root and aerial parts in full vegetative phase, as well as biological activities of their essential oils and MeOH extracts. In HS samples, the most dominant components were monoterpene hydrocarbons. On the other hand, the essential oils consisted mainly of sesquiterpenoids, representing 73.4% of the root and 63.4% of the aerial parts essential oil. The results of antibacterial assay showed that the aerial parts essential oil and MeOH extract have no antibacterial activity, while the root essential oil and extract showed some activity. Both of the tested essential oils exhibited anticholinesterase activity (47.65% and 50.88%, respectively); MeOH extract of the root showed only 8.40% inhibition, while aerial part extract acted as an activator of cholinesterase. Regarding the antioxidant activity, extracts were found to be more effective than the essential oils. © 2017 Wiley-VHCA AG, Zurich, Switzerland.

An overview of management of root fractures.

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Prithviraj, D R; Bhalla, H K; Vashisht, R; Regish, K M; Suresh, P

2014-01-01

Crown or root fractures are the most commonly encountered emergencies in the dental clinic. Root fractures occur in fewer than eight percent of the traumatic injuries to permanent teeth. They are broadly classified as horizontal and vertical root fractures. Correct diagnosis of root fractures is essential to ensure a proper treatment plan and hence, the best possible prognosis. Indication of the type of treatment to be used depends primarily on the level of the fracture line. Therefore, a clinician must also have a thorough knowledge of the various treatment approaches to devise a treatment plan accordingly. Various treatment strategies have been proposed, each with their own advantages and disadvantages. Hence, this literature review presents an overview of the various types of root fractures and their management.

Comparative analysis of the essential oils from normal and hairy ...

African Journals Online (AJOL)

The essential oils were extracted with steam distillation from normal and hairy roots of Panax japonicus C.A. Meyer. The constituents of essential oils were analyzed by gas chromatography mass spectrometry (GC-MS). The results showed that 40 and 46 kinds of compounds were identified from the essential oils of normal ...

Root structure-function relationships in 74 species: evidence of a root economics spectrum related to carbon economy.

Science.gov (United States)

Roumet, Catherine; Birouste, Marine; Picon-Cochard, Catherine; Ghestem, Murielle; Osman, Normaniza; Vrignon-Brenas, Sylvain; Cao, Kun-Fang; Stokes, Alexia

2016-05-01

Although fine roots are important components of the global carbon cycle, there is limited understanding of root structure-function relationships among species. We determined whether root respiration rate and decomposability, two key processes driving carbon cycling but always studied separately, varied with root morphological and chemical traits, in a coordinated way that would demonstrate the existence of a root economics spectrum (RES). Twelve traits were measured on fine roots (diameter ≤ 2 mm) of 74 species (31 graminoids and 43 herbaceous and dwarf shrub eudicots) collected in three biomes. The findings of this study support the existence of a RES representing an axis of trait variation in which root respiration was positively correlated to nitrogen concentration and specific root length and negatively correlated to the root dry matter content, lignin : nitrogen ratio and the remaining mass after decomposition. This pattern of traits was highly consistent within graminoids but less consistent within eudicots, as a result of an uncoupling between decomposability and morphology, and of heterogeneity of individual roots of eudicots within the fine-root pool. The positive relationship found between root respiration and decomposability is essential for a better understanding of vegetation-soil feedbacks and for improving terrestrial biosphere models predicting the consequences of plant community changes for carbon cycling. © 2016 CNRS. New Phytologist © 2016 New Phytologist Trust.

Single-rooted maxillary first molar with a single canal: endodontic retreatment.

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de la Torre, Francisco; Cisneros-Cabello, Rafael; Aranguren, José Luis; Estévez, Roberto; Velasco-Ortega, Eugenio; Segura-Egea, Juan José

2008-12-01

This case report presents an unusual root canal system in a maxillary first molar tooth: a single canal in a single root. The endodontic access cavity displayed only 1 canal orifice. This case demonstrated that: 1) clinicians must have adequate knowledge about root canal morphology and its variations; 2) the location and morphology of root canals should be identified radiologically before the root canal treatment; and 3) careful examination of radiographs and the internal anatomy of teeth is essential.

Drought stress responses in soybean roots and nodules

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Karl Kunert

2016-07-01

Full Text Available Drought is considered to be a major threat to soybean production worldwide and yet our current understanding of the effects of drought on soybean productively is largely based on studies on above-ground traits. Although the roots and root nodules are important sensors of drought, the responses of these crucial organs and their drought tolerance features remain poorly characterized. The symbiotic interaction between soybean and rhizobia facilitates atmospheric nitrogen fixation, a process that provides essential nitrogen to support plant growth and development. Symbiotic nitrogen fixation is important for sustainable agriculture, as it sustains plant growth on nitrogen-poor soils and limits fertilizer use for crop nitrogen nutrition. Recent developments have been made in our understanding of the drought impact on soybean root architecture and nodule traits, as well as underpinning transcriptome, proteome and also emerging metabolome information, with a view to improve the selection of more drought-tolerant soybean cultivars and rhizobia in the future. We conclude that the direct screening of root and nodule traits in the field as well as identification of genes, proteins and also metabolites involved in such traits will be essential in order to gain a better understanding of the regulation of root architecture, bacteroid development and lifespan in relation to drought tolerance in soybean.

Drought Stress Responses in Soybean Roots and Nodules.

Science.gov (United States)

Kunert, Karl J; Vorster, Barend J; Fenta, Berhanu A; Kibido, Tsholofelo; Dionisio, Giuseppe; Foyer, Christine H

2016-01-01

Drought is considered to be a major threat to soybean production worldwide and yet our current understanding of the effects of drought on soybean productively is largely based on studies on above-ground traits. Although the roots and root nodules are important sensors of drought, the responses of these crucial organs and their drought tolerance features remain poorly characterized. The symbiotic interaction between soybean and rhizobia facilitates atmospheric nitrogen fixation, a process that provides essential nitrogen to support plant growth and development. Symbiotic nitrogen fixation is important for sustainable agriculture, as it sustains plant growth on nitrogen-poor soils and limits fertilizer use for crop nitrogen nutrition. Recent developments have been made in our understanding of the drought impact on soybean root architecture and nodule traits, as well as underpinning transcriptome, proteome and also emerging metabolome information, with a view to improve the selection of more drought-tolerant soybean cultivars and rhizobia in the future. We conclude that the direct screening of root and nodule traits in the field as well as identification of genes, proteins and also metabolites involved in such traits will be essential in order to gain a better understanding of the regulation of root architecture, bacteroid development and lifespan in relation to drought tolerance in soybean.

Development of Burdock Root Inulin/Chitosan Blend Films Containing Oregano and Thyme Essential Oils

Science.gov (United States)

Cao, Thi Luyen; Yang, So-Young; Song, Kyung Bin

2018-01-01

In this study, inulin (INU) extracted from burdock root was utilized as a new film base material and combined with chitosan (CHI) to prepare composite films. Oregano and thyme essential oils (OT) were incorporated into the INU-CHI film to confer the films with bioactivities. The physical and optical properties as well as antioxidant and antimicrobial activities of the films were evaluated. INU film alone showed poor physical properties. In contrast, the compatibility of INU and CHI demonstrated by the changes in attenuated total reflectance-Fourier transformation infrared spectrum of the INU-CHI film increased tensile strength and elongation at break of the INU film by 8.2- and 3.9-fold, respectively. In addition, water vapor permeability, water solubility, and moisture content of the films decreased proportionally with increasing OT concentration in the INU-CHI film. Incorporation of OT also increased the opacity of a and b values and decreased the L value of the INU-CHI films. All INU-CHI films containing OT exhibited antioxidant and antimicrobial properties. Particularly, the INU-CHI film with 2.0% OT exhibited the highest 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid), 2,2-diphenyl-1-picrylhydrazyl radical scavenging, and antimicrobial activities against four pathogens. Thus, the INU-CHI film containing OT developed in this study might be utilized as an active packaging material in the food industry. PMID:29301339

Development of Burdock Root Inulin/Chitosan Blend Films Containing Oregano and Thyme Essential Oils.

Science.gov (United States)

Cao, Thi Luyen; Yang, So-Young; Song, Kyung Bin

2018-01-03

In this study, inulin (INU) extracted from burdock root was utilized as a new film base material and combined with chitosan (CHI) to prepare composite films. Oregano and thyme essential oils (OT) were incorporated into the INU-CHI film to confer the films with bioactivities. The physical and optical properties as well as antioxidant and antimicrobial activities of the films were evaluated. INU film alone showed poor physical properties. In contrast, the compatibility of INU and CHI demonstrated by the changes in attenuated total reflectance-Fourier transformation infrared spectrum of the INU-CHI film increased tensile strength and elongation at break of the INU film by 8.2- and 3.9-fold, respectively. In addition, water vapor permeability, water solubility, and moisture content of the films decreased proportionally with increasing OT concentration in the INU-CHI film. Incorporation of OT also increased the opacity of a and b values and decreased the L value of the INU-CHI films. All INU-CHI films containing OT exhibited antioxidant and antimicrobial properties. Particularly, the INU-CHI film with 2.0% OT exhibited the highest 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid), 2,2-diphenyl-1-picrylhydrazyl radical scavenging, and antimicrobial activities against four pathogens. Thus, the INU-CHI film containing OT developed in this study might be utilized as an active packaging material in the food industry.

Novel Technique to improve the pH of Acidic Barren Soil using Electrokinetic-bioremediation with the application of Vetiver Grass

Science.gov (United States)

Azhar, A. T. S.; Nabila, A. T. A.; Nurshuhaila, M. S.; Zaidi, E.; Azim, M. A. M.; Zahin, A. M. F.

2016-11-01

Residual acidic slopes which are not covered by vegetation greatly increases the risk of soil erosion. In addition, low soil pH can bring numerous problems such as Al and Fe toxicity, land degradation issues and some problems related to vegetation. In this research, a series of electrokinetic bioremediation (EK-Bio) treatments using Bacillus sphaericus, Bacillus subtilis and Pseudomonas putida with a combination of Vetiver grass were performed in the laboratory. Investigations were conducted for 14 days and included the observation of changes in the soil pH and the mobilization of microorganism cells through an electrical gradient of 50 V/m under low pH. Based on the results obtained, this study has successfully proven that the pH of soil increases after going through electrokinetic bioremediation (EK-Bio). The treatment using Bacillus sphaericus increases the pH from 2.95 up to 4.80, followed by Bacillus subtilis with a value of 4.66. Based on the overall performance, Bacillus sphaericus show the highest number of bacterial cells in acidic soil with a value of 6.6 × 102 cfu/g, followed by Bacillus subtilis with a value of 5.7 × 102 cfu/g. In conclusion, Bacillus sphaericus and Bacillus subtilis show high survivability and is suitable to be used in the remediation of acidic soil.

Two-Rooted Maxillary First Molars with Two Canals: A Case Series

OpenAIRE

Shakouie, Sahar; Mokhtari, Hadi; Ghasemi, Negin; Gholizadeh, Seddigheh

2013-01-01

Thorough understanding of the anatomic and internal morphology of a root canal system is absolutely essential for the success of endodontic treatment. Since permanent maxillary first molars have shown variation in internal anatomy, morphology, this tooth has been reviewed extensively. Presence of two canals in a two-rooted maxillary first molar has rarely been reported in studies describing tooth and root canal anatomies. In this report, three cases are presented, which involve the root canal...

Nutrition and adventitious rooting in woody plants

Directory of Open Access Journals (Sweden)

Fernanda Bortolanza Pereira

2016-09-01

Full Text Available Vegetative propagation success of commercial genotypes via cutting techniques is related to several factors, including nutritional status of mother trees and of propagation material. The nutritional status determines the carbohydrate quantities, auxins and other compounds of plant essential metabolism for root initiation and development. Each nutrient has specific functions in plant, acting on plant structure or on plant physiology. Although the importance of mineral nutrition for success of woody plants vegetative propagation and its relation with adventitious rooting is recognized, the role of some mineral nutrients is still unknown. Due to biochemical and physiological complexity of adventitious rooting process, there are few researches to determine de role of nutrients on development of adventitious roots. This review intends to explore de state of the art about the effect of mineral nutrition on adventitious rooting of woody plants.

Two-rooted maxillary first molars with two canals: a case series.

Science.gov (United States)

Shakouie, Sahar; Mokhtari, Hadi; Ghasemi, Negin; Gholizadeh, Seddigheh

2013-01-01

Thorough understanding of the anatomic and internal morphology of a root canal system is absolutely essential for the success of endodontic treatment. Since permanent maxillary first molars have shown variation in internal anatomy, morphology, this tooth has been reviewed extensively. Presence of two canals in a two-rooted maxillary first molar has rarely been reported in studies describing tooth and root canal anatomies. In this report, three cases are presented, which involve the root canal treatment of maxillary first molars with fusion of the two buccal roots.

Combined Use Of Cs-137 And Be-7 To Assess The Effectiveness Of Soil Conservation For Vetiver Grass Strips In Coffee Crop Lands In The Central Highlands

International Nuclear Information System (INIS)

Phan Son Hai; Nguyen Dao; Tran Van Hoa; Tran Dinh Khoa; Nguyen Thi Mui; Trinh Cong Tu

2007-01-01

The combined use of 137 Cs and 7 Be for assessment of medium- and short-term soil erosion rates for sloping lands with and without soil conservation technologies in the Central Highlands of Vietnam has been carried out. Studies were performed at five 128 m 2 runoff plots and two 0.5 ha coffee plots with the slope gradient of about 25%. Experiments carried out at runoff plots showed that: (i) In the case of low erosion rates (less than 30 t ha -1 y -1 ), soil erosion rates estimated by 7 Be technique using the Profile-Distribution Model were consistent with net soil erosion rates obtained by runoff plots when particle size correction factor P is taken into account; (ii) In the case of high erosion rates (greater than 30 t ha -1 y -1 ), the conversion model overestimated soil erosion rates when P was not allowed for, and underestimated erosion rate when P factor was taken into account. Studies carried out at two 0.5 ha coffee plots showed that: (i) For the plot without soil conservation, soil erosion occurred for all sampling points with medium-term erosion rates ranging between 1.2 t ha -1 y -1 and 35 t ha -1 y -1 (the average erosion rate was 22.7 ± 1.2 t ha -1 y -1 ). The short term soil erosion rate estimated by 7 Be technique was 32.7 ± 6.1 t ha -1 y -1 for this plot; (ii) For the plot with the last seven year presence of Vetiver strips, about 93% of the area suffered from medium term erosion with erosion rates varying from 3 t ha -1 y -1 to 33 t ha -1 y -1 (the mean is 22.2 t ha -1 y -1 ), and medium term deposition occurred for only 7% of the area with the deposition rates ranging between 1.3 and 1.4 t ha -1 y -1 , resulting in the net erosion rate of 20.4 ± 0.6 t ha -1 y -1 . The short term soil erosion rate at this plot estimated by 7 Be technique was 2.3 t ha -1 y -1 . By using Vetiver strips as a soil conservation technology, soil erosion was almost controlled and the net erosion rate was reduced from 32.7 t ha -1 y -1 to 2.3 t ha -1 y -1 . (author)

Uranium uptake of Vetiveria zizanioides (L.) Nash

International Nuclear Information System (INIS)

Luu Viet Hung; Maslov, O.D.; Trinh Thi Thu My; Phung Khac Nam Ho; Dang Duc Nhan

2010-01-01

Uranium uptake of vetiver grass (Vetiveria zizanioides (L.) Nash) from Eutric Fluvisols (AK), Albic Acrisols (BG), Dystric Fluvisols (HP) and Ferralic Acrisols (TC) in northern Vietnam is assessed. The soils were mixed with aqueous solution of uranyl nitrate to make soils contaminated with uranium at 0, 50, 100, 250 mg/kg before planting the grass. The efficiency of uranium uptake by the grass was assessed based on the soil-to-plant transfer factor (TF U , kg·kg -1 ). It was found that the TF U values are dependent upon the soils properties. CEC facilitates the uptake and the increased soil pH could reduce the uptake and translocation of uranium in the plant. Organic matter content, as well as iron and potassium, inhibits the uranium uptake of the grass. It was revealed that the lower fertile soil, the higher uranium uptake. The translocation of uranium in root for all the soil types studied is almost higher than that in its shoot. It seems that vetiver grass could potentially be used for the purpose of phytoremediation of soils contaminated with uranium

Uptake Evaluation Of Glass house Grown Grasses In Radio phyto remediation Of Caesium-Contaminated Soil

International Nuclear Information System (INIS)

Zal U'yun Wan Mahmood; Nur Humaira' Lau Abdullah; Khairuddin Abdul Rahim

2014-01-01

A glass house experiment was performed to evaluate the uptake of grasses viz. Napier and Vetiver in radiophytoremediation of caesium-contaminated soil. The glass house radiophytoremediation experiment was designed according to the Randomized Complete Block Design (RCBD). The grasses were grown in troughs filled with soil mixed with a known specific activity of 134 Cs. Initial Cs activity and activity after different cultivation time intervals of 1, 3, 6 and 9 months were analyzed using gamma spectrometer direct measurement. The results showed the uptake of caesium by Napier and Vetiver after 9 months with the transfer factors (TF) were 4.70 and 6.25, respectively. Meanwhile, the remediation of caesium from contaminated soil at the same time was 95.25 % (Napier) and 95.58 % (Vetiver). Both grasses have been found to accumulate caesium, with Vetiver accumulating higher than Napier. Thus, the present study suggests that Vetiver could be used as a potential plant for radiophytoremediation of caesium. (author)

Strigolactones suppress adventitious rooting in Arabidopsis and pea.

Science.gov (United States)

Rasmussen, Amanda; Mason, Michael Glenn; De Cuyper, Carolien; Brewer, Philip B; Herold, Silvia; Agusti, Javier; Geelen, Danny; Greb, Thomas; Goormachtig, Sofie; Beeckman, Tom; Beveridge, Christine Anne

2012-04-01

Adventitious root formation is essential for the propagation of many commercially important plant species and involves the formation of roots from nonroot tissues such as stems or leaves. Here, we demonstrate that the plant hormone strigolactone suppresses adventitious root formation in Arabidopsis (Arabidopsis thaliana) and pea (Pisum sativum). Strigolactone-deficient and response mutants of both species have enhanced adventitious rooting. CYCLIN B1 expression, an early marker for the initiation of adventitious root primordia in Arabidopsis, is enhanced in more axillary growth2 (max2), a strigolactone response mutant, suggesting that strigolactones restrain the number of adventitious roots by inhibiting the very first formative divisions of the founder cells. Strigolactones and cytokinins appear to act independently to suppress adventitious rooting, as cytokinin mutants are strigolactone responsive and strigolactone mutants are cytokinin responsive. In contrast, the interaction between the strigolactone and auxin signaling pathways in regulating adventitious rooting appears to be more complex. Strigolactone can at least partially revert the stimulatory effect of auxin on adventitious rooting, and auxin can further increase the number of adventitious roots in max mutants. We present a model depicting the interaction of strigolactones, cytokinins, and auxin in regulating adventitious root formation.

Experimentally reduced root-microbe interactions reveal limited plasticity in functional root traits in Acer and Quercus.

Science.gov (United States)

Lee, Mei-Ho; Comas, Louise H; Callahan, Hilary S

2014-02-01

Interactions between roots and soil microbes are critical components of below-ground ecology. It is essential to quantify the magnitude of root trait variation both among and within species, including variation due to plasticity. In addition to contextualizing the magnitude of plasticity relative to differences between species, studies of plasticity can ascertain if plasticity is predictable and whether an environmental factor elicits changes in traits that are functionally advantageous. To compare functional traits and trait plasticities in fine root tissues with natural and reduced levels of colonization by microbial symbionts, trimmed and surface-sterilized root segments of 2-year-old Acer rubrum and Quercus rubra seedlings were manipulated. Segments were then replanted into satellite pots filled with control or heat-treated soil, both originally derived from a natural forest. Mycorrhizal colonization was near zero in roots grown in heat-treated soil; roots grown in control soil matched the higher colonization levels observed in unmanipulated root samples collected from field locations. Between-treatment comparisons revealed negligible plasticity for root diameter, branching intensity and nitrogen concentration across both species. Roots from treated soils had decreased tissue density (approx. 10-20 %) and increased specific root length (approx. 10-30 %). In contrast, species differences were significant and greater than treatment effects in traits other than tissue density. Interspecific trait differences were also significant in field samples, which generally resembled greenhouse samples. The combination of experimental and field approaches was useful for contextualizing trait plasticity in comparison with inter- and intra-specific trait variation. Findings that root traits are largely species dependent, with the exception of root tissue density, are discussed in the context of current literature on root trait variation, interactions with symbionts and recent

Primary root protophloem differentiation requires balanced phosphatidylinositol-4,5-biphosphate levels and systemically affects root branching.

Science.gov (United States)

Rodriguez-Villalon, Antia; Gujas, Bojan; van Wijk, Ringo; Munnik, Teun; Hardtke, Christian S

2015-04-15

Protophloem is a specialized vascular tissue in growing plant organs, such as root meristems. In Arabidopsis mutants with impaired primary root protophloem differentiation, brevis radix (brx) and octopus (ops), meristematic activity and consequently overall root growth are strongly reduced. Second site mutation in the protophloem-specific presumed phosphoinositide 5-phosphatase cotyledon vascular pattern 2 (CVP2), but not in its homolog CVP2-like 1 (CVL1), partially rescues brx defects. Consistent with this finding, CVP2 hyperactivity in a wild-type background recreates a brx phenotype. Paradoxically, however, while cvp2 or cvl1 single mutants display no apparent root defects, the root phenotype of cvp2 cvl1 double mutants is similar to brx or ops, although, as expected, cvp2 cvl1 seedlings contain more phosphatidylinositol-4,5-biphosphate. Thus, tightly balanced phosphatidylinositol-4,5-biphosphate levels appear essential for proper protophloem differentiation. Genetically, OPS acts downstream of phosphatidylinositol-4,5-biphosphate levels, as cvp2 mutation cannot rescue ops defects, whereas increased OPS dose rescues cvp2 cvl1 defects. Finally, all three mutants display higher density and accelerated emergence of lateral roots, which correlates with increased auxin response in the root differentiation zone. This phenotype is also created by application of peptides that suppress protophloem differentiation, clavata3/embryo surrounding region 26 (CLE26) and CLE45. Thus, local changes in the primary root protophloem systemically shape overall root system architecture. © 2015. Published by The Company of Biologists Ltd.

Phytoextractor Potential of Cultivated Species in Industrial Area Contaminated by Lead

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Silvânia Maria de Souza Gomes Nascimento

Full Text Available ABSTRACT: High growth rate is one of the criteria used for the selection of species to be used in metal phytoextraction programs. This study was carried out to characterize the growth characteristics of sunflower (Helianthus annuus L., castor bean (Ricinus communis L., corn (Zea mays L, and vetiver [Vetiveria zizanioides (L. Nash] grown on a soil contaminated with lead (Pb, with and without pH correction, to improve agronomic practices regarding phytoremediation programs. The experiment was designed as a randomized block with four replications; treatments were arranged in a split-plot arrangement, with the main plot representing the species (sunflower, castor bean, corn, and vetiver, with or without pH correction and soil fertilization, and the split-plot representing harvest periods (60, 90, and 120 days after planting. After variance analysis and mean comparison analysis of the data by the Tukey test (p≤0.05, a significant effect was observed from soil pH correction for vetiver in all of the growth variables evaluated, except for the leaf area index at 120 days after planting (DAP. Castor bean and sunflower plants in soil with high acidity conditions, without pH correction (pH˂4.0, were affected by soil Pb levels. Corn plants benefited from soil pH correction and had improved results for the plant height, diameter, and leaf area variables at 60 and 90 DAP, as well as leaf area index at 60 DAP. There was no increase in these variables between the harvest periods evaluated. Regarding phytoextraction potential, corn and vetiver had the highest Pb translocation to the plant shoots at 90 DAP and were therefore considered the most suitable species for phytoremediation of the area under study. Overall, liming was essential for improving species biomass production for all the species studied in soils with high Pb availability in solution.

Root Growth and Water distribution in living walls

DEFF Research Database (Denmark)

Jørgensen, Lars

of functional living walls and this thesis is a first step of understanding the essential but hidden part inside the growing medium, i.e. the roots. Ensuring successful performance of the plants in a living wall is complex and the choice of growing medium, plant species and planting position are important....... for root growth. This thesis investigates the correlations between the growing media and root and shoots growth, and studies root growth patterns of different plant species and effects of planting position and root interactions of plants growing in living walls. There are a number of challenges with living...... walls; the vertical orientation of the growing medium, plants are growing vertically above or below each other in a limited rooting volume; there is an increased exposure to weather and the plants can react differently to water conditions and competition from other plants. Plant growth is the core...

Stochastic soil water dynamics of phreatophyte vegetation with dimorphic root systems

NARCIS (Netherlands)

Vervoort, R.W.; Zee, van der S.E.A.T.M.

2009-01-01

As the direct uptake of deep groundwater by vegetation may be essential in semiarid regions, we incorporated this process in stochastic root zone water balance models. The direct water uptake by vegetation via deep tap roots is simulated using one additional empirical parameter. This is considered

Acaricidal activity of Derris floribunda essential oil and its main constituent

Institute of Scientific and Technical Information of China (English)

Ana Claudia Fernandes Amaral; Aline de S.Ramos; Márcia Reis Pena; José Luiz Pinto Ferreira; Jean Michel S.Menezes; Geraldo J.N.Vasconcelos; Neliton Marques da Silva

2017-01-01

Objective:To evaluate the acaricidal activity of the essential oil obtained from roots of Derrisfloribunda (D.floribunda) (Miq.) Benth,and its main constituent nerolidol against the Mexican mite Tetranychus mexicanus (T.mexicanus) (McGregor).Methods:The essential oil from the roots of D.floribunda collected in the Amazon region (Brazil) was obtained by hydrodistillation.Its chemical composition was determined by GC-MS analysis.The acaricidal activities of this essential oil and nerolidol,were evaluated by recording the number of dead females (mortality) and eggs (fertility).Results:The essential oil showed sesquiterpenes as major volatile components.Nerolidol,the main component,represented 68.5％ of the total composition of the essential oil.D.floribunda essential oil and nerolidol showed acaricidal activity,with LC50 of 9.61 μg/mL air and 9.2 μg/mL air,respectively,over a 72 h period.In addition,both the essential oil and nerolidol significantly reduced the fecundity of T.mexicanus.Contusions:Due to the economic importance of T.mexicanus and the lack of new pesticides,our data are very promising in the search for efficient and safer acaricidal products.Furthermore,this is the first report about the chemical composition and bioactivity of the essential oil of the Amazon plant species D.floribunda.

Essentials of Endodontic Microsurgery

Science.gov (United States)

2010-04-01

Holtzman DJ, et al. Quality of root-end preparations using ultrasonic and rotary instrumentation in cadavers. J Endod 2000;26:281. 39. Peters CI...00-00-2010 to 00-00-2010 4. TITLE AND SUBTITLE Essentials of Endodontic Microsurgery 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT... Endodontic Program,Harvard School of Dental Medicine,Boston,MA 8. PERFORMING ORGANIZATION REPORT NUMBER 9. SPONSORING/MONITORING AGENCY NAME(S) AND

Unusual anatomy of maxillary central incisor with two roots

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T S Ashwini Shivakumar

2012-01-01

Full Text Available Introduction: Knowledge of root canal morphology is essential for successful endodontic therapy. Failure to recognize unusual root canal anatomy may lead to unsuccessful endodontic treatment. Case Report: This case report describes the successful endodontic treatment of the maxillary central incisor with unusual anatomy of two roots and two root canals. A 23-year-old male patient was referred for dental consultation with discoloration of the maxillary right central incisor with periapical lesion, which revealed unusual anatomy of root on radiographic examination, and was confirmed upon exploration. Discussion: As described by Vertucci, the maxillary central incisor presents a single root and single root canal in 100% of the cases. However, few cases of maxillary central incisors with two canals were reported in the literature, most of which were associated with developmental anomalies like fusion, germination or dens invaginatus. Clinician should be aware of the unusual anatomical variations that should be detected by the different diagnostic resources available.

Responses of grapevine rootstocks to drought through altered root system architecture and root transcriptomic regulations.

Science.gov (United States)

Yıldırım, Kubilay; Yağcı, Adem; Sucu, Seda; Tunç, Sümeyye

2018-06-01

, expression increase in osmolyte producer genes revealed another transcriptomic regulation enabling effective root osmotic adjustment under drought stress. The third mechanism was linked to root suberization with upregulation of transcripts functional in wax producing enzymes (Caffeic acid 3-O-methyltransferase, Eceriferum3, 3-ketoacyl-CoAsynthase). These three transcriptomic regulations were suggested to provide essential energy and water preservation to the roots of 110R for its effective RSA regulation under drought. This phenotypic and genotypic knowledge could be used to develop root-dependent drought tolerant grapevines in breeding programs and could facilitate elucidation of genetic regulations behind RSA alteration in other plants. Copyright © 2018 Elsevier Masson SAS. All rights reserved.

Evaluation and Comparison of the Position of the Apical Constriction in Single-root and Multiple-root Teeth

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Alireza Farhad

2017-12-01

Full Text Available Introduction: Precise knowledge of the location of the apical constriction is essential to root canal treatment and long-term prognosis. Considering the differences in the apical constriction and size of the roots in single- and multiple-root teeth in various races, examination and comparison of the location of the apical constriction in single-root and multiple-root teeth are of paramount importance. The present studies aimed to measure and compare the distance of the apical constriction from the apical foramen and anatomical apex in single-root and multiple-root teeth. Materials and Methods: In this cross-sectional study, 60 roots of single-rooted teeth and 60 roots of multiple-rooted teeth were collected from the patients referring to the health centers in Isfahan, Iran. After cleansing and disinfecting the surface of the roots, the surface of the teeth was washed with hypochlorite. Based on the direction of the apical foramen, a longitudinal cut was made in the same direction, and the roots were examined microscopically at the magnification of 25. Following that, the distance of the apical constriction from the apical foramen and anatomical apex was measured using a digital camera. In addition, mean and standard deviation of the obtained distance values were determined. Distances in the single-root and multiple-root teeth were compared using independent t-test, at the significance level of Results: Mean distance between the apical constriction and apical foramen was 0.86±0.33 mm in the single-root teeth and 0.072±0.27 mm in the multiple-root teeth. Mean distance between the apical constriction and anatomical apex was 1.14±0.36 mm in the single-root teeth and 1.03±0.36 mm in the multiple-root teeth. Moreover, the results of independent t-test showed the distance of the apical constriction from the apical foramen to be significant between single-root and multiple-rooted teeth (P=0.013. However, the distance between the apical constriction

Artificial root foraging optimizer algorithm with hybrid strategies

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Yang Liu

2017-02-01

Full Text Available In this work, a new plant-inspired optimization algorithm namely the hybrid artificial root foraging optimizion (HARFO is proposed, which mimics the iterative root foraging behaviors for complex optimization. In HARFO model, two innovative strategies were developed: one is the root-to-root communication strategy, which enables the individual exchange information with each other in different efficient topologies that can essentially improve the exploration ability; the other is co-evolution strategy, which can structure the hierarchical spatial population driven by evolutionary pressure of multiple sub-populations that ensure the diversity of root population to be well maintained. The proposed algorithm is benchmarked against four classical evolutionary algorithms on well-designed test function suites including both classical and composition test functions. Through the rigorous performance analysis that of all these tests highlight the significant performance improvement, and the comparative results show the superiority of the proposed algorithm.

A statistical approach to root system classification.

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Gernot eBodner

2013-08-01

Full Text Available Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for plant functional type identification in ecology can be applied to the classification of root systems. We demonstrate that combining principal component and cluster analysis yields a meaningful classification of rooting types based on morphological traits. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. Biplot inspection is used to determine key traits and to ensure stability in cluster based grouping. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Three rooting types emerged from measured data, distinguished by diameter/weight, density and spatial distribution respectively. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement

Essential Oil Composition of Cirsium arvense L. Produced in Different Climate and Soil Properties

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Narges Amiri

2018-05-01

Full Text Available This study investigated the quantitative and qualitative effects of climate and soil properties on essential oil content and composition of Cirsium arvense L. (Asteraceae, which is an important medicinal plant. Root, stem, and leaf tissues were collected from plants found in four regions (Shahrekord, Farsan, Chelgerd and Ardal of the Chaharmahal and Bakhtiari Province, Iran. GC/MS analysis revealed that the main constituents of essential oils from the various populations were nonadecane, β-citronellol, camphor, heneicosane and phytol. The highest levels of nonadecane (40.1-42% and camphor (18.1-18.4% were obtained from roots collected from the Chelgerd region, the most levels of β-citronellol (24.9-25.01% were obtained from leaves from the Chelgerd region, and the most levels of heneicosane (14.4-15.6% and phytol (11.8-12.58% were obtained from stems from the Shahrekord region. The most amount of essential oil (0.34-0.33% was obtained from roots growing in clay soil in the Chelgerd region. Both climate and soil properties had significant effects on the essential oil of C. arvense. The highestt essential oil contents were obtained from plants growing in clay soil, which seemed to have a greater capacity to hold water and nutrients, both of which promote plant growth and essential oil production.

Constituents of the essential oils of Cinnamomum parthenoxylon (Jack) Nees from Vietnam

NARCIS (Netherlands)

Dung, N.X.; Moi, La Dinh; Hung, N.D.; Leclercq, P.A.

1995-01-01

The essential oils obtained by steam distillation of the root bark and wood of Cinnamomum parthenoxylon (Jack) Nees growing wild in Vietnam were investigated by a combination of GC and GC/MS. More than 30 compounds in the root bark oil, and about 20 components in the wood oil have been identified.

Tree root systems and nutrient mobilization

DEFF Research Database (Denmark)

Boyle, Jim; Rob, Harrison; Raulund-Rasmussen, Karsten

sometimes stored at depth. Other recent studies on potential release of nutrients due to chemical weathering indicate the importance of root access to deep soil layers. Release profi les clearly indicate depletion in the top layers and a much higher potential in B and C horizons. Review of evaluations......Roots mobilize nutrients via deep penetration and rhizosphere processes inducing weathering of primary minerals. These contribute to C transfer to soils and to tree nutrition. Assessments of these characteristics and processes of root systems are important for understanding long-term supplies...... of nutrient elements essential for forest growth and resilience. Research and techniques have signifi cantly advanced since Olof Tamm’s 1934 base mineral index for Swedish forest soils, and basic nutrient budget estimates for whole-tree harvesting systems of the 1970s. Recent research in areas that include...

Ecology of root colonizing Massilia (Oxalobacteraceae.

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Maya Ofek

Full Text Available BACKGROUND: Ecologically meaningful classification of bacterial populations is essential for understanding the structure and function of bacterial communities. As in soils, the ecological strategy of the majority of root-colonizing bacteria is mostly unknown. Among those are Massilia (Oxalobacteraceae, a major group of rhizosphere and root colonizing bacteria of many plant species. METHODOLOGY/PRINCIPAL FINDINGS: The ecology of Massilia was explored in cucumber root and seed, and compared to that of Agrobacterium population, using culture-independent tools, including DNA-based pyrosequencing, fluorescence in situ hybridization and quantitative real-time PCR. Seed- and root-colonizing Massilia were primarily affiliated with other members of the genus described in soil and rhizosphere. Massilia colonized and proliferated on the seed coat, radicle, roots, and also on hyphae of phytopathogenic Pythium aphanidermatum infecting seeds. High variation in Massilia abundance was found in relation to plant developmental stage, along with sensitivity to plant growth medium modification (amendment with organic matter and potential competitors. Massilia absolute abundance and relative abundance (dominance were positively related, and peaked (up to 85% at early stages of succession of the root microbiome. In comparison, variation in abundance of Agrobacterium was moderate and their dominance increased at later stages of succession. CONCLUSIONS: In accordance with contemporary models for microbial ecology classification, copiotrophic and competition-sensitive root colonization by Massilia is suggested. These bacteria exploit, in a transient way, a window of opportunity within the succession of communities within this niche.

Ecology of root colonizing Massilia (Oxalobacteraceae).

Science.gov (United States)

Ofek, Maya; Hadar, Yitzhak; Minz, Dror

2012-01-01

Ecologically meaningful classification of bacterial populations is essential for understanding the structure and function of bacterial communities. As in soils, the ecological strategy of the majority of root-colonizing bacteria is mostly unknown. Among those are Massilia (Oxalobacteraceae), a major group of rhizosphere and root colonizing bacteria of many plant species. The ecology of Massilia was explored in cucumber root and seed, and compared to that of Agrobacterium population, using culture-independent tools, including DNA-based pyrosequencing, fluorescence in situ hybridization and quantitative real-time PCR. Seed- and root-colonizing Massilia were primarily affiliated with other members of the genus described in soil and rhizosphere. Massilia colonized and proliferated on the seed coat, radicle, roots, and also on hyphae of phytopathogenic Pythium aphanidermatum infecting seeds. High variation in Massilia abundance was found in relation to plant developmental stage, along with sensitivity to plant growth medium modification (amendment with organic matter) and potential competitors. Massilia absolute abundance and relative abundance (dominance) were positively related, and peaked (up to 85%) at early stages of succession of the root microbiome. In comparison, variation in abundance of Agrobacterium was moderate and their dominance increased at later stages of succession. In accordance with contemporary models for microbial ecology classification, copiotrophic and competition-sensitive root colonization by Massilia is suggested. These bacteria exploit, in a transient way, a window of opportunity within the succession of communities within this niche.

Chemical Composition and Biological Investigations of Eryngium triquetrum Essential Oil from Algeria.

Science.gov (United States)

Medbouhi, Ali; Merad, Nadjiya; Khadir, Abdelmounaim; Bendahou, Mourad; Djabou, Nassim; Costa, Jean; Muselli, Alain

2018-01-01

The chemical composition, antibacterial and antioxidant activities of the essential oil obtained from Eryngium triquetrum from Algeria were studied. The chemical composition of sample oils from 25 locations was investigated using GC-FID and GC/MS. Twenty-four components representing always more than 87% were identified in essential oils from total aerial parts of plants, stems, flowers and roots. Falcarinol is highly dominant in the essential oil from the roots (95.5%). The relative abundance of falcarinol in the aerial parts correlates with the phenological stages of the plant. Aerial parts of E. triquetrum produce an essential oil dominated by falcarinol during the early flowering stage, and then there is a decrease in falcarinol and rebalancing of octanal during the flowering stage. To our knowledge, the present study is the first report of the chemical composition of E. triquetrum essential oil. Evaluation of the antibacterial activity by means of the paper disc diffusion method and minimum inhibitory concentration assays, showed a moderate efficiency of E. triquetrum essential oil. Using the DPPH method, the interesting antioxidant activity of E. triquetrum essential oil was established. These activities could be attributed to the dominance of falcarinol. The outcome of our literature search on the occurrence of falcarinol in essential oils suggests that E. triquetrum from Algeria could be considered as a possible source of natural falcarinol. © 2018 Wiley-VHCA AG, Zurich, Switzerland.

C-shaped root canal in a maxillary first molar: a case report.

Science.gov (United States)

Yilmaz, Z; Tuncel, B; Serper, A; Calt, S

2006-02-01

This case report presents an unusual C-shaped root canal system in a maxillary first molar tooth. Although C-shaped root canals are most frequently seen in the mandibular second molar, they may also appear in maxillary molars. A literature search revealed only a few case reports of C-shaped root canal systems in maxillary molars. The present case describes a C-shaped canal in the buccal root of a maxillary first molar. The endodontic access cavity displayed two canal orifices, one leading to the canal system in the buccal root, the other into the palatal root canal system. In the buccal root, what appeared to be the mesial and distal canals joined to form a single C-shaped canal. --Careful examination of radiographs and the internal anatomy of teeth is essential.-- The location and morphology of root canals should be identified at high magnification under the microscope.

Design and Use of a Learning Object for Finding Complex Polynomial Roots

Science.gov (United States)

Benitez, Julio; Gimenez, Marcos H.; Hueso, Jose L.; Martinez, Eulalia; Riera, Jaime

2013-01-01

Complex numbers are essential in many fields of engineering, but students often fail to have a natural insight of them. We present a learning object for the study of complex polynomials that graphically shows that any complex polynomials has a root and, furthermore, is useful to find the approximate roots of a complex polynomial. Moreover, we…

LINK BETWEEN SKELETAL RELATIONS AND ROOT RESORPTION IN ORTHODONTIC PATIENTS

Directory of Open Access Journals (Sweden)

Cristina Teodora Preoteasa

2011-09-01

Full Text Available External root resorption is one of the possible complications of the orthodontic treatment, severe cases presenting a higher frequency. The aim of the present study was to test the existence of a relation between the severity of root resorption and the sagittal or vertical skeletal relations. A cross-sectional study was conducted on a group of 55 patients with fixed orthodontic devices, applied bimaxillarily for at least 6 months. The sample presented mostly mild or moderate apical root resorption, with an average value of 1.31 mm (standard deviation 0.60. Patients with abnormal sagittal skeletal relations presented a more severe root resorption compared to those with a normal pattern. The tendency towards more severe external root resorption was also noticed in cases with mandibular clockwise rotation and hiperdivergent facial pattern. A good knowledge on the variables associated to severe root resorption is essential for the identification of the high risk patients, as well as for the selection of the best suited treatment alternative in terms of low probability of root resorption occurrence.

Antimicrobial Activity Of Essential Oils Of Xylopia aethiopica ...

African Journals Online (AJOL)

Xylopia aethiopica is a medicinal plant of great repute in West Africa which produces a variety of complex chemical compounds. The fresh and dried fruits, leaf, stem bark and root bark essential oils showed various degrees of activity against the Gram positive bacteria, Bacillus subtilis and Staphylococcus aureus, the Gram ...

Automated Root Tracking with "Root System Analyzer"

Science.gov (United States)

Schnepf, Andrea; Jin, Meina; Ockert, Charlotte; Bol, Roland; Leitner, Daniel

2015-04-01

Crucial factors for plant development are water and nutrient availability in soils. Thus, root architecture is a main aspect of plant productivity and needs to be accurately considered when describing root processes. Images of root architecture contain a huge amount of information, and image analysis helps to recover parameters describing certain root architectural and morphological traits. The majority of imaging systems for root systems are designed for two-dimensional images, such as RootReader2, GiA Roots, SmartRoot, EZ-Rhizo, and Growscreen, but most of them are semi-automated and involve mouse-clicks in each root by the user. "Root System Analyzer" is a new, fully automated approach for recovering root architectural parameters from two-dimensional images of root systems. Individual roots can still be corrected manually in a user interface if required. The algorithm starts with a sequence of segmented two-dimensional images showing the dynamic development of a root system. For each image, morphological operators are used for skeletonization. Based on this, a graph representation of the root system is created. A dynamic root architecture model helps to determine which edges of the graph belong to an individual root. The algorithm elongates each root at the root tip and simulates growth confined within the already existing graph representation. The increment of root elongation is calculated assuming constant growth. For each root, the algorithm finds all possible paths and elongates the root in the direction of the optimal path. In this way, each edge of the graph is assigned to one or more coherent roots. Image sequences of root systems are handled in such a way that the previous image is used as a starting point for the current image. The algorithm is implemented in a set of Matlab m-files. Output of Root System Analyzer is a data structure that includes for each root an identification number, the branching order, the time of emergence, the parent

Rooting and acclimatization of micropropagated marubakaido apple rootstock using Adesmia latifolia rhizobia.

Science.gov (United States)

Muniz, Aleksander Westphal; de Sá, Enilson Luiz; Dalagnol, Gilberto Luíz; Filho, João Américo

2013-01-01

In vitro rooting and the acclimatization of micropropagated rootstocks of apple trees is essential for plant development in the field. The aim of this work was to assess the use of rhizobia of Adesmia latifolia to promote rooting and acclimatization in micropropagated Marubakaido apple rootstock. An experiment involving in vitro rooting and acclimatization was performed with four strains of rhizobium and two controls, one with and the other without the addition of synthetic indoleacetic acid. The inoculated treatments involved the use of sterile inoculum and inoculum containing live rhizobia. The most significant effects on the rooting rate, primary-root length, number of roots, root length, fresh-shoot biomass, and fresh-root biomass were obtained by inoculation with strain EEL16010B and with synthetic indole acetic acid. However, there was no difference in the growth of apple explants in the acclimatization experiments. Strain EEL16010B can be used to induce in vitro rooting of the Marubakaido rootstock and can replace the use of synthetic indoleacetic acid in the rooting of this cultivar.

Determination of microelement distribution in different components of soil-plant system

International Nuclear Information System (INIS)

Luu Viet Hung; Maslov, O.D.; Gustova, M.V.; Trinh Thi Thu My; Phung Khac Nam Ho

2011-01-01

Leaves, stem, and roots of two shrub types: tea (Camellia sinensis), sweet leaf (Sauropus androgynus) and two herb types: vetiver grass (Vetiveria zizanioides L.Nash), maize (Zea mays L) and Thucuc soil where the plants grow, were collected to be studied. Contents of 22 elements in the samples were determined by three methods: XRFA (X-Ray Fluorescence Analysis), GAA (Gamma Activation Analysis), and tracking method to study distribution of these elements in plants and soil-plant relationship. The study was carried out at the Flerov Laboratory of Nuclear Reactions, JINR, Dubna. Distribution of the elements in the soil-plant system was studied

Prevalence, incidence and molecular identification of root-knot ...

African Journals Online (AJOL)

Tomato is a widely grown vegetable in Pakistan. However, its production is severely constrained by root knot nematodes (RKNs). Accurate identification of RKNs is essential for an appropriate control program. The current study evaluated the prevalence, incidence and diversity of RKNs of tomato crops grown in the Khyber ...

Essential oil composition of terminal branches, cones and roots of Tetraclinis articulata from Tunisia.

Science.gov (United States)

Tékaya-Karoui, Ahlem; Ben Jannet, Hichem; Mighri, Zine

2007-08-01

The volatiles obtained separately from the terminal branches (woody and non-woody), cones and roots of Tetraclinis articulata gathered from the area of Zaghouan (Tunisia) have been analyzed by GC and GC-MS. Remarkable differences were found between the constituent percentages of the different studied organs. The main components in the non-woody branches volatile oil were naphtalen (6.6%), Z-muurolene (29.0%) while Camphene (43.2%), Z-beta-ocimene (11.7%), nonanol (5.3%) and a non identified compound (12%) were the main components in the wood branches volatile concentrate. In the cones oil, the most important compounds found were trans-pinacarveol (6.1%), p-cymene-8-ol (10.4%), fenchyl acetate (5.1%), beta-phellandrene (8.1%) and carvone (5.3%). The major constituent in the oil of roots was found to be Camphene (70.2%). A comparison of these data with previous results reported in the literature showed surprising differences.

Strigolactones Suppress Adventitious Rooting in Arabidopsis and Pea1[C][W][OA

Science.gov (United States)

Rasmussen, Amanda; Mason, Michael Glenn; De Cuyper, Carolien; Brewer, Philip B.; Herold, Silvia; Agusti, Javier; Geelen, Danny; Greb, Thomas; Goormachtig, Sofie; Beeckman, Tom; Beveridge, Christine Anne

2012-01-01

Adventitious root formation is essential for the propagation of many commercially important plant species and involves the formation of roots from nonroot tissues such as stems or leaves. Here, we demonstrate that the plant hormone strigolactone suppresses adventitious root formation in Arabidopsis (Arabidopsis thaliana) and pea (Pisum sativum). Strigolactone-deficient and response mutants of both species have enhanced adventitious rooting. CYCLIN B1 expression, an early marker for the initiation of adventitious root primordia in Arabidopsis, is enhanced in more axillary growth2 (max2), a strigolactone response mutant, suggesting that strigolactones restrain the number of adventitious roots by inhibiting the very first formative divisions of the founder cells. Strigolactones and cytokinins appear to act independently to suppress adventitious rooting, as cytokinin mutants are strigolactone responsive and strigolactone mutants are cytokinin responsive. In contrast, the interaction between the strigolactone and auxin signaling pathways in regulating adventitious rooting appears to be more complex. Strigolactone can at least partially revert the stimulatory effect of auxin on adventitious rooting, and auxin can further increase the number of adventitious roots in max mutants. We present a model depicting the interaction of strigolactones, cytokinins, and auxin in regulating adventitious root formation. PMID:22323776

Lemongrass essential oil gel as a local drug delivery agent for the treatment of periodontitis

Science.gov (United States)

Warad, Shivaraj B.; Kolar, Sahana S.; Kalburgi, Veena; Kalburgi, Nagaraj B.

2013-01-01

Background: It has been long recognized that periodontal diseases are infections of the periodontium, comprising the bacterial etiology, an immune response, and tissue destruction. Treatment strategies aiming primarily at suppressing or eliminating specific periodontal pathogens include adjunct use of local and systemic antibiotics as part of nonsurgical periodontal therapy. Unwanted side effects and resistance of microorganisms toward antibiotics due to their widespread use have modified the general perception about their efficacy. Research in phytosciences has revealed various medicinal plants offering a new choice of optional antimicrobial therapy. Cymbopogon citratus, Stapf. (lemongrass) is a popular medicinal plant. At a concentration ≤2%, lemongrass essential oil inhibits the growth of several kinds of microorganisms including periodontal pathogens, especially the reference strains Actinomyces naeslundii and Porphyromonas gingivalis, which were resistant to tetracycline hydrochloride. Aims: To evaluate the efficacy of locally delivered 2% lemongrass essential oil in gel form as an adjunct to scaling and root planing, as compared to scaling and root planing alone for the treatment of chronic periodontitis. Materials and Methods: 2% Lemongrass essential oil gel was prepared and placed in moderate to deep periodontal pockets after scaling and root planing. Results: Statistically significant reduction in probing depth and gingival index and gain in relative attachment level were noted in the experimental group as compared to the control group at 1 and 3 months. Conclusion: Locally delivered 2% lemongrass essential oil gel offers a new choice of safe and effective adjunct to scaling and root planing in periodontal therapy. PMID:24991068

Lemongrass essential oil gel as a local drug delivery agent for the treatment of periodontitis

Directory of Open Access Journals (Sweden)

Shivaraj B Warad

2013-01-01

Full Text Available Background: It has been long recognized that periodontal diseases are infections of the periodontium, comprising the bacterial etiology, an immune response, and tissue destruction. Treatment strategies aiming primarily at suppressing or eliminating specific periodontal pathogens include adjunct use of local and systemic antibiotics as part of nonsurgical periodontal therapy. Unwanted side effects and resistance of microorganisms toward antibiotics due to their widespread use have modified the general perception about their efficacy. Research in phytosciences has revealed various medicinal plants offering a new choice of optional antimicrobial therapy. Cymbopogon citratus, Stapf. (lemongrass is a popular medicinal plant. At a concentration ≤2%, lemongrass essential oil inhibits the growth of several kinds of microorganisms including periodontal pathogens, especially the reference strains Actinomyces naeslundii and Porphyromonas gingivalis, which were resistant to tetracycline hydrochloride. Aims: To evaluate the efficacy of locally delivered 2% lemongrass essential oil in gel form as an adjunct to scaling and root planing, as compared to scaling and root planing alone for the treatment of chronic periodontitis. Materials and Methods: 2% Lemongrass essential oil gel was prepared and placed in moderate to deep periodontal pockets after scaling and root planing. Results: Statistically significant reduction in probing depth and gingival index and gain in relative attachment level were noted in the experimental group as compared to the control group at 1 and 3 months. Conclusion: Locally delivered 2% lemongrass essential oil gel offers a new choice of safe and effective adjunct to scaling and root planing in periodontal therapy.

The Importance of Juvenile Root Traits for Crop Yields

Science.gov (United States)

White, Philip; Adu, Michael; Broadley, Martin; Brown, Lawrie; Dupuy, Lionel; George, Timothy; Graham, Neil; Hammond, John; Hayden, Rory; Neugebauer, Konrad; Nightingale, Mark; Ramsay, Gavin; Thomas, Catherine; Thompson, Jacqueline; Wishart, Jane; Wright, Gladys

2014-05-01

Genetic variation in root system architecture (RSA) is an under-exploited breeding resource. This is partly a consequence of difficulties in the rapid and accurate assessment of subterranean root systems. However, although the characterisation of root systems of large plants in the field are both time-consuming and labour-intensive, high-throughput (HTP) screens of root systems of juvenile plants can be performed in the field, glasshouse or laboratory. It is hypothesised that improving the root systems of juvenile plants can accelerate access to water and essential mineral elements, leading to rapid crop establishment and, consequently, greater yields. This presentation will illustrate how aspects of the juvenile root systems of potato (Solanum tuberosum L.) and oilseed rape (OSR; Brassica napus L.) correlate with crop yields and examine the reasons for such correlations. It will first describe the significant positive relationships between early root system development, phosphorus acquisition, canopy establishment and eventual yield among potato genotypes. It will report the development of a glasshouse assay for root system architecture (RSA) of juvenile potato plants, the correlations between root system architectures measured in the glasshouse and field, and the relationships between aspects of the juvenile root system and crop yields under drought conditions. It will then describe the development of HTP systems for assaying RSA of OSR seedlings, the identification of genetic loci affecting RSA in OSR, the development of mathematical models describing resource acquisition by OSR, and the correlations between root traits recorded in the HTP systems and yields of OSR in the field.

Enhancement of cell wall protein SRPP expression during emergent root hair development in Arabidopsis.

Science.gov (United States)

Uno, Hiroshi; Tanaka-Takada, Natsuki; Sato, Ryosuke; Maeshima, Masayoshi

2017-10-03

SRPP is a protein expressed in seeds and root hairs and is significantly induced in root hairs under phosphate (Pi)-deficient conditions. Root hairs in the knockout mutant srpp-1 display defects, i.e., suppression of cell growth and cell death. Here, we analyzed the expression profile of SRPP during cell elongation of root hairs and compared the transcript levels in several mutants with short root hairs. The mRNA level was increased in wild-type plants and decreased in mutants with short root hairs. Induction of SRPP expression by Pi starvation occurred one or two days later than induction of Pi-deficient sensitive genes, such as PHT1 and PHF1. These results indicate that the expression of SRPP is coordinated with root hair elongation. We hypothesize that SRPP is essential for structural robustness of the cell walls of root hairs.

Volatile constituents and biological activities of the leaf and root of Echinacea species from South Africa

Directory of Open Access Journals (Sweden)

M. Nyalambisa

2017-03-01

It is concluded that root and leaf of this Echinacea species contain volatile oils which varied in their yield and chemical compositions. The essential root oil is non-toxic orally and it demonstrated significant anti-inflammatory and analgesic activities in laboratory animals.

Annosus Root Disease Hazard Rating, Detection, and Management Strategies in the Southeastern United States

Science.gov (United States)

S. A. Alexander

1989-01-01

Annosus root disease (ARD), is the major root disease of pines in the southeastern United States where severely affected trees exhibit growth loss. Assessing the potential damage of ARD is essential for making effective disease control and management decisions. A soil hazard rating system developed to identify potential for tree mortality is described. The Annosus...

Canal Configuration of Mesiobuccal Roots in Permanent Maxillary First Molars in Iranian Population: A Systematic Review.

Science.gov (United States)

Naseri, Mandana; Kharazifard, Mohammad Javad; Hosseinpour, Sepanta

2016-11-01

It is essential for clinicians to have adequate knowledge about root canal configurations; although its morphology varies largely in different ethnicities and even in different individuals with the same ethnic background. The current study aims to review the root canal configurations of mesiobuccal roots of maxillary first molars in an Iranian population based on different epidemiological studies. A comprehensive search was conducted to retrieve articles related to root canal configuration and prevalence of each type of root canal based on Vertucci's classification for the mesiobuccal root of maxillary first molars. An electronic search was conducted in Medline, Scopus and Google Scholar from January 1984 to September 2015. The articles were evaluated and methods, population, number of teeth and percentage of each root canal type evaluated in each study were summarized in the data table. Websites such as http://www.magiran.com/ , http://health.barakatkns.com/journal-internal-list and www.sid.ir were used to search all related studies published in Persian. Totally, out of nine studies conducted on the Iranian populations in nine provinces of Iran and 798 teeth, the Vertucci's type I was the most common type (35.70%), followed by type II (30.37%), type IV (16.66%), type III (7.93%) and type V (2.61%). From this review article, it is concluded that the root canal morphology of mesiobuccal roots of maxillary first molars in the Iranian population predominantly has more than one canal. Therefore, careful evaluation of radiographs and anatomy of the pulp chamber is essential in order to achieve a successful root canal therapy.

Accumulative capabilities of essential nutrient elements in organs of ...

African Journals Online (AJOL)

Monsonia burkeana is widely used as herbal tea in South Africa. However, the accumulative capabilities (ACs) of its organs for essential nutrient elements are not documented. A study was conducted to determine the ACs for nutrient elements in fruit, leaf, stem and root of M. burkeana. Ten plants per plot, with three ...

Contributions of roots and rootstocks to sustainable, intensified crop production.

Science.gov (United States)

Gregory, Peter J; Atkinson, Christopher J; Bengough, A Glyn; Else, Mark A; Fernández-Fernández, Felicidad; Harrison, Richard J; Schmidt, Sonja

2013-03-01

Sustainable intensification is seen as the main route for meeting the world's increasing demands for food and fibre. As demands mount for greater efficiency in the use of resources to achieve this goal, so the focus on roots and rootstocks and their role in acquiring water and nutrients, and overcoming pests and pathogens, is increasing. The purpose of this review is to explore some of the ways in which understanding root systems and their interactions with soils could contribute to the development of more sustainable systems of intensive production. Physical interactions with soil particles limit root growth if soils are dense, but root-soil contact is essential for optimal growth and uptake of water and nutrients. X-ray microtomography demonstrated that maize roots elongated more rapidly with increasing root-soil contact, as long as mechanical impedance was not limiting root elongation, while lupin was less sensitive to changes in root-soil contact. In addition to selecting for root architecture and rhizosphere properties, the growth of many plants in cultivated systems is profoundly affected by selection of an appropriate rootstock. Several mechanisms for scion control by rootstocks have been suggested, but the causal signals are still uncertain and may differ between crop species. Linkage map locations for quantitative trait loci for disease resistance and other traits of interest in rootstock breeding are becoming available. Designing root systems and rootstocks for specific environments is becoming a feasible target.

Essential spectra and exponential estimates of eigenfunctions of lattice operators of quantum mechanics

International Nuclear Information System (INIS)

Rabinovich, Vladimir S; Roch, Steffen

2009-01-01

This paper is devoted to estimates of the exponential decay of eigenfunctions of difference operators on the lattice Z n which are discrete analogs of the Schroedinger, Dirac and square-root Klein-Gordon operators. Our investigation of the essential spectra and the exponential decay of eigenfunctions of the discrete spectra is based on the calculus of pseudodifference operators (i.e., pseudodifferential operators on the group Z n with analytic symbols), and the limit operators method. We obtain a description of the location of the essential spectra and estimates of the eigenfunctions of the discrete spectra of the main lattice operators of quantum mechanics, namely: matrix Schroedinger operators on Z n , Dirac operators on Z 3 and square root Klein-Gordon operators on Z n .

Chemical Composition and Nematicidal Activity of Essential Oil of Agastache rugosa against Meloidogyne incognita

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Zhi Wei Deng

2013-04-01

Full Text Available The aim of this research was to determine the chemical composition and nematicidal activity of essential oil of Agastache rugosa flowering aerial parts against the root knot nematode, Meloidogyne incognita, and to isolate and identify any nematicidal constituents from the essential oil. The essential oil of A. rugosa aerial parts was obtained by hydrodistillation and analyzed by GC-FID and GC-MS. A total of 37 components of the essential oil were identified, with the principal compounds being methyleugenol (50.51%, estragole (8.55%, and eugenol (7.54%, followed by thymol (3.62%, pulegone (2.56%, limonene (2.49% and caryophyllene (2.38%. Based on bioactivity-guided fractionation, the three active constituents were isolated from the essential oil and identified as methyleugenol, estragole and eugenol. The essential oil of A. rugosa exhibited strong nematicidal activity against M. incognita, with a LC50 value of 47.3 μg/mL. The components eugenol (LC50 = 66.6 μg/mL and methyleugenol (LC50 = 89.4 μg/mL exhibited stronger nematicidal activity against M. incognita (LC50 = 185.9 μg/mL. The results indicate that the essential oil of A. rugosa aerial parts and its constituent compounds have potential for development into natural nematicides for control of the root knot nematode.

[Essentialism and typological thinking in biological systematics].

Science.gov (United States)

Vasil'eva, L N

2003-01-01

In biological literature, essentialism and typological thinking are believed to be incompatible with evolutionary ideas. At present, the same considerations underlay the claims to abandon the Linnaean hierarchy, or the fundamental classificatory structure rooted in essentialism. This paper suggests to reconsider the negative views of Plato's typology and Aristotle's essentialism following the narrow interpretations that have nothing to do with the classification of living beings. Plato's theory of 'ideas' (or 'forms') is the basis of classificatory theory; it provided such concepts as 'species', 'genus', 'essence', 'dichotomous division' but the development of this theory in the framework of moral and esthetic values could not be beneficial to biology. Aristotle's essentialism is more complicated and exists in two forms; one of these, or classificatory essentialism, is a modification of Plato's typology; another one, or organismal essentialism, represents the shift of 'essence' from the world of relations between objects to the realm of particular things, where the concept of essence lost its basic meaning. It is senseless to look for unreal 'type of an organism' ('essence of a thing') but precisely this kind of essentialism is attractive for biologists and philosophers. Organismal essentialism is the underlying basis of so-called 'individuality thesis' that is used as a weapon against classificatory essentialism. The same thesis is associated with an extensional vision of taxa that also explains the criticism of Linnaean hierarchy, while the latter is the intentional structure and the first tool suggested for the rank coordination of many unequal taxa.

Cone Beam Computed Tomography Assisted Endodontic Management of a Rare Case of Mandibular First Premolar with Three Roots

OpenAIRE

Balakasireddy, K; Kumar, K Pavan; John, Gijo; Gagan, C

2015-01-01

Understanding the morphological anatomy of the root and root canal systems of the teeth increases the success rate of endodontic therapy. Advanced diagnostic imaging techniques like cone beam computed tomography (CBCT) are an essential aid in understanding the anatomy of teeth especially in mandibular premolars. Most commonly mandibular first and second premolars have a single root and a single canal. However, multiple root and canals have also been reported. The present case report discusses...

A Novel Plant Root Foraging Algorithm for Image Segmentation Problems

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Lianbo Ma

2014-01-01

Full Text Available This paper presents a new type of biologically-inspired global optimization methodology for image segmentation based on plant root foraging behavior, namely, artificial root foraging algorithm (ARFO. The essential motive of ARFO is to imitate the significant characteristics of plant root foraging behavior including branching, regrowing, and tropisms for constructing a heuristic algorithm for multidimensional and multimodal problems. A mathematical model is firstly designed to abstract various plant root foraging patterns. Then, the basic process of ARFO algorithm derived in the model is described in details. When tested against ten benchmark functions, ARFO shows the superiority to other state-of-the-art algorithms on several benchmark functions. Further, we employed the ARFO algorithm to deal with multilevel threshold image segmentation problem. Experimental results of the new algorithm on a variety of images demonstrated the suitability of the proposed method for solving such problem.

Linking root hydraulic properties to carbon allocation patterns in annual plant

Science.gov (United States)

Hosseini, A.; Ewers, B. E.; Adjesiwor, A. T.; Kniss, A. R.

2017-12-01

Incorporation of root structure and function into biophysical models is an important tool to predict plant water and nutrient uptake from the soil, plant carbon (C) assimilation, partitioning and release to the soils. Most of the models describing root water uptake (RWU) are based on semi-empirical (i.e. built on physiological hypotheses, but still combined with empirical functions) approaches and hydraulic parameters involved are hardly available. Root conductance is essential to define the interaction between soil-to-root and canopy-to-atmosphere. Also root hydraulic limitations to water flow can impact gas exchange rates and plant biomass partitioning. In this study, sugar beet (B. vulgaris) seeds under two treatments, grass (Kentucky bluegrass) and no grass (control), were planted in 19 L plastic buckets in June 2016. Photosynthetic characteristics (e.g. gas exchange and chlorophyll fluorescence), leaf morphology and anatomy, root morphology and above and below ground biomass of the plants was monitored at 15, 30, 50, 70 and 90 days after planting (DAP). Further emphasis was placed on the limits to water flow by coupling of hydraulic conductance (k) whole root-system with water relation parameters and gas exchange rates in fully established plants.

Essential Building Blocks of Human Nature

CERN Document Server

Frey, Ulrich J; Willführ, Kai P

2011-01-01

To understand why we humans are as we are, it is necessary to look at the essential building blocks that comprise our nature. The foundations of this structure are our evolutionary origins as primates and our social roots. Upon these rest features such as our emotions, language and aesthetic preferences, with our self-perceptions, self-deceptions and thirst for knowledge right at the top. The unifying force holding these blocks together is evolutionary theory. Evolution provides a deeper understanding of human nature and, in particular, of the common roots of these different perspectives. To build a reliable and coherent model of man, leading authors from fields as diverse as primatology, anthropology, neurobiology and philosophy have joined forces to present essays  each describing their own expert perspective. Together they provide a convincing and complete picture of our own human nature.

Comparison between Arabidopsis and Rice for Main Pathways of K+ and Na+ Uptake by Roots

OpenAIRE

Nieves-Cordones, Manuel; Mart?nez, Vicente; Benito, Bego?a; Rubio, Francisco

2016-01-01

K+ is an essential macronutrient for plants. It is acquired by specific uptake systems located in roots. Although the concentrations of K+ in the soil solution are widely variable, K+ nutrition is secured by uptake systems that exhibit different affinities for K+. Two main systems have been described for root K+ uptake in several species: the high-affinity HAK5-like transporter and the inward-rectifier AKT1-like channel. Other unidentified systems may be also involved in root K+ uptake, a...

Genetic association among root morphology, root quality and root yield in ashwagandha (Withania somnifera)

OpenAIRE

Kumar Ramesh R.; Reddy Anjaneya Prasanna L.; Subbaiah Chinna J.; Kumar Niranjana A.; Prasad Nagendra H.N.; Bhukya Balakishan

2011-01-01

Ashwagandha (Withania somnifera) is a dryland medicinal crop and roots are used as valuable drug in traditional systems of medicine. Morphological variants (morphotypes) and the parental populations were evaluated for root - morphometric, quality and yield traits to study genetic association among them. Root morphometric traits (root length, root diameter, number of secondary roots/ plant) and crude fiber content exhibited strong association among them and ...

Eleutherococcus senticosus (Araliaceae) leaf morpho-anatomy, essential oil composition and its biological activity against Aedes aegypti (Diptera: Culicidae)

Science.gov (United States)

The roots of Eleutherococcus senticosus, a well-known medicinal plant from Eastern Asia, are used worldwide for their known beneficial medicinal properties. Recently the leaves have been used as an alternative to the roots. The present study was aimed at exploring the leaf essential oil as a potenti...

Root rots

Science.gov (United States)

Kathryn Robbins; Philip M. Wargo

1989-01-01

Root rots of central hardwoods are diseases caused by fungi that infect and decay woody roots and sometimes also invade the butt portion of the tree. By killing and decaying roots, root rotting fungi reduce growth, decrease tree vigor, and cause windthrow and death. The most common root diseases of central hardwoods are Armillaria root rot, lnonotus root rot, and...

Responses of root architecture development to low phosphorus availability: a review.

Science.gov (United States)

Niu, Yao Fang; Chai, Ru Shan; Jin, Gu Lei; Wang, Huan; Tang, Cai Xian; Zhang, Yong Song

2013-07-01

Phosphorus (P) is an essential element for plant growth and development but it is often a limiting nutrient in soils. Hence, P acquisition from soil by plant roots is a subject of considerable interest in agriculture, ecology and plant root biology. Root architecture, with its shape and structured development, can be considered as an evolutionary response to scarcity of resources. This review discusses the significance of root architecture development in response to low P availability and its beneficial effects on alleviation of P stress. It also focuses on recent progress in unravelling cellular, physiological and molecular mechanisms in root developmental adaptation to P starvation. The progress in a more detailed understanding of these mechanisms might be used for developing strategies that build upon the observed explorative behaviour of plant roots. The role of root architecture in alleviation of P stress is well documented. However, this paper describes how plants adjust their root architecture to low-P conditions through inhibition of primary root growth, promotion of lateral root growth, enhancement of root hair development and cluster root formation, which all promote P acquisition by plants. The mechanisms for activating alterations in root architecture in response to P deprivation depend on changes in the localized P concentration, and transport of or sensitivity to growth regulators such as sugars, auxins, ethylene, cytokinins, nitric oxide (NO), reactive oxygen species (ROS) and abscisic acid (ABA). In the process, many genes are activated, which in turn trigger changes in molecular, physiological and cellular processes. As a result, root architecture is modified, allowing plants to adapt effectively to the low-P environment. This review provides a framework for understanding how P deficiency alters root architecture, with a focus on integrated physiological and molecular signalling.

Responses of root architecture development to low phosphorus availability: a review

Science.gov (United States)

Niu, Yao Fang; Chai, Ru Shan; Jin, Gu Lei; Wang, Huan; Tang, Cai Xian; Zhang, Yong Song

2013-01-01

Background Phosphorus (P) is an essential element for plant growth and development but it is often a limiting nutrient in soils. Hence, P acquisition from soil by plant roots is a subject of considerable interest in agriculture, ecology and plant root biology. Root architecture, with its shape and structured development, can be considered as an evolutionary response to scarcity of resources. Scope This review discusses the significance of root architecture development in response to low P availability and its beneficial effects on alleviation of P stress. It also focuses on recent progress in unravelling cellular, physiological and molecular mechanisms in root developmental adaptation to P starvation. The progress in a more detailed understanding of these mechanisms might be used for developing strategies that build upon the observed explorative behaviour of plant roots. Conclusions The role of root architecture in alleviation of P stress is well documented. However, this paper describes how plants adjust their root architecture to low-P conditions through inhibition of primary root growth, promotion of lateral root growth, enhancement of root hair development and cluster root formation, which all promote P acquisition by plants. The mechanisms for activating alterations in root architecture in response to P deprivation depend on changes in the localized P concentration, and transport of or sensitivity to growth regulators such as sugars, auxins, ethylene, cytokinins, nitric oxide (NO), reactive oxygen species (ROS) and abscisic acid (ABA). In the process, many genes are activated, which in turn trigger changes in molecular, physiological and cellular processes. As a result, root architecture is modified, allowing plants to adapt effectively to the low-P environment. This review provides a framework for understanding how P deficiency alters root architecture, with a focus on integrated physiological and molecular signalling. PMID:23267006

Maxillary molars with morphologic variations of the palatal root canals: a report of four cases.

Science.gov (United States)

Holderrieth, Silke; Gernhardt, Christian Ralf

2009-07-01

The purpose of this article was to show the importance of the knowledge of the anatomy of root canals. Unusual root and root canal morphologies associated with both buccal roots of upper molars have been recorded in several studies in the literature. However, scientific information focusing on variations of the palatal root is rare. In this report, four cases are presented involving the root canal treatment of maxillary first and second molars with unusual morphologic configurations of the palatal root canals. During root canal treatment, type IV and V configurations as defined by Vertucci of the palatal canals of two first and two second maxillary molars were identified. After mechanical instrumentation, the canals were obturated. Radiologic and clinical re-evaluation showed no signs of inflammation. This report describes and discusses the possibility of different root and canal variations of the maxillary molars from a clinical point of view. Anatomic variations can occur in any tooth, and palatal roots of maxillary first and second molars are no exception. Therefore, careful examination of radiographs and internal anatomy of teeth is essential.

Root induced changes of effective 1D hydraulic properties in a soil column.

Science.gov (United States)

Scholl, P; Leitner, D; Kammerer, G; Loiskandl, W; Kaul, H-P; Bodner, G

Roots are essential drivers of soil structure and pore formation. This study aimed at quantifying root induced changes of the pore size distribution (PSD). The focus was on the extent of clogging vs. formation of pores during active root growth. Parameters of Kosugi's lognormal PSD model were determined by inverse estimation in a column experiment with two cover crops (mustard, rye) and an unplanted control. Pore dynamics were described using a convection-dispersion like pore evolution model. Rooted treatments showed a wider range of pore radii with increasing volumes of large macropores >500 μm and micropores <2.5 μm, while fine macropores, mesopores and larger micropores decreased. The non-rooted control showed narrowing of the PSD and reduced porosity over all radius classes. The pore evolution model accurately described root induced changes, while structure degradation in the non-rooted control was not captured properly. Our study demonstrated significant short term root effects with heterogenization of the pore system as dominant process of root induced structure formation. Pore clogging is suggested as a partial cause for reduced pore volume. The important change in micro- and large macropores however indicates that multiple mechanic and biochemical processes are involved in root-pore interactions.

Low Latency Digit-Recurrence Reciprocal and Square-Root Reciprocal Algorithm and Architecture

DEFF Research Database (Denmark)

Antelo, Elisardo; Lang, Tomas; Montuschi, Paolo

2005-01-01

The reciprocal and square-root reciprocal operations are important in several applications. For these operations, we present algorithms that combine a digit-by-digit module and one iteration of a quadratic-convergence approximation. The latter is implemented by a digit-recurrence, which uses......-up of about 2 and, because of the approximation part, the area factor is also about 2. We also show a combined implementation for both operations that has essentially the same complexity as that for square-root reciprocal alone....

A review of the influence of root-associating fungi and root exudates on the success of invasive plants

Directory of Open Access Journals (Sweden)

Cindy Bongard

2012-08-01

Full Text Available Plant-fungal interactions are essential for understanding the distribution and abundance of plants species. Recently, arbuscular mycorrhizal fungal (AMF partners of non-indigenous invasive plants have been hypothesized to be a critical factor influencing the invasion processes. AMF are known to improve nutrient and moisture uptake, as well as disrupt parasitic and pathogenic microbes in the host plant. Such benefits may enable invaders to establish significant and persistent populations in environments previously dominated by natives. Coupling these findings with studies on invader pathogen-disrupting root exudates is not well documented in the literature describing plant invasion strategies. The interaction effects of altered AMF associations and the impact of invader root exudates would be more relevant than understanding the AMF dynamics or the phytochemistry of successful invaders in isolation, particularly given that AMF and root exudates can have a similar role in pathogen control but function quite differently. One means to achieve this goal is to assess these strategies concurrently by characterizing both the general (mostly pathogens or commensals and AM-specific fungal colonization patterns found in field collected root samples of successful invaders, native plants growing within dense patches of invaders, and native plants growing separately from invaders. In this review I examine the emerging evidence of the ways in which AMF-plant interactions and the production of defensive root exudates provide pathways to invasive plant establishment and expansion, and conclude that interaction studies must be pursued to achieve a more comprehensive understanding of successful plant invasion.

Dynamics of organic matters in the root-rhizoplane-soil system of maize [Zea mays], 1: A simple and rapid method for measuring root respiration

Energy Technology Data Exchange (ETDEWEB)

Okada, K. [Tokyo Univ., Tokyo (Japan); Kumura, A.

1990-03-15

In the analysis of dynamics of organic matter in the root-rhizoplane-soil system, it is essential to estimate various kinds of carbon flows in the system separately. Since a simple and rapid method for measuring root respiration was needed for this purpose, the authors developed the following method. A plastic syringe is used as the chamber. Sample roots are put into a syringe, in which the air is replaced with air of known CO{sub 2} concentration and the syringe is kept at a constant temperature for a certain time. A volume of the air in the syringe is injected into the flow of N{sub 2} gas in the tube which is connected to an infrared gas analyzer. The CO{sub 2} concentration in the syringe is directly related to the reading of the analyzer. From the difference of the CO{sub 2} concentration in the syringe before and after the incubation, the respiration rate of the roots is calculated. The details of the procedure were determined by the results of experiments regarding the effects of factors concerned. (author)

Root growth, secondary root formation and root gravitropism in carotenoid-deficient seedlings of Zea mays L

Science.gov (United States)

Ng, Y. K.; Moore, R.

1985-01-01

The effect of ABA on root growth, secondary-root formation and root gravitropism in seedlings of Zea mays was investigated by using Fluridone-treated seedlings and a viviparous mutant, both of which lack carotenoids and ABA. Primary roots of seedlings grown in the presence of Fluridone grew significantly slower than those of control (i.e. untreated) roots. Elongation of Fluridone-treated roots was inhibited significantly by the exogenous application of 1 mM ABA. Exogenous application of 1 micromole and 1 nmole ABA had either no effect or only a slight stimulatory effect on root elongation, depending on the method of application. The absence of ABA in Fluridone-treated plants was not an important factor in secondary-root formation in seedlings less than 9-10 d old. However, ABA may suppress secondary-root formation in older seedlings, since 11-d-old control seedlings had significantly fewer secondary roots than Fluridone-treated seedlings. Roots of Fluridone-treated and control seedlings were graviresponsive. Similar data were obtained for vp-9 mutants of Z. mays, which are phenotypically identical to Fluridone-treated seedlings. These results indicate that ABA is necessary for neither secondary-root formation nor for positive gravitropism by primary roots.

Phytotoxicity and Cytotoxicity of Essential Oil from Leaves of Plectranthus amboinicus, Carvacrol, and Thymol in Plant Bioassays.

Science.gov (United States)

Pinheiro, Patrícia Fontes; Costa, Adilson Vidal; Alves, Thammyres de Assis; Galter, Iasmini Nicoli; Pinheiro, Carlos Alexandre; Pereira, Alexandre Fontes; Oliveira, Carlos Magno Ramos; Fontes, Milene Miranda Praça

2015-10-21

The essential oil of Plectranthus amboinicus and its chemotypes, carvacrol and thymol, were evaluated on the germination and root and aerial growth of Lactuca sativa and Sorghum bicolor and in acting on the cell cycle of meristematic root cells of L. sativa. The main component found in the oil by analysis in gas chromatography-mass spectrometry and gas chromatography flame ionization detection was carvacrol (88.61% in area). At a concentration of 0.120% (w v(-1)), the oil and its chemotypes retarded or inhibited the germination and decreased root and aerial growth in monocot and dicot species used in the bioassays. In addition, all substances caused changes in the cell cycle of the meristematic cells of L. sativa, with chromosomal alterations occurring from the 0.015% (w v(-1)) concentration. The essential oil of P. amboinicus, carvacrol, and thymol have potential for use as bioherbicides.

Chemical composition and antioxidant activities of essential oils from different parts of the oregano.

Science.gov (United States)

Han, Fei; Ma, Guang-Qiang; Yang, Ming; Yan, Li; Xiong, Wei; Shu, Ji-Cheng; Zhao, Zhi-Dong; Xu, Han-Lin

This research was undertaken in order to characterize the chemical compositions and evaluate the antioxidant activities of essential oils obtained from different parts of the Origanum vulgare L. It is a medicinal plant used in traditional Chinese medicine for the treatment of heat stroke, fever, vomiting, acute gastroenteritis, and respiratory disorders. The chemical compositions of the three essential oils from different parts of the oregano (leaves-flowers, stems, and roots) were identified by gas chromatography-mass spectrometry (GC-MS). The antioxidant activity of each essential oil was assessed using the 2,2-diphenyl-1-picrylhydrazyl (DPPH) free radical scavenging assay and reducing the power test. Among the essential oils from different parts of the oregano, the leaf-flower oils have the best antioxidant activities, whereas the stem oils are the worst. The results of the DPPH free radical scavenging assay showed that the half maximal inhibitory concentration (IC 50 ) values of the essential oils were (0.332±0.040) mg/ml (leaves-flowers), (0.357±0.031) mg/ml (roots), and (0.501±0.029) mg/ml (stems), respectively. Interestingly, the results of reducing the power test also revealed that when the concentration exceeded 1.25 mg/ml, the leaf-flower oils had the highest reducing power; however, the stem oils were the lowest.

TGeoCad: an Interface between ROOT and CAD Systems

International Nuclear Information System (INIS)

Luzzi, C; Carminati, F

2014-01-01

In the simulation of High Energy Physics experiment a very high precision in the description of the detector geometry is essential to achieve the required performances. The physicists in charge of Monte Carlo Simulation of the detector need to collaborate efficiently with the engineers working at the mechanical design of the detector. Often, this collaboration is made hard by the usage of different and incompatible software. ROOT is an object-oriented C++ framework used by physicists for storing, analyzing and simulating data produced by the high-energy physics experiments while CAD (Computer-Aided Design) software is used for mechanical design in the engineering field. The necessity to improve the level of communication between physicists and engineers led to the implementation of an interface between the ROOT geometrical modeler used by the virtual Monte Carlo simulation software and the CAD systems. In this paper we describe the design and implementation of the TGeoCad Interface that has been developed to enable the use of ROOT geometrical models in several CAD systems. To achieve this goal, the ROOT geometry description is converted into STEP file format (ISO 10303), which can be imported and used by many CAD systems

TGeoCad: an Interface between ROOT and CAD Systems

Science.gov (United States)

Luzzi, C.; Carminati, F.

2014-06-01

In the simulation of High Energy Physics experiment a very high precision in the description of the detector geometry is essential to achieve the required performances. The physicists in charge of Monte Carlo Simulation of the detector need to collaborate efficiently with the engineers working at the mechanical design of the detector. Often, this collaboration is made hard by the usage of different and incompatible software. ROOT is an object-oriented C++ framework used by physicists for storing, analyzing and simulating data produced by the high-energy physics experiments while CAD (Computer-Aided Design) software is used for mechanical design in the engineering field. The necessity to improve the level of communication between physicists and engineers led to the implementation of an interface between the ROOT geometrical modeler used by the virtual Monte Carlo simulation software and the CAD systems. In this paper we describe the design and implementation of the TGeoCad Interface that has been developed to enable the use of ROOT geometrical models in several CAD systems. To achieve this goal, the ROOT geometry description is converted into STEP file format (ISO 10303), which can be imported and used by many CAD systems.

A ROOT based event display software for JUNO

Science.gov (United States)

You, Z.; Li, K.; Zhang, Y.; Zhu, J.; Lin, T.; Li, W.

2018-02-01

An event display software SERENA has been designed for the Jiangmen Underground Neutrino Observatory (JUNO). The software has been developed in the JUNO offline software system and is based on the ROOT display package EVE. It provides an essential tool to display detector and event data for better understanding of the processes in the detectors. The software has been widely used in JUNO detector optimization, simulation, reconstruction and physics study.

Rooting phylogenetic trees under the coalescent model using site pattern probabilities.

Science.gov (United States)

Tian, Yuan; Kubatko, Laura

2017-12-19

Phylogenetic tree inference is a fundamental tool to estimate ancestor-descendant relationships among different species. In phylogenetic studies, identification of the root - the most recent common ancestor of all sampled organisms - is essential for complete understanding of the evolutionary relationships. Rooted trees benefit most downstream application of phylogenies such as species classification or study of adaptation. Often, trees can be rooted by using outgroups, which are species that are known to be more distantly related to the sampled organisms than any other species in the phylogeny. However, outgroups are not always available in evolutionary research. In this study, we develop a new method for rooting species tree under the coalescent model, by developing a series of hypothesis tests for rooting quartet phylogenies using site pattern probabilities. The power of this method is examined by simulation studies and by application to an empirical North American rattlesnake data set. The method shows high accuracy across the simulation conditions considered, and performs well for the rattlesnake data. Thus, it provides a computationally efficient way to accurately root species-level phylogenies that incorporates the coalescent process. The method is robust to variation in substitution model, but is sensitive to the assumption of a molecular clock. Our study establishes a computationally practical method for rooting species trees that is more efficient than traditional methods. The method will benefit numerous evolutionary studies that require rooting a phylogenetic tree without having to specify outgroups.

Investigation on phytochemical, antimicrobial activity and essential oil constituents of Nardostachys jatamansi DC. in different regions of Nepa

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Narayan Sharma

2016-01-01

Full Text Available Objective: To study chemical constituents of essential oil of the roots of Nardostachys jatamansi found in different regions of Nepal and also to investigate phytochemical as well as antimicrobial activity of the sample with high yield of essential oil. Methods: The essential oils of roots of plant from five different regions were extracted by hydro-distillation and analyzed by gas chromatography-mass spectroscopy for their chemical constituents. The root samples were also subjected to hydro-alcoholic extraction and then fractionated with hexane, chloroform, n-butanol and water so as to perform phytochemical screening and antimicrobial activity. Results: The essential oil yield of sample from Jumla was found to be the highest followed by a sample from Nepalgunj, Surkhet and Kathmandu whereas that of sample from Dharan was found to be the lowest. Gas chromatography-mass spectrometer analysis of essential oil of five samples showed that “2-beta pinene” appeared dominated in three samples, namely, 6VJ Nepalgunj, 9VJA Jumla and 10VJ Surkhet. Similarly “alkohol aus neoclovenoxid” in 8VJ Dharan and “methoxy phenyloxime” in 13VJA Kathmandu was found to be present in the highest amount. Phytochemical screening of different fractions of sample 9VJA Jumla showed the presence of alkaloids, terpenoids, glycosides, proteins and amino acids, and carbohydrates etc. Antimicrobial susceptibility test of same fractions showed the n-butanol fraction potent against all pathogens and most affected one was Escherichia coli. Conclusions: Our study suggests that the essential oil of Nardostachys jatamansi found in Nepal contains more than 80 compounds with their quality and quantity differing from place to place.

Rooting strategies in a subtropical savanna: a landscape-scale three-dimensional assessment.

Science.gov (United States)

Zhou, Yong; Boutton, Thomas W; Wu, X Ben; Wright, Cynthia L; Dion, Anais L

2018-04-01

In resource-limited savannas, the distribution and abundance of fine roots play an important role in acquiring essential resources and structuring vegetation patterns and dynamics. However, little is known regarding the three-dimensional distribution of fine roots in savanna ecosystems at the landscape scale. We quantified spatial patterns of fine root density to a depth of 1.2 m in a subtropical savanna landscape using spatially specific sampling. Kriged maps revealed that fine root density was highest at the centers of woody patches, decreased towards the canopy edges, and reached lowest values within the grassland matrix throughout the entire soil profile. Lacunarity analyses indicated that spatial heterogeneities of fine root density decreased continuously to a depth of 50 cm and then increased in deeper portions of the soil profile across this landscape. This vertical pattern might be related to inherent differences in root distribution between trees/shrubs and herbaceous species, and the presence/absence of an argillic horizon across this landscape. The greater density of fine roots beneath woody patches in both upper and lower portions of the soil profile suggests an ability to acquire disproportionately more resources than herbaceous species, which may facilitate the development and persistence of woody patches across this landscape.

Molecular and phytochemical investigation of Angelica dahurica and Angelica pubescentis essential oils and their biological activity against Aedes aegypti, Stephanitis pyrioides, and Colletotrichum species.

Science.gov (United States)

Tabanca, Nurhayat; Gao, Zengping; Demirci, Betul; Techen, Natascha; Wedge, David E; Ali, Abbas; Sampson, Blair J; Werle, Chris; Bernier, Ulrich R; Khan, Ikhlas A; Baser, Kemal Husnu Can

2014-09-03

In this study, Angelica dahurica and Angelica pubescentis root essential oils were investigated as pest management perspectives, and root samples were also analyzed genetically using the nuclear ribosomal internal transcribed spacer (ITS) region as a DNA barcode marker. A. pubescentis root essential oil demonstrated weak antifungal activity against Colletotrichum acutatum, Colletotrichum fragariae, and Colletotrichum gloeosporioides, whereas A. dahurica root essential oil did not show antifungal activity. Conversely, A. dahurica root essential oil demonstrated better biting deterrent and insecticidal activity against yellow fever mosquito, Aedes aegypti, and azalea lace bugs, Stephanitis pyrioides, than A. pubescentis root oil. The major compounds in the A. dahurica oil were found as α-pinene (46.3%), sabinene (9.3%), myrcene (5.5%), 1-dodecanol (5.2%), and terpinen-4-ol (4.9%). α-Pinene (37.6%), p-cymene (11.6%), limonene (8.7%), and cryptone (6.7%) were the major compounds found in the A. pubescentis oil. In mosquito bioassays, 1-dodecanol and 1-tridecanol showed antibiting deterrent activity similar to the positive control DEET (N,N-diethyl-3-methylbenzamide) at 25 nmol/cm(2) against Ae. aegypti, whereas only 1-tridecanol showed repellent activity in human-based cloth patch bioassay with minimum effective dosages (MED) of 0.086 ± 0.089 mg/cm(2) (DEET = 0.007 ± 0.003 mg/cm(2)). In larval bioassays, 1-tridecanol was more toxic with an LC50 value of 2.1 ppm than 1-dodecanol having an LC50 value of 5.2 ppm against 1-day-old Ae. aegypti larvae. 1-Dodecanol and 1-tridecanol could be useful for the natural mosquito control agents.

Variation in the chemical composition of the essential oils of different ...

African Journals Online (AJOL)

The essential oils from the different organs of wild and domesticated Lippia multiflora Moldenke, analysed by GPC-FID and GPC-MS, were rich in monoterpenes. These made up 95.0, 94.0, 82.5 and 61.0% of oils from leaves, flowers, stems and roots, respectively, with a predominance of aromatic monoterpenes: p-cymene, ...

Root development during soil genesis: effects of root-root interactions, mycorrhizae, and substrate

Science.gov (United States)

Salinas, A.; Zaharescu, D. G.

2015-12-01

A major driver of soil formation is the colonization and transformation of rock by plants and associated microbiota. In turn, substrate chemical composition can also influence the capacity for plant colonization and development. In order to better define these relationships, a mesocosm study was set up to analyze the effect mycorrhizal fungi, plant density and rock have on root development, and to determine the effect of root morphology on weathering and soil formation. We hypothesized that plant-plant and plant-fungi interactions have a stronger influence on root architecture and rock weathering than the substrate composition alone. Buffalo grass (Bouteloua dactyloides) was grown in a controlled environment in columns filled with either granular granite, schist, rhyolite or basalt. Each substrate was given two different treatments, including grass-microbes and grass-microbes-mycorrhizae and incubated for 120, 240, and 480 days. Columns were then extracted and analyzed for root morphology, fine fraction, and pore water major element content. Preliminary results showed that plants produced more biomass in rhyolite, followed by schist, basalt, and granite, indicating that substrate composition is an important driver of root development. In support of our hypothesis, mycorrhizae was a strong driver of root development by stimulating length growth, biomass production, and branching. However, average root length and branching also appeared to decrease in response to high plant density, though this trend was only present among roots with mycorrhizal fungi. Interestingly, fine fraction production was negatively correlated with average root thickness and volume. There is also slight evidence indicating that fine fraction production is more related to substrate composition than root morphology, though this data needs to be further analyzed. Our hope is that the results of this study can one day be applied to agricultural research in order to promote the production of crops

Disentangling the intertwined genetic bases of root and shoot growth in Arabidopsis.

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Marie Bouteillé

Full Text Available Root growth and architecture are major components of plant nutrient and water use efficiencies and these traits are the matter of extensive genetic analysis in several crop species. Because root growth relies on exported assimilate from the shoot, and changes in assimilate supply are known to alter root architecture, we hypothesized (i that the genetic bases of root growth could be intertwined with the genetic bases of shoot growth and (ii that the link could be either positive, with alleles favouring shoot growth also favouring root growth, or negative, because of competition for assimilates. We tested these hypotheses using a quantitative genetics approach in the model species Arabidopsis thaliana and the Bay-0 × Shahdara recombinant inbred lines population. In accordance with our hypothesis, root and shoot growth traits were strongly correlated and most root growth quantitative trait loci (QTLs colocalized with shoot growth QTLs with positive alleles originating from either the same or the opposite parent. In order to identify regions that could be responsible for root growth independently of the shoot, we generated new variables either based on root to shoot ratios, residuals of root to shoot correlations or coordinates of principal component analysis. These variables showed high heritability allowing genetic analysis. They essentially all yielded similar results pointing towards two regions involved in the root--shoot balance. Using Heterogeneous Inbred Families (a kind of near-isogenic lines, we validated part of the QTLs present in these two regions for different traits. Our study thus highlights the difficulty of disentangling intertwined genetic bases of root and shoot growth and shows that this difficulty can be overcome by using simple statistical tools.

Composition of the root oil of Alpinia chinensis Rose. from Vietnam

NARCIS (Netherlands)

Leclercq, P.A.; Dung, N.X.; Chinh, T.D.; Rang, D.D.

1994-01-01

The essential oil of the roots of Alpinia chinensis Rosc. of Vietnamese origin has been analyzed by a combination of high resoln. GC and GC/MS. Nineteen components, representing about 70% of the oil, have been identified. Most of them are sesquiterpenes such as b-caryophyllene (5.2%), a-humulene

Python bindings for C++ using PyROOT/cppyy: the experience from PyCool in COOL

CERN Multimedia

CERN. Geneva

2016-01-01

The COOL software is used by the ATLAS and LHCb experiments to handle the time variation and versioning of their conditions data, using a variety of different relational database technologies. While the COOL core libraries are written in C++ and are integrated in the experiment C++ frameworks, a package offering Python bindings of the COOL C++ APIs, PyCool, is also provided and has been an essential component of the ATLAS conditions data management toolkit for over 10 years. Almost since the beginning, the implementation of PyCool has been based on ROOT to generate Python bindings for C++, initially using Reflex and PyROOT in ROOT5 and more recently using clang and cppyy in ROOT6. This presentation will describe the PyCool experience with using ROOT to generate Python bindings for C++, throughout the many evolutions of the underlying technology.

Rooting gene trees without outgroups: EP rooting.

Science.gov (United States)

Sinsheimer, Janet S; Little, Roderick J A; Lake, James A

2012-01-01

Gene sequences are routinely used to determine the topologies of unrooted phylogenetic trees, but many of the most important questions in evolution require knowing both the topologies and the roots of trees. However, general algorithms for calculating rooted trees from gene and genomic sequences in the absence of gene paralogs are few. Using the principles of evolutionary parsimony (EP) (Lake JA. 1987a. A rate-independent technique for analysis of nucleic acid sequences: evolutionary parsimony. Mol Biol Evol. 4:167-181) and its extensions (Cavender, J. 1989. Mechanized derivation of linear invariants. Mol Biol Evol. 6:301-316; Nguyen T, Speed TP. 1992. A derivation of all linear invariants for a nonbalanced transversion model. J Mol Evol. 35:60-76), we explicitly enumerate all linear invariants that solely contain rooting information and derive algorithms for rooting gene trees directly from gene and genomic sequences. These new EP linear rooting invariants allow one to determine rooted trees, even in the complete absence of outgroups and gene paralogs. EP rooting invariants are explicitly derived for three taxon trees, and rules for their extension to four or more taxa are provided. The method is demonstrated using 18S ribosomal DNA to illustrate how the new animal phylogeny (Aguinaldo AMA et al. 1997. Evidence for a clade of nematodes, arthropods, and other moulting animals. Nature 387:489-493; Lake JA. 1990. Origin of the metazoa. Proc Natl Acad Sci USA 87:763-766) may be rooted directly from sequences, even when they are short and paralogs are unavailable. These results are consistent with the current root (Philippe H et al. 2011. Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470:255-260).

RootJS: Node.js Bindings for ROOT 6

Science.gov (United States)

Beffart, Theo; Früh, Maximilian; Haas, Christoph; Rajgopal, Sachin; Schwabe, Jonas; Wolff, Christoph; Szuba, Marek

2017-10-01

We present rootJS, an interface making it possible to seamlessly integrate ROOT 6 into applications written for Node.js, the JavaScript runtime platform increasingly commonly used to create high-performance Web applications. ROOT features can be called both directly from Node.js code and by JIT-compiling C++ macros. All rootJS methods are invoked asynchronously and support callback functions, allowing non-blocking operation of Node.js applications using them. Last but not least, our bindings have been designed to platform-independent and should therefore work on all systems supporting both ROOT 6 and Node.js. Thanks to rootJS it is now possible to create ROOT-aware Web applications taking full advantage of the high performance and extensive capabilities of Node.js. Examples include platforms for the quality assurance of acquired, reconstructed or simulated data, book-keeping and e-log systems, and even Web browser-based data visualisation and analysis.

Evaluation of bacterial leakage of four root- end filling materials: Gray Pro Root MTA, White Pro Root MTA, Root MTA and Portland Cement (type I

Directory of Open Access Journals (Sweden)

Zarabian M.

2005-07-01

Full Text Available Background and Aim: Today several materials have been used for root- end filling in endodontic surgery. Optimal properties of Pro Root MTA in in-vitro and in-vivo studies has been proven. On the other hand, based on some studies, Root MTA (Iranian Pro Root MTA and Portland cement are similar to Pro Root MTA in physical and biologic properties. The aim of this study was to evaluate bacterial leakage (amount and mean leakage time of four root- end filling materials. Materials and Methods: In this experimental in-vitro study, seventy six extracted single- rooted human teeth were randomly divided into six groups for root-end filling with gray Pro Root MTA, white Pro Root MTA, Root MTA (Iranian Pro Root MTA, Portland Cement (type I and positive and negative control groups. Root canals were instrumented using the step- back technique. Root- end filling materials were placed in 3mm ultra sonic retro preparations. Samples and microleakage model system were sterilized in autoclave. The apical 3-4 mm of the roots were immersed in phenol red with 3% lactose broth culture medium. The coronal access of each specimen was inoculated every 24h with a suspension of Streptococcus sanguis (ATCC 10556. Culture media were observed every 24h for colour change indicating bacterial contamination for 60 days. Statistical analysis was performed using log- rank test with P<0.05 as the limit of significance. Results: At the end of study 50%, 56.25%, 56.25% and 50% of specimens filled with Gray Pro Root MTA, White Pro Root MTA. Root MTA and Portland Cement (type I had evidence of leakage respectively. The mean leakage time was 37.19±6.29, 36.44±5.81, 37.69±5.97 and 34.81±6.67 days respectively. Statistical analysis of data showed no significant difference among the leakage (amount and mean leakage time of the four tested root- end filling materials (P=0.9958. Conclusion: Based on the results of this study, there were no significant differences in leakage among the four

Chemical constituents of Capraria biflora (Scrophulariaceae) and larvicidal activity of essential oil

International Nuclear Information System (INIS)

Souza, Luciana Gregorio da S.; Almeida, Macia Cleane S.; Monte, Francisco Jose Q.; Santiago, Gilvandete Maria P.; Braz-Filho, Raimundo; Lemos, Telma Leda G.; Gomes, Clerton L.; Nascimento, Ronaldo F. do

2012-01-01

. Analysis of essential oil from fresh leaves of Capraria biflora allowed identification of fourteen essential oil constituents among which thirteen are sesquiterpene compounds, and α-humulene (43.0%) the major constituent. The essential oil was tested for larvicidal activity against Aedes aegypyti showing good activity, with LC 50 73.39 μg/mL (2.27 g/mL). Chromatographic studies of extracts from roots and stems allowed the isolation of five compounds: naphthoquinone biflorin, sesquiterpene caprariolide B, the steroid β-sitosterol, the carbohydrate D-mannitol and iridoid myopochlorin first reported in the species C. biflora. The structures of compounds were characterized by spectroscopic data, IR, MS, NMR 13 C, NMR 1 H, NOE, HSQC and HMBC. (author)

Root proliferation in decaying roots and old root channels: A nutrient conservation mechanism in oligotrophic mangrove forests?

Science.gov (United States)

McKee, K.L.

2001-01-01

1. In oligotrophic habitats, proliferation of roots in nutrient-rich microsites may contribute to overall nutrient conservation by plants. Peat-based soils on mangrove islands in Belize are characterized by the presence of decaying roots and numerous old root channels (0.1-3.5 cm diameter) that become filled with living and highly branched roots of Rhizophora mangle and Avicennia germinans. The objectives of this study were to quantify the proliferation of roots in these microsites and to determine what causes this response. 2. Channels formed by the refractory remains of mangrove roots accounted for only 1-2% of total soil volume, but the proportion of roots found within channels varied from 9 to 24% of total live mass. Successive generations of roots growing inside increasingly smaller root channels were also found. 3. When artificial channels constructed of PVC pipe were buried in the peat for 2 years, those filled with nutrient-rich organic matter had six times more roots than empty or sand-filled channels, indicating a response to greater nutrient availability rather than to greater space or less impedance to root growth. 4. Root proliferation inside decaying roots may improve recovery of nutrients released from decomposing tissues before they can be leached or immobilized in this intertidal environment. Greatest root proliferation in channels occurred in interior forest zones characterized by greater soil waterlogging, which suggests that this may be a strategy for nutrient capture that minimizes oxygen losses from the whole root system. 5. Improved efficiency of nutrient acquisition at the individual plant level has implications for nutrient economy at the ecosystem level and may explain, in part, how mangroves persist and grow in nutrient-poor environments.

Essential Oil Composition of the Different Parts and In Vitro Shoot Culture of Eryngium planum L.

Directory of Open Access Journals (Sweden)

Anna Kurowska

2011-08-01

Full Text Available The essential oils obtained by hydrodistillation from the different parts (inflorescence, stalk leaves, rosette leaves and root as well as from in vitro shoot culture of Eryngium planum L. were analyzed by GC-FID-MS in respect to their chemical composition. The different parts of E. planum and in vitro shoots showed different yields. The part with higher amount was the inflorescences, followed by the stalk leaves and in vitro shoots, rosette leaves and finally roots. The essential oils obtained from rosette leaves and in vitro-derived rosettes had totally different composition. Quantitative differences were also found between compounds of intact plant organs. The main components of stalk leaf oil and rosette leaf oil were monoterpene (limonene, α- and β-pinene and sesquiterpene hydrocarbons. In inflorescence oil cis-chrysanthenyl acetate (43.2% was accompanied by other esters (propionate, butanoate, hexanoate and octanoate and numerous oxygenated sesquiterpenes. Root oil and in vitro shoot oil contained mainly (Z-falcarinol and 2,3,4-trimethylbenzaldehyde. This is the first report on the chemical composition of this species.

Independent signalling cues underpin arbuscular mycorrhizal symbiosis and large lateral root induction in rice.

Science.gov (United States)

Chiu, Chai Hao; Choi, Jeongmin; Paszkowski, Uta

2018-01-01

Perception of arbuscular mycorrhizal fungi (AMF) triggers distinct plant signalling responses for parallel establishment of symbiosis and induction of lateral root formation. Rice receptor kinase CHITIN ELICITOR RECEPTOR KINASE 1 (CERK1) and α/β-fold hydrolase DWARF14-LIKE (D14L) are involved in pre-symbiotic fungal perception. After 6 wk post-inoculation with Rhizophagus irregularis, root developmental responses, fungal colonization and transcriptional responses were monitored in two independent cerk1 null mutants; a deletion mutant lacking D14L, and with D14L complemented as well as their respective wild-type cultivars (cv Nipponbare and Nihonmasari). Here we show that although essential for symbiosis, D14L is dispensable for AMF-induced root architectural modulation, which conversely relies on CERK1. Our results demonstrate uncoupling of symbiosis and the symbiotic root developmental signalling during pre-symbiosis with CERK1 required for AMF-induced root architectural changes. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Studies concerning the production of volatile oil, rhizomes and roots, to different genotypes of Valeriana officinalis L.

Directory of Open Access Journals (Sweden)

Mihai Radu POP

2010-11-01

Full Text Available Valeriana officinalis L. is considered to pertain to European species, with great ecologic plasticity, which allows its adaptation to climate conditions characteristics to plain areas and also to mountain areas up to an altitude of 2400 meters. The species is a well-known curative plant, with a long history and multiple uses. Essential oils deriving from this species revealed the interest of researchers in food industry, cosmetics and officinal industry, furthermore being used as additives too.The raw material from which essential oils are being extracted is represented mainly by rhizomes and roots. This study has the purpose to emphasize the differences of essential oils production registered based upon the genotypes diversity. Thus, 11 experimental variants have been used, with biologic material of different origin, from Romania, Poland, Germany and Russia; they have been measured in relation to their production of rhizomes, roots and volatile oil, in the ecological conditions of Brasov, Romania.The results proved the superiority of the variants was used Romanian variety M-100, but have also revealed a negative correlation between capacity and essential oil biosynthesis.

Repression of BLADE-ON-PETIOLE genes by KNOX homeodomain protein BREVIPEDICELLUS is essential for differentiation of secondary xylem in Arabidopsis root.

Science.gov (United States)

Woerlen, Natalie; Allam, Gamalat; Popescu, Adina; Corrigan, Laura; Pautot, Véronique; Hepworth, Shelley R

2017-06-01

Repression of boundary genes by KNOTTED1-like homeodomain transcription factor BREVIPEDICELLUS promotes the differentiation of phase II secondary xylem in Arabidopsis roots. Plant growth and development relies on the activity of meristems. Boundaries are domains of restricted growth that separate forming organs and the meristem. Class I KNOX homeodomain transcription factors are important regulators of meristem maintenance. Members of this class including BREVIDICELLUS also called KNOTTED-LIKE FROM ARABIDOPSIS THALIANA1 (BP/KNAT1) fulfill this function in part by spatially regulating boundary genes. The vascular cambium is a lateral meristem that allows for radial expansion of organs during secondary growth. We show here that BP/KNAT1 repression of boundary genes plays a crucial role in root secondary growth. In particular, exclusion of BLADE-ON-PETIOLE1/2 (BOP1/2) and other members of this module from xylem is required for the differentiation of lignified fibers and vessels during the xylem expansion phase of root thickening. These data reveal a previously undiscovered role for boundary genes in the root and shed light on mechanisms controlling wood development in trees.

The persistence of the gravity signal in flax roots

Science.gov (United States)

Hasenstein, Karl H.

Although the presentation time of gravitropism has been studied, no data exist as to how long a reorientation stimulus affects the gravitropic response of a root. We tested the duration of gravitropic curvature in roots of Linum usitatissimum after reversing a one hour, 90 degree gravistimulus by increasing time intervals in vertical orientation before clinorotating the roots and acquiring infrared digital images. Clinorotation was performed either parallel or perpendicular to the gravity vector. Under either condition the gravistimulus affected curvature during clinorotation only between two to three minutes. Maximal curvature after one minute of vertical reorientation was 15 degrees within one hour. After three minutes in vertical orientation the observed curvature was not statistically different from vertically growing roots. In both orientations, maximum curvature occurred after 1hr. Perpendicular (horizontal) clinorotation showed decreasing curvature with increasing reorientation time. Parallel (vertical) clinorotation resulted in greater variability to the reorientation time. These data indicate that the gravity stimulus operates essentially memory free and that clinorotation affects the gravity response. Therefore all aspects of clinorotation need to be studied before an assessment of clinostats for the simulation of microgravity is possible and a time limit for memory effects of mechanostimulation can be determined.

An evaluation of inexpensive methods for root image acquisition when using rhizotrons.

Science.gov (United States)

Mohamed, Awaz; Monnier, Yogan; Mao, Zhun; Lobet, Guillaume; Maeght, Jean-Luc; Ramel, Merlin; Stokes, Alexia

2017-01-01

Belowground processes play an essential role in ecosystem nutrient cycling and the global carbon budget cycle. Quantifying fine root growth is crucial to the understanding of ecosystem structure and function and in predicting how ecosystems respond to climate variability. A better understanding of root system growth is necessary, but choosing the best method of observation is complex, especially in the natural soil environment. Here, we compare five methods of root image acquisition using inexpensive technology that is currently available on the market: flatbed scanner, handheld scanner, manual tracing, a smartphone application scanner and a time-lapse camera. Using the five methods, root elongation rate (RER) was measured for three months, on roots of hybrid walnut ( Juglans nigra  ×  Juglans regia L.) in rhizotrons installed in agroforests. When all methods were compared together, there were no significant differences in relative cumulative root length. However, the time-lapse camera and the manual tracing method significantly overestimated the relative mean diameter of roots compared to the three scanning methods. The smartphone scanning application was found to perform best overall when considering image quality and ease of use in the field. The automatic time-lapse camera was useful for measuring RER over several months without any human intervention. Our results show that inexpensive scanning and automated methods provide correct measurements of root elongation and length (but not diameter when using the time-lapse camera). These methods are capable of detecting fine roots to a diameter of 0.1 mm and can therefore be selected by the user depending on the data required.

Potential involvement of drought-induced Ran GTPase CLRan1 in root growth enhancement in a xerophyte wild watermelon.

Science.gov (United States)

Akashi, Kinya; Yoshimura, Kazuya; Kajikawa, Masataka; Hanada, Kouhei; Kosaka, Rina; Kato, Atsushi; Katoh, Akira; Nanasato, Yoshihiko; Tsujimoto, Hisashi; Yokota, Akiho

2016-10-01

Enhanced root growth is known as the survival strategy of plants under drought. Previous proteome analysis in drought-resistant wild watermelon has shown that Ran GTPase, an essential regulator of cell division and proliferation, was induced in the roots under drought. In this study, two cDNAs were isolated from wild watermelon, CLRan1 and CLRan2, which showed a high degree of structural similarity with those of other plant Ran GTPases. Quantitative RT-PCR and promoter-GUS assays suggested that CLRan1 was expressed mainly in the root apex and lateral root primordia, whereas CLRan2 was more broadly expressed in other part of the roots. Immunoblotting analysis confirmed that the abundance of CLRan proteins was elevated in the root apex region under drought stress. Transgenic Arabidopsis overexpressing CLRan1 showed enhanced primary root growth, and the growth was maintained under osmotic stress, indicating that CLRan1 functions as a positive factor for maintaining root growth under stress conditions.

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster.

Science.gov (United States)

Danjon, Frédéric; Caplan, Joshua S; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account for the fact that root systems are comprised of multiple types of roots. We assessed whether the relationship between CSD and Vd varies as a function of root type. Additionally, we sought to identify a more accurate and time-efficient method for estimating missing root volume than is currently available. We used a database that described the 3D root architecture of Pinus pinaster root systems (5, 12, or 19 years) from a stand in southwest France. We determined the relationship between CSD and Vd for 10,000 root segments from intact root branches. Models were specified that did and did not account for root type. The relationships were then applied to the diameters of 11,000 broken root ends to estimate the volume of missing roots. CSD was nearly linearly related to the square root of Vd, but the slope of the curve varied greatly as a function of root type. Sinkers and deep roots tapered rapidly, as they were limited by available soil depth. Distal shallow roots tapered gradually, as they were less limited spatially. We estimated that younger trees lost an average of 17% of root volume when excavated, while older trees lost 4%. Missing volumes were smallest in the central parts of root systems and largest in distal shallow roots. The slopes of the curves for each root type are synthetic parameters that account for differentiation due to genetics, soil properties, or mechanical stimuli. Accounting for this differentiation is critical to estimating root loss accurately.

Chemical Variability and Biological Activities of Brassica rapa var. rapifera Parts Essential Oils Depending on Geographic Variation and Extraction Technique.

Science.gov (United States)

Saka, Boualem; Djouahri, Abderrahmane; Djerrad, Zineb; Terfi, Souhila; Aberrane, Sihem; Sabaou, Nasserdine; Baaliouamer, Aoumeur; Boudarene, Lynda

2017-06-01

In the present work, the Brassica rapa var. rapifera parts essential oils and their antioxidant and antimicrobial activities were investigated for the first time depending on geographic origin and extraction technique. Gas-chromatography (GC) and GC/mass spectrometry (MS) analyses showed several constituents, including alcohols, aldehydes, esters, ketones, norisoprenoids, terpenic, nitrogen and sulphur compounds, totalizing 38 and 41 compounds in leaves and root essential oils, respectively. Nitrogen compounds were the main volatiles in leaves essential oils and sulphur compounds were the main volatiles in root essential oils. Qualitative and quantitative differences were found among B. rapa var. rapifera parts essential oils collected from different locations and extracted by hydrodistillation and microwave-assisted hydrodistillation techniques. Furthermore, our findings showed a high variability for both antioxidant and antimicrobial activities. The highlighted variability reflects the high impact of plant part, geographic variation and extraction technique on chemical composition and biological activities, which led to conclude that we should select essential oils to be investigated carefully depending on these factors, in order to isolate the bioactive components or to have the best quality of essential oil in terms of biological activities and preventive effects in food. © 2017 Wiley-VHCA AG, Zurich, Switzerland.

A Root-Colonizing Pseudomonad Lessens Stress Responses in Wheat Imposed by CuO Nanoparticles.

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Melanie Wright

Full Text Available Nanoparticle (NPs containing essential metals are being considered in formulations of fertilizers to boost plant nutrition in soils with low metal bioavailability. This paper addresses whether colonization of wheat roots by the bacterium, Pseudomonas chlororaphis O6 (PcO6, protected roots from the reduced elongation caused by CuO NPs. There was a trend for slightly elongated roots when seedlings with roots colonized by PcO6 were grown with CuO NPs; the density of bacterial cells on the root surface was not altered by the NPs. Accumulations of reactive oxygen species in the plant root cells caused by CuO NPs were little affected by root colonization. However, bacterial colonization did reduce the extent of expression of an array of genes associated with plant responses to stress induced by root exposure to CuO NPs. PcO6 colonization also reduced the levels of two important chelators of Cu ions, citric and malic acids, in the rhizosphere solution; presumably because these acids were used as nutrients for bacterial growth. There was a trend for lower levels of soluble Cu in the rhizosphere solution and reduced Cu loads in the true leaves with PcO6 colonization. These studies indicate that root colonization by bacterial cells modulates plant responses to contact with CuO NPs.

LAHAN BASAH BUATAN SEBAGAI MEDIA PENGOLAHAN AIR LIMBAH BUDIDAYA UDANG VANAME (Litopenaeus vannamaei BERSALINITAS RENDAH (Constructed Wetland for Remediation of Brackish Wastewater from White Shrimp (Litopenaeus vannamaei Cultivation

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Syafrudin Raharjo

2015-07-01

Full Text Available ABSTRAK Air limbah budidaya udang berjumlah relatif banyak dan mengandung bahan pencemar yang berpotensi mencemari lingkungan. Di sisi lain, air limbah tersebut dapat diolah dan diresirkulasi dalam sistem budidaya udang. Tujuan penelitian ini adalah untuk menyelidiki kemampuan sistem lahan basah buatan-aliran air permukaan (LBB-AAP yang ditanami dengan rumput vetiver (Chrysopogon zizanioides, L dalam menghilangkan pencemar (NO2-, NO3-, NH3, NH4+ dan PO43- dari air limbah budidaya udang vaname (Litopenaeus vannamaei kondisi mesohaline dan mengevaluasi kinerja sistem tersebut. Hasil penelitian menunjukkan bahwa sistem LBB-AAP mampu mengeliminasi parameter NO2-, NO3-, NH3, NH4+ dan PO43- secara signifikan. Rumput vetiver mampu tumbuh pada kondisi mesohaline dan dapat melakukan remediasi air limbah tersebut. Serapan rumput vetiver dalam sistem LBB-AAP untuk NO3-, NH4+ dan PO43-adalah 28, 63 dan 83 %. Desain konstruksi LBB-AAP tipe Hidroponik menunjukkan kinerja terbaik dalam pengendalian air limbah budidaya udang vaname dibandingkan dengan tipe emergent, kombinasi hidroponik dan emergent. ABSTRACT The amount of wastewater shrimp cultivation is relatively/too much, contains a variety of pollutants and potentially pollute the environment. In other side, The wastewater can be treated and also recirculated in shrimp cultivation systems. The purpose of research is to investigate the ability of flow water surface-constructed wetland system (FWS-CWs that planted vetiver grass (Chrysopogon zizanioides, L that removes of pollutants (NO2-, NO3-, NH3, NH4+ and PO43- from wastewater vaname shrimp cultivation (Litopenaeus vannamaei on conditions mesohaline and with the aim of evaluating the performance of the system. The results of the research indicate that FWS-CWs able to eliminate the parameters significantly of NO2-, NO3-, NH3, NH4+ and PO43-. Vetiver grass could grow on mesohaline conditions and it can perform remediation of the wastewater. Uptake of

Characterizing pathways by which gravitropic effectors could move from the root cap to the root of primary roots of Zea mays

Science.gov (United States)

Moore, R.; McClelen, C. E.

1989-01-01

Plasmodesmata linking the root cap and root in primary roots Zea mays are restricted to approx. 400 protodermal cells bordering approx. 110000 microns2 of the calyptrogen of the root cap. This area is less than 10% of the cross-sectional area of the root-tip at the cap junction. Therefore, gravitropic effectors moving from the root cap to the root can move symplastically only through a relatively small area in the centre of the root. Decapped roots are non-responsive to gravity. However, decapped roots whose caps are replaced immediately after decapping are strongly graviresponsive. Thus, gravicurvature occurs only when the root cap contacts the root, and symplastic continuity between the cap and root is not required for gravicurvature. Completely removing mucilage from the root tip renders the root non-responsive to gravity. Taken together, these data suggest that gravitropic effectors move apoplastically through mucilage from the cap to the root.

Root anatomy, morphology, and longevity among root orders in Vaccinium corymbosum (Ericaceae).

Science.gov (United States)

Valenzuela-Estrada, Luis R; Vera-Caraballo, Vivianette; Ruth, Leah E; Eissenstat, David M

2008-12-01

Understanding root processes at the whole-plant or ecosystem scales requires an accounting of the range of functions within a root system. Studying root traits based on their branching order can be a powerful approach to understanding this complex system. The current study examined the highly branched root system of the ericoid plant, Vaccinium corymbosum L. (highbush blueberry) by classifying its root orders with a modified version of the morphometric approach similar to that used in hydrology for stream classification. Root anatomy provided valuable insight into variation in root function across orders. The more permanent portion of the root system occurred in 4th- and higher-order roots. Roots in these orders had radial growth; the lowest specific root length, N:C ratios, and mycorrhizal colonization; the highest tissue density and vessel number; and the coarsest root diameter. The ephemeral portion of the root system was mainly in the first three root orders. First- and 2nd-order roots were nearly anatomically identical, with similar mycorrhizal colonization and diameter, and also, despite being extremely fine, median lifespans were not very short (115-120 d; estimated with minirhizotrons). Our research underscores the value of examining root traits by root order and its implications to understanding belowground processes.

OpenSimRoot: widening the scope and application of root architectural models.

Science.gov (United States)

Postma, Johannes A; Kuppe, Christian; Owen, Markus R; Mellor, Nathan; Griffiths, Marcus; Bennett, Malcolm J; Lynch, Jonathan P; Watt, Michelle

2017-08-01

OpenSimRoot is an open-source, functional-structural plant model and mathematical description of root growth and function. We describe OpenSimRoot and its functionality to broaden the benefits of root modeling to the plant science community. OpenSimRoot is an extended version of SimRoot, established to simulate root system architecture, nutrient acquisition and plant growth. OpenSimRoot has a plugin, modular infrastructure, coupling single plant and crop stands to soil nutrient and water transport models. It estimates the value of root traits for water and nutrient acquisition in environments and plant species. The flexible OpenSimRoot design allows upscaling from root anatomy to plant community to estimate the following: resource costs of developmental and anatomical traits; trait synergisms; and (interspecies) root competition. OpenSimRoot can model three-dimensional images from magnetic resonance imaging (MRI) and X-ray computed tomography (CT) of roots in soil. New modules include: soil water-dependent water uptake and xylem flow; tiller formation; evapotranspiration; simultaneous simulation of mobile solutes; mesh refinement; and root growth plasticity. OpenSimRoot integrates plant phenotypic data with environmental metadata to support experimental designs and to gain a mechanistic understanding at system scales. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Light as stress factor to plant roots - case of root halotropism.

Science.gov (United States)

Yokawa, Ken; Fasano, Rossella; Kagenishi, Tomoko; Baluška, František

2014-01-01

Despite growing underground, largely in darkness, roots emerge to be very sensitive to light. Recently, several important papers have been published which reveal that plant roots not only express all known light receptors but also that their growth, physiology and adaptive stress responses are light-sensitive. In Arabidopsis, illumination of roots speeds-up root growth via reactive oxygen species-mediated and F-actin dependent process. On the other hand, keeping Arabidopsis roots in darkness alters F-actin distribution, polar localization of PIN proteins as well as polar transport of auxin. Several signaling components activated by phytohormones are overlapping with light-related signaling cascade. We demonstrated that the sensitivity of roots to salinity is altered in the light-grown Arabidopsis roots. Particularly, light-exposed roots are less effective in their salt-avoidance behavior known as root halotropism. Here we discuss these new aspects of light-mediated root behavior from cellular, physiological and evolutionary perspectives.

effects of different concentrations of auxins on rooting and root

African Journals Online (AJOL)

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ABSTRACT: The effect of auxins and their different concentrations on rooting and root ... primary root length and the longest primary root was recorded with the ... ceuticals, lubricants, foods, electrical insulators, .... stem cuttings of jojoba treated with IBA and NAA, .... increasing cell division and enlargement at each.

Seedling root targets

Science.gov (United States)

Diane L. Haase

2011-01-01

Roots are critical to seedling performance after outplanting. Although root quality is not as quick and simple to measure as shoot quality, target root characteristics should be included in any seedling quality assessment program. This paper provides a brief review of root characteristics most commonly targeted for operational seedling production. These are: root mass...

Carbon storage and nutrient mobilization from soil minerals by deep roots and rhizospheres

DEFF Research Database (Denmark)

Callesen, Ingeborg; Harrison, Robert; Stupak, Inge

2016-01-01

studies on potential release of nutrients due to chemical weathering indicate the importance of root access to deep soil layers. Nutrient release profiles clearly indicate depletion in the top layers and a much higher potential in B and C horizons. Reviewing potential sustainability of nutrient supplies......Roots mobilize nutrients via deep soil penetration and rhizosphere processes inducing weathering of primary minerals. These processes contribute to C transfer to soils and to tree nutrition. Assessments of these characteristics and processes of root systems are important for understanding long......-term supplies of nutrient elements essential for forest growth and resilience. Research and techniques have significantly advanced since Olof Tamm’s 1934 “base mineral index” for Swedish forest soils, and the basic nutrient budget estimates for whole-tree harvesting systems of the 1970s. Recent research...

Effect of Root Moisture Content and Diameter on Root Tensile Properties

Science.gov (United States)

Yang, Yuanjun; Chen, Lihua; Li, Ning; Zhang, Qiufen

2016-01-01

The stabilization of slopes by vegetation has been a topical issue for many years. Root mechanical characteristics significantly influence soil reinforcement; therefore it is necessary to research into the indicators of root tensile properties. In this study, we explored the influence of root moisture content on tensile resistance and strength with different root diameters and for different tree species. Betula platyphylla, Quercus mongolica, Pinus tabulaeformis, and Larix gmelinii, the most popular tree species used for slope stabilization in the rocky mountainous areas of northern China, were used in this study. A tensile test was conducted after root samples were grouped by diameter and moisture content. The results showedthat:1) root moisture content had a significant influence on tensile properties; 2) slightly loss of root moisture content could enhance tensile strength, but too much loss of water resulted in weaker capacity for root elongation, and consequently reduced tensile strength; 3) root diameter had a strong positive correlation with tensile resistance; and4) the roots of Betula platyphylla had the best tensile properties when both diameter and moisture content being controlled. These findings improve our understanding of root tensile properties with root size and moisture, and could be useful for slope stabilization using vegetation. PMID:27003872

Rapid changes in protein phosphorylation associated with gravity perception in corn roots

International Nuclear Information System (INIS)

McFadden, J.J.; Poovaiah, B.W.

1987-01-01

A previous paper from this laboratory showed calcium- and calmodulin-dependent in vivo protein phosphorylation in corn root tips. The authors show that rapid changes in calcium-dependent protein phosphorylation are involved in light-dependent graviperception in corn root tips. Corn seedlings (Zea mays L, cv Merit) were grown in the dark for 3 d, then apical root segments were harvested in dim green light to measure in vivo protein phosphorylation. Segments were incubated with 0.5 mCi 32 P for 1 h, then immediately frozen in liquid N 2 or first treated with either 7 min light, or 7 min light plus 1 mM EGTA and 10 μM A23187. Labeled proteins were separated by 2D gel electrophoresis and detected by autoradiography. Light caused rapid and specific promotion of phosphorylation of 5 polypeptides. The increases in protein phosphorylation were reversed by treating with EGTA and A23187. The authors postulate that these changes in protein phosphorylation are an essential part of the light-dependent gravity response in Merit roots

Fractionation and evaluation of proteins in roots of Echinacea purpurea (L. Moench

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Balciunaite Gabriele

2015-12-01

Full Text Available Echinacea purpurea (L. Moench, a member of the Asteraceae family, is a plant rich in flavonoids, essential oils, phenolic compounds, saponins, polysaccharides and glycoproteins. The aim of the study was to evaluate the protein content in dried roots of Echinacea purpurea (L. Moench after homogenization of roots with liquid nitrogen, extraction in 0.01 mol L-1 phosphate-buffered saline (PBS and purification followed by fractionation of proteins using gel filtration chromatography. Total concentration of proteins was measured using the Bradford method, and evaluation of the molecular mass of proteins was accomplished by applying the SDS-PAGE gel electrophoresis. The Bradford assay revealed that the highest concentration of proteins in fractions collected after gel filtration chomatography was 4.66–6.07 mg mL-1. Glycoproteins, alkamides and polysaccharides in roots of Echinacea purpurea (L. Moench are chemical compounds that are responsible for their immunomodulatory properties. However, information about the difference of protein contents in fresh and dried roots of E. purpurea is insufficient.

Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins

Science.gov (United States)

Zhang, Kewei; Novak, Ondrej; Wei, Zhaoyang; Gou, Mingyue; Zhang, Xuebin; Yu, Yong; Yang, Huijun; Cai, Yuanheng; Strnad, Miroslav; Liu, Chang-Jun

2014-02-01

Cytokinins are a major group of phytohormones regulating plant growth, development and stress responses. However, in contrast to the well-defined polar transport of auxins, the molecular basis of cytokinin transport is poorly understood. Here we show that an ATP-binding cassette transporter in Arabidopsis, AtABCG14, is essential for the acropetal (root to shoot) translocation of the root-synthesized cytokinins. AtABCG14 is expressed primarily in the pericycle and stelar cells of roots. Knocking out AtABCG14 strongly impairs the translocation of trans-zeatin (tZ)-type cytokinins from roots to shoots, thereby affecting the plant’s growth and development. AtABCG14 localizes to the plasma membrane of transformed cells. In planta feeding of C14 or C13-labelled tZ suggests that it acts as an efflux pump and its presence in the cells directly correlates with the transport of the fed cytokinin. Therefore, AtABCG14 is a transporter likely involved in the long-distance translocation of cytokinins in planta.

Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program?

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Rocío Olmo

2017-05-01

Full Text Available Root-knot nematodes (RKNs; Meloidogyne spp. induce feeding cells (giant cells; GCs inside a pseudo-organ (gall from still unknown root cells. Understanding GCs ontogeny is essential to the basic knowledge of RKN–plant interaction and to discover novel and effective control strategies. Hence, we report for the first time in a model plant, Arabidopsis, molecular, and cellular features concerning ectopic de novo organogenesis of RKNs GCs in leaves. RKNs induce GCs in leaves with irregular shape, a reticulated cytosol, and fragmented vacuoles as GCs from roots. Leaf cells around the nematode enter G2-M shown by ProCycB1;1:CycB1;1(NT-GUS expression, consistent to multinucleated GCs. In addition, GCs nuclei present irregular and varied sizes. All these characteristics mentioned, being equivalent to GCs in root-galls. RKNs complete their life cycle forming a gall/callus-like structure in the leaf vascular tissues resembling auxin-induced callus with an auxin-response maxima, indicated by high expression of DR5::GUS that is dependent on leaf auxin-transport. Notably, induction of leaves calli/GCs requires molecular components from roots crucial for lateral roots (LRs, auxin-induced callus and root-gall formation, i.e., LBD16. Hence, LBD16 is a xylem pole pericycle specific and local marker in LR primordia unexpectedly induced locally in the vascular tissue of leaves after RKN infection. LBD16 is also fundamental for feeding site formation as RKNs could not stablish in 35S::LBD16-SRDX leaves, and likely it is also a conserved molecular hub between biotic and developmental signals in Arabidopsis either in roots or leaves. Moreover, RKNs induce the ectopic development of roots from leaf and root-galls, also formed in mutants compromised in LR formation, arf7/arf19, slr, and alf4. Therefore, nematodes must target molecular signatures to induce post-embryogenic de novo organogenesis through the LBD16 callus formation pathway partially different from those

Immediate implant placement in canine region using root membrane technique with follow up 2 years case report

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Mohamed Dohiem

2018-06-01

Full Text Available Following tooth extraction the underlying bone would undergo a lot of a remodeling phases leading to horizontal and vertical bone loss especially in the anterior teeth which results in loss of buccal plate of bone. The presence of sufficient thickness of buccal bone is essential for preservation of natural look and installed implant. A technique was introduced to preserve the sufficient thickness of buccal plate in the anterior region known as root membrane (root shielding. This technique would aim to preserve the root periodontal ligament intact with the root to preserve the buccal plate of bone and prevent the ridge from collapsing thus achieving an esthetic appearance. This technique would Section of the teeth in two halves buccolingually, leaving the buccal fragment of root intact and then placing the implant lingual to it.

Piriformospora indica root colonization triggers local and systemic root responses and inhibits secondary colonization of distal roots.

Science.gov (United States)

Pedrotti, Lorenzo; Mueller, Martin J; Waller, Frank

2013-01-01

Piriformosporaindica is a basidiomycete fungus colonizing roots of a wide range of higher plants, including crop plants and the model plant Arabidopsis thaliana. Previous studies have shown that P. indica improves growth, and enhances systemic pathogen resistance in leaves of host plants. To investigate systemic effects within the root system, we established a hydroponic split-root cultivation system for Arabidopsis. Using quantitative real-time PCR, we show that initial P. indica colonization triggers a local, transient response of several defense-related transcripts, of which some were also induced in shoots and in distal, non-colonized roots of the same plant. Systemic effects on distal roots included the inhibition of secondary P. indica colonization. Faster and stronger induction of defense-related transcripts during secondary inoculation revealed that a P. indica pretreatment triggers root-wide priming of defense responses, which could cause the observed reduction of secondary colonization levels. Secondary P. indica colonization also induced defense responses in distant, already colonized parts of the root. Endophytic fungi therefore trigger a spatially specific response in directly colonized and in systemic root tissues of host plants.

Root canal treatment of bilateral three-rooted maxillary first premolars

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Bhavana Gandhi

2012-01-01

Full Text Available In endodontics, several anatomic variations occur in teeth, both externally and in the internal root morphology, which play a very significant role in the diagnosis and treatment outcome. A thorough knowledge of the root canal anatomy, careful interpretation of the angled radiographs, proper endodontic access cavity preparation, and exploration of the root canal are the prerequisites for endodontic success. In a maxillary first premolar, it is rare to find extra roots and canals, and the aim of the present article is to report a case about the successful diagnosis and clinical management of bilateral three-rooted maxillary first premolars, with three independent root canals.

Expressed sequence tag analysis of functional genes associated with adventitious rooting in Liriodendron hybrids.

Science.gov (United States)

Zhong, Y D; Sun, X Y; Liu, E Y; Li, Y Q; Gao, Z; Yu, F X

2016-06-24

Liriodendron hybrids (Liriodendron chinense x L. tulipifera) are important landscaping and afforestation hardwood trees. To date, little genomic research on adventitious rooting has been reported in these hybrids, as well as in the genus Liriodendron. In the present study, we used adventitious roots to construct the first cDNA library for Liriodendron hybrids. A total of 5176 expressed sequence tags (ESTs) were generated and clustered into 2921 unigenes. Among these unigenes, 2547 had significant homology to the non-redundant protein database representing a wide variety of putative functions. Homologs of these genes regulated many aspects of adventitious rooting, including those for auxin signal transduction and root hair development. Results of quantitative real-time polymerase chain reaction showed that AUX1, IRE, and FB1 were highly expressed in adventitious roots and the expression of AUX1, ARF1, NAC1, RHD1, and IRE increased during the development of adventitious roots. Additionally, 181 simple sequence repeats were identified from 166 ESTs and more than 91.16% of these were dinucleotide and trinucleotide repeats. To the best of our knowledge, the present study reports the identification of the genes associated with adventitious rooting in the genus Liriodendron for the first time and provides a valuable resource for future genomic studies. Expression analysis of selected genes could allow us to identify regulatory genes that may be essential for adventitious rooting.

The plasma membrane H⁺ -ATPase AHA2 contributes to the root architecture in response to different nitrogen supply

DEFF Research Database (Denmark)

Młodzińska, Ewa; Kłobus, Grażyna; Christensen, Monica Daugbjerg

2015-01-01

of lateral root primordia, root elongation and increase the root biomass. However, the signal transduction mechanisms, which enable roots to sense changes in different mineral environments and match their growth and development patterns to actual conditions in the soil, are still unknown. Most recent...... comments have focused on one of the essential macroelements, namely nitrogen, and its role in the modification of the root architecture of Arabidopsis thaliana. As yet, not all elements of the signal transduction pathway leading to the perception of the nitrate stimulus, and hence to anatomical changes...... of the root, which allow for adaptation to variable ion concentrations in the soil, are known. Our data demonstrate that primary and lateral root length were shorter lower in aha2 mutant lines compared to wild-type plants in response to a variable nitrogen source. This suggests that the plasma membrane proton...

Benzyl isothiocyanate, a major component from the roots of Salvadora persica is highly active against Gram-negative bacteria.

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Abier Sofrata

Full Text Available Plants produce a number of antimicrobial substances and the roots of the shrub Salvadora persica have been demonstrated to possess antimicrobial activity. Sticks from the roots of S. persica, Miswak sticks, have been used for centuries as a traditional method of cleaning teeth. Diverging reports on the chemical nature and antimicrobial repertoire of the chewing sticks from S. persica led us to explore its antibacterial properties against a panel of pathogenic or commensal bacteria and to identify the antibacterial component/s by methodical chemical characterization. S. persica root essential oil was prepared by steam distillation and solid-phase microextraction was used to sample volatiles released from fresh root. The active compound was identified by gas chromatography-mass spectrometry and antibacterial assays. The antibacterial compound was isolated using medium-pressure liquid chromatography. Transmission electron microscopy was used to visualize the effect on bacterial cells. The main antibacterial component of both S. persica root extracts and volatiles was benzyl isothiocyanate. Root extracts as well as commercial synthetic benzyl isothiocyanate exhibited rapid and strong bactericidal effect against oral pathogens involved in periodontal disease as well as against other Gram-negative bacteria, while Gram-positive bacteria mainly displayed growth inhibition or remained unaffected. The short exposure needed to obtain bactericidal effect implies that the chewing sticks and the essential oil may have a specific role in treatment of periodontal disease in reducing Gram-negative periodontal pathogens. Our results indicate the need for further investigation into the mechanism of the specific killing of Gram-negative bacteria by S. persica root stick extracts and its active component benzyl isothiocyanate.

The Effect of Salinity Stress on the Growth, quantity and quality of Essential oil of Lavender (Lavandula angustifulia Miller

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sarah khorasaninejad

2017-02-01

essential oil are flowers and leaves. Materials and Methods: This experiment was carried out using a randomized complete block design with three replications to study the effect of salinity stress on growth parameters, essential oil constituents and yield of Lavender (Lavandula angustifulia at the Horticultural Sciences Department, Plant Product faculty, Gorgan Agricultural Sciences and Natural Resources University. Lavender plants were obtained from seed plantation. The seeds in this investigation were obtained from the Institution of Forests and Range researches in Tehran. After three weeks stratification (4ºC and germination, five plants were transplanted into similarized pots that were filled with perlite and cocopeat (2:1. Irrigation treatments with hydroponic solution were completed during germination until stage of 6-8 leaf. Then, five levels of salt stress, including 0, 25, 50, 75 and 100 mM NaCl levels were investigated during four months, applied in hydroponic. Length, shoot wet weight, root wet weight and root dry weight were measured at full flowering stage (after five months. The same time in order to evaluate percentage and composition essential oil, each plant were harvested and dried under room condition. After two weeks, Clevenger method was used to extract the essential oil from the plant foliage. The obtained essential oil were measured for calculating of essential oils percentage and then, analyzed by using GC/MS (Gas choromatography-mass spectrometry for identification and quantification of the components. Statistical analysis of data was used with SAS software and charts preparing was done with Excel software. Mean comparison with LSD’s test in 5 percent probability was used. Results and Discussion: Results indicated that salinity stress motivated a significant influence in all of the growth parameters and essential oil yield and percent in P < 0.05. Increasing salt of the soil led to reduce in stem length, shoot wet weight, root wet weight and root

Root canal treatment of a maxillary first premolar with three roots

OpenAIRE

Mathew, Josey; Devadathan, Aravindan; Syriac, Gibi; Shamini, Sai

2015-01-01

Successful root canal treatment needs a thorough knowledge of both internal and external anatomy of a tooth. Variations in root canal anatomy constitute an impressive challenge to the successful completion of endodontic treatment. Undetected extra roots and canals are a major reason for failed root canal treatment. Three separate roots in a maxillary first premolar have a very low incidence of 0.5?6%. Three rooted premolars are anatomically similar to molars and are sometimes called ?small mo...

Medico-legal aspects of vertical root fractures in root filled teeth

DEFF Research Database (Denmark)

Rosen, E; Tsesis, I; Tamse, A

2012-01-01

To analyse the medico-legal aspects of vertical root fracture (VRF) following root canal treatment (RCT).......To analyse the medico-legal aspects of vertical root fracture (VRF) following root canal treatment (RCT)....

A study of root canal morphology of human primary incisors and molars using cone beam computerized tomography: An in vitro study

OpenAIRE

Vivek Gaurav; Nikhil Srivastava; Vivek Rana; Vivek Kumar Adlakha

2013-01-01

Background: Variations in morphology of root canals in primary teeth usually leads to complications during and after endodontic therapy. To improve the success in endodontics, a thorough knowledge of the root canal morphology is essential. Aim: The aim of this study was to assess the variation in number and morphology of the root canals of primary incisors and molars and to study the applicability of cone beam computerized tomography (CBCT) in assessing the same. Settings and Design: A total ...

Effects of Minthostachys mollis essential oil and volatiles on seedlings of lettuce, tomato, cucumbre and Bidens pilosa.

OpenAIRE

Alonso Amelot, Miguel; Usubillaga, Alfredo; Avila Nuñez, Jorge Luis; Oliveros Bastidas, Alberto; Avendaño Meza, Marisabel

2007-01-01

Effects of Minthostachys mollis essential oil and volatiles on seedlings of lettuce, tomato, cucumbre and Bidens pilosa. (Alonso Amelot, Miguel; Usubillaga, Alfredo; Avila Nuñez, Jorge Luis; Oliveros Bastidas, Alberto y Avendaño Meza, Mairsabel) Abstract The extraction and chemical composition of essential oil of Minthostachys mollis (Kunth) Griseb (Lamiaceae) and its inhibitory effects on germation and shoot/root elongation of lettuce, tomato, cucumber and Bidens pilosa (L...

The Sensitivity of Endodontic Enterococcus spp. Strains to Geranium Essential Oil.

Science.gov (United States)

Łysakowska, Monika E; Sienkiewicz, Monika; Banaszek, Katarzyna; Sokołowski, Jerzy

2015-12-21

Enterococci are able to survive endodontic procedures and contribute to the failure of endodontic therapy. Thus, it is essential to identify novel ways of eradicating them from infected root canals. One such approach may be the use of antimicrobials such as plant essential oils. Enterococcal strains were isolated from endodontically treated teeth by standard microbiological methods. Susceptibility to antibiotics was evaluated by the disc-diffusion method. The minimal inhibitory concentration (MIC) of geranium essential oil was investigated by microdilution in 96-well microplates in Mueller Hinton Broth II. Biofilm eradication concentrations were checked in dentin tests. Geranium essential oil inhibited enterococcal strains at concentrations ranging from 1.8-4.5 mg/mL. No correlation was shown between resistance to antibiotics and the MICs of the test antimicrobials. The MICs of the test oil were lower than those found to show cytotoxic effects on the HMEC-1 cell line. Geranium essential oil eradicated enterococcal biofilm at concentrations of 150 mg/mL. Geranium essential oil inhibits the growth of endodontic enterococcal species at lower concentrations than those required to reach IC50 against the HMEC-1 cell line, and is effective against bacteria protected in biofilm at higher concentrations. In addition, bacteria do not develop resistance to essential oils. Hence, geranium essential oil represents a possible alternative to other antimicrobials during endodontic procedures.

Light and decapitation effects on in vitro rooting in maize root segments.

Science.gov (United States)

Golaz, F W; Pilet, P E

1985-10-01

The effects of white light and decapitation on the initiation and subsequent emergence and elongation of lateral roots of apical maize (Zea mays L. cv LG 11) root segments have been examined. The formation of lateral root primordium was inhibited by the white light. This inhibition did not depend upon the presence of the primary root tip. However, root decapitation induced a shift of the site of appearance of the most apical primordium towards the root apex, and a strong disturbance of the distribution pattern of primordium volumes along the root axis. White light had a significant effect neither on the distribution pattern of primordium volumes, nor on the period of primordium development (time interval required for the smallest detectable primordia to grow out as secondary roots). Thus, considering the rooting initiation and emergence, the light effect was restricted to the initiation phase only. Moreover, white light reduced lateral root elongation as well as primary root growth.

Characteristic chemical components of the essential oil from white kwao krua (Pueraria mirifica).

Science.gov (United States)

Yagi, Nobuo; Nakahashi, Hiroshi; Kobayashi, Tomohiro; Miyazawa, Mitsuo

2013-01-01

The components of the essential oil from the roots of Pueraria mirifica were analyzed by capillary gas chromatography-mass spectrometry (GC-MS). Eighty-two components, representing 88.5% of the total oil, were identified by GC-MS. The main component of the oil was 2-pentylfuran, followed by hexanal and hexadecanol. With regard to the odor components from the essential oil of P. mirifica as determined by gas chromatography-olfactometry and aroma extract dilution analysis, it was revealed that phenylacetaldehyde and (2E)-nonenal imparted the green odor of the oil, and geraniol contributed to the sweet odor.

Light as stress factor to plant roots – case of root halotropism

Science.gov (United States)

Yokawa, Ken; Fasano, Rossella; Kagenishi, Tomoko; Baluška, František

2014-01-01

Despite growing underground, largely in darkness, roots emerge to be very sensitive to light. Recently, several important papers have been published which reveal that plant roots not only express all known light receptors but also that their growth, physiology and adaptive stress responses are light-sensitive. In Arabidopsis, illumination of roots speeds-up root growth via reactive oxygen species-mediated and F-actin dependent process. On the other hand, keeping Arabidopsis roots in darkness alters F-actin distribution, polar localization of PIN proteins as well as polar transport of auxin. Several signaling components activated by phytohormones are overlapping with light-related signaling cascade. We demonstrated that the sensitivity of roots to salinity is altered in the light-grown Arabidopsis roots. Particularly, light-exposed roots are less effective in their salt-avoidance behavior known as root halotropism. Here we discuss these new aspects of light-mediated root behavior from cellular, physiological and evolutionary perspectives. PMID:25566292

Growth regulating properties of isoprene and isoprenoid-based essential oils.

Science.gov (United States)

Jones, Andrew Maxwell P; Shukla, Mukund R; Sherif, Sherif M; Brown, Paula B; Saxena, Praveen K

2016-01-01

Essential oils have growth regulating properties comparable to the well-documented methyl jasmonate and may be involved in localized and/or airborne plant communication. Aromatic plants employ large amounts of resources to produce essential oils. Some essential oils are known to contain compounds with plant growth regulating activities. However, the potential capacity of essential oils as airborne molecules able to modulate plant growth/development has remained uninvestigated. Here, we demonstrate that essential oils from eight taxonomically diverse plants applied in their airborne state inhibited auxin-induced elongation of Pisum sativum hypocotyls and Avena sativa coleoptiles. This response was also observed using five monoterpenes commonly found in essential oils as well as isoprene, the basic building block of terpenes. Upon transfer to ambient conditions, A. sativa coleoptiles resumed elongation, demonstrating an antagonistic relationship rather than toxicity. Inclusion of essential oils, monoterpenes, or isoprene into the headspace of culture vessels induced abnormal cellular growth along hypocotyls of Arabidopsis thaliana. These responses were also elicited by methyl jasmonate (MeJA); however, where methyl jasmonate inhibited root growth essential oils did not. Gene expression studies in A. thaliana also demonstrated differences between the MeJA and isoprenoid responses. This series of experiments clearly demonstrate that essential oils and their isoprenoid components interact with endogenous plant growth regulators when applied directly or as volatile components in the headspace. The similarities between isoprenoid and MeJA responses suggest that they may act in plant defence signalling. While further studies are needed to determine the ecological and evolutionary significance, the results of this study and the specialized anatomy associated with aromatic plants suggest that essential oils may act as airborne signalling molecules.

Tobacco Rotated with Rapeseed for Soil-Borne Phytophthora Pathogen Biocontrol: Mediated by Rapeseed Root Exudates

Directory of Open Access Journals (Sweden)

Yuting Fang

2016-06-01

Full Text Available Black shank, caused by Phytophthora parasitica var. nicotianae, is a widespread and destructive disease of tobacco. Crop rotation is essential in controlling black shank. Here, we confirmed that rotating black shank-infested fields with rapeseed (Brassica napus suppressed the incidence this disease. Further study demonstrated that rapeseed roots have a strong ability to attract zoospores and subsequently stop the swimming of zoospores into cystospores. Then, rapeseed roots secrete a series of antimicrobial compounds, including 2-butenoic acid, benzothiazole, 2-(methylthiobenzothiazole, 1-(4-ethylphenyl-ethanone, and 4-methoxyindole, to inhibit the cystospore germination and mycelial growth of P. parasitica var. nicotianae. Thus, rapeseed rotated with tobacco suppresses tobacco black shank disease through the chemical weapons secreted by rapeseed roots.

Comparison of Medial and Lateral Meniscus Root Tears.

Directory of Open Access Journals (Sweden)

Ji Hyun Koo

Full Text Available The meniscus root plays an essential role in maintaining the circumferential hoop tension and preventing meniscal displacement. Studies on meniscus root tears have investigated the relationship of osteoarthritis and an anterior cruciate ligament tear. However, few studies have directly compared the medial and lateral root tears. To assess the prevalence of meniscal extrusion and its relationship with clinical features in medial and lateral meniscus root tears, we performed a retrospective review of the magnetic resonance imaging (MRI results of 42 knee patients who had meniscus posterior horn root tears and who had undergone arthroscopic operations. The presence of meniscal extrusion was evaluated and the exact extent was measured from the tibial margin. The results were correlated with arthroscopic findings. Clinical features including patients' ages, joint abnormalities, and previous trauma histories were evaluated. Twenty-two patients had medial meniscus root tears (MMRTs and twenty patients had lateral meniscus root tears (LMRTs. Meniscal extrusion was present in 18 MMRT patients and one LMRT patient. The mean extent of extrusion was 4.2mm (range, 0.6 to 7.8 in the MMRT group and 0.9mm (range, -1.9 to 3.4 in the LMRT group. Five patients with MMRT had a history of trauma, while 19 patients with LMRT had a history of trauma. Three patients with MMRT had anterior cruciate ligament (ACL tears, while 19 patients with LMRT had ACL tears. The mean age of the patients was 52 years (range: 29-71 years and 30 years (range: 14-62 years in the MMRT and LMRT group, respectively. There was a significant correlation between a MMRT and meniscal extrusion (p<0.0001, and between an ACL tear and LMRT (p<0.0001. A history of trauma was significantly common in LMRT (p<0.0001. LMRT patients were significantly younger than MMRT patients (p<0.0001. Kellgren-Lawrence (K-L grade differed significantly between MMRT and LMRT group (p<0.0001. Meniscal extrusion is

Psoralen production in hairy roots and adventitious roots cultures of Psoralea coryfolia.

Science.gov (United States)

Baskaran, P; Jayabalan, N

2009-07-01

Psoralea corylifolia is an endangered plant producing various compounds of medical importance. Adventitious roots and hairy roots were induced in cultures prepared from hypocotyl explants. Psoralen content was evaluated in both root types grown either in suspension cultures or on agar solidified medium. Psoralen content was approximately 3 mg g(-1) DW in suspension grown hairy roots being higher than in solid grown hairy roots and in solid and suspension-grown adventitious roots.

Nonsurgical management of horizontal root fracture associated external root resorption and internal root resorption

Directory of Open Access Journals (Sweden)

Shiraz Pasha

2016-01-01

Full Text Available Horizontal root fractures, which frequently affect the upper incisors, usually result from a frontal impact. As a result, combined injuries occur in dental tissues such as the pulp, dentin, cementum, periodontal ligament, and alveolar bone. Internal root canal inflammatory resorption involves a progressive loss of intraradicular dentin without adjunctive deposition of hard tissues adjacent to the resorptive sites. It is frequently associated with chronic pulpal inflammation, and bacteria might be identified from the granulation tissues when the lesion is progressive to the extent that it is identifiable with routine radiographs. With the advancement in technology, it is imperative to use modern diagnostic tools such as cone beam computed tomography and radiovisuography to diagnose and confirm the presence and extent of resorptions and fractures and their exact location. This case report presents a rare case having internal root resorption and horizontal root fracture with external inflammatory root resorption both which were treated successfully following guidelines by International Association of Dental Traumatology by nonsurgical treatment with 1 year follow-up.

ROOT Reference Documentation

CERN Document Server

Fuakye, Eric Gyabeng

2017-01-01

A ROOT Reference Documentation has been implemented to generate all the lists of libraries needed for each ROOT class. Doxygen has no option to generate or add the lists of libraries for each ROOT class. Therefore shell scripting and a basic C++ program was employed to import the lists of libraries needed by each ROOT class.

X-ray computed tomography uncovers root-root interactions: quantifying spatial relationships between interacting root systems in three dimensions.

Science.gov (United States)

Paya, Alexander M; Silverberg, Jesse L; Padgett, Jennifer; Bauerle, Taryn L

2015-01-01

Research in the field of plant biology has recently demonstrated that inter- and intra-specific interactions belowground can dramatically alter root growth. Our aim was to answer questions related to the effect of inter- vs. intra-specific interactions on the growth and utilization of undisturbed space by fine roots within three dimensions (3D) using micro X-ray computed tomography. To achieve this, Populus tremuloides (quaking aspen) and Picea mariana (black spruce) seedlings were planted into containers as either solitary individuals, or inter-/intra-specific pairs, allowed to grow for 2 months, and 3D metrics developed in order to quantify their use of belowground space. In both aspen and spruce, inter-specific root interactions produced a shift in the vertical distribution of the root system volume, and deepened the average position of root tips when compared to intra-specifically growing seedlings. Inter-specific interactions also increased the minimum distance between root tips belonging to the same root system. There was no effect of belowground interactions on the radial distribution of roots, or the directionality of lateral root growth for either species. In conclusion, we found that significant differences were observed more often when comparing controls (solitary individuals) and paired seedlings (inter- or intra-specific), than when comparing inter- and intra-specifically growing seedlings. This would indicate that competition between neighboring seedlings was more responsible for shifting fine root growth in both species than was neighbor identity. However, significant inter- vs. intra-specific differences were observed, which further emphasizes the importance of biological interactions in competition studies.

Root hairs aid soil penetration by anchoring the root surface to pore walls.

Science.gov (United States)

Bengough, A Glyn; Loades, Kenneth; McKenzie, Blair M

2016-02-01

The physical role of root hairs in anchoring the root tip during soil penetration was examined. Experiments using a hairless maize mutant (Zea mays: rth3-3) and its wild-type counterpart measured the anchorage force between the primary root of maize and the soil to determine whether root hairs enabled seedling roots in artificial biopores to penetrate sandy loam soil (dry bulk density 1.0-1.5g cm(-3)). Time-lapse imaging was used to analyse root and seedling displacements in soil adjacent to a transparent Perspex interface. Peak anchorage forces were up to five times greater (2.5N cf. 0.5N) for wild-type roots than for hairless mutants in 1.2g cm(-3) soil. Root hair anchorage enabled better soil penetration for 1.0 or 1.2g cm(-3) soil, but there was no significant advantage of root hairs in the densest soil (1.5g cm(-3)). The anchorage force was insufficient to allow root penetration of the denser soil, probably because of less root hair penetration into pore walls and, consequently, poorer adhesion between the root hairs and the pore walls. Hairless seedlings took 33h to anchor themselves compared with 16h for wild-type roots in 1.2g cm(-3) soil. Caryopses were often pushed several millimetres out of the soil before the roots became anchored and hairless roots often never became anchored securely.The physical role of root hairs in anchoring the root tip may be important in loose seed beds above more compact soil layers and may also assist root tips to emerge from biopores and penetrate the bulk soil. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Measurements of water uptake of maize roots: the key function of lateral roots

Science.gov (United States)

Ahmed, M. A.; Zarebanadkouki, M.; Kroener, E.; Kaestner, A.; Carminati, A.

2014-12-01

Maize (Zea mays L.) is one of the most important crop worldwide. Despite its importance, there is limited information on the function of different root segments and root types of maize in extracting water from soils. Therefore, the aim of this study was to investigate locations of root water uptake in maize. We used neutron radiography to: 1) image the spatial distribution of maize roots in soil and 2) trace the transport of injected deuterated water (D2O) in soil and roots. Maizes were grown in aluminum containers (40×38×1 cm) filled with a sandy soil. When the plants were 16 days old, we injected D2O into selected soil regions containing primary, seminal and lateral roots. The experiments were performed during the day (transpiring plants) and night (not transpiring plants). The transport of D2O into roots was simulated using a new convection-diffusion numerical model of D2O transport into roots. By fitting the observed D2O transport we quantified the diffusional permeability and the water uptake of the different root segments. The maize root architecture consisted of a primary root, 4-5 seminal roots and many lateral roots connected to the primary and seminal roots. Laterals emerged from the proximal 15 cm of the primary and seminal roots. Water uptake occurred primarily in lateral roots. Lateral roots had the highest diffusional permeability (9.4×10-7), which was around six times higher that the diffusional permeability of the old seminal segments (1.4×10-7), and two times higher than the diffusional permeability of the young seminal segments (4.7×10-7). The radial flow of D2O into the lateral (6.7×10-5 ) was much higher than in the young seminal roots (1.1×10-12). The radial flow of D2O into the old seminal was negligible. We concluded that the function of the primary and seminal roots was to collect water from the lateral roots and transport it to the shoot. A maize root system with lateral roots branching from deep primary and seminal roots would be

Inhibitory effects of KN-93, an inhibitor of Ca2+ calmodulin-dependent protein kinase II, on light-regulated root gravitropism in maize

Science.gov (United States)

Feldman, L. J.; Hidaka, H.

1993-01-01

Light is essential for root gravitropism in Zea mays L., cultivar Merit. It is hypothesized that calcium mediates this light-regulated response. KN-93, an inhibitor of calcium/calmodulin kinase II (CaMK II), inhibits light-regulated root gravitropism but does not affect light perception. We hypothesize that CaMK II, or a homologue, operates late in the light/gravity signal transduction chain. Here we provide evidence suggesting a possible physiological involvement of CaMK II in root gravitropism in plants.

[Main Components of Xinjiang Lavender Essential Oil Determined by Partial Least Squares and Near Infrared Spectroscopy].

Science.gov (United States)

Liao, Xiang; Wang, Qing; Fu, Ji-hong; Tang, Jun

2015-09-01

This work was undertaken to establish a quantitative analysis model which can rapid determinate the content of linalool, linalyl acetate of Xinjiang lavender essential oil. Totally 165 lavender essential oil samples were measured by using near infrared absorption spectrum (NIR), after analyzing the near infrared spectral absorption peaks of all samples, lavender essential oil have abundant chemical information and the interference of random noise may be relatively low on the spectral intervals of 7100~4500 cm(-1). Thus, the PLS models was constructed by using this interval for further analysis. 8 abnormal samples were eliminated. Through the clustering method, 157 lavender essential oil samples were divided into 105 calibration set samples and 52 validation set samples. Gas chromatography mass spectrometry (GC-MS) was used as a tool to determine the content of linalool and linalyl acetate in lavender essential oil. Then the matrix was established with the GC-MS raw data of two compounds in combination with the original NIR data. In order to optimize the model, different pretreatment methods were used to preprocess the raw NIR spectral to contrast the spectral filtering effect, after analysizing the quantitative model results of linalool and linalyl acetate, the root mean square error prediction (RMSEP) of orthogonal signal transformation (OSC) was 0.226, 0.558, spectrally, it was the optimum pretreatment method. In addition, forward interval partial least squares (FiPLS) method was used to exclude the wavelength points which has nothing to do with determination composition or present nonlinear correlation, finally 8 spectral intervals totally 160 wavelength points were obtained as the dataset. Combining the data sets which have optimized by OSC-FiPLS with partial least squares (PLS) to establish a rapid quantitative analysis model for determining the content of linalool and linalyl acetate in Xinjiang lavender essential oil, numbers of hidden variables of two

Conjoined lumbosacral nerve roots

International Nuclear Information System (INIS)

Kyoshima, Kazumitsu; Nishiura, Iwao; Koyama, Tsunemaro

1986-01-01

Several kinds of the lumbosacral nerve root anomalies have already been recognized, and the conjoined nerve roots is the most common among them. It does not make symptoms by itself, but if there is a causation of neural entrapment, for example, disc herniation, lateral recessus stenosis, spondylolisthesis, etc., so called ''biradicular syndrome'' should occur. Anomalies of the lumbosacral nerve roots, if not properly recognized, may lead to injury of these nerves during operation of the lumbar spine. Recently, the chance of finding these anomalous roots has been increased more and more with the use of metrizamide myelography and metrizamide CT, because of the improvement of the opacification of nerve roots. We describe the findings of the anomalous roots as revealed by these two methods. They demonstrate two nerve roots running parallel and the asymmetrical wide root sleeve. Under such circumstances, it is important to distinguish the anomalous roots from the normal ventral and dorsal roots. (author)

IAA transport in corn roots includes the root cap

International Nuclear Information System (INIS)

Hasenstein, K.H.

1989-01-01

In earlier reports we concluded that auxin is the growth regulator that controls gravicurvature in roots and that the redistribution of auxin occurs within the root cap. Since other reports did not detect auxin in the root cap, we attempted to confirm the IAA does move through the cap. Agar blocks containing 3 H-IAA were applied to the cut surface of 5 mm long apical segments of primary roots of corn (mo17xB73). After 30 to 120 min radioactivity (RA) of the cap and root tissue was determined. While segments suspended in water-saturated air accumulated very little RA in the cap, application of 0.5 μ1 of dist. water to the cap (=controls) increased RA of the cap dramatically. Application to the cap of 0.5 μ1 of sorbitol or the Ca 2+ chelator EGTA reduced cap RA to 46% and 70% respectively compared to water, without affecting uptake. Control root segments gravireacted faster than non-treated or osmoticum or EGTA treated segments. The data indicate that both the degree of hydration and calcium control the amount of auxin moving through the cap

Exploring the Roots of Contested Public Spaces of Cairo : Using Self-organization as Alternative Lens

NARCIS (Netherlands)

Saleh, Mohamed; Rokem, Jonathan; Boano, Camillo

2017-01-01

For decades, public space as a concept in Egypt has been systematically deprived of its essential symbolic functions. Upon integrating the country into the global model of neoliberalism, the state has adopted public policies on various scales which resulted in a deep-rooted crisis of participation

Comparison between Arabidopsis and Rice for Main Pathways of K(+) and Na(+) Uptake by Roots.

Science.gov (United States)

Nieves-Cordones, Manuel; Martínez, Vicente; Benito, Begoña; Rubio, Francisco

2016-01-01

K(+) is an essential macronutrient for plants. It is acquired by specific uptake systems located in roots. Although the concentrations of K(+) in the soil solution are widely variable, K(+) nutrition is secured by uptake systems that exhibit different affinities for K(+). Two main systems have been described for root K(+) uptake in several species: the high-affinity HAK5-like transporter and the inward-rectifier AKT1-like channel. Other unidentified systems may be also involved in root K(+) uptake, although they only seem to operate when K(+) is not limiting. The use of knock-out lines has allowed demonstrating their role in root K(+) uptake in Arabidopsis and rice. Plant adaptation to the different K(+) supplies relies on the finely tuned regulation of these systems. Low K(+)-induced transcriptional up-regulation of the genes encoding HAK5-like transporters occurs through a signal cascade that includes changes in the membrane potential of root cells and increases in ethylene and reactive oxygen species concentrations. Activation of AKT1 channels occurs through phosphorylation by the CIPK23/CBL1 complex. Recently, activation of the Arabidopsis HAK5 by the same complex has been reported, pointing to CIPK23/CBL as a central regulator of the plant's adaptation to low K(+). Na(+) is not an essential plant nutrient but it may be beneficial for some plants. At low concentrations, Na(+) improves growth, especially under K(+) deficiency. Thus, high-affinity Na(+) uptake systems have been described that belong to the HKT and HAK families of transporters. At high concentrations, typical of saline environments, Na(+) accumulates in plant tissues at high concentrations, producing alterations that include toxicity, water deficit and K(+) deficiency. Data concerning pathways for Na(+) uptake into roots under saline conditions are still scarce, although several possibilities have been proposed. The apoplast is a significant pathway for Na(+) uptake in rice grown under salinity

Comparison between Arabidopsis and Rice for Main Pathways of K+ and Na+ Uptake by Roots

Science.gov (United States)

Nieves-Cordones, Manuel; Martínez, Vicente; Benito, Begoña; Rubio, Francisco

2016-01-01

K+ is an essential macronutrient for plants. It is acquired by specific uptake systems located in roots. Although the concentrations of K+ in the soil solution are widely variable, K+ nutrition is secured by uptake systems that exhibit different affinities for K+. Two main systems have been described for root K+ uptake in several species: the high-affinity HAK5-like transporter and the inward-rectifier AKT1-like channel. Other unidentified systems may be also involved in root K+ uptake, although they only seem to operate when K+ is not limiting. The use of knock-out lines has allowed demonstrating their role in root K+ uptake in Arabidopsis and rice. Plant adaptation to the different K+ supplies relies on the finely tuned regulation of these systems. Low K+-induced transcriptional up-regulation of the genes encoding HAK5-like transporters occurs through a signal cascade that includes changes in the membrane potential of root cells and increases in ethylene and reactive oxygen species concentrations. Activation of AKT1 channels occurs through phosphorylation by the CIPK23/CBL1 complex. Recently, activation of the Arabidopsis HAK5 by the same complex has been reported, pointing to CIPK23/CBL as a central regulator of the plant’s adaptation to low K+. Na+ is not an essential plant nutrient but it may be beneficial for some plants. At low concentrations, Na+ improves growth, especially under K+ deficiency. Thus, high-affinity Na+ uptake systems have been described that belong to the HKT and HAK families of transporters. At high concentrations, typical of saline environments, Na+ accumulates in plant tissues at high concentrations, producing alterations that include toxicity, water deficit and K+ deficiency. Data concerning pathways for Na+ uptake into roots under saline conditions are still scarce, although several possibilities have been proposed. The apoplast is a significant pathway for Na+ uptake in rice grown under salinity conditions, but in other plant species

Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays)

OpenAIRE

Chimungu, Joseph G.; Loades, Kenneth W.; Lynch, Jonathan P.

2015-01-01

The ability of roots to penetrate hard soil is important for crop productivity but specific root phenes contributing to this ability are poorly understood. Root penetrability and biomechanical properties are likely to vary in the root system dependent on anatomical structure. No information is available to date on the influence of root anatomical phenes on root penetrability and biomechanics. Root penetration ability was evaluated using a wax layer system. Root tensile and bending strength we...

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

Science.gov (United States)

Rellán-Álvarez, Rubén; Lobet, Guillaume; Lindner, Heike; Pradier, Pierre-Luc; Sebastian, Jose; Yee, Muh-Ching; Geng, Yu; Trontin, Charlotte; LaRue, Therese; Schrager-Lavelle, Amanda; Haney, Cara H; Nieu, Rita; Maloof, Julin; Vogel, John P; Dinneny, José R

2015-01-01

Root systems develop different root types that individually sense cues from their local environment and integrate this information with systemic signals. This complex multi-dimensional amalgam of inputs enables continuous adjustment of root growth rates, direction, and metabolic activity that define a dynamic physical network. Current methods for analyzing root biology balance physiological relevance with imaging capability. To bridge this divide, we developed an integrated-imaging system called Growth and Luminescence Observatory for Roots (GLO-Roots) that uses luminescence-based reporters to enable studies of root architecture and gene expression patterns in soil-grown, light-shielded roots. We have developed image analysis algorithms that allow the spatial integration of soil properties, gene expression, and root system architecture traits. We propose GLO-Roots as a system that has great utility in presenting environmental stimuli to roots in ways that evoke natural adaptive responses and in providing tools for studying the multi-dimensional nature of such processes. DOI: http://dx.doi.org/10.7554/eLife.07597.001 PMID:26287479

Mandibular second premolar with three canals: Re-treatment of a case with unusual root canal anatomy

Directory of Open Access Journals (Sweden)

Niranjan Desai

2011-01-01

Full Text Available A thorough knowledge of root canal anatomy along with the anatomical variations that may be present is essential for success of endodontic therapy. Unusual presentations in the number of the roots or the canals should be expected in every tooth. Mandibular second premolars are thought of as having a single root and canal. Studies have stated that the prevalence of three canals with three orifices in this tooth is 0.4%. The mandibular second premolar is particularly difficult to treat owing to the fact that a wide variation in the number, location and curvature of the roots and canals exist. Added to this is the fact that the access opening is restricted and location of the lingually placed orifices is difficult. This case report details the re-treatment of a mandibular second premolar with three canals and three separate orifices using the surgical microscope.

Root Canal Irrigation: Chemical Agents and Plant Extracts Against Enterococcus faecalis

Science.gov (United States)

Borzini, Letizia; Condò, Roberta; De Dominicis, Paolo; Casaglia, Adriano; Cerroni, Loredana

2016-01-01

Background: There are various microorganisms related to intra and extra-radicular infections and many of these are involved in persistent infections. Bacterial elimination from the root canal is achieved by means of the mechanical action of instruments and irrigation as well as the antibacterial effects of the irrigating solutions. Enterococcus faecalis can frequently be isolated from root canals in cases of failed root canal treatments. Antimicrobial agents have often been developed and optimized for their activity against endodontic bacteria. An ideal root canal irrigant should be biocompatible, because of its close contact with the periodontal tissues during endodontic treatment. Sodium hypoclorite (NaOCl) is one of the most widely recommended and used endodontic irrigants but it is highly toxic to periapical tissues. Objectives: To analyze the literature on the chemotherapeutic agent and plant extracts studied as root canal irrigants. In particularly, the study is focused on their effect on Enterococcus faecalis. Method: Literature search was performed electronically in PubMed (PubMed Central, MEDLINE) for articles published in English from 1982 to April 2015. The searched keywords were “endodontic irrigants” and “Enterococcus faecalis” and “essential oil” and “plant extracts”. Results: Many of the studied chemotherapeutic agents and plant extracts have shown promising results in vitro. Conclusion: Some of the considered phytotherapic substances, could be a potential alternative to NaOCl for the biomechanical treatment of the endodontic space. PMID:28217184

ROOT.NET: Using ROOT from .NET languages like C# and F#

Science.gov (United States)

Watts, G.

2012-12-01

ROOT.NET provides an interface between Microsoft's Common Language Runtime (CLR) and .NET technology and the ubiquitous particle physics analysis tool, ROOT. ROOT.NET automatically generates a series of efficient wrappers around the ROOT API. Unlike pyROOT, these wrappers are statically typed and so are highly efficient as compared to the Python wrappers. The connection to .NET means that one gains access to the full series of languages developed for the CLR including functional languages like F# (based on OCaml). Many features that make ROOT objects work well in the .NET world are added (properties, IEnumerable interface, LINQ compatibility, etc.). Dynamic languages based on the CLR can be used as well, of course (Python, for example). Additionally it is now possible to access ROOT objects that are unknown to the translation tool. This poster will describe the techniques used to effect this translation, along with performance comparisons, and examples. All described source code is posted on the open source site CodePlex.

ROOT.NET: Using ROOT from .NET languages like C and F

International Nuclear Information System (INIS)

Watts, G

2012-01-01

ROOT.NET provides an interface between Microsoft's Common Language Runtime (CLR) and .NET technology and the ubiquitous particle physics analysis tool, ROOT. ROOT.NET automatically generates a series of efficient wrappers around the ROOT API. Unlike pyROOT, these wrappers are statically typed and so are highly efficient as compared to the Python wrappers. The connection to .NET means that one gains access to the full series of languages developed for the CLR including functional languages like F (based on OCaml). Many features that make ROOT objects work well in the .NET world are added (properties, IEnumerable interface, LINQ compatibility, etc.). Dynamic languages based on the CLR can be used as well, of course (Python, for example). Additionally it is now possible to access ROOT objects that are unknown to the translation tool. This poster will describe the techniques used to effect this translation, along with performance comparisons, and examples. All described source code is posted on the open source site CodePlex.

Correlation of Vitamin D status and orthodontic-induced external apical root resorption.

Science.gov (United States)

Tehranchi, Azita; Sadighnia, Azin; Younessian, Farnaz; Abdi, Amir H; Shirvani, Armin

2017-01-01

Adequate Vitamin D is essential for dental and skeletal health in children and adult. The purpose of this study was to assess the correlation of serum Vitamin D level with external-induced apical root resorption (EARR) following fixed orthodontic treatment. In this cross-sectional study, the prevalence of Vitamin D deficiency (defined by25-hydroxyvitamin-D) was determined in 34 patients (23.5% male; age range 12-23 years; mean age 16.63 ± 2.84) treated with fixed orthodontic treatment. Root resorption of four maxillary incisors was measured using before and after periapical radiographs (136 measured teeth) by means of a design-to-purpose software to optimize data collection. Teeth with a maximum percentage of root resorption (%EARR) were indicated as representative root resorption for each patient. A multiple linear regression model and Pearson correlation coefficient were used to assess the association of Vitamin D status and observed EARR. P 0.05). This study suggests that Vitamin D level is not among the clinical variables that are potential contributors for EARR. The prevalence of Vitamin D deficiency does not differ in patients with higher EARR. These data suggest the possibility that Vitamin D insufficiency may not contribute to the development of more apical root resorption although this remains to be confirmed by further longitudinal cohort studies.

Locally Finite Root Supersystems

OpenAIRE

Yousofzadeh, Malihe

2013-01-01

We introduce the notion of locally finite root supersystems as a generalization of both locally finite root systems and generalized root systems. We classify irreducible locally finite root supersystems.

Hormonal control of root development on epiphyllous plantlets of Bryophyllum (Kalanchoe) marnierianum: role of auxin and ethylene.

Science.gov (United States)

Kulka, Richard G

2008-01-01

Epiphyllous plantlets develop on leaves of Bryophyllum marnierianum when they are excised from the plant. Shortly after leaf excision, plantlet shoots develop from primordia located near the leaf margin. After the shoots have enlarged for several days, roots appear at their base. In this investigation, factors regulating plantlet root development were studied. The auxin transport inhibitor 2,3,5-triiodobenzoic acid (TIBA) abolished root formation without markedly affecting shoot growth. This suggested that auxin transport from the plantlet shoot induces root development. Excision of plantlet apical buds inhibits root development. Application of indole-3-acetic acid (IAA) in lanolin at the site of the apical buds restores root outgrowth. Naphthalene acetic acid (NAA), a synthetic auxin, reverses TIBA inhibition of plantlet root emergence on leaf explants. Both of these observations support the hypothesis that auxin, produced by the plantlet, induces root development. Exogenous ethylene causes precocious root development several days before that of a control without hormone. Ethylene treatment cannot bypass the TIBA block of root formation. Therefore, ethylene does not act downstream of auxin in root induction. However, ethylene amplifies the effects of low concentrations of NAA, which in the absence of ethylene do not induce roots. Ag(2)S(2)O(3), an ethylene blocker, and CoCl(2), an ethylene synthesis inhibitor, do not abolish plantlet root development. It is therefore unlikely that ethylene is essential for root formation. Taken together, the experiments suggest that roots develop when auxin transport from the shoot reaches a certain threshold. Ethylene may augment this effect by lowering the threshold and may come into play when the parent leaf senesces.

PIXE-based quantification of health-proactive trace elements in genetically transformed roots of a multi-medicinal plant, Sida acuta Burm.f

International Nuclear Information System (INIS)

Somanatha Jena; Lopamudra Sahu; Chand, P.K.; Ray, D.K.; Mishra, S.K.

2015-01-01

Inorganic element composition of genetically transformed hairy root cultures (HRCs) of a medicinal plant, Sida acuta was determined using PIXE technique. HRCs had a higher accumulation of pro-health trace elements compared to natural roots. It was estimated that < 160 g d.wt. of a selected rhizoclone could suffice to provide nearly all tested essential elements catering to per diem requirement of the human body. The ideal multi-elemental profile ushers a new possibility of integrating hairy root extracts in modern therapeutics ('rhizotherapy') as complementary medicine or a dietary nutraceutical supplement. (author)

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster

OpenAIRE

Danjon, Frédéric; Caplan, Joshua S.; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account ...

Roots & Hollers

OpenAIRE

Kollman, Patrick L; Gorman, Thomas A

2011-01-01

Roots & Hollers, 2011 A documentary by Thomas Gorman & Patrick Kollman Master’s Project Abstract: Roots & Hollers uncovers the wild American ginseng trade, revealing a unique intersection between Asia and rural America. Legendary in Asia for its healing powers, ginseng helps sustain the livelihoods of thousands in Appalachia. A single root can sell for thousands of dollars at auction. Shot on-location in the mountains of Kentucky and West Virginia, this student doc...

Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots

Science.gov (United States)

Passot, Sixtine; Gnacko, Fatoumata; Moukouanga, Daniel; Lucas, Mikaël; Guyomarc’h, Soazig; Ortega, Beatriz Moreno; Atkinson, Jonathan A.; Belko, Marème N.; Bennett, Malcolm J.; Gantet, Pascal; Wells, Darren M.; Guédon, Yann; Vigouroux, Yves; Verdeil, Jean-Luc; Muller, Bertrand; Laplaze, Laurent

2016-01-01

Pearl millet plays an important role for food security in arid regions of Africa and India. Nevertheless, it is considered an orphan crop as it lags far behind other cereals in terms of genetic improvement efforts. Breeding pearl millet varieties with improved root traits promises to deliver benefits in water and nutrient acquisition. Here, we characterize early pearl millet root system development using several different root phenotyping approaches that include rhizotrons and microCT. We report that early stage pearl millet root system development is characterized by a fast growing primary root that quickly colonizes deeper soil horizons. We also describe root anatomical studies that revealed three distinct types of lateral roots that form on both primary roots and crown roots. Finally, we detected significant variation for two root architectural traits, primary root lenght and lateral root density, in pearl millet inbred lines. This study provides the basis for subsequent genetic experiments to identify loci associated with interesting early root development traits in this important cereal. PMID:27379124

Hypocotyl adventitious root organogenesis differs from lateral root development.

Science.gov (United States)

Verstraeten, Inge; Schotte, Sébastien; Geelen, Danny

2014-01-01

Wound-induced adventitious root (AR) formation is a requirement for plant survival upon root damage inflicted by pathogen attack, but also during the regeneration of plant stem cuttings for clonal propagation of elite plant varieties. Yet, adventitious rooting also takes place without wounding. This happens for example in etiolated Arabidopsis thaliana hypocotyls, in which AR initiate upon de-etiolation or in tomato seedlings, in which AR initiate upon flooding or high water availability. In the hypocotyl AR originate from a cell layer reminiscent to the pericycle in the primary root (PR) and the initiated AR share histological and developmental characteristics with lateral roots (LRs). In contrast to the PR however, the hypocotyl is a determinate structure with an established final number of cells. This points to differences between the induction of hypocotyl AR and LR on the PR, as the latter grows indeterminately. The induction of AR on the hypocotyl takes place in environmental conditions that differ from those that control LR formation. Hence, AR formation depends on differentially regulated gene products. Similarly to AR induction in stem cuttings, the capacity to induce hypocotyl AR is genotype-dependent and the plant growth regulator auxin is a key regulator controlling the rooting response. The hormones cytokinins, ethylene, jasmonic acid, and strigolactones in general reduce the root-inducing capacity. The involvement of this many regulators indicates that a tight control and fine-tuning of the initiation and emergence of AR exists. Recently, several genetic factors, specific to hypocotyl adventitious rooting in A. thaliana, have been uncovered. These factors reveal a dedicated signaling network that drives AR formation in the Arabidopsis hypocotyl. Here we provide an overview of the environmental and genetic factors controlling hypocotyl-born AR and we summarize how AR formation and the regulating factors of this organogenesis are distinct from LR

Hypocotyl adventitious root organogenesis differs from lateral root development

Directory of Open Access Journals (Sweden)

Inge eVerstraeten

2014-09-01

Full Text Available Wound-induced adventitious root (AR formation is a requirement for plant survival upon root damage inflicted by pathogen attack, but also during the regeneration of plant stem cuttings for clonal propagation of elite plant varieties. Yet, adventitious rooting also takes place without wounding. This happens for example in etiolated Arabidopsis thaliana hypocotyls, in which AR initiate upon de-etiolation or in tomato seedlings, in which AR initiate upon flooding or high water availability. In the hypocotyl AR originate from a cell layer reminiscent to the pericycle in the primary root (PR and the initiated AR share histological and developmental characteristics with lateral roots (LR. In contrast to the PR however, the hypocotyl is a determinate structure with an established final number of cells. This points to differences between the induction of hypocotyl AR and LR on the PR, as the latter grows indeterminately. The induction of AR on the hypocotyl takes place in environmental conditions that differ from those that control LR formation. Hence, AR formation depends on differentially regulated gene products. Similarly to AR induction in stem cuttings, the capacity to induce hypocotyl AR is genotype-dependent and the plant growth regulator auxin is a key regulator controlling the rooting response. The hormones cytokinins, ethylene, jasmonic acid and strigolactones in general reduce the root-inducing capacity. The involvement of this many regulators indicates that a tight control and fine-tuning of the initiation and emergence of AR exists. Recently, several genetic factors, specific to hypocotyl adventitious rooting in Arabidopsis thaliana, have been uncovered. These factors reveal a dedicated signaling network that drives AR formation in the Arabidopsis hypocotyl. Here we provide an overview of the environmental and genetic factors controlling hypocotyl-born AR and we summarize how AR formation and the regulating factors of this organogenesis are

ROOT I/O in Javascript - Reading ROOT files in a browser

CERN Multimedia

CERN. Geneva

2012-01-01

A JavaScript version of the ROOT I/O subsystem is being developed, in order to be able to browse (inspect) ROOT files in a platform independent way. This allows the content of ROOT files to be displayed in most web browsers, without having to install ROOT or any other software on the server or on the client. This gives a direct access to ROOT files from new (e.g. portable) devices in a light way. It will be possible to display simple graphical objects such as histograms and graphs (TH1, TH2, TH3, TProfile, TGraph, ...). The rendering will first be done with an external JavaScript graphic library, before investigating a way to produce graphics closer to what ROOT supports on other platforms (X11, Windows).

Experimentally reduced root–microbe interactions reveal limited plasticity in functional root traits in Acer and Quercus

Science.gov (United States)

Lee, Mei-Ho; Comas, Louise H.; Callahan, Hilary S.

2014-01-01

Background and Aims Interactions between roots and soil microbes are critical components of below-ground ecology. It is essential to quantify the magnitude of root trait variation both among and within species, including variation due to plasticity. In addition to contextualizing the magnitude of plasticity relative to differences between species, studies of plasticity can ascertain if plasticity is predictable and whether an environmental factor elicits changes in traits that are functionally advantageous. Methods To compare functional traits and trait plasticities in fine root tissues with natural and reduced levels of colonization by microbial symbionts, trimmed and surface-sterilized root segments of 2-year-old Acer rubrum and Quercus rubra seedlings were manipulated. Segments were then replanted into satellite pots filled with control or heat-treated soil, both originally derived from a natural forest. Mycorrhizal colonization was near zero in roots grown in heat-treated soil; roots grown in control soil matched the higher colonization levels observed in unmanipulated root samples collected from field locations. Key Results Between-treatment comparisons revealed negligible plasticity for root diameter, branching intensity and nitrogen concentration across both species. Roots from treated soils had decreased tissue density (approx. 10–20 %) and increased specific root length (approx. 10–30 %). In contrast, species differences were significant and greater than treatment effects in traits other than tissue density. Interspecific trait differences were also significant in field samples, which generally resembled greenhouse samples. Conclusions The combination of experimental and field approaches was useful for contextualizing trait plasticity in comparison with inter- and intra-specific trait variation. Findings that root traits are largely species dependent, with the exception of root tissue density, are discussed in the context of current literature on root

Anatomic investigation of the lumbosacral nerve roots and dorsal root ganglia by MRI

International Nuclear Information System (INIS)

Hasegawa, Toru; Fuse, Kenzo; Mikawa, Yoshihiro; Watanabe, Ryo

1995-01-01

The morphology of the lumbosacral nerve roots and dorsal root ganglia (DRG) was examined by using magnetic resonance imaging (MRI) in 11 healthy male volunteers aged 20-40 years. One hundred and twenty-three nerve roots (15 at the L1 level, 22 each at the L2-L5 levels, and 20 at the S1 level) were examined in terms of the position and angle of the bifurcation of the nerve roots, length of the nerve root, and the position and width of DRG. The nerve roots at the lower levels showed more cephalad position and smaller angle of bifurcation on MRI. The distance from the bifurcation of nerve roots to the cephalad edge of DRG was significantly longer in the upper root levels and was significantly shorter in the L5 roots than the S1 roots. The positions of DRG at the S1 level tended to become cephalad. DRG that was positioned toward more caudal direction was larger and more elliptic. MRI provided useful information concerning morphology and anatomical position of nerve roots and DRG, thereby allowing accurate diagnosis and the determination of surgical indications. (N.K.)

Genetic control of plasticity in root morphology and anatomy of rice in response to water deficit

NARCIS (Netherlands)

Kadam, Niteen N.; Tamilselvan, Anandhan; Lawas, Lovely M.F.; Quinones, Cherryl; Bahuguna, Rajeev N.; Thomson, Michael J.; Dingkuhn, Michael; Muthurajan, Raveendran; Struik, Paul C.; Yin, Xinyou; Jagadish, Krishna S.V.

2017-01-01

Elucidating the genetic control of rooting behavior under water-deficit stress is essential to breed climate-robust rice (Oryza sativa) cultivars. Using a diverse panel of 274 indica genotypes grown under control and water-deficit conditions during vegetative growth, we phenotyped 35 traits, mostly

Submergence of Roots for Alveolar Bone Preservation. I. Endodontically Treated Roots.

Science.gov (United States)

1977-05-10

With Endodontic Submerged Roots Scale 0 1 2 3 Periapical 15 0 1 0 Pericoronal 7 3 3 3 (3 cysts ) = 1 _ _ _ _ _ _ _ _ _ = REFERENCES 1. Lam, R.: Contour...with coronal portions of the roots. These epithe lial-lined cysts prevented the formation of osteo- cementum over the coronal surface . In this study...the endodontically treated roots appeared to be primarily a response to the excess root cana l sealer that was expressed coronally and periapically

Influence of temperature and rooting-promoter on the formation of root-primodia and on the rooting of chrysanthemum cuttings under storage

International Nuclear Information System (INIS)

Nishio, J.; Fukuda, M.

1998-01-01

In order to promote rooting for direct planting cuttings in a lighting cultivation of chrysanthemum, we clarified the effects of light, temperature and term of storage of the cuttings, and analyzed ways of using rooting promoters as a pre-treatment of cuttings for root-primodia formation and rooting. Light as a pre-treatment had little effect, so it seemed to be not necessary for the formation of root primodia. The formation of the root-primodia was most hastened at 25 degrees C; inversely, it was slowed down at low temperatures, that is, the root-primodia were formed in four days at 25 degrees C, five days at 20 degrees C, and seven days at 15 degrees C. With the use of rooting promoters as a pre-treatment for the rooting of cuttings, the root-primodia were formed faster when the whole of cuttings were dipped in 40 mg/L solution of indelebutyric acid (IBA) than when the base of cuttings were dipped or sprayed 400 mg/L solution of IBA. It was appropriate that cuttings were dipped in IBA then put in in plastic-pots (7.5cm) vertically, packed in polyethylene-bags and stored in a corrugated carton box

Chemical composition and biological activities of Tunisian Cupressus arizonica Greene essential oils.

Science.gov (United States)

Ismail, Amri; Mancini, Emilia; De Martino, Laura; Hamrouni, Lamia; Hanana, Mohsen; Jamoussi, Bassem; Gargouri, Samia; Scognamiglio, Mariarosa; De Feo, Vincenzo

2014-01-01

The chemical composition of the essential oils obtained by hydrodistillation of leaves, stems, and female cones of Cupressus arizonica Greene, grown in Tunisia, was studied by GC-FID and GC/MS analyses. Altogether, 62 compounds were identified, 62 in the leaf oil, 19 in the cone oil, and 24 in the stem oil. The cone and stem oils were mainly composed by monoterpene hydrocarbons (96.6 and 85.2%, resp.). In the leaf oil, the total sesquiterpene fraction constituted 36.1% and that of the monoterpene hydrocarbons 33.8% of the total oil composition. The three oils were evaluated for their in vitro herbicidal activity by determining their influence on the germination and the shoot and root growth of the four weed species Sinapis arvensis L., Lolium rigidum Gaudin, Trifolium campestre Schreb., and Phalaris canariensis L. At the highest doses tested (0.8 and 1.0 mg/ml), the leaf essential oil inhibited either totally or almost completely the seed germination and the shoot and root growth of S. arvensis and T. campestre. The oils were also tested for their antifungal activity; however, their effects on the fungal growth were statistically not significant. Copyright © 2014 Verlag Helvetica Chimica Acta AG, Zürich.

Resistance to compression of weakened roots subjected to different root reconstruction protocols

Directory of Open Access Journals (Sweden)

Lucas Villaça Zogheib

2011-12-01

Full Text Available OBJECTIVE: This study evaluated, in vitro, the fracture resistance of human non-vital teeth restored with different reconstruction protocols. MATERIAL AND METHODS: Forty human anterior roots of similar shape and dimensions were assigned to four groups (n=10, according to the root reconstruction protocol: Group I (control: non-weakened roots with glass fiber post; Group II: roots with composite resin by incremental technique and glass fiber post; Group III: roots with accessory glass fiber posts and glass fiber post; and Group IV: roots with anatomic glass fiber post technique. Following post cementation and core reconstruction, the roots were embedded in chemically activated acrylic resin and submitted to fracture resistance testing, with a compressive load at an angle of 45º in relation to the long axis of the root at a speed of 0.5 mm/min until fracture. All data were statistically analyzed with bilateral Dunnett's test (α=0.05. RESULTS: Group I presented higher mean values of fracture resistance when compared with the three experimental groups, which, in turn, presented similar resistance to fracture among each other. None of the techniques of root reconstruction with intraradicular posts improved root strength, and the incremental technique was suggested as being the most recommendable, since the type of fracture that occurred allowed the remaining dental structure to be repaired. CONCLUSION: The results of this in vitro study suggest that the healthy remaining radicular dentin is more important to increase fracture resistance than the root reconstruction protocol.

Living roots effect on 14C-labelled root litter decomposition

International Nuclear Information System (INIS)

Billes, G.; Bottner, P.

1981-01-01

Wheat was 14 C-labelled by cultivation on soil in pots, from seedling to maturity, in a chamber with constant CO 2 and 14 CO 2 levels. The 14 C-distribution was constant amongst the aerial parts, the roots and the soil in the whole pots. After cutting the plant tops, the pots were dried without disturbing the soil and root system. The pots were then incubated under controlled humidity and temperature conditions for 62 days. In the same time a second wheat cultivation was grown on one half of the pots in normal atmosphere without plant cultivation. The purpose of the work is to study the effect of living roots on decomposition of the former 14 C labelled roots litter. The CO 2 and the 14 CO 2 released from the soil were continuously measured. On incubation days 0, 18, 33 and 62, the remaining litter was separated from soil, and the organic matter was fractionated by repeated hydrolysis and NaOH extraction. Root litter disappeared faster when living roots were present than in bare soil. The accumulation and mineralization rates of humified components in soil followed two stages. While the roots of second wheat cultivation grew actively (until earing), the strong acid hydrolysable components accumulated in larger amount than in the case of bare soil. After earing, while roots activity was depressed, these components were partly mineralized and the 14 CO 2 release was then higher with plants than with bare soil. The humification and mineralization rate were related with living plant phenology stages. (orig.)

Gel-free/label-free proteomic analysis of root tip of soybean over time under flooding and drought stresses.

Science.gov (United States)

Wang, Xin; Oh, MyeongWon; Sakata, Katsumi; Komatsu, Setsuko

2016-01-01

Growth in the early stage of soybean is markedly inhibited under flooding and drought stresses. To explore the responsive mechanisms of soybean, temporal protein profiles of root tip under flooding and drought stresses were analyzed using gel-free/label-free proteomic technique. Root tip was analyzed because it was the most sensitive organ against flooding, and it was beneficial to root penetration under drought. UDP glucose: glycoprotein glucosyltransferase was decreased and increased in soybean root under flooding and drought, respectively. Temporal protein profiles indicated that fermentation and protein synthesis/degradation were essential in root tip under flooding and drought, respectively. In silico protein-protein interaction analysis revealed that the inductive and suppressive interactions between S-adenosylmethionine synthetase family protein and B-S glucosidase 44 under flooding and drought, respectively, which are related to carbohydrate metabolism. Furthermore, biotin/lipoyl attachment domain containing protein and Class II aminoacyl tRNA/biotin synthetases superfamily protein were repressed in the root tip during time-course stresses. These results suggest that biotin and biotinylation might be involved in energy management to cope with flooding and drought in early stage of soybean-root tip. Copyright © 2015 Elsevier B.V. All rights reserved.

Evaluation of essential oils in health and physiological quality of Schinus molle seeds and seedlings

Directory of Open Access Journals (Sweden)

Kamila Cardoso Pereira

2016-03-01

Full Text Available The objective was to evaluate the effect of Mentha piperita, Cymbopogon nardus and Eucalyptus globules essential oils, in sanitary and physiological quality of Schinus molle L. seeds and seedlings. The seeds were treated with essential oils at concentrations of 10%, on 1 μL g-1, 20%, on 2 μL g-1, 30% , on 3 μL g-1 and control. After treatments, seeds were evaluated by sanity test, using filter paper method (“blotter test” and by germination test, where the seeds were placed between vermiculite substrate. For counts, sprouted and dead seeds were considered. Shoot length, root, total height and stem diameter were measured for seedlings evaluation. The use of citronella and mint essential oils reduced the incidence of different pathogens in S. molle seeds. Mint essential oil at 20% and 30% were effective to promote seeds germination. Eucalyptus essential oil in any concentration was efficient to increase seedlings growth.

A molecular framework for the inhibition of Arabidopsis root growth in response to boron toxicity.

Science.gov (United States)

Aquea, Felipe; Federici, Fernan; Moscoso, Cristian; Vega, Andrea; Jullian, Pastor; Haseloff, Jim; Arce-Johnson, Patricio

2012-04-01

Boron is an essential micronutrient for plants and is taken up in the form of boric acid (BA). Despite this, a high BA concentration is toxic for the plants, inhibiting root growth and is thus a significant problem in semi-arid areas in the world. In this work, we report the molecular basis for the inhibition of root growth caused by boron. We show that application of BA reduces the size of root meristems, correlating with the inhibition of root growth. The decrease in meristem size is caused by a reduction of cell division. Mitotic cell number significantly decreases and the expression level of key core cell cycle regulators is modulated. The modulation of the cell cycle does not appear to act through cytokinin and auxin signalling. A global expression analysis reveals that boron toxicity induces the expression of genes related with abscisic acid (ABA) signalling, ABA response and cell wall modifications, and represses genes that code for water transporters. These results suggest that boron toxicity produces a reduction of water and BA uptake, triggering a hydric stress response that produces root growth inhibition. © 2011 Blackwell Publishing Ltd.

The impact of solarisation integrated with plant bio-fermentation on root knot nematodes

International Nuclear Information System (INIS)

Ibrahim, S. K.; Traboulsi, A. F.

2009-01-01

The impact of different freshly/dried chopped medicinal or aromatic plant materials as an organic amendment in pot cultures, as well as integrated with solarisation under greenhouse conditions on the root knot nematodes population was evaluated. Results indicated that application of solarisation alone gave good control (72%) but when integrated with different plant materials, the control level increased to 95% with Allium sativum and 90% with Mentha microphylla and slightly less with other plant materials which ranged from75 to 80%. The results of pot experiments revealed that the most significant effect on the number of nematodes was achieved with Tagetes patula followed by Pimpinella anisum, Melia azadirach and Origanium syriacum reaching 0.0, 1.2, 1.2 and 2.5/g of roots, respectively. Total control was obtained with Allium sativum. Origanium syriacum contained the highest amount of essential oil (6%). Results obtained indicated that integrated approach using solarisation combined with plant materials could be the best alternative control for the root-knot nematodes. (author)

Root resorption

DEFF Research Database (Denmark)

Kjaer, Inger

2014-01-01

Introduction: This paper summarizes the different conditions, which have a well-known influence on the resorption of tooth roots, exemplified by trauma and orthodontic treatment. The concept of the paper is to summarize and explain symptoms and signs of importance for avoiding resorption during...... orthodontic treatment. The Hypothesis: The hypothesis in this paper is that three different tissue layers covering the root in the so-called periroot sheet can explain signs and symptoms of importance for avoiding root resorption during orthodontic treatment. These different tissue layers are; outermost...... processes provoked by trauma and orthodontic pressure. Inflammatory reactions are followed by resorptive processes in the periroot sheet and along the root surface. Evaluation of the Hypothesis: Different morphologies in the dentition are signs of abnormal epithelium or an abnormal mesodermal layer. It has...

In vitro production of secondary metabolite using Atropa komarovii Bline&Shal (Solanaceae hairy root culture via Agrobacterium rhizogenes ATCC15834

Directory of Open Access Journals (Sweden)

Ofelia Banihashemi

2017-07-01

Full Text Available Background & Aim:A new sustainable tissue-based system is presented by plant hairy roots, preserving all of the several specialized types of cell with critical roles in allowing bioactive secondary molecules to be synthesized more consistently as usual. The system is also essential for studying the production of alkaloid in culture. Experimental: The Atropa komarovii leaves were wounded and infected with soil gram-negative bacterium Agrobacterium rhizogenes ATCC15834. After three weeks, the transformation roots and control roots without infection, appeared, and for confirming that T-DNA Ri plasmid fragments were transformed and integrated to plant genome, the rolB gene region, was amplified using PCR. HPLC method was then used for assaying how two tropane alkaloids such as atropine (hyosciamine and scopolamine (hyoscine were produced in hairy roots,control roots, leaves and roots of plantlet. Results: The data indicated that diagnostic 500bp rol B product amplification was exhibited to be present by all the transformed hairy roots. Scopolamine content in hairy roots was considerably greater than that in control roots but greatest (Hyoscyamine atropine content was observed in control roots. Analysis of DW, FW and root length showed that fresh and dry root weight increased in hairy roots compared with that in non transformed root. Recommended applications/industries: The present study demonstrated that secondary metabolite production using medicinal plants concerns many researchers worldwide today and hairy root culture is a useful method for producing tropane alkaloids in solanaceae.

Measuring and Modeling Root Distribution and Root Reinforcement in Forested Slopes for Slope Stability Calculations

Science.gov (United States)

Cohen, D.; Giadrossich, F.; Schwarz, M.; Vergani, C.

2016-12-01

Roots provide mechanical anchorage and reinforcement of soils on slopes. Roots also modify soil hydrological properties (soil moisture content, pore-water pressure, preferential flow paths) via subsurface flow path associated with root architecture, root density, and root-size distribution. Interactions of root-soil mechanical and hydrological processes are an important control of shallow landslide initiation during rainfall events and slope stability. Knowledge of root-distribution and root strength are key components to estimate slope stability in vegetated slopes and for the management of protection forest in steep mountainous area. We present data that show the importance of measuring root strength directly in the field and present methods for these measurements. These data indicate that the tensile force mobilized in roots depends on root elongation (a function of soil displacement), root size, and on whether roots break in tension of slip out of the soil. Measurements indicate that large lateral roots that cross tension cracks at the scarp are important for slope stability calculations owing to their large tensional resistance. These roots are often overlooked and when included, their strength is overestimated because extrapolated from measurements on small roots. We present planned field experiments that will measure directly the force held by roots of different sizes during the triggering of a shallow landslide by rainfall. These field data are then used in a model of root reinforcement based on fiber-bundle concepts that span different spacial scales, from a single root to the stand scale, and different time scales, from timber harvest to root decay. This model computes the strength of root bundles in tension and in compression and their effect on soil strength. Up-scaled to the stand the model yields the distribution of root reinforcement as a function of tree density, distance from tree, tree species and age with the objective of providing quantitative

Time-dependent antibacterial effects of Aloe vera and Zataria multiflora plant essential oils compared to calcium hydroxide in teeth infected with Enterococcus faecalis.

Science.gov (United States)

Abbaszadegan, Abbas; Sahebi, Safoora; Gholami, Ahmad; Delroba, Alireza; Kiani, Amin; Iraji, Aida; Abbott, Paul Vincent

2016-02-01

In the present in vitro study, we investigated the time-related antimicrobial efficacy of Aloe vera and Zataria multiflora (Z. multiflora) plant essential oils compared to calcium hydroxide ([Ca[OH]2 ) to eliminate Enterococcus faecalis (E. faecalis) from root canals. A new strain of E. faecalis (Enterococcus spp. AGH04) was isolated from a previously root-filled tooth with persistent apical periodontitis. The 16S rRNA sequence was analyzed and deposited in GeneBank under accession number KF465681. A total of 108 extracted human single-rooted teeth were contaminated with this bacterial strain and treated with Aloe vera essential oil, Z. multiflora essential oil, and Ca(OH)2 for 1, 7, and 14 days. Gas chromatography-mass spectrometry (GC-MS) was used to determine the chemical composition of the oils. The percentage reduction from initial c.f.u./mL counts were calculated and analyzed. Carvacrol, thymol, and linalool were the main constituents of both essential oils. The c.f.u./mL count reductions significantly increased for all three medicaments when the contact time was extended. A statistically-significant difference was observed between the medicaments after 1 and 7 days, but there was no significant difference after 14 days. Both medicinal herbs showed equal antimicrobial efficiency against E. faecalis, comparable to Ca(OH)2 for the prolonged contact time of 14 days. © 2014 Wiley Publishing Asia Pty Ltd.

GC-MS Analysis of Insecticidal Essential Oil of Aerial Parts of Echinops latifolius Tausch

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Xin Chao Liu

2013-01-01

Full Text Available The roots of Echinops latifolius Tausch (Asteraceae have been used in the traditional medicine. However, no report on chemical composition and insecticidal activities of the essential oil of this plant exists. The aim of this research was to determine chemical composition and insecticidal activities of the essential oil of E. latifolius aerial parts against maize weevils (Sitophilus zeamais Motschulsky for the first time. Essential oil of E. latifolius aerial parts at flowering stage was obtained by hydrodistillation and analyzed by gas chromatography-mass spectrometry (GC-MS. A total of 35 components of the essential oil of E. latifolius aerial parts were identified. The major compounds in the essential oil were 1,8-cineole (19.63%, (Z-β-ocimene (18.44%, and β-pinene (15.56% followed by β-myrcene (4.75% and carvone (4.39%. The essential oil of E. latifolius possessed contact toxicity against S. zeamais with an LD50 value of 36.40 µg/adult. The essential oil also exhibited fumigant toxicity against S. zeamais with an LC50 value of 9.98 mg/L. The study indicates that the essential oil of E. latifolius aerial parts has a potential for development into a natural insecticide/fumigant for control of insects in stored grains.

Rooting depth and root depth distribution of Trifolium repens × T. uniflorum interspecific hybrids.

Science.gov (United States)

Nichols, S N; Hofmann, R W; Williams, W M; van Koten, C

2016-05-20

Traits related to root depth distribution were examined in Trifolium repens × T. uniflorum backcross 1 (BC 1 ) hybrids to determine whether root characteristics of white clover could be improved by interspecific hybridization. Two white clover cultivars, two T. uniflorum accessions and two BC 1 populations were grown in 1 -m deep tubes of sand culture. Maximum rooting depth and root mass distribution were measured at four harvests over time, and root distribution data were fitted with a regression model to provide measures of root system shape. Morphological traits were measured at two depths at harvest 3. Root system shape of the hybrids was more similar to T. uniflorum than to white clover. The hybrids and T. uniflorum had a higher rate of decrease in root mass with depth than white clover, which would result in higher proportions of root mass in the upper profile. Percentage total root mass at 100-200 mm depth was higher for T. uniflorum than white clover, and for Crusader BC 1 than 'Crusader'. Roots of the hybrids and T. uniflorum also penetrated deeper than those of white clover. T. uniflorum had thicker roots at 50-100 mm deep than the other entries, and more of its fine root mass at 400-500 mm. The hybrids and white clover had more of their fine root mass higher in the profile. Consequently, T. uniflorum had a higher root length density at 400-500 mm than most entries, and a smaller decrease in root length density with depth. These results demonstrate that rooting characteristics of white clover can be altered by hybridization with T. uniflorum, potentially improving water and nutrient acquisition and drought resistance. Root traits of T. uniflorum are likely to be adaptations to soil moisture and fertility in its natural environment. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Root form and clinical radiographic estimation of the number of root ...

African Journals Online (AJOL)

The root form of 100 extracted maxillary premolars, the pre-operative radiographic estimation and clinical radiographic determination of the number of root canals in 340 maxillary premolars of Nigerian patients attending the dental hospital for endodontic treatment were studied. The maxillary second premolars had one root ...

Linking salinity stress tolerance with tissue-specific Na+ sequestration in wheat roots

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Honghong eWu

2015-02-01

Full Text Available Salinity stress tolerance is a physiologically complex trait that is conferred by the large array of interacting mechanisms. Among these, vacuolar Na+ sequestration has always been considered as one of the key components differentiating between sensitive and tolerant species and genotypes. However, vacuolar Na+ sequestration has been rarely considered in the context of the tissue-specific expression and regulation of appropriate transporters contributing to Na+ removal from the cytosol. In this work, six bread wheat varieties contrasting in their salinity tolerance (three tolerant and three sensitive were used to understand the essentiality of vacuolar Na+ sequestration between functionally different root tissues, and link it with the overall salinity stress tolerance in this species. Roots of 4-d old wheat seedlings were treated with 100 mM NaCl for 3 days, and then Na+ distribution between cytosol and vacuole was quantified by CoroNa Green fluorescent dye imaging. Our major observations were as follows: 1 salinity stress tolerance correlated positively with vacuolar Na+ sequestration ability in the mature root zone but not in the root apex; 2 Contrary to expectations, cytosolic Na+ levels in root meristem were significantly higher in salt tolerant than sensitive group, while vacuolar Na+ levels showed an opposite trend. These results are interpreted as meristem cells playing a role of the salt sensor; 3 No significant difference in the vacuolar Na+ sequestration ability was found between sensitive and tolerant group in either transition or elongation zones; 4 The overall Na+ accumulation was highest in the elongation zone, suggesting its role in osmotic adjustment and turgor maintenance required to drive root expansion growth. Overall, the reported results suggest high tissue-specificity of Na+ uptake, signalling, and sequestration in wheat root. The implications of these findings for plant breeding for salinity stress tolerance are discussed.

Biofiltro con cascarilla de arroz y pasto vetiver (C. Zizanioides para el tratamiento del efluente de la PTAR del INPEC – Yopal, Casanare, Colombia

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Sandy Katheryne Higuera Infante

2017-06-01

Full Text Available En la investigación se evaluó un biofiltro a escala laboratorio para el tratamiento del efluente de la PTAR del Inpec de Yopal, Casanare, cuya finalidad era lograr un efluente de calidad óptima para reúso del agua en riego agrícola. Se contemplaron tres fases, la primera caracterización y análisis de los parámetros microbiológicos como fisicoquímicos del efluente. La segunda fase diseño y construcción del sistema a escala laboratorio del humedal artificial, se construyó en vidrio, usando cascarilla de arroz, intercalada con grava, se sembró pasto vetiver (C. Zizanioides y se inundó el sistema para que funcionará con flujo subsuperficial, el tiempo de retención hidráulico TRH fue de 3.4 días. La desinfección con cloro se diseñó a partir de una prueba de demanda de cloro. La tercera fase consistió en la operación del sistema a flujo continuo, el seguimiento se realizó a través de 4 muestreos con frecuencia semanal, en dos de estos muestreos se incluyó medición de DBO5, coliformes totales y fecales y conductividad.  Los resultados mostraron que la cascarilla de arroz como sustrato funciona bien, las plantas crecieron permanentemente, ayudando a disminuir la carga orgánica. Como conclusión la cascarilla puede ser un sustituto total o parcial de otros sustratos de biofiltros o humedales de flujo subsuperficial, al ser menos costosa y estar disponible especialmente en la región de la Orinoquía. Sin embargo, su uso debe complementarse con un proceso de reoxigenación del agua, ya que su condición anaerobia es un aspecto negativo para los cuerpos de agua receptores de vertimientos.

[Effects nutrients on the seedlings root hair development and root growth of Poncirus trifoliata under hydroponics condition].

Science.gov (United States)

Cao, Xiu; Xia, Ren-Xue; Zhang, De-Jian; Shu, Bo

2013-06-01

Ahydroponics experiment was conducted to study the effects of nutrients (N, P, K, Ca, Mg, Fe, and Mn) deficiency on the length of primary root, the number of lateral roots, and the root hair density, length, and diameter on the primary root and lateral roots of Poncirus trifoliata seedlings. Under the deficiency of each test nutrient, root hair could generate, but was mainly concentrated on the root base and fewer on the root tip. The root hair density on lateral roots was significantly larger than that on primary root, but the root hair length was in adverse. The deficiency of each test nutrient had greater effects on the growth and development of root hairs, with the root hair density on primary root varied from 55.0 to 174.3 mm(-2). As compared with the control, Ca deficiency induced the significant increase of root hair density and length on primary root, P deficiency promoted the root hair density and length on the base and middle part of primary root and on the lateral roots significantly, Fe deficiency increased the root hair density but decreased the root hair length on the tip of primary root significantly, K deficiency significantly decreased the root hair density, length, and diameter on primary root and lateral roots, whereas Mg deficiency increased the root hair length of primary root significantly. In all treatments of nutrient deficiency, the primary root had the similar growth rate, but, with the exceptions of N and Mg deficiency, the lateral roots exhibited shedding and regeneration.

Root fractures

DEFF Research Database (Denmark)

Andreasen, Jens Ove; Christensen, Søren Steno Ahrensburg; Tsilingaridis, Georgios

2012-01-01

The purpose of this study was to analyze tooth loss after root fractures and to assess the influence of the type of healing and the location of the root fracture. Furthermore, the actual cause of tooth loss was analyzed....

Embryonic origin of the Arabidopsis primary root and root meristem initials

NARCIS (Netherlands)

Scheres, B.J.G.; Wolkenfelt, H.; Willemsen, V.; Terlouw, M.; Lawson, E.; Dean, C.; Weisbeek, P.

1994-01-01

The embryonic origin of the Arabidopsis root and hypocotyl region has been investigated using histological techniques and clonal analysis. Our data reveal the pattern of cell division in the embryo giving rise to the various initials within the root promeristem. A small region of the root at its

Adaptation of H+-pumping and plasma membrane H+ ATPase activity in proteoid roots of white lupin under phosphate deficiency.

Science.gov (United States)

Yan, Feng; Zhu, Yiyong; Müller, Caroline; Zörb, Christian; Schubert, Sven

2002-05-01

White lupin (Lupinus albus) is able to adapt to phosphorus deficiency by producing proteoid roots that release a huge amount of organic acids, resulting in mobilization of sparingly soluble soil phosphate in rhizosphere. The mechanisms responsible for the release of organic acids by proteoid root cells, especially the trans-membrane transport processes, have not been elucidated. Because of high cytosolic pH, the release of undissociated organic acids is not probable. In the present study, we focused on H+ export by plasma membrane H+ ATPase in active proteoid roots. In vivo, rhizosphere acidification of active proteoid roots was vanadate sensitive. Plasma membranes were isolated from proteoid roots and lateral roots from P-deficient and -sufficient plants. In vitro, in comparison with two types of lateral roots and proteoid roots of P-sufficient plants, the following increase of the various parameters was induced in active proteoid roots of P-deficient plants: (a) hydrolytic ATPase activity, (b) Vmax and Km, (c) H+ ATPase enzyme concentration of plasma membrane, (d) H+-pumping activity, (e) pH gradient across the membrane of plasmalemma vesicles, and (f) passive H+ permeability of plasma membrane. In addition, lower vanadate sensitivity and more acidic pH optimum were determined for plasma membrane ATPase of active proteoid roots. Our data support the hypothesis that in active proteoid root cells, H+ and organic anions are exported separately, and that modification of plasma membrane H+ ATPase is essential for enhanced rhizosphere acidification by active proteoid roots.

computer-aided root aided root aided root aided root-locus

African Journals Online (AJOL)

User

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Soil contamination with silver nanoparticles reduces Bishop pine growth and ectomycorrhizal diversity on pine roots

Energy Technology Data Exchange (ETDEWEB)

Sweet, M. J., E-mail: m.sweet@derby.ac.uk [University of Derby, Environmental Sustainability Research Centre, College of Life and Natural Sciences (United Kingdom); Singleton, I. [Newcastle University, School of Biology (United Kingdom)

2015-11-15

Soil contamination by silver nanoparticles (AgNP) is of potential environmental concern but little work has been carried out on the effect of such contamination on ectomycorrhizal fungi (EMF). EMF are essential to forest ecosystem functions as they are known to enhance growth of trees by nutrient transfer. In this study, soil was experimentally contaminated with AgNP (0, 350 and 790 mg Ag/kg) and planted with Bishop pine seedlings. The effect of AgNP was subsequently measured, assessing variation in pine growth and ectomycorrhizal diversity associated with the root system. After only 1 month, the highest AgNP level had significantly reduced the root length of pine seedlings, which in turn had a small effect on above ground plant biomass. However, after 4 months growth, both AgNP levels utilised had significantly reduced both pine root and shoot biomass. For example, even the lower levels of AgNP (350 mg Ag/kg) soil, reduced fresh root biomass by approximately 57 %. The root systems of the plants grown in AgNP-contaminated soils lacked the lateral and fine root development seen in the control plants (no AgNP). Although, only five different genera of EMF were found on roots of the control plants, only one genus Laccaria was found on roots of plants grown in soil containing 350 mg AgNP/kg. At the higher levels of AgNP contamination, no EMF were observed. Furthermore, extractable silver was found in soils containing AgNP, indicating potential dissolution of silver ions (Ag+) from the solid AgNP.

Soil contamination with silver nanoparticles reduces Bishop pine growth and ectomycorrhizal diversity on pine roots

International Nuclear Information System (INIS)

Sweet, M. J.; Singleton, I.

2015-01-01

Soil contamination by silver nanoparticles (AgNP) is of potential environmental concern but little work has been carried out on the effect of such contamination on ectomycorrhizal fungi (EMF). EMF are essential to forest ecosystem functions as they are known to enhance growth of trees by nutrient transfer. In this study, soil was experimentally contaminated with AgNP (0, 350 and 790 mg Ag/kg) and planted with Bishop pine seedlings. The effect of AgNP was subsequently measured, assessing variation in pine growth and ectomycorrhizal diversity associated with the root system. After only 1 month, the highest AgNP level had significantly reduced the root length of pine seedlings, which in turn had a small effect on above ground plant biomass. However, after 4 months growth, both AgNP levels utilised had significantly reduced both pine root and shoot biomass. For example, even the lower levels of AgNP (350 mg Ag/kg) soil, reduced fresh root biomass by approximately 57 %. The root systems of the plants grown in AgNP-contaminated soils lacked the lateral and fine root development seen in the control plants (no AgNP). Although, only five different genera of EMF were found on roots of the control plants, only one genus Laccaria was found on roots of plants grown in soil containing 350 mg AgNP/kg. At the higher levels of AgNP contamination, no EMF were observed. Furthermore, extractable silver was found in soils containing AgNP, indicating potential dissolution of silver ions (Ag+) from the solid AgNP

Why rooting fails

OpenAIRE

Creutz, Michael

2007-01-01

I explore the origins of the unphysical predictions from rooted staggered fermion algorithms. Before rooting, the exact chiral symmetry of staggered fermions is a flavored symmetry among the four "tastes." The rooting procedure averages over tastes of different chiralities. This averaging forbids the appearance of the correct 't Hooft vertex for the target theory.

Comparative response of six grapevine rootstocks to inoculation with arbuscular mycorrhizal fungi based on root traits

Science.gov (United States)

Pogiatzis, Antreas; Bowen, Pat; Hart, Miranda; Holland, Taylor; Klironomos, John

2017-04-01

Arbuscular mycorrhizal (AM) symbiosis has been proven to be essential in grapevines, sustaining plant growth especially under abiotic and biotic stressors. The mycorrhizal growth response of young grapevines varies among rootstock cultivars and the underlying mechanisms involved in this variation are unknown. We predicted that this variation in mycorrhizal response may be explained by differences in root traits among rootstocks. We analyzed the entire root system of six greenhouse-grown rootstocks (Salt Creek, 3309 Couderc, Riparia Gloire, 101-14 Millardet et de Grasset, Swarzmann, Teleki 5C), with and without AM fungal inoculation (Rhizophagus irregularis) and characterized their morphological and architectural responses. Twenty weeks after the inoculation, aboveground growth was enhanced by AM colonization. The rootstock varieties were distinctly different in their response to AM fungi, with Salt Creek receiving the highest growth benefit, while Schwarzmann and 5C Teleki receiving the lowest. Plant responsiveness to AM fungi was negatively correlated with branching intensity (fine roots per root length). Furthermore, there was evidence that mycorrhizas can influence the expression of root traits, inducing a higher branching intensity and a lower root to shoot ratio. The results of this study will help to elucidate how interactions between grapevine rootstocks and AM fungi may benefit the establishment of new vineyards.

Root system markup language: toward a unified root architecture description language.

Science.gov (United States)

Lobet, Guillaume; Pound, Michael P; Diener, Julien; Pradal, Christophe; Draye, Xavier; Godin, Christophe; Javaux, Mathieu; Leitner, Daniel; Meunier, Félicien; Nacry, Philippe; Pridmore, Tony P; Schnepf, Andrea

2015-03-01

The number of image analysis tools supporting the extraction of architectural features of root systems has increased in recent years. These tools offer a handy set of complementary facilities, yet it is widely accepted that none of these software tools is able to extract in an efficient way the growing array of static and dynamic features for different types of images and species. We describe the Root System Markup Language (RSML), which has been designed to overcome two major challenges: (1) to enable portability of root architecture data between different software tools in an easy and interoperable manner, allowing seamless collaborative work; and (2) to provide a standard format upon which to base central repositories that will soon arise following the expanding worldwide root phenotyping effort. RSML follows the XML standard to store two- or three-dimensional image metadata, plant and root properties and geometries, continuous functions along individual root paths, and a suite of annotations at the image, plant, or root scale at one or several time points. Plant ontologies are used to describe botanical entities that are relevant at the scale of root system architecture. An XML schema describes the features and constraints of RSML, and open-source packages have been developed in several languages (R, Excel, Java, Python, and C#) to enable researchers to integrate RSML files into popular research workflow. © 2015 American Society of Plant Biologists. All Rights Reserved.

Aortic distensibility after aortic root replacement assessed with cardiovascular magnetic resonance.

Science.gov (United States)

Melina, Giovanni; Rajappan, Kim; Amrani, Mohamed; Khaghani, Asghar; Pennell, Dudley J; Yacoub, Magdi H

2002-01-01

The changes in geometry of the aortic root during the cardiac cycle are thought to be essential for optimal valve function, both in terms of leaflet stress and dynamic behavior. Using cardiac magnetic resonance (CMR), the study aim was to determine aortic root distensibility of the homograft (group H) and the Medtronic Freestyle xenograft (group F) after aortic root replacement, from a prospective randomized trial. CMR was performed in 15 patients (six homografts, nine Freestyle) at six months and one year after surgery. Percentage change in aortic radius (PCR) and pressure strain elastic modulus (PSEM) were measured as indices of distensibility, and results related to left ventricular mass (LVM). At six months after surgery, mean PCR was 12+/-2.5 in group H and 12.9+/-6.1 in group F (p = NS), and PSEM was 428.5+/-69.8 and 493.5+/-72.7 g/cm2, respectively (p = NS). PCR was reduced to 10+/-1.7% in group H, and by 8.5+/-2.8% in group F (p = NS), while PSEM was increased to 520.5+/-87.3 and 825+/-420.4, respectively (p = NS) at the one-year follow up. Regression analysis showed a correlation between PCR and LVM (r = 0.52, p = 0.08) and LVM index (r = 0.46, p = 0.14), respectively. In addition, there was a relationship between PSEM, LVM and LVM index, suggesting that the stiffer the root wall, the higher the postoperative LVM. Up to one year after aortic root replacement, the wall of both the allogenic and xenogenic valves retained near-normal distensibility. For the first time, a correlation was demonstrated between the elastic properties of the aortic root and LVM. The longer-term behavior and clinical implications of these findings require further investigation.

Characterization of Root and Shoot Traits in Wheat Cultivars with Putative Differences in Root System Size

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Victoria Figueroa-Bustos

2018-07-01

Full Text Available Root system size is a key trait for improving water and nitrogen uptake efficiency in wheat (Triticum aestivum L.. This study aimed (i to characterize the root system and shoot traits of five wheat cultivars with apparent differences in root system size; (ii to evaluate whether the apparent differences in root system size observed at early vegetative stages in a previous semi-hydroponic phenotyping experiment are reflected at later phenological stages in plants grown in soil using large rhizoboxes. The five wheat cultivars were grown in a glasshouse in rhizoboxes filled to 1.0 m with field soil. Phenology and shoot traits were measured and root growth and proliferation were mapped to quantify root length density (RLD, root length per plant, root biomass and specific root length (SRL. Wheat cultivars with large root systems had greater root length, more root biomass and thicker roots, particularly in the top 40 cm, than those with small root systems. Cultivars that reached anthesis later had larger root system sizes than those that reached anthesis earlier. Later anthesis allowed more time for root growth and proliferation. Cultivars with large root systems had 25% more leaf area and biomass than those with small root systems, which presumably reflects high canopy photosynthesis to supply the demand for carbon assimilates to roots. Wheat cultivars with contrasting root system sizes at the onset of tillering (Z2.1 in a semi-hydroponic phenotyping system maintained their size ranking at booting (Z4.5 when grown in soil. Phenology, particularly time to anthesis, was associated with root system size.

Root Development of Transplanted Cotton and Simulation of Soil Water Movement under Different Irrigation Methods

Directory of Open Access Journals (Sweden)

Hao Zhang

2017-07-01

Full Text Available Winter wheat and cotton are the main crops grown on the North China Plain (NCP. Cotton is often transplanted after the winter wheat harvest to solve the competition for cultivated land between winter wheat and cotton, and to ensure that both crops can be harvested on the NCP. However, the root system of transplanted cotton is distorted due to the restrictions of the seedling aperture disk before transplanting. Therefore, the investigation of the deformed root distribution and water uptake in transplanted cotton is essential for simulating soil water movement under different irrigation methods. Thus, a field experiment and a simulation study were conducted during 2013–2015 to explore the deformed roots of transplanted cotton and soil water movement using border irrigation (BI and surface drip irrigation (SDI. The results showed that SDI was conducive to root growth in the shallow root zone (0–30 cm, and that BI was conducive to root growth in the deeper root zone (below 30 cm. SDI is well suited for producing the optimal soil water distribution pattern for the deformed root system of transplanted cotton, and the root system was more developed under SDI than under BI. Comparisons between experimental data and model simulations showed that the HYDRUS-2D model described the soil water content (SWC under different irrigation methods well, with root mean square errors (RMSEs of 0.023 and 0.029 cm3 cm−3 and model efficiencies (EFs of 0.68 and 0.59 for BI and SDI, respectively. Our findings will be very useful for designing an optimal irrigation plan for BI and SDI in transplanted cotton fields, and for promoting the wider use of this planting pattern for cotton transplantation.

A New Anatomically Based Nomenclature for the Roots and Root Canals—Part 1: Maxillary Molars

OpenAIRE

Kottoor, Jojo; Albuquerque, Denzil Valerian; Velmurugan, Natanasabapathy

2012-01-01

Numerous terminologies have been employed in the dental literature to describe the roots and root canal systems of maxillary molars. This multiplicity in naming of roots and canals makes the reader susceptible to misinterpretation and confusion. No consensus thus far has been arrived at for defining the names of roots and root canals in maxillary molars, including their various morphological aberrations. The anatomical relation of roots and their root canals were identified and were subsequen...

Cadmium translocation by contractile roots differs from that in regular, non-contractile roots.

Science.gov (United States)

Lux, Alexander; Lackovič, Andrej; Van Staden, Johannes; Lišková, Desana; Kohanová, Jana; Martinka, Michal

2015-06-01

Contractile roots are known and studied mainly in connection with the process of shrinkage of their basal parts, which acts to pull the shoot of the plant deeper into the ground. Previous studies have shown that the specific structure of these roots results in more intensive water uptake at the base, which is in contrast to regular root types. The purpose of this study was to find out whether the basal parts of contractile roots are also more active in translocation of cadmium to the shoot. Plants of the South African ornamental species Tritonia gladiolaris were cultivated in vitro for 2 months, at which point they possessed well-developed contractile roots. They were then transferred to Petri dishes with horizontally separated compartments of agar containing 50 µmol Cd(NO3)2 in the region of the root base or the root apex. Seedlings of 4-d-old maize (Zea mays) plants, which do not possess contractile roots, were also transferred to similar Petri dishes. The concentrations of Cd in the leaves of the plants were compared after 10 d of cultivation. Anatomical analyses of Tritonia roots were performed using appropriately stained freehand cross-sections. The process of contraction required specific anatomical adaptation of the root base in Tritonia, with less lignified and less suberized tissues in comparison with the subapical part of the root. These unusual developmental characteristics were accompanied by more intensive translocation of Cd ions from the basal part of contractile roots to the leaves than from the apical-subapical root parts. The opposite effects were seen in the non-contractile roots of maize, with higher uptake and transport by the apical parts of the root and lower uptake and transport by the basal part. The specific characteristics of contractile roots may have a significant impact on the uptake of ions, including toxic metals from the soil surface layers. This may be important for plant nutrition, for example in the uptake of nutrients from

Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.

Science.gov (United States)

Canales, Javier; Contreras-López, Orlando; Álvarez, José M; Gutiérrez, Rodrigo A

2017-10-01

Root hairs are specialized cells that are important for nutrient uptake. It is well established that nutrients such as phosphate have a great influence on root hair development in many plant species. Here we investigated the role of nitrate on root hair development at a physiological and molecular level. We showed that nitrate increases root hair density in Arabidopsis thaliana. We found that two different root hair defective mutants have significantly less nitrate than wild-type plants, suggesting that in A. thaliana root hairs have an important role in the capacity to acquire nitrate. Nitrate reductase-null mutants exhibited nitrate-dependent root hair phenotypes comparable with wild-type plants, indicating that nitrate is the signal that leads to increased formation of root hairs. We examined the role of two key regulators of root hair cell fate, CPC and WER, in response to nitrate treatments. Phenotypic analyses of these mutants showed that CPC is essential for nitrate-induced responses of root hair development. Moreover, we showed that NRT1.1 and TGA1/TGA4 are required for pathways that induce root hair development by suppression of longitudinal elongation of trichoblast cells in response to nitrate treatments. Our results prompted a model where nitrate signaling via TGA1/TGA4 directly regulates the CPC root hair cell fate specification gene to increase formation of root hairs in A. thaliana. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

Root type matters: measurements of water uptake by seminal, crown and lateral roots of maize

Science.gov (United States)

Ahmed, Mutez Ali; Zarebanadkouki, Mohsen; Kaestner, Anders; Carminati, Andrea

2016-04-01

Roots play a key role in water acquisition and are a significant component of plant adaptation to different environmental conditions. Although maize (Zea mays L.) is one of the most important crops worldwide, there is limited information on the function of different root segments and types in extracting water from soils. Aim of this study was to investigate the location of root water uptake in mature maize. We used neutron radiography to image the spatial distribution of maize roots and trace the transport of injected deuterated water (D2O) in soil and roots. Maize plants were grown in aluminum containers filled with a sandy soil that was kept homogeneously wet throughout the experiment. When the plants were five weeks-old, we injected D2O into selected soil regions. The transport of D2O was simulated using a diffusion-convection numerical model. By fitting the observed D2O transport we quantified the diffusion coefficient and the water uptake of the different root segments. The model was initially developed and tested with two weeks-old maize (Ahmed et. al. 2015), for which we found that water was mainly taken up by lateral roots and the water uptake of the seminal roots was negligible. Here, we used this method to measure root water uptake in a mature maize root system. The root architecture of five weeks-old maize consisted of primary and seminal roots with long laterals and crown (nodal) roots that emerged from the above ground part of the plant two weeks after planting. The crown roots were thicker than the seminal roots and had fewer and shorter laterals. Surprisingly, we found that the water was mainly taken up by the crown roots and their laterals, while the lateral roots of seminal roots, which were the main location of water uptake of younger plants, stopped to take up water. Interestingly, we also found that in contrast to the seminal roots, the crown roots were able to take up water also from their distal segments. We conclude that for the two weeks

ROOT HYDRAULIC CONDUCTIVITY AND PHOTOSYNTHETIC CAPACITY OF EUCALYPT CLONAL CUTTINGS WITH ROOT MALFORMATION INDUCTIONS

Directory of Open Access Journals (Sweden)

Fábio Afonso Mazzei Moura de Assis Figueiredo

2014-06-01

Full Text Available http://dx.doi.org/10.5902/1980509814566The gain reduction of wood biomass in trees has been assigned to root deformations even in the nursery phase. The objective of this work was the evaluation of the root system hydraulic conductivity, gas exchanges and photochemical efficiency of eucalypt clonal cuttings with and without root deformation inductions. The treatments were: 1 operational cuttings without root malformation inductions (grown according to the used methodology of Fibria Cellulose S.A.; 2 root deformation inductions. These inductions did not promote decrease in the root volume. However, the deformations brought reduction of the root system hydraulic conductivity. Lower photosynthetic rates were also observed along the day in the cuttings in the root deformed cuttings. This decreasing rate is connected to stomatal and non stomatal factors.

PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification

Directory of Open Access Journals (Sweden)

Marc eLartaud

2015-01-01

Full Text Available We developed the PHIV-RootCell software to quantify anatomical traits of rice roots transverse section images. Combined with an efficient root sample processing method for image acquisition, this program permits supervised measurements of areas (those of whole root section, stele, cortex and central metaxylem vessels, number of cell layers and number of cells per cell layer. The PHIV-RootCell toolset runs under ImageJ, an independent operating system that has a license-free status. To demonstrate the usefulness of PHIV-RootCell, we conducted a genetic diversity study and an analysis of salt-stress responses of root anatomical parameters in rice (Oryza sativa L.. Using 16 cultivars, we showed that we could discriminate between some of the varieties even at the 6 day-old stage, and that tropical japonica varieties had larger root sections due to an increase in cell number. We observed, as described previously, that root sections become enlarged under salt stress. However, our results show an increase in cell number in ground tissues (endodermis and cortex but a decrease in external (peripheral tissues (sclerenchyma, exodermis and epidermis. Thus, the PHIV-RootCell program is a user-friendly tool that will be helpful for future genetic and physiological studies that investigate root anatomical trait variations.

Root deformation reduces tolerance of lodgepole pine to attack by Warren root collar weevil.

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Robert, Jeanne A; Lindgren, B Staffan

2010-04-01

Surveys were conducted on regenerating stands of lodgepole pine to determine the relationship between root deformation and susceptibility to attack by the Warren root collar weevil, Hylobius warreni Wood. The total number of trees attacked by H. warreni did not differ between planted and natural trees. A matched case-control logistic regression suggested that root cross-sectional area was more important in predicting weevil attack for naturally regenerated trees than for planted trees, but weevils were associated with a larger reduction in height-to-diameter ratios for trees with planted root characteristics than for trees with natural root form. Neither the stability of attacked versus unattacked trees differed significantly and there was no significant interaction of weevil attack and tree type, but weevil-killed trees had different root characteristics than alive, attacked trees. Lateral distribution and root cross-sectional area were significant predictors of alive attacked trees versus weevil-killed trees, suggesting that trees with poor lateral spread or poor root cross-sectional area are more likely to die from weevil attack. We conclude that root deformation does not necessarily increase susceptibility to attack but may increase the likelihood of mortality. Thus, measures to facilitate good root form are needed when planting pine in areas with high risk of Warren root collar weevil attack.

Deciphering Phosphate Deficiency-Mediated Temporal Effects on Different Root Traits in Rice Grown in a Modified Hydroponic System

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Negi, Manisha; Sanagala, Raghavendrarao; Rai, Vandna; Jain, Ajay

2016-01-01

Phosphate (Pi), an essential macronutrient for growth and development of plant, is often limiting in soils. Plants have evolved an array of adaptive strategies including modulation of root system architecture (RSA) for optimal acquisition of Pi. In rice, a major staple food, RSA is complex and comprises embryonically developed primary and seminal roots and post-embryonically developed adventitious and lateral roots. Earlier studies have used variant hydroponic systems for documenting the effects of Pi deficiency largely on primary root growth. Here, we report the temporal effects of Pi deficiency in rice genotype MI48 on 15 ontogenetically distinct root traits by using easy-to-assemble and economically viable modified hydroponic system. Effects of Pi deprivation became evident after 4 days- and 7 days-treatments on two and eight different root traits, respectively. The effects of Pi deprivation for 7 days were also evident on different root traits of rice genotype Nagina 22 (N22). There were genotypic differences in the responses of primary root growth along with lateral roots on it and the number and length of seminal and adventitious roots. Notably though, there were attenuating effects of Pi deficiency on the lateral roots on seminal and adventitious roots and total root length in both these genotypes. The study thus revealed both differential and comparable effects of Pi deficiency on different root traits in these genotypes. Pi deficiency also triggered reduction in Pi content and induction of several Pi starvation-responsive (PSR) genes in roots of MI48. Together, the analyses validated the fidelity of this modified hydroponic system for documenting Pi deficiency-mediated effects not only on different traits of RSA but also on physiological and molecular responses. PMID:27200025

Plant roots use a patterning mechanism to position lateral root branches toward available water.

Science.gov (United States)

Bao, Yun; Aggarwal, Pooja; Robbins, Neil E; Sturrock, Craig J; Thompson, Mark C; Tan, Han Qi; Tham, Cliff; Duan, Lina; Rodriguez, Pedro L; Vernoux, Teva; Mooney, Sacha J; Bennett, Malcolm J; Dinneny, José R

2014-06-24

The architecture of the branched root system of plants is a major determinant of vigor. Water availability is known to impact root physiology and growth; however, the spatial scale at which this stimulus influences root architecture is poorly understood. Here we reveal that differences in the availability of water across the circumferential axis of the root create spatial cues that determine the position of lateral root branches. We show that roots of several plant species can distinguish between a wet surface and air environments and that this also impacts the patterning of root hairs, anthocyanins, and aerenchyma in a phenomenon we describe as hydropatterning. This environmental response is distinct from a touch response and requires available water to induce lateral roots along a contacted surface. X-ray microscale computed tomography and 3D reconstruction of soil-grown root systems demonstrate that such responses also occur under physiologically relevant conditions. Using early-stage lateral root markers, we show that hydropatterning acts before the initiation stage and likely determines the circumferential position at which lateral root founder cells are specified. Hydropatterning is independent of endogenous abscisic acid signaling, distinguishing it from a classic water-stress response. Higher water availability induces the biosynthesis and transport of the lateral root-inductive signal auxin through local regulation of tryptophan aminotransferase of Arabidopsis 1 and PIN-formed 3, both of which are necessary for normal hydropatterning. Our work suggests that water availability is sensed and interpreted at the suborgan level and locally patterns a wide variety of developmental processes in the root.

1-Aminocyclopropane-1-carboxylic acid (ACC) concentration and ACC synthase expression in soybean roots, root tips, and soybean cyst nematode (Heterodera glycines)-infected roots.

Science.gov (United States)

Tucker, Mark L; Xue, Ping; Yang, Ronghui

2010-01-01

Colonization of plant roots by root knot and cyst nematodes requires a functional ethylene response pathway. However, ethylene plays many roles in root development and whether its role in nematode colonization is direct or indirect, for example lateral root initiation or root hair growth, is not known. The temporal requirement for ethylene and localized synthesis of ethylene during the life span of soybean cyst nematode (SCN) on soybean roots was further investigated. Although a significant increase in ethylene evolution was not detected from SCN-colonized roots, the concentration of the immediate precursor to ethylene, 1-aminocyclopropane-1-carboxylic acid (ACC), was higher in SCN-colonized root pieces and root tips than in other parts of the root. Moreover, expression analysis of 17 ACC synthase (ACS) genes indicated that a select set of ACS genes is expressed in SCN-colonized root pieces that is clearly different from the set of genes expressed in non-colonized roots or root tips. Semi-quantitative real-time PCR indicated that ACS transcript accumulation correlates with the high concentration of ACC in root tips. In addition, an ACS-like sequence was found in the public SCN nucleotide database. Acquisition of a full-length sequence for this mRNA (accession GQ389647) and alignment with transcripts for other well-characterized ACS proteins indicated that the nematode sequence is missing a key element required for ACS activity and therefore probably is not a functional ACS. Moreover, no significant amount of ACC was found in any growth stage of SCN that was tested.

Short range attraction of Ceratitis capitata (Diptera: Tephritidae) sterile males to six commercially available plant essential oils

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Plant essential oils have a number of roles in insect pest management. For male Ceratitis capitata, this includes use of angelica seed oil as long range attractants and ginger root oil as aromatherapy, which is exposure to sterile males to increase mating success. Neither of these plants are hosts f...

Air lateral root pruning affects longleaf pine seedling root system morphology

Science.gov (United States)

Shi-Jean Susana Sung; Dave Haywood

2016-01-01

Longleaf pine (Pinus palustris) seedlings were cultured with air lateral root pruning (side-vented containers, VT) or without (solid-walled containers, SW). Seedling root system morphology and growth were assessed before planting and 8 and 14 months after planting. Although VT seedlings had greater root collar diameter than the SW before planting,...

Relationships between root respiration rate and root morphology, chemistry and anatomy in Larix gmelinii and Fraxinus mandshurica.

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Jia, Shuxia; McLaughlin, Neil B; Gu, Jiacun; Li, Xingpeng; Wang, Zhengquan

2013-06-01

Tree roots are highly heterogeneous in form and function. Previous studies revealed that fine root respiration was related to root morphology, tissue nitrogen (N) concentration and temperature, and varied with both soil depth and season. The underlying mechanisms governing the relationship between root respiration and root morphology, chemistry and anatomy along the root branch order have not been addressed. Here, we examined these relationships of the first- to fifth-order roots for near surface roots (0-10 cm) of 22-year-old larch (Larix gmelinii L.) and ash (Fraxinus mandshurica L.) plantations. Root respiration rate at 18 °C was measured by gas phase O2 electrodes across the first five branching order roots (the distal roots numbered as first order) at three times of the year. Root parameters of root diameter, specific root length (SRL), tissue N concentration, total non-structural carbohydrates (starch and soluble sugar) concentration (TNC), cortical thickness and stele diameter were also measured concurrently. With increasing root order, root diameter, TNC and the ratio of root TNC to tissue N concentration increased, while the SRL, tissue N concentration and cortical proportion decreased. Root respiration rate also monotonically decreased with increasing root order in both species. Cortical tissue (including exodermis, cortical parenchyma and endodermis) was present in the first three order roots, and cross sections of the cortex for the first-order root accounted for 68% (larch) and 86% (ash) of the total cross section of the root. Root respiration was closely related to root traits such as diameter, SRL, tissue N concentration, root TNC : tissue N ratio and stele-to-root diameter proportion among the first five orders, which explained up to 81-94% of variation in the rate of root respiration for larch and up to 83-93% for ash. These results suggest that the systematic variations of root respiration rate within tree fine root system are possibly due to the

Model Persamaan Massa Karbon Akar Pohon dan Root-Shoot Ratio Massa Karbon (Equation Models of Tree Root Carbon Mass and Root-Shoot Carbon Mass Ratio

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Elias .

2011-03-01

Full Text Available The case study was conducted in the area of Acacia mangium plantation at BKPH Parung Panjang, KPH Bogor. The objective of the study was to formulate equation models of tree root carbon mass and root to shoot carbon mass ratio of the plantation. It was found that carbon content in the parts of tree biomass (stems, branches, twigs, leaves, and roots was different, in which the highest and the lowest carbon content was in the main stem of the tree and in the leaves, respectively. The main stem and leaves of tree accounted for 70% of tree biomass. The root-shoot ratio of root biomass to tree biomass above the ground and the root-shoot ratio of root biomass to main stem biomass was 0.1443 and 0.25771, respectively, in which 75% of tree carbon mass was in the main stem and roots of tree. It was also found that the root-shoot ratio of root carbon mass to tree carbon mass above the ground and the root-shoot ratio of root carbon mass to tree main stem carbon mass was 0.1442 and 0.2034, respectively. All allometric equation models of tree root carbon mass of A. mangium have a high goodness-of-fit as indicated by its high adjusted R2.Keywords: Acacia mangium, allometric, root-shoot ratio, biomass, carbon mass

Low Light Availability Alters Root Exudation and Reduces Putative Beneficial Microorganisms in Seagrass Roots

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Belinda C. Martin

2018-01-01

Full Text Available Seagrass roots host a diverse microbiome that is critical for plant growth and health. Composition of microbial communities can be regulated in part by root exudates, but the specifics of these interactions in seagrass rhizospheres are still largely unknown. As light availability controls primary productivity, reduced light may impact root exudation and consequently the composition of the root microbiome. Hence, we analyzed the influence of light availability on root exudation and community structure of the root microbiome of three co-occurring seagrass species, Halophila ovalis, Halodule uninervis and Cymodocea serrulata. Plants were grown under four light treatments in mesocosms for 2 weeks; control (100% surface irradiance (SI, medium (40% SI, low (20% SI and fluctuating light (10 days 20% and 4 days 100%. 16S rDNA amplicon sequencing revealed that microbial diversity, composition and predicted function were strongly influenced by the presence of seagrass roots, such that root microbiomes were unique to each seagrass species. Reduced light availability altered seagrass root exudation, as characterized using fluorescence spectroscopy, and altered the composition of seagrass root microbiomes with a reduction in abundance of potentially beneficial microorganisms. Overall, this study highlights the potential for above-ground light reduction to invoke a cascade of changes from alterations in root exudation to a reduction in putative beneficial microorganisms and, ultimately, confirms the importance of the seagrass root environment – a critical, but often overlooked space.

[Fine root dynamics and its relationship with soil fertility in tropical rainforests of Chocó].

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Quinto, Harley; Caicedo, Haylin; Thelis Perez, May; Moreno, Flavio

2016-12-01

The fine roots play an important role in the acquisition of water and minerals from the soil, the global carbon balance and mitigation of climate change. The dynamics (productivity and turnover) of fine roots is essential for nutrient cycling and carbon balance of forest ecosystems. The availability of soil water and nutrients has significantly determined the productivity and turnover of fine roots. It has been hypothesized that fine roots dynamics increases with the availability of soil resources in tropical forest ecosystems. To test this hypothesis in tropical rainforests of Chocó (ecosystems with the highest rainfall in the world), five one-ha permanent plots were established in the localities of Opogodó and Pacurita, where the productivity and turnover of fine roots were measured at 0-10 cm and 10-20 cm depth. The measurement of the fine root production was realized by the Ingrowth core method. The fine root turnover was measured like fine roots production divided mean annual biomass. In addition, soil fertility parameters (pH, nutrients, and texture) were measured and their association with productivity and turnover of fine roots was evaluated. It was found that the sites had nutrient-poor soils. The localities also differ in soil; Opogodó has sandy soils and flat topography, and Pacurita has clay soils, rich in aluminum and mountainous topography. In Opogodó fine root production was 6.50 ± 2.62 t/ha.yr (mean ± SD). In Pacurita, fine root production was 3.61 ± 0.88 t/ha.yr. Also in Opogodó, the fine root turnover was higher than in Pacurita (1.17 /y and 0.62 /y, respectively). Fine root turnover and production in the upper soil layers (10 cm upper soil) was considerably higher. Productivity and turnover of fine roots showed positive correlation with pH and contents of organic matter, total N, K, Mg, and sand; whereas correlations were negative with ECEC and contents of Al, silt, and clay. The percentage of sand was the parameter that best explained

Root-Cause Analysis of Persistently High Maternal Mortality in a Rural District of Indonesia: Role of Clinical Care Quality and Health Services Organizational Factors.

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Mahmood, Mohammad Afzal; Mufidah, Ismi; Scroggs, Steven; Siddiqui, Amna Rehana; Raheel, Hafsa; Wibdarminto, Koentijo; Dirgantoro, Bernardus; Vercruyssen, Jorien; Wahabi, Hayfaa A

2018-01-01

Despite significant reduction in maternal mortality, there are still many regions in the world that suffer from high mortality. District Kutai Kartanegara, Indonesia, is one such region where consistently high maternal mortality was observed despite high rate of delivery by skilled birth attendants. Thirty maternal deaths were reviewed using verbal autopsy interviews, terminal event reporting, medical records' review, and Death Audit Committee reports, using a comprehensive root-cause analysis framework including Risk Identification, Signal Services, Emergency Obstetrics Care Evaluation, Quality, and 3 Delays. The root causes were found in poor quality of care, which caused hospital to be unprepared to manage deteriorating patients. In hospital, poor implementation of standard operating procedures was rooted in inadequate skills, lack of forward planning, ineffective communication, and unavailability of essential services. In primary care, root causes included inadequate risk management, referrals to facilities where needed services are not available, and lack of coordination between primary healthcare and hospitals. There is an urgent need for a shift in focus to quality of care through knowledge, skills, and support for consistent application of protocols, making essential services available, effective risk assessment and management, and facilitating timely referrals to facilities that are adequately equipped.

Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.

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Sheng, Lihong; Hu, Xiaomei; Du, Yujuan; Zhang, Guifang; Huang, Hai; Scheres, Ben; Xu, Lin

2017-09-01

Lateral roots (LRs), which originate from the growing root, and adventitious roots (ARs), which are formed from non-root organs, are the main contributors to the post-embryonic root system in Arabidopsis However, our knowledge of how formation of the root system is altered in response to diverse inductive cues is limited. Here, we show that WOX11 contributes to root system plasticity. When seedlings are grown vertically on medium, WOX11 is not expressed in LR founder cells. During AR initiation, WOX11 is expressed in AR founder cells and activates LBD16 LBD16 also functions in LR formation and is activated in that context by ARF7 / 19 and not by WOX11 This indicates that divergent initial processes that lead to ARs and LRs may converge on a similar mechanism for primordium development. Furthermore, we demonstrated that when plants are grown in soil or upon wounding on medium, the primary root is able to produce both WOX11 -mediated and non- WOX11 -mediated roots. The discovery of WOX11 -mediated root-derived roots reveals a previously uncharacterized pathway that confers plasticity during the generation of root system architecture in response to different inductive cues. © 2017. Published by The Company of Biologists Ltd.

Composite Cucurbita pepo plants with transgenic roots as a tool to study root development.

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Ilina, Elena L; Logachov, Anton A; Laplaze, Laurent; Demchenko, Nikolay P; Pawlowski, Katharina; Demchenko, Kirill N

2012-07-01

In most plant species, initiation of lateral root primordia occurs above the elongation zone. However, in cucurbits and some other species, lateral root primordia initiation and development takes place in the apical meristem of the parental root. Composite transgenic plants obtained by Agrobacterium rhizogenes-mediated transformation are known as a suitable model to study root development. The aim of the present study was to establish this transformation technique for squash. The auxin-responsive promoter DR5 was cloned into the binary vectors pKGW-RR-MGW and pMDC162-GFP. Incorporation of 5-ethynyl-2'-deoxyuridine (EdU) was used to evaluate the presence of DNA-synthesizing cells in the hypocotyl of squash seedlings to find out whether they were suitable for infection. Two A. rhizogenes strains, R1000 and MSU440, were used. Roots containing the respective constructs were selected based on DsRED1 or green fluorescent protein (GFP) fluorescence, and DR5::Egfp-gusA or DR5::gusA insertion, respectively, was verified by PCR. Distribution of the response to auxin was visualized by GFP fluorescence or β-glucuronidase (GUS) activity staining and confirmed by immunolocalization of GFP and GUS proteins, respectively. Based on the distribution of EdU-labelled cells, it was determined that 6-day-old squash seedlings were suited for inoculation by A. rhizogenes since their root pericycle and the adjacent layers contain enough proliferating cells. Agrobacterium rhizogenes R1000 proved to be the most virulent strain on squash seedlings. Squash roots containing the respective constructs did not exhibit the hairy root phenotype and were morphologically and structurally similar to wild-type roots. The auxin response pattern in the root apex of squash resembled that in arabidopsis roots. Composite squash plants obtained by A. rhizogenes-mediated transformation are a good tool for the investigation of root apical meristem development and root branching.

Chromatic roots and hamiltonian paths

DEFF Research Database (Denmark)

Thomassen, Carsten

2000-01-01

We present a new connection between colorings and hamiltonian paths: If the chromatic polynomial of a graph has a noninteger root less than or equal to t(n) = 2/3 + 1/3 (3)root (26 + 6 root (33)) + 1/3 (3)root (26 - 6 root (33)) = 1.29559.... then the graph has no hamiltonian path. This result...

Differences in U root-to-shoot translocation between plant species explained by U distribution in roots

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Straczek, Anne; Duquene, Lise [Belgium Nuclear Research Centre (SCK.CEN), Biosphere Impact Studies, Boeretang 200, 2400 Mol (Belgium); Wegrzynek, Dariusz [IAEA, Seibersdorf Laboratories, A-2444 Seibersdorf (Austria); Faculty of Physics and Applied Computer Science, AGH University of Science and Technology, Al. Mickiewicza 30, 30-059 Krakow (Poland); Chinea-Cano, Ernesto [IAEA, Seibersdorf Laboratories, A-2444 Seibersdorf (Austria); Wannijn, Jean [Belgium Nuclear Research Centre (SCK.CEN), Biosphere Impact Studies, Boeretang 200, 2400 Mol (Belgium); Navez, Jacques [Royal Museum of Africa, Department of Geology, Leuvensesteenweg 13, 3080 Tervuren (Belgium); Vandenhove, Hildegarde, E-mail: hvandenh@sckcen.b [Belgium Nuclear Research Centre (SCK.CEN), Biosphere Impact Studies, Boeretang 200, 2400 Mol (Belgium)

2010-03-15

Accumulation and distribution of uranium in roots and shoots of four plants species differing in their cation exchange capacity of roots (CECR) was investigated. After exposure in hydroponics for seven days to 100 mumol U L{sup -1}, distribution of uranium in roots was investigated through chemical extraction of roots. Higher U concentrations were measured in roots of dicots which showed a higher CECR than monocot species. Chemical extractions indicated that uranium is mostly located in the apoplasm of roots of monocots but that it is predominantly located in the symplasm of roots of dicots. Translocation of U to shoot was not significantly affected by the CECR or distribution of U between symplasm and apoplasm. Distribution of uranium in roots was investigated through chemical extraction of roots for all species. Additionally, longitudinal and radial distribution of U in roots of maize and Indian mustard, respectively showing the lowest and the highest translocation, was studied following X-ray fluorescence (XRF) analysis of specific root sections. Chemical analysis and XRF analysis of roots of maize and Indian mustard clearly indicated a higher longitudinal and radial transport of uranium in roots of Indian mustard than in roots of maize, where uranium mostly accumulated in root tips. These results showed that even if CECR could partly explain U accumulation in roots, other mechanisms like radial and longitudinal transport are implied in the translocation of U to the shoot.

Differences in U root-to-shoot translocation between plant species explained by U distribution in roots

International Nuclear Information System (INIS)

Straczek, Anne; Duquene, Lise; Wegrzynek, Dariusz; Chinea-Cano, Ernesto; Wannijn, Jean; Navez, Jacques; Vandenhove, Hildegarde

2010-01-01

Accumulation and distribution of uranium in roots and shoots of four plants species differing in their cation exchange capacity of roots (CECR) was investigated. After exposure in hydroponics for seven days to 100 μmol U L -1 , distribution of uranium in roots was investigated through chemical extraction of roots. Higher U concentrations were measured in roots of dicots which showed a higher CECR than monocot species. Chemical extractions indicated that uranium is mostly located in the apoplasm of roots of monocots but that it is predominantly located in the symplasm of roots of dicots. Translocation of U to shoot was not significantly affected by the CECR or distribution of U between symplasm and apoplasm. Distribution of uranium in roots was investigated through chemical extraction of roots for all species. Additionally, longitudinal and radial distribution of U in roots of maize and Indian mustard, respectively showing the lowest and the highest translocation, was studied following X-ray fluorescence (XRF) analysis of specific root sections. Chemical analysis and XRF analysis of roots of maize and Indian mustard clearly indicated a higher longitudinal and radial transport of uranium in roots of Indian mustard than in roots of maize, where uranium mostly accumulated in root tips. These results showed that even if CECR could partly explain U accumulation in roots, other mechanisms like radial and longitudinal transport are implied in the translocation of U to the shoot.

WHEN STRESS AND DEVELOPMENT GO HAND IN HAND: MAIN HORMONAL CONTROLS OF ADVENTITIOUS ROOTING IN CUTTINGS

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Cibele Tesser Da Costa

2013-05-01

Full Text Available Adventitious rooting (AR is a multifactorial response leading to new roots at the base of stem cuttings, and the establishment of a complete and autonomous plant. AR has two main phases: a induction, with a requirement for higher auxin concentration; b formation, inhibited by high auxin and in which anatomical changes take place. The first stages of this process in severed organs necessarily include wounding and water stress responses which may trigger hormonal changes that contribute to reprogram target cells that are competent to respond to rooting stimuli. At severance, the roles of jasmonate and abscisic acid are critical for wound response and perhaps sink strength establishment, although their negative roles on the cell cycle may inhibit root induction. Strigolactones may also inhibit AR. A reduced cytokinin concentration in cuttings results from the separation of the root system, whose tips are a relevant source of these root induction inhibitors. The combined increased accumulation of basipetally transported auxins from the shoot apex at the cutting base is often sufficient for AR in easy-to-root species. The role of peroxidases and phenolic compounds in auxin catabolism may be critical at these early stages right after wounding. The events leading to AR strongly depend on mother plant nutritional status, both in terms of minerals and carbohydrates, as well as on sink establishment at cutting bases. Auxins play a central role in AR. Auxin transporters control auxin canalization to target cells. There, auxins act primarily through selective proteolysis and cell wall loosening, via their receptor proteins TIR1 and ABP1. A complex microRNA circuitry is involved in the control of auxin response factors essential for gene expression in AR. After root establishment, new hormonal controls take place, with auxins being required at lower concentrations for root meristem maintenance and cytokinins needed for root tissue differentiation.

Semiconductor laser irradiation improves root canal sealing during routine root canal therapy

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Hu, Xingxue; Wang, Dashan; Cui, Ting; Yao, Ruyong

2017-01-01

Objective To evaluate the effect of semiconductor laser irradiation on root canal sealing after routine root canal therapy (RCT). Methods Sixty freshly extracted single-rooted human teeth were randomly divided into six groups (n = 10). The anatomic crowns were sectioned at the cementoenamel junction and the remaining roots were prepared endodontically with conventional RCT methods. Groups A and B were irradiated with semiconductor laser at 1W for 20 seconds; Groups C and D were ultrasonically rinsed for 60 seconds as positive control groups; Groups E and F without treatment of root canal prior to RCT as negative control groups. Root canal sealing of Groups A, C and E were evaluated by measurements of apical microleakage. The teeth from Groups B, D and F were sectioned, and the micro-structures were examined with scanning electron microscopy (SEM). One way ANOVA and LSD-t test were used for statistical analysis (α = .05). Results The apical sealing of both the laser irradiated group and the ultrasonic irrigated group were significantly different from the control group (pirrigated group (p>0.5). SEM observation showed that most of the dentinal tubules in the laser irradiation group melted, narrowed or closed, while most of the dentinal tubules in the ultrasonic irrigation group were filled with tooth paste. Conclusion The application of semiconductor laser prior to root canal obturation increases the apical sealing of the roots treated. PMID:28957407

Root exudates from grafted-root watermelon showed a certain contribution in inhibiting Fusarium oxysporum f. sp. niveum.

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Ning Ling

Full Text Available Grafting watermelon onto bottle gourd rootstock is commonly used method to generate resistance to Fusarium oxysporum f. sp. niveum (FON, but knowledge of the effect of the root exudates of grafted watermelon on this soil-borne pathogen in rhizosphere remains limited. To investigate the root exudate profiles of the own-root bottle gourd, grafted-root watermelon and own-root watermelon, recirculating hydroponic culture system was developed to continuously trap these root exudates. Both conidial germination and growth of FON were significantly decreased in the presence of root exudates from the grafted-root watermelon compared with the own-root watermelon. HPLC analysis revealed that the composition of the root exudates released by the grafted-root watermelon differed not only from the own-root watermelon but also from the bottle gourd rootstock plants. We identified salicylic acid in all 3 root exudates, chlorogenic acid and caffeic acid in root exudates from own-root bottle gourd and grafted-root watermelon but not own-root watermelon, and abundant cinnamic acid only in own-root watermelon root exudates. The chlorogenic and caffeic acid were candidates for potentiating the enhanced resistance of the grafted watermelon to FON, therefore we tested the effects of the two compounds on the conidial germination and growth of FON. Both phenolic acids inhibited FON conidial germination and growth in a dose-dependent manner, and FON was much more susceptible to chlorogenic acid than to caffeic acid. In conclusion, the key factor in attaining the resistance to Fusarium wilt is grafting on the non-host root stock, however, the root exudates profile also showed some contribution in inhibiting FON. These results will help to better clarify the disease resistance mechanisms of grafted-root watermelon based on plant-microbe communication and will guide the improvement of strategies against Fusarium-mediated wilt of watermelon plants.

Quantitative analysis of essential oils in perfume using multivariate curve resolution combined with comprehensive two-dimensional gas chromatography.

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de Godoy, Luiz Antonio Fonseca; Hantao, Leandro Wang; Pedroso, Marcio Pozzobon; Poppi, Ronei Jesus; Augusto, Fabio

2011-08-05

The use of multivariate curve resolution (MCR) to build multivariate quantitative models using data obtained from comprehensive two-dimensional gas chromatography with flame ionization detection (GC×GC-FID) is presented and evaluated. The MCR algorithm presents some important features, such as second order advantage and the recovery of the instrumental response for each pure component after optimization by an alternating least squares (ALS) procedure. A model to quantify the essential oil of rosemary was built using a calibration set containing only known concentrations of the essential oil and cereal alcohol as solvent. A calibration curve correlating the concentration of the essential oil of rosemary and the instrumental response obtained from the MCR-ALS algorithm was obtained, and this calibration model was applied to predict the concentration of the oil in complex samples (mixtures of the essential oil, pineapple essence and commercial perfume). The values of the root mean square error of prediction (RMSEP) and of the root mean square error of the percentage deviation (RMSPD) obtained were 0.4% (v/v) and 7.2%, respectively. Additionally, a second model was built and used to evaluate the accuracy of the method. A model to quantify the essential oil of lemon grass was built and its concentration was predicted in the validation set and real perfume samples. The RMSEP and RMSPD obtained were 0.5% (v/v) and 6.9%, respectively, and the concentration of the essential oil of lemon grass in perfume agreed to the value informed by the manufacturer. The result indicates that the MCR algorithm is adequate to resolve the target chromatogram from the complex sample and to build multivariate models of GC×GC-FID data. Copyright © 2011 Elsevier B.V. All rights reserved.

RootAnalyzer: A Cross-Section Image Analysis Tool for Automated Characterization of Root Cells and Tissues.

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Joshua Chopin

Full Text Available The morphology of plant root anatomical features is a key factor in effective water and nutrient uptake. Existing techniques for phenotyping root anatomical traits are often based on manual or semi-automatic segmentation and annotation of microscopic images of root cross sections. In this article, we propose a fully automated tool, hereinafter referred to as RootAnalyzer, for efficiently extracting and analyzing anatomical traits from root-cross section images. Using a range of image processing techniques such as local thresholding and nearest neighbor identification, RootAnalyzer segments the plant root from the image's background, classifies and characterizes the cortex, stele, endodermis and epidermis, and subsequently produces statistics about the morphological properties of the root cells and tissues. We use RootAnalyzer to analyze 15 images of wheat plants and one maize plant image and evaluate its performance against manually-obtained ground truth data. The comparison shows that RootAnalyzer can fully characterize most root tissue regions with over 90% accuracy.

Effects of fine root length density and root biomass on soil preferential flow in forest ecosystems

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Yinghu Zhang

2015-04-01

Full Text Available Aim of study: The study was conducted to characterize the impacts of plant roots systems (e.g., root length density and root biomass on soil preferential flow in forest ecosystems. Area of study: The study was carried out in Jiufeng National Forest Park, Beijing, China. Material and methods: The flow patterns were measured by field dye tracing experiments. Different species (Sophora japonica Linn,Platycladus orientalis Franco, Quercus dentata Thunbwere quantified in two replicates, and 12 soil depth were applied. Plant roots were sampled in the sieving methods. Root length density and root biomass were measured by WinRHIZO. Dye coverage was implied in the image analysis, and maximum depth of dye infiltration by direct measurement. Main results: Root length density and root biomass decreased with the increasing distance from soil surface, and root length density was 81.6% higher in preferential pathways than in soil matrix, and 66.7% for root biomass with respect to all experimental plots. Plant roots were densely distributed in the upper soil layers. Dye coverage was almost 100% in the upper 5-10 cm, but then decreased rapidly with soil depth. Root length density and root biomass were different from species: Platycladus orientalis Franco > Quercus dentata Thunb > Sophora japonica Linn. Research highlights: The results indicated that fine roots systems had strong effects on soil preferential flow, particularly root channels enhancing nutrition transport across soil profiles in forest dynamics.

Rapid phenotyping of crop root systems in undisturbed field soils using X-ray computed tomography.

Science.gov (United States)

Pfeifer, Johannes; Kirchgessner, Norbert; Colombi, Tino; Walter, Achim

2015-01-01

X-ray computed tomography (CT) has become a powerful tool for root phenotyping. Compared to rather classical, destructive methods, CT encompasses various advantages. In pot experiments the growth and development of the same individual root can be followed over time and in addition the unaltered configuration of the 3D root system architecture (RSA) interacting with a real field soil matrix can be studied. Yet, the throughput, which is essential for a more widespread application of CT for basic research or breeding programs, suffers from the bottleneck of rapid and standardized segmentation methods to extract root structures. Using available methods, root segmentation is done to a large extent manually, as it requires a lot of interactive parameter optimization and interpretation and therefore needs a lot of time. Based on commercially available software, this paper presents a protocol that is faster, more standardized and more versatile compared to existing segmentation methods, particularly if used to analyse field samples collected in situ. To the knowledge of the authors this is the first study approaching to develop a comprehensive segmentation method suitable for comparatively large columns sampled in situ which contain complex, not necessarily connected root systems from multiple plants grown in undisturbed field soil. Root systems from several crops were sampled in situ and CT-volumes determined with the presented method were compared to root dry matter of washed root samples. A highly significant (P < 0.01) and strong correlation (R(2) = 0.84) was found, demonstrating the value of the presented method in the context of field research. Subsequent to segmentation, a method for the measurement of root thickness distribution has been used. Root thickness is a central RSA trait for various physiological research questions such as root growth in compacted soil or under oxygen deficient soil conditions, but hardly assessable in high throughput until today, due

Influence of root-water-uptake parameterization on simulated heat transport in a structured forest soil

Science.gov (United States)

Votrubova, Jana; Vogel, Tomas; Dohnal, Michal; Dusek, Jaromir

2015-04-01

Coupled simulations of soil water flow and associated transport of substances have become a useful and increasingly popular tool of subsurface hydrology. Quality of such simulations is directly affected by correctness of its hydraulic part. When near-surface processes under vegetation cover are of interest, appropriate representation of the root water uptake becomes essential. Simulation study of coupled water and heat transport in soil profile under natural conditions was conducted. One-dimensional dual-continuum model (S1D code) with semi-separate flow domains representing the soil matrix and the network of preferential pathways was used. A simple root water uptake model based on water-potential-gradient (WPG) formulation was applied. As demonstrated before [1], the WPG formulation - capable of simulating both the compensatory root water uptake (in situations when reduced uptake from dry layers is compensated by increased uptake from wetter layers), and the root-mediated hydraulic redistribution of soil water - enables simulation of more natural soil moisture distribution throughout the root zone. The potential effect on heat transport in a soil profile is the subject of the present study. [1] Vogel T., M. Dohnal, J. Dusek, J. Votrubova, and M. Tesar. 2013. Macroscopic modeling of plant water uptake in a forest stand involving root-mediated soil-water redistribution. Vadose Zone Journal, 12, 10.2136/vzj2012.0154. The research was supported by the Czech Science Foundation Project No. 14-15201J.

Hermetizing ability of the new obturating material for root canals «Real Seal» with «Resilon» technology

Directory of Open Access Journals (Sweden)

Makedonova Y.A.

2012-03-01

Full Text Available Simple, reliable and predictable obturation of root canals side by side with their cleaning and forming is an essential part of the endodontic treatment. The aim of this research is investigation of obturation density of root canals. Canals filled by means of lateral condensation of the new obturative system «Real Seal/Resilon» and by means of traditional method of canals obturation with the help of gutta-percha and sealer АН-plus. The results of the research proved a ligher hermetizing ability of the new experimental material «Real Seal» in comparison with obturation by means of gutta-percha pins. The obtained data reflects an objective picture and can be applied as a unique quality monitoring obturation of root canals.

The essential tension competition, cooperation and multilevel selection in evolution

CERN Document Server

Bahar, Sonya

2018-01-01

'The Essential Tension' explores how agents that naturally compete come to act together as a group. The author argues that the controversial concept of multilevel selection is essential to biological evolution, a proposition set to stimulate new debate. The idea of one collective unit emerging from the cooperative interactions of its constituent (and mutually competitive) parts has its roots in the ancient world. More recently, it has illuminated studies of animal behavior, and played a controversial role in evolutionary biology. In Part I, the author explores the historical development of the idea of a collectivity in biological systems, from early speculations on the sociology of human crowd behavior, through the mid-twentieth century debates over the role of group selection in evolution, to the notion of the selfish gene. Part II investigates the balance between competition and cooperation in a range of contemporary biological problems, from flocking and swarming to experimental evolution and the evolutio...

Differential effects of fine root morphology on water dynamics in the root-soil interface

Science.gov (United States)

DeCarlo, K. F.; Bilheux, H.; Warren, J.

2017-12-01

Soil water uptake form plants, particularly in the rhizosphere, is a poorly understood question in the plant and soil sciences. Our study analyzed the role of belowground plant morphology on soil structural and water dynamics of 5 different plant species (juniper, grape, maize, poplar, maple), grown in sandy soils. Of these, the poplar system was extended to capture drying dynamics. Neutron radiography was used to characterize in-situ dynamics of the soil-water-plant system. A joint map of root morphology and soil moisture was created for the plant systems using digital image processing, where soil pixels were connected to associated root structures via minimum distance transforms. Results show interspecies emergent behavior - a sigmoidal relationship was observed between root diameter and bulk/rhizosphere soil water content difference. Extending this as a proxy for extent of rhizosphere development with root age, we observed a logistic growth pattern for the rhizosphere: minimal development in the early stages is superceded by rapid onset of rhizosphere formation, which then stabilizes/decays with the likely root suberization. Dynamics analysis of water content differences between the root/rhizosphere, and rhizosphere/bulk soil interface highlight the persistently higher water content in the root at all water content and root size ranges. At the rhizosphere/bulk soil interface, we observe a shift in soil water dynamics by root size: in super fine roots, we observe that water content is primarily lower in the rhizosphere under wetter conditions, which then gradually increases to a relatively higher water content under drier conditions. This shifts to a persistently higher rhizosphere water content relative to bulk soil in both wet/dry conditions with increased root size, suggesting that, by size, the finest root structures may contribute the most to total soil water uptake in plants.

Root-zone temperature and water availability affect early root growth of planted longleaf pine

Science.gov (United States)

M.A. Sword

1995-01-01

Longleaf pine seedlings from three seed sources were exposed to three root-zone temperatures and three levels of water availability for 28 days. Root growth declined as temperature and water availability decreased. Root growth differed by seed source. Results suggest that subtle changes in the regeneration environment may influence early root growth of longleaf pine...

Water extraction and implications on soil moisture sensor placement in the root zone of banana

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Alisson Jadavi Pereira da Silva

Full Text Available ABSTRACT: The knowledge on spatial and temporal variations of soil water storage in the root zone of crops is essential to guide the studies to determine soil water balance, verify the effective zone of water extraction in the soil and indicate the correct region for the management of water, fertilizers and pesticides. The objectives of this study were: (i to indicate the zones of highest root activity for banana in different development stages; (ii to determine, inside the zone of highest root activity, the adequate position for the installation of soil moisture sensors. A 5.0 m3 drainage lysimeter was installed in the center of an experimental area of 320 m2. Water extraction was quantified inside the lysimeter using a 72 TDR probe. The concept of time stability was applied to indicate the position for sensor installation within the limits of effective water extraction. There are two patterns of water extraction distribution during the development of banana and the point of installation of sensors for irrigation management inside the zone of highest root activity is not constant along the crop development.

CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner.

Science.gov (United States)

Araya, Takao; Miyamoto, Mayu; Wibowo, Juliarni; Suzuki, Akinori; Kojima, Soichi; Tsuchiya, Yumiko N; Sawa, Shinichiro; Fukuda, Hiroo; von Wirén, Nicolaus; Takahashi, Hideki

2014-02-04

Morphological plasticity of root systems is critically important for plant survival because it allows plants to optimize their capacity to take up water and nutrients from the soil environment. Here we show that a signaling module composed of nitrogen (N)-responsive CLE (CLAVATA3/ESR-related) peptides and the CLAVATA1 (CLV1) leucine-rich repeat receptor-like kinase is expressed in the root vasculature in Arabidopsis thaliana and plays a crucial role in regulating the expansion of the root system under N-deficient conditions. CLE1, -3, -4, and -7 were induced by N deficiency in roots, predominantly expressed in root pericycle cells, and their overexpression repressed the growth of lateral root primordia and their emergence from the primary root. In contrast, clv1 mutants showed progressive outgrowth of lateral root primordia into lateral roots under N-deficient conditions. The clv1 phenotype was reverted by introducing a CLV1 promoter-driven CLV1:GFP construct producing CLV1:GFP fusion proteins in phloem companion cells of roots. The overaccumulation of CLE2, -3, -4, and -7 in clv1 mutants suggested the amplitude of the CLE peptide signals being feedback-regulated by CLV1. When CLE3 was overexpressed under its own promoter in wild-type plants, the length of lateral roots was negatively correlated with increasing CLE3 mRNA levels; however, this inhibitory action of CLE3 was abrogated in the clv1 mutant background. Our findings identify the N-responsive CLE-CLV1 signaling module as an essential mechanism restrictively controlling the expansion of the lateral root system in N-deficient environments.

Changes of Root Length and Root-to-Crown Ratio after Apical Surgery

DEFF Research Database (Denmark)

von Arx, Thomas; Jensen, Simon S; Bornstein, Michael M

2015-01-01

INTRODUCTION: Apical surgery is an important treatment option for teeth with post-treatment periodontitis. Although apical surgery involves root-end resection, no morphometric data are yet available about root-end resection and its impact on the root-to-crown ratio (RCR). The present study assess...

Deep rooting conferred by DEEPER ROOTING 1 enhances rice yield in paddy fields.

Science.gov (United States)

Arai-Sanoh, Yumiko; Takai, Toshiyuki; Yoshinaga, Satoshi; Nakano, Hiroshi; Kojima, Mikiko; Sakakibara, Hitoshi; Kondo, Motohiko; Uga, Yusaku

2014-07-03

To clarify the effect of deep rooting on grain yield in rice (Oryza sativa L.) in an irrigated paddy field with or without fertilizer, we used the shallow-rooting IR64 and the deep-rooting Dro1-NIL (a near-isogenic line homozygous for the Kinandang Patong allele of DEEPER ROOTING 1 (DRO1) in the IR64 genetic background). Although total root length was similar in both lines, more roots were distributed within the lower soil layer of the paddy field in Dro1-NIL than in IR64, irrespective of fertilizer treatment. At maturity, Dro1-NIL showed approximately 10% higher grain yield than IR64, irrespective of fertilizer treatment. Higher grain yield of Dro1-NIL was mainly due to the increased 1000-kernel weight and increased percentage of ripened grains, which resulted in a higher harvest index. After heading, the uptake of nitrogen from soil and leaf nitrogen concentration were higher in Dro1-NIL than in IR64. At the mid-grain-filling stage, Dro1-NIL maintained higher cytokinin fluxes from roots to shoots than IR64. These results suggest that deep rooting by DRO1 enhances nitrogen uptake and cytokinin fluxes at late stages, resulting in better grain filling in Dro1-NIL in a paddy field in this study.

External root resorption: Different etiologies explained from the composition of the human root-close periodontal membrane

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Inger Kjaer

2013-01-01

Full Text Available Introduction: This paper summarizes different conditions, which have a well-known influence on the resorption of tooth roots. It also highlights factors important for individual susceptibility to root resorption. Furthermore, the paper focuses on idiopathic root resorption where the provoking factor is not known. The Hypothesis: The several different disturbances causing root resorption can be either orthodontically provoked or acquired by trauma, virus or congenital diseases. It is presumed that all these conditions lead to inflammatory processes in the three main tissue layers, comprising the peri-root sheet. Evaluation of the Hypothesis: This paper explains how different etiologies behind root resorption and how different phenotypic traits in root resorption can be understood from immunohistochemical studies of the human periodontal membrane close to the root and thus, gain a new understanding of the phenomenon of root resorption.

Pea-root exudates and their effect upon root-nodule bacteria

NARCIS (Netherlands)

Egeraat, van A.W.S.M.

1972-01-01

The main purpose of this investigation was to study the exudation (mechanism, sites) of various compounds by roots of pea seedlings in relation to the growth of Rhizobium leguminosarum.

Chapter 1 gives a survey of the literature pertaining to plant-root

Uncovering genes and ploidy involved in the high diversity in root hair density, length and response to local scarce phosphate in Arabidopsis thaliana.

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Markus G Stetter

Full Text Available Plant root hairs increase the root surface to enhance the uptake of sparingly soluble and immobile nutrients, such as the essential nutrient phosphorus, from the soil. Here, root hair traits and the response to scarce local phosphorus concentration were studied in 166 accessions of Arabidopsis thaliana using split plates. Root hair density and length were correlated, but highly variable among accessions. Surprisingly, the well-known increase in root hair density under low phosphorus was mostly restricted to genotypes that had less and shorter root hairs under P sufficient conditions. By contrast, several accessions with dense and long root hairs even had lower hair density or shorter hairs in local scarce phosphorus. Furthermore, accessions with whole-genome duplications developed more dense but phosphorus-insensitive root hairs. The impact of genome duplication on root hair density was confirmed by comparing tetraploid accessions with their diploid ancestors. Genome-wide association mapping identified candidate genes potentially involved in root hair responses tp scarce local phosphate. Knock-out mutants in identified candidate genes (CYR1, At1g32360 and RLP48 were isolated and differences in root hair traits in the mutants were confirmed. The large diversity in root hair traits among accessions and the diverse response when local phosphorus is scarce is a rich resource for further functional analyses.

Proteomics of Maize Root Development.

Science.gov (United States)

Hochholdinger, Frank; Marcon, Caroline; Baldauf, Jutta A; Yu, Peng; Frey, Felix P

2018-01-01

Maize forms a complex root system with structurally and functionally diverse root types that are formed at different developmental stages to extract water and mineral nutrients from soil. In recent years proteomics has been intensively applied to identify proteins involved in shaping the three-dimensional architecture and regulating the function of the maize root system. With the help of developmental mutants, proteomic changes during the initiation and emergence of shoot-borne, lateral and seminal roots have been examined. Furthermore, root hairs were surveyed to understand the proteomic changes during the elongation of these single cell type structures. In addition, primary roots have been used to study developmental changes of the proteome but also to investigate the proteomes of distinct tissues such as the meristematic zone, the elongation zone as well as stele and cortex of the differentiation zone. Moreover, subcellular fractions of the primary root including cell walls, plasma membranes and secreted mucilage have been analyzed. Finally, the superior vigor of hybrid seedling roots compared to their parental inbred lines was studied on the proteome level. In summary, these studies provide novel insights into the complex proteomic interactions of the elaborate maize root system during development.

Proteomics of Maize Root Development

Directory of Open Access Journals (Sweden)

Frank Hochholdinger

2018-03-01

Full Text Available Maize forms a complex root system with structurally and functionally diverse root types that are formed at different developmental stages to extract water and mineral nutrients from soil. In recent years proteomics has been intensively applied to identify proteins involved in shaping the three-dimensional architecture and regulating the function of the maize root system. With the help of developmental mutants, proteomic changes during the initiation and emergence of shoot-borne, lateral and seminal roots have been examined. Furthermore, root hairs were surveyed to understand the proteomic changes during the elongation of these single cell type structures. In addition, primary roots have been used to study developmental changes of the proteome but also to investigate the proteomes of distinct tissues such as the meristematic zone, the elongation zone as well as stele and cortex of the differentiation zone. Moreover, subcellular fractions of the primary root including cell walls, plasma membranes and secreted mucilage have been analyzed. Finally, the superior vigor of hybrid seedling roots compared to their parental inbred lines was studied on the proteome level. In summary, these studies provide novel insights into the complex proteomic interactions of the elaborate maize root system during development.

ROOT Tutorial for Summer Students

CERN Multimedia

CERN. Geneva; Piparo, Danilo

2015-01-01

ROOT is a "batteries-included" tool kit for data analysis, storage and visualization. It is widely used in High Energy Physics and other disciplines such as Biology, Finance and Astrophysics. This event is an introductory tutorial to ROOT and comprises a front lecture and hands on exercises. IMPORTANT NOTE: The tutorial is based on ROOT 6.04 and NOT on the ROOT5 series.  IMPORTANT NOTE: if you have ROOT 6.04 installed on your laptop, you will not need to install any virtual machine. The instructions showing how to install the virtual machine on which you can find ROOT 6.04 can be found under "Material" on this page.

Effect of amino acid substitution of CAPRICE on cell-to-cell movement ability in Arabidopsis root epidermis.

Science.gov (United States)

Tominaga-Wada, Rumi; Wada, Takuji

2018-03-01

An R3-type MYB transcription factor, CAPRICE (CPC), is known to promote root hair cell differentiation in Arabidopsis root epidermis. The CPC protein moves from non-hair cells to the neighboring cells, and acts as an inducer of root hair formation. In contrast, we previously showed that the CPC homolog, ENHANCER OF TRY AND CPC1 (ETC1), does not move between the root epidermal cells. To clarify the critical difference in the cell-to-cell movement ability of CPC and ETC1 proteins, we generated five different chimeras of CPC and ETC1. As expected, four of the five chimeric proteins with substitution of CPC amino acids with those of ETC1 induced many root hair and no-trichome phenotype, like CPC. These chimeric proteins essentially maintained the cell-to-cell movement ability of CPC. However, one chimeric protein in which ETC1 was sandwiched between the CPC-specific movement motifs of S1 and S2 did not induce ectopic root hair formation. This chimeric protein did not move between the cells. These results indicate that the maintenance of not only the S1 and S2 motifs but also the precise structure of CPC protein might be necessary for the cell-to-cell movement of CPC. Our results should help in further unraveling of the roles of these MYB transcription factors in root hair formation. Copyright © 2018 Elsevier Inc. All rights reserved.

A study of root canal morphology of human primary incisors and molars using cone beam computerized tomography: an in vitro study.

Science.gov (United States)

Gaurav, Vivek; Srivastava, Nikhil; Rana, Vivek; Adlakha, Vivek Kumar

2013-01-01

Variations in morphology of root canals in primary teeth usually leads to complications during and after endodontic therapy. To improve the success in endodontics, a thorough knowledge of the root canal morphology is essential. The aim of this study was to assess the variation in number and morphology of the root canals of primary incisors and molars and to study the applicability of cone beam computerized tomography (CBCT) in assessing the same. A total of 60 primary molars and incisors with full root length were collected and various parameters such as the number of roots, number of canals, diameter of root canal at cementoenamel junction and middle-third, length and angulations of roots of primary molars and incisors were studied using CBCT. The observations were put to descriptive statistics to find out the frequency, mean, standard deviation and range for all four subgroups. Further, unpaired t-test was used to compare these parameters between subgroups and analysis of variance test was implemented to evaluate the parameters within the subgroups. The CBCT showed the presence of bifurcation of root canal at middle third in 13% of mandibular incisors while 20% of mandibular molars had two canals in distal root. The diameter of distobuccal root canal of maxillary molars and mesiolingual canal of mandibular molars was found to be minimum. CBCT is a relatively new and effective technology, which provides an auxiliary imaging modality to supplement conventional radiography for assessing the variation in root canal morphology of primary teeth.

Endoscopic root canal treatment.

Science.gov (United States)

Moshonov, Joshua; Michaeli, Eli; Nahlieli, Oded

2009-10-01

To describe an innovative endoscopic technique for root canal treatment. Root canal treatment was performed on 12 patients (15 teeth), using a newly developed endoscope (Sialotechnology), which combines an endoscope, irrigation, and a surgical microinstrument channel. Endoscopic root canal treatment of all 15 teeth was successful with complete resolution of all symptoms (6-month follow-up). The novel endoscope used in this study accurately identified all microstructures and simplified root canal treatment. The endoscope may be considered for use not only for preoperative observation and diagnosis but also for active endodontic treatment.

On the road to quantitative genetic/genomic analyses of root growth and development components underlying root architecture

International Nuclear Information System (INIS)

Draye, X.; Dorlodot, S. de; Lavigne, T.

2006-01-01

The quantitative genetic and functional genomic analyses of root development, growth and plasticity will be instrumental in revealing the major regulatory pathways of root architecture. Such knowledge, combined with in-depth consideration of root physiology (e.g. uptake, exsudation), form (space-time dynamics of soil exploration) and ecology (including root environment), will settle the bases for designing root ideotypes for specific environments, for low-input agriculture or for successful agricultural production with minimal impact on the environment. This report summarizes root research initiated in our lab between 2000 and 2004 in the following areas: quantitative analysis of root branching in bananas, high throughput characterisation of root morphology, image analysis, QTL mapping of detailed features of root architecture in rice, and attempts to settle a Crop Root Research Consortium. (author)

Assisted phytoremediation of heavy metal contaminated soil from a mined site with Typha latifolia and Chrysopogon zizanioides.

Science.gov (United States)

Anning, Alexander Kofi; Akoto, Ruth

2018-02-01

Chemically assisted phytoremediation is fast gaining attention as a biotechnology to accelerate heavy metal removal from contaminated substrates, but how different chemical amendments affect the process remains an important research question. Here, bioaccumulation factor (BAF), translocation factor (TF), removal efficiency (RE) and uptake of Hg, As, Pb, Cu and Zn by cattail (Typha latifolia) and vetiver (Chrysopogon zizanioides) were quantified in a potted experiment to determine the effects of amendments on the phytoremediation success. Baseline concentrations of heavy metals within the studied mined site were determined. The experiment involved three soil treatments (each comprising 16 samples amended with 0.05mol/L ethylene di-aminetetraacetic acid (EDTA), 3g of aluminum sulfate [Al 2 (SO 4 ) 3 ], and unamended control) transplanted with equal numbers of vetiver and cattail. Growth performance (height) of plant species was monitored every two weeks. Sixteen weeks after transplanting, heavy metal levels in plant and soil samples were quantified following standard protocols, and the biomass and root length measured for each plant species. Results indicated strong negative impact of mining activities on heavy metal levels of soil in the study area. Soil amendment considerably enhanced the BAF, TF, RE and uptake but the effect varied with plant species and heavy metal in question. The amendment also stimulated strong positive correlation between RE and BAF, TF and metal uptake, and generally did not show any negative effects on plant growth performance. In general, soil amendment aided the accumulation and translocation of heavy metals in the plant species studied, and could be explored for cleaning up contaminated sites. Copyright © 2017 Elsevier Inc. All rights reserved.

Simulating root carbon storage with a coupled carbon — Water cycle root model

Science.gov (United States)

Kleidon, A.; Heimann, M.

1996-12-01

Is it possible to estimate carbon allocation to fine roots from the water demands of the vegetation? We assess this question by applying a root model which is based on optimisation principles. The model uses a new formulation of water uptake by fine roots, which is necessary to explicitly take into account the highly dynamic and non-steady process of water uptake. Its carbon dynamics are driven by maximising the water uptake while keeping maintenance costs at a minimum. We apply the model to a site in northern Germany and check averaged vertical fine root biomass distribution against measured data. The model reproduces the observed values fairly well and the approach seems promising. However, more validation is necessary, especially on the predicted dynamics of the root biomass.

Growth response of Casuarina equisetifolia Forst. rooted stem cuttings to Frankia in nursery and field conditions.

Science.gov (United States)

Karthikeyan, A; Chandrasekaran, K; Geetha, M; Kalaiselvi, R

2013-11-01

Casuarina equisetifolia Forst. is a tree crop that provides fuel wood, land reclamation, dune stabilization, and scaffolding for construction, shelter belts, and pulp and paper production. C. equisetifolia fixes atmospheric nitrogen through a symbiotic relationship with Frankia, a soil bacterium of the actinobacteria group. The roots of C. equisetifolia produce root nodules where the bacteria fix atmospheric nitrogen, which is an essential nutrient for all plant metabolic activities. However, rooted stem cuttings of elite clones of C. equisetifolia by vegetative propagation is being planted by the farmers of Pondicherry as costeffective method. As the vegetative propagation method uses inert material (vermiculite) for rooting there is no chance for Frankia association. Therefore after planting of these stocks the farmers are applying 150 kg of di-ammonium phosphate (DAP)/acre/year. To overcome this fertilizer usage, the Frankia-inoculated rooted stem cuttings were propagated under nursery conditions and transplanted in the nutrient-deficient soils of Karaikal, Pondicherry (India), in this study. Under nursery experiments the growth and biomass of C. equisetifolia rooted stem cuttings inoculated with Frankia showed 3 times higher growth and biomass than uninoculated control. These stocks were transplanted and monitored for their growth and survival for 1 year in the nutrient-deficient farm land. The results showed that the rooted stem cuttings of C. equisetifolia significantly improved growth in height (8.8 m), stem girth (9.6 cm) and tissue nitrogen content (3.3 mg g-1) than uninoculated controls. The soil nutrient status was also improved due to inoculation of Frankia.

Physical root-soil interactions

Science.gov (United States)

Kolb, Evelyne; Legué, Valérie; Bogeat-Triboulot, Marie-Béatrice

2017-12-01

Plant root system development is highly modulated by the physical properties of the soil and especially by its mechanical resistance to penetration. The interplay between the mechanical stresses exerted by the soil and root growth is of particular interest for many communities, in agronomy and soil science as well as in biomechanics and plant morphogenesis. In contrast to aerial organs, roots apices must exert a growth pressure to penetrate strong soils and reorient their growth trajectory to cope with obstacles like stones or hardpans or to follow the tortuous paths of the soil porosity. In this review, we present the main macroscopic investigations of soil-root physical interactions in the field and combine them with simple mechanistic modeling derived from model experiments at the scale of the individual root apex.

Research on Chemical Composition and Biological Properties Including Antiquorum Sensing Activity of Angelica pancicii Vandas Aerial Parts and Roots.

Science.gov (United States)

Mileski, Ksenija S; Trifunović, Snežana S; Ćirić, Ana D; Šakić, Željana M; Ristić, Mihailo S; Todorović, Nina M; Matevski, Vlado S; Marin, Petar D; Tešević, Vele V; Džamić, Ana M

2017-12-20

The essential oil, different extracts, and isolated compounds of Angelica pancicii Vandas (Apiaceae) were investigated for the first time. The GC-FID and GC-MS analyses revealed sesquiterpenoids as the main constituents of A. pancicii essential oil of aerial parts with bornyl acetate (8.08%), n-octanol (5.82%), kessane (4.26%), and β-selinene (4.26%) as the main constituents. Analysis of methanol extracts, using an HPLC-DAD/ESI-ToF-MS system, showed a total of 52 compounds in the aerial parts and 53 in the roots, indicating coumarins as the main constituents. In addition, new chromone (1) and six known furanocoumarins (2-7) were isolated from the roots and structurally elucidated by combined spectroscopic methods. The aerial part extracts exhibited higher polyphenolic contents and antioxidant activity evaluated by three radical scavenging assays. Using a microwell dilution method, the strongest antibacterial activity profiles were determined for ethanol and methanol root extracts (minimum bactericidal concentrations (MBCs) = 0.25-3.00 mg/mL), which were comparable to the activity of streptomycin (MBCs = 0.34-1.24 mg/mL), while the strongest antibacterial compound of A. pancicii was oxypeucedanin hydrate (MBCs = 0.50-8.00 mg/mL). Antifungal potential was in moderate extent, and the highest activity was obtained for root methanol extract (minimum fungicidal concentrations (MFCs) = 4.00-14.00 mg/mL). Tested sub-minimum inhibitory concentrations (subMICs) of the extracts and isolated compounds inhibited selected Pseudomonas aeruginosa PAO1 virulence determinants. The most reduced growth of P. aeruginosa colony was in the presence of isolated oxypeucedanin. Ethanol (17.36-46.98%) and methanol (34.54-52.43%) root extracts showed higher anti-biofilm activity compared to streptomycin (49.40-88.36%) and ampicillin (56.46-92.16%).

Root-Cause Analysis of Persistently High Maternal Mortality in a Rural District of Indonesia: Role of Clinical Care Quality and Health Services Organizational Factors

Directory of Open Access Journals (Sweden)

Mohammad Afzal Mahmood

2018-01-01

Full Text Available Background. Despite significant reduction in maternal mortality, there are still many regions in the world that suffer from high mortality. District Kutai Kartanegara, Indonesia, is one such region where consistently high maternal mortality was observed despite high rate of delivery by skilled birth attendants. Method. Thirty maternal deaths were reviewed using verbal autopsy interviews, terminal event reporting, medical records’ review, and Death Audit Committee reports, using a comprehensive root-cause analysis framework including Risk Identification, Signal Services, Emergency Obstetrics Care Evaluation, Quality, and 3 Delays. Findings. The root causes were found in poor quality of care, which caused hospital to be unprepared to manage deteriorating patients. In hospital, poor implementation of standard operating procedures was rooted in inadequate skills, lack of forward planning, ineffective communication, and unavailability of essential services. In primary care, root causes included inadequate risk management, referrals to facilities where needed services are not available, and lack of coordination between primary healthcare and hospitals. Conclusion. There is an urgent need for a shift in focus to quality of care through knowledge, skills, and support for consistent application of protocols, making essential services available, effective risk assessment and management, and facilitating timely referrals to facilities that are adequately equipped.

Root Hydraulics and Root Sap Flow in a Panamanian Low-Land Tropical Forest

Science.gov (United States)

Bretfeld, M.; Ewers, B. E.; Hall, J. S.; Ogden, F. L.; Beverly, D.; Speckman, H. N.

2017-12-01

In the tropics, trees are subjected to increasingly frequent and severe droughts driven by climate change. Given the hydrological benefits associated with tropical forests, such as reduced peak runoff during high precipitation events and increased base flow during drought periods ("sponge-effect"), the underlying plant-hydrological processes at the soil-plant interface have become the focus of recent research efforts. In Panama, the 2015/16 El Niño-Southern Oscillation (ENSO) event ranks amongst the driest and hottest periods on record, thus providing an excellent opportunity to study the effects of drought on tropical forests. Starting in 2015, we instrumented 76 trees with heat-ratio sap flow sensors in regrowing secondary forest (8-, 25-, and 80-year old stands) in the 15 km2 Agua Salud study area, located in central Panama. Of those trees, 16 individuals were instrumented with additional sap flow sensors on three roots each. Data were logged every 30 minutes and soil moisture was measured at 10, 30, 50, and 100 cm depth. Meteorological data were taken from a nearby met-station. Rooting depth and root density were assessed in eight 2×2×2 m soil pits. In April 2017, we measured hydraulic conductance and vulnerability to cavitation of eight species using the centrifuge technique. Trees in 8-year old forest limited transpiration during the drought whereas no such limitation was evident in trees of the 80-year old forest. Root sap flow data show seasonal shifts in water uptake between individual roots of a given tree, with sap flow decreasing in some roots while simultaneously increasing in other roots during the wet-dry season transition. Roots followed a typical log distribution along the profile, with overall root densities of 46, 43, and 52 roots m-2 in the 8-, 25-, and 80-yo stand, respectively. Roots were found up to 200 cm depth in all forests, with roots >5 cm occurring at lower depths (>125 cm) only in 25- and 80-year old forests. Maximum hydraulic

The "Green" Root Beer Laboratory

Science.gov (United States)

Clary, Renee; Wandersee, James

2010-01-01

No, your students will not be drinking green root beer for St. Patrick's Day--this "green" root beer laboratory promotes environmental awareness in the science classroom, and provides a venue for some very sound science content! While many science classrooms incorporate root beer-brewing activities, the root beer lab presented in this article has…

Analysis of gene expression profiles for cell wall modifying proteins and ACC synthases in soybean cyst nematode colonized roots, adventitious rooting hypocotyls, root tips, flooded roots, and IBA and ACC treatment roots

Science.gov (United States)

We hypothesized that soybean cyst nematode (SCN) co-opts a part or all of one or more innate developmental process in soybean to establish its feeding structure, syncytium, in soybean roots. The syncytium in soybean roots is formed in a predominantly lateral direction within the vascular bundle by ...

Using coloured roots to study root interaction and competition in intercropped legumes and non-legumes

DEFF Research Database (Denmark)

Tosti, Giacomo; Thorup-Kristensen, Kristian

2010-01-01

if a species with coloured roots can be used to examine the interaction in a legume-non-legume intercropping system; (ii) to verify the importance of initial root growth on the successive root development of mixture component plants; (iii) to test if the root interaction in the shallow layers has consequences...

Volatile Constituents of Valeriana hardwickii Wall. Root Oil from Arunachal Pradesh, Eastern Himalaya

Directory of Open Access Journals (Sweden)

Jayashankar Das

2011-01-01

Full Text Available The composition of the essential oil extracted from Valeriana hardwickii Wall. roots growing wild in Talle Valley of Arunachal Pradesh, Eastern Himalaya was analyzed by capillary GC and GC/MS. Thirty-one compounds representing 89.6% of the total oil were identified. The oil was found to be rich in sesquiterpenes from which oxygenated sesquiterpenes (25.7%. Methyl linoleate (21.1% and Valeracetate (11.6% were the major constituents present in the oil. Whereas, Bornyl acetate (11.2% and α-Terpinyl acetate (4.7% were the only oxygenated monoterpenes identified in the investigated sample. Essential oil and its constituents of V. hardwickii may be used as the substitute of highly traded Indian Valerian (V. jatamansi and European V. officinalis.

Removal of root filling materials.

LENUS (Irish Health Repository)

Duncan, H.F. Chong, B.S.

2011-05-01

Safe, successful and effective removal of root filling materials is an integral component of non-surgical root canal re-treatment. Access to the root canal system must be achieved in order to negotiate to the canal terminus so that deficiencies in the original treatment can be rectified. Since a range of materials have been advocated for filling root canals, different techniques are required for their removal. The management of commonly encountered root filling materials during non-surgical re-treatment, including the clinical procedures necessary for removal and the associated risks, are reviewed. As gutta-percha is the most widely used and accepted root filling material, there is a greater emphasis on its removal in this review.

Inhibitory Effects of Thai Essential Oils on Potentially Aflatoxigenic Aspergillus parasiticus and Aspergillus flavus.

Science.gov (United States)

Jantapan, Kittika; Poapolathep, Amnart; Imsilp, Kanjana; Poapolathep, Saranya; Tanhan, Phanwimol; Kumagai, Susumu; Jermnak, Usuma

2017-01-01

　The antiaflatoxigenic and antifungal activities of essential oils (EOs) of finger root (Boesenbergia rotunda (L.) Mansf.), pine (Pinus pinaster), rosewood (Aniba rosaedora), Siam benzoin (Styrax tonkinensis), Thai moringa (Moringa oleifera), and ylang ylang (Cananga odorata) were tested for Aspergillus parasiticus and Aspergillus flavus in potato dextrose broth. Aflatoxin B 1 (AFB 1 ) was extracted from culture using a QuEChERS-based extraction procedure and analyzed with high performance liquid chromatography (HPLC) coupled to a fluorescence detector. EO of pine showed the greatest inhibition of growth and AFB 1 production of A. parasiticus, followed by EOs of rosewood, finger root, Siam benzoin, and ylang ylang. EO of finger root gave the best inhibitory effects on A. flavus, followed by EOs of rosewood, pine, ylang ylang, and Siam benzoin. EO of Thai moringa did not show any significant inhibition of aflatoxigenic fungi. The antiaflatoxigenic activities of EOs correlated with their antifungal activities in the dosedependent manner. Comparison of the application of the five selected EOs in peanut pods by direct and vapor exposure indicated that the AFB 1 production inhibitory effects of the five EOs by direct exposure were faster and more effective than by vapor exposure. EO of finger root showed the best inhibition of AFB 1 production of A. flavus in peanut pods by direct exposure, followed by EOs of pine, rosewood, ylang ylang, and Siam benzoin.

Tree-root control of shallow landslides

Science.gov (United States)

Cohen, Denis; Schwarz, Massimiliano

2017-08-01

Tree roots have long been recognized to increase slope stability by reinforcing the strength of soils. Slope stability models usually include the effects of roots by adding an apparent cohesion to the soil to simulate root strength. No model includes the combined effects of root distribution heterogeneity, stress-strain behavior of root reinforcement, or root strength in compression. Recent field observations, however, indicate that shallow landslide triggering mechanisms are characterized by differential deformation that indicates localized activation of zones in tension, compression, and shear in the soil. Here we describe a new model for slope stability that specifically considers these effects. The model is a strain-step discrete element model that reproduces the self-organized redistribution of forces on a slope during rainfall-triggered shallow landslides. We use a conceptual sigmoidal-shaped hillslope with a clearing in its center to explore the effects of tree size, spacing, weak zones, maximum root-size diameter, and different root strength configurations. Simulation results indicate that tree roots can stabilize slopes that would otherwise fail without them and, in general, higher root density with higher root reinforcement results in a more stable slope. The variation in root stiffness with diameter can, in some cases, invert this relationship. Root tension provides more resistance to failure than root compression but roots with both tension and compression offer the best resistance to failure. Lateral (slope-parallel) tension can be important in cases when the magnitude of this force is comparable to the slope-perpendicular tensile force. In this case, lateral forces can bring to failure tree-covered areas with high root reinforcement. Slope failure occurs when downslope soil compression reaches the soil maximum strength. When this occurs depends on the amount of root tension upslope in both the slope-perpendicular and slope-parallel directions. Roots

Treatment of a horizontal root-fractured tooth with decoronation procedure: case report

Directory of Open Access Journals (Sweden)

Selen Esin Yoldaş

2016-05-01

Full Text Available INTRODUCTION: Early loss of permanent anterior teeth due to trauma can cause esthetic and functional problems for young patients. In such cases, replacement of the missing tooth with traditional approaches is possible; however such approaches will reduce the chance of the patient to receive an esthetic and consistent treatment in the future. CASE REPORT: A 12-year-old male patient referred to our clinic with a history of trauma. Complicated crown fracture in tooth no.11 and horizontal root fracture in tooth no. 21 was detected. Following root canal treatment, tooth no. 11 was restored with a fiber post and a strip crown. To avoid alveolar bone loss due to early tooth extraction, decoronation procedure, an alternative approach, was applied to tooth no. 21. This procedure consisted of leaving the root fragment inside the alveolar socket following the removal of the crown. For the rehabilitation of the missing crown, a partial removable prosthesis was implemented. The patient was recalled in 6., 12. and 18. months. Within the follow-up period, no reduction in the alveolar bone level was seen. No sign of infection was evident. The remaining root fragment kept on resorbing. Tooth no. 11 remained symptom-free as well. The patient is still being followed. CONCLUSION: Decoronation is essentially a treatment choice for preventing alveolar bone loss in ankylosed teeth considered for extraction. In this case report, decoronation was shown to be a suitable alternative also for a fractured, non-ankylosed tooth.

Effect of localized nitrogen availability to soybean half-root systems on photosynthate partitioning to roots and nodules

International Nuclear Information System (INIS)

Singleton, P.W.; van Kessel, C.

1987-01-01

Soybean (Glycine max [L.] Merr. cv Davis) was grown in a split-root growth system designed to maintain control of the root atmosphere. Two experiments were conducted to examine how 80% Ar:20%, O 2 (Ar:O 2 ) and air (Air) atmospheres affected N assimilation (NH 4 NO 3 and N 2 fixation) and the partitioning of photosynthate to roots and nodules. Application of NH 4 NO 3 to nonnodulated half-root systems enhanced root growth and root respiration at the site of application. A second experiment applied Ar:O 2 or air to the two sides of nodulated soybean half-root systems for 11 days in the following combinations: (a) Air to both sides (Air/Air); (b) Air to one side, Ar:O 2 to the other (Air/Ar:O 2 ), and (c) Ar:O 2 to both sides (Ar:O 2 /Ar:O 2 ). Results indicated that dry matter and current photosynthate ( 14 C) were selectively partitioned to nodules and roots where N 2 was available. Both root and nodule growth on the Air side of Air/Ar:O 2 plants was significantly greater than the Ar:O 2 side. The relative partitioning of carbon and current photosynthate between roots and nodules on a half-root system was also affected by N 2 availability. The Ar:O 2 sides partitioned relatively more current photosynthate to roots (57%) than nodules (43%), while N 2 -fixing root systems partitioned 36 and 64% of the carbon to roots and nodules, respectively. The Ar:O 2 atmosphere decreased root and nodule respiration by 80% and nitrogenase activity by 85% compared to half-root systems in Air while specific nitrogenase activity in Ar:O 2 was 50% of nodules supplied Air. Results indicated that nitrogen assimilation, whether from N 2 fixation or inorganic sources, had a localized effect on root development

Root tips moving through soil

Science.gov (United States)

Curlango-Rivera, Gilberto

2011-01-01

Root elongation occurs by the generation of new cells from meristematic tissue within the apical 1–2 mm region of root tips. Therefore penetration of the soil environment is carried out by newly synthesized plant tissue, whose cells are inherently vulnerable to invasion by pathogens. This conundrum, on its face, would seem to reflect an intolerable risk to the successful establishment of root systems needed for plant life. Yet root tip regions housing the meristematic tissues repeatedly have been found to be free of microbial infection and colonization. Even when spore germination, chemotaxis, and/or growth of pathogens are stimulated by signals from the root tip, the underlying root tissue can escape invasion. Recent insights into the functions of root border cells, and the regulation of their production by transient exposure to external signals, may shed light on long-standing observations. PMID:21455030

Valve-sparing root replacement in children with aortic root aneurysm: mid-term results.

Science.gov (United States)

Lange, Rüdiger; Badiu, Catalin C; Vogt, Manfred; Voss, Bernhard; Hörer, Jürgen; Prodan, Zsolt; Schreiber, Christian; Mazzitelli, Domenico

2013-05-01

We aimed at evaluating the results of aortic valve-sparing root replacement (AVSRR) in children with aortic root aneurysm (ARA) due to genetic disorders in terms of mortality, reoperation and recurrent aortic valve regurgitation (AVR). Thirteen patients (mean age 9.7 ± 6.5 years, 10 months-18 years) underwent AVSRR for ARA between 2002 and 2011. Six of the 13 patients had Marfan syndrome, 3 Loeys-Dietz syndrome (LDS), 2 bicuspid aortic valve syndrome and 2 an unspecified connective tissue disorder. AVR was graded as none/trace, mild and severe in 5, 7 and 1 patient, respectively. The mean pre-operative root diameter was 45 ± 10 mm (mean Z-score 10.3 ± 2.0). Remodelling of the aortic root was performed in 4 patients, reimplantation of the aortic valve in 9 and a concomitant cusp repair in 4. The diameter of the prostheses used for root replacement varied from 22 to 30 mm (mean Z-score = 2.3 ± 3). The follow-up was 100% complete with a mean follow-up time of 3.7 years. There was no operative mortality. One patient with LDS died 2.5 years after the operation due to spontaneous rupture of the descending aorta. Root re-replacement with mechanical conduit was necessary in 1 patient for severe recurrent AVR 8 days after remodelling of the aortic root. At final follow-up, AVR was graded as none/trace and mild in all patients. Eleven patients presented in New York Heart Association functional Class I and 1 in Class II. In paediatric patients with ARA, valve-sparing root replacement can be performed with low operative risk and excellent mid-term valve durability. Hence, prosthetic valve-related morbidity may be avoided. Due to the large diameters of the aortic root and the ascending aorta, the size of the implanted root prostheses will not limit later growth of the native aorta.

Exogenous nitrate induces root branching and inhibits primary root growth in Capsicum chinense Jacq.

Science.gov (United States)

Celis-Arámburo, Teresita de Jesús; Carrillo-Pech, Mildred; Castro-Concha, Lizbeth A; Miranda-Ham, María de Lourdes; Martínez-Estévez, Manuel; Echevarría-Machado, Ileana

2011-12-01

The effects of nitrate (NO₃⁻) on the root system are complex and depend on several factors, such as the concentration available to the plant, endogenous nitrogen status and the sensitivity of the species. Though these effects have been widely documented on Arabidopsis and cereals, no reports are available in the Capsicum genus. In this paper, we have determined the effect of an exogenous in vitro application of this nutrient on root growth in habanero pepper (Capsicum chinense Jacq.). Exposure to NO₃⁻ inhibited primary root growth in both, dose- and time-dependent manners. The highest inhibition was attained with 0.1 mM NO₃⁻ between the fourth and fifth days of treatment. Inhibition of primary root growth was observed by exposing the root to both homogeneous and heterogeneous conditions of the nutrient; in contrast, ammonium was not able to induce similar changes. NO₃⁻-induced inhibition of primary root growth was reversed by treating the roots with IAA or NPA, a polar auxin transport inhibitor. Heterogeneous NO₃⁻ application stimulated the formation and elongation of lateral roots in the segment where the nutrient was present, and this response was influenced by exogenous phytohormones. These results demonstrate that habanero pepper responds to NO₃⁻ in a similar fashion to other species with certain particular differences. Therefore, studies in this model could help to elucidate the mechanisms by which roots respond to NO₃⁻ in fluctuating soil environments. Copyright © 2011 Elsevier Masson SAS. All rights reserved.

Regrowth of Cirsium arvense from intact roots and root fragments at different soil depths

Directory of Open Access Journals (Sweden)

Thomsen, Mette Goul

2014-02-01

Full Text Available In the present work we measured the shoot rate from intact roots and from root fragments of Cirsium arvense at different digging depths and the number of leaves were used as estimate of minimum regenerative capacity. The experiments were performed on four sites with three or four repetitions of each treatment. On each site plot, the soil was removed down to a given depth within a 1 x 1 m square. All plant parts was excavated from the soil and the soil was either replaced without any root material, or roots of C. arvense was cut into 10 cm long fragments and replaced into the source hole. Shoot number, aboveground biomass and number of leaves were measured. Digging depth and time explained 50% - 60% of the variation in biomass (P<0.001. Replacement of root fragments increased the shoot number in one out of four treatments but did not affect biomass produced compared to production from undisturbed root systems. Number of leaves showed that shoots from all digging depths passed the level of minimum regenerative capacity. We conclude that the intact root system from all depths was able to regenerate within one season and it has a high contribution to the produced biomass compared with root fragments in the upper soil layers.

Decreased levels of matrix metalloproteinase-2 in root-canal exudates during root canal treatment.

Science.gov (United States)

Pattamapun, Kassara; Handagoon, Sira; Sastraruji, Thanapat; Gutmann, James L; Pavasant, Prasit; Krisanaprakornkit, Suttichai

2017-10-01

To determine the matrix metalloproteinase-2 (MMP-2) levels in root-canal exudates from teeth undergoing root-canal treatment. The root-canal exudates from six teeth with normal pulp and periradicular tissues that required intentional root canal treatment for prosthodontic reasons and from twelve teeth with pulp necrosis and asymptomatic apical periodontitis (AAP) were sampled with paper points for bacterial culture and aspirated for the detection of proMMP-2 and active MMP-2 by gelatin zymography and the quantification of MMP-2 levels by ELISA. By gelatin zymography, both proMMP-2 and active MMP-2 were detected in the first collection of root-canal exudates from teeth with pulp necrosis and AAP, but not from teeth with normal pulp, and their levels gradually decreased and disappeared at the last collection. Consistently, ELISA demonstrated a significant decrease in MMP-2 levels in the root-canal exudates of teeth with pulp necrosis and AAP following root canal procedures (papical lesions, similar to the clinical application of MMP-8 as a biomarker. Copyright © 2017 Elsevier Ltd. All rights reserved.

ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.

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Chul Min Kim

2016-08-01

Full Text Available Genes encoding ROOT HAIR DEFECTIVE SIX-LIKE (RSL class I basic helix loop helix proteins are expressed in future root hair cells of the Arabidopsis thaliana root meristem where they positively regulate root hair cell development. Here we show that there are three RSL class I protein coding genes in the Brachypodium distachyon genome, BdRSL1, BdRSL2 and BdRSL3, and each is expressed in developing root hair cells after the asymmetric cell division that forms root hair cells and hairless epidermal cells. Expression of BdRSL class I genes is sufficient for root hair cell development: ectopic overexpression of any of the three RSL class I genes induces the development of root hairs in every cell of the root epidermis. Expression of BdRSL class I genes in root hairless Arabidopsis thaliana root hair defective 6 (Atrhd6 Atrsl1 double mutants, devoid of RSL class I function, restores root hair development indicating that the function of these proteins has been conserved. However, neither AtRSL nor BdRSL class I genes is sufficient for root hair development in A. thaliana. These data demonstrate that the spatial pattern of class I RSL activity can account for the pattern of root hair cell differentiation in B. distachyon. However, the spatial pattern of class I RSL activity cannot account for the spatial pattern of root hair cells in A. thaliana. Taken together these data indicate that that the functions of RSL class I proteins have been conserved among most angiosperms-monocots and eudicots-despite the dramatically different patterns of root hair cell development.

[Root canal treatment of mandibular first premolar with 4 root canals: a case report].

Science.gov (United States)

Liu, Xin-yang; Zhan, Fu-Liang

2015-10-01

The mandibular first premolar can be considered one of the most challenging teeth to treat, due to the complexity of its root canal morphology and increased incidence of multiple canals. A case of endodontic treatment of a mandibular first premolar exhibiting a total of 4 distinct root canals and 4 apical foramina was described. Anatomic variation of root canal morphology should be considered in endodontic treatment to ensure a favorable healing outcome, and its identification could be enhanced by careful examination using a dental operating microscope. Obturation of root canals using a warm vertical compaction technique with a highly-radiopaque root canal sealer, such as AH Plus, after careful ultrasonic activated irrigation might allow the flow of sealer into the narrowed but unprepared part of the canal, thereby facilitating optimum chemo-mechanical debridement of the root canal system.

RUNTIME DICTIONARIES FOR ROOT

CERN Document Server

Wind, David Kofoed

2013-01-01

ROOT is the LHC physicists' common tool for data analysis; almost all data is stored using ROOT's I/O system. This system benefits from a custom description of types (a so-called dictionary) that is optimised for the I/O. Until now, the dictionary cannot be provided at run-time; it needs to be prepared in a separate prerequisite step. This project will move the generation of the dictionary to run-time, making use of ROOT 6's new just-in-time compiler. It allows a more dynamic and natural access to ROOT's I/O features especially for user code.

Root systems of chaparral shrubs.

Science.gov (United States)

Kummerow, Jochen; Krause, David; Jow, William

1977-06-01

Root systems of chaparral shrubs were excavated from a 70 m 2 plot of a mixed chaparral stand located on a north-facing slope in San Diego County (32°54' N; 900 m above sea level). The main shrub species present were Adenostoma fasciculatum, Arctostaphylos pungens, Ceanothus greggii, Erigonum fasciculatum, and Haplopappus pinifolius. Shrubs were wired into their positions, and the soil was washed out beneath them down to a depth of approximately 60 cm, where impenetrable granite impeded further washing and root growth was severely restricted. Spacing and interweaving of root systems were recorded by an in-scale drawing. The roots were harvested in accordance to their depths, separated into diameter size classes for each species, and their dry weights measured. Roots of shrubs were largely confined to the upper soil levels. The roots of Eriogonum fasciculatum were concentrated in the upper soil layer. Roots of Adenostoma fasciculatum tended to be more superficial than those from Ceanothus greggii. It is hypothesized that the shallow soil at the excavation site impeded a clear depth zonation of the different root systems. The average dry weight root:shoot ratio was 0.6, ranging for the individual shrubs from 0.8 to 0.4. The root area always exceeded the shoot area, with the corresponding ratios ranging from 6 for Arctostaphylos pungens to 40 for Haplopappus pinifolius. The fine root density of 64 g dry weight per m 2 under the canopy was significantly higher than in the unshaded area. However, the corresponding value of 45 g dry weight per m 2 for the open ground is still high enough to make the establishment of other shrubs difficult.

Inter and intra GC-MS differential analysis of the essential oils of three Mentha species growing in Egypt

Directory of Open Access Journals (Sweden)

Mokhtar M. Bishr

2018-06-01

Full Text Available Gas chromatographic mass spectrometric analysis using head space was carried out on the roots, stems and leaves of three different species of Mint grown in Egypt. This study was carried out aiming to investigate the chemical composition of the essential oils obtained from roots, stem and leaves of Mentha piperita L, Mentha spicata Var. crispa L. and Mentha pulegum L. Also, we are looking to find out any difference in chemical composition between the studied species, through their studied organs. Study of different organs of the same species may give us an idea about the essential oil biosynthetic pathway and may serve as the chemotaxonomic marker for a specific species.Identification of the chemical components of the studied essential oils depends on their retention time, their Kovat retention index and their mass spectrum supported by the data from Wiley library. Results obtained revealed an obvious inter or intra differences in the chemical composition of the three mentioned Mentha species. The common components in all species (in one or more organ are 35 components, the major of which is P-menthone (32.24% in Mentha piperita leaf. Regarding the unique components it was found that Mentha piperita contain 7 unique components the major of which is 2,4-(10-thujadien (3.88%, while Mentha spicata has 18 unique components the major one is Cymene (24.44% and finally Mentha pulegum has 11 unique components the major one is (+-Isomenthol (16.64%. Keywords: Mint species, Mentha piperita, M. spicata and M. pulegum essential oil, GC-MS, Inter and intra differential analysis

Standardization of 32P activity determination method in soil-root cores for root distribution studies

International Nuclear Information System (INIS)

Sharma, R.B.; Ghildyal, B.P.

1976-01-01

The root distribution of wheat variety UP 301 was obtained by determining the 32 P activity in soil-root cores by two methods, viz., ignition and triacid digestion. Root distribution obtained by these two methods was compared with that by standard root core washing procedure. The percent error in root distribution as determined by triacid digestion method was within +- 2.1 to +- 9.0 as against +- 5.5 to +- 21.2 by ignition method. Thus triacid digestion method proved better over the ignition method. (author)

Tree-root control of shallow landslides

Directory of Open Access Journals (Sweden)

D. Cohen

2017-08-01

Full Text Available Tree roots have long been recognized to increase slope stability by reinforcing the strength of soils. Slope stability models usually include the effects of roots by adding an apparent cohesion to the soil to simulate root strength. No model includes the combined effects of root distribution heterogeneity, stress-strain behavior of root reinforcement, or root strength in compression. Recent field observations, however, indicate that shallow landslide triggering mechanisms are characterized by differential deformation that indicates localized activation of zones in tension, compression, and shear in the soil. Here we describe a new model for slope stability that specifically considers these effects. The model is a strain-step discrete element model that reproduces the self-organized redistribution of forces on a slope during rainfall-triggered shallow landslides. We use a conceptual sigmoidal-shaped hillslope with a clearing in its center to explore the effects of tree size, spacing, weak zones, maximum root-size diameter, and different root strength configurations. Simulation results indicate that tree roots can stabilize slopes that would otherwise fail without them and, in general, higher root density with higher root reinforcement results in a more stable slope. The variation in root stiffness with diameter can, in some cases, invert this relationship. Root tension provides more resistance to failure than root compression but roots with both tension and compression offer the best resistance to failure. Lateral (slope-parallel tension can be important in cases when the magnitude of this force is comparable to the slope-perpendicular tensile force. In this case, lateral forces can bring to failure tree-covered areas with high root reinforcement. Slope failure occurs when downslope soil compression reaches the soil maximum strength. When this occurs depends on the amount of root tension upslope in both the slope-perpendicular and slope

Fine Mapping of QUICK ROOTING 1 and 2, Quantitative Trait Loci Increasing Root Length in Rice.

Science.gov (United States)

Kitomi, Yuka; Nakao, Emari; Kawai, Sawako; Kanno, Noriko; Ando, Tsuyu; Fukuoka, Shuichi; Irie, Kenji; Uga, Yusaku

2018-02-02

The volume that the root system can occupy is associated with the efficiency of water and nutrient uptake from soil. Genetic improvement of root length, which is a limiting factor for root distribution, is necessary for increasing crop production. In this report, we describe identification of two quantitative trait loci (QTLs) for maximal root length, QUICK ROOTING 1 ( QRO1 ) on chromosome 2 and QRO2 on chromosome 6, in cultivated rice ( Oryza sativa L.). We measured the maximal root length in 26 lines carrying chromosome segments from the long-rooted upland rice cultivar Kinandang Patong in the genetic background of the short-rooted lowland cultivar IR64. Five lines had longer roots than IR64. By rough mapping of the target regions in BC 4 F 2 populations, we detected putative QTLs for maximal root length on chromosomes 2, 6, and 8. To fine-map these QTLs, we used BC 4 F 3 recombinant homozygous lines. QRO1 was mapped between markers RM5651 and RM6107, which delimit a 1.7-Mb interval on chromosome 2, and QRO2 was mapped between markers RM20495 and RM3430-1, which delimit an 884-kb interval on chromosome 6. Both QTLs may be promising gene resources for improving root system architecture in rice. Copyright © 2018 Kitomi et al.

Fine Mapping of QUICK ROOTING 1 and 2, Quantitative Trait Loci Increasing Root Length in Rice

Directory of Open Access Journals (Sweden)

Yuka Kitomi

2018-02-01

Full Text Available The volume that the root system can occupy is associated with the efficiency of water and nutrient uptake from soil. Genetic improvement of root length, which is a limiting factor for root distribution, is necessary for increasing crop production. In this report, we describe identification of two quantitative trait loci (QTLs for maximal root length, QUICK ROOTING 1 (QRO1 on chromosome 2 and QRO2 on chromosome 6, in cultivated rice (Oryza sativa L.. We measured the maximal root length in 26 lines carrying chromosome segments from the long-rooted upland rice cultivar Kinandang Patong in the genetic background of the short-rooted lowland cultivar IR64. Five lines had longer roots than IR64. By rough mapping of the target regions in BC4F2 populations, we detected putative QTLs for maximal root length on chromosomes 2, 6, and 8. To fine-map these QTLs, we used BC4F3 recombinant homozygous lines. QRO1 was mapped between markers RM5651 and RM6107, which delimit a 1.7-Mb interval on chromosome 2, and QRO2 was mapped between markers RM20495 and RM3430-1, which delimit an 884-kb interval on chromosome 6. Both QTLs may be promising gene resources for improving root system architecture in rice.

[Root resorption and orthodontic treatment].

Science.gov (United States)

Sebbar, M; Bourzgui, F

2011-09-01

The aim of our study was to investigate the prevalence of root resorption during and at the end of orthodontic treatment and to assess its relationship with age, sex and treatment with or without extractions. Our study included 82 patients (51 women and 31 men) aged between 6 and 38 years, who received orthodontic treatment. Evaluation of root resorption was performed on panoramics at the beginning and at the end of orthodontic treatment. All the teeth were observed. The degree of root resorption was increased respectively by the standards in four ordinal levels (4). Data analysis was performed by Epi Info 6.0. Root resorption was present in all the teeth and maxillary incisors are the most affected. The correlation between age and root resorption was significant (p = 0.008). Women were more affected by resorption (P = 0.002). Patients treated with extraction showed more root resorption (p = 0.12). Our results suggest that orthodontic treatment is involved in the development of root resorption. The most often teeth resorbed are maxillary incisors. Age, sex and orthodontic extractions can be considered as risk factors for root resorption.

Untangling the effects of root age and tissue nitrogen on root respiration in Populus tremuloides at different nitrogen supply.

Science.gov (United States)

Ceccon, Christian; Tagliavini, Massimo; Schmitt, Armin Otto; Eissenstat, David M

2016-05-01

Root respiration is a major contributor to terrestrial carbon flux. Many studies have shown root respiration to increase with an increase in root tissue nitrogen (N) concentration across species and study sites. Studies have also shown that both root respiration and root N concentration typically decrease with root age. The effects of added N may directly increase respiration of existing roots or may affect respiration by shifting the age structure of a root population by stimulating growth. To the best of our knowledge, no study has ever examined the effect of added N as a function of root age on root respiration. In this study, root respiration of 13-year-old Populus tremuloides Michx. trees grown in the field and 1-year-old P. tremuloides seedlings grown in containers was analyzed for the relative influence of root age and root N concentration independent of root age on root respiration. Field roots were first tracked using root windows and then sampled at known age. Nitrogen was either applied or not to small patches beneath the windows. In a pot experiment, each plant was grown with its root system split between two separate pots and N was applied at three different levels, either at the same or at different rates between pots. Root N concentration ranged between 1.4 and 1.7% in the field experiment and 1.8 and 2.6% in the seedling experiment. We found that addition of N increased root N concentration of only older roots in the field but of roots of all ages in the potted seedlings. In both experiments, the age-dependent decline in root respiration was largely consistent, and could be explained by a negative power function. Respiration decreased ∼50% by 3 weeks of age. Although root age was the dominant factor affecting respiration in both experiments, in the field experiment, root N also contributed to root respiration independent of root age. These results add further insight into respiratory responses of roots to N addition and mechanisms underlying the

3D Ground Penetrating Radar to Detect Tree Roots and Estimate Root Biomass in the Field

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Shiping Zhu

2014-06-01

Full Text Available The objectives of this study were to detect coarse tree root and to estimate root biomass in the field by using an advanced 3D Ground Penetrating Radar (3D GPR system. This study obtained full-resolution 3D imaging results of tree root system using 500 MHz and 800 MHz bow-tie antennas, respectively. The measurement site included two larch trees, and one of them was excavated after GPR measurements. In this paper, a searching algorithm, based on the continuity of pixel intensity along the root in 3D space, is proposed, and two coarse roots whose diameters are more than 5 cm were detected and delineated correctly. Based on the detection results and the measured root biomass, a linear regression model is proposed to estimate the total root biomass in different depth ranges, and the total error was less than 10%. Additionally, based on the detected root samples, a new index named “magnitude width” is proposed to estimate the root diameter that has good correlation with root diameter compared with other common GPR indexes. This index also provides direct measurement of the root diameter with 13%–16% error, providing reasonable and practical root diameter estimation especially in the field.

Root-soil relationships and terroir

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Tomasi, Diego

2015-04-01

Soil features, along with climate, are among the most important determinants of a succesful grape production in a certain area. Most of the studies, so far, investigated the above-ground vine response to differente edaphic and climate condition, but it is clearly not sufficient to explain the vine whole behaviour. In fact, roots represent an important part of the terroir system (soil-plant-atmosphere-man), and their study can provide better comprehension of vine responses to different environments. The root density and distribution, the ability of deep-rooting and regenerating new roots are good indicators of root well-being, and represents the basis for an efficient physiological activity of the root system. Root deepening and distribution are strongly dependent and sensitive on soil type and soil properties, while root density is affected mostly by canopy size, rootstock and water availability. According to root well-being, soil management strategies should alleviate soil impediments, improving aeration and microbial activity. Moreover, agronomic practices can impact root system performance and influence the above-ground growth. It is well known, for example, that the root system size is largely diminished by high planting densities. Close vine spacings stimulate a more effective utilization of the available soil, water and nutrients, but if the competition for available soil becomes too high, it can repress vine growth, and compromise vineyard longevity, productivity and reaction to growing season weather. Development of resilient rootstocks, more efficient in terms of water and nutrient uptake and capable of dealing with climate and soil extremes (drought, high salinity) are primary goals fore future research. The use of these rootstocks will benefit a more sustainable use of the soil resources and the preservation and valorisation of the terroir.

When stress and development go hand in hand: main hormonal controls of adventitious rooting in cuttings.

Science.gov (United States)

da Costa, Cibele T; de Almeida, Márcia R; Ruedell, Carolina M; Schwambach, Joseli; Maraschin, Felipe S; Fett-Neto, Arthur G

2013-01-01

Adventitious rooting (AR) is a multifactorial response leading to new roots at the base of stem cuttings, and the establishment of a complete and autonomous plant. AR has two main phases: (a) induction, with a requirement for higher auxin concentration; (b) formation, inhibited by high auxin and in which anatomical changes take place. The first stages of this process in severed organs necessarily include wounding and water stress responses which may trigger hormonal changes that contribute to reprogram target cells that are competent to respond to rooting stimuli. At severance, the roles of jasmonate and abscisic acid are critical for wound response and perhaps sink strength establishment, although their negative roles on the cell cycle may inhibit root induction. Strigolactones may also inhibit AR. A reduced concentration of cytokinins in cuttings results from the separation of the root system, whose tips are a relevant source of these root induction inhibitors. The combined increased accumulation of basipetally transported auxins from the shoot apex at the cutting base is often sufficient for AR in easy-to-root species. The role of peroxidases and phenolic compounds in auxin catabolism may be critical at these early stages right after wounding. The events leading to AR strongly depend on mother plant nutritional status, both in terms of minerals and carbohydrates, as well as on sink establishment at cutting bases. Auxins play a central role in AR. Auxin transporters control auxin canalization to target cells. There, auxins act primarily through selective proteolysis and cell wall loosening, via their receptor proteins TIR1 (transport inhibitor response 1) and ABP1 (Auxin-Binding Protein 1). A complex microRNA circuitry is involved in the control of auxin response factors essential for gene expression in AR. After root establishment, new hormonal controls take place, with auxins being required at lower concentrations for root meristem maintenance and cytokinins

Toxic effects of essential plant oils in adult Sitophilus oryzae (Linnaeus (Coleoptera, Curculionidae

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Andréa Roveré Franz

2011-03-01

Full Text Available Toxic effects of essential plant oils in adult Sitophilus oryzae (Linnaeus (Coleoptera, Curculionidae. Stored grains are subject to losses in quality nutritional value and in sanitation from the time they are stored to the time they are consumed. Botanical insecticides may offer an alternative solution for pest control. The objective was to test the insecticidal properties of the essential oils of Cymbopogon citratus (leaf, Zingiber officinale (root and Mentha sp. (leaf. The efficacy of these oils was tested to control the rice weevil, S. oryzae, using hydrodistillation. Chemical analysis of the essential oils was carried out by gas chromatography. Major components of C. citratus were geranial (48% and neral (31%, of Z. officinale were α-zingibereno (13%, geranial (16%, neral (10% and α-farneseno (5% and of Mentha sp. was menthol (92%. Bioassays were carried out by fumigation and topical application. In topical application assays, the essential oil of C. citratus had greater toxicity (LC50 0.027 µL mL-1 and shorter exposure time than the oils of the other two plants. After 24 h and 48 h, 70% and 100% mortality of S. oryzae occurred, respectively. In fumigation assays, essential oil of Z. officinale had a lower LC50 (1.18 µL cm-2 and 70% mortality after 24 h exposure. Therefore, we recommend the use of essential oils of C. citratus and Z. officinale to control the rice weevil S. oryzae.

Root cause of waterborne diseases in Pakistan

International Nuclear Information System (INIS)

Hashml, H.N.; Ghumman, A.R.; Malik, N.E.

2005-01-01

The waterborne diseases are increasing rapidly at an alarming rate in Pakistan due to poor sanitation and unsafe drinking water supplies. This study shows that about 25 percent of all the illnesses in Lahore are due to severe cases of waterborne diseases. Unhygienic sanitation system is the root cause for this scenario. Drinking water, samples were collected from different zones of the city to find out the root cause of waterborne diseases. The samples from the distribution system serving 'Kachi Abbadies' (Underdeveloped areas) were much more contaminated, may be due to non-chlorination as compared to the water which is regularly chlorinated in posh areas of the city. Contribution of soakage pits in groundwater contamination is more significant at shallow depths. From the laboratory results it is clear that water distribution in underdeveloped areas of the city is highly contaminated and ground water available at shallow depth is also infected by microbial activities. Data collected from the different hospitals to investigate the problem shows that waterborne diseases vary their trend seasonally. Here in Pakistan, rainy season (July-August) reveals maximum number of cases of waterborne diseases. Proper sanitation and water supply systems are more essential to control the influence of waterborne diseases within the country. It is strongly recommended that reputable ways of communications are urgently required to highlight the diseases related to unsafe drinking water. (author)

Root growth in corn and soybeans: effects of cadmium and lead on lateral root initiation

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Malone, C P; Miller, R J; Koeppe, D E

1978-02-01

This study examines the previously reported inhibitory effects of Cd on root growth. In hydroponic experiments, 100 ..mu..g Cd/l effected a 33% inhibition of lateral root initiation of corn. The growth of corn and soybean primary roots was not reduced at Cd concentrations of 1 mg/l, and the number of lateral root initials in soybeans was not reduced at 2 mg Cd/l. The toxic effects of Cd were ameliorated by additions of Zn or by additions of Fe citrate to nutrient growth solutions. While both Zn and Fe additions did result in increased lateral root initiation, the number of initials was significantly lower than the controls. Lead had no effect on the initiation of soybean lateral roots at a concentration of 100 ..mu..g Pb/l. However, 5 mg Pb/l did effect a 21% decrease in corn lateral root initials, but this decrease could not be demonstrated with higher Pb concentrations.

A study of root canal morphology of human primary incisors and molars using cone beam computerized tomography: An in vitro study

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Vivek Gaurav

2013-01-01

Full Text Available Background: Variations in morphology of root canals in primary teeth usually leads to complications during and after endodontic therapy. To improve the success in endodontics, a thorough knowledge of the root canal morphology is essential. Aim: The aim of this study was to assess the variation in number and morphology of the root canals of primary incisors and molars and to study the applicability of cone beam computerized tomography (CBCT in assessing the same. Settings and Design: A total of 60 primary molars and incisors with full root length were collected and various parameters such as the number of roots, number of canals, diameter of root canal at cementoenamel junction and middle-third, length and angulations of roots of primary molars and incisors were studied using CBCT. Statistical analysis used: The observations were put to descriptive statistics to find out the frequency, mean, standard deviation and range for all four subgroups. Further, unpaired t-test was used to compare these parameters between subgroups and analysis of variance test was implemented to evaluate the parameters within the subgroups. Results and Conclusion: The CBCT showed the presence of bifurcation of root canal at middle third in 13% of mandibular incisors while 20% of mandibular molars had two canals in distal root. The diameter of distobuccal root canal of maxillary molars and mesiolingual canal of mandibular molars was found to be minimum. CBCT is a relatively new and effective technology, which provides an auxiliary imaging modality to supplement conventional radiography for assessing the variation in root canal morphology of primary teeth.

Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology

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Zhenzhen eQiao

2013-11-01

Full Text Available Plant root is an organ composed of multiple cell types with different functions. This multicellular complexity limits our understanding of root biology because –omics studies performed at the level of the entire root reflect the average responses of all cells composing the organ. To overcome this difficulty and allow a more comprehensive understanding of root cell biology, an approach is needed that would focus on one single cell type in the plant root. Because of its biological functions (i.e. uptake of water and various nutrients; primary site of infection by nitrogen-fixing bacteria in legumes, the root hair cell is an attractive single cell model to study root cell response to various stresses and treatments. To fully study their biology, we have recently optimized procedures in obtaining root hair cell samples. We culture the plants using an ultrasound aeroponic system maximizing root hair cell density on the entire root systems and allowing the homogeneous treatment of the root system. We then isolate the root hair cells in liquid nitrogen. Isolated root hair yields could be up to 800 to 1000 mg of plant cells from 60 root systems. Using soybean as a model, the purity of the root hair was assessed by comparing the expression level of genes previously identified as soybean root hair specific between preparations of isolated root hair cells and stripped roots, roots devoid in root hairs. Enlarging our tests to include other plant species, our results support the isolation of large quantities of highly purified root hair cells which is compatible with a systems biology approach.