Sample records for vestimentiferan ridgeia piscesae
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Pia Miglietta, Maria; Hourdez, Stephane; Cowart, Dominique A.; Schaeffer, Stephen W.; Fisher, Charles
2010-11-01
At least six morphospecies of vestimentiferan tubeworms are associated with cold seeps in the Gulf of Mexico (GOM). The physiology and ecology of the two best-studied species from depths above 1000 m in the upper Louisiana slope (Lamellibrachia luymesi and Seepiophila jonesi) are relatively well understood. The biology of one rare species from the upper slope (escarpiid sp. nov.) and three morphospecies found at greater depths in the GOM (Lamellibrachia sp. 1, L. sp. 2, and Escarpia laminata) are not as well understood. Here we address species distributions and boundaries of cold-seep tubeworms using phylogenetic hypotheses based on two mitochondrial genes. Fragments of the mitochondrial large ribosomal subunit rDNA (16S) and cytochrome oxidase subunit I (COI) genes were sequenced for 167 vestimentiferans collected from the GOM and analyzed in the context of other seep vestimentiferans for which sequence data were available. The analysis supported five monophyletic clades of vestimentiferans in the GOM. Intra-clade variation in both genes was very low, and there was no apparent correlation between the within-clade diversity and collection depth or location. Two of the morphospecies of Lamellibrachia from different depths in the GOM could not be distinguished by either mitochondrial gene. Similarly, E. laminata could not be distinguished from other described species of Escarpia from either the west coast of Africa or the eastern Pacific using COI. We suggest that the mitochondrial COI and 16S genes have little utility as barcoding markers for seep vestimentiferan tubeworms.
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Becker, Erin Leigh; Macko, Stephen A.; Lee, Raymond W.; Fisher, Charles R.
2011-02-01
On the otherwise low-biomass seafloor of the Gulf of Mexico (GoM) continental slope, natural oil and gas seeps are oases of local primary production that support lush animal communities. Hundreds of seep communities have been documented on the continental slope, and nutrition derived from seeps could be an important link in the overall GoM food web. Here, we present a uniquely large and cohesive data set of δ13C, δ15N, and δ34S compositions of the vestimentiferan tubeworms Escarpia laminata and Lamellibrachia sp. 1, which dominate biomass at GoM seeps and provide habitat for hundreds of other species. Our sampling design encompassed an entire region of the GoM lower slope, allowing us for the first time to assess spatial variability in isotope compositions and to robustly address long-standing hypotheses about how vestimentiferans acquire and cycle nutrients over their long lifespan (200+ years). Tissue δ13C values provided strong evidence that larger adult vestimentiferans use their buried roots to take up dissolved inorganic carbon from sediment pore water, while very small individuals use their plume to take up carbon dioxide from the seawater. δ34S values were extremely variable among individuals of the same species within one location (<1 m2 area), indicating high variability in the inorganic sulfur pools on a very small spatial scale. This finding supports the hypothesis that vestimentiferans use their roots to cycle sulfate and sulfide between their symbionts and free-living consortia of sulfate-reducing archaea in the sediment. Finally, consistent differences in δ15N between two cooccurring vestimentiferan species provided the first strong evidence for partitioning of inorganic resources, which has significant implications for the ecology and evolution of this taxonomic group.
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Lelièvre, Yann; Sarrazin, Jozée; Marticorena, Julien; Schaal, Gauthier; Day, Thomas; Legendre, Pierre; Hourdez, Stéphane; Matabos, Marjolaine
2018-05-01
Hydrothermal vent sites along the Juan de Fuca Ridge in the north-east Pacific host dense populations of Ridgeia piscesae tubeworms that promote habitat heterogeneity and local diversity. A detailed description of the biodiversity and community structure is needed to help understand the ecological processes that underlie the distribution and dynamics of deep-sea vent communities. Here, we assessed the composition, abundance, diversity and trophic structure of six tubeworm samples, corresponding to different successional stages, collected on the Grotto hydrothermal edifice (Main Endeavour Field, Juan de Fuca Ridge) at 2196 m depth. Including R. piscesae, a total of 36 macrofaunal taxa were identified to the species level. Although polychaetes made up the most diverse taxon, faunal densities were dominated by gastropods. Most tubeworm aggregations were numerically dominated by the gastropods Lepetodrilus fucensis and Depressigyra globulus and polychaete Amphisamytha carldarei. The highest diversities were found in tubeworm aggregations characterised by the longest tubes (18.5 ± 3.3 cm). The high biomass of grazers and high resource partitioning at a small scale illustrates the importance of the diversity of free-living microbial communities in the maintenance of food webs. Although symbiont-bearing invertebrates R. piscesae represented a large part of the total biomass, the low number of specialised predators on this potential food source suggests that its primary role lies in community structuring. Vent food webs did not appear to be organised through predator-prey relationships. For example, although trophic structure complexity increased with ecological successional stages, showing a higher number of predators in the last stages, the food web structure itself did not change across assemblages. We suggest that environmental gradients provided by the biogenic structure of tubeworm bushes generate a multitude of ecological niches and contribute to the partitioning
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Spectroscopic studies of carbon impurities in PISCES-A
International Nuclear Information System (INIS)
Ra, Y.; Hirooka, Y.; Leung, W.K.; Conn, R.W.; Pospieszczyk, A.
1989-08-01
The graphite used for the limiter of the tokamak reactor produces carbon-containing molecular impurities as a result of the interactions with the edge plasma. The behavior of these molecular impurities has been studied using emission spectroscopy. The present study includes: finding molecular bands and atomic lines in the visible spectral range which can be used for the study of the molecular impurities, studying the breakup processes of the molecular impurities on their way from the source into the plasma, developing a spectroscopic diagnostic method for the absolute measurement of the molecular impurity flux resulting from graphite erosion. For these studies, carbon-containing molecules such as CH 4 , C 2 H 2 , C 2 H 4 , and CO 2 were injected into the tokamak-boundary,like plasma generated by PISCES-A. The spectrograms of these gases were taken. Many useful bands and lines were determined from the spectrograms. The breakup processes of these gases were studied by observing the spatial profiles of the emission of the molecules and their radicals for different plasma conditions. For the absolute measurement of the eroded molecular impurity flux, the photon efficiency of the lines and bands were found by measuring the absolute number of the emitted photons and injected gas molecules. The chemical sputtering yield of graphite by hydrogen plasma was spectroscopically measured using the previously obtained photon efficiencies. It showed good agreement with results obtained by weight loss measurements. 16 refs., 7 figs., 1 tab
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Spectroscopic studies of carbon containing molecules and their break-up in PISCES-A
International Nuclear Information System (INIS)
Pospieszczyk, A.; Ra, Y.; Hirooka, Y.; Conn, R.W.; Goebel, D.M.; LaBombard, B.; Nygren, R.E.
1989-12-01
We have used the PISCES-A facility in order to study the behavior of carbon containing molecules in a representative plasma with parameters close to that of a tokamak boundary layer, CH 4 , C 2 H 2 , C 2 H 4 , CO, and CO 2 molecules were introduced through a slit aperture into a helium plasma and the radiation from these due to electronic excitation was spectrographically recorded. The imaging of the plasma onto the entrance slit of a 1.33m McPherson optical spectrometer was chosen in such a way that simultaneous information about spectral and spatial distribution of the emission could be obtained by an attached photographic camera and an optical multichannel analyser (OMA). The recorded spectra show that many features in previously obtained spectra from limiters originate -- beside from hydrocarbons -- from carbonoxides, which seem to play a major role in the transport of carbon and oxygen. It was also possible to calibrate the radiation intensity of several molecular bands versus the known molecular influx so that an absolute determination of these fluxes from the wall of a fusion device could be done. Measurements of the attenuation of the individual species were carried out, which describe the penetration of carbon, oxygen, and hydrogen atoms into a discharge by taking into account individual steps in the molecular breakup process. 36 refs., 35 figs
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Directory of Open Access Journals (Sweden)
Daphne Cuvelier
Full Text Available The NEPTUNE cabled observatory network hosts an ecological module called TEMPO-mini that focuses on hydrothermal vent ecology and time series, granting us real-time access to data originating from the deep sea. In 2011-2012, during TEMPO-mini's first deployment on the NEPTUNE network, the module recorded high-resolution imagery, temperature, iron (Fe and oxygen on a hydrothermal assemblage at 2186 m depth at Main Endeavour Field (North East Pacific. 23 days of continuous imagery were analysed with an hourly frequency. Community dynamics were analysed in detail for Ridgeia piscesae tubeworms, Polynoidae, Pycnogonida and Buccinidae, documenting faunal variations, natural change and biotic interactions in the filmed tubeworm assemblage as well as links with the local environment. Semi-diurnal and diurnal periods were identified both in fauna and environment, revealing the influence of tidal cycles. Species interactions were described and distribution patterns were indicative of possible microhabitat preference. The importance of high-resolution frequencies (<1 h to fully comprehend rhythms in fauna and environment was emphasised, as well as the need for the development of automated or semi-automated imagery analysis tools.
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Durkin, Alanna; Fisher, Charles R.; Cordes, Erik E.
2017-08-01
The deep sea is home to many species that have longer life spans than their shallow-water counterparts. This trend is primarily related to the decline in metabolic rates with temperature as depth increases. However, at bathyal depths, the cold-seep vestimentiferan tubeworm species Lamellibrachia luymesi and Seepiophila jonesi reach extremely old ages beyond what is predicted by the simple scaling of life span with body size and temperature. Here, we use individual-based models based on in situ growth rates to show that another species of cold-seep tubeworm found in the Gulf of Mexico, Escarpia laminata, also has an extraordinarily long life span, regularly achieving ages of 100-200 years with some individuals older than 300 years. The distribution of results from individual simulations as well as whole population simulations involving mortality and recruitment rates support these age estimates. The low 0.67% mortality rate measurements from collected populations of E. laminata are similar to mortality rates in L. luymesi and S. jonesi and play a role in evolution of the long life span of cold-seep tubeworms. These results support longevity theory, which states that in the absence of extrinsic mortality threats, natural selection will select for individuals that senesce slower and reproduce continually into their old age.
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Pflugfelder, Bettina; Cary, S Craig; Bright, Monika
2009-07-01
Deep-sea vestimentiferan tubeworms, which live in symbiosis with bacteria, exhibit different life strategies according to their habitat. At unstable and relatively short-lived hydrothermal vents, they grow extremely fast, whereas their close relatives at stable and long-persisting cold seeps grow slowly and live up to 300 years. Growth and age differences are thought to occur because of ecological and physiological adaptations. However, the underlying mechanisms of cell proliferation and death, which are closely linked to homeostasis, growth, and longevity, are unknown. Here, we show by immunohistochemical and ultrastructural cell cycle analyses that cell proliferation activities of the two species studied are higher than in any other characterized invertebrate, being only comparable with tumor and wound-healing processes. The slow growth in Lamellibrachia luymesi from cold seeps results from balanced activities of proliferation and apoptosis in the epidermis. In contrast, Riftia pachyptila from hydrothermal vents grows fast because apoptosis is down-regulated in this tissue. The symbiont-housing organ, the trophosome, exhibits a complex cell cycle and terminal differentiation pattern in both species, and growth is regulated by proliferation. These mechanisms have similarities to the up- and down-regulation of proliferation or apoptosis in various types of tumor, although they occur in healthy animals in this study, thus providing significant insights into the underlying mechanisms of growth and longevity.
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Thompson, M.; Kluth, P.; Doerner, R. P.; Kirby, N.; Riley, D.; Corr, C. S.
2016-02-01
Grazing incidence small angle x-ray scattering was performed on tungsten samples exposed to helium plasma in the MAGPIE and Pisces-A linear plasma devices to measure the size distributions of resulting helium nano-bubbles. Nano-bubbles were fitted assuming spheroidal particles and an exponential diameter distribution. These particles had mean diameters between 0.36 and 0.62 nm. Pisces-A exposed samples showed more complex patterns, which may suggest the formation of faceted nano-bubbles or nano-scale surface structures.
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Bacterial endosymbioses of gutless tube-dwelling worms in nonhydrothermal vent habitats.
Naganuma, Takeshi; Elsaied, Hosam E; Hoshii, Daiki; Kimura, Hiroyuki
2005-01-01
Gutless tube-dwelling worms of pogonophorans (also known as frenulates) and vestimentiferans depend on primary production of endosymbiotic bacteria. The endosymbionts include thiotrophs that oxidize sulfur for autotrophic production and methanotrophs that oxidize and assimilate methane. Although most of the pogonophoran and vestimentiferan tube worms possess single thiotrophic 16S rRNA genes (16S rDNA) related to gamma-proteobacteria, some pogonohorans are known to bear single methanotroph species or even dual symbionts of thiotrophs and methanotrophs. The vestimentiferan Lamellibrachia sp. L1 shows symbiotic 16S rDNA sequences of alpha-, beta-, gamma-, and epsilon-proteobacteria, varying among specimens, with RuBisCO form II gene (cbbM) sequences related to beta-proteobacteria. An unidentified pogonophoran from the world's deepest cold seep, 7326-m deep in the Japan Trench, hosts a symbiotic thiotroph based on 16S rDNA with the RuBisCO form I gene (cbbL). In contrast, a shallow-water pogonophoran (Oligobrachia mashikoi) in coastal Japan Sea has a methanotrophic 16S rDNA and thiotrophic cbbL, which may suggest the feature of type X methanotrophs. These observations demonstrate that pogonophoran and vestimentiferan worms have higher plasticity in bacterial symbioses than previously suspected.
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A paradox resolved: Sulfide acquisition by roots of seep tubeworms sustains net chemoautotrophy
Freytag, John K.; Girguis, Peter R.; Bergquist, Derk C.; Andras, Jason P.; Childress, James J.; Fisher, Charles R.
2001-01-01
Vestimentiferan tubeworms, symbiotic with sulfur-oxidizing chemoautotrophic bacteria, dominate many cold-seep sites in the Gulf of Mexico. The most abundant vestimentiferan species at these sites, Lamellibrachia cf. luymesi, grows quite slowly to lengths exceeding 2 meters and lives in excess of 170–250 years. L. cf. luymesi can grow a posterior extension of its tube and tissue, termed a “root,” down into sulfidic sediments below its point of original attachment. This extension can be longer than the anterior portion of the animal. Here we show, using methods optimized for detection of hydrogen sulfide down to 0.1 μM in seawater, that hydrogen sulfide was never detected around the plumes of large cold-seep vestimentiferans and rarely detectable only around the bases of mature aggregations. Respiration experiments, which exposed the root portions of L. cf. luymesi to sulfide concentrations between 51–561 μM, demonstrate that L. cf. luymesi use their roots as a respiratory surface to acquire sulfide at an average rate of 4.1 μmol⋅g−1⋅h−1. Net dissolved inorganic carbon uptake across the plume of the tubeworms was shown to occur in response to exposure of the posterior (root) portion of the worms to sulfide, demonstrating that sulfide acquisition by roots of the seep vestimentiferan L. cf. luymesi can be sufficient to fuel net autotrophic total dissolved inorganic carbon uptake. PMID:11687647
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Arellano, Shawn M.; Lee, Onon; Lafi, Feras Fawzi; Yang, Jiangke; Wang, Yong; Young, Craig; Qian, Peiyuan
2012-01-01
The encrusting sponge Myxilla (Ectyomyxilla) methanophila (Poecilosclerida: Myxillidae) is an epibiont on vestimentiferan tubeworms at hydrocarbon seeps on the upper Louisiana slope of the Gulf of Mexico. It has long been suggested that this sponge
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Investigation of He–W interactions using DiMES on DIII-D
International Nuclear Information System (INIS)
Doerner, R P; Rudakov, D L; Chrobak, C P; Pace, D C; Briesemeister, A R; Corr, C; Kluth, P; Thompson, M; De Temmerman, G; Pitts, R A; Lasnier, C J; McLean, A G; Schmitz, O; Winters, V
2016-01-01
Tungsten button samples were exposed to He ELMing H-mode plasma in DIII-D using 2.3 MW of electron cyclotron heating power. Prior to the exposures, the W buttons were exposed to either He, or D, plasma in PISCES-A for 2000 s at surface temperatures of 225–850 °C to create a variety of surfaces (surface blisters, subsurface nano-bubbles, fuzz). Erosion was spectroscopically measured from each DiMES sample, with the exception of the fuzzy W samples which showed almost undetectable WI emission. Post-exposure grazing incidence small angle x-ray scattering surface analysis showed the formation of 1.5 nm diameter He bubbles in the surface of W buttons after only a single DIII-D (3 s, ∼150 ELMs) discharge, similar to the bubble layer resulting from the 2000 s. exposure in PISCES-A. No surface roughening, or damage, was detected on the samples after approximately 600 ELMs with energy density between 0.04–0.1 MJ m −2 . (paper)
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Directory of Open Access Journals (Sweden)
Chunya Huang
2016-08-01
Full Text Available Background Vestimentiferan tubeworms are some of the most recognizable fauna found at deep-sea cold seeps, isolated environments where hydrocarbon rich fluids fuel biological communities. Several studies have investigated tubeworm population structure; however, much is still unknown about larval dispersal patterns at Gulf of Mexico (GoM seeps. As such, researchers have applied microsatellite markers as a measure for documenting the transport of vestimentiferan individuals. In the present study, we investigate the utility of microsatellites to be cross-amplified within the escarpiid clade of seep vestimentiferans, by determining if loci originally developed for Escarpia spp. could be amplified in the GoM seep tubeworm, Seepiophila jonesi. Additionally, we determine if cross-amplified loci can reliably uncover the same signatures of high gene flow seen in a previous investigation of S. jonesi. Methods Seventy-seven S. jonesi individuals were collected from eight seep sites across the upper Louisiana slope (<1,000 m in the GoM. Forty-eight microsatellite loci that were originally developed for Escarpia laminata (18 loci and Escarpia southwardae (30 loci were tested to determine if they were homologous and polymorphic in S. jonesi. Loci found to be both polymorphic and of high quality were used to test for significant population structuring in S. jonesi. Results Microsatellite pre-screening identified 13 (27% of the Escarpia loci were homologous and polymorphic in S. jonesi, revealing that microsatellites can be amplified within the escarpiid clade of vestimentiferans. Our findings uncovered low levels of heterozygosity and a lack of genetic differentiation amongst S. jonesi from various sites and regions, in line with previous investigations that employed species-specific polymorphic loci on S. jonesi individuals retrieved from both the same and different seep sites. The lack of genetic structure identified from these populations supports the
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Tubeworm May Live Longer by Cycling Its Sulfur Downward
Cordes, Erik E; Arthur, Michael A; Shea, Katriona; Arvidson, Rolf S; Fisher, Charles R
2005-01-01
The deep-sea vestimentiferan tubeworm Lamellibrachia luymesi forms large aggregations at hydrocarbon seeps in the Gulf of Mexico that may persist for over 250 y. Here, we present the results of a diagenetic model in which tubeworm aggregation persistence is achieved through augmentation of the supply of sulfate to hydrocarbon seep sediments. In the model, L. luymesi releases the sulfate generated by its internal, chemoautotrophic, sulfide-oxidizing symbionts through posterior root-like extens...
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Fuzzy tungsten in a magnetron sputtering device
Energy Technology Data Exchange (ETDEWEB)
Petty, T.J., E-mail: tjpetty@liv.ac.uk [Department of Electrical Engineering and Electronics, University of Liverpool, Brownlow Hill, Liverpool, L69 3GJ (United Kingdom); Khan, A. [Pariser Building-G11, School of Mechanical, Aerospace and Civil Engineering, The University of Manchester, Manchester, M13 9PL (United Kingdom); Heil, T. [NiCaL, Block C Waterhouse Building, 1-3 Brownlow Street, Liverpool, L69 3GL (United Kingdom); Bradley, J.W., E-mail: j.w.bradley@liverpool.ac.uk [Department of Electrical Engineering and Electronics, University of Liverpool, Brownlow Hill, Liverpool, L69 3GJ (United Kingdom)
2016-11-15
Helium ion induced tungsten nanostructure (tungsten fuzz) has been studied in a magnetron sputtering device. Three parameters were varied, the fluence from 3.4 × 10{sup 23}–3.0 × 10{sup 24} m{sup −2}, the He ion energy from 25 to 70 eV, and the surface temperature from 900 to 1200 K. For each sample, SEM images were captured, and measurements of the fuzz layer thickness, surface roughness, reflectivity, and average structure widths are provided. A cross-over point from pre-fuzz to fully formed fuzz is found at 2.4 ± 0.4 × 10{sup 24} m{sup −2}, and a temperature of 1080 ± 60 K. No significant change was observed in the energy sweep. The fuzz is compared to low fluence fuzz created in the PISCES-A linear plasma device. Magnetron fuzz is less uniform than fuzz created by PISCES-A and with generally larger structure widths. The thicknesses of the magnetron samples follow the original Φ{sup 1/2} relation as opposed to the incubation fluence fit. - Highlights: • Fuzz has been created in a magnetron sputtering device. • Three parameters for fuzz formation have been swept. • A cross-over from pre-fuzz to fully formed fuzz is seen. • Evidence for annealing out at lower temperatures than has been seen before. • Evidence to suggest that fuzz grown in discrete exposures is not consistent with fuzz grown in one long exposure.
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Fuzzy tungsten in a magnetron sputtering device
International Nuclear Information System (INIS)
Petty, T.J.; Khan, A.; Heil, T.; Bradley, J.W.
2016-01-01
Helium ion induced tungsten nanostructure (tungsten fuzz) has been studied in a magnetron sputtering device. Three parameters were varied, the fluence from 3.4 × 10 23 –3.0 × 10 24 m −2 , the He ion energy from 25 to 70 eV, and the surface temperature from 900 to 1200 K. For each sample, SEM images were captured, and measurements of the fuzz layer thickness, surface roughness, reflectivity, and average structure widths are provided. A cross-over point from pre-fuzz to fully formed fuzz is found at 2.4 ± 0.4 × 10 24 m −2 , and a temperature of 1080 ± 60 K. No significant change was observed in the energy sweep. The fuzz is compared to low fluence fuzz created in the PISCES-A linear plasma device. Magnetron fuzz is less uniform than fuzz created by PISCES-A and with generally larger structure widths. The thicknesses of the magnetron samples follow the original Φ 1/2 relation as opposed to the incubation fluence fit. - Highlights: • Fuzz has been created in a magnetron sputtering device. • Three parameters for fuzz formation have been swept. • A cross-over from pre-fuzz to fully formed fuzz is seen. • Evidence for annealing out at lower temperatures than has been seen before. • Evidence to suggest that fuzz grown in discrete exposures is not consistent with fuzz grown in one long exposure.
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Fuzz growth in the gaps of castellated W in PISCES-A: Experiment and modeling
Czech Academy of Sciences Publication Activity Database
Baldwin, M.J.; Dejarnac, Renaud; Komm, Michael; Doerner, R.P.
2017-01-01
Roč. 59, č. 6 (2017), č. článku 064006. ISSN 0741-3335 Institutional support: RVO:61389021 Keywords : tungsten fuzz * castellation * SPICE2 * PISCES Subject RIV: BL - Plasma and Gas Discharge Physics OBOR OECD: Fluids and plasma physics (including surface physics) Impact factor: 2.392, year: 2016 http://iopscience.iop.org/article/10.1088/1361-6587/aa6b32/meta
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Exposures of tungsten nanostructures to divertor plasmas in DIII-D
International Nuclear Information System (INIS)
Rudakov, D L; Doerner, R P; Baldwin, M J; Boedo, J A; Hollmann, E M; Moyer, R A; Wong, C P C; Chrobak, C P; Guo, H Y; Leonard, A W; Pace, D C; Thomas, D M; Wright, G M; Abrams, T; Briesemeister, A R; McLean, A G; Fenstermacher, M E; Lasnier, C J; Watkins, J G
2016-01-01
Tungsten nanostructures (W-fuzz) prepared in the PISCES-A linear device have been found to survive direct exposure to divertor plasmas in DIII-D. W-fuzz was exposed in the lower divertor of DIII-D using the divertor material evaluation system. Two samples were exposed in lower single null (LSN) deuterium H-mode plasmas. The first sample was exposed in three discharges terminated by vertical displacement event disruptions, and the second in two discharges near the lowered X-point. More recently, three samples were exposed near the lower outer strike point in predominantly helium H-mode LSN plasmas. In all cases, the W-fuzz survived plasma exposure with little obvious damage except in the areas where unipolar arcing occurred. Arcing is effective in W-fuzz removal, and it appears that surfaces covered with W-fuzz can be more prone to arcing than smooth W surfaces. (paper)
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Energy Technology Data Exchange (ETDEWEB)
Williams, P M; Smith, K L; Druffel, E M; Linick, T W
1981-07-30
The large quantities of reduced carbon that are required to support the filter-feeding mytilid mussels (Mytilus sp.), vesicomyid clams (Clayptogena sp.) and various other animals in the Galapagos hydrothermal vent systems are thought to be derived from either the in situ synthesis of particulate organic matter by chemoautotrophic, sulfide-oxidizing bacteria or by the advection of sedimentary organic carbon into the vent environment from surrounding areas. In contrast, the dense populations of vestimentiferan tubeworms (Riftia pachyptila), which lack mouth organs and digestive tracts, apparently utilize organic carbon synthesized by symbiotic chemoautotrophs. We present evidence here, based on adC activities and acC/abC ratios, that the principal source of dietary carbon for mussels and tubeworms is derived from the dissolved inorganic carbon (DIOC) in the vent effluent waters.
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Vetter, R.D.; Fry, B.
1998-01-01
Total sulfur (S(TOT)), elemental sulfur (S??) and sulfur-isotope compositions (??34S) of marine animals were analyzed to determine whether these chemical characteristics could help distinguish animals with a sulfur-based, thiotrophic nutrition from animals whose nutrition is based on methanotrophy or on more normal consumption of phytoplankton-derived organic matter. The presence of S??was almost entirely confined to the symbiont-containing tissues of thiotrophs, but was sometimes undetectable in thiotrophic species where sulfide availability was probably low. When S??contents were subtracted, the remaining tissue-sulfur concentrations were similar for all nutritional groups. ??34S values were typically lower for thiotrophs than for other groups, although there was overlap in methanotroph and thiotroph values at some sites. Field evidence supported the existence of small to moderate (1 to 10???)34S fractionations in the uptake of sulfides and metabolism of thiosulfate. In general, a total sulfur content of >3% dry weight, the presence of elemental sulfur, and ??34S values less than + 5??? can be used to infer a thiotrophic mode of nutrition.
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Helium concentration in tungsten nano-tendril surface morphology using Elastic Recoil Detection
International Nuclear Information System (INIS)
Woller, K.B.; Whyte, D.G.; Wright, G.M.; Doerner, R.P.; De Temmerman, G.
2013-01-01
Helium (He) concentrations in tungsten nano-tendrils (W fuzz) have been measured for the first time using Elastic Recoil Detection (ERD). Fuzzy and non-fuzzy W surfaces were analyzed in order to illuminate the role of He in the transition in surface morphologies. Samples grown in the PISCES-A and PILOT-PSI experiments allowed a survey of surface temperature ranging from T s = 470–2595 K and of He fluence on the order of Φ He ∼ 10 24 –10 27 ions/m 2 . He concentrations measured in the bulk of W fuzz layers are roughly uniform with bulk He concentration 1–4 at.% while samples with just He in the near surface peaked at 1–2 at.%. This confirms that the nano-tendrils are filled with high pressure He bubbles since the solubility of He in W is ∼10 −5 at.%. This indicates that the ∼1000 K temperature fuzz-growth threshold is determined by the response of the W, not the near-surface He concentration
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Modeling the mutualistic interactions between tubeworms and microbial consortia.
Directory of Open Access Journals (Sweden)
Erik E Cordes
2005-03-01
Full Text Available The deep-sea vestimentiferan tubeworm Lamellibrachia luymesi forms large aggregations at hydrocarbon seeps in the Gulf of Mexico that may persist for over 250 y. Here, we present the results of a diagenetic model in which tubeworm aggregation persistence is achieved through augmentation of the supply of sulfate to hydrocarbon seep sediments. In the model, L. luymesi releases the sulfate generated by its internal, chemoautotrophic, sulfide-oxidizing symbionts through posterior root-like extensions of its body. The sulfate fuels sulfate reduction, commonly coupled to anaerobic methane oxidation and hydrocarbon degradation by bacterial-archaeal consortia. If sulfate is released by the tubeworms, sulfide generation mainly by hydrocarbon degradation is sufficient to support moderate-sized aggregations of L. luymesi for hundreds of years. The results of this model expand our concept of the potential benefits derived from complex interspecific relationships, in this case involving members of all three domains of life.
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International Nuclear Information System (INIS)
Hirooka, Y.; Conn, R.W.; Goebel, D.M.; LaBombard, B.; Lehmer, R.; Leung, W.K.; Nygren, R.E.; Ra, Y.
1988-06-01
Deuterium plasma recycling and chemical erosion behavior of selected graphite materials have been investigated using the PISCES-A facility. These materials include: Pyro-graphite; 2D-graphite weave; 4D-graphite weave; and POCO-graphite. Deuterium plasma bombardment conditions are: fluxes around 7 /times/ 10 17 ions s/sup /minus/1/cm/sup /minus/2/; exposure time in the range from 10 to 100 s; bombarding energy of 300 eV; and graphite temperatures between 20 and 120/degree/C. To reduce deuterium plasma recycling, several approaches have been investigated. Erosion due to high-fluence helium plasma conditioning significantly increases the surface porosity of POCO-graphite and 4D-graphite weave whereas little change for 2D-graphite weave and Pyro-graphite. The increased pore openings and refreshed in-pore surface sites are found to reduce the deuterium plasma recycling and chemical erosion rates at transient stages. The steady state recycling rates for these graphite materials can be also correlated to the surface porosity. Surface topographical modification by machined-grooves noticeably reduces the steady state deuterium recycling rate and the impurity emission from the surface. These surface topography effects are attributed to co-deposition of remitted deuterium, chemically sputtered hydrocarbon and physically sputtered carbon under deuterium plasma bombardment. The co-deposited film is found to have a characteristic surface morphology with dendritic microstructures. 18 ref., 4 figs., 1 tab
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Hydrogen isotope transport across tungsten surfaces exposed to a fusion relevant He ion fluence
Baldwin, M. J.; Doerner, R. P.
2017-07-01
Tungsten targets are exposed to controlled sequences of D2 and He, and He and D2 plasma in the Pisces-A linear plasma device, with a view to studying the outward and inward transport of D across a He implanted surface, using thermal desorption mass spectrometry. Differences in transport are interpreted from changes in peak desorption temperature and amplitude for D2 release, compared against that of control targets exposed to just D2 plasma. Desorption data are modeled with Tmap-7 to infer the nature by which He leads to the ‘reduced inventory’ effect for H isotope uptake. A dual segment (surface-30 nm, bulk) W Tmap-7 model is developed, that simulates both plasma exposure and thermal desorption. Good agreement between desorption data and model is found for D2 release from control targets provided that the implanted flux is reduced, similar to that reported by others. For He affected release, the H isotope transport properties of the surface segment are adjusted away from control target bulk values during the computation. Modeling that examines outward D transport through the He implanted layer suggests that a permeation barrier is active, but bubble induced porosity is insufficient to fully explain the barrier strength. Moderately increased diffusional migration energy in the model over the He affected region, however, gives a barrier strength consistent with experiment. The same model, applied to inward transport, predicts the reduced inventory effect, but a further reduction in the implanted D flux is necessary for precise agreement.
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Arellano, Shawn M.
2012-10-11
The encrusting sponge Myxilla (Ectyomyxilla) methanophila (Poecilosclerida: Myxillidae) is an epibiont on vestimentiferan tubeworms at hydrocarbon seeps on the upper Louisiana slope of the Gulf of Mexico. It has long been suggested that this sponge harbors methylotrophic bacteria due to its low δ13C value and high methanol dehydrogenase activity, yet the full community of microbial associations in M. methanophila remained uncharacterized. In this study, we sequenced 16S rRNA genes representing the microbial community in M. methanophila collected from two hydrocarbon-seep sites (GC234 and Bush Hill) using both Sanger sequencing and next-generation 454 pyrosequencing technologies. Additionally, we compared the microbial community in M. methanophila to that of the biofilm collected from the associated tubeworm. Our results revealed that the microbial diversity in the sponges from both sites was low but the community structure was largely similar, showing a high proportion of methylotrophic bacteria of the genus Methylohalomonas and polycyclic aromatic hydrocarbon (PAH)-degrading bacteria of the genera Cycloclasticus and Neptunomonas. Furthermore, the sponge microbial clone library revealed the dominance of thioautotrophic gammaproteobacterial symbionts in M. methanophila. In contrast, the biofilm communities on the tubeworms were more diverse and dominated by the chemoorganotrophic Moritella at GC234 and methylotrophic Methylomonas and Methylohalomonas at Bush Hill. Overall, our study provides evidence to support previous suggestion that M. methanophila harbors methylotrophic symbionts and also reveals the association of PAH-degrading and thioautotrophic microbes in the sponge. © 2012 Springer Science+Business Media New York.
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Arellano, Shawn M; Lee, On On; Lafi, Feras F; Yang, Jiangke; Wang, Yong; Young, Craig M; Qian, Pei-Yuan
2013-02-01
The encrusting sponge Myxilla (Ectyomyxilla) methanophila (Poecilosclerida: Myxillidae) is an epibiont on vestimentiferan tubeworms at hydrocarbon seeps on the upper Louisiana slope of the Gulf of Mexico. It has long been suggested that this sponge harbors methylotrophic bacteria due to its low δ(13)C value and high methanol dehydrogenase activity, yet the full community of microbial associations in M. methanophila remained uncharacterized. In this study, we sequenced 16S rRNA genes representing the microbial community in M. methanophila collected from two hydrocarbon-seep sites (GC234 and Bush Hill) using both Sanger sequencing and next-generation 454 pyrosequencing technologies. Additionally, we compared the microbial community in M. methanophila to that of the biofilm collected from the associated tubeworm. Our results revealed that the microbial diversity in the sponges from both sites was low but the community structure was largely similar, showing a high proportion of methylotrophic bacteria of the genus Methylohalomonas and polycyclic aromatic hydrocarbon (PAH)-degrading bacteria of the genera Cycloclasticus and Neptunomonas. Furthermore, the sponge microbial clone library revealed the dominance of thioautotrophic gammaproteobacterial symbionts in M. methanophila. In contrast, the biofilm communities on the tubeworms were more diverse and dominated by the chemoorganotrophic Moritella at GC234 and methylotrophic Methylomonas and Methylohalomonas at Bush Hill. Overall, our study provides evidence to support previous suggestion that M. methanophila harbors methylotrophic symbionts and also reveals the association of PAH-degrading and thioautotrophic microbes in the sponge.
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International Nuclear Information System (INIS)
Miyamoto, M.; Morito, S.; Ono, K.; Nishijima, D.; Doerner, R.P.; Baldwin, M.J.; Hanna, J.; Ueda, Y.; Kurishita, H.
2009-01-01
Blister formation and D retention in W have been investigated for low energy (∼55 ± 15 eV), high flux (∼10 22 m -2 s -1 ), high fluence (≤4.5 x 10 26 m -2 ) ion bombardment at moderate temperature (∼573 K) in mixed species D+He plasmas in the linear divertor plasma simulator PISCES-A. The amount of D retained in W is found to decrease significantly when compared with that in W exposed to pure D plasmas, as measured with high resolution thermal desorption spectroscopy. Scanning electron microscopy observations reveal the suppression of the blisters, a surface feature known to drive up retention, in the D + He mixture plasma exposed W samples. Reduced D retention is accompanied by the formation of nano-sized high density He bubbles in the near surface, observed with a transmission electron microscope (TEM). It is believed that the nano-bubbles act as a diffusion barrier to implanted D atoms and consequently reduce the amount of uptake in the W material. This newly observed effect implies that current predictions of D retention in W, in actual fusion devices, may be overestimated, since there will be He ash in fusion plasma. Toughness enhanced, fine-grained (grain size of ∼1 μm) W-TiC samples, exposed to pure D plasma conditions, also show little or no evidence of blistering. The measured D retention in the W-TiC samples was approximately 1 x 10 19 D m -2 corresponding to about 2 x 10 -7 of the implanted D fluence, and is very low compared with the retention in pure stress relieved W, which exhibited surface blisters and had a D retention of about 1 x 10 21 D m -2 .
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Discovery of a chemosynthesis-based community in the western South Atlantic Ocean
Giongo, Adriana; Haag, Taiana; Simão, Taiz L. Lopes; Medina-Silva, Renata; Utz, Laura R. P.; Bogo, Maurício R.; Bonatto, Sandro L.; Zamberlan, Priscilla M.; Augustin, Adolpho H.; Lourega, Rogério V.; Rodrigues, Luiz F.; Sbrissa, Gesiane F.; Kowsmann, Renato O.; Freire, Antonio F. M.; Miller, Dennis J.; Viana, Adriano R.; Ketzer, João M. M.; Eizirik, Eduardo
2016-06-01
Chemosynthetic communities have been described from a variety of deep-sea environments across the world's oceans. They constitute very interesting biological systems in terms of their ecology, evolution and biogeography, and also given their potential as indicators of the presence and abundance of consistent hydrocarbon-based nutritional sources. Up to now such peculiar biotic assemblages have not been reported for the western South Atlantic Ocean, leaving this large region undocumented with respect to the presence, composition and history of such communities. Here we report on the presence of a chemosynthetic community off the coast of southern Brazil, in an area where high-levels of methane and the presence of gas hydrates have been detected. We performed metagenomic analyses of the microbial community present at this site, and also employed molecular approaches to identify components of its benthic fauna. We conducted phylogenetic analyses comparing the components of this assemblage to those found elsewhere in the world, which allowed a historical assessment of the structure and dynamics of these systems. Our results revealed that the microbial community at this site is quite diverse, and contains many components that are very closely related to lineages previously sampled in ecologically similar environments across the globe. Anaerobic methanotrophic (ANME) archaeal groups were found to be very abundant at this site, suggesting that methane is indeed an important source of nutrition for this community. In addition, we document the presence at this site of a vestimentiferan siboglinid polychaete and the bivalve Acharax sp., both of which are typical components of deep-sea chemosynthetic communities. The remarkable similarity in biotic composition between this area and other deep-sea communities across the world supports the interpretation that these assemblages are historically connected across the global oceans, undergoing colonization from distant sites and
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Pito Seamount revisited: the discovery and mapping of new black smoker vents
Cheadle, M. J.; John, B. E.; German, C. R.; Gee, J. S.; Coogan, L. A.; Gillis, K. M.; Swapp, S.
2017-12-01
In February 2017, the RV Atlantis PMaG (PaleoMagnetism and Gabbro) cruise re-visited a black smoker site originally discovered 24 years ago on Pito Seamount, by the submersible Nautile during the French Pito expedition (1993). Pito Seamount (111.639oW, 23.333oS) marks the northern tip of the propagating East Pacific Rise, bounding the east side of the Easter Microplate. There the seafloor rises to 2250mbsl and has a 900m wide, 50m deep axial valley, which hosts at least two separate fields of active hydrothermal vents. AUV Sentry mapping of the summit of Pito seamount (0.5-1m resolution) highlights over 50 active and inactive chimneys amid recent basaltic sheet flows, pillow mounds and ponded lava. The vents occur in two fields/sub-fields; the first covers an area of 800 x 200m, and lies parallel to the ridge axis, along incipient faults forming on the northeastern flank of the axial valley. The second field occurs in a 250m diameter area in the centre of the axial valley. Jason II dive 961 visited, sampled, measured vent orifice temperatures, and acquired 4k video of the chimneys, and re-discovered the active (Magnificent Village) vent first found by Nautile, in the now named Nautile vent field, together with five additional active hydrothermal vents (Jason, Medea, Sentry, Abe and Scotty's Castle). The Magnificent Village, the largest active vent, is 25m tall and has multiple active spires in three main groups surrounding a hollow amphitheater. Measured vent orifice temperatures ranged from 338oC (Magnificent Village) to 370oC (Jason). The vents host a fauna of alvinellid worms, bythograidid crabs, alvincardid shrimps, phymorhynchus gastropods, Corallimorphid anenomes and bathymodiolid mussels, but no vestimentiferan worms. Brisingid brittle stars colonize inactive chimneys.
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ALVIN investigation of an active propagating rift system, Galapagos 95.5° W
Hey, R.N.; Sinton, J.M.; Kleinrock, M.C.; Yonover, R.N.; MacDonald, K.C.; Miller, S.P.; Searle, R.C.; Christie, D.M.; Atwater, T.M.; Sleep, Norman H.; Johnson, H. Paul; Neal, C.A.
1992-01-01
ALVIN investigations have defined the fine-scale structural and volcanic patterns produced by active rift and spreading center propagation and failure near 95.5° W on the Galapagos spreading center. Behind the initial lithospheric rifting, which is propagating nearly due west at about 50 km m.y.−1, a triangular block of preexisting lithosphere is being stretched and fractured, with some recent volcanism along curving fissures. A well-organized seafloor spreading center, an extensively faulted and fissured volcanic ridge, develops ~ 10 km (~ 200,000 years) behind the tectonic rift tip. Regional variations in the chemical compositions of the youngest lavas collected during this program contrast with those encompassing the entire 3 m.y. of propagation history for this region. A maximum in degree of magmatic differentiation occurs about 9 km behind the propagating rift tip, in a region of diffuse rifting. The propagating spreading center shows a gentle gradient in magmatic differentiation culminating at the SW-curving spreading center tip. Except for the doomed rift, which is in a constructional phase, tectonic activity also dominates over volcanic activity along the failing spreading system. In contrast to the propagating rift, failing rift lavas show a highly restricted range of compositions consistent with derivation from a declining upwelling zone accompanying rift failure. The lithosphere transferred from the Cocos to the Nazca plate by this propagator is extensively faulted and characterized by ubiquitous talus in one of the most tectonically disrupted areas of seafloor known. The pseudofault scarps, where the preexisting lithosphere was rifted apart, appear to include both normal and propagator lavas and are thus more lithologically complex than previously thought. Biological communities, probably vestimentiferan tubeworms, occur near the top of the outer pseudofault scarp, although no hydrothermal venting was observed.
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Directory of Open Access Journals (Sweden)
M. Taviani
2013-07-01
Full Text Available The geo-biological exploration of a pockmark field located at ca. 800 m below sea level in the Gela basin (Strait of Sicily, Central Mediterranean provided a relatively diverse chemosymbiotic community and methane-imprinted carbonates. To date, this is the first occurrence of such a type of specialised deep-water cold-seep communities recorded from this key region, before documented in the Mediterranean as rather disjunct findings in its eastern and westernmost basins. The thiotrophic chemosymbiotic organisms recovered from this area include empty tubes of the vestimentiferan Lamellibrachia sp., loose and articulated shells of lucinids (Lucinoma kazani, Myrtea amorpha, vesicomyids (Isorropodon perplexum, and gastropods (Taranis moerchii. A callianassid decapod (Calliax sp. was consistently found alive in large numbers in the pockmark mud. Their post-mortem calcified parts mixed with molluscs and subordinately miliolid foraminifers form a distinct type of skeletal assemblage. Carbonate concretions display δ13C values as low as −40‰ PDB suggesting the occurrence of light hydrocarbons in the seeping fluids. Since none of the truly chemosymbiotic organisms was found alive, although their skeletal parts appear at times very fresh, some specimens have been AMS-14C dated to shed light on the historical evolution of this site. Lamellibrachiav and Lucinoma are two of the most significant chemosymbiotic taxa reported from various Mediterranean cold seep sites (Alboran Sea and Eastern basin. Specimens from station MEDCOR78 (pockmark #1, Lat. 36°46´10.18" N, Long. 14°01´31.59" E, 815 m below sea level provided ages of 11736 ± 636 yr cal BP (Lamellibrachia sp., and 9609.5 ± 153.5 yr cal BP (L. kazani. One shell of M. amorpha in core MEDCOR81 (pockmark #6, Lat 36°45´38.89" N, Long 14°00´07.58" E, 822 m below sea level provided a sub-modern age of 484 ± 54 yr cal BP. These ages document that fluid seepage at this pockmark site has been
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Sanchez, Sophie; Hourdez, Stéphane; Lallier, François H
2007-09-24
Since its discovery around deep sea hydrothermal vents of the Galapagos Rift about 30 years ago, the chemoautotrophic symbiosis between the vestimentiferan tubeworm Riftia pachyptila and its symbiotic sulfide-oxidizing gamma-proteobacteria has been extensively studied. However, studies on the tubeworm host were essentially targeted, biochemical approaches. We decided to use a global molecular approach to identify new proteins involved in metabolite exchanges and assimilation by the host. We used a Subtractive Suppression Hybridization approach (SSH) in an unusual way, by comparing pairs of tissues from a single individual. We chose to identify the sequences preferentially expressed in the branchial plume tissue (the only organ in contact with the sea water) and in the trophosome (the organ housing the symbiotic bacteria) using the body wall as a reference tissue because it is supposedly not involved in metabolite exchanges in this species. We produced four cDNA libraries: i) body wall-subtracted branchial plume library (BR-BW), ii) and its reverse library, branchial plume-subtracted body wall library (BW-BR), iii) body wall-subtracted trophosome library (TR-BW), iv) and its reverse library, trophosome-subtracted body wall library (BW-TR). For each library, we sequenced about 200 clones resulting in 45 different sequences on average in each library (58 and 59 cDNAs for BR-BW and TR-BW libraries respectively). Overall, half of the contigs matched records found in the databases with good E-values. After quantitative PCR analysis, it resulted that 16S, Major Vault Protein, carbonic anhydrase (RpCAbr), cathepsin and chitinase precursor transcripts were highly represented in the branchial plume tissue compared to the trophosome and the body wall tissues, whereas carbonic anhydrase (RpCAtr), myohemerythrin, a putative T-Cell receptor and one non identified transcript were highly specific of the trophosome tissue. Quantitative PCR analyses were congruent with our libraries
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Directory of Open Access Journals (Sweden)
Lallier François H
2007-09-01
Full Text Available Abstract Background Since its discovery around deep sea hydrothermal vents of the Galapagos Rift about 30 years ago, the chemoautotrophic symbiosis between the vestimentiferan tubeworm Riftia pachyptila and its symbiotic sulfide-oxidizing γ-proteobacteria has been extensively studied. However, studies on the tubeworm host were essentially targeted, biochemical approaches. We decided to use a global molecular approach to identify new proteins involved in metabolite exchanges and assimilation by the host. We used a Subtractive Suppression Hybridization approach (SSH in an unusual way, by comparing pairs of tissues from a single individual. We chose to identify the sequences preferentially expressed in the branchial plume tissue (the only organ in contact with the sea water and in the trophosome (the organ housing the symbiotic bacteria using the body wall as a reference tissue because it is supposedly not involved in metabolite exchanges in this species. Results We produced four cDNA libraries: i body wall-subtracted branchial plume library (BR-BW, ii and its reverse library, branchial plume-subtracted body wall library (BW-BR, iii body wall-subtracted trophosome library (TR-BW, iv and its reverse library, trophosome-subtracted body wall library (BW-TR. For each library, we sequenced about 200 clones resulting in 45 different sequences on average in each library (58 and 59 cDNAs for BR-BW and TR-BW libraries respectively. Overall, half of the contigs matched records found in the databases with good E-values. After quantitative PCR analysis, it resulted that 16S, Major Vault Protein, carbonic anhydrase (RpCAbr, cathepsin and chitinase precursor transcripts were highly represented in the branchial plume tissue compared to the trophosome and the body wall tissues, whereas carbonic anhydrase (RpCAtr, myohemerythrin, a putative T-Cell receptor and one non identified transcript were highly specific of the trophosome tissue. Conclusion Quantitative PCR
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Mercury in the atmospheric and coastal environments of Mexico.
Ruelas-Inzunza, Jorge; Delgado-Alvarez, Carolina; Frías-Espericueta, Martín; Páez-Osuna, Federico
2013-01-01
the animals.Other organisms like macroalgae and vestimentiferan tube worms were used to monitor the occurrence of Hg in the aquatic environment; levels were comparable to data reported on similar organisms from other areas of the world. Few investigation shave been carried out concerning the mercury content in human organs/tissues in Mexico. Considering the potential deleterious effects of Hg on kidney, lung, and the central nervous system, more information about human exposure to organic and inorganic forms of mercury and their effects is needed, both in Mexico and elsewhere.