WorldWideScience

Sample records for varying geometries reproduces

  1. Fate of methanol spills into rivers of varying geometry

    International Nuclear Information System (INIS)

    Jamali, M.; Lawrence, G.A.; Maloney, K.

    2002-01-01

    This paper describes the results of a study of potential environmental impacts of methanol releases into rivers. A number of hypothetical scenarios are defined, and dispersion of methanol in the selected rivers is investigated using a riverine dispersion-biodegradation model. The downstream variability of river flow and hydraulic geometry due to merging tributaries are included in the model. The model results are presented, and comparison is made with proposed allowable concentrations. An interesting finding is that the river variation has considerable effect on concentration distribution of methanol in the most critical scenario. A sensitivity analysis is made on the key modeling parameters such as the dispersion coefficient and the biodegradation rate. An analysis illustrating when water intake systems should potentially be shutdown in the event of a methanol release is also presented. In general, it is found the human health risks associated with the accidental release of methanol into riverine environments are low. (author)

  2. Cinema audiences reproducibly vary the chemical composition of air during films, by broadcasting scene specific emissions on breath

    Science.gov (United States)

    Williams, Jonathan; Stönner, Christof; Wicker, Jörg; Krauter, Nicolas; Derstroff, Bettina; Bourtsoukidis, Efstratios; Klüpfel, Thomas; Kramer, Stefan

    2016-05-01

    Human beings continuously emit chemicals into the air by breath and through the skin. In order to determine whether these emissions vary predictably in response to audiovisual stimuli, we have continuously monitored carbon dioxide and over one hundred volatile organic compounds in a cinema. It was found that many airborne chemicals in cinema air varied distinctively and reproducibly with time for a particular film, even in different screenings to different audiences. Application of scene labels and advanced data mining methods revealed that specific film events, namely “suspense” or “comedy” caused audiences to change their emission of specific chemicals. These event-type synchronous, broadcasted human chemosignals open the possibility for objective and non-invasive assessment of a human group response to stimuli by continuous measurement of chemicals in air. Such methods can be applied to research fields such as psychology and biology, and be valuable to industries such as film making and advertising.

  3. Cinema audiences reproducibly vary the chemical composition of air during films, by broadcasting scene specific emissions on breath.

    Science.gov (United States)

    Williams, Jonathan; Stönner, Christof; Wicker, Jörg; Krauter, Nicolas; Derstroff, Bettina; Bourtsoukidis, Efstratios; Klüpfel, Thomas; Kramer, Stefan

    2016-05-10

    Human beings continuously emit chemicals into the air by breath and through the skin. In order to determine whether these emissions vary predictably in response to audiovisual stimuli, we have continuously monitored carbon dioxide and over one hundred volatile organic compounds in a cinema. It was found that many airborne chemicals in cinema air varied distinctively and reproducibly with time for a particular film, even in different screenings to different audiences. Application of scene labels and advanced data mining methods revealed that specific film events, namely "suspense" or "comedy" caused audiences to change their emission of specific chemicals. These event-type synchronous, broadcasted human chemosignals open the possibility for objective and non-invasive assessment of a human group response to stimuli by continuous measurement of chemicals in air. Such methods can be applied to research fields such as psychology and biology, and be valuable to industries such as film making and advertising.

  4. Analysis of image sharpness reproducibility on a novel engineered micro-CT scanner with variable geometry and embedded recalibration software.

    Science.gov (United States)

    Panetta, D; Belcari, N; Del Guerra, A; Bartolomei, A; Salvadori, P A

    2012-04-01

    This study investigates the reproducibility of the reconstructed image sharpness, after modifications of the geometry setup, for a variable magnification micro-CT (μCT) scanner. All the measurements were performed on a novel engineered μCT scanner for in vivo imaging of small animals (Xalt), which has been recently built at the Institute of Clinical Physiology of the National Research Council (IFC-CNR, Pisa, Italy), in partnership with the University of Pisa. The Xalt scanner is equipped with an integrated software for on-line geometric recalibration, which will be used throughout the experiments. In order to evaluate the losses of image quality due to modifications of the geometry setup, we have made 22 consecutive acquisitions by changing alternatively the system geometry between two different setups (Large FoV - LF, and High Resolution - HR). For each acquisition, the tomographic images have been reconstructed before and after the on-line geometric recalibration. For each reconstruction, the image sharpness was evaluated using two different figures of merit: (i) the percentage contrast on a small bar pattern of fixed frequency (f = 5.5 lp/mm for the LF setup and f = 10 lp/mm for the HR setup) and (ii) the image entropy. We have found that, due to the small-scale mechanical uncertainty (in the order of the voxel size), a recalibration is necessary for each geometric setup after repositioning of the system's components; the resolution losses due to the lack of recalibration are worse for the HR setup (voxel size = 18.4 μm). The integrated on-line recalibration algorithm of the Xalt scanner allowed to perform the recalibration quickly, by restoring the spatial resolution of the system to the reference resolution obtained after the initial (off-line) calibration. Copyright © 2011 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

  5. Geometries

    CERN Document Server

    Sossinsky, A B

    2012-01-01

    The book is an innovative modern exposition of geometry, or rather, of geometries; it is the first textbook in which Felix Klein's Erlangen Program (the action of transformation groups) is systematically used as the basis for defining various geometries. The course of study presented is dedicated to the proposition that all geometries are created equal--although some, of course, remain more equal than others. The author concentrates on several of the more distinguished and beautiful ones, which include what he terms "toy geometries", the geometries of Platonic bodies, discrete geometries, and classical continuous geometries. The text is based on first-year semester course lectures delivered at the Independent University of Moscow in 2003 and 2006. It is by no means a formal algebraic or analytic treatment of geometric topics, but rather, a highly visual exposition containing upwards of 200 illustrations. The reader is expected to possess a familiarity with elementary Euclidean geometry, albeit those lacking t...

  6. Numerical modelling of flow structures over idealized transverse aeolian dunes of varying geometry

    Science.gov (United States)

    Parsons, Daniel R.; Walker, Ian J.; Wiggs, Giles F. S.

    2004-04-01

    A Computational Fluid Dynamics (CFD) model (PHOENICS™ 3.5) previously validated for wind tunnel measurements is used to simulate the streamwise and vertical velocity flow fields over idealized transverse dunes of varying height ( h) and stoss slope basal length ( L). The model accurately reproduced patterns of: flow deceleration at the dune toe; stoss flow acceleration; vertical lift in the crest region; lee-side flow separation, re-attachment and reversal; and flow recovery distance. Results indicate that the flow field over transverse dunes is particularly sensitive to changes in dune height, with an increase in height resulting in flow deceleration at the toe, streamwise acceleration and vertical lift at the crest, and an increase in the extent of, and strength of reversed flows within, the lee-side separation cell. In general, the length of the separation zone varied from 3 to 15 h from the crest and increased over taller, steeper dunes. Similarly, the flow recovery distance ranged from 45 to >75 h and was more sensitive to changes in dune height. For the range of dune shapes investigated in this study, the differing effects of height and stoss slope length raise questions regarding the applicability of dune aspect ratio as a parameter for explaining airflow over transverse dunes. Evidence is also provided to support existing research on: streamline curvature and the maintenance of sand transport in the toe region; vertical lift in the crest region and its effect on grainfall delivery; relations between the turbulent shear layer and downward forcing of flow re-attachment; and extended flow recovery distances beyond the separation cell. Field validation is required to test these findings in natural settings. Future applications of the model will characterize turbulence and shear stress fields, examine the effects of more complex isolated dune forms and investigate flow over multiple dunes.

  7. Geometry

    Indian Academy of Sciences (India)

    . In the previous article we looked at the origins of synthetic and analytic geometry. More practical minded people, the builders and navigators, were studying two other aspects of geometry- trigonometry and integral calculus. These are actually ...

  8. Geometry

    CERN Document Server

    Prasolov, V V

    2015-01-01

    This book provides a systematic introduction to various geometries, including Euclidean, affine, projective, spherical, and hyperbolic geometries. Also included is a chapter on infinite-dimensional generalizations of Euclidean and affine geometries. A uniform approach to different geometries, based on Klein's Erlangen Program is suggested, and similarities of various phenomena in all geometries are traced. An important notion of duality of geometric objects is highlighted throughout the book. The authors also include a detailed presentation of the theory of conics and quadrics, including the theory of conics for non-Euclidean geometries. The book contains many beautiful geometric facts and has plenty of problems, most of them with solutions, which nicely supplement the main text. With more than 150 figures illustrating the arguments, the book can be recommended as a textbook for undergraduate and graduate-level courses in geometry.

  9. Stope gully support and sidings geometry at all depths and at varying dip.

    CSIR Research Space (South Africa)

    Naidoo, K

    2002-08-01

    Full Text Available layout 149 5.4 Three dimensional analyses of gully layouts 152 5.4.1 Description of three – dimensional model geometries 152 5.4.2 Single step FLAC3D models 154 5.4.2.1 Analysis method 154 5.4.2.2 General comparison of ASG versus heading cases 154 5.4... ON UNDERGROUND INSPECTIONS 72 4.1 Introduction 72 4.2 Rating of gully conditions 72 4.3 Mining practice compliance with mine standards 72 4.4 Summary of observed gully behaviour resulting from geometry, stress state and ground conditions 80 4.4.1 Shallow...

  10. Geometry

    CERN Document Server

    Pedoe, Dan

    1988-01-01

    ""A lucid and masterly survey."" - Mathematics Gazette Professor Pedoe is widely known as a fine teacher and a fine geometer. His abilities in both areas are clearly evident in this self-contained, well-written, and lucid introduction to the scope and methods of elementary geometry. It covers the geometry usually included in undergraduate courses in mathematics, except for the theory of convex sets. Based on a course given by the author for several years at the University of Minnesota, the main purpose of the book is to increase geometrical, and therefore mathematical, understanding and to he

  11. Investigating fluvial pattern and delta-planform geometry based on varying intervals of flood and interflood

    Science.gov (United States)

    Rambo, J. E.; Kim, W.; Miller, K.

    2017-12-01

    Physical modeling of a delta's evolution can represent how changing the intervals of flood and interflood can alter a delta's fluvial pattern and geometry. Here we present a set of six experimental runs in which sediment and water were discharged at constant rates over each experiment. During the "flood" period, both sediment and water were discharged at rates of 0.25 cm3/s and 15 ml/s respectively, and during the "interflood" period, only water was discharged at 7.5 ml/s. The flood periods were only run for 30 minutes to keep the total volume of sediment constant. Run 0 did not have an interflood period and therefore ran with constant sediment and water discharge for the duration of the experiment.The other five runs had either 5, 10, or 15-min intervals of flood with 5, 10, or 15-min intervals of interflood. The experimental results show that Run 0 had the smallest topset area. This is due to a lack of surface reworking that takes place during interflood periods. Run 1 had 15-minute intervals of flood and 15-minute intervals of interflood, and it had the largest topset area. Additionally, the experiments that had longer intervals of interflood than flood had more elongated delta geometries. Wetted fraction color maps were also created to plot channel locations during each run. The maps show that the runs with longer interflood durations had channels occurring predominantly down the middle with stronger incisions; these runs produced deltas with more elongated geometries. When the interflood duration was even longer, however, strong channels started to occur at multiple locations. This increased interflood period allowed for the entire area over the delta's surface to be reworked, thus reducing the downstream slope and allowing channels to be more mobile laterally. Physical modeling of a delta allows us to predict a delta's resulting geometry given a set of conditions. This insight is needed especially with delta's being the home to many populations of people and

  12. Effects of varying laser trimming geometries on thin film\\ud resistors

    OpenAIRE

    Alafogianni, Maria; Birkett, Martin; Penlington, Roger

    2017-01-01

    Purpose - This paper studies the effects of varying laser trim patterns on several performance parameters of thin film resistors such as the temperature coefficient of resistance (TCR) and target resistance value.\\ud \\ud Design/methodology/approach - The benefits and limitations of basic trim patterns are taken into consideration and the plunge cut, double plunge cut and the curved L-cut were selected to be modelled and tested experimentally. A computer simulation of the laser trim patterns h...

  13. DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations

    Science.gov (United States)

    Rusling, David A.; Laurens, Niels; Pernstich, Christian; Wuite, Gijs J. L.; Halford, Stephen E.

    2012-01-01

    Most restriction endonucleases, including FokI, interact with two copies of their recognition sequence before cutting DNA. On DNA with two sites they act in cis looping out the intervening DNA. While many restriction enzymes operate symmetrically at palindromic sites, FokI acts asymmetrically at a non-palindromic site. The directionality of its sequence means that two FokI sites can be bridged in either parallel or anti-parallel alignments. Here we show by biochemical and single-molecule biophysical methods that FokI aligns two recognition sites on separate DNA molecules in parallel and that the parallel arrangement holds for sites in the same DNA regardless of whether they are in inverted or repeated orientations. The parallel arrangement dictates the topology of the loop trapped between sites in cis: the loop from inverted sites has a simple 180° bend, while that with repeated sites has a convoluted 360° turn. The ability of FokI to act at asymmetric sites thus enabled us to identify the synapse geometry for sites in trans and in cis, which in turn revealed the relationship between synapse geometry and loop topology. PMID:22362745

  14. Solution of Einstein's Geometrical Gravitational Field Equations Exterior to Astrophysically Real or Hypothetical Time Varying Distributions of Mass within Regions of Spherical Geometry

    Directory of Open Access Journals (Sweden)

    Chifu E. N.

    2009-07-01

    Full Text Available Here, we present a profound and complete analytical solution to Einstein’s gravitational field equations exterior to astrophysically real or hypothetical time varying distribu- tions of mass or pressure within regions of spherical geometry. The single arbitrary function f in our proposed exterior metric tensor and constructed field equations makes our method unique, mathematically less combersome and astrophysically satisfactory. The obtained solution of Einstein’s gravitational field equations tends out to be a gen- eralization of Newton’s gravitational scalar potential exterior to the spherical mass or pressure distribution under consideration

  15. VARI-QUIR-3, 2-D Multigroup Steady-State Neutron Diffusion in X-Y R-Z or R-Theta Geometry

    International Nuclear Information System (INIS)

    Collier, George

    1984-01-01

    1 - Nature of physical problem solved: The steady-state, multigroup, two-dimensional neutron diffusion equations are solved in x-y, r-z, and r-theta geometry. 2 - Method of solution: A Gauss-Seidel type of solution with inner and outer iterations is used. The source is held constant during the inner iterations

  16. Geometry Revealed

    CERN Document Server

    Berger, Marcel

    2010-01-01

    Both classical geometry and modern differential geometry have been active subjects of research throughout the 20th century and lie at the heart of many recent advances in mathematics and physics. The underlying motivating concept for the present book is that it offers readers the elements of a modern geometric culture by means of a whole series of visually appealing unsolved (or recently solved) problems that require the creation of concepts and tools of varying abstraction. Starting with such natural, classical objects as lines, planes, circles, spheres, polygons, polyhedra, curves, surfaces,

  17. Spinning geometry = Twisted geometry

    International Nuclear Information System (INIS)

    Freidel, Laurent; Ziprick, Jonathan

    2014-01-01

    It is well known that the SU(2)-gauge invariant phase space of loop gravity can be represented in terms of twisted geometries. These are piecewise-linear-flat geometries obtained by gluing together polyhedra, but the resulting geometries are not continuous across the faces. Here we show that this phase space can also be represented by continuous, piecewise-flat three-geometries called spinning geometries. These are composed of metric-flat three-cells glued together consistently. The geometry of each cell and the manner in which they are glued is compatible with the choice of fluxes and holonomies. We first remark that the fluxes provide each edge with an angular momentum. By studying the piecewise-flat geometries which minimize edge lengths, we show that these angular momenta can be literally interpreted as the spin of the edges: the geometries of all edges are necessarily helices. We also show that the compatibility of the gluing maps with the holonomy data results in the same conclusion. This shows that a spinning geometry represents a way to glue together the three-cells of a twisted geometry to form a continuous geometry which represents a point in the loop gravity phase space. (paper)

  18. Numerical investigation on the combined effects of varying piston bowl geometries and ramp injection rate-shapes on the combustion characteristics of a kerosene-diesel fueled direct injection compression ignition engine

    International Nuclear Information System (INIS)

    Tay, Kun Lin; Yang, Wenming; Zhao, Feiyang; Yu, Wenbin; Mohan, Balaji

    2017-01-01

    Highlights: • Effect of injection rate-shaping on heat-release is significant with less turbulence. • Two peak heat-releases are seen for the shallow-depth re-entrant piston. • Significant combustion phasing occurs with kerosene usage and high turbulence. - Abstract: In this work, the combustion characteristics of a direct injection compression ignition (DICI) engine fueled with kerosene-diesel blends, using different piston bowl geometries together with varying injection rate-shapes were investigated. A total of three combustion bowl geometries, namely the omega combustion chamber (OCC), the shallow-depth combustion chamber (SCC) and the shallow-depth re-entrant combustion chamber (SRCC), were used together with six different ramp injection rate-shapes and pure diesel, kerosene-diesel and pure kerosene fuels. It is seen that the SRCC geometry, which has the shortest throat length, gives the highest turbulence kinetic energy (TKE) and this resulted in two peak heat-releases, with a primary peak heat-release during the premixed combustion phase and a secondary peak heat-release during the mixing-controlled combustion phase. In addition, the SCC geometry gives rather distinct premixed combustion and mixing-controlled combustion phases due to the fact that combustion is predominantly controlled by the injected fuel spray itself because of less turbulence. Also, when kerosene is used in place of diesel, the heat-release during the premixed combustion phase increases and diminishes during the mixing-controlled and late combustion phases. It is interesting to note that the effect of injection rate-shaping on the heat-release rate is more obvious for bowl geometries that generate less TKE. Moreover, bowl geometries that generate higher TKEs as well as fuels with lower viscosities generally give lower carbon monoxide (CO) emissions and higher nitrogen oxide (NO) emissions. More importantly, it is possible to achieve low NO and CO emissions simultaneously by using the

  19. IMPACT OF DEPTH OF CUT ON CHIP FORMATION IN AZ91HP MAGNESIUM ALLOY MILLING WITH TOOLS OF VARYING CUTTING EDGE GEOMETRY

    Directory of Open Access Journals (Sweden)

    Olga Gziut

    2015-05-01

    Full Text Available Safety of Mg milling processes can be expressed by means of the form and the number of fractions of chips formed during milling. This paper presents the state of the art of magnesium alloys milling technology in the aspect of chip fragmentation. Furthermore, the impact of the depth of cut ap and the rake angle γ on the number of chip fractions was analysed in the study. These were conducted on AZ91HP magnesium cast alloy and milling was performed with carbide tools of varying rake angle values (γ = 5º and γ = 30º. It was observed that less intense chip fragmentation occurs with decreasing depth of cut ap. The number of chip fractions was lower at the tool rake angle of γ = 30º. The test results were formulated as technological recommendations according to the number of generated chip fractions.

  20. Modeling reproducibility of porescale multiphase flow experiments

    Science.gov (United States)

    Ling, B.; Tartakovsky, A. M.; Bao, J.; Oostrom, M.; Battiato, I.

    2017-12-01

    Multi-phase flow in porous media is widely encountered in geological systems. Understanding immiscible fluid displacement is crucial for processes including, but not limited to, CO2 sequestration, non-aqueous phase liquid contamination and oil recovery. Microfluidic devices and porescale numerical models are commonly used to study multiphase flow in biological, geological, and engineered porous materials. In this work, we perform a set of drainage and imbibition experiments in six identical microfluidic cells to study the reproducibility of multiphase flow experiments. We observe significant variations in the experimental results, which are smaller during the drainage stage and larger during the imbibition stage. We demonstrate that these variations are due to sub-porescale geometry differences in microcells (because of manufacturing defects) and variations in the boundary condition (i.e.,fluctuations in the injection rate inherent to syringe pumps). Computational simulations are conducted using commercial software STAR-CCM+, both with constant and randomly varying injection rate. Stochastic simulations are able to capture variability in the experiments associated with the varying pump injection rate.

  1. Reproducibility of a reaming test

    DEFF Research Database (Denmark)

    Pilny, Lukas; Müller, Pavel; De Chiffre, Leonardo

    2012-01-01

    The reproducibility of a reaming test was analysed to document its applicability as a performance test for cutting fluids. Reaming tests were carried out on a drilling machine using HSS reamers. Workpiece material was an austenitic stainless steel, machined using 4.75 m∙min-1 cutting speed and 0......). Process reproducibility was assessed as the ability of different operators to ensure a consistent rating of individual lubricants. Absolute average values as well as experimental standard deviations of the evaluation parameters were calculated, and uncertainty budgeting was performed. Results document...... a built-up edge occurrence hindering a robust evaluation of cutting fluid performance, if the data evaluation is based on surface finish only. Measurements of hole geometry provide documentation to recognize systematic error distorting the performance test....

  2. Reproducibility of a reaming test

    DEFF Research Database (Denmark)

    Pilny, Lukas; Müller, Pavel; De Chiffre, Leonardo

    2014-01-01

    The reproducibility of a reaming test was analysed to document its applicability as a performance test for cutting fluids. Reaming tests were carried out on a drilling machine using HSS reamers. Workpiece material was an austenitic stainless steel, machined using 4.75 m•min−1 cutting speed and 0......). Process reproducibility was assessed as the ability of different operators to ensure a consistent rating of individual lubricants. Absolute average values as well as experimental standard deviations of the evaluation parameters were calculated, and uncertainty budgeting was performed. Results document...... a built–up edge occurrence hindering a robust evaluation of cutting fluid performance, if the data evaluation is based on surface finish only. Measurements of hole geometry provide documentation to recognise systematic error distorting the performance test....

  3. Reliability versus reproducibility

    International Nuclear Information System (INIS)

    Lautzenheiser, C.E.

    1976-01-01

    Defect detection and reproducibility of results are two separate but closely related subjects. It is axiomatic that a defect must be detected from examination to examination or reproducibility of results is very poor. On the other hand, a defect can be detected on each of subsequent examinations for higher reliability and still have poor reproducibility of results

  4. The Need for Reproducibility

    Energy Technology Data Exchange (ETDEWEB)

    Robey, Robert W. [Los Alamos National Laboratory

    2016-06-27

    The purpose of this presentation is to consider issues of reproducibility, specifically it determines whether bitwise reproducible computation is possible, if computational research in DOE improves its publication process, and if reproducible results can be achieved apart from the peer review process?

  5. Hyperbolic geometry

    CERN Document Server

    Iversen, Birger

    1992-01-01

    Although it arose from purely theoretical considerations of the underlying axioms of geometry, the work of Einstein and Dirac has demonstrated that hyperbolic geometry is a fundamental aspect of modern physics

  6. Twistor geometry

    NARCIS (Netherlands)

    van den Broek, P.M.

    1984-01-01

    The aim of this paper is to give a detailed exposition of the relation between the geometry of twistor space and the geometry of Minkowski space. The paper has a didactical purpose; no use has been made of differential geometry and cohomology.

  7. Testing Reproducibility in Earth Sciences

    Science.gov (United States)

    Church, M. A.; Dudill, A. R.; Frey, P.; Venditti, J. G.

    2017-12-01

    Reproducibility represents how closely the results of independent tests agree when undertaken using the same materials but different conditions of measurement, such as operator, equipment or laboratory. The concept of reproducibility is fundamental to the scientific method as it prevents the persistence of incorrect or biased results. Yet currently the production of scientific knowledge emphasizes rapid publication of previously unreported findings, a culture that has emerged from pressures related to hiring, publication criteria and funding requirements. Awareness and critique of the disconnect between how scientific research should be undertaken, and how it actually is conducted, has been prominent in biomedicine for over a decade, with the fields of economics and psychology more recently joining the conversation. The purpose of this presentation is to stimulate the conversation in earth sciences where, despite implicit evidence in widely accepted classifications, formal testing of reproducibility is rare.As a formal test of reproducibility, two sets of experiments were undertaken with the same experimental procedure, at the same scale, but in different laboratories. Using narrow, steep flumes and spherical glass beads, grain size sorting was examined by introducing fine sediment of varying size and quantity into a mobile coarse bed. The general setup was identical, including flume width and slope; however, there were some variations in the materials, construction and lab environment. Comparison of the results includes examination of the infiltration profiles, sediment mobility and transport characteristics. The physical phenomena were qualitatively reproduced but not quantitatively replicated. Reproduction of results encourages more robust research and reporting, and facilitates exploration of possible variations in data in various specific contexts. Following the lead of other fields, testing of reproducibility can be incentivized through changes to journal

  8. Magni Reproducibility Example

    DEFF Research Database (Denmark)

    2016-01-01

    An example of how to use the magni.reproducibility package for storing metadata along with results from a computational experiment. The example is based on simulating the Mandelbrot set.......An example of how to use the magni.reproducibility package for storing metadata along with results from a computational experiment. The example is based on simulating the Mandelbrot set....

  9. Molecular geometry

    CERN Document Server

    Rodger, Alison

    1995-01-01

    Molecular Geometry discusses topics relevant to the arrangement of atoms. The book is comprised of seven chapters that tackle several areas of molecular geometry. Chapter 1 reviews the definition and determination of molecular geometry, while Chapter 2 discusses the unified view of stereochemistry and stereochemical changes. Chapter 3 covers the geometry of molecules of second row atoms, and Chapter 4 deals with the main group elements beyond the second row. The book also talks about the complexes of transition metals and f-block elements, and then covers the organometallic compounds and trans

  10. Optical geometry

    International Nuclear Information System (INIS)

    Robinson, I.; Trautman, A.

    1988-01-01

    The geometry of classical physics is Lorentzian; but weaker geometries are often more appropriate: null geodesics and electromagnetic fields, for example, are well known to be objects of conformal geometry. To deal with a single null congruence, or with the radiative electromagnetic fields associated with it, even less is needed: flag geometry for the first, optical geometry, with which this paper is chiefly concerned, for the second. The authors establish a natural one-to-one correspondence between optical geometries, considered locally, and three-dimensional Cauchy-Riemann structures. A number of Lorentzian geometries are shown to be equivalent from the optical point of view. For example the Goedel universe, the Taub-NUT metric and Hauser's twisting null solution have an optical geometry isomorphic to the one underlying the Robinson congruence in Minkowski space. The authors present general results on the problem of lifting a CR structure to a Lorentz manifold and, in particular, to Minkowski space; and exhibit the relevance of the deviation form to this problem

  11. Architectural geometry

    KAUST Repository

    Pottmann, Helmut; Eigensatz, Michael; Vaxman, Amir; Wallner, Johannes

    2014-01-01

    Around 2005 it became apparent in the geometry processing community that freeform architecture contains many problems of a geometric nature to be solved, and many opportunities for optimization which however require geometric understanding. This area of research, which has been called architectural geometry, meanwhile contains a great wealth of individual contributions which are relevant in various fields. For mathematicians, the relation to discrete differential geometry is significant, in particular the integrable system viewpoint. Besides, new application contexts have become available for quite some old-established concepts. Regarding graphics and geometry processing, architectural geometry yields interesting new questions but also new objects, e.g. replacing meshes by other combinatorial arrangements. Numerical optimization plays a major role but in itself would be powerless without geometric understanding. Summing up, architectural geometry has become a rewarding field of study. We here survey the main directions which have been pursued, we show real projects where geometric considerations have played a role, and we outline open problems which we think are significant for the future development of both theory and practice of architectural geometry.

  12. Architectural geometry

    KAUST Repository

    Pottmann, Helmut

    2014-11-26

    Around 2005 it became apparent in the geometry processing community that freeform architecture contains many problems of a geometric nature to be solved, and many opportunities for optimization which however require geometric understanding. This area of research, which has been called architectural geometry, meanwhile contains a great wealth of individual contributions which are relevant in various fields. For mathematicians, the relation to discrete differential geometry is significant, in particular the integrable system viewpoint. Besides, new application contexts have become available for quite some old-established concepts. Regarding graphics and geometry processing, architectural geometry yields interesting new questions but also new objects, e.g. replacing meshes by other combinatorial arrangements. Numerical optimization plays a major role but in itself would be powerless without geometric understanding. Summing up, architectural geometry has become a rewarding field of study. We here survey the main directions which have been pursued, we show real projects where geometric considerations have played a role, and we outline open problems which we think are significant for the future development of both theory and practice of architectural geometry.

  13. Beautiful geometry

    CERN Document Server

    Maor, Eli

    2014-01-01

    If you've ever thought that mathematics and art don't mix, this stunning visual history of geometry will change your mind. As much a work of art as a book about mathematics, Beautiful Geometry presents more than sixty exquisite color plates illustrating a wide range of geometric patterns and theorems, accompanied by brief accounts of the fascinating history and people behind each. With artwork by Swiss artist Eugen Jost and text by acclaimed math historian Eli Maor, this unique celebration of geometry covers numerous subjects, from straightedge-and-compass constructions to intriguing configur

  14. Analytische Geometrie

    Science.gov (United States)

    Kemnitz, Arnfried

    Der Grundgedanke der Analytischen Geometrie besteht darin, dass geometrische Untersuchungen mit rechnerischen Mitteln geführt werden. Geometrische Objekte werden dabei durch Gleichungen beschrieben und mit algebraischen Methoden untersucht.

  15. Algebraic geometry

    CERN Document Server

    Lefschetz, Solomon

    2005-01-01

    An introduction to algebraic geometry and a bridge between its analytical-topological and algebraical aspects, this text for advanced undergraduate students is particularly relevant to those more familiar with analysis than algebra. 1953 edition.

  16. Information geometry

    CERN Document Server

    Ay, Nihat; Lê, Hông Vân; Schwachhöfer, Lorenz

    2017-01-01

    The book provides a comprehensive introduction and a novel mathematical foundation of the field of information geometry with complete proofs and detailed background material on measure theory, Riemannian geometry and Banach space theory. Parametrised measure models are defined as fundamental geometric objects, which can be both finite or infinite dimensional. Based on these models, canonical tensor fields are introduced and further studied, including the Fisher metric and the Amari-Chentsov tensor, and embeddings of statistical manifolds are investigated. This novel foundation then leads to application highlights, such as generalizations and extensions of the classical uniqueness result of Chentsov or the Cramér-Rao inequality. Additionally, several new application fields of information geometry are highlighted, for instance hierarchical and graphical models, complexity theory, population genetics, or Markov Chain Monte Carlo. The book will be of interest to mathematicians who are interested in geometry, inf...

  17. Preserve specimens for reproducibility

    Czech Academy of Sciences Publication Activity Database

    Krell, F.-T.; Klimeš, Petr; Rocha, L. A.; Fikáček, M.; Miller, S. E.

    2016-01-01

    Roč. 539, č. 7628 (2016), s. 168 ISSN 0028-0836 Institutional support: RVO:60077344 Keywords : reproducibility * specimen * biodiversity Subject RIV: EH - Ecology, Behaviour Impact factor: 40.137, year: 2016 http://www.nature.com/nature/journal/v539/n7628/full/539168b.html

  18. Analytic geometry

    CERN Document Server

    Burdette, A C

    1971-01-01

    Analytic Geometry covers several fundamental aspects of analytic geometry needed for advanced subjects, including calculus.This book is composed of 12 chapters that review the principles, concepts, and analytic proofs of geometric theorems, families of lines, the normal equation of the line, and related matters. Other chapters highlight the application of graphing, foci, directrices, eccentricity, and conic-related topics. The remaining chapters deal with the concept polar and rectangular coordinates, surfaces and curves, and planes.This book will prove useful to undergraduate trigonometric st

  19. Vector geometry

    CERN Document Server

    Robinson, Gilbert de B

    2011-01-01

    This brief undergraduate-level text by a prominent Cambridge-educated mathematician explores the relationship between algebra and geometry. An elementary course in plane geometry is the sole requirement for Gilbert de B. Robinson's text, which is the result of several years of teaching and learning the most effective methods from discussions with students. Topics include lines and planes, determinants and linear equations, matrices, groups and linear transformations, and vectors and vector spaces. Additional subjects range from conics and quadrics to homogeneous coordinates and projective geom

  20. Noncommutative geometry

    CERN Document Server

    Connes, Alain

    1994-01-01

    This English version of the path-breaking French book on this subject gives the definitive treatment of the revolutionary approach to measure theory, geometry, and mathematical physics developed by Alain Connes. Profusely illustrated and invitingly written, this book is ideal for anyone who wants to know what noncommutative geometry is, what it can do, or how it can be used in various areas of mathematics, quantization, and elementary particles and fields.Key Features* First full treatment of the subject and its applications* Written by the pioneer of this field* Broad applications in mathemat

  1. Reproducibility of ultrasonic testing

    International Nuclear Information System (INIS)

    Lecomte, J.-C.; Thomas, Andre; Launay, J.-P.; Martin, Pierre

    The reproducibility of amplitude quotations for both artificial and natural reflectors was studied for several combinations of instrument/search unit, all being of the same type. This study shows that in industrial inspection if a range of standardized equipment is used, a margin of error of about 6 decibels has to be taken into account (confidence interval of 95%). This margin is about 4 to 5 dB for natural or artificial defects located in the central area and about 6 to 7 dB for artificial defects located on the back surface. This lack of reproducibility seems to be attributable first to the search unit and then to the instrument and operator. These results were confirmed by analysis of calibration data obtained from 250 tests performed by 25 operators under shop conditions. The margin of error was higher than the 6 dB obtained in the study [fr

  2. Projective Geometry

    Indian Academy of Sciences (India)

    mathematicians are trained to use very precise language, and so find it hard to simplify and state .... thing. If you take a plane on which there are two such triangles which enjoy the above ... within this geometry to simplify things if needed.

  3. Geometry -----------~--------------RESONANCE

    Indian Academy of Sciences (India)

    Parallel: A pair of lines in a plane is said to be parallel if they do not meet. Mathematicians were at war ... Subsequently, Poincare, Klein, Beltrami and others refined non-. Euclidean geometry. ... plane divides the plane into two half planes and.

  4. Spectral dimension of quantum geometries

    International Nuclear Information System (INIS)

    Calcagni, Gianluca; Oriti, Daniele; Thürigen, Johannes

    2014-01-01

    The spectral dimension is an indicator of geometry and topology of spacetime and a tool to compare the description of quantum geometry in various approaches to quantum gravity. This is possible because it can be defined not only on smooth geometries but also on discrete (e.g., simplicial) ones. In this paper, we consider the spectral dimension of quantum states of spatial geometry defined on combinatorial complexes endowed with additional algebraic data: the kinematical quantum states of loop quantum gravity (LQG). Preliminarily, the effects of topology and discreteness of classical discrete geometries are studied in a systematic manner. We look for states reproducing the spectral dimension of a classical space in the appropriate regime. We also test the hypothesis that in LQG, as in other approaches, there is a scale dependence of the spectral dimension, which runs from the topological dimension at large scales to a smaller one at short distances. While our results do not give any strong support to this hypothesis, we can however pinpoint when the topological dimension is reproduced by LQG quantum states. Overall, by exploring the interplay of combinatorial, topological and geometrical effects, and by considering various kinds of quantum states such as coherent states and their superpositions, we find that the spectral dimension of discrete quantum geometries is more sensitive to the underlying combinatorial structures than to the details of the additional data associated with them. (paper)

  5. Riemannian geometry

    CERN Document Server

    Petersen, Peter

    2016-01-01

    Intended for a one year course, this text serves as a single source, introducing readers to the important techniques and theorems, while also containing enough background on advanced topics to appeal to those students wishing to specialize in Riemannian geometry. This is one of the few Works to combine both the geometric parts of Riemannian geometry and the analytic aspects of the theory. The book will appeal to a readership that have a basic knowledge of standard manifold theory, including tensors, forms, and Lie groups. Important revisions to the third edition include: a substantial addition of unique and enriching exercises scattered throughout the text; inclusion of an increased number of coordinate calculations of connection and curvature; addition of general formulas for curvature on Lie Groups and submersions; integration of variational calculus into the text allowing for an early treatment of the Sphere theorem using a proof by Berger; incorporation of several recent results about manifolds with posit...

  6. Special geometry

    International Nuclear Information System (INIS)

    Strominger, A.

    1990-01-01

    A special manifold is an allowed target manifold for the vector multiplets of D=4, N=2 supergravity. These manifolds are of interest for string theory because the moduli spaces of Calabi-Yau threefolds and c=9, (2,2) conformal field theories are special. Previous work has given a local, coordinate-dependent characterization of special geometry. A global description of special geometries is given herein, and their properties are studied. A special manifold M of complex dimension n is characterized by the existence of a holomorphic Sp(2n+2,R)xGL(1,C) vector bundle over M with a nowhere-vanishing holomorphic section Ω. The Kaehler potential on M is the logarithm of the Sp(2n+2,R) invariant norm of Ω. (orig.)

  7. Magnet stability and reproducibility

    CERN Document Server

    Marks, N

    2010-01-01

    Magnet stability and reproducibility have become increasingly important as greater precision and beams with smaller dimension are required for research, medical and other purpose. The observed causes of mechanical and electrical instability are introduced and the engineering arrangements needed to minimize these problems discussed; the resulting performance of a state-of-the-art synchrotron source (Diamond) is then presented. The need for orbit feedback to obtain best possible beam stability is briefly introduced, but omitting any details of the necessary technical equipment, which is outside the scope of the presentation.

  8. Reproducible research in palaeomagnetism

    Science.gov (United States)

    Lurcock, Pontus; Florindo, Fabio

    2015-04-01

    The reproducibility of research findings is attracting increasing attention across all scientific disciplines. In palaeomagnetism as elsewhere, computer-based analysis techniques are becoming more commonplace, complex, and diverse. Analyses can often be difficult to reproduce from scratch, both for the original researchers and for others seeking to build on the work. We present a palaeomagnetic plotting and analysis program designed to make reproducibility easier. Part of the problem is the divide between interactive and scripted (batch) analysis programs. An interactive desktop program with a graphical interface is a powerful tool for exploring data and iteratively refining analyses, but usually cannot operate without human interaction. This makes it impossible to re-run an analysis automatically, or to integrate it into a larger automated scientific workflow - for example, a script to generate figures and tables for a paper. In some cases the parameters of the analysis process itself are not saved explicitly, making it hard to repeat or improve the analysis even with human interaction. Conversely, non-interactive batch tools can be controlled by pre-written scripts and configuration files, allowing an analysis to be 'replayed' automatically from the raw data. However, this advantage comes at the expense of exploratory capability: iteratively improving an analysis entails a time-consuming cycle of editing scripts, running them, and viewing the output. Batch tools also tend to require more computer expertise from their users. PuffinPlot is a palaeomagnetic plotting and analysis program which aims to bridge this gap. First released in 2012, it offers both an interactive, user-friendly desktop interface and a batch scripting interface, both making use of the same core library of palaeomagnetic functions. We present new improvements to the program that help to integrate the interactive and batch approaches, allowing an analysis to be interactively explored and refined

  9. General Geometry and Geometry of Electromagnetism

    OpenAIRE

    Shahverdiyev, Shervgi S.

    2002-01-01

    It is shown that Electromagnetism creates geometry different from Riemannian geometry. General geometry including Riemannian geometry as a special case is constructed. It is proven that the most simplest special case of General Geometry is geometry underlying Electromagnetism. Action for electromagnetic field and Maxwell equations are derived from curvature function of geometry underlying Electromagnetism. And it is shown that equation of motion for a particle interacting with electromagnetic...

  10. Differential geometry

    CERN Document Server

    Ciarlet, Philippe G

    2007-01-01

    This book gives the basic notions of differential geometry, such as the metric tensor, the Riemann curvature tensor, the fundamental forms of a surface, covariant derivatives, and the fundamental theorem of surface theory in a selfcontained and accessible manner. Although the field is often considered a classical one, it has recently been rejuvenated, thanks to the manifold applications where it plays an essential role. The book presents some important applications to shells, such as the theory of linearly and nonlinearly elastic shells, the implementation of numerical methods for shells, and

  11. Finite quantum physics and noncommutative geometry

    International Nuclear Information System (INIS)

    Balachandran, A.P.; Ercolessi, E.; Landi, G.; Teotonio-Sobrinho, P.; Lizzi, F.; Sparano, G.

    1994-04-01

    Conventional discrete approximations of a manifold do not preserve its nontrivial topological features. In this article we describe an approximation scheme due to Sorkin which reproduces physically important aspects of manifold topology with striking fidelity. The approximating topological spaces in this scheme are partially ordered sets (posets). Now, in ordinary quantum physics on a manifold M, continuous probability densities generate the commutative C * -algebra C(M) of continuous functions on M. It has a fundamental physical significance, containing the information to reconstruct the topology of M, and serving to specify the domains of observables like the Hamiltonian. For a poset, the role of this algebra is assumed by a noncommutative C * -algebra A. As noncommutative geometries are based on noncommutative C * -algebra, we therefore have a remarkable connection between finite approximations to quantum physics and noncommutative geometries. Varies methods for doing quantum physics using A are explored. Particular attention is paid to developing numerically viable approximation schemes which at the same time preserve important topological features of continuum physics. (author). 21 refs, 13 figs

  12. Enacting the International/Reproducing Eurocentrism

    Directory of Open Access Journals (Sweden)

    Zeynep Gülşah Çapan

    Full Text Available Abstract This article focuses on the way in which Eurocentric conceptualisations of the ‘international’ are reproduced in different geopolitical contexts. Even though the Eurocentrism of International Relations has received growing attention, it has predominantly been concerned with unearthing the Eurocentrism of the ‘centre’, overlooking its varied manifestations in other geopolitical contexts. The article seeks to contribute to discussions about Eurocentrism by examining how different conceptualisations of the international are at work at a particular moment, and how these conceptualisations continue to reproduce Eurocentrism. It will focus on the way in which Eurocentric designations of spatial and temporal hierarchies were reproduced in the context of Turkey through a reading of how the ‘Gezi Park protests’ of 2013 and ‘Turkey’ itself were written into the story of the international.

  13. Geometry from Gauge Theory

    International Nuclear Information System (INIS)

    Correa, Diego H.; Silva, Guillermo A.

    2008-01-01

    We discuss how geometrical and topological aspects of certain (1/2)-BPS type IIB geometries are captured by their dual operators in N = 4 Super Yang-Mills theory. The type IIB solutions are characterized by arbitrary droplet pictures in a plane and we consider, in particular, axially symmetric droplets. The 1-loop anomalous dimension of the dual gauge theory operators probed with single traces is described by some bosonic lattice Hamiltonians. These Hamiltonians are shown to encode the topology of the droplets. In appropriate BMN limits, the Hamiltonians spectrum reproduces the spectrum of near-BPS string excitations propagating along each of the individual edges of the droplet. We also study semiclassical regimes for the Hamiltonians. For droplets having disconnected constituents, the Hamiltonian admits different complimentary semiclassical descriptions, each one replicating the semiclassical description for closed strings extending in each of the constituents

  14. Reproducibility in a multiprocessor system

    Science.gov (United States)

    Bellofatto, Ralph A; Chen, Dong; Coteus, Paul W; Eisley, Noel A; Gara, Alan; Gooding, Thomas M; Haring, Rudolf A; Heidelberger, Philip; Kopcsay, Gerard V; Liebsch, Thomas A; Ohmacht, Martin; Reed, Don D; Senger, Robert M; Steinmacher-Burow, Burkhard; Sugawara, Yutaka

    2013-11-26

    Fixing a problem is usually greatly aided if the problem is reproducible. To ensure reproducibility of a multiprocessor system, the following aspects are proposed; a deterministic system start state, a single system clock, phase alignment of clocks in the system, system-wide synchronization events, reproducible execution of system components, deterministic chip interfaces, zero-impact communication with the system, precise stop of the system and a scan of the system state.

  15. Contextual sensitivity in scientific reproducibility.

    Science.gov (United States)

    Van Bavel, Jay J; Mende-Siedlecki, Peter; Brady, William J; Reinero, Diego A

    2016-06-07

    In recent years, scientists have paid increasing attention to reproducibility. For example, the Reproducibility Project, a large-scale replication attempt of 100 studies published in top psychology journals found that only 39% could be unambiguously reproduced. There is a growing consensus among scientists that the lack of reproducibility in psychology and other fields stems from various methodological factors, including low statistical power, researcher's degrees of freedom, and an emphasis on publishing surprising positive results. However, there is a contentious debate about the extent to which failures to reproduce certain results might also reflect contextual differences (often termed "hidden moderators") between the original research and the replication attempt. Although psychologists have found extensive evidence that contextual factors alter behavior, some have argued that context is unlikely to influence the results of direct replications precisely because these studies use the same methods as those used in the original research. To help resolve this debate, we recoded the 100 original studies from the Reproducibility Project on the extent to which the research topic of each study was contextually sensitive. Results suggested that the contextual sensitivity of the research topic was associated with replication success, even after statistically adjusting for several methodological characteristics (e.g., statistical power, effect size). The association between contextual sensitivity and replication success did not differ across psychological subdisciplines. These results suggest that researchers, replicators, and consumers should be mindful of contextual factors that might influence a psychological process. We offer several guidelines for dealing with contextual sensitivity in reproducibility.

  16. Complex analysis and geometry

    CERN Document Server

    Silva, Alessandro

    1993-01-01

    The papers in this wide-ranging collection report on the results of investigations from a number of linked disciplines, including complex algebraic geometry, complex analytic geometry of manifolds and spaces, and complex differential geometry.

  17. Non-Riemannian geometry

    CERN Document Server

    Eisenhart, Luther Pfahler

    2005-01-01

    This concise text by a prominent mathematician deals chiefly with manifolds dominated by the geometry of paths. Topics include asymmetric and symmetric connections, the projective geometry of paths, and the geometry of sub-spaces. 1927 edition.

  18. Geometry of the Universe

    International Nuclear Information System (INIS)

    Gurevich, L.Eh.; Gliner, Eh.B.

    1978-01-01

    Problems of investigating the Universe space-time geometry are described on a popular level. Immediate space-time geometries, corresponding to three cosmologic models are considered. Space-time geometry of a closed model is the spherical Riemann geonetry, of an open model - is the Lobachevskij geometry; and of a plane model - is the Euclidean geometry. The Universe real geometry in the contemporary epoch of development is based on the data testifying to the fact that the Universe is infinitely expanding

  19. Reproducibility of scoring emphysema by HRCT

    International Nuclear Information System (INIS)

    Malinen, A.; Partanen, K.; Rytkoenen, H.; Vanninen, R.; Erkinjuntti-Pekkanen, R.

    2002-01-01

    Purpose: We evaluated the reproducibility of three visual scoring methods of emphysema and compared these methods with pulmonary function tests (VC, DLCO, FEV1 and FEV%) among farmer's lung patients and farmers. Material and Methods: Three radiologists examined high-resolution CT images of farmer's lung patients and their matched controls (n=70) for chronic interstitial lung diseases. Intraobserver reproducibility and interobserver variability were assessed for three methods: severity, Sanders' (extent) and Sakai. Pulmonary function tests as spirometry and diffusing capacity were measured. Results: Intraobserver -values for all three methods were good (0.51-0.74). Interobserver varied from 0.35 to 0.72. The Sanders' and the severity methods correlated strongly with pulmonary function tests, especially DLCO and FEV1. Conclusion: The Sanders' method proved to be reliable in evaluating emphysema, in terms of good consistency of interpretation and good correlation with pulmonary function tests

  20. Reproducibility of scoring emphysema by HRCT

    Energy Technology Data Exchange (ETDEWEB)

    Malinen, A.; Partanen, K.; Rytkoenen, H.; Vanninen, R. [Kuopio Univ. Hospital (Finland). Dept. of Clinical Radiology; Erkinjuntti-Pekkanen, R. [Kuopio Univ. Hospital (Finland). Dept. of Pulmonary Diseases

    2002-04-01

    Purpose: We evaluated the reproducibility of three visual scoring methods of emphysema and compared these methods with pulmonary function tests (VC, DLCO, FEV1 and FEV%) among farmer's lung patients and farmers. Material and Methods: Three radiologists examined high-resolution CT images of farmer's lung patients and their matched controls (n=70) for chronic interstitial lung diseases. Intraobserver reproducibility and interobserver variability were assessed for three methods: severity, Sanders' (extent) and Sakai. Pulmonary function tests as spirometry and diffusing capacity were measured. Results: Intraobserver -values for all three methods were good (0.51-0.74). Interobserver varied from 0.35 to 0.72. The Sanders' and the severity methods correlated strongly with pulmonary function tests, especially DLCO and FEV1. Conclusion: The Sanders' method proved to be reliable in evaluating emphysema, in terms of good consistency of interpretation and good correlation with pulmonary function tests.

  1. Machine learning spatial geometry from entanglement features

    Science.gov (United States)

    You, Yi-Zhuang; Yang, Zhao; Qi, Xiao-Liang

    2018-02-01

    Motivated by the close relations of the renormalization group with both the holography duality and the deep learning, we propose that the holographic geometry can emerge from deep learning the entanglement feature of a quantum many-body state. We develop a concrete algorithm, call the entanglement feature learning (EFL), based on the random tensor network (RTN) model for the tensor network holography. We show that each RTN can be mapped to a Boltzmann machine, trained by the entanglement entropies over all subregions of a given quantum many-body state. The goal is to construct the optimal RTN that best reproduce the entanglement feature. The RTN geometry can then be interpreted as the emergent holographic geometry. We demonstrate the EFL algorithm on a 1D free fermion system and observe the emergence of the hyperbolic geometry (AdS3 spatial geometry) as we tune the fermion system towards the gapless critical point (CFT2 point).

  2. Prediction of protein loop geometries in solution

    NARCIS (Netherlands)

    Rapp, Chaya S.; Strauss, Temima; Nederveen, Aart; Fuentes, Gloria

    2007-01-01

    The ability to determine the structure of a protein in solution is a critical tool for structural biology, as proteins in their native state are found in aqueous environments. Using a physical chemistry based prediction protocol, we demonstrate the ability to reproduce protein loop geometries in

  3. Worldsheet geometries of ambitwistor string

    Energy Technology Data Exchange (ETDEWEB)

    Ohmori, Kantaro [Department of Physics, the University of Tokyo,Hongo, Bunkyo-ku, Tokyo 133-0022 (Japan)

    2015-06-12

    Mason and Skinner proposed the ambitwistor string theory which directly reproduces the formulas for the amplitudes of massless particles proposed by Cachazo, He and Yuan. In this paper we discuss geometries of the moduli space of worldsheets associated to the bosonic or the RNS ambitwistor string. Further, we investigate the factorization properties of the amplitudes when an internal momentum is near on-shell in the abstract CFT language. Along the way, we propose the existence of the ambitwistor strings with three or four fermionic worldsheet currents.

  4. Granular flows in constrained geometries

    Science.gov (United States)

    Murthy, Tejas; Viswanathan, Koushik

    Confined geometries are widespread in granular processing applications. The deformation and flow fields in such a geometry, with non-trivial boundary conditions, determine the resultant mechanical properties of the material (local porosity, density, residual stresses etc.). We present experimental studies of deformation and plastic flow of a prototypical granular medium in different nontrivial geometries- flat-punch compression, Couette-shear flow and a rigid body sliding past a granular half-space. These geometries represent simplified scaled-down versions of common industrial configurations such as compaction and dredging. The corresponding granular flows show a rich variety of flow features, representing the entire gamut of material types, from elastic solids (beam buckling) to fluids (vortex-formation, boundary layers) and even plastically deforming metals (dead material zone, pile-up). The effect of changing particle-level properties (e.g., shape, size, density) on the observed flows is also explicitly demonstrated. Non-smooth contact dynamics particle simulations are shown to reproduce some of the observed flow features quantitatively. These results showcase some central challenges facing continuum-scale constitutive theories for dynamic granular flows.

  5. Contextual sensitivity in scientific reproducibility

    Science.gov (United States)

    Van Bavel, Jay J.; Mende-Siedlecki, Peter; Brady, William J.; Reinero, Diego A.

    2016-01-01

    In recent years, scientists have paid increasing attention to reproducibility. For example, the Reproducibility Project, a large-scale replication attempt of 100 studies published in top psychology journals found that only 39% could be unambiguously reproduced. There is a growing consensus among scientists that the lack of reproducibility in psychology and other fields stems from various methodological factors, including low statistical power, researcher’s degrees of freedom, and an emphasis on publishing surprising positive results. However, there is a contentious debate about the extent to which failures to reproduce certain results might also reflect contextual differences (often termed “hidden moderators”) between the original research and the replication attempt. Although psychologists have found extensive evidence that contextual factors alter behavior, some have argued that context is unlikely to influence the results of direct replications precisely because these studies use the same methods as those used in the original research. To help resolve this debate, we recoded the 100 original studies from the Reproducibility Project on the extent to which the research topic of each study was contextually sensitive. Results suggested that the contextual sensitivity of the research topic was associated with replication success, even after statistically adjusting for several methodological characteristics (e.g., statistical power, effect size). The association between contextual sensitivity and replication success did not differ across psychological subdisciplines. These results suggest that researchers, replicators, and consumers should be mindful of contextual factors that might influence a psychological process. We offer several guidelines for dealing with contextual sensitivity in reproducibility. PMID:27217556

  6. Reproducibility of 201Tl myocardial imaging

    International Nuclear Information System (INIS)

    McLaughlin, P.R.; Martin, R.P.; Doherty, P.; Daspit, S.; Goris, M.; Haskell, W.; Lewis, S.; Kriss, J.P.; Harrison, D.C.

    1977-01-01

    Seventy-six thallium-201 myocardial perfusion studies were performed on twenty-five patients to assess their reproducibility and the effect of varying the level of exercise on the results of imaging. Each patient had a thallium-201 study at rest. Fourteen patients had studies on two occasions at maximum exercise, and twelve patients had studies both at light and at maximum exercise. Of 70 segments in the 14 patients assessed on each of two maximum exercise tests, 64 (91 percent) were reproducible. Only 53 percent (16/30) of the ischemic defects present at maximum exercise were seen in the light exercise study in the 12 patients assessed at two levels of exercise. Correlation of perfusion defects with arteriographically proven significant coronary stenosis was good for the left anterior descending and right coronary arteries, but not as good for circumflex artery disease. Thallium-201 myocardial imaging at maximum exercise is reproducible within acceptable limits, but careful attention to exercise technique is essential for valid comparative studies

  7. Reproducible Bioinformatics Research for Biologists

    Science.gov (United States)

    This book chapter describes the current Big Data problem in Bioinformatics and the resulting issues with performing reproducible computational research. The core of the chapter provides guidelines and summaries of current tools/techniques that a noncomputational researcher would need to learn to pe...

  8. Reproducibility of brain ADC histograms

    International Nuclear Information System (INIS)

    Steens, S.C.A.; Buchem, M.A. van; Admiraal-Behloul, F.; Schaap, J.A.; Hoogenraad, F.G.C.; Wheeler-Kingshott, C.A.M.; Tofts, P.S.; Cessie, S. le

    2004-01-01

    The aim of this study was to assess the effect of differences in acquisition technique on whole-brain apparent diffusion coefficient (ADC) histogram parameters, as well as to assess scan-rescan reproducibility. Diffusion-weighted imaging (DWI) was performed in 7 healthy subjects with b-values 0-800, 0-1000, and 0-1500 s/mm 2 and fluid-attenuated inversion recovery (FLAIR) DWI with b-values 0-1000 s/mm 2 . All sequences were repeated with and without repositioning. The peak location, peak height, and mean ADC of the ADC histograms and mean ADC of a region of interest (ROI) in the white matter were compared using paired-sample t tests. Scan-rescan reproducibility was assessed using paired-sample t tests, and repeatability coefficients were reported. With increasing maximum b-values, ADC histograms shifted to lower values, with an increase in peak height (p<0.01). With FLAIR DWI, the ADC histogram shifted to lower values with a significantly higher, narrower peak (p<0.01), although the ROI mean ADC showed no significant differences. For scan-rescan reproducibility, no significant differences were observed. Different DWI pulse sequences give rise to different ADC histograms. With a given pulse sequence, however, ADC histogram analysis is a robust and reproducible technique. Using FLAIR DWI, the partial-voluming effect of cerebrospinal fluid, and thus its confounding effect on histogram analyses, can be reduced

  9. Geometry and its applications

    CERN Document Server

    Meyer, Walter J

    2006-01-01

    Meyer''s Geometry and Its Applications, Second Edition, combines traditional geometry with current ideas to present a modern approach that is grounded in real-world applications. It balances the deductive approach with discovery learning, and introduces axiomatic, Euclidean geometry, non-Euclidean geometry, and transformational geometry. The text integrates applications and examples throughout and includes historical notes in many chapters. The Second Edition of Geometry and Its Applications is a significant text for any college or university that focuses on geometry''s usefulness in other disciplines. It is especially appropriate for engineering and science majors, as well as future mathematics teachers.* Realistic applications integrated throughout the text, including (but not limited to): - Symmetries of artistic patterns- Physics- Robotics- Computer vision- Computer graphics- Stability of architectural structures- Molecular biology- Medicine- Pattern recognition* Historical notes included in many chapters...

  10. Algebraic geometry in India

    Indian Academy of Sciences (India)

    algebraic geometry but also in related fields like number theory. ... every vector bundle on the affine space is trivial. (equivalently ... les on a compact Riemann surface to unitary rep- ... tial geometry and topology and was generalised in.

  11. Spinorial Geometry and Branes

    International Nuclear Information System (INIS)

    Sloane, Peter

    2007-01-01

    We adapt the spinorial geometry method introduced in [J. Gillard, U. Gran and G. Papadopoulos, 'The spinorial geometry of supersymmetric backgrounds,' Class. Quant. Grav. 22 (2005) 1033 [ (arXiv:hep-th/0410155)

  12. Spinorial Geometry and Branes

    Energy Technology Data Exchange (ETDEWEB)

    Sloane, Peter [Department of Mathematics, King' s College, University of London, Strand, London WC2R 2LS (United Kingdom)

    2007-09-15

    We adapt the spinorial geometry method introduced in [J. Gillard, U. Gran and G. Papadopoulos, 'The spinorial geometry of supersymmetric backgrounds,' Class. Quant. Grav. 22 (2005) 1033 [ (arXiv:hep-th/0410155)

  13. Towards Reproducibility in Computational Hydrology

    Science.gov (United States)

    Hutton, Christopher; Wagener, Thorsten; Freer, Jim; Han, Dawei; Duffy, Chris; Arheimer, Berit

    2017-04-01

    Reproducibility is a foundational principle in scientific research. The ability to independently re-run an experiment helps to verify the legitimacy of individual findings, and evolve (or reject) hypotheses and models of how environmental systems function, and move them from specific circumstances to more general theory. Yet in computational hydrology (and in environmental science more widely) the code and data that produces published results are not regularly made available, and even if they are made available, there remains a multitude of generally unreported choices that an individual scientist may have made that impact the study result. This situation strongly inhibits the ability of our community to reproduce and verify previous findings, as all the information and boundary conditions required to set up a computational experiment simply cannot be reported in an article's text alone. In Hutton et al 2016 [1], we argue that a cultural change is required in the computational hydrological community, in order to advance and make more robust the process of knowledge creation and hypothesis testing. We need to adopt common standards and infrastructures to: (1) make code readable and re-useable; (2) create well-documented workflows that combine re-useable code together with data to enable published scientific findings to be reproduced; (3) make code and workflows available, easy to find, and easy to interpret, using code and code metadata repositories. To create change we argue for improved graduate training in these areas. In this talk we reflect on our progress in achieving reproducible, open science in computational hydrology, which are relevant to the broader computational geoscience community. In particular, we draw on our experience in the Switch-On (EU funded) virtual water science laboratory (http://www.switch-on-vwsl.eu/participate/), which is an open platform for collaboration in hydrological experiments (e.g. [2]). While we use computational hydrology as

  14. Geometry essentials for dummies

    CERN Document Server

    Ryan, Mark

    2011-01-01

    Just the critical concepts you need to score high in geometry This practical, friendly guide focuses on critical concepts taught in a typical geometry course, from the properties of triangles, parallelograms, circles, and cylinders, to the skills and strategies you need to write geometry proofs. Geometry Essentials For Dummies is perfect for cramming or doing homework, or as a reference for parents helping kids study for exams. Get down to the basics - get a handle on the basics of geometry, from lines, segments, and angles, to vertices, altitudes, and diagonals Conque

  15. Reproducibility of (n,γ) gamma ray spectrum in Pb under different ENDF/B releases

    Energy Technology Data Exchange (ETDEWEB)

    Kebwaro, J.M., E-mail: jeremiahkebwaro@gmail.com [Department of Physical Sciences, Karatina University, P.O. Box 1957-10101, Karatina (Kenya); He, C.H.; Zhao, Y.L. [School of Nuclear Science and Technology, Xian Jiaotong University, Xian, Shaanxi 710049 (China)

    2016-04-15

    Radiative capture reactions are of interest in shielding design and other fundamental research. In this study the reproducibility of (n,γ) reactions in Pb when cross-section data from different ENDF/B releases are used in the Monte-Carlo code, MCNP, was investigated. Pb was selected for this study because it is widely used in shielding applications where capture reactions are likely to occur. Four different neutron spectra were declared as source in the MCNP model which consisted of a simple spherical geometry. The gamma ray spectra due to the capture reactions were recorded at 10 cm from the center of the sphere. The results reveal that the gamma ray spectrum produced by ENDF/B-V is in reasonable agreement with that produced when ENDF/B-VI.6 is used. However the spectrum produced by ENDF/B-VII does not reveal any primary gamma rays in the higher energy region (E > 3 MeV). It is further observed that the intensities of the capture gamma rays produced when various releases are used differ by a some margin showing that the results are not reproducible. The generated spectra also vary with the spectrum of the source neutrons. The discrepancies observed among various ENDF/B releases could raise concerns to end users and need to be addressed properly during benchmarking calculations before the next release. The evaluation from ENDF to ACE format that is supplied with MCNP should also be examined because errors might have arisen during the evaluation.

  16. Arithmetic noncommutative geometry

    CERN Document Server

    Marcolli, Matilde

    2005-01-01

    Arithmetic noncommutative geometry denotes the use of ideas and tools from the field of noncommutative geometry, to address questions and reinterpret in a new perspective results and constructions from number theory and arithmetic algebraic geometry. This general philosophy is applied to the geometry and arithmetic of modular curves and to the fibers at archimedean places of arithmetic surfaces and varieties. The main reason why noncommutative geometry can be expected to say something about topics of arithmetic interest lies in the fact that it provides the right framework in which the tools of geometry continue to make sense on spaces that are very singular and apparently very far from the world of algebraic varieties. This provides a way of refining the boundary structure of certain classes of spaces that arise in the context of arithmetic geometry, such as moduli spaces (of which modular curves are the simplest case) or arithmetic varieties (completed by suitable "fibers at infinity"), by adding boundaries...

  17. Effect of Initial Conditions on Reproducibility of Scientific Research

    Science.gov (United States)

    Djulbegovic, Benjamin; Hozo, Iztok

    2014-01-01

    Background: It is estimated that about half of currently published research cannot be reproduced. Many reasons have been offered as explanations for failure to reproduce scientific research findings- from fraud to the issues related to design, conduct, analysis, or publishing scientific research. We also postulate a sensitive dependency on initial conditions by which small changes can result in the large differences in the research findings when attempted to be reproduced at later times. Methods: We employed a simple logistic regression equation to model the effect of covariates on the initial study findings. We then fed the input from the logistic equation into a logistic map function to model stability of the results in repeated experiments over time. We illustrate the approach by modeling effects of different factors on the choice of correct treatment. Results: We found that reproducibility of the study findings depended both on the initial values of all independent variables and the rate of change in the baseline conditions, the latter being more important. When the changes in the baseline conditions vary by about 3.5 to about 4 in between experiments, no research findings could be reproduced. However, when the rate of change between the experiments is ≤2.5 the results become highly predictable between the experiments. Conclusions: Many results cannot be reproduced because of the changes in the initial conditions between the experiments. Better control of the baseline conditions in-between the experiments may help improve reproducibility of scientific findings. PMID:25132705

  18. Reproducibility of isotope ratio measurements

    International Nuclear Information System (INIS)

    Elmore, D.

    1981-01-01

    The use of an accelerator as part of a mass spectrometer has improved the sensitivity for measuring low levels of long-lived radionuclides by several orders of magnitude. However, the complexity of a large tandem accelerator and beam transport system has made it difficult to match the precision of low energy mass spectrometry. Although uncertainties for accelerator measured isotope ratios as low as 1% have been obtained under favorable conditions, most errors quoted in the literature for natural samples are in the 5 to 20% range. These errors are dominated by statistics and generally the reproducibility is unknown since the samples are only measured once

  19. Evaluation of multichannel reproduced sound

    DEFF Research Database (Denmark)

    Choisel, Sylvain; Wickelmaier, Florian Maria

    2007-01-01

    A study was conducted with the goal of quantifying auditory attributes which underlie listener preference for multichannel reproduced sound. Short musical excerpts were presented in mono, stereo and several multichannel formats to a panel of forty selected listeners. Scaling of auditory attributes......, as well as overall preference, was based on consistency tests of binary paired-comparison judgments and on modeling the choice frequencies using probabilistic choice models. As a result, the preferences of non-expert listeners could be measured reliably at a ratio scale level. Principal components derived...

  20. Fractal geometry and computer graphics

    CERN Document Server

    Sakas, Georgios; Peitgen, Heinz-Otto; Englert, Gabriele

    1992-01-01

    Fractal geometry has become popular in the last 15 years, its applications can be found in technology, science, or even arts. Fractal methods and formalism are seen today as a general, abstract, but nevertheless practical instrument for the description of nature in a wide sense. But it was Computer Graphics which made possible the increasing popularity of fractals several years ago, and long after their mathematical formulation. The two disciplines are tightly linked. The book contains the scientificcontributions presented in an international workshop in the "Computer Graphics Center" in Darmstadt, Germany. The target of the workshop was to present the wide spectrum of interrelationships and interactions between Fractal Geometry and Computer Graphics. The topics vary from fundamentals and new theoretical results to various applications and systems development. All contributions are original, unpublished papers.The presentations have been discussed in two working groups; the discussion results, together with a...

  1. The Geometry Conference

    CERN Document Server

    Bárány, Imre; Vilcu, Costin

    2016-01-01

    This volume presents easy-to-understand yet surprising properties obtained using topological, geometric and graph theoretic tools in the areas covered by the Geometry Conference that took place in Mulhouse, France from September 7–11, 2014 in honour of Tudor Zamfirescu on the occasion of his 70th anniversary. The contributions address subjects in convexity and discrete geometry, in distance geometry or with geometrical flavor in combinatorics, graph theory or non-linear analysis. Written by top experts, these papers highlight the close connections between these fields, as well as ties to other domains of geometry and their reciprocal influence. They offer an overview on recent developments in geometry and its border with discrete mathematics, and provide answers to several open questions. The volume addresses a large audience in mathematics, including researchers and graduate students interested in geometry and geometrical problems.

  2. Algorithms in Algebraic Geometry

    CERN Document Server

    Dickenstein, Alicia; Sommese, Andrew J

    2008-01-01

    In the last decade, there has been a burgeoning of activity in the design and implementation of algorithms for algebraic geometric computation. Some of these algorithms were originally designed for abstract algebraic geometry, but now are of interest for use in applications and some of these algorithms were originally designed for applications, but now are of interest for use in abstract algebraic geometry. The workshop on Algorithms in Algebraic Geometry that was held in the framework of the IMA Annual Program Year in Applications of Algebraic Geometry by the Institute for Mathematics and Its

  3. Revolutions of Geometry

    CERN Document Server

    O'Leary, Michael

    2010-01-01

    Guides readers through the development of geometry and basic proof writing using a historical approach to the topic. In an effort to fully appreciate the logic and structure of geometric proofs, Revolutions of Geometry places proofs into the context of geometry's history, helping readers to understand that proof writing is crucial to the job of a mathematician. Written for students and educators of mathematics alike, the book guides readers through the rich history and influential works, from ancient times to the present, behind the development of geometry. As a result, readers are successfull

  4. Fundamental concepts of geometry

    CERN Document Server

    Meserve, Bruce E

    1983-01-01

    Demonstrates relationships between different types of geometry. Provides excellent overview of the foundations and historical evolution of geometrical concepts. Exercises (no solutions). Includes 98 illustrations.

  5. Developments in special geometry

    International Nuclear Information System (INIS)

    Mohaupt, Thomas; Vaughan, Owen

    2012-01-01

    We review the special geometry of N = 2 supersymmetric vector and hypermultiplets with emphasis on recent developments and applications. A new formulation of the local c-map based on the Hesse potential and special real coordinates is presented. Other recent developments include the Euclidean version of special geometry, and generalizations of special geometry to non-supersymmetric theories. As applications we discuss the proof that the local r-map and c-map preserve geodesic completeness, and the construction of four- and five-dimensional static solutions through dimensional reduction over time. The shared features of the real, complex and quaternionic version of special geometry are stressed throughout.

  6. Geometry of curves and surfaces with Maple

    CERN Document Server

    Rovenski, Vladimir

    2000-01-01

    This concise text on geometry with computer modeling presents some elementary methods for analytical modeling and visualization of curves and surfaces. The author systematically examines such powerful tools as 2-D and 3-D animation of geometric images, transformations, shadows, and colors, and then further studies more complex problems in differential geometry. Well-illustrated with more than 350 figures---reproducible using Maple programs in the book---the work is devoted to three main areas: curves, surfaces, and polyhedra. Pedagogical benefits can be found in the large number of Maple programs, some of which are analogous to C++ programs, including those for splines and fractals. To avoid tedious typing, readers will be able to download many of the programs from the Birkhauser web site. Aimed at a broad audience of students, instructors of mathematics, computer scientists, and engineers who have knowledge of analytical geometry, i.e., method of coordinates, this text will be an excellent classroom resource...

  7. Geometry of multihadron production

    Energy Technology Data Exchange (ETDEWEB)

    Bjorken, J.D.

    1994-10-01

    This summary talk only reviews a small sample of topics featured at this symposium: Introduction; The Geometry and Geography of Phase space; Space-Time Geometry and HBT; Multiplicities, Intermittency, Correlations; Disoriented Chiral Condensate; Deep Inelastic Scattering at HERA; and Other Contributions.

  8. Designs and finite geometries

    CERN Document Server

    1996-01-01

    Designs and Finite Geometries brings together in one place important contributions and up-to-date research results in this important area of mathematics. Designs and Finite Geometries serves as an excellent reference, providing insight into some of the most important research issues in the field.

  9. Geometry of multihadron production

    International Nuclear Information System (INIS)

    Bjorken, J.D.

    1994-10-01

    This summary talk only reviews a small sample of topics featured at this symposium: Introduction; The Geometry and Geography of Phase space; Space-Time Geometry and HBT; Multiplicities, Intermittency, Correlations; Disoriented Chiral Condensate; Deep Inelastic Scattering at HERA; and Other Contributions

  10. The Beauty of Geometry

    Science.gov (United States)

    Morris, Barbara H.

    2004-01-01

    This article describes a geometry project that used the beauty of stained-glass-window designs to teach middle school students about geometric figures and concepts. Three honors prealgebra teachers and a middle school mathematics gifted intervention specialist created a geometry project that covered the curriculum and also assessed students'…

  11. A Lorentzian quantum geometry

    Energy Technology Data Exchange (ETDEWEB)

    Grotz, Andreas

    2011-10-07

    In this thesis, a formulation of a Lorentzian quantum geometry based on the framework of causal fermion systems is proposed. After giving the general definition of causal fermion systems, we deduce space-time as a topological space with an underlying causal structure. Restricting attention to systems of spin dimension two, we derive the objects of our quantum geometry: the spin space, the tangent space endowed with a Lorentzian metric, connection and curvature. In order to get the correspondence to classical differential geometry, we construct examples of causal fermion systems by regularizing Dirac sea configurations in Minkowski space and on a globally hyperbolic Lorentzian manifold. When removing the regularization, the objects of our quantum geometry reduce to the common objects of spin geometry on Lorentzian manifolds, up to higher order curvature corrections.

  12. Methods of information geometry

    CERN Document Server

    Amari, Shun-Ichi

    2000-01-01

    Information geometry provides the mathematical sciences with a new framework of analysis. It has emerged from the investigation of the natural differential geometric structure on manifolds of probability distributions, which consists of a Riemannian metric defined by the Fisher information and a one-parameter family of affine connections called the \\alpha-connections. The duality between the \\alpha-connection and the (-\\alpha)-connection together with the metric play an essential role in this geometry. This kind of duality, having emerged from manifolds of probability distributions, is ubiquitous, appearing in a variety of problems which might have no explicit relation to probability theory. Through the duality, it is possible to analyze various fundamental problems in a unified perspective. The first half of this book is devoted to a comprehensive introduction to the mathematical foundation of information geometry, including preliminaries from differential geometry, the geometry of manifolds or probability d...

  13. A Lorentzian quantum geometry

    International Nuclear Information System (INIS)

    Grotz, Andreas

    2011-01-01

    In this thesis, a formulation of a Lorentzian quantum geometry based on the framework of causal fermion systems is proposed. After giving the general definition of causal fermion systems, we deduce space-time as a topological space with an underlying causal structure. Restricting attention to systems of spin dimension two, we derive the objects of our quantum geometry: the spin space, the tangent space endowed with a Lorentzian metric, connection and curvature. In order to get the correspondence to classical differential geometry, we construct examples of causal fermion systems by regularizing Dirac sea configurations in Minkowski space and on a globally hyperbolic Lorentzian manifold. When removing the regularization, the objects of our quantum geometry reduce to the common objects of spin geometry on Lorentzian manifolds, up to higher order curvature corrections.

  14. Geometry on the space of geometries

    International Nuclear Information System (INIS)

    Christodoulakis, T.; Zanelli, J.

    1988-06-01

    We discuss the geometric structure of the configuration space of pure gravity. This is an infinite dimensional manifold, M, where each point represents one spatial geometry g ij (x). The metric on M is dictated by geometrodynamics, and from it, the Christoffel symbols and Riemann tensor can be found. A ''free geometry'' tracing a geodesic on the manifold describes the time evolution of space in the strong gravity limit. In a regularization previously introduced by the authors, it is found that M does not have the same dimensionality, D, everywhere, and that D is not a scalar, although it is covariantly constant. In this regularization, it is seen that the path integral measure can be absorbed in a renormalization of the cosmological constant. (author). 19 refs

  15. Reproducible research: a minority opinion

    Science.gov (United States)

    Drummond, Chris

    2018-01-01

    Reproducible research, a growing movement within many scientific fields, including machine learning, would require the code, used to generate the experimental results, be published along with any paper. Probably the most compelling argument for this is that it is simply following good scientific practice, established over the years by the greats of science. The implication is that failure to follow such a practice is unscientific, not a label any machine learning researchers would like to carry. It is further claimed that misconduct is causing a growing crisis of confidence in science. That, without this practice being enforced, science would inevitably fall into disrepute. This viewpoint is becoming ubiquitous but here I offer a differing opinion. I argue that far from being central to science, what is being promulgated is a narrow interpretation of how science works. I contend that the consequences are somewhat overstated. I would also contend that the effort necessary to meet the movement's aims, and the general attitude it engenders would not serve well any of the research disciplines, including our own.

  16. Complex and symplectic geometry

    CERN Document Server

    Medori, Costantino; Tomassini, Adriano

    2017-01-01

    This book arises from the INdAM Meeting "Complex and Symplectic Geometry", which was held in Cortona in June 2016. Several leading specialists, including young researchers, in the field of complex and symplectic geometry, present the state of the art of their research on topics such as the cohomology of complex manifolds; analytic techniques in Kähler and non-Kähler geometry; almost-complex and symplectic structures; special structures on complex manifolds; and deformations of complex objects. The work is intended for researchers in these areas.

  17. Non-Euclidean geometry

    CERN Document Server

    Kulczycki, Stefan

    2008-01-01

    This accessible approach features two varieties of proofs: stereometric and planimetric, as well as elementary proofs that employ only the simplest properties of the plane. A short history of geometry precedes a systematic exposition of the principles of non-Euclidean geometry.Starting with fundamental assumptions, the author examines the theorems of Hjelmslev, mapping a plane into a circle, the angle of parallelism and area of a polygon, regular polygons, straight lines and planes in space, and the horosphere. Further development of the theory covers hyperbolic functions, the geometry of suff

  18. Lectures on coarse geometry

    CERN Document Server

    Roe, John

    2003-01-01

    Coarse geometry is the study of spaces (particularly metric spaces) from a 'large scale' point of view, so that two spaces that look the same from a great distance are actually equivalent. This point of view is effective because it is often true that the relevant geometric properties of metric spaces are determined by their coarse geometry. Two examples of important uses of coarse geometry are Gromov's beautiful notion of a hyperbolic group and Mostow's proof of his famous rigidity theorem. The first few chapters of the book provide a general perspective on coarse structures. Even when only metric coarse structures are in view, the abstract framework brings the same simplification as does the passage from epsilons and deltas to open sets when speaking of continuity. The middle section reviews notions of negative curvature and rigidity. Modern interest in large scale geometry derives in large part from Mostow's rigidity theorem and from Gromov's subsequent 'large scale' rendition of the crucial properties of n...

  19. Lectures on Symplectic Geometry

    CERN Document Server

    Silva, Ana Cannas

    2001-01-01

    The goal of these notes is to provide a fast introduction to symplectic geometry for graduate students with some knowledge of differential geometry, de Rham theory and classical Lie groups. This text addresses symplectomorphisms, local forms, contact manifolds, compatible almost complex structures, Kaehler manifolds, hamiltonian mechanics, moment maps, symplectic reduction and symplectic toric manifolds. It contains guided problems, called homework, designed to complement the exposition or extend the reader's understanding. There are by now excellent references on symplectic geometry, a subset of which is in the bibliography of this book. However, the most efficient introduction to a subject is often a short elementary treatment, and these notes attempt to serve that purpose. This text provides a taste of areas of current research and will prepare the reader to explore recent papers and extensive books on symplectic geometry where the pace is much faster. For this reprint numerous corrections and cl...

  20. Complex algebraic geometry

    CERN Document Server

    Kollár, János

    1997-01-01

    This volume contains the lectures presented at the third Regional Geometry Institute at Park City in 1993. The lectures provide an introduction to the subject, complex algebraic geometry, making the book suitable as a text for second- and third-year graduate students. The book deals with topics in algebraic geometry where one can reach the level of current research while starting with the basics. Topics covered include the theory of surfaces from the viewpoint of recent higher-dimensional developments, providing an excellent introduction to more advanced topics such as the minimal model program. Also included is an introduction to Hodge theory and intersection homology based on the simple topological ideas of Lefschetz and an overview of the recent interactions between algebraic geometry and theoretical physics, which involve mirror symmetry and string theory.

  1. Geometry and Combinatorics

    DEFF Research Database (Denmark)

    Kokkendorff, Simon Lyngby

    2002-01-01

    The subject of this Ph.D.-thesis is somewhere in between continuous and discrete geometry. Chapter 2 treats the geometry of finite point sets in semi-Riemannian hyperquadrics,using a matrix whose entries are a trigonometric function of relative distances in a given point set. The distance...... to the geometry of a simplex in a semi-Riemannian hyperquadric. In chapter 3 we study which finite metric spaces that are realizable in a hyperbolic space in the limit where curvature goes to -∞. We show that such spaces are the so called leaf spaces, the set of degree 1 vertices of weighted trees. We also...... establish results on the limiting geometry of such an isometrically realized leaf space simplex in hyperbolic space, when curvature goes to -∞. Chapter 4 discusses negative type of metric spaces. We give a measure theoretic treatment of this concept and related invariants. The theory developed...

  2. The geometry of geodesics

    CERN Document Server

    Busemann, Herbert

    2005-01-01

    A comprehensive approach to qualitative problems in intrinsic differential geometry, this text examines Desarguesian spaces, perpendiculars and parallels, covering spaces, the influence of the sign of the curvature on geodesics, more. 1955 edition. Includes 66 figures.

  3. Geometry and billiards

    CERN Document Server

    Tabachnikov, Serge

    2005-01-01

    Mathematical billiards describe the motion of a mass point in a domain with elastic reflections off the boundary or, equivalently, the behavior of rays of light in a domain with ideally reflecting boundary. From the point of view of differential geometry, the billiard flow is the geodesic flow on a manifold with boundary. This book is devoted to billiards in their relation with differential geometry, classical mechanics, and geometrical optics. The topics covered include variational principles of billiard motion, symplectic geometry of rays of light and integral geometry, existence and nonexistence of caustics, optical properties of conics and quadrics and completely integrable billiards, periodic billiard trajectories, polygonal billiards, mechanisms of chaos in billiard dynamics, and the lesser-known subject of dual (or outer) billiards. The book is based on an advanced undergraduate topics course (but contains more material than can be realistically taught in one semester). Although the minimum prerequisit...

  4. Introduction to tropical geometry

    CERN Document Server

    Maclagan, Diane

    2015-01-01

    Tropical geometry is a combinatorial shadow of algebraic geometry, offering new polyhedral tools to compute invariants of algebraic varieties. It is based on tropical algebra, where the sum of two numbers is their minimum and the product is their sum. This turns polynomials into piecewise-linear functions, and their zero sets into polyhedral complexes. These tropical varieties retain a surprising amount of information about their classical counterparts. Tropical geometry is a young subject that has undergone a rapid development since the beginning of the 21st century. While establishing itself as an area in its own right, deep connections have been made to many branches of pure and applied mathematics. This book offers a self-contained introduction to tropical geometry, suitable as a course text for beginning graduate students. Proofs are provided for the main results, such as the Fundamental Theorem and the Structure Theorem. Numerous examples and explicit computations illustrate the main concepts. Each of t...

  5. Rudiments of algebraic geometry

    CERN Document Server

    Jenner, WE

    2017-01-01

    Aimed at advanced undergraduate students of mathematics, this concise text covers the basics of algebraic geometry. Topics include affine spaces, projective spaces, rational curves, algebraic sets with group structure, more. 1963 edition.

  6. Implosions and hypertoric geometry

    DEFF Research Database (Denmark)

    Dancer, A.; Kirwan, F.; Swann, A.

    2013-01-01

    The geometry of the universal hyperkahler implosion for SU (n) is explored. In particular, we show that the universal hyperkahler implosion naturally contains a hypertoric variety described in terms of quivers. Furthermore, we discuss a gauge theoretic approach to hyperkahler implosion.......The geometry of the universal hyperkahler implosion for SU (n) is explored. In particular, we show that the universal hyperkahler implosion naturally contains a hypertoric variety described in terms of quivers. Furthermore, we discuss a gauge theoretic approach to hyperkahler implosion....

  7. Intermediate algebra & analytic geometry

    CERN Document Server

    Gondin, William R

    1967-01-01

    Intermediate Algebra & Analytic Geometry Made Simple focuses on the principles, processes, calculations, and methodologies involved in intermediate algebra and analytic geometry. The publication first offers information on linear equations in two unknowns and variables, functions, and graphs. Discussions focus on graphic interpretations, explicit and implicit functions, first quadrant graphs, variables and functions, determinate and indeterminate systems, independent and dependent equations, and defective and redundant systems. The text then examines quadratic equations in one variable, system

  8. d-geometries revisited

    CERN Document Server

    Ceresole, Anna; Gnecchi, Alessandra; Marrani, Alessio

    2013-01-01

    We analyze some properties of the four dimensional supergravity theories which originate from five dimensions upon reduction. They generalize to N>2 extended supersymmetries the d-geometries with cubic prepotentials, familiar from N=2 special K\\"ahler geometry. We emphasize the role of a suitable parametrization of the scalar fields and the corresponding triangular symplectic basis. We also consider applications to the first order flow equations for non-BPS extremal black holes.

  9. CMS geometry through 2020

    International Nuclear Information System (INIS)

    Osborne, I; Brownson, E; Eulisse, G; Jones, C D; Sexton-Kennedy, E; Lange, D J

    2014-01-01

    CMS faces real challenges with upgrade of the CMS detector through 2020 and beyond. One of the challenges, from the software point of view, is managing upgrade simulations with the same software release as the 2013 scenario. We present the CMS geometry description software model, its integration with the CMS event setup and core software. The CMS geometry configuration and selection is implemented in Python. The tools collect the Python configuration fragments into a script used in CMS workflow. This flexible and automated geometry configuration allows choosing either transient or persistent version of the same scenario and specific version of the same scenario. We describe how the geometries are integrated and validated, and how we define and handle different geometry scenarios in simulation and reconstruction. We discuss how to transparently manage multiple incompatible geometries in the same software release. Several examples are shown based on current implementation assuring consistent choice of scenario conditions. The consequences and implications for multiple/different code algorithms are discussed.

  10. Software Geometry in Simulations

    Science.gov (United States)

    Alion, Tyler; Viren, Brett; Junk, Tom

    2015-04-01

    The Long Baseline Neutrino Experiment (LBNE) involves many detectors. The experiment's near detector (ND) facility, may ultimately involve several detectors. The far detector (FD) will be significantly larger than any other Liquid Argon (LAr) detector yet constructed; many prototype detectors are being constructed and studied to motivate a plethora of proposed FD designs. Whether it be a constructed prototype or a proposed ND/FD design, every design must be simulated and analyzed. This presents a considerable challenge to LBNE software experts; each detector geometry must be described to the simulation software in an efficient way which allows for multiple authors to easily collaborate. Furthermore, different geometry versions must be tracked throughout their use. We present a framework called General Geometry Description (GGD), written and developed by LBNE software collaborators for managing software to generate geometries. Though GGD is flexible enough to be used by any experiment working with detectors, we present it's first use in generating Geometry Description Markup Language (GDML) files to interface with LArSoft, a framework of detector simulations, event reconstruction, and data analyses written for all LAr technology users at Fermilab. Brett is the other of the framework discussed here, the General Geometry Description (GGD).

  11. Introduction to combinatorial geometry

    International Nuclear Information System (INIS)

    Gabriel, T.A.; Emmett, M.B.

    1985-01-01

    The combinatorial geometry package as used in many three-dimensional multimedia Monte Carlo radiation transport codes, such as HETC, MORSE, and EGS, is becoming the preferred way to describe simple and complicated systems. Just about any system can be modeled using the package with relatively few input statements. This can be contrasted against the older style geometry packages in which the required input statements could be large even for relatively simple systems. However, with advancements come some difficulties. The users of combinatorial geometry must be able to visualize more, and, in some instances, all of the system at a time. Errors can be introduced into the modeling which, though slight, and at times hard to detect, can have devastating effects on the calculated results. As with all modeling packages, the best way to learn the combinatorial geometry is to use it, first on a simple system then on more complicated systems. The basic technique for the description of the geometry consists of defining the location and shape of the various zones in terms of the intersections and unions of geometric bodies. The geometric bodies which are generally included in most combinatorial geometry packages are: (1) box, (2) right parallelepiped, (3) sphere, (4) right circular cylinder, (5) right elliptic cylinder, (6) ellipsoid, (7) truncated right cone, (8) right angle wedge, and (9) arbitrary polyhedron. The data necessary to describe each of these bodies are given. As can be easily noted, there are some subsets included for simplicity

  12. Global aspects of complex geometry

    CERN Document Server

    Catanese, Fabrizio; Huckleberry, Alan T

    2006-01-01

    Present an overview of developments in Complex Geometry. This book covers topics that range from curve and surface theory through special varieties in higher dimensions, moduli theory, Kahler geometry, and group actions to Hodge theory and characteristic p-geometry.

  13. Graph-drawing algorithms geometries versus molecular mechanics in fullereness

    Science.gov (United States)

    Kaufman, M.; Pisanski, T.; Lukman, D.; Borštnik, B.; Graovac, A.

    1996-09-01

    The algorithms of Kamada-Kawai (KK) and Fruchterman-Reingold (FR) have been recently generalized (Pisanski et al., Croat. Chem. Acta 68 (1995) 283) in order to draw molecular graphs in three-dimensional space. The quality of KK and FR geometries is studied here by comparing them with the molecular mechanics (MM) and the adjacency matrix eigenvectors (AME) algorithm geometries. In order to compare different layouts of the same molecule, an appropriate method has been developed. Its application to a series of experimentally detected fullerenes indicates that the KK, FR and AME algorithms are able to reproduce plausible molecular geometries.

  14. Theory of reproducing kernels and applications

    CERN Document Server

    Saitoh, Saburou

    2016-01-01

    This book provides a large extension of the general theory of reproducing kernels published by N. Aronszajn in 1950, with many concrete applications. In Chapter 1, many concrete reproducing kernels are first introduced with detailed information. Chapter 2 presents a general and global theory of reproducing kernels with basic applications in a self-contained way. Many fundamental operations among reproducing kernel Hilbert spaces are dealt with. Chapter 2 is the heart of this book. Chapter 3 is devoted to the Tikhonov regularization using the theory of reproducing kernels with applications to numerical and practical solutions of bounded linear operator equations. In Chapter 4, the numerical real inversion formulas of the Laplace transform are presented by applying the Tikhonov regularization, where the reproducing kernels play a key role in the results. Chapter 5 deals with ordinary differential equations; Chapter 6 includes many concrete results for various fundamental partial differential equations. In Chapt...

  15. Cloaking of 2D particle geometries in a surface medium

    Energy Technology Data Exchange (ETDEWEB)

    Alexopoulos, A., E-mail: Aris.Alexopoulos@dsto.defence.gov.au [Electronic Warfare and Radar Division, Defence Science and Technology Organisation (DSTO), PO Box 1500, Edinburgh 5111 (Australia); Yau, K.S.B. [Electronic Warfare and Radar Division, Defence Science and Technology Organisation (DSTO), PO Box 1500, Edinburgh 5111 (Australia)

    2013-06-17

    We theoretically examine the cloaking condition for two-dimensional particles with varying geometry embedded inside a surface medium. General solutions are obtained for multi-layer particle configurations with either all positive or partially negative constitutive parameters respectively. Cloaking of particle geometries that are large relative to the incident wavelength is demonstrated. Theoretical predictions are compared to full-wave numerical simulations for arrays of particles consisting of different geometries.

  16. Sources of hyperbolic geometry

    CERN Document Server

    Stillwell, John

    1996-01-01

    This book presents, for the first time in English, the papers of Beltrami, Klein, and Poincaré that brought hyperbolic geometry into the mainstream of mathematics. A recognition of Beltrami comparable to that given the pioneering works of Bolyai and Lobachevsky seems long overdue-not only because Beltrami rescued hyperbolic geometry from oblivion by proving it to be logically consistent, but because he gave it a concrete meaning (a model) that made hyperbolic geometry part of ordinary mathematics. The models subsequently discovered by Klein and Poincaré brought hyperbolic geometry even further down to earth and paved the way for the current explosion of activity in low-dimensional geometry and topology. By placing the works of these three mathematicians side by side and providing commentaries, this book gives the student, historian, or professional geometer a bird's-eye view of one of the great episodes in mathematics. The unified setting and historical context reveal the insights of Beltrami, Klein, and Po...

  17. Generalizing optical geometry

    International Nuclear Information System (INIS)

    Jonsson, Rickard; Westman, Hans

    2006-01-01

    We show that by employing the standard projected curvature as a measure of spatial curvature, we can make a certain generalization of optical geometry (Abramowicz M A and Lasota J-P 1997 Class. Quantum Grav. A 14 23-30). This generalization applies to any spacetime that admits a hypersurface orthogonal shearfree congruence of worldlines. This is a somewhat larger class of spacetimes than the conformally static spacetimes assumed in standard optical geometry. In the generalized optical geometry, which in the generic case is time dependent, photons move with unit speed along spatial geodesics and the sideways force experienced by a particle following a spatially straight line is independent of the velocity. Also gyroscopes moving along spatial geodesics do not precess (relative to the forward direction). Gyroscopes that follow a curved spatial trajectory precess according to a very simple law of three-rotation. We also present an inertial force formalism in coordinate representation for this generalization. Furthermore, we show that by employing a new sense of spatial curvature (Jonsson R 2006 Class. Quantum Grav. 23 1)) closely connected to Fermat's principle, we can make a more extensive generalization of optical geometry that applies to arbitrary spacetimes. In general this optical geometry will be time dependent, but still geodesic photons move with unit speed and follow lines that are spatially straight in the new sense. Also, the sideways experienced (comoving) force on a test particle following a line that is straight in the new sense will be independent of the velocity

  18. Computational synthetic geometry

    CERN Document Server

    Bokowski, Jürgen

    1989-01-01

    Computational synthetic geometry deals with methods for realizing abstract geometric objects in concrete vector spaces. This research monograph considers a large class of problems from convexity and discrete geometry including constructing convex polytopes from simplicial complexes, vector geometries from incidence structures and hyperplane arrangements from oriented matroids. It turns out that algorithms for these constructions exist if and only if arbitrary polynomial equations are decidable with respect to the underlying field. Besides such complexity theorems a variety of symbolic algorithms are discussed, and the methods are applied to obtain new mathematical results on convex polytopes, projective configurations and the combinatorics of Grassmann varieties. Finally algebraic varieties characterizing matroids and oriented matroids are introduced providing a new basis for applying computer algebra methods in this field. The necessary background knowledge is reviewed briefly. The text is accessible to stud...

  19. Discrete and computational geometry

    CERN Document Server

    Devadoss, Satyan L

    2011-01-01

    Discrete geometry is a relatively new development in pure mathematics, while computational geometry is an emerging area in applications-driven computer science. Their intermingling has yielded exciting advances in recent years, yet what has been lacking until now is an undergraduate textbook that bridges the gap between the two. Discrete and Computational Geometry offers a comprehensive yet accessible introduction to this cutting-edge frontier of mathematics and computer science. This book covers traditional topics such as convex hulls, triangulations, and Voronoi diagrams, as well as more recent subjects like pseudotriangulations, curve reconstruction, and locked chains. It also touches on more advanced material, including Dehn invariants, associahedra, quasigeodesics, Morse theory, and the recent resolution of the Poincaré conjecture. Connections to real-world applications are made throughout, and algorithms are presented independently of any programming language. This richly illustrated textbook also fe...

  20. Geometry and Cloaking Devices

    Science.gov (United States)

    Ochiai, T.; Nacher, J. C.

    2011-09-01

    Recently, the application of geometry and conformal mappings to artificial materials (metamaterials) has attracted the attention in various research communities. These materials, characterized by a unique man-made structure, have unusual optical properties, which materials found in nature do not exhibit. By applying the geometry and conformal mappings theory to metamaterial science, it may be possible to realize so-called "Harry Potter cloaking device". Although such a device is still in the science fiction realm, several works have shown that by using such metamaterials it may be possible to control the direction of the electromagnetic field at will. We could then make an object hidden inside of a cloaking device. Here, we will explain how to design invisibility device using differential geometry and conformal mappings.

  1. Lectures on discrete geometry

    CERN Document Server

    2002-01-01

    Discrete geometry investigates combinatorial properties of configurations of geometric objects. To a working mathematician or computer scientist, it offers sophisticated results and techniques of great diversity and it is a foundation for fields such as computational geometry or combinatorial optimization. This book is primarily a textbook introduction to various areas of discrete geometry. In each area, it explains several key results and methods, in an accessible and concrete manner. It also contains more advanced material in separate sections and thus it can serve as a collection of surveys in several narrower subfields. The main topics include: basics on convex sets, convex polytopes, and hyperplane arrangements; combinatorial complexity of geometric configurations; intersection patterns and transversals of convex sets; geometric Ramsey-type results; polyhedral combinatorics and high-dimensional convexity; and lastly, embeddings of finite metric spaces into normed spaces. Jiri Matousek is Professor of Com...

  2. Complex differential geometry

    CERN Document Server

    Zheng, Fangyang

    2002-01-01

    The theory of complex manifolds overlaps with several branches of mathematics, including differential geometry, algebraic geometry, several complex variables, global analysis, topology, algebraic number theory, and mathematical physics. Complex manifolds provide a rich class of geometric objects, for example the (common) zero locus of any generic set of complex polynomials is always a complex manifold. Yet complex manifolds behave differently than generic smooth manifolds; they are more coherent and fragile. The rich yet restrictive character of complex manifolds makes them a special and interesting object of study. This book is a self-contained graduate textbook that discusses the differential geometric aspects of complex manifolds. The first part contains standard materials from general topology, differentiable manifolds, and basic Riemannian geometry. The second part discusses complex manifolds and analytic varieties, sheaves and holomorphic vector bundles, and gives a brief account of the surface classifi...

  3. Optimization of Overtopping Wave Energy Converters by Geometry Control

    DEFF Research Database (Denmark)

    Victor, L.; Troch, P.; Kofoed, Jens Peter

    2011-01-01

    In this paper, the results of a study on the effects of geometry control on the performance of overtopping wave energy converters with a simple geometry built in coastal structures (simple OWECs) are presented. Empirical formulae, derived based on experimental tests on simple OWECs with varying...

  4. Geometry and symmetry

    CERN Document Server

    Yale, Paul B

    2012-01-01

    This book is an introduction to the geometry of Euclidean, affine, and projective spaces with special emphasis on the important groups of symmetries of these spaces. The two major objectives of the text are to introduce the main ideas of affine and projective spaces and to develop facility in handling transformations and groups of transformations. Since there are many good texts on affine and projective planes, the author has concentrated on the n-dimensional cases.Designed to be used in advanced undergraduate mathematics or physics courses, the book focuses on ""practical geometry,"" emphasi

  5. Non-Perturbative Quantum Geometry III

    CERN Document Server

    Krefl, Daniel

    2016-08-02

    The Nekrasov-Shatashvili limit of the refined topological string on toric Calabi-Yau manifolds and the resulting quantum geometry is studied from a non-perturbative perspective. The quantum differential and thus the quantum periods exhibit Stockes phenomena over the combined string coupling and quantized Kaehler moduli space. We outline that the underlying formalism of exact quantization is generally applicable to points in moduli space featuring massless hypermultiplets, leading to non-perturbative band splitting. Our prime example is local P1xP1 near a conifold point in moduli space. In particular, we will present numerical evidence that in a Stockes chamber of interest the string based quantum geometry reproduces the non-perturbative corrections for the Nekrasov-Shatashvili limit of 4d supersymmetric SU(2) gauge theory at strong coupling found in the previous part of this series. A preliminary discussion of local P2 near the conifold point in moduli space is also provided.

  6. Axially perpendicular offset Raman scheme for reproducible measurement of housed samples in a noncircular container under variation of container orientation.

    Science.gov (United States)

    Duy, Pham K; Chang, Kyeol; Sriphong, Lawan; Chung, Hoeil

    2015-03-17

    An axially perpendicular offset (APO) scheme that is able to directly acquire reproducible Raman spectra of samples contained in an oval container under variation of container orientation has been demonstrated. This scheme utilized an axially perpendicular geometry between the laser illumination and the Raman photon detection, namely, irradiation through a sidewall of the container and gathering of the Raman photon just beneath the container. In the case of either backscattering or transmission measurements, Raman sampling volumes for an internal sample vary when the orientation of an oval container changes; therefore, the Raman intensities of acquired spectra are inconsistent. The generated Raman photons traverse the same bottom of the container in the APO scheme; the Raman sampling volumes can be relatively more consistent under the same situation. For evaluation, the backscattering, transmission, and APO schemes were simultaneously employed to measure alcohol gel samples contained in an oval polypropylene container at five different orientations and then the accuracies of the determination of the alcohol concentrations were compared. The APO scheme provided the most reproducible spectra, yielding the best accuracy when the axial offset distance was 10 mm. Monte Carlo simulations were performed to study the characteristics of photon propagation in the APO scheme and to explain the origin of the optimal offset distance that was observed. In addition, the utility of the APO scheme was further demonstrated by analyzing samples in a circular glass container.

  7. Reproducibility of surface roughness in reaming

    DEFF Research Database (Denmark)

    Müller, Pavel; De Chiffre, Leonardo

    An investigation on the reproducibility of surface roughness in reaming was performed to document the applicability of this approach for testing cutting fluids. Austenitic stainless steel was used as a workpiece material and HSS reamers as cutting tools. Reproducibility of the results was evaluat...

  8. Reproducibility principles, problems, practices, and prospects

    CERN Document Server

    Maasen, Sabine

    2016-01-01

    Featuring peer-reviewed contributions from noted experts in their fields of research, Reproducibility: Principles, Problems, Practices, and Prospects presents state-of-the-art approaches to reproducibility, the gold standard sound science, from multi- and interdisciplinary perspectives. Including comprehensive coverage for implementing and reflecting the norm of reproducibility in various pertinent fields of research, the book focuses on how the reproducibility of results is applied, how it may be limited, and how such limitations can be understood or even controlled in the natural sciences, computational sciences, life sciences, social sciences, and studies of science and technology. The book presents many chapters devoted to a variety of methods and techniques, as well as their epistemic and ontological underpinnings, which have been developed to safeguard reproducible research and curtail deficits and failures. The book also investigates the political, historical, and social practices that underlie repro...

  9. Geometry of Hamiltonian chaos

    DEFF Research Database (Denmark)

    Horwitz, Lawrence; Zion, Yossi Ben; Lewkowicz, Meir

    2007-01-01

    The characterization of chaotic Hamiltonian systems in terms of the curvature associated with a Riemannian metric tensor in the structure of the Hamiltonian is extended to a wide class of potential models of standard form through definition of a conformal metric. The geodesic equations reproduce ...

  10. Towards relativistic quantum geometry

    Energy Technology Data Exchange (ETDEWEB)

    Ridao, Luis Santiago [Instituto de Investigaciones Físicas de Mar del Plata (IFIMAR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Mar del Plata (Argentina); Bellini, Mauricio, E-mail: mbellini@mdp.edu.ar [Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Funes 3350, C.P. 7600, Mar del Plata (Argentina); Instituto de Investigaciones Físicas de Mar del Plata (IFIMAR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Mar del Plata (Argentina)

    2015-12-17

    We obtain a gauge-invariant relativistic quantum geometry by using a Weylian-like manifold with a geometric scalar field which provides a gauge-invariant relativistic quantum theory in which the algebra of the Weylian-like field depends on observers. An example for a Reissner–Nordström black-hole is studied.

  11. Multiplicity in difference geometry

    OpenAIRE

    Tomasic, Ivan

    2011-01-01

    We prove a first principle of preservation of multiplicity in difference geometry, paving the way for the development of a more general intersection theory. In particular, the fibres of a \\sigma-finite morphism between difference curves are all of the same size, when counted with correct multiplicities.

  12. Spacetime and Euclidean geometry

    Science.gov (United States)

    Brill, Dieter; Jacobson, Ted

    2006-04-01

    Using only the principle of relativity and Euclidean geometry we show in this pedagogical article that the square of proper time or length in a two-dimensional spacetime diagram is proportional to the Euclidean area of the corresponding causal domain. We use this relation to derive the Minkowski line element by two geometric proofs of the spacetime Pythagoras theorem.

  13. Physics and geometry

    International Nuclear Information System (INIS)

    Konopleva, N.P.

    2009-01-01

    The basic ideas of description methods of physical fields and elementary particle interactions are discussed. One of such ideas is the conception of space-time geometry. In this connection experimental measurement methods are analyzed. It is shown that measure procedures are the origin of geometrical axioms. The connection between space symmetry properties and the conservation laws is considered

  14. Origami, Geometry and Art

    Science.gov (United States)

    Wares, Arsalan; Elstak, Iwan

    2017-01-01

    The purpose of this paper is to describe the mathematics that emanates from the construction of an origami box. We first construct a simple origami box from a rectangular sheet and then discuss some of the mathematical questions that arise in the context of geometry and algebra. The activity can be used as a context for illustrating how algebra…

  15. Gravity is Geometry.

    Science.gov (United States)

    MacKeown, P. K.

    1984-01-01

    Clarifies two concepts of gravity--those of a fictitious force and those of how space and time may have geometry. Reviews the position of Newton's theory of gravity in the context of special relativity and considers why gravity (as distinct from electromagnetics) lends itself to Einstein's revolutionary interpretation. (JN)

  16. Towards a Nano Geometry?

    DEFF Research Database (Denmark)

    Booss-Bavnbek, Bernhelm

    2011-01-01

    This paper applies I.M. Gelfand's distinction between adequate and non-adequate use of mathematical language in different contexts to the newly opened window of model-based measurements of intracellular dynamics. The specifics of geometry and dynamics on the mesoscale of cell physiology are elabo...

  17. Diophantine geometry an introduction

    CERN Document Server

    Hindry, Marc

    2000-01-01

    This is an introduction to diophantine geometry at the advanced graduate level. The book contains a proof of the Mordell conjecture which will make it quite attractive to graduate students and professional mathematicians. In each part of the book, the reader will find numerous exercises.

  18. Sliding vane geometry turbines

    Science.gov (United States)

    Sun, Harold Huimin; Zhang, Jizhong; Hu, Liangjun; Hanna, Dave R

    2014-12-30

    Various systems and methods are described for a variable geometry turbine. In one example, a turbine nozzle comprises a central axis and a nozzle vane. The nozzle vane includes a stationary vane and a sliding vane. The sliding vane is positioned to slide in a direction substantially tangent to an inner circumference of the turbine nozzle and in contact with the stationary vane.

  19. History of analytic geometry

    CERN Document Server

    Boyer, Carl B

    2012-01-01

    Designed as an integrated survey of the development of analytic geometry, this study presents the concepts and contributions from before the Alexandrian Age through the eras of the great French mathematicians Fermat and Descartes, and on through Newton and Euler to the "Golden Age," from 1789 to 1850.

  20. Non-euclidean geometry

    CERN Document Server

    Coxeter, HSM

    1965-01-01

    This textbook introduces non-Euclidean geometry, and the third edition adds a new chapter, including a description of the two families of 'mid-lines' between two given lines and an elementary derivation of the basic formulae of spherical trigonometry and hyperbolic trigonometry, and other new material.

  1. Topics in Riemannian geometry

    International Nuclear Information System (INIS)

    Ezin, J.P.

    1988-08-01

    The lectures given at the ''5th Symposium of Mathematics in Abidjan: Differential Geometry and Mechanics'' are presented. They are divided into four chapters: Riemannian metric on a differential manifold, curvature tensor fields on a Riemannian manifold, some classical functionals on Riemannian manifolds and questions. 11 refs

  2. Geometry Euclid and beyond

    CERN Document Server

    Hartshorne, Robin

    2000-01-01

    In recent years, I have been teaching a junior-senior-level course on the classi­ cal geometries. This book has grown out of that teaching experience. I assume only high-school geometry and some abstract algebra. The course begins in Chapter 1 with a critical examination of Euclid's Elements. Students are expected to read concurrently Books I-IV of Euclid's text, which must be obtained sepa­ rately. The remainder of the book is an exploration of questions that arise natu­ rally from this reading, together with their modern answers. To shore up the foundations we use Hilbert's axioms. The Cartesian plane over a field provides an analytic model of the theory, and conversely, we see that one can introduce coordinates into an abstract geometry. The theory of area is analyzed by cutting figures into triangles. The algebra of field extensions provides a method for deciding which geometrical constructions are possible. The investigation of the parallel postulate leads to the various non-Euclidean geometries. And ...

  3. Learning Reproducibility with a Yearly Networking Contest

    KAUST Repository

    Canini, Marco

    2017-08-10

    Better reproducibility of networking research results is currently a major goal that the academic community is striving towards. This position paper makes the case that improving the extent and pervasiveness of reproducible research can be greatly fostered by organizing a yearly international contest. We argue that holding a contest undertaken by a plurality of students will have benefits that are two-fold. First, it will promote hands-on learning of skills that are helpful in producing artifacts at the replicable-research level. Second, it will advance the best practices regarding environments, testbeds, and tools that will aid the tasks of reproducibility evaluation committees by and large.

  4. The Economics of Reproducibility in Preclinical Research.

    Directory of Open Access Journals (Sweden)

    Leonard P Freedman

    2015-06-01

    Full Text Available Low reproducibility rates within life science research undermine cumulative knowledge production and contribute to both delays and costs of therapeutic drug development. An analysis of past studies indicates that the cumulative (total prevalence of irreproducible preclinical research exceeds 50%, resulting in approximately US$28,000,000,000 (US$28B/year spent on preclinical research that is not reproducible-in the United States alone. We outline a framework for solutions and a plan for long-term improvements in reproducibility rates that will help to accelerate the discovery of life-saving therapies and cures.

  5. Thou Shalt Be Reproducible! A Technology Perspective

    Directory of Open Access Journals (Sweden)

    Patrick Mair

    2016-07-01

    Full Text Available This article elaborates on reproducibility in psychology from a technological viewpoint. Modernopen source computational environments are shown and explained that foster reproducibilitythroughout the whole research life cycle, and to which emerging psychology researchers shouldbe sensitized, are shown and explained. First, data archiving platforms that make datasets publiclyavailable are presented. Second, R is advocated as the data-analytic lingua franca in psychologyfor achieving reproducible statistical analysis. Third, dynamic report generation environments forwriting reproducible manuscripts that integrate text, data analysis, and statistical outputs such asfigures and tables in a single document are described. Supplementary materials are provided inorder to get the reader started with these technologies.

  6. Multivariate calculus and geometry

    CERN Document Server

    Dineen, Seán

    2014-01-01

    Multivariate calculus can be understood best by combining geometric insight, intuitive arguments, detailed explanations and mathematical reasoning. This textbook has successfully followed this programme. It additionally provides a solid description of the basic concepts, via familiar examples, which are then tested in technically demanding situations. In this new edition the introductory chapter and two of the chapters on the geometry of surfaces have been revised. Some exercises have been replaced and others provided with expanded solutions. Familiarity with partial derivatives and a course in linear algebra are essential prerequisites for readers of this book. Multivariate Calculus and Geometry is aimed primarily at higher level undergraduates in the mathematical sciences. The inclusion of many practical examples involving problems of several variables will appeal to mathematics, science and engineering students.

  7. Transformational plane geometry

    CERN Document Server

    Umble, Ronald N

    2014-01-01

    Axioms of Euclidean Plane Geometry The Existence and Incidence Postulates The Distance and Ruler Postulates The Plane Separation Postulate The Protractor Postulate The Side-Angle-Side Postulate and the Euclidean Parallel Postulate Theorems of Euclidean Plane Geometry The Exterior Angle Theorem Triangle Congruence Theorems The Alternate Interior Angles Theorem and the Angle Sum Theorem Similar Triangles Introduction to Transformations, Isometries, and Similarities Transformations Isometries and SimilaritiesAppendix: Proof of Surjectivity Translations, Rotations, and Reflections Translations Rotations Reflections Appendix: Geometer's Sketchpad Commands Required by Exploratory Activities Compositions of Translations, Rotations, and Reflections The Three Points Theorem Rotations as Compositions of Two Reflections Translations as Compositions of Two Halfturns or Two Reflections The Angle Addition Theorem Glide Reflections Classification of Isometries The Fundamental Theorem and Congruence Classification of Isometr...

  8. Multilevel geometry optimization

    Science.gov (United States)

    Rodgers, Jocelyn M.; Fast, Patton L.; Truhlar, Donald G.

    2000-02-01

    Geometry optimization has been carried out for three test molecules using six multilevel electronic structure methods, in particular Gaussian-2, Gaussian-3, multicoefficient G2, multicoefficient G3, and two multicoefficient correlation methods based on correlation-consistent basis sets. In the Gaussian-2 and Gaussian-3 methods, various levels are added and subtracted with unit coefficients, whereas the multicoefficient Gaussian-x methods involve noninteger parameters as coefficients. The multilevel optimizations drop the average error in the geometry (averaged over the 18 cases) by a factor of about two when compared to the single most expensive component of a given multilevel calculation, and in all 18 cases the accuracy of the atomization energy for the three test molecules improves; with an average improvement of 16.7 kcal/mol.

  9. Multilevel geometry optimization

    Energy Technology Data Exchange (ETDEWEB)

    Rodgers, Jocelyn M. [Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431 (United States); Fast, Patton L. [Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431 (United States); Truhlar, Donald G. [Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431 (United States)

    2000-02-15

    Geometry optimization has been carried out for three test molecules using six multilevel electronic structure methods, in particular Gaussian-2, Gaussian-3, multicoefficient G2, multicoefficient G3, and two multicoefficient correlation methods based on correlation-consistent basis sets. In the Gaussian-2 and Gaussian-3 methods, various levels are added and subtracted with unit coefficients, whereas the multicoefficient Gaussian-x methods involve noninteger parameters as coefficients. The multilevel optimizations drop the average error in the geometry (averaged over the 18 cases) by a factor of about two when compared to the single most expensive component of a given multilevel calculation, and in all 18 cases the accuracy of the atomization energy for the three test molecules improves; with an average improvement of 16.7 kcal/mol. (c) 2000 American Institute of Physics.

  10. Geometry and Destiny

    OpenAIRE

    Krauss, Lawrence M.; Turner, Michael S.

    1999-01-01

    The recognition that the cosmological constant may be non-zero forces us to re-evaluate standard notions about the connection between geometry and the fate of our Universe. An open Universe can recollapse, and a closed Universe can expand forever. As a corollary, we point out that there is no set of cosmological observations we can perform that will unambiguously allow us to determine what the ultimate destiny of the Universe will be.

  11. Complex geometries in wood

    DEFF Research Database (Denmark)

    Tamke, Martin; Ramsgaard Thomsen, Mette; Riiber Nielsen, Jacob

    2009-01-01

    The versatility of wood constructions and traditional wood joints for the production of non standard elements was in focus of a design based research. Herein we established a seamless process from digital design to fabrication. A first research phase centered on the development of a robust...... parametric model and a generic design language a later explored the possibilities to construct complex shaped geometries with self registering joints on modern wood crafting machines. The research was carried out as collaboration with industrial partners....

  12. Electroweak vacuum geometry

    International Nuclear Information System (INIS)

    Lepora, N.; Kibble, T.

    1999-01-01

    We analyse symmetry breaking in the Weinberg-Salam model paying particular attention to the underlying geometry of the theory. In this context we find two natural metrics upon the vacuum manifold: an isotropic metric associated with the scalar sector, and a squashed metric associated with the gauge sector. Physically, the interplay between these metrics gives rise to many of the non-perturbative features of Weinberg-Salam theory. (author)

  13. W-geometry

    International Nuclear Information System (INIS)

    Hull, C.M.

    1993-01-01

    The geometric structure of theories with gauge fields of spins two and higher should involve a higher spin generalisation of Riemannian geometry. Such geometries are discussed and the case of W ∝ -gravity is analysed in detail. While the gauge group for gravity in d dimensions is the diffeomorphism group of the space-time, the gauge group for a certain W-gravity theory (which is W ∝ -gravity in the case d=2) is the group of symplectic diffeomorphisms of the cotangent bundle of the space-time. Gauge transformations for W-gravity gauge fields are given by requiring the invariance of a generalised line element. Densities exist and can be constructed from the line element (generalising √detg μν ) only if d=1 or d=2, so that only for d=1,2 can actions be constructed. These two cases and the corresponding W-gravity actions are considered in detail. In d=2, the gauge group is effectively only a subgroup of the symplectic diffeomorphisms group. Some of the constraints that arise for d=2 are similar to equations arising in the study of self-dual four-dimensional geometries and can be analysed using twistor methods, allowing contact to be made with other formulations of W-gravity. While the twistor transform for self-dual spaces with one Killing vector reduces to a Legendre transform, that for two Killing vectors gives a generalisation of the Legendre transform. (orig.)

  14. Integral geometry and valuations

    CERN Document Server

    Solanes, Gil

    2014-01-01

    Valuations are finitely additive functionals on the space of convex bodies. Their study has become a central subject in convexity theory, with fundamental applications to integral geometry. In the last years there has been significant progress in the theory of valuations, which in turn has led to important achievements in integral geometry. This book originated from two courses delivered by the authors at the CRM and provides a self-contained introduction to these topics, covering most of the recent advances. The first part, by Semyon Alesker, is devoted to the theory of convex valuations, with emphasis on the latest developments. A special focus is put on the new fundamental structures of the space of valuations discovered after Alesker's irreducibility theorem. Moreover, the author describes the newly developed theory of valuations on manifolds. In the second part, Joseph H. G. Fu gives a modern introduction to integral geometry in the sense of Blaschke and Santaló, based on the notions and tools presented...

  15. CBM RICH geometry optimization

    Energy Technology Data Exchange (ETDEWEB)

    Mahmoud, Tariq; Hoehne, Claudia [II. Physikalisches Institut, Giessen Univ. (Germany); Collaboration: CBM-Collaboration

    2016-07-01

    The Compressed Baryonic Matter (CBM) experiment at the future FAIR complex will investigate the phase diagram of strongly interacting matter at high baryon density and moderate temperatures in A+A collisions from 2-11 AGeV (SIS100) beam energy. The main electron identification detector in the CBM experiment will be a RICH detector with a CO{sub 2} gaseous-radiator, focusing spherical glass mirrors, and MAPMT photo-detectors being placed on a PMT-plane. The RICH detector is located directly behind the CBM dipole magnet. As the final magnet geometry is now available, some changes in the RICH geometry become necessary. In order to guarantee a magnetic field of 1 mT at maximum in the PMT plane for effective operation of the MAPMTs, two measures have to be taken: The PMT plane is moved outwards of the stray field by tilting the mirrors by 10 degrees and shielding boxes have been designed. In this contribution the results of the geometry optimization procedure are presented.

  16. Examination of reproducibility in microbiological degredation experiments

    DEFF Research Database (Denmark)

    Sommer, Helle Mølgaard; Spliid, Henrik; Holst, Helle

    1998-01-01

    Experimental data indicate that certain microbiological degradation experiments have a limited reproducibility. Nine identical batch experiments were carried out on 3 different days to examine reproducibility. A pure culture, isolated from soil, grew with toluene as the only carbon and energy...... source. Toluene was degraded under aerobic conditions at a constant temperature of 28 degreesC. The experiments were modelled by a Monod model - extended to meet the air/liquid system, and the parameter values were estimated using a statistical nonlinear estimation procedure. Model reduction analysis...... resulted in a simpler model without the biomass decay term. In order to test for model reduction and reproducibility of parameter estimates, a likelihood ratio test was employed. The limited reproducibility for these experiments implied that all 9 batch experiments could not be described by the same set...

  17. Archiving Reproducible Research with R and Dataverse

    DEFF Research Database (Denmark)

    Leeper, Thomas

    2014-01-01

    Reproducible research and data archiving are increasingly important issues in research involving statistical analyses of quantitative data. This article introduces the dvn package, which allows R users to publicly archive datasets, analysis files, codebooks, and associated metadata in Dataverse...

  18. Introducing geometry concept based on history of Islamic geometry

    Science.gov (United States)

    Maarif, S.; Wahyudin; Raditya, A.; Perbowo, K. S.

    2018-01-01

    Geometry is one of the areas of mathematics interesting to discuss. Geometry also has a long history in mathematical developments. Therefore, it is important integrated historical development of geometry in the classroom to increase’ knowledge of how mathematicians earlier finding and constructing a geometric concept. Introduction geometrical concept can be started by introducing the Muslim mathematician who invented these concepts so that students can understand in detail how a concept of geometry can be found. However, the history of mathematics development, especially history of Islamic geometry today is less popular in the world of education in Indonesia. There are several concepts discovered by Muslim mathematicians that should be appreciated by the students in learning geometry. Great ideas of mathematicians Muslim can be used as study materials to supplement religious character values taught by Muslim mathematicians. Additionally, by integrating the history of geometry in teaching geometry are expected to improve motivation and geometrical understanding concept.

  19. Reproducing Epidemiologic Research and Ensuring Transparency.

    Science.gov (United States)

    Coughlin, Steven S

    2017-08-15

    Measures for ensuring that epidemiologic studies are reproducible include making data sets and software available to other researchers so they can verify published findings, conduct alternative analyses of the data, and check for statistical errors or programming errors. Recent developments related to the reproducibility and transparency of epidemiologic studies include the creation of a global platform for sharing data from clinical trials and the anticipated future extension of the global platform to non-clinical trial data. Government agencies and departments such as the US Department of Veterans Affairs Cooperative Studies Program have also enhanced their data repositories and data sharing resources. The Institute of Medicine and the International Committee of Medical Journal Editors released guidance on sharing clinical trial data. The US National Institutes of Health has updated their data-sharing policies. In this issue of the Journal, Shepherd et al. (Am J Epidemiol. 2017;186:387-392) outline a pragmatic approach for reproducible research with sensitive data for studies for which data cannot be shared because of legal or ethical restrictions. Their proposed quasi-reproducible approach facilitates the dissemination of statistical methods and codes to independent researchers. Both reproducibility and quasi-reproducibility can increase transparency for critical evaluation, further dissemination of study methods, and expedite the exchange of ideas among researchers. © The Author(s) 2017. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  20. Two lectures on D-geometry and noncommutative geometry

    International Nuclear Information System (INIS)

    Douglas, M.R.

    1999-01-01

    This is a write-up of lectures given at the 1998 Spring School at the Abdus Salam ICTP. We give a conceptual introduction to D-geometry, the study of geometry as seen by D-branes in string theory, and to noncommutative geometry as it has appeared in D-brane and Matrix theory physics. (author)

  1. Reproducibility of airway luminal size in asthma measured by HRCT.

    Science.gov (United States)

    Brown, Robert H; Henderson, Robert J; Sugar, Elizabeth A; Holbrook, Janet T; Wise, Robert A

    2017-10-01

    Brown RH, Henderson RJ, Sugar EA, Holbrook JT, Wise RA, on behalf of the American Lung Association Airways Clinical Research Centers. Reproducibility of airway luminal size in asthma measured by HRCT. J Appl Physiol 123: 876-883, 2017. First published July 13, 2017; doi:10.1152/japplphysiol.00307.2017.-High-resolution CT (HRCT) is a well-established imaging technology used to measure lung and airway morphology in vivo. However, there is a surprising lack of studies examining HRCT reproducibility. The CPAP Trial was a multicenter, randomized, three-parallel-arm, sham-controlled 12-wk clinical trial to assess the use of a nocturnal continuous positive airway pressure (CPAP) device on airway reactivity to methacholine. The lack of a treatment effect of CPAP on clinical or HRCT measures provided an opportunity for the current analysis. We assessed the reproducibility of HRCT imaging over 12 wk. Intraclass correlation coefficients (ICCs) were calculated for individual airway segments, individual lung lobes, both lungs, and air trapping. The ICC [95% confidence interval (CI)] for airway luminal size at total lung capacity ranged from 0.95 (0.91, 0.97) to 0.47 (0.27, 0.69). The ICC (95% CI) for airway luminal size at functional residual capacity ranged from 0.91 (0.85, 0.95) to 0.32 (0.11, 0.65). The ICC measurements for airway distensibility index and wall thickness were lower, ranging from poor (0.08) to moderate (0.63) agreement. The ICC for air trapping at functional residual capacity was 0.89 (0.81, 0.94) and varied only modestly by lobe from 0.76 (0.61, 0.87) to 0.95 (0.92, 0.97). In stable well-controlled asthmatic subjects, it is possible to reproducibly image unstimulated airway luminal areas over time, by region, and by size at total lung capacity throughout the lungs. Therefore, any changes in luminal size on repeat CT imaging are more likely due to changes in disease state and less likely due to normal variability. NEW & NOTEWORTHY There is a surprising lack

  2. Geometry of Quantum States

    International Nuclear Information System (INIS)

    Hook, D W

    2008-01-01

    A geometric framework for quantum mechanics arose during the mid 1970s when authors such as Cantoni explored the notion of generalized transition probabilities, and Kibble promoted the idea that the space of pure quantum states provides a natural quantum mechanical analogue for classical phase space. This central idea can be seen easily since the projection of Schroedinger's equation from a Hilbert space into the space of pure spaces is a set of Hamilton's equations. Over the intervening years considerable work has been carried out by a variety of authors and a mature description of quantum mechanics in geometric terms has emerged with many applications. This current offering would seem ideally placed to review the last thirty years of progress and relate this to the most recent work in quantum entanglement. Bengtsson and Zyczkowski's beautifully illustrated volume, Geometry of Quantum States (referred to as GQS from now on) attempts to cover considerable ground in its 466 pages. Its topics range from colour theory in Chapter 1 to quantum entanglement in Chapter 15-to say that this is a whirlwind tour is, perhaps, no understatement. The use of the work 'introduction' in the subtitle of GQS, might suggest to the reader that this work be viewed as a textbook and I think that this interpretation would be incorrect. The authors have chosen to present a survey of different topics with the specific aim to introduce entanglement in geometric terms-the book is not intended as a pedagogical introduction to the geometric approach to quantum mechanics. Each of the fifteen chapters is a short, and mostly self-contained, essay on a particular aspect or application of geometry in the context of quantum mechanics with entanglement being addressed specifically in the final chapter. The chapters fall into three classifications: those concerned with the mathematical background, those which discuss quantum theory and the foundational aspects of the geometric framework, and

  3. Functional integration over geometries

    International Nuclear Information System (INIS)

    Mottola, E.

    1995-01-01

    The geometric construction of the functional integral over coset spaces M/G is reviewed. The inner product on the cotangent space of infinitesimal deformations of M defines an invariant distance and volume form, or functional integration measure on the full configuration space. Then, by a simple change of coordinates parameterizing the gauge fiber G, the functional measure on the coset space M/G is deduced. This change of integration variables leads to a Jacobian which is entirely equivalent to the Faddeev--Popov determinant of the more traditional gauge fixed approach in non-abelian gauge theory. If the general construction is applied to the case where G is the group of coordinate reparameterizations of spacetime, the continuum functional integral over geometries, i.e. metrics modulo coordinate reparameterizations may be defined. The invariant functional integration measure is used to derive the trace anomaly and effective action for the conformal part of the metric in two and four dimensional spacetime. In two dimensions this approach generates the Polyakov--Liouville action of closed bosonic non-critical string theory. In four dimensions the corresponding effective action leads to novel conclusions on the importance of quantum effects in gravity in the far infrared, and in particular, a dramatic modification of the classical Einstein theory at cosmological distance scales, signaled first by the quantum instability of classical de Sitter spacetime. Finite volume scaling relations for the functional integral of quantum gravity in two and four dimensions are derived, and comparison with the discretized dynamical triangulation approach to the integration over geometries are discussed. Outstanding unsolved problems in both the continuum definition and the simplicial approach to the functional integral over geometries are highlighted

  4. Kinematic geometry of gearing

    CERN Document Server

    Dooner, David B

    2012-01-01

    Building on the first edition published in 1995 this new edition of Kinematic Geometry of Gearing has been extensively revised and updated with new and original material. This includes the methodology for general tooth forms, radius of torsure', cylinder of osculation, and cylindroid of torsure; the author has also completely reworked the '3 laws of gearing', the first law re-written to better parallel the existing 'Law of Gearing" as pioneered by Leonard Euler, expanded from Euler's original law to encompass non-circular gears and hypoid gears, the 2nd law of gearing describing a unique relat

  5. From geometry to topology

    CERN Document Server

    Flegg, H Graham

    2001-01-01

    This excellent introduction to topology eases first-year math students and general readers into the subject by surveying its concepts in a descriptive and intuitive way, attempting to build a bridge from the familiar concepts of geometry to the formalized study of topology. The first three chapters focus on congruence classes defined by transformations in real Euclidean space. As the number of permitted transformations increases, these classes become larger, and their common topological properties become intuitively clear. Chapters 4-12 give a largely intuitive presentation of selected topics.

  6. Torsional heterotic geometries

    International Nuclear Information System (INIS)

    Becker, Katrin; Sethi, Savdeep

    2009-01-01

    We construct new examples of torsional heterotic backgrounds using duality with orientifold flux compactifications. We explain how duality provides a perturbative solution to the type I/heterotic string Bianchi identity. The choice of connection used in the Bianchi identity plays an important role in the construction. We propose the existence of a much larger landscape of compact torsional geometries using string duality. Finally, we present some quantum exact metrics that correspond to NS5-branes placed on an elliptic space. These metrics describe how torus isometries are broken by NS flux.

  7. Geometrie verstehen: statisch - kinematisch

    Science.gov (United States)

    Kroll, Ekkehard

    Dem Allgemeinen steht begrifflich das Besondere gegenüber. In diesem Sinne sind allgemeine Überlegungen zum Verstehen von Mathematik zu ergänzen durch Untersuchungen hinsichtlich des Verstehens der einzelnen mathematischen Disziplinen, insbesondere der Geometrie. Hier haben viele Schülerinnen und Schüler Probleme. Diese rühren hauptsächlich daher, dass eine fertige geometrische Konstruktion in ihrer statischen Präsentation auf Papier nicht mehr die einzelnen Konstruktionsschritte erkennen lässt; zum Nachvollzug müssen sie daher ergänzend in einer Konstruktionsbeschreibung festgehalten werden.

  8. Elementary algebraic geometry

    CERN Document Server

    Kendig, Keith

    2015-01-01

    Designed to make learning introductory algebraic geometry as easy as possible, this text is intended for advanced undergraduates and graduate students who have taken a one-year course in algebra and are familiar with complex analysis. This newly updated second edition enhances the original treatment's extensive use of concrete examples and exercises with numerous figures that have been specially redrawn in Adobe Illustrator. An introductory chapter that focuses on examples of curves is followed by a more rigorous and careful look at plane curves. Subsequent chapters explore commutative ring th

  9. Local analytic geometry

    CERN Document Server

    Abhyankar, Shreeram Shankar

    1964-01-01

    This book provides, for use in a graduate course or for self-study by graduate students, a well-motivated treatment of several topics, especially the following: (1) algebraic treatment of several complex variables; (2) geometric approach to algebraic geometry via analytic sets; (3) survey of local algebra; (4) survey of sheaf theory. The book has been written in the spirit of Weierstrass. Power series play the dominant role. The treatment, being algebraic, is not restricted to complex numbers, but remains valid over any complete-valued field. This makes it applicable to situations arising from

  10. Geometry of conics

    CERN Document Server

    Akopyan, A V

    2007-01-01

    The book is devoted to the properties of conics (plane curves of second degree) that can be formulated and proved using only elementary geometry. Starting with the well-known optical properties of conics, the authors move to less trivial results, both classical and contemporary. In particular, the chapter on projective properties of conics contains a detailed analysis of the polar correspondence, pencils of conics, and the Poncelet theorem. In the chapter on metric properties of conics the authors discuss, in particular, inscribed conics, normals to conics, and the Poncelet theorem for confoca

  11. Geometry and trigonometry

    CERN Document Server

    2015-01-01

    This stimulating volume offers a broad collection of the principles of geometry and trigonometry and contains colorful diagrams to bring mathematical principles to life. Subjects are enriched by references to famous mathematicians and their ideas, and the stories are presented in a very comprehensible way. Readers investigate the relationships of points, lines, surfaces, and solids. They study construction methods for drawing figures, a wealth of facts about these figures, and above all, methods to prove the facts. They learn about triangle measure for circular motion, sine and cosine, tangent

  12. Geometry I essentials

    CERN Document Server

    REA, The Editors of

    2012-01-01

    REA's Essentials provide quick and easy access to critical information in a variety of different fields, ranging from the most basic to the most advanced. As its name implies, these concise, comprehensive study guides summarize the essentials of the field covered. Essentials are helpful when preparing for exams, doing homework and will remain a lasting reference source for students, teachers, and professionals. Geometry I includes methods of proof, points, lines, planes, angles, congruent angles and line segments, triangles, parallelism, quadrilaterals, geometric inequalities, and geometric

  13. Graded geometry and Poisson reduction

    OpenAIRE

    Cattaneo, A S; Zambon, M

    2009-01-01

    The main result of [2] extends the Marsden-Ratiu reduction theorem [4] in Poisson geometry, and is proven by means of graded geometry. In this note we provide the background material about graded geometry necessary for the proof in [2]. Further, we provide an alternative algebraic proof for the main result. ©2009 American Institute of Physics

  14. Time-varying BRDFs.

    Science.gov (United States)

    Sun, Bo; Sunkavalli, Kalyan; Ramamoorthi, Ravi; Belhumeur, Peter N; Nayar, Shree K

    2007-01-01

    The properties of virtually all real-world materials change with time, causing their bidirectional reflectance distribution functions (BRDFs) to be time varying. However, none of the existing BRDF models and databases take time variation into consideration; they represent the appearance of a material at a single time instance. In this paper, we address the acquisition, analysis, modeling, and rendering of a wide range of time-varying BRDFs (TVBRDFs). We have developed an acquisition system that is capable of sampling a material's BRDF at multiple time instances, with each time sample acquired within 36 sec. We have used this acquisition system to measure the BRDFs of a wide range of time-varying phenomena, which include the drying of various types of paints (watercolor, spray, and oil), the drying of wet rough surfaces (cement, plaster, and fabrics), the accumulation of dusts (household and joint compound) on surfaces, and the melting of materials (chocolate). Analytic BRDF functions are fit to these measurements and the model parameters' variations with time are analyzed. Each category exhibits interesting and sometimes nonintuitive parameter trends. These parameter trends are then used to develop analytic TVBRDF models. The analytic TVBRDF models enable us to apply effects such as paint drying and dust accumulation to arbitrary surfaces and novel materials.

  15. Reproducibility of central lumbar vertebral BMD

    International Nuclear Information System (INIS)

    Chan, F.; Pocock, N.; Griffiths, M.; Majerovic, Y.; Freund, J.

    1997-01-01

    Full text: Lumbar vertebral bone mineral density (BMD) using dual X-ray absorptiometry (DXA) has generally been calculated from a region of interest which includes the entire vertebral body. Although this region excludes part of the transverse processes, it does include the outer cortical shell of the vertebra. Recent software has been devised to calculate BMD in a central vertebral region of interest which excludes the outer cortical envelope. Theoretically this area may be more sensitive to detecting osteoporosis which affects trabecular bone to a greater extent than cortical bone. Apart from the sensitivity of BMD estimation, the reproducibility of any measurement is important owing to the slow rate of change of bone mass. We have evaluated the reproducibility of this new vertebral region of interest in 23 women who had duplicate lumbar spine DXA scans performed on the same day. The patients were repositioned between each measurement. Central vertebral analysis was performed for L2-L4 and the reproducibility of area, bone mineral content (BMC) and BMD calculated as the coefficient of variation; these values were compared with those from conventional analysis. Thus we have shown that the reproducibility of the central BMD is comparable to the conventional analysis which is essential if this technique is to provide any additional clinical data. The reasons for the decrease in reproducibility of the area and hence BMC requires further investigation

  16. Reproducibility, controllability, and optimization of LENR experiments

    Energy Technology Data Exchange (ETDEWEB)

    Nagel, David J. [The George Washington University, Washington DC 20052 (United States)

    2006-07-01

    Low-energy nuclear reaction (LENR) measurements are significantly, and increasingly reproducible. Practical control of the production of energy or materials by LENR has yet to be demonstrated. Minimization of costly inputs and maximization of desired outputs of LENR remain for future developments. The paper concludes by underlying that it is now clearly that demands for reproducible experiments in the early years of LENR experiments were premature. In fact, one can argue that irreproducibility should be expected for early experiments in a complex new field. As emphasized in the paper and as often happened in the history of science, experimental and theoretical progress can take even decades. It is likely to be many years before investments in LENR experiments will yield significant returns, even for successful research programs. However, it is clearly that a fundamental understanding of the anomalous effects observed in numerous experiments will significantly increase reproducibility, improve controllability, enable optimization of processes, and accelerate the economic viability of LENR.

  17. Reproducibility, controllability, and optimization of LENR experiments

    International Nuclear Information System (INIS)

    Nagel, David J.

    2006-01-01

    Low-energy nuclear reaction (LENR) measurements are significantly, and increasingly reproducible. Practical control of the production of energy or materials by LENR has yet to be demonstrated. Minimization of costly inputs and maximization of desired outputs of LENR remain for future developments. The paper concludes by underlying that it is now clearly that demands for reproducible experiments in the early years of LENR experiments were premature. In fact, one can argue that irreproducibility should be expected for early experiments in a complex new field. As emphasized in the paper and as often happened in the history of science, experimental and theoretical progress can take even decades. It is likely to be many years before investments in LENR experiments will yield significant returns, even for successful research programs. However, it is clearly that a fundamental understanding of the anomalous effects observed in numerous experiments will significantly increase reproducibility, improve controllability, enable optimization of processes, and accelerate the economic viability of LENR

  18. Undefined cellulase formulations hinder scientific reproducibility.

    Science.gov (United States)

    Himmel, Michael E; Abbas, Charles A; Baker, John O; Bayer, Edward A; Bomble, Yannick J; Brunecky, Roman; Chen, Xiaowen; Felby, Claus; Jeoh, Tina; Kumar, Rajeev; McCleary, Barry V; Pletschke, Brett I; Tucker, Melvin P; Wyman, Charles E; Decker, Stephen R

    2017-01-01

    In the shadow of a burgeoning biomass-to-fuels industry, biological conversion of lignocellulose to fermentable sugars in a cost-effective manner is key to the success of second-generation and advanced biofuel production. For the effective comparison of one cellulase preparation to another, cellulase assays are typically carried out with one or more engineered cellulase formulations or natural exoproteomes of known performance serving as positive controls. When these formulations have unknown composition, as is the case with several widely used commercial products, it becomes impossible to compare or reproduce work done today to work done in the future, where, for example, such preparations may not be available. Therefore, being a critical tenet of science publishing, experimental reproducibility is endangered by the continued use of these undisclosed products. We propose the introduction of standard procedures and materials to produce specific and reproducible cellulase formulations. These formulations are to serve as yardsticks to measure improvements and performance of new cellulase formulations.

  19. Reproducibility of somatosensory spatial perceptual maps.

    Science.gov (United States)

    Steenbergen, Peter; Buitenweg, Jan R; Trojan, Jörg; Veltink, Peter H

    2013-02-01

    Various studies have shown subjects to mislocalize cutaneous stimuli in an idiosyncratic manner. Spatial properties of individual localization behavior can be represented in the form of perceptual maps. Individual differences in these maps may reflect properties of internal body representations, and perceptual maps may therefore be a useful method for studying these representations. For this to be the case, individual perceptual maps need to be reproducible, which has not yet been demonstrated. We assessed the reproducibility of localizations measured twice on subsequent days. Ten subjects participated in the experiments. Non-painful electrocutaneous stimuli were applied at seven sites on the lower arm. Subjects localized the stimuli on a photograph of their own arm, which was presented on a tablet screen overlaying the real arm. Reproducibility was assessed by calculating intraclass correlation coefficients (ICC) for the mean localizations of each electrode site and the slope and offset of regression models of the localizations, which represent scaling and displacement of perceptual maps relative to the stimulated sites. The ICCs of the mean localizations ranged from 0.68 to 0.93; the ICCs of the regression parameters were 0.88 for the intercept and 0.92 for the slope. These results indicate a high degree of reproducibility. We conclude that localization patterns of non-painful electrocutaneous stimuli on the arm are reproducible on subsequent days. Reproducibility is a necessary property of perceptual maps for these to reflect properties of a subject's internal body representations. Perceptual maps are therefore a promising method for studying body representations.

  20. Investigation of Surface Phenomena in Shocked Tin in Converging Geometry

    Energy Technology Data Exchange (ETDEWEB)

    Rousculp, Christopher L. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Oro, David Michael [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Griego, Jeffrey Randall [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Turchi, Peter John [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Reinovsky, Robert Emil [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Bradley, Joseph Thomas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Cheng, Baolian [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Freeman, Matthew Stouten [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Patten, Austin Randall [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-04-14

    There is a great interest in RMI as source of ejecta from metal shells. Previous experiments have explored wavelength amplitude (kA) variation but they have a small range of drive pressures and are in planer geometry. Simulations, both MD and hydro, have explored RMI in planer geometry. The ejecta source model from RMI is an area of active algorithm and code development in ASCI-IC Lagrangian Applications Project. PHELIX offers precise, reproducible variable driver for Hydro and material physics diagnoses with proton radiography.

  1. [Natural head position's reproducibility on photographs].

    Science.gov (United States)

    Eddo, Marie-Line; El Hayeck, Émilie; Hoyeck, Maha; Khoury, Élie; Ghoubril, Joseph

    2017-12-01

    The purpose of this study is to evaluate the reproducibility of natural head position with time on profile photographs. Our sample is composed of 96 students (20-30 years old) at the department of dentistry of Saint Joseph University in Beirut. Two profile photographs were taken in natural head position about a week apart. No significant differences were found between T0 and T1 (E = 1.065°). Many studies confirmed this reproducibility with time. Natural head position can be adopted as an orientation for profile photographs in orthodontics. © EDP Sciences, SFODF, 2017.

  2. Highly reproducible polyol synthesis for silver nanocubes

    Science.gov (United States)

    Han, Hye Ji; Yu, Taekyung; Kim, Woo-Sik; Im, Sang Hyuk

    2017-07-01

    We could synthesize the Ag nanocubes highly reproducibly by conducting the polyol synthesis using HCl etchant in dark condition because the photodecomposition/photoreduction of AgCl nanoparticles formed at initial reaction stage were greatly depressed and consequently the selective self-nucleation of Ag single crystals and their selective growth reaction could be promoted. Whereas the reproducibility of the formation of Ag nanocubes were very poor when we synthesize the Ag nanocubes in light condition due to the photoreduction of AgCl to Ag.

  3. Reproducible statistical analysis with multiple languages

    DEFF Research Database (Denmark)

    Lenth, Russell; Højsgaard, Søren

    2011-01-01

    This paper describes the system for making reproducible statistical analyses. differs from other systems for reproducible analysis in several ways. The two main differences are: (1) Several statistics programs can be in used in the same document. (2) Documents can be prepared using OpenOffice or ......Office or \\LaTeX. The main part of this paper is an example showing how to use and together in an OpenOffice text document. The paper also contains some practical considerations on the use of literate programming in statistics....

  4. Resistor trimming geometry; past, present and future

    International Nuclear Information System (INIS)

    Alafogianni, M; Penlington, R; Birkett, M

    2016-01-01

    This paper explores the key developments in thin film resistive trimming geometry for use in the fabrication of discrete precision resistors. Firstly an introduction to the laser trimming process is given with respect to well established trim geometries such as the plunge, 'L' and serpentine cuts. The effect of these trim patterns on key electrical properties of resistance tolerance and temperature co-efficient of resistance (TCR) of the thin films is then discussed before the performance of more recent geometries such as the three-contact and random trim approaches are reviewed. In addition to the properties of the standard trim patterns, the concept of the heat affected zone (HAZ) and ablation energy and the effect of introducing a 'fine' trim in areas of low current density to improve device performance are also studied. It is shown how trimming geometry and laser parameters can be systematically controlled to produce thin film resistors of the required properties for varying applications such as high precision, long term stability and high power pulse performance

  5. Real algebraic geometry

    CERN Document Server

    Bochnak, Jacek; Roy, Marie-Françoise

    1998-01-01

    This book is a systematic treatment of real algebraic geometry, a subject that has strong interrelation with other areas of mathematics: singularity theory, differential topology, quadratic forms, commutative algebra, model theory, complexity theory etc. The careful and clearly written account covers both basic concepts and up-to-date research topics. It may be used as text for a graduate course. The present edition is a substantially revised and expanded English version of the book "Géometrie algébrique réelle" originally published in French, in 1987, as Volume 12 of ERGEBNISSE. Since the publication of the French version the theory has made advances in several directions. Many of these are included in this English version. Thus the English book may be regarded as a completely new treatment of the subject.

  6. Critique of information geometry

    International Nuclear Information System (INIS)

    Skilling, John

    2014-01-01

    As applied to probability, information geometry fails because probability distributions do not form a metric space. Probability theory rests on a compelling foundation of elementary symmetries, which also support information (aka minus entropy, Kullback-Leibler) H(p;q) as the unique measure of divergence from source probability distribution q to destination p. Because the only compatible connective H is from≠to asymmetric, H(p;q)≠H(q;p), there can be no compatible geometrical distance (which would necessarily be from=to symmetric). Hence there is no distance relationship compatible with the structure of probability theory. Metrics g and densities sqrt(det(g)) interpreted as prior probabilities follow from the definition of distance, and must fail likewise. Various metrics and corresponding priors have been proposed, Fisher's being the most popular, but all must behave unacceptably. This is illustrated with simple counter-examples

  7. Emergent geometry of membranes

    Energy Technology Data Exchange (ETDEWEB)

    Badyn, Mathias Hudoba de; Karczmarek, Joanna L.; Sabella-Garnier, Philippe; Yeh, Ken Huai-Che [Department of Physics and Astronomy, University of British Columbia,6224 Agricultural Road, Vancouver (Canada)

    2015-11-13

    In work http://dx.doi.org/10.1103/PhysRevD.86.086001, a surface embedded in flat ℝ{sup 3} is associated to any three hermitian matrices. We study this emergent surface when the matrices are large, by constructing coherent states corresponding to points in the emergent geometry. We find the original matrices determine not only shape of the emergent surface, but also a unique Poisson structure. We prove that commutators of matrix operators correspond to Poisson brackets. Through our construction, we can realize arbitrary noncommutative membranes: for example, we examine a round sphere with a non-spherically symmetric Poisson structure. We also give a natural construction for a noncommutative torus embedded in ℝ{sup 3}. Finally, we make remarks about area and find matrix equations for minimal area surfaces.

  8. Geometry through history Euclidean, hyperbolic, and projective geometries

    CERN Document Server

    Dillon, Meighan I

    2018-01-01

    Presented as an engaging discourse, this textbook invites readers to delve into the historical origins and uses of geometry. The narrative traces the influence of Euclid’s system of geometry, as developed in his classic text The Elements, through the Arabic period, the modern era in the West, and up to twentieth century mathematics. Axioms and proof methods used by mathematicians from those periods are explored alongside the problems in Euclidean geometry that lead to their work. Students cultivate skills applicable to much of modern mathematics through sections that integrate concepts like projective and hyperbolic geometry with representative proof-based exercises. For its sophisticated account of ancient to modern geometries, this text assumes only a year of college mathematics as it builds towards its conclusion with algebraic curves and quaternions. Euclid’s work has affected geometry for thousands of years, so this text has something to offer to anyone who wants to broaden their appreciation for the...

  9. Reproducing kernel Hilbert spaces of Gaussian priors

    NARCIS (Netherlands)

    Vaart, van der A.W.; Zanten, van J.H.; Clarke, B.; Ghosal, S.

    2008-01-01

    We review definitions and properties of reproducing kernel Hilbert spaces attached to Gaussian variables and processes, with a view to applications in nonparametric Bayesian statistics using Gaussian priors. The rate of contraction of posterior distributions based on Gaussian priors can be described

  10. Reproducibility of the results in ultrasonic testing

    International Nuclear Information System (INIS)

    Chalaye, M.; Launay, J.P.; Thomas, A.

    1980-12-01

    This memorandum reports on the conclusions of the tests carried out in order to evaluate the reproducibility of ultrasonic tests made on welded joints. FRAMATOME have started a study to assess the dispersion of results afforded by the test line and to characterize its behaviour. The tests covered sensors and ultrasonic generators said to be identical to each other (same commercial batch) [fr

  11. Reproducibility in Computational Neuroscience Models and Simulations

    Science.gov (United States)

    McDougal, Robert A.; Bulanova, Anna S.; Lytton, William W.

    2016-01-01

    Objective Like all scientific research, computational neuroscience research must be reproducible. Big data science, including simulation research, cannot depend exclusively on journal articles as the method to provide the sharing and transparency required for reproducibility. Methods Ensuring model reproducibility requires the use of multiple standard software practices and tools, including version control, strong commenting and documentation, and code modularity. Results Building on these standard practices, model sharing sites and tools have been developed that fit into several categories: 1. standardized neural simulators, 2. shared computational resources, 3. declarative model descriptors, ontologies and standardized annotations; 4. model sharing repositories and sharing standards. Conclusion A number of complementary innovations have been proposed to enhance sharing, transparency and reproducibility. The individual user can be encouraged to make use of version control, commenting, documentation and modularity in development of models. The community can help by requiring model sharing as a condition of publication and funding. Significance Model management will become increasingly important as multiscale models become larger, more detailed and correspondingly more difficult to manage by any single investigator or single laboratory. Additional big data management complexity will come as the models become more useful in interpreting experiments, thus increasing the need to ensure clear alignment between modeling data, both parameters and results, and experiment. PMID:27046845

  12. Estimating the reproducibility of psychological science

    NARCIS (Netherlands)

    Aarts, Alexander A.; Anderson, Joanna E.; Anderson, Christopher J.; Attridge, Peter R.; Attwood, Angela; Axt, Jordan; Babel, Molly; Bahnik, Stepan; Baranski, Erica; Barnett-Cowan, Michael; Bartmess, Elizabeth; Beer, Jennifer; Bell, Raoul; Bentley, Heather; Beyan, Leah; Binion, Grace; Borsboom, Denny; Bosch, Annick; Bosco, Frank A.; Bowman, Sara D.; Brandt, Mark J.; Braswell, Erin; Brohmer, Hilmar; Brown, Benjamin T.; Brown, Kristina; Bruening, Jovita; Calhoun-Sauls, Ann; Chagnon, Elizabeth; Callahan, Shannon P.; Chandler, Jesse; Chartier, Christopher R.; Cheung, Felix; Cillessen, Linda; Christopherson, Cody D.; Clay, Russ; Cleary, Hayley; Cloud, Mark D.; Cohn, Michael; Cohoon, Johanna; Columbus, Simon; Cordes, Andreas; Costantini, Giulio; Hartgerink, Chris; Krijnen, Job; Nuijten, Michele B.; van 't Veer, Anna E.; Van Aert, Robbie; van Assen, M.A.L.M.; Wissink, Joeri; Zeelenberg, Marcel

    2015-01-01

    INTRODUCTION Reproducibility is a defining feature of science, but the extent to which it characterizes current research is unknown. Scientific claims should not gain credence because of the status or authority of their originator but by the replicability of their supporting evidence. Even research

  13. Reproducibility, Controllability, and Optimization of Lenr Experiments

    Science.gov (United States)

    Nagel, David J.

    2006-02-01

    Low-energy nuclear reaction (LENR) measurements are significantly and increasingly reproducible. Practical control of the production of energy or materials by LENR has yet to be demonstrated. Minimization of costly inputs and maximization of desired outputs of LENR remain for future developments.

  14. Estimating the reproducibility of psychological science

    NARCIS (Netherlands)

    Anderson, Joanna E.; Aarts, Alexander A.; Anderson, Christopher J.; Attridge, Peter R.; Attwood, Angela; Axt, Jordan; Babel, Molly; Bahník, Štěpán; Baranski, Erica; Barnett-Cowan, Michael; Bartmess, Elizabeth; Beer, Jennifer; Bell, Raoul; Bentley, Heather; Beyan, Leah; Binion, Grace; Borsboom, Denny; Bosch, Annick; Bosco, Frank A.; Bowman, Sara D.; Brandt, Mark J.; Braswell, Erin; Brohmer, Hilmar; Brown, Benjamin T.; Brown, Kristina; Brüning, Jovita; Calhoun-Sauls, Ann; Callahan, Shannon P.; Chagnon, Elizabeth; Chandler, Jesse; Chartier, Christopher R.; Cheung, Felix; Christopherson, Cody D.; Cillessen, Linda; Clay, Russ; Cleary, Hayley; Cloud, Mark D.; Conn, Michael; Cohoon, Johanna; Columbus, Simon; Cordes, Andreas; Costantini, Giulio; Alvarez, Leslie D Cramblet; Cremata, Ed; Crusius, Jan; DeCoster, Jamie; DeGaetano, Michelle A.; Penna, Nicolás Delia; Den Bezemer, Bobby; Deserno, Marie K.; Devitt, Olivia; Dewitte, Laura; Dobolyi, David G.; Dodson, Geneva T.; Donnellan, M. Brent; Donohue, Ryan; Dore, Rebecca A.; Dorrough, Angela; Dreber, Anna; Dugas, Michelle; Dunn, Elizabeth W.; Easey, Kayleigh; Eboigbe, Sylvia; Eggleston, Casey; Embley, Jo; Epskamp, Sacha; Errington, Timothy M.; Estel, Vivien; Farach, Frank J.; Feather, Jenelle; Fedor, Anna; Fernández-Castilla, Belén; Fiedler, Susann; Field, James G.; Fitneva, Stanka A.; Flagan, Taru; Forest, Amanda L.; Forsell, Eskil; Foster, Joshua D.; Frank, Michael C.; Frazier, Rebecca S.; Fuchs, Heather; Gable, Philip; Galak, Jeff; Galliani, Elisa Maria; Gampa, Anup; Garcia, Sara; Gazarian, Douglas; Gilbert, Elizabeth; Giner-Sorolla, Roger; Glöckner, Andreas; Goellner, Lars; Goh, Jin X.; Goldberg, Rebecca; Goodbourn, Patrick T.; Gordon-McKeon, Shauna; Gorges, Bryan; Gorges, Jessie; Goss, Justin; Graham, Jesse; Grange, James A.; Gray, Jeremy; Hartgerink, Chris; Hartshorne, Joshua; Hasselman, Fred; Hayes, Timothy; Heikensten, Emma; Henninger, Felix; Hodsoll, John; Holubar, Taylor; Hoogendoorn, Gea; Humphries, Denise J.; Hung, Cathy O Y; Immelman, Nathali; Irsik, Vanessa C.; Jahn, Georg; Jäkel, Frank; Jekel, Marc; Johannesson, Magnus; Johnson, Larissa G.; Johnson, David J.; Johnson, Kate M.; Johnston, William J.; Jonas, Kai; Joy-Gaba, Jennifer A.; Kappes, Heather Barry; Kelso, Kim; Kidwell, Mallory C.; Kim, Seung Kyung; Kirkhart, Matthew; Kleinberg, Bennett; Knežević, Goran; Kolorz, Franziska Maria; Kossakowski, Jolanda J.; Krause, Robert Wilhelm; Krijnen, Job; Kuhlmann, Tim; Kunkels, Yoram K.; Kyc, Megan M.; Lai, Calvin K.; Laique, Aamir; Lakens, Daniël|info:eu-repo/dai/nl/298811855; Lane, Kristin A.; Lassetter, Bethany; Lazarević, Ljiljana B.; Le Bel, Etienne P.; Lee, Key Jung; Lee, Minha; Lemm, Kristi; Levitan, Carmel A.; Lewis, Melissa; Lin, Lin; Lin, Stephanie; Lippold, Matthias; Loureiro, Darren; Luteijn, Ilse; MacKinnon, Sean; Mainard, Heather N.; Marigold, Denise C.; Martin, Daniel P.; Martinez, Tylar; Masicampo, E. J.; Matacotta, Josh; Mathur, Maya; May, Michael; Mechin, Nicole; Mehta, Pranjal; Meixner, Johannes; Melinger, Alissa; Miller, Jeremy K.; Miller, Mallorie; Moore, Katherine; Möschl, Marcus; Motyl, Matt; Müller, Stephanie M.; Munafo, Marcus; Neijenhuijs, Koen I.; Nervi, Taylor; Nicolas, Gandalf; Nilsonne, Gustav; Nosek, Brian A.; Nuijten, Michèle B.; Olsson, Catherine; Osborne, Colleen; Ostkamp, Lutz; Pavel, Misha; Penton-Voak, Ian S.; Perna, Olivia; Pernet, Cyril; Perugini, Marco; Pipitone, R. Nathan; Pitts, Michael; Plessow, Franziska; Prenoveau, Jason M.; Rahal, Rima Maria; Ratliff, Kate A.; Reinhard, David; Renkewitz, Frank; Ricker, Ashley A.; Rigney, Anastasia; Rivers, Andrew M.; Roebke, Mark; Rutchick, Abraham M.; Ryan, Robert S.; Sahin, Onur; Saide, Anondah; Sandstrom, Gillian M.; Santos, David; Saxe, Rebecca; Schlegelmilch, René; Schmidt, Kathleen; Scholz, Sabine; Seibel, Larissa; Selterman, Dylan Faulkner; Shaki, Samuel; Simpson, William B.; Sinclair, H. Colleen; Skorinko, Jeanine L M; Slowik, Agnieszka; Snyder, Joel S.; Soderberg, Courtney; Sonnleitner, Carina; Spencer, Nick; Spies, Jeffrey R.; Steegen, Sara; Stieger, Stefan; Strohminger, Nina; Sullivan, Gavin B.; Talhelm, Thomas; Tapia, Megan; Te Dorsthorst, Anniek; Thomae, Manuela; Thomas, Sarah L.; Tio, Pia; Traets, Frits; Tsang, Steve; Tuerlinckx, Francis; Turchan, Paul; Valášek, Milan; Van't Veer, Anna E.; Van Aert, Robbie; Van Assen, Marcel|info:eu-repo/dai/nl/407629971; Van Bork, Riet; Van De Ven, Mathijs; Van Den Bergh, Don; Van Der Hulst, Marije; Van Dooren, Roel; Van Doorn, Johnny; Van Renswoude, Daan R.; Van Rijn, Hedderik; Vanpaemel, Wolf; Echeverría, Alejandro Vásquez; Vazquez, Melissa; Velez, Natalia; Vermue, Marieke; Verschoor, Mark; Vianello, Michelangelo; Voracek, Martin; Vuu, Gina; Wagenmakers, Eric Jan; Weerdmeester, Joanneke; Welsh, Ashlee; Westgate, Erin C.; Wissink, Joeri; Wood, Michael; Woods, Andy; Wright, Emily; Wu, Sining; Zeelenberg, Marcel; Zuni, Kellylynn

    2015-01-01

    Reproducibility is a defining feature of science, but the extent to which it characterizes current research is unknown. We conducted replications of 100 experimental and correlational studies published in three psychology journals using high-powered designs and original materials when available.

  15. Lattice gas simulations of dynamical geometry in one dimension.

    Science.gov (United States)

    Love, Peter J; Boghosian, Bruce M; Meyer, David A

    2004-08-15

    We present numerical results obtained using a lattice gas model with dynamical geometry. The (irreversible) macroscopic behaviour of the geometry (size) of the lattice is discussed in terms of a simple scaling theory and obtained numerically. The emergence of irreversible behaviour from the reversible microscopic lattice gas rules is discussed in terms of the constraint that the macroscopic evolution be reproducible. The average size of the lattice exhibits power-law growth with exponent at late times. The deviation of the macroscopic behaviour from reproducibility for particular initial conditions ('rogue states') is investigated as a function of system size. The number of such 'rogue states' is observed to decrease with increasing system size. Two mean-field analyses of the macroscopic behaviour are also presented. Copyright 2004 The Royal Society

  16. ITK: Enabling Reproducible Research and Open Science

    Directory of Open Access Journals (Sweden)

    Matthew Michael McCormick

    2014-02-01

    Full Text Available Reproducibility verification is essential to the practice of the scientific method. Researchers report their findings, which are strengthened as other independent groups in the scientific community share similar outcomes. In the many scientific fields where software has become a fundamental tool for capturing and analyzing data, this requirement of reproducibility implies that reliable and comprehensive software platforms and tools should be made available to the scientific community. The tools will empower them and the public to verify, through practice, the reproducibility of observations that are reported in the scientific literature.Medical image analysis is one of the fields in which the use of computational resources, both software and hardware, are an essential platform for performing experimental work. In this arena, the introduction of the Insight Toolkit (ITK in 1999 has transformed the field and facilitates its progress by accelerating the rate at which algorithmic implementations are developed, tested, disseminated and improved. By building on the efficiency and quality of open source methodologies, ITK has provided the medical image community with an effective platform on which to build a daily workflow that incorporates the true scientific practices of reproducibility verification.This article describes the multiple tools, methodologies, and practices that the ITK community has adopted, refined, and followed during the past decade, in order to become one of the research communities with the most modern reproducibility verification infrastructure. For example, 207 contributors have created over 2400 unit tests that provide over 84% code line test coverage. The Insight Journal, an open publication journal associated with the toolkit, has seen over 360,000 publication downloads. The median normalized closeness centrality, a measure of knowledge flow, resulting from the distributed peer code review system was high, 0.46.

  17. A PHYSICAL ACTIVITY QUESTIONNAIRE: REPRODUCIBILITY AND VALIDITY

    Directory of Open Access Journals (Sweden)

    Nicolas Barbosa

    2007-12-01

    Full Text Available This study evaluates the Quantification de L'Activite Physique en Altitude chez les Enfants (QAPACE supervised self-administered questionnaire reproducibility and validity on the estimation of the mean daily energy expenditure (DEE on Bogotá's schoolchildren. The comprehension was assessed on 324 students, whereas the reproducibility was studied on a different random sample of 162 who were exposed twice to it. Reproducibility was assessed using both the Bland-Altman plot and the intra-class correlation coefficient (ICC. The validity was studied in a sample of 18 girls and 18 boys randomly selected, which completed the test - re-test study. The DEE derived from the questionnaire was compared with the laboratory measurement results of the peak oxygen uptake (Peak VO2 from ergo-spirometry and Leger Test. The reproducibility ICC was 0.96 (95% C.I. 0.95-0.97; by age categories 8-10, 0.94 (0.89-0. 97; 11-13, 0.98 (0.96- 0.99; 14-16, 0.95 (0.91-0.98. The ICC between mean TEE as estimated by the questionnaire and the direct and indirect Peak VO2 was 0.76 (0.66 (p<0.01; by age categories, 8-10, 11-13, and 14-16 were 0.89 (0.87, 0.76 (0.78 and 0.88 (0.80 respectively. The QAPACE questionnaire is reproducible and valid for estimating PA and showed a high correlation with the Peak VO2 uptake

  18. On organizing principles of discrete differential geometry. Geometry of spheres

    International Nuclear Information System (INIS)

    Bobenko, Alexander I; Suris, Yury B

    2007-01-01

    Discrete differential geometry aims to develop discrete equivalents of the geometric notions and methods of classical differential geometry. This survey contains a discussion of the following two fundamental discretization principles: the transformation group principle (smooth geometric objects and their discretizations are invariant with respect to the same transformation group) and the consistency principle (discretizations of smooth parametrized geometries can be extended to multidimensional consistent nets). The main concrete geometric problem treated here is discretization of curvature-line parametrized surfaces in Lie geometry. Systematic use of the discretization principles leads to a discretization of curvature-line parametrization which unifies circular and conical nets.

  19. Higher geometry an introduction to advanced methods in analytic geometry

    CERN Document Server

    Woods, Frederick S

    2005-01-01

    For students of mathematics with a sound background in analytic geometry and some knowledge of determinants, this volume has long been among the best available expositions of advanced work on projective and algebraic geometry. Developed from Professor Woods' lectures at the Massachusetts Institute of Technology, it bridges the gap between intermediate studies in the field and highly specialized works.With exceptional thoroughness, it presents the most important general concepts and methods of advanced algebraic geometry (as distinguished from differential geometry). It offers a thorough study

  20. RefleX: X-ray absorption and reflection in active galactic nuclei for arbitrary geometries

    Science.gov (United States)

    Paltani, S.; Ricci, C.

    2017-11-01

    Reprocessed X-ray radiation carries important information about the structure and physical characteristics of the material surrounding the supermassive black hole (SMBH) in active galactic nuclei (AGN). We report here on a newly developed simulation platform, RefleX, which allows to reproduce absorption and reflection by quasi-arbitrary geometries. We show here the reliability of our approach by comparing the results of our simulations with existing spectral models such as pexrav, MYTorus and BNTorus. RefleX implements both Compton scattering on free electrons and Rayleigh scattering and Compton scattering on bound electrons. We show the effect of bound-electron corrections on a torus geometry simulated like in MYTorus. We release with this paper the RefleX executable, as well as RXTorus, a model that assumes absorption and reflection from a torus with a varying ratio of the minor to major axis of the torus. To allow major flexibility RXTorus is also distributed in three components: absorbed primary emission, scattered radiation and fluorescent lines. RXTorus is provided for different values of the abundance, and with (atomic configuration) or without (free-electron configuration) taking into account Rayleigh scattering and bound electrons. We apply the RXTorus model in both configurations on the XMM-Newton and NuSTAR spectrum of the Compton-thick AGN NGC 424 and find that the models are able to reproduce very well the observations, but that the assumption on the bound or free state of the electrons has significant consequences on the fit parameters. RefleX executable, user manual and example models are available at http://www.astro.unige.ch/reflex. A copy of the RefleX executable is also available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/607/A31

  1. An introduction to incidence geometry

    CERN Document Server

    De Bruyn, Bart

    2016-01-01

    This book gives an introduction to the field of Incidence Geometry by discussing the basic families of point-line geometries and introducing some of the mathematical techniques that are essential for their study. The families of geometries covered in this book include among others the generalized polygons, near polygons, polar spaces, dual polar spaces and designs. Also the various relationships between these geometries are investigated. Ovals and ovoids of projective spaces are studied and some applications to particular geometries will be given. A separate chapter introduces the necessary mathematical tools and techniques from graph theory. This chapter itself can be regarded as a self-contained introduction to strongly regular and distance-regular graphs. This book is essentially self-contained, only assuming the knowledge of basic notions from (linear) algebra and projective and affine geometry. Almost all theorems are accompanied with proofs and a list of exercises with full solutions is given at the end...

  2. Does systematic variation improve the reproducibility of animal experiments?

    NARCIS (Netherlands)

    Jonker, R.M.; Guenther, A.; Engqvist, L.; Schmoll, T.

    2013-01-01

    Reproducibility of results is a fundamental tenet of science. In this journal, Richter et al.1 tested whether systematic variation in experimental conditions (heterogenization) affects the reproducibility of results. Comparing this approach with the current standard of ensuring reproducibility

  3. Casimir forces and geometry

    International Nuclear Information System (INIS)

    Buescher, R.

    2005-01-01

    Casimir interactions are interactions induced by quantum vacuum fluctuations and thermal fluctuations of the electromagnetic field. Using a path integral quantization for the gauge field, an effective Gaussian action will be derived which is the starting point to compute Casimir forces between macroscopic objects analytically and numerically. No assumptions about the independence of the material and shape dependent contributions to the interaction are made. We study the limit of flat surfaces in further detail and obtain a concise derivation of Lifshitz' theory of molecular forces. For the case of ideally conducting boundaries, the Gaussian action will be calculated explicitly. Both limiting cases are also discussed within the framework of a scalar field quantization approach, which is applicable for translationally invariant geometries. We develop a non-perturbative approach to calculate the Casimir interaction from the Gaussian action for periodically deformed and ideally conducting objects numerically. The obtained results reveal two different scaling regimes for the Casimir force as a function of the distance between the objects, their deformation wavelength and -amplitude. The results confirm that the interaction is non-additive, especially in the presence of strong geometric deformations. Furthermore, the numerical approach is extended to calculate lateral Casimir forces. The results are consistent with the results of the proximity-force approximation for large deformation wavelengths. A qualitatively different behaviour between the normal and lateral force is revealed. We also establish a relation between the boundary induced change of the of the density of states for the scalar Helmholtz equation and the Casimir interaction using the path integral method. For statically deformed boundaries, this relation can be expressed as a novel trace formula, which is formally similar to the so-called Krein-Friedel-Lloyd formula. While the latter formula describes the

  4. Planetary Image Geometry Library

    Science.gov (United States)

    Deen, Robert C.; Pariser, Oleg

    2010-01-01

    The Planetary Image Geometry (PIG) library is a multi-mission library used for projecting images (EDRs, or Experiment Data Records) and managing their geometry for in-situ missions. A collection of models describes cameras and their articulation, allowing application programs such as mosaickers, terrain generators, and pointing correction tools to be written in a multi-mission manner, without any knowledge of parameters specific to the supported missions. Camera model objects allow transformation of image coordinates to and from view vectors in XYZ space. Pointing models, specific to each mission, describe how to orient the camera models based on telemetry or other information. Surface models describe the surface in general terms. Coordinate system objects manage the various coordinate systems involved in most missions. File objects manage access to metadata (labels, including telemetry information) in the input EDRs and RDRs (Reduced Data Records). Label models manage metadata information in output files. Site objects keep track of different locations where the spacecraft might be at a given time. Radiometry models allow correction of radiometry for an image. Mission objects contain basic mission parameters. Pointing adjustment ("nav") files allow pointing to be corrected. The object-oriented structure (C++) makes it easy to subclass just the pieces of the library that are truly mission-specific. Typically, this involves just the pointing model and coordinate systems, and parts of the file model. Once the library was developed (initially for Mars Polar Lander, MPL), adding new missions ranged from two days to a few months, resulting in significant cost savings as compared to rewriting all the application programs for each mission. Currently supported missions include Mars Pathfinder (MPF), MPL, Mars Exploration Rover (MER), Phoenix, and Mars Science Lab (MSL). Applications based on this library create the majority of operational image RDRs for those missions. A

  5. Initiation to global Finslerian geometry

    CERN Document Server

    Akbar-Zadeh, Hassan

    2006-01-01

    After a brief description of the evolution of thinking on Finslerian geometry starting from Riemann, Finsler, Berwald and Elie Cartan, the book gives a clear and precise treatment of this geometry. The first three chapters develop the basic notions and methods, introduced by the author, to reach the global problems in Finslerian Geometry. The next five chapters are independent of each other, and deal with among others the geometry of generalized Einstein manifolds, the classification of Finslerian manifolds of constant sectional curvatures. They also give a treatment of isometric, affine, p

  6. Ostrich eggs geometry

    Directory of Open Access Journals (Sweden)

    Šárka Nedomová

    2013-01-01

    Full Text Available Precise quantification of the profile of egg can provide a powerful tool for the analysis of egg shape for various biological problems. A new approach to the geometry of a Ostrich’s egg profile is presented here using an analysing the egg’s digital photo by edge detection techniques. The obtained points on the eggshell counter are fitted by the Fourier series. The obtained equations describing an egg profile have been used to calculate radii of curvature. The radii of the curvature at the important point of the egg profile (sharp end, blunt end and maximum thickness are independent on the egg shape index. The exact values of the egg surface and the egg volume have been obtained. These quantities are also independent on the egg shape index. These quantities can be successively estimated on the basis of simplified equations which are expressed in terms of the egg length, L¸ and its width, B. The surface area of the eggshells also exhibits good correlation with the egg long circumference length. Some limitations of the most used procedures have been also shown.

  7. Nonperturbative quantum geometries

    International Nuclear Information System (INIS)

    Jacobson, T.; California Univ., Santa Barbara; Smolin, L.; California Univ., Santa Barbara

    1988-01-01

    Using the self-dual representation of quantum general relativity, based on Ashtekar's new phase space variables, we present an infinite dimensional family of quantum states of the gravitational field which are exactly annihilated by the hamiltonian constraint. These states are constructed from Wilson loops for Ashtekar's connection (which is the spatial part of the left handed spin connection). We propose a new regularization procedure which allows us to evaluate the action of the hamiltonian constraint on these states. Infinite linear combinations of these states which are formally annihilated by the diffeomorphism constraints as well are also described. These are explicit examples of physical states of the gravitational field - and for the compact case are exact zero eigenstates of the hamiltonian of quantum general relativity. Several different approaches to constructing diffeomorphism invariant states in the self dual representation are also described. The physical interpretation of the states described here is discussed. However, as we do not yet know the physical inner product, any interpretation is at this stage speculative. Nevertheless, this work suggests that quantum geometry at Planck scales might be much simpler when explored in terms of the parallel transport of left-handed spinors than when explored in terms of the three metric. (orig.)

  8. Matrix Information Geometry

    CERN Document Server

    Bhatia, Rajendra

    2013-01-01

    This book is an outcome of the Indo-French Workshop on Matrix Information Geometries (MIG): Applications in Sensor and Cognitive Systems Engineering, which was held in Ecole Polytechnique and Thales Research and Technology Center, Palaiseau, France, in February 23-25, 2011. The workshop was generously funded by the Indo-French Centre for the Promotion of Advanced Research (IFCPAR).  During the event, 22 renowned invited french or indian speakers gave lectures on their areas of expertise within the field of matrix analysis or processing. From these talks, a total of 17 original contribution or state-of-the-art chapters have been assembled in this volume. All articles were thoroughly peer-reviewed and improved, according to the suggestions of the international referees. The 17 contributions presented  are organized in three parts: (1) State-of-the-art surveys & original matrix theory work, (2) Advanced matrix theory for radar processing, and (3) Matrix-based signal processing applications.  

  9. Inter-examiner reproducibility of tests for lumbar motor control

    Directory of Open Access Journals (Sweden)

    Elkjaer Arne

    2011-05-01

    Full Text Available Abstract Background Many studies show a relation between reduced lumbar motor control (LMC and low back pain (LBP. However, test circumstances vary and during test performance, subjects may change position. In other words, the reliability - i.e. reproducibility and validity - of tests for LMC should be based on quantitative data. This has not been considered before. The aim was to analyse the reproducibility of five different quantitative tests for LMC commonly used in daily clinical practice. Methods The five tests for LMC were: repositioning (RPS, sitting forward lean (SFL, sitting knee extension (SKE, and bent knee fall out (BKFO, all measured in cm, and leg lowering (LL, measured in mm Hg. A total of 40 subjects (14 males, 26 females 25 with and 15 without LBP, with a mean age of 46.5 years (SD 14.8, were examined independently and in random order by two examiners on the same day. LBP subjects were recruited from three physiotherapy clinics with a connection to the clinic's gym or back-school. Non-LBP subjects were recruited from the clinic's staff acquaintances, and from patients without LBP. Results The means and standard deviations for each of the tests were 0.36 (0.27 cm for RPS, 1.01 (0.62 cm for SFL, 0.40 (0.29 cm for SKE, 1.07 (0.52 cm for BKFO, and 32.9 (7.1 mm Hg for LL. All five tests for LMC had reproducibility with the following ICCs: 0.90 for RPS, 0.96 for SFL, 0.96 for SKE, 0.94 for BKFO, and 0.98 for LL. Bland and Altman plots showed that most of the differences between examiners A and B were less than 0.20 cm. Conclusion These five tests for LMC displayed excellent reproducibility. However, the diagnostic accuracy of these tests needs to be addressed in larger cohorts of subjects, establishing values for the normal population. Also cut-points between subjects with and without LBP must be determined, taking into account age, level of activity, degree of impairment and participation in sports. Whether reproducibility of these

  10. Reproducibility of the chamber scarification test

    DEFF Research Database (Denmark)

    Andersen, Klaus Ejner

    1996-01-01

    The chamber scarification test is a predictive human skin irritation test developed to rank the irritation potential of products and ingredients meant for repeated use on normal and diseased skin. 12 products or ingredients can be tested simultaneously on the forearm skin of each volunteer....... The test combines with the procedure scratching of the skin at each test site and subsequent closed patch tests with the products, repeated daily for 3 days. The test is performed on groups of human volunteers: a skin irritant substance or products is included in each test as a positive control...... high reproducibility of the test. Further, intra-individual variation in skin reaction to the 2 control products in 26 volunteers, who participated 2x, is shown, which supports the conclusion that the chamber scarification test is a useful short-term human skin irritation test with high reproducibility....

  11. Additive Manufacturing: Reproducibility of Metallic Parts

    Directory of Open Access Journals (Sweden)

    Konda Gokuldoss Prashanth

    2017-02-01

    Full Text Available The present study deals with the properties of five different metals/alloys (Al-12Si, Cu-10Sn and 316L—face centered cubic structure, CoCrMo and commercially pure Ti (CP-Ti—hexagonal closed packed structure fabricated by selective laser melting. The room temperature tensile properties of Al-12Si samples show good consistency in results within the experimental errors. Similar reproducible results were observed for sliding wear and corrosion experiments. The other metal/alloy systems also show repeatable tensile properties, with the tensile curves overlapping until the yield point. The curves may then follow the same path or show a marginal deviation (~10 MPa until they reach the ultimate tensile strength and a negligible difference in ductility levels (of ~0.3% is observed between the samples. The results show that selective laser melting is a reliable fabrication method to produce metallic materials with consistent and reproducible properties.

  12. Reproducibility in cyclostratigraphy: initiating an intercomparison project

    Science.gov (United States)

    Sinnesael, Matthias; De Vleeschouwer, David; Zeeden, Christian; Claeys, Philippe

    2017-04-01

    The study of astronomical climate forcing and the application of cyclostratigraphy have experienced a spectacular growth over the last decades. In the field of cyclostratigraphy a broad range in methodological approaches exist. However, comparative study between the different approaches is lacking. Different cases demand different approaches, but with the growing importance of the field, questions arise about reproducibility, uncertainties and standardization of results. The radioisotopic dating community, in particular, has done far-reaching efforts to improve reproducibility and intercomparison of radioisotopic dates and their errors. To satisfy this need in cyclostratigraphy, we initiate a comparable framework for the community. The aims are to investigate and quantify reproducibility of, and uncertainties related to cyclostratigraphic studies and to provide a platform to discuss the merits and pitfalls of different methodologies, and their applicabilities. With this poster, we ask the feedback from the community on how to design this comparative framework in a useful, meaningful and productive manner. In parallel, we would like to discuss how reproducibility should be tested and what uncertainties should stand for in cyclostratigraphy. On the other hand, we intend to trigger interest for a cyclostratigraphic intercomparison project. This intercomparison project would imply the analysis of artificial and genuine geological records by individual researchers. All participants would be free to determine their method of choice. However, a handful of criterions will be required for an outcome to be comparable. The different results would be compared (e.g. during a workshop or a special session), and the lessons learned from the comparison could potentially be reported in a review paper. The aim of an intercomparison project is not to rank the different methods according to their merits, but to get insight into which specific methods are most suitable for which

  13. A how to guide to reproducible research

    OpenAIRE

    Whitaker, Kirstie

    2018-01-01

    This talk will discuss the perceived and actual barriers experienced by researchers attempting to do reproducible research, and give practical guidance on how they can be overcome. It will include suggestions on how to make your code and data available and usable for others (including a strong suggestion to document both clearly so you don't have to reply to lots of email questions from future users). Specifically it will include a brief guide to version control, collaboration and disseminati...

  14. Bad Behavior: Improving Reproducibility in Behavior Testing.

    Science.gov (United States)

    Andrews, Anne M; Cheng, Xinyi; Altieri, Stefanie C; Yang, Hongyan

    2018-01-24

    Systems neuroscience research is increasingly possible through the use of integrated molecular and circuit-level analyses. These studies depend on the use of animal models and, in many cases, molecular and circuit-level analyses. Associated with genetic, pharmacologic, epigenetic, and other types of environmental manipulations. We illustrate typical pitfalls resulting from poor validation of behavior tests. We describe experimental designs and enumerate controls needed to improve reproducibility in investigating and reporting of behavioral phenotypes.

  15. Numerical optimization of alignment reproducibility for customizable surgical guides.

    Science.gov (United States)

    Kroes, Thomas; Valstar, Edward; Eisemann, Elmar

    2015-10-01

    Computer-assisted orthopedic surgery aims at minimizing invasiveness, postoperative pain, and morbidity with computer-assisted preoperative planning and intra-operative guidance techniques, of which camera-based navigation and patient-specific templates (PST) are the most common. PSTs are one-time templates that guide the surgeon initially in cutting slits or drilling holes. This method can be extended to reusable and customizable surgical guides (CSG), which can be adapted to the patients' bone. Determining the right set of CSG input parameters by hand is a challenging task, given the vast amount of input parameter combinations and the complex physical interaction between the PST/CSG and the bone. This paper introduces a novel algorithm to solve the problem of choosing the right set of input parameters. Our approach predicts how well a CSG instance is able to reproduce the planned alignment based on a physical simulation and uses a genetic optimization algorithm to determine optimal configurations. We validate our technique with a prototype of a pin-based CSG and nine rapid prototyped distal femora. The proposed optimization technique has been compared to manual optimization by experts, as well as participants with domain experience. Using the optimization technique, the alignment errors remained within practical boundaries of 1.2 mm translation and [Formula: see text] rotation error. In all cases, the proposed method outperformed manual optimization. Manually optimizing CSG parameters turns out to be a counterintuitive task. Even after training, subjects with and without anatomical background fail in choosing appropriate CSG configurations. Our optimization algorithm ensures that the CSG is configured correctly, and we could demonstrate that the intended alignment of the CSG is accurately reproduced on all tested bone geometries.

  16. varying elastic parameters distributions

    KAUST Repository

    Moussawi, Ali

    2014-12-01

    The experimental identication of mechanical properties is crucial in mechanics for understanding material behavior and for the development of numerical models. Classical identi cation procedures employ standard shaped specimens, assume that the mechanical elds in the object are homogeneous, and recover global properties. Thus, multiple tests are required for full characterization of a heterogeneous object, leading to a time consuming and costly process. The development of non-contact, full- eld measurement techniques from which complex kinematic elds can be recorded has opened the door to a new way of thinking. From the identi cation point of view, suitable methods can be used to process these complex kinematic elds in order to recover multiple spatially varying parameters through one test or a few tests. The requirement is the development of identi cation techniques that can process these complex experimental data. This thesis introduces a novel identi cation technique called the constitutive compatibility method. The key idea is to de ne stresses as compatible with the observed kinematic eld through the chosen class of constitutive equation, making possible the uncoupling of the identi cation of stress from the identi cation of the material parameters. This uncoupling leads to parametrized solutions in cases where 5 the solution is non-unique (due to unknown traction boundary conditions) as demonstrated on 2D numerical examples. First the theory is outlined and the method is demonstrated in 2D applications. Second, the method is implemented within a domain decomposition framework in order to reduce the cost for processing very large problems. Finally, it is extended to 3D numerical examples. Promising results are shown for 2D and 3D problems.

  17. A Framework for Reproducible Latent Fingerprint Enhancements.

    Science.gov (United States)

    Carasso, Alfred S

    2014-01-01

    Photoshop processing of latent fingerprints is the preferred methodology among law enforcement forensic experts, but that appproach is not fully reproducible and may lead to questionable enhancements. Alternative, independent, fully reproducible enhancements, using IDL Histogram Equalization and IDL Adaptive Histogram Equalization, can produce better-defined ridge structures, along with considerable background information. Applying a systematic slow motion smoothing procedure to such IDL enhancements, based on the rapid FFT solution of a Lévy stable fractional diffusion equation, can attenuate background detail while preserving ridge information. The resulting smoothed latent print enhancements are comparable to, but distinct from, forensic Photoshop images suitable for input into automated fingerprint identification systems, (AFIS). In addition, this progressive smoothing procedure can be reexamined by displaying the suite of progressively smoother IDL images. That suite can be stored, providing an audit trail that allows monitoring for possible loss of useful information, in transit to the user-selected optimal image. Such independent and fully reproducible enhancements provide a valuable frame of reference that may be helpful in informing, complementing, and possibly validating the forensic Photoshop methodology.

  18. GPS: Geometry, Probability, and Statistics

    Science.gov (United States)

    Field, Mike

    2012-01-01

    It might be said that for most occupations there is now less of a need for mathematics than there was say fifty years ago. But, the author argues, geometry, probability, and statistics constitute essential knowledge for everyone. Maybe not the geometry of Euclid, but certainly geometrical ways of thinking that might enable us to describe the world…

  19. Surrogate Modeling for Geometry Optimization

    DEFF Research Database (Denmark)

    Rojas Larrazabal, Marielba de la Caridad; Abraham, Yonas; Holzwarth, Natalie

    2009-01-01

    A new approach for optimizing the nuclear geometry of an atomic system is described. Instead of the original expensive objective function (energy functional), a small number of simpler surrogates is used.......A new approach for optimizing the nuclear geometry of an atomic system is described. Instead of the original expensive objective function (energy functional), a small number of simpler surrogates is used....

  20. Kaehler geometry and SUSY mechanics

    International Nuclear Information System (INIS)

    Bellucci, Stefano; Nersessian, Armen

    2001-01-01

    We present two examples of SUSY mechanics related with Kaehler geometry. The first system is the N = 4 supersymmetric one-dimensional sigma-model proposed in hep-th/0101065. Another system is the N = 2 SUSY mechanics whose phase space is the external algebra of an arbitrary Kaehler manifold. The relation of these models with antisymplectic geometry is discussed

  1. A prediction for bubbling geometries

    OpenAIRE

    Okuda, Takuya

    2007-01-01

    We study the supersymmetric circular Wilson loops in N=4 Yang-Mills theory. Their vacuum expectation values are computed in the parameter region that admits smooth bubbling geometry duals. The results are a prediction for the supergravity action evaluated on the bubbling geometries for Wilson loops.

  2. Molecular motion in restricted geometries

    Indian Academy of Sciences (India)

    Molecular dynamics in restricted geometries is known to exhibit anomalous behaviour. Diffusion, translational or rotational, of molecules is altered significantly on confinement in restricted geometries. Quasielastic neutron scattering (QENS) offers a unique possibility of studying molecular motion in such systems. Both time ...

  3. Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE

    OpenAIRE

    James, Doug; Wilkins-Diehr, Nancy; Stodden, Victoria; Colbry, Dirk; Rosales, Carlos; Fahey, Mark; Shi, Justin; Silva, Rafael F.; Lee, Kyo; Roskies, Ralph; Loewe, Laurence; Lindsey, Susan; Kooper, Rob; Barba, Lorena; Bailey, David

    2014-01-01

    This is the final report on reproducibility@xsede, a one-day workshop held in conjunction with XSEDE14, the annual conference of the Extreme Science and Engineering Discovery Environment (XSEDE). The workshop's discussion-oriented agenda focused on reproducibility in large-scale computational research. Two important themes capture the spirit of the workshop submissions and discussions: (1) organizational stakeholders, especially supercomputer centers, are in a unique position to promote, enab...

  4. Basic algebraic geometry, v.2

    CERN Document Server

    Shafarevich, Igor Rostislavovich

    1994-01-01

    Shafarevich Basic Algebraic Geometry 2 The second edition of Shafarevich's introduction to algebraic geometry is in two volumes. The second volume covers schemes and complex manifolds, generalisations in two different directions of the affine and projective varieties that form the material of the first volume. Two notable additions in this second edition are the section on moduli spaces and representable functors, motivated by a discussion of the Hilbert scheme, and the section on Kähler geometry. The book ends with a historical sketch discussing the origins of algebraic geometry. From the Zentralblatt review of this volume: "... one can only respectfully repeat what has been said about the first part of the book (...): a great textbook, written by one of the leading algebraic geometers and teachers himself, has been reworked and updated. As a result the author's standard textbook on algebraic geometry has become even more important and valuable. Students, teachers, and active researchers using methods of al...

  5. Optical geometry across the horizon

    International Nuclear Information System (INIS)

    Jonsson, Rickard

    2006-01-01

    In a recent paper (Jonsson and Westman 2006 Class. Quantum Grav. 23 61), a generalization of optical geometry, assuming a non-shearing reference congruence, is discussed. Here we illustrate that this formalism can be applied to (a finite four-volume) of any spherically symmetric spacetime. In particular we apply the formalism, using a non-static reference congruence, to do optical geometry across the horizon of a static black hole. While the resulting geometry in principle is time dependent, we can choose the reference congruence in such a manner that an embedding of the geometry always looks the same. Relative to the embedded geometry the reference points are then moving. We discuss the motion of photons, inertial forces and gyroscope precession in this framework

  6. Geometry and physics of branes

    International Nuclear Information System (INIS)

    Gal'tsov, D V

    2003-01-01

    The book brings together the contents of lecture courses delivered at the school 'Geometry and Physics of Branes' which took place at the Center 'Alessandro Volta' (Como, Italy) in the spring of 2001. The purpose of the school was to provide an introduction to some lines of research, related to the notion of branes in superstring theory, which are in the focus of attention both in the physical and mathematical communities. The book is structured into three parts: the first contains an elementary introduction to branes, the second is devoted to physical aspects (conformal field theory on open and unoriented surfaces and topics in string tachyon dynamics), and the last contains some more formal mathematical developments. An introduction to branes is given in a remarkably lucid contribution by A Lerda. It opens with a construction of p-brane solutions in classical IIA and IIB supergravities with particular emphasis on the 'fundamental string' solution, the NS5-brane and the D3-brane. Then, the quantum description of D-branes is discussed in terms of boundary states of the closed superstring, which is an alternative to the more common description in terms of open strings with Dirichlet boundary conditions in the transverse to the brane directions. When a constant gauge field is present in the D-brane worldvolume, the boundary states are coherent states of the string oscillators depending on the field strength tensor. The couplings of the brane to the bulk fields - the graviton, the dilaton, and the Kalb-Ramond fields - are then extracted and shown to be precisely the ones that are produced by the Dirac-Born-Infeld action governing the low-energy dynamics of the D-brane derived using the open strings formalism. It is also shown that in the classical limit, the boundary states correctly reproduce the parameters of the corresponding classical solutions. The second part of the book starts with a contribution by Y S Stanev devoted to the two-dimensional conformal field

  7. Size Control of Sessile Microbubbles for Reproducibly Driven Acoustic Streaming

    Science.gov (United States)

    Volk, Andreas; Kähler, Christian J.

    2018-05-01

    Acoustically actuated bubbles are receiving growing interest in microfluidic applications, as they induce a streaming field that can be used for particle sorting and fluid mixing. An essential but often unspoken challenge in such applications is to maintain a constant bubble size to achieve reproducible conditions. We present an automatized system for the size control of a cylindrical bubble that is formed at a blind side pit of a polydimethylsiloxane microchannel. Using a pressure control system, we adapt the protrusion depth of the bubble into the microchannel to a precision of approximately 0.5 μ m on a timescale of seconds. By comparing the streaming field generated by bubbles of width 80 μ m with a protrusion depth between -12 and 60 μ m , we find that the mean velocity of the induced streaming fields varies by more than a factor of 4. We also find a qualitative change of the topology of the streaming field. Both observations confirm the importance of the bubble size control system in order to achieve reproducible and reliable bubble-driven streaming experiments.

  8. Convergence of macrostates under reproducible processes

    International Nuclear Information System (INIS)

    Rau, Jochen

    2010-01-01

    I show that whenever a system undergoes a reproducible macroscopic process the mutual distinguishability of macrostates, as measured by their relative entropy, diminishes. This extends the second law which regards only ordinary entropies, and hence only the distinguishability between macrostates and one specific reference state (equidistribution). The new result holds regardless of whether the process is linear or nonlinear. Its proof hinges on the monotonicity of quantum relative entropy under arbitrary coarse grainings, even those that cannot be represented by trace-preserving completely positive maps.

  9. Open and reproducible global land use classification

    Science.gov (United States)

    Nüst, Daniel; Václavík, Tomáš; Pross, Benjamin

    2015-04-01

    Researchers led by the Helmholtz Centre for Environmental research (UFZ) developed a new world map of land use systems based on over 30 diverse indicators (http://geoportal.glues.geo.tu-dresden.de/stories/landsystemarchetypes.html) of land use intensity, climate and environmental and socioeconomic factors. They identified twelve land system archetypes (LSA) using a data-driven classification algorithm (self-organizing maps) to assess global impacts of land use on the environment, and found unexpected similarities across global regions. We present how the algorithm behind this analysis can be published as an executable web process using 52°North WPS4R (https://wiki.52north.org/bin/view/Geostatistics/WPS4R) within the GLUES project (http://modul-a.nachhaltiges-landmanagement.de/en/scientific-coordination-glues/). WPS4R is an open source collaboration platform for researchers, analysts and software developers to publish R scripts (http://www.r-project.org/) as a geo-enabled OGC Web Processing Service (WPS) process. The interoperable interface to call the geoprocess allows both reproducibility of the analysis and integration of user data without knowledge about web services or classification algorithms. The open platform allows everybody to replicate the analysis in their own environments. The LSA WPS process has several input parameters, which can be changed via a simple web interface. The input parameters are used to configure both the WPS environment and the LSA algorithm itself. The encapsulation as a web process allows integration of non-public datasets, while at the same time the publication requires a well-defined documentation of the analysis. We demonstrate this platform specifically to domain scientists and show how reproducibility and open source publication of analyses can be enhanced. We also discuss future extensions of the reproducible land use classification, such as the possibility for users to enter their own areas of interest to the system and

  10. Complex analysis and CR geometry

    CERN Document Server

    Zampieri, Giuseppe

    2008-01-01

    Cauchy-Riemann (CR) geometry is the study of manifolds equipped with a system of CR-type equations. Compared to the early days when the purpose of CR geometry was to supply tools for the analysis of the existence and regularity of solutions to the \\bar\\partial-Neumann problem, it has rapidly acquired a life of its own and has became an important topic in differential geometry and the study of non-linear partial differential equations. A full understanding of modern CR geometry requires knowledge of various topics such as real/complex differential and symplectic geometry, foliation theory, the geometric theory of PDE's, and microlocal analysis. Nowadays, the subject of CR geometry is very rich in results, and the amount of material required to reach competence is daunting to graduate students who wish to learn it. However, the present book does not aim at introducing all the topics of current interest in CR geometry. Instead, an attempt is made to be friendly to the novice by moving, in a fairly relaxed way, f...

  11. The geometry description markup language

    International Nuclear Information System (INIS)

    Chytracek, R.

    2001-01-01

    Currently, a lot of effort is being put on designing complex detectors. A number of simulation and reconstruction frameworks and applications have been developed with the aim to make this job easier. A very important role in this activity is played by the geometry description of the detector apparatus layout and its working environment. However, no real common approach to represent geometry data is available and such data can be found in various forms starting from custom semi-structured text files, source code (C/C++/FORTRAN), to XML and database solutions. The XML (Extensible Markup Language) has proven to provide an interesting approach for describing detector geometries, with several different but incompatible XML-based solutions existing. Therefore, interoperability and geometry data exchange among different frameworks is not possible at present. The author introduces a markup language for geometry descriptions. Its aim is to define a common approach for sharing and exchanging of geometry description data. Its requirements and design have been driven by experience and user feedback from existing projects which have their geometry description in XML

  12. Reproducibility in Research: Systems, Infrastructure, Culture

    Directory of Open Access Journals (Sweden)

    Tom Crick

    2017-11-01

    Full Text Available The reproduction and replication of research results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the challenges closely revolve around the ability to implement (and exploit novel algorithms and models. Taking a new approach from the literature and applying it to a new codebase frequently requires local knowledge missing from the published manuscripts and transient project websites. Alongside this issue, benchmarking, and the lack of open, transparent and fair benchmark sets present another barrier to the verification and validation of claimed results. In this paper, we outline several recommendations to address these issues, driven by specific examples from a range of scientific domains. Based on these recommendations, we propose a high-level prototype open automated platform for scientific software development which effectively abstracts specific dependencies from the individual researcher and their workstation, allowing easy sharing and reproduction of results. This new e-infrastructure for reproducible computational science offers the potential to incentivise a culture change and drive the adoption of new techniques to improve the quality and efficiency – and thus reproducibility – of scientific exploration.

  13. Head First 2D Geometry

    CERN Document Server

    Fallow), Stray

    2009-01-01

    Having trouble with geometry? Do Pi, The Pythagorean Theorem, and angle calculations just make your head spin? Relax. With Head First 2D Geometry, you'll master everything from triangles, quads and polygons to the time-saving secrets of similar and congruent angles -- and it'll be quick, painless, and fun. Through entertaining stories and practical examples from the world around you, this book takes you beyond boring problems. You'll actually use what you learn to make real-life decisions, like using angles and parallel lines to crack a mysterious CSI case. Put geometry to work for you, and

  14. A first course in geometry

    CERN Document Server

    Walsh, Edward T

    2014-01-01

    This introductory text is designed to help undergraduate students develop a solid foundation in geometry. Early chapters progress slowly, cultivating the necessary understanding and self-confidence for the more rapid development that follows. The extensive treatment can be easily adapted to accommodate shorter courses. Starting with the language of mathematics as expressed in the algebra of logic and sets, the text covers geometric sets of points, separation and angles, triangles, parallel lines, similarity, polygons and area, circles, space geometry, and coordinate geometry. Each chapter incl

  15. Differential geometry curves, surfaces, manifolds

    CERN Document Server

    Kohnel, Wolfgang

    2002-01-01

    This carefully written book is an introduction to the beautiful ideas and results of differential geometry. The first half covers the geometry of curves and surfaces, which provide much of the motivation and intuition for the general theory. Special topics that are explored include Frenet frames, ruled surfaces, minimal surfaces and the Gauss-Bonnet theorem. The second part is an introduction to the geometry of general manifolds, with particular emphasis on connections and curvature. The final two chapters are insightful examinations of the special cases of spaces of constant curvature and Einstein manifolds. The text is illustrated with many figures and examples. The prerequisites are undergraduate analysis and linear algebra.

  16. Advances in discrete differential geometry

    CERN Document Server

    2016-01-01

    This is one of the first books on a newly emerging field of discrete differential geometry and an excellent way to access this exciting area. It surveys the fascinating connections between discrete models in differential geometry and complex analysis, integrable systems and applications in computer graphics. The authors take a closer look at discrete models in differential geometry and dynamical systems. Their curves are polygonal, surfaces are made from triangles and quadrilaterals, and time is discrete. Nevertheless, the difference between the corresponding smooth curves, surfaces and classical dynamical systems with continuous time can hardly be seen. This is the paradigm of structure-preserving discretizations. Current advances in this field are stimulated to a large extent by its relevance for computer graphics and mathematical physics. This book is written by specialists working together on a common research project. It is about differential geometry and dynamical systems, smooth and discrete theories, ...

  17. Hyperbolic Metamaterials with Complex Geometry

    DEFF Research Database (Denmark)

    Lavrinenko, Andrei; Andryieuski, Andrei; Zhukovsky, Sergei

    2016-01-01

    We investigate new geometries of hyperbolic metamaterialssuch as highly corrugated structures, nanoparticle monolayer assemblies, super-structured or vertically arranged multilayersand nanopillars. All structures retain basic propertiesof hyperbolic metamaterials, but have functionality improved...

  18. An introduction to differential geometry

    CERN Document Server

    Willmore, T J

    2012-01-01

    This text employs vector methods to explore the classical theory of curves and surfaces. Topics include basic theory of tensor algebra, tensor calculus, calculus of differential forms, and elements of Riemannian geometry. 1959 edition.

  19. Symplectic geometry and Fourier analysis

    CERN Document Server

    Wallach, Nolan R

    2018-01-01

    Suitable for graduate students in mathematics, this monograph covers differential and symplectic geometry, homogeneous symplectic manifolds, Fourier analysis, metaplectic representation, quantization, Kirillov theory. Includes Appendix on Quantum Mechanics by Robert Hermann. 1977 edition.

  20. Topology and geometry for physicists

    CERN Document Server

    Nash, Charles

    1983-01-01

    Differential geometry and topology are essential tools for many theoretical physicists, particularly in the study of condensed matter physics, gravity, and particle physics. Written by physicists for physics students, this text introduces geometrical and topological methods in theoretical physics and applied mathematics. It assumes no detailed background in topology or geometry, and it emphasizes physical motivations, enabling students to apply the techniques to their physics formulas and research. ""Thoroughly recommended"" by The Physics Bulletin, this volume's physics applications range fr

  1. PSYCHOLOGY. Estimating the reproducibility of psychological science.

    Science.gov (United States)

    2015-08-28

    Reproducibility is a defining feature of science, but the extent to which it characterizes current research is unknown. We conducted replications of 100 experimental and correlational studies published in three psychology journals using high-powered designs and original materials when available. Replication effects were half the magnitude of original effects, representing a substantial decline. Ninety-seven percent of original studies had statistically significant results. Thirty-six percent of replications had statistically significant results; 47% of original effect sizes were in the 95% confidence interval of the replication effect size; 39% of effects were subjectively rated to have replicated the original result; and if no bias in original results is assumed, combining original and replication results left 68% with statistically significant effects. Correlational tests suggest that replication success was better predicted by the strength of original evidence than by characteristics of the original and replication teams. Copyright © 2015, American Association for the Advancement of Science.

  2. Geometry and physics of branes

    Energy Technology Data Exchange (ETDEWEB)

    Gal' tsov, D V

    2003-03-21

    The book brings together the contents of lecture courses delivered at the school 'Geometry and Physics of Branes' which took place at the Center 'Alessandro Volta' (Como, Italy) in the spring of 2001. The purpose of the school was to provide an introduction to some lines of research, related to the notion of branes in superstring theory, which are in the focus of attention both in the physical and mathematical communities. The book is structured into three parts: the first contains an elementary introduction to branes, the second is devoted to physical aspects (conformal field theory on open and unoriented surfaces and topics in string tachyon dynamics), and the last contains some more formal mathematical developments. An introduction to branes is given in a remarkably lucid contribution by A Lerda. It opens with a construction of p-brane solutions in classical IIA and IIB supergravities with particular emphasis on the 'fundamental string' solution, the NS5-brane and the D3-brane. Then, the quantum description of D-branes is discussed in terms of boundary states of the closed superstring, which is an alternative to the more common description in terms of open strings with Dirichlet boundary conditions in the transverse to the brane directions. When a constant gauge field is present in the D-brane worldvolume, the boundary states are coherent states of the string oscillators depending on the field strength tensor. The couplings of the brane to the bulk fields - the graviton, the dilaton, and the Kalb-Ramond fields - are then extracted and shown to be precisely the ones that are produced by the Dirac-Born-Infeld action governing the low-energy dynamics of the D-brane derived using the open strings formalism. It is also shown that in the classical limit, the boundary states correctly reproduce the parameters of the corresponding classical solutions. The second part of the book starts with a contribution by Y S Stanev devoted to the two

  3. A technique for reproducible roentgenprograms of the intercondylar sulcus for the study of the femoropatellar

    International Nuclear Information System (INIS)

    Koelbel, R.; Bergmann, G.; Rohlmann, A.

    1979-01-01

    Roentgenographic documentation of certain features of FP-joint geometry and orientation may serve as guideline in deciding on the form of treatment for chondromalacia or recurrent patellar dislocation. Reproducible conditions for taking roentgen films are equally important for this purpose as well as for quantitative measurements and possible statistical work. A new positioning device for the patient's legs has been designed utilizing a parallellogram frame. The roentgenographic technique for skyline views at 30 0 , 60 0 and 90 0 inclination of the central beam relative to the femoral axis is described. The advantages over previous techniques are the ease of handling the positioning frame, the need for only vertical and horizontal adjustment of the roentgen tube, independence of the type of tube or table, reproducibility of cassette and patient positioning. (orig.) [de

  4. Tuning spin transport properties and molecular magnetoresistance through contact geometry

    Science.gov (United States)

    Ulman, Kanchan; Narasimhan, Shobhana; Delin, Anna

    2014-01-01

    Molecular spintronics seeks to unite the advantages of using organic molecules as nanoelectronic components, with the benefits of using spin as an additional degree of freedom. For technological applications, an important quantity is the molecular magnetoresistance. In this work, we show that this parameter is very sensitive to the contact geometry. To demonstrate this, we perform ab initio calculations, combining the non-equilibrium Green's function method with density functional theory, on a dithienylethene molecule placed between spin-polarized nickel leads of varying geometries. We find that, in general, the magnetoresistance is significantly higher when the contact is made to sharp tips than to flat surfaces. Interestingly, this holds true for both resonant and tunneling conduction regimes, i.e., when the molecule is in its "closed" and "open" conformations, respectively. We find that changing the lead geometry can increase the magnetoresistance by up to a factor of ˜5. We also introduce a simple model that, despite requiring minimal computational time, can recapture our ab initio results for the behavior of magnetoresistance as a function of bias voltage. This model requires as its input only the density of states on the anchoring atoms, at zero bias voltage. We also find that the non-resonant conductance in the open conformation of the molecule is significantly impacted by the lead geometry. As a result, the ratio of the current in the closed and open conformations can also be tuned by varying the geometry of the leads, and increased by ˜400%.

  5. Tuning spin transport properties and molecular magnetoresistance through contact geometry

    International Nuclear Information System (INIS)

    Ulman, Kanchan; Narasimhan, Shobhana; Delin, Anna

    2014-01-01

    Molecular spintronics seeks to unite the advantages of using organic molecules as nanoelectronic components, with the benefits of using spin as an additional degree of freedom. For technological applications, an important quantity is the molecular magnetoresistance. In this work, we show that this parameter is very sensitive to the contact geometry. To demonstrate this, we perform ab initio calculations, combining the non-equilibrium Green's function method with density functional theory, on a dithienylethene molecule placed between spin-polarized nickel leads of varying geometries. We find that, in general, the magnetoresistance is significantly higher when the contact is made to sharp tips than to flat surfaces. Interestingly, this holds true for both resonant and tunneling conduction regimes, i.e., when the molecule is in its “closed” and “open” conformations, respectively. We find that changing the lead geometry can increase the magnetoresistance by up to a factor of ∼5. We also introduce a simple model that, despite requiring minimal computational time, can recapture our ab initio results for the behavior of magnetoresistance as a function of bias voltage. This model requires as its input only the density of states on the anchoring atoms, at zero bias voltage. We also find that the non-resonant conductance in the open conformation of the molecule is significantly impacted by the lead geometry. As a result, the ratio of the current in the closed and open conformations can also be tuned by varying the geometry of the leads, and increased by ∼400%

  6. Tuning spin transport properties and molecular magnetoresistance through contact geometry.

    Science.gov (United States)

    Ulman, Kanchan; Narasimhan, Shobhana; Delin, Anna

    2014-01-28

    Molecular spintronics seeks to unite the advantages of using organic molecules as nanoelectronic components, with the benefits of using spin as an additional degree of freedom. For technological applications, an important quantity is the molecular magnetoresistance. In this work, we show that this parameter is very sensitive to the contact geometry. To demonstrate this, we perform ab initio calculations, combining the non-equilibrium Green's function method with density functional theory, on a dithienylethene molecule placed between spin-polarized nickel leads of varying geometries. We find that, in general, the magnetoresistance is significantly higher when the contact is made to sharp tips than to flat surfaces. Interestingly, this holds true for both resonant and tunneling conduction regimes, i.e., when the molecule is in its "closed" and "open" conformations, respectively. We find that changing the lead geometry can increase the magnetoresistance by up to a factor of ∼5. We also introduce a simple model that, despite requiring minimal computational time, can recapture our ab initio results for the behavior of magnetoresistance as a function of bias voltage. This model requires as its input only the density of states on the anchoring atoms, at zero bias voltage. We also find that the non-resonant conductance in the open conformation of the molecule is significantly impacted by the lead geometry. As a result, the ratio of the current in the closed and open conformations can also be tuned by varying the geometry of the leads, and increased by ∼400%.

  7. Reproducibility in Psychological Science: When Do Psychological Phenomena Exist?

    Directory of Open Access Journals (Sweden)

    Seppo E. Iso-Ahola

    2017-06-01

    Full Text Available Scientific evidence has recently been used to assert that certain psychological phenomena do not exist. Such claims, however, cannot be made because (1 scientific method itself is seriously limited (i.e., it can never prove a negative; (2 non-existence of phenomena would require a complete absence of both logical (theoretical and empirical support; even if empirical support is weak, logical and theoretical support can be strong; (3 statistical data are only one piece of evidence and cannot be used to reduce psychological phenomena to statistical phenomena; and (4 psychological phenomena vary across time, situations and persons. The human mind is unreproducible from one situation to another. Psychological phenomena are not particles that can decisively be tested and discovered. Therefore, a declaration that a phenomenon is not real is not only theoretically and empirically unjustified but runs counter to the propositional and provisional nature of scientific knowledge. There are only “temporary winners” and no “final truths” in scientific knowledge. Psychology is a science of subtleties in human affect, cognition and behavior. Its phenomena fluctuate with conditions and may sometimes be difficult to detect and reproduce empirically. When strictly applied, reproducibility is an overstated and even questionable concept in psychological science. Furthermore, statistical measures (e.g., effect size are poor indicators of the theoretical importance and relevance of phenomena (cf. “deliberate practice” vs. “talent” in expert performance, not to mention whether phenomena are real or unreal. To better understand psychological phenomena, their theoretical and empirical properties should be examined via multiple parameters and criteria. Ten such parameters are suggested.

  8. Reproducibility in Psychological Science: When Do Psychological Phenomena Exist?

    Science.gov (United States)

    Iso-Ahola, Seppo E.

    2017-01-01

    Scientific evidence has recently been used to assert that certain psychological phenomena do not exist. Such claims, however, cannot be made because (1) scientific method itself is seriously limited (i.e., it can never prove a negative); (2) non-existence of phenomena would require a complete absence of both logical (theoretical) and empirical support; even if empirical support is weak, logical and theoretical support can be strong; (3) statistical data are only one piece of evidence and cannot be used to reduce psychological phenomena to statistical phenomena; and (4) psychological phenomena vary across time, situations and persons. The human mind is unreproducible from one situation to another. Psychological phenomena are not particles that can decisively be tested and discovered. Therefore, a declaration that a phenomenon is not real is not only theoretically and empirically unjustified but runs counter to the propositional and provisional nature of scientific knowledge. There are only “temporary winners” and no “final truths” in scientific knowledge. Psychology is a science of subtleties in human affect, cognition and behavior. Its phenomena fluctuate with conditions and may sometimes be difficult to detect and reproduce empirically. When strictly applied, reproducibility is an overstated and even questionable concept in psychological science. Furthermore, statistical measures (e.g., effect size) are poor indicators of the theoretical importance and relevance of phenomena (cf. “deliberate practice” vs. “talent” in expert performance), not to mention whether phenomena are real or unreal. To better understand psychological phenomena, their theoretical and empirical properties should be examined via multiple parameters and criteria. Ten such parameters are suggested. PMID:28626435

  9. Reproducibility of myelin content-based human habenula segmentation at 3 Tesla.

    Science.gov (United States)

    Kim, Joo-Won; Naidich, Thomas P; Joseph, Joshmi; Nair, Divya; Glasser, Matthew F; O'halloran, Rafael; Doucet, Gaelle E; Lee, Won Hee; Krinsky, Hannah; Paulino, Alejandro; Glahn, David C; Anticevic, Alan; Frangou, Sophia; Xu, Junqian

    2018-03-26

    In vivo morphological study of the human habenula, a pair of small epithalamic nuclei adjacent to the dorsomedial thalamus, has recently gained significant interest for its role in reward and aversion processing. However, segmenting the habenula from in vivo magnetic resonance imaging (MRI) is challenging due to the habenula's small size and low anatomical contrast. Although manual and semi-automated habenula segmentation methods have been reported, the test-retest reproducibility of the segmented habenula volume and the consistency of the boundaries of habenula segmentation have not been investigated. In this study, we evaluated the intra- and inter-site reproducibility of in vivo human habenula segmentation from 3T MRI (0.7-0.8 mm isotropic resolution) using our previously proposed semi-automated myelin contrast-based method and its fully-automated version, as well as a previously published manual geometry-based method. The habenula segmentation using our semi-automated method showed consistent boundary definition (high Dice coefficient, low mean distance, and moderate Hausdorff distance) and reproducible volume measurement (low coefficient of variation). Furthermore, the habenula boundary in our semi-automated segmentation from 3T MRI agreed well with that in the manual segmentation from 7T MRI (0.5 mm isotropic resolution) of the same subjects. Overall, our proposed semi-automated habenula segmentation showed reliable and reproducible habenula localization, while its fully-automated version offers an efficient way for large sample analysis. © 2018 Wiley Periodicals, Inc.

  10. Reproducibility study of TLD-100 micro-cubes at radiotherapy dose level

    International Nuclear Information System (INIS)

    Rosa, Luiz Antonio R. da; Regulla, Dieter F.; Fill, Ute A.

    1999-01-01

    The precision of the thermoluminescent response of Harshaw micro-cube dosimeters (TLD-100), evaluated in both Harshaw thermoluminescent readers 5500 and 3500, for 1 Gy dose value, was investigated. The mean reproducibility for micro-cubes, pre-readout annealed at 100 deg. C for 15 min, evaluated with the manual planchet reader 3500, is 0.61% (1 standard deviation). When micro-cubes are evaluated with the automated hot-gas reader 5500, reproducibility values are undoubtedly worse, mean reproducibility for numerically stabilised dosimeters being equal to 3.27% (1 standard deviation). These results indicate that the reader model 5500, or, at least, the instrument used for the present measurements, is not adequate for micro-cube evaluation, if precise and accurate dosimetry is required. The difference in precision is apparently due to geometry inconsistencies in the orientation of the imperfect micro-cube faces during readout, requiring careful and manual reproducible arrangement of the selected micro-cube faces in contact with the manual reader planchet

  11. Optical phantoms of varying geometry based on thin building blocks with controlled optical properties

    NARCIS (Netherlands)

    de Bruin, Daniel M.; Bremmer, Rolf H.; Kodach, Vitali M.; de Kinkelder, Roy; van Marle, Jan; van Leeuwen, Ton G.; Faber, Dirk J.

    2010-01-01

    Current innovations in optical imaging, measurement techniques, and data analysis algorithms express the need for reliable testing and comparison methods. We present the design and characterization of silicone elastomer-based optical phantoms. Absorption is included by adding a green dye and

  12. The geometry of percolation fronts in two-dimensional lattices with spatially varying densities

    International Nuclear Information System (INIS)

    Gastner, Michael T; Oborny, Beáta

    2012-01-01

    Percolation theory is usually applied to lattices with a uniform probability p that a site is occupied or that a bond is closed. The more general case, where p is a function of the position x, has received less attention. Previous studies with long-range spatial variations in p(x) have only investigated cases where p has a finite, non-zero gradient at the critical point p c . Here we extend the theory to two-dimensional cases in which the gradient can change from zero to infinity. We present scaling laws for the width and length of the hull (i.e. the boundary of the spanning cluster). We show that the scaling exponents for the width and the length depend on the shape of p(x), but they always have a constant ratio 4/3 so that the hull's fractal dimension D = 7/4 is invariant. On this basis, we derive and verify numerically an asymptotic expression for the probability h(x) that a site at a given distance x from p c is on the hull. (paper)

  13. 3D Printer Instrumentation to Create Varied Geometries of Robotic Limbs and Heterogeneous Granular Media

    Science.gov (United States)

    2015-05-20

    Transfer Robo Ant The 3D printer was used to rapidly prototype a robot ant . The robot ant was used to model the behavior of the fire ant and to model...computer models and 3D printed ant robots are shown below. Snake Bot We used the 3D printed to rapidly design a modular, easily-modified snake...living organism (modern mudskippers, a terrestrial fish) and extinct early tetrapods (e.g. Ichthyostega, Acanthostega) while allowing us to explore

  14. Theoretical galactic cosmic ray electron spectrum obtained for sources of varying geometry

    International Nuclear Information System (INIS)

    Cohen, M.E.

    1969-01-01

    Jokipii and Meyer have recently obtained an electron density energy spectrum of the cosmic rays, originating in the Galaxy, using integral solutions of the steady state transfer equations, by considering a circular cylindric galactic disc as source and approximating the resulting fourth order integral. In this report, we present general results, obtained by using an arbitrary circular cylindric source, without restricting ourselves to the galactic disc. The integrals are treated exactly. The conclusions of Jokipii and Meyer form special cases of these results. We also obtain an exponential energy variation which, at the moment, is not observed experimentally. The second part of this work deals with more complicated, but perhaps more realistic models of elliptic cylindric and ellipsoidal galactic disc sources. One may also note that a very large source concentrated in a very small region gives a spectrum not unlike that for a small source distributed throughout a large volume. Finally, it may be remarked that the model adopted is much less restrictive than the artificial conception of 'leakage time' followed by other workers. (author) [fr

  15. CFD analysis of cloud cavitation on three tip-modified propellers with systematically varied tip geometry

    DEFF Research Database (Denmark)

    Shin, K. W.; Andersen, Poul

    2015-01-01

    The blade tip loading is often reduced as an effort to restrain sheet and tip vortex cavitation in the design of marine propellers. This CFD analysis demonstrates that an excessive reduction of the tip loading can cause cloud cavitation responsible for much of noise and surface erosion. Detached...

  16. Numerical modeling of sandwich panel response to ballistic loading - energy balance for varying impactor geometries

    DEFF Research Database (Denmark)

    Kepler, Jørgen Asbøl; Hansen, Michael Rygaard

    2007-01-01

    thickness but significantly smaller than panel length dimensions. Experimental data for the total loss in impactor kinetic energy and momentum and estimated damage energy are described. For a selection of impactor tip shapes, the numerical model is used to evaluate different simplified force histories...... between the impactor and the panel during penetration. The force histories are selected from a primary criterion of conservation of linear momentum in the impactor-panel system, and evaluated according to agreement with the total measured energy balance.......A sandwich panel is described by an axisymmetric lumped mass- spring model. The panel compliance is simplified, considering only core shear deformation uniformly distributed across the core thickness. Transverse penetrating impact is modeled for impactors of diameters comparable to the panel...

  17. Reproducibility of morphometric X-ray absorptiometry

    International Nuclear Information System (INIS)

    Culton, N.; Pocock, N.

    1999-01-01

    Full text: Morphometric X-ray absorptiometry (MXA) using DXA is potentially a useful clinical tool which may provide additional vertebral fracture information with low radiation exposure. While morphometric analysis is semi-automated, operator intervention is crucial for the accurate positioning of the six data points quantifying the vertebral heights at the anterior, middle and posterior positions. Our study evaluated intra-operator reproducibility of MXA in an elderly patient population and assessed the effect of training and experience on vertebral height precision. Ten patients, with a mean lumbar T score of - 2.07, were studied. Images were processed by a trained operator who had initially only limited morphometric experience. The analysis of the data files were repeated at 2 and 6 weeks, during which time the operator had obtained further experience and training. The intra-operator precision of vertebral height measurements was calculated using the three separate combinations of paired analyses, and expressed as the coefficient of variation. This study confirms the importance of adequate training and attention to detail in MXA analysis. The data indicate that the precision of MXA is adequate for its use in the diagnosis of vertebral fractures, based on a 20% deformity criteria. Use of MXA for monitoring would require approximately an 8% change in vertebral heights to achieve statistical significance

  18. Reproducibility of neuroimaging analyses across operating systems.

    Science.gov (United States)

    Glatard, Tristan; Lewis, Lindsay B; Ferreira da Silva, Rafael; Adalat, Reza; Beck, Natacha; Lepage, Claude; Rioux, Pierre; Rousseau, Marc-Etienne; Sherif, Tarek; Deelman, Ewa; Khalili-Mahani, Najmeh; Evans, Alan C

    2015-01-01

    Neuroimaging pipelines are known to generate different results depending on the computing platform where they are compiled and executed. We quantify these differences for brain tissue classification, fMRI analysis, and cortical thickness (CT) extraction, using three of the main neuroimaging packages (FSL, Freesurfer and CIVET) and different versions of GNU/Linux. We also identify some causes of these differences using library and system call interception. We find that these packages use mathematical functions based on single-precision floating-point arithmetic whose implementations in operating systems continue to evolve. While these differences have little or no impact on simple analysis pipelines such as brain extraction and cortical tissue classification, their accumulation creates important differences in longer pipelines such as subcortical tissue classification, fMRI analysis, and cortical thickness extraction. With FSL, most Dice coefficients between subcortical classifications obtained on different operating systems remain above 0.9, but values as low as 0.59 are observed. Independent component analyses (ICA) of fMRI data differ between operating systems in one third of the tested subjects, due to differences in motion correction. With Freesurfer and CIVET, in some brain regions we find an effect of build or operating system on cortical thickness. A first step to correct these reproducibility issues would be to use more precise representations of floating-point numbers in the critical sections of the pipelines. The numerical stability of pipelines should also be reviewed.

  19. Environment and industrial economy: Challenge of reproducibility

    International Nuclear Information System (INIS)

    Rullani, E.

    1992-01-01

    Historically and methodologically counterposed until now, the environmentalist and the economic approach to environmental problems need to be integrated in a new approach that considers, from one side, the relevance of the ecological equilibria for the economic systems and, from the other side, the economic dimension (in terms of investments and transformations in the production system) of any attempt to achieve a better environment. In order to achieve this integration, both approaches are compelled to give up some cultural habits that have characterized them, and have contributed to over-emphasize the opposition between them. The article shows that both approaches can converge into a new one, in which environment is no longer only an holistic, not bargainable, natural external limit to human activity (as in the environmentalist approach), nor simply a scarce and exhaustible resource (as economics tends to consider it); environment should instead become part of the reproducibility sphere, or, in other words, it must be regarded as part of the output that the economic system provides. This new approach, due to scientific and technological advances, is made possible for an increasing class of environmental problems. In order to do this, an evolution is required, that could be able to convert environmental goals into investment and technological innovation goals, and communicate to the firms the value society assigns to environmental resources. This value, the author suggests, should correspond to the reproduction cost. Various examples of this new approach are analyzed and discussed

  20. Variable geometry Darrieus wind machine

    Science.gov (United States)

    Pytlinski, J. T.; Serrano, D.

    1983-08-01

    A variable geometry Darrieus wind machine is proposed. The lower attachment of the blades to the rotor can move freely up and down the axle allowing the blades of change shape during rotation. Experimental data for a 17 m. diameter Darrieus rotor and a theoretical model for multiple streamtube performance prediction were used to develop a computer simulation program for studying parameters that affect the machine's performance. This new variable geometry concept is described and interrelated with multiple streamtube theory through aerodynamic parameters. The computer simulation study shows that governor behavior of a Darrieus turbine can not be attained by a standard turbine operating within normally occurring rotational velocity limits. A second generation variable geometry Darrieus wind turbine which uses a telescopic blade is proposed as a potential improvement on the studied concept.

  1. Flux compactifications and generalized geometries

    International Nuclear Information System (INIS)

    Grana, Mariana

    2006-01-01

    Following the lectures given at CERN Winter School 2006, we present a pedagogical overview of flux compactifications and generalized geometries, concentrating on closed string fluxes in type II theories. We start by reviewing the supersymmetric flux configurations with maximally symmetric four-dimensional spaces. We then discuss the no-go theorems (and their evasion) for compactifications with fluxes. We analyse the resulting four-dimensional effective theories for Calabi-Yau and Calabi-Yau orientifold compactifications, concentrating on the flux-induced superpotentials. We discuss the generic mechanism of moduli stabilization and illustrate with two examples: the conifold in IIB and a T 6 /(Z 3 x Z 3 ) torus in IIA. We finish by studying the effective action and flux vacua for generalized geometries in the context of generalized complex geometry

  2. Flux compactifications and generalized geometries

    Energy Technology Data Exchange (ETDEWEB)

    Grana, Mariana [Service de Physique Theorique, CEA/Saclay, 91191 Gif-sur-Yvette Cedex (France)

    2006-11-07

    Following the lectures given at CERN Winter School 2006, we present a pedagogical overview of flux compactifications and generalized geometries, concentrating on closed string fluxes in type II theories. We start by reviewing the supersymmetric flux configurations with maximally symmetric four-dimensional spaces. We then discuss the no-go theorems (and their evasion) for compactifications with fluxes. We analyse the resulting four-dimensional effective theories for Calabi-Yau and Calabi-Yau orientifold compactifications, concentrating on the flux-induced superpotentials. We discuss the generic mechanism of moduli stabilization and illustrate with two examples: the conifold in IIB and a T{sup 6} /(Z{sub 3} x Z{sub 3}) torus in IIA. We finish by studying the effective action and flux vacua for generalized geometries in the context of generalized complex geometry.

  3. Euclidean geometry and its subgeometries

    CERN Document Server

    Specht, Edward John; Calkins, Keith G; Rhoads, Donald H

    2015-01-01

    In this monograph, the authors present a modern development of Euclidean geometry from independent axioms, using up-to-date language and providing detailed proofs. The axioms for incidence, betweenness, and plane separation are close to those of Hilbert. This is the only axiomatic treatment of Euclidean geometry that uses axioms not involving metric notions and that explores congruence and isometries by means of reflection mappings. The authors present thirteen axioms in sequence, proving as many theorems as possible at each stage and, in the process, building up subgeometries, most notably the Pasch and neutral geometries. Standard topics such as the congruence theorems for triangles, embedding the real numbers in a line, and coordinatization of the plane are included, as well as theorems of Pythagoras, Desargues, Pappas, Menelaus, and Ceva. The final chapter covers consistency and independence of axioms, as well as independence of definition properties. There are over 300 exercises; solutions to many of the...

  4. Guide to Computational Geometry Processing

    DEFF Research Database (Denmark)

    Bærentzen, Jakob Andreas; Gravesen, Jens; Anton, François

    be processed before it is useful. This Guide to Computational Geometry Processing reviews the algorithms for processing geometric data, with a practical focus on important techniques not covered by traditional courses on computer vision and computer graphics. This is balanced with an introduction...... to the theoretical and mathematical underpinnings of each technique, enabling the reader to not only implement a given method, but also to understand the ideas behind it, its limitations and its advantages. Topics and features: Presents an overview of the underlying mathematical theory, covering vector spaces......, metric space, affine spaces, differential geometry, and finite difference methods for derivatives and differential equations Reviews geometry representations, including polygonal meshes, splines, and subdivision surfaces Examines techniques for computing curvature from polygonal meshes Describes...

  5. Electrodynamics and Spacetime Geometry: Foundations

    Science.gov (United States)

    Cabral, Francisco; Lobo, Francisco S. N.

    2017-02-01

    We explore the intimate connection between spacetime geometry and electrodynamics. This link is already implicit in the constitutive relations between the field strengths and excitations, which are an essential part of the axiomatic structure of electromagnetism, clearly formulated via integration theory and differential forms. We review the foundations of classical electromagnetism based on charge and magnetic flux conservation, the Lorentz force and the constitutive relations. These relations introduce the conformal part of the metric and allow the study of electrodynamics for specific spacetime geometries. At the foundational level, we discuss the possibility of generalizing the vacuum constitutive relations, by relaxing the fixed conditions of homogeneity and isotropy, and by assuming that the symmetry properties of the electro-vacuum follow the spacetime isometries. The implications of this extension are briefly discussed in the context of the intimate connection between electromagnetism and the geometry (and causal structure) of spacetime.

  6. Dayside merging and cusp geometry

    International Nuclear Information System (INIS)

    Crooker, N.U.

    1979-01-01

    Geometrical considerations are presented to show that dayside magnetic merging when constrained to act only where the fields are antiparallel results in lines of merging that converge at the polar cusps. An important consequence of this geometry is that no accelerated flows are predicted across the dayside magnetopause. Acceleration owing to merging acts in opposition to the magnetosheath flow at the merging point and produces the variably directed, slower-than-magnetosheath flows observed in the entry layer. Another consequence of the merging geometry is that much of the time closed field lines constitute the subsolar region of the magnetopause. The manner in which the polar cap convection patterns predicted by the proposed geometry change as the interplanetary field is rotated through 360 0 provides a unifying description of how the observed single circular vortex and the crescent-shaped double vortex patterns mutually evolve under the influence of a single operating principle

  7. DOGBONE GEOMETRY FOR RECIRCULATING ACCELERATORS

    International Nuclear Information System (INIS)

    BERG, J.S.; JOHNSTONE, C.; SUMMERS, D.

    2001-01-01

    Most scenarios for accelerating muons require recirculating acceleration. A racetrack shape for the accelerator requires particles with lower energy in early passes to traverse almost the same length of arc as particles with the highest energy. This extra arc length may lead to excess decays and excess cost. Changing the geometry to a dogbone shape, where there is a single linac and the beam turns completely around at the end of the linac, returning to the same end of the linac from which it exited, addresses this problem. In this design, the arc lengths can be proportional to the particle's momentum. This paper proposes an approximate cost model for a recirculating accelerator, attempts to make cost-optimized designs for both racetrack and dogbone geometries, and demonstrates that the dogbone geometry does appear to be more cost effective

  8. Geometric Transformations in Engineering Geometry

    Directory of Open Access Journals (Sweden)

    I. F. Borovikov

    2015-01-01

    Full Text Available Recently, for business purposes, in view of current trends and world experience in training engineers, research and faculty staff there has been a need to transform traditional courses of descriptive geometry into the course of engineering geometry in which the geometrical transformations have to become its main section. On the basis of critical analysis the paper gives suggestions to improve a presentation technique of this section both in the classroom and in academic literature, extend an application scope of geometrical transformations to solve the position and metric tasks and simulation of surfaces, as well as to design complex engineering configurations, which meet a number of pre-specified conditions.The article offers to make a number of considerable amendments to the terms and definitions used in the existing courses of descriptive geometry. It draws some conclusions and makes the appropriate proposals on feasibility of coordination in teaching the movement transformation in the courses of analytical and descriptive geometry. This will provide interdisciplinary team teaching and allow students to be convinced that a combination of analytical and graphic ways to solve geometric tasks is useful and reasonable.The traditional sections of learning courses need to be added with a theory of projective and bi-rational transformations. In terms of application simplicity and convenience it is enough to consider the central transformations when solving the applied tasks. These transformations contain a beam of sub-invariant (low-invariant straight lines on which the invariant curve induces non-involution and involution projectivities. The expediency of nonlinear transformations application is shown in the article by a specific example of geometric modeling of the interfacing surface "spar-blade".Implementation of these suggestions will contribute to a real transformation of a traditional course of descriptive geometry to the engineering geometry

  9. Generalized Framework and Algorithms for Illustrative Visualization of Time-Varying Data on Unstructured Meshes

    Energy Technology Data Exchange (ETDEWEB)

    Alexander S. Rattner; Donna Post Guillen; Alark Joshi

    2012-12-01

    Photo- and physically-realistic techniques are often insufficient for visualization of simulation results, especially for 3D and time-varying datasets. Substantial research efforts have been dedicated to the development of non-photorealistic and illustration-inspired visualization techniques for compact and intuitive presentation of such complex datasets. While these efforts have yielded valuable visualization results, a great deal of work has been reproduced in studies as individual research groups often develop purpose-built platforms. Additionally, interoperability between illustrative visualization software is limited due to specialized processing and rendering architectures employed in different studies. In this investigation, a generalized framework for illustrative visualization is proposed, and implemented in marmotViz, a ParaView plugin, enabling its use on variety of computing platforms with various data file formats and mesh geometries. Detailed descriptions of the region-of-interest identification and feature-tracking algorithms incorporated into this tool are provided. Additionally, implementations of multiple illustrative effect algorithms are presented to demonstrate the use and flexibility of this framework. By providing a framework and useful underlying functionality, the marmotViz tool can act as a springboard for future research in the field of illustrative visualization.

  10. KEMAJUAN BELAJAR SISWA PADA GEOMETRI TRANSFORMASI MENGGUNAKAN AKTIVITAS REFLEKSI GEOMETRI

    Directory of Open Access Journals (Sweden)

    Irkham Ulil Albab

    2014-10-01

    Full Text Available Abstrak: Penelitian ini bertujuan untuk mendeskripsikan kemajuan belajar siswa pada materi geometri transformasi yang didukung dengan serangkaian aktivitas belajar berdasarkan Pendidikan Matematika Realistik Indonesia. Penelitian didesain melalui tiga tahap, yaitu tahapan perancangan desain awal, pengujian desain melalui pembelajaran awal dan pembelajaran eksperimental, dan tahap analisis retrospektif. Dalam penelitian ini, Hypothetical Learning Trajectory, HLT (HLT berperan penting sebagai desain pembelajaran sekaligus instrumen penelitian. HLT diujikan terhadap 26 siswa kelas VII. Data dikumpulkan dengan teknik wawancara, pengamatan, dan catatan lapangan. Hasil penelitian menunjukkan bahwa desain pembelajaran ini mampu menstimulasi siswa untuk memberikan karakteristik refleksi dan transformasi geometri lainnya secara informal, mengklasifikasikannya dalam transformasi isometri pada level kedua, dan menemukan garis bantuan refleksi pada level yang lebih formal. Selain itu, garis bantuan refleksi digunakan oleh siswa untuk menggambar bayangan refleksi dan pola pencerminan serta memahami bentuk rotasi dan translasi sebagai kombinasi refleksi adalah level tertinggi. Keyword: transformasi geometri, kombinasi refleksi, rotasi, translasi, design research, HLT STUDENTS’ LEARNING PROGRESS ON TRANSFORMATION GEOMETRY USING THE GEOMETRY REFLECTION ACTIVITIES Abstract: This study was aimed at describing the students’ learning progress on transformation geometry supported by a set of learning activities based on Indonesian Realistic Mathematics Education. The study was designed into three stages, that is, the preliminary design stage, the design testing through initial instruction and experiment, and the restrospective analysis stage. In this study, Hypothetical Learning Trajectory (HLT played an important role as an instructional design and a research instrument. HLT was tested to 26 seventh grade students. The data were collected through interviews

  11. Graphical debugging of combinational geometry

    International Nuclear Information System (INIS)

    Burns, T.J.; Smith, M.S.

    1992-01-01

    A graphical debugger for combinatorial geometry being developed at Oak Ridge National Laboratory is described. The prototype debugger consists of two parts: a FORTRAN-based ''view'' generator and a Microsoft Windows application for displaying the geometry. Options and features of both modules are discussed. Examples illustrating the various options available are presented. The potential for utilizing the images produced using the debugger as a visualization tool for the output of the radiation transport codes is discussed as is the future direction of the development

  12. Lectures on Algebraic Geometry I

    CERN Document Server

    Harder, Gunter

    2012-01-01

    This book and the following second volume is an introduction into modern algebraic geometry. In the first volume the methods of homological algebra, theory of sheaves, and sheaf cohomology are developed. These methods are indispensable for modern algebraic geometry, but they are also fundamental for other branches of mathematics and of great interest in their own. In the last chapter of volume I these concepts are applied to the theory of compact Riemann surfaces. In this chapter the author makes clear how influential the ideas of Abel, Riemann and Jacobi were and that many of the modern metho

  13. Combinatorial geometry in the plane

    CERN Document Server

    Hadwiger, Hugo; Klee, Victor

    2014-01-01

    Geared toward advanced undergraduates familiar with analysis and college geometry, this concise book discusses theorems on topics restricted to the plane such as convexity, coverings, and graphs. In addition to helping students cultivate rigorous thought, the text encourages the development of mathematical intuition and clarifies the nature of mathematical research.The two-part treatment begins with specific topics including integral distances, covering problems, point set geometry and convexity, simple paradoxes involving point sets, and pure combinatorics, among other subjects. The second pa

  14. Modern differential geometry for physicists

    CERN Document Server

    Isham, C J

    1989-01-01

    These notes are the content of an introductory course on modern, coordinate-free differential geometry which is taken by the first-year theoretical physics PhD students, or by students attending the one-year MSc course "Fundamental Fields and Forces" at Imperial College. The book is concerned entirely with mathematics proper, although the emphasis and detailed topics have been chosen with an eye to the way in which differential geometry is applied these days to modern theoretical physics. This includes not only the traditional area of general relativity but also the theory of Yang-Mills fields

  15. Comparison theorems in Riemannian geometry

    CERN Document Server

    Cheeger, Jeff

    2008-01-01

    The central theme of this book is the interaction between the curvature of a complete Riemannian manifold and its topology and global geometry. The first five chapters are preparatory in nature. They begin with a very concise introduction to Riemannian geometry, followed by an exposition of Toponogov's theorem-the first such treatment in a book in English. Next comes a detailed presentation of homogeneous spaces in which the main goal is to find formulas for their curvature. A quick chapter of Morse theory is followed by one on the injectivity radius. Chapters 6-9 deal with many of the most re

  16. Geometry, topology, and string theory

    Energy Technology Data Exchange (ETDEWEB)

    Varadarajan, Uday [Univ. of California, Berkeley, CA (United States)

    2003-01-01

    A variety of scenarios are considered which shed light upon the uses and limitations of classical geometric and topological notions in string theory. The primary focus is on situations in which D-brane or string probes of a given classical space-time see the geometry quite differently than one might naively expect. In particular, situations in which extra dimensions, non-commutative geometries as well as other non-local structures emerge are explored in detail. Further, a preliminary exploration of such issues in Lorentzian space-times with non-trivial causal structures within string theory is initiated.

  17. Spatial geometry and special relativity

    DEFF Research Database (Denmark)

    Kneubil, Fabiana Botelho

    2016-01-01

    In this work, it is shown the interplay of relative and absolute entities, which are present in both spatial geometry and special relativity. In order to strengthen the understanding of special relativity, we discuss firstly an instance of geometry and the existence of both frame......-dependent and frame-independent entities. We depart from a subject well known by students, which is the three-dimensional geometric space in order to compare, afterwards, with the treatment of four-dimensional space in the special relativity. The differences and similarities between these two subjects are also...

  18. Stochastic geometry and its applications

    CERN Document Server

    Chiu, Sung Nok; Kendall, Wilfrid S; Mecke, Joseph

    2013-01-01

    An extensive update to a classic text Stochastic geometry and spatial statistics play a fundamental role in many modern branches of physics, materials sciences, engineering, biology and environmental sciences. They offer successful models for the description of random two- and three-dimensional micro and macro structures and statistical methods for their analysis. The previous edition of this book has served as the key reference in its field for over 18 years and is regarded as the best treatment of the subject of stochastic geometry, both as a subject with vital a

  19. Introduction to topology and geometry

    CERN Document Server

    Stahl, Saul

    2014-01-01

    An easily accessible introduction to over three centuries of innovations in geometry Praise for the First Edition ". . . a welcome alternative to compartmentalized treatments bound to the old thinking. This clearly written, well-illustrated book supplies sufficient background to be self-contained." -CHOICE This fully revised new edition offers the most comprehensive coverage of modern geometry currently available at an introductory level. The book strikes a welcome balance between academic rigor and accessibility, providing a complete and cohesive picture of the science with an unparallele

  20. Algebraic geometry and theta functions

    CERN Document Server

    Coble, Arthur B

    1929-01-01

    This book is the result of extending and deepening all questions from algebraic geometry that are connected to the central problem of this book: the determination of the tritangent planes of a space curve of order six and genus four, which the author treated in his Colloquium Lecture in 1928 at Amherst. The first two chapters recall fundamental ideas of algebraic geometry and theta functions in such fashion as will be most helpful in later applications. In order to clearly present the state of the central problem, the author first presents the better-known cases of genus two (Chapter III) and

  1. Geometry, topology, and string theory

    International Nuclear Information System (INIS)

    Varadarajan, Uday

    2003-01-01

    A variety of scenarios are considered which shed light upon the uses and limitations of classical geometric and topological notions in string theory. The primary focus is on situations in which D-brane or string probes of a given classical space-time see the geometry quite differently than one might naively expect. In particular, situations in which extra dimensions, non-commutative geometries as well as other non-local structures emerge are explored in detail. Further, a preliminary exploration of such issues in Lorentzian space-times with non-trivial causal structures within string theory is initiated

  2. Torsional Newton–Cartan geometry from Galilean gauge theory

    International Nuclear Information System (INIS)

    Banerjee, Rabin; Mukherjee, Pradip

    2016-01-01

    Using the recently advanced Galilean gauge theory (GGT) we give a comprehensive construction of torsional Newton–Cartan (NC) geometry. The coupling of a Galilean symmetric model with background NC geometry following GGT is illustrated by a free nonrelativistic scalar field theory. The issue of spatial diffeomorphism (Son and Wingate 2006 Ann. Phys. 321 197–224; Banerjee et al 2015 Phys. Rev. D 91 084021) is focussed from a new angle. The expression of the torsionful connection is worked out, which is in complete parallel with the relativistic theory. Also, smooth transition of the connection to its well known torsionless expression is demonstrated. A complete (implicit) expression of the torsion tensor for the NC spacetime is provided where the first-order variables occur in a suggestive way. The well known result for the temporal part of torsion is reproduced from our expression. (paper)

  3. Effects of Geometry on the Steady Performance of Planing Hulls

    DEFF Research Database (Denmark)

    Wagner, M. K.; Andersen, Poul

    2003-01-01

    A vortex-lattice method is applied to planing hull forms. The geometry of the jet surfaces next to the wetted hull is estimated on the basis of the hull geometry while its sidewise extent has been found numerically applying a non-linear free-surface pressure condition in the jet region. The method...... is applied to practical hull forms with chines spray rails and with varying deadrise over the length of the boat. The deadrise variation has a large influence on lift and drag. For a design situation, where the total lift and centre of effort is given, the influence on the total drag is less due to change...

  4. Anterior cruciate ligament graft tensioning. Is the maximal sustained one-handed pull technique reproducible?

    Directory of Open Access Journals (Sweden)

    Hirpara Kieran M

    2011-07-01

    Full Text Available Abstract Background Tensioning of anterior cruciate ligament (ACL reconstruction grafts affects the clinical outcome of the procedure. As yet, no consensus has been reached regarding the optimum initial tension in an ACL graft. Most surgeons rely on the maximal sustained one-handed pull technique for graft tension. We aim to determine if this technique is reproducible from patient to patient. Findings We created a device to simulate ACL reconstruction surgery using Ilizarov components and porcine flexor tendons. Six experienced ACL reconstruction surgeons volunteered to tension porcine grafts using the device to see if they could produce a consistent tension. None of the surgeons involved were able to accurately reproduce graft tension over a series of repeat trials. Conclusions We conclude that the maximal sustained one-handed pull technique of ACL graft tensioning is not reproducible from trial to trial. We also conclude that the initial tension placed on an ACL graft varies from surgeon to surgeon.

  5. Anterior cruciate ligament graft tensioning. Is the maximal sustained one-handed pull technique reproducible?

    LENUS (Irish Health Repository)

    O'Neill, Barry J

    2011-07-20

    Abstract Background Tensioning of anterior cruciate ligament (ACL) reconstruction grafts affects the clinical outcome of the procedure. As yet, no consensus has been reached regarding the optimum initial tension in an ACL graft. Most surgeons rely on the maximal sustained one-handed pull technique for graft tension. We aim to determine if this technique is reproducible from patient to patient. Findings We created a device to simulate ACL reconstruction surgery using Ilizarov components and porcine flexor tendons. Six experienced ACL reconstruction surgeons volunteered to tension porcine grafts using the device to see if they could produce a consistent tension. None of the surgeons involved were able to accurately reproduce graft tension over a series of repeat trials. Conclusions We conclude that the maximal sustained one-handed pull technique of ACL graft tensioning is not reproducible from trial to trial. We also conclude that the initial tension placed on an ACL graft varies from surgeon to surgeon.

  6. Liquid scintigraphic gastric emptying - is it reproducible?

    International Nuclear Information System (INIS)

    Cooper, R.G.; Shuter, B.; Leach, M.; Roach, P.J.

    1999-01-01

    Full text: Radioisotope gastric emptying (GE) studies have been used as a non-invasive technique for motility assessment for many years. In a recent study investigating the correlation of mesenteric vascular changes with GE, six subjects had a repeat study 2-4 months later. Repeat studies were required due to minor technical problems (5 subjects) and a very slow GE (I subject) on the original study. Subjects drank 275 ml of 'Ensure Plus' mixed with 8 MBq 67 Ga-DTPA and were imaged for 2 h while lying supine. GE time-activity curves for each subject were generated and time to half emptying (T l/2 ) calculated. Five of the six subjects had more rapid GE on the second study. Three of the subjects had T l/2 values on their second study which were within ± 15 min of their original T l/2 . The other three subjects had T l/2 values on their second study which were 36 min, 55 min and 280 min (subject K.H.) less than their original T l/2 . Statistical analysis (t-test) was performed on paired T l/2 values. The average T l/2 value was greater in the first study than in the second (149 ± 121 and 86 ± 18 min respectively), although the difference was not statistically significant (P ∼ 0.1). Subjects' anxiety levels were not quantitated during the GE study; however, several major equipment faults occurred during the original study of subject K.H., who became visibly stressed. These results suggest that the reproducibility of GE studies may be influenced by psychological factors

  7. Is my network module preserved and reproducible?

    Directory of Open Access Journals (Sweden)

    Peter Langfelder

    2011-01-01

    Full Text Available In many applications, one is interested in determining which of the properties of a network module change across conditions. For example, to validate the existence of a module, it is desirable to show that it is reproducible (or preserved in an independent test network. Here we study several types of network preservation statistics that do not require a module assignment in the test network. We distinguish network preservation statistics by the type of the underlying network. Some preservation statistics are defined for a general network (defined by an adjacency matrix while others are only defined for a correlation network (constructed on the basis of pairwise correlations between numeric variables. Our applications show that the correlation structure facilitates the definition of particularly powerful module preservation statistics. We illustrate that evaluating module preservation is in general different from evaluating cluster preservation. We find that it is advantageous to aggregate multiple preservation statistics into summary preservation statistics. We illustrate the use of these methods in six gene co-expression network applications including 1 preservation of cholesterol biosynthesis pathway in mouse tissues, 2 comparison of human and chimpanzee brain networks, 3 preservation of selected KEGG pathways between human and chimpanzee brain networks, 4 sex differences in human cortical networks, 5 sex differences in mouse liver networks. While we find no evidence for sex specific modules in human cortical networks, we find that several human cortical modules are less preserved in chimpanzees. In particular, apoptosis genes are differentially co-expressed between humans and chimpanzees. Our simulation studies and applications show that module preservation statistics are useful for studying differences between the modular structure of networks. Data, R software and accompanying tutorials can be downloaded from the following webpage: http

  8. Difference sets connecting algebra, combinatorics, and geometry

    CERN Document Server

    Moore, Emily H

    2013-01-01

    Difference sets belong both to group theory and to combinatorics. Studying them requires tools from geometry, number theory, and representation theory. This book lays a foundation for these topics, including a primer on representations and characters of finite groups. It makes the research literature on difference sets accessible to students who have studied linear algebra and abstract algebra, and it prepares them to do their own research. This text is suitable for an undergraduate capstone course, since it illuminates the many links among topics that the students have already studied. To this end, almost every chapter ends with a coda highlighting the main ideas and emphasizing mathematical connections. This book can also be used for self-study by anyone interested in these connections and concrete examples. An abundance of exercises, varying from straightforward to challenging, invites the reader to solve puzzles, construct proofs, and investigate problems--by hand or on a computer. Hints and solutions are...

  9. Towards Fast Tracking of the Keyhole Geometry

    Science.gov (United States)

    Brock, C.; Hohenstein, R.; Schmidt, M.

    We describe a sensor principle permitting the fast online measurement of the position of the optical process emissions in deep penetration laser welding. Experiments show a strong correlation between the position of the vapour plume and the keyhole geometry, demonstrated here by varying the penetration depth of the weld. In order to achieve an absolute position measurement, the sensor was calibrated using a light source with well defined characteristics. The setup for the calibration measurements and the corresponding data evaluation methods are discussed. The precision of the calibration with a green LED is 6 μm in lateral and 55 μm in axial direction, for a working distance of 200 mm.

  10. The Idea of Order at Geometry Class.

    Science.gov (United States)

    Rishel, Thomas

    The idea of order in geometry is explored using the experience of assignments given to undergraduates in a college geometry course "From Space to Geometry." Discussed are the definition of geometry, and earth measurement using architecture, art, and common experience. This discussion concludes with a consideration of the question of whether…

  11. Teaching Spatial Geometry in a Virtual World

    DEFF Research Database (Denmark)

    Förster, Klaus-Tycho

    2017-01-01

    Spatial geometry is one of the fundamental mathematical building blocks of any engineering education. However, it is overshadowed by planar geometry in the curriculum between playful early primary education and later analytical geometry, leaving a multi-year gap where spatial geometry is absent...

  12. Analogical Reasoning in Geometry Education

    Science.gov (United States)

    Magdas, Ioana

    2015-01-01

    The analogical reasoning isn't used only in mathematics but also in everyday life. In this article we approach the analogical reasoning in Geometry Education. The novelty of this article is a classification of geometrical analogies by reasoning type and their exemplification. Our classification includes: analogies for understanding and setting a…

  13. Normal forms in Poisson geometry

    NARCIS (Netherlands)

    Marcut, I.T.

    2013-01-01

    The structure of Poisson manifolds is highly nontrivial even locally. The first important result in this direction is Conn's linearization theorem around fixed points. One of the main results of this thesis (Theorem 2) is a normal form theorem in Poisson geometry, which is the Poisson-geometric

  14. Exploring Bundling Theory with Geometry

    Science.gov (United States)

    Eckalbar, John C.

    2006-01-01

    The author shows how instructors might successfully introduce students in principles and intermediate microeconomic theory classes to the topic of bundling (i.e., the selling of two or more goods as a package, rather than separately). It is surprising how much students can learn using only the tools of high school geometry. To be specific, one can…

  15. Stochastic Modelling of River Geometry

    DEFF Research Database (Denmark)

    Sørensen, John Dalsgaard; Schaarup-Jensen, K.

    1996-01-01

    Numerical hydrodynamic river models are used in a large number of applications to estimate critical events for rivers. These estimates are subject to a number of uncertainties. In this paper, the problem to evaluate these estimates using probabilistic methods is considered. Stochastic models for ...... for river geometries are formulated and a coupling between hydraulic computational methods and numerical reliability methods is presented....

  16. Matter in toy dynamical geometries

    NARCIS (Netherlands)

    Konopka, T.J.

    2009-01-01

    One of the objectives of theories describing quantum dynamical geometry is to compute expectation values of geometrical observables. The results of such computations can be affected by whether or not matter is taken into account. It is thus important to understand to what extent and to what effect

  17. Let??s teach geometry

    OpenAIRE

    Ca??adas, Mar??a C.; Molina, Marta; Gallardo, Sandra; Mart??nez-Santaolalla, Manuel J.; Pe??as, Mar??a

    2010-01-01

    In this work we present an activity for High School students in which various mathematical concepts of plane and spatial geometry are involved. The final objective of the proposed tasks is constructing a particular polyhedron, the cube, by using a modality of origami called modular origami.

  18. General Relativity: Geometry Meets Physics

    Science.gov (United States)

    Thomsen, Dietrick E.

    1975-01-01

    Observing the relationship of general relativity and the geometry of space-time, the author questions whether the rest of physics has geometrical explanations. As a partial answer he discusses current research on subatomic particles employing geometric transformations, and cites the existence of geometrical definitions of physical quantities such…

  19. Learners engaging with transformation geometry

    African Journals Online (AJOL)

    participants engaged in investigative semi-structured interviews with the resear- chers. ... Keywords: analysis; conversions; transformation geometry; transformations; treatments .... semiotic systems of representation is not only to designate mathematical objects or to com- municate but also to ... Research design. We believe ...

  20. Multivariable calculus and differential geometry

    CERN Document Server

    Walschap, Gerard

    2015-01-01

    This text is a modern in-depth study of the subject that includes all the material needed from linear algebra. It then goes on to investigate topics in differential geometry, such as manifolds in Euclidean space, curvature, and the generalization of the fundamental theorem of calculus known as Stokes' theorem.

  1. College geometry a unified development

    CERN Document Server

    Kay, David C

    2011-01-01

    ""The book is a comprehensive textbook on basic geometry. … Key features of the book include numerous figures and many problems, more than half of which come with hints or even complete solutions. Frequent historical comments add to making the reading a pleasant one.""-Michael Joswig, Zentralblatt MATH 1273

  2. Geometry.

    Science.gov (United States)

    Mahaffey, Michael L.

    One of a series of experimental units for children at the preschool level, this booklet deals with geometric concepts. A unit on volume and a unit on linear measurement are covered; for each unit a discussion of mathematical objectives, a list of materials needed, and a sequence of learning activities are provided. Directions are specified for the…

  3. Geometri

    DEFF Research Database (Denmark)

    Byg din egen boomerang, kast den, se den flyve, forstå hvorfor og hvordan den vender tilbage, og grib den. Det handler om opdriften på vingerne når du flyver, men det handler også og allermest om den mærkværdige gyroskop-effekt, du bruger til at holde balancen, når du kører på cykel. Vi vil bruge...

  4. Discrete differential geometry. Consistency as integrability

    OpenAIRE

    Bobenko, Alexander I.; Suris, Yuri B.

    2005-01-01

    A new field of discrete differential geometry is presently emerging on the border between differential and discrete geometry. Whereas classical differential geometry investigates smooth geometric shapes (such as surfaces), and discrete geometry studies geometric shapes with finite number of elements (such as polyhedra), the discrete differential geometry aims at the development of discrete equivalents of notions and methods of smooth surface theory. Current interest in this field derives not ...

  5. Precision and reproducibility in AMS radiocarbon measurements.

    Energy Technology Data Exchange (ETDEWEB)

    Hotchkis, M A; Fink, D; Hua, Q; Jacobsen, G E; Lawson, E M; Smith, A M; Tuniz, C [Australian Nuclear Science and Technology Organisation, Lucas Heights, NSW (Australia)

    1997-12-31

    Accelerator Mass Spectrometry (AMS) is a technique by which rare radioisotopes such as {sup 14}C can be measured at environmental levels with high efficiency. Instead of detecting radioactivity, which is very weak for long-lived environmental radioisotopes, atoms are counted directly. The sample is placed in an ion source, from which a negative ion beam of the atoms of interest is extracted, mass analysed, and injected into a tandem accelerator. After stripping to positive charge states in the accelerator HV terminal, the ions are further accelerated, analysed with magnetic and electrostatic devices and counted in a detector. An isotopic ratio is derived from the number of radioisotope atoms counted in a given time and the beam current of a stable isotope of the same element, measured after the accelerator. For radiocarbon, {sup 14}C/{sup 13}C ratios are usually measured, and the ratio of an unknown sample is compared to that of a standard. The achievable precision for such ratio measurements is limited primarily by {sup 14}C counting statistics and also by a variety of factors related to accelerator and ion source stability. At the ANTARES AMS facility at Lucas Heights Research Laboratories we are currently able to measure {sup 14}C with 0.5% precision. In the two years since becoming operational, more than 1000 {sup 14}C samples have been measured. Recent improvements in precision for {sup 14}C have been achieved with the commissioning of a 59 sample ion source. The measurement system, from sample changing to data acquisition, is under common computer control. These developments have allowed a new regime of automated multi-sample processing which has impacted both on the system throughput and the measurement precision. We have developed data evaluation methods at ANTARES which cross-check the self-consistency of the statistical analysis of our data. Rigorous data evaluation is invaluable in assessing the true reproducibility of the measurement system and aids in

  6. Precision and reproducibility in AMS radiocarbon measurements.

    Energy Technology Data Exchange (ETDEWEB)

    Hotchkis, M.A.; Fink, D.; Hua, Q.; Jacobsen, G.E.; Lawson, E. M.; Smith, A.M.; Tuniz, C. [Australian Nuclear Science and Technology Organisation, Lucas Heights, NSW (Australia)

    1996-12-31

    Accelerator Mass Spectrometry (AMS) is a technique by which rare radioisotopes such as {sup 14}C can be measured at environmental levels with high efficiency. Instead of detecting radioactivity, which is very weak for long-lived environmental radioisotopes, atoms are counted directly. The sample is placed in an ion source, from which a negative ion beam of the atoms of interest is extracted, mass analysed, and injected into a tandem accelerator. After stripping to positive charge states in the accelerator HV terminal, the ions are further accelerated, analysed with magnetic and electrostatic devices and counted in a detector. An isotopic ratio is derived from the number of radioisotope atoms counted in a given time and the beam current of a stable isotope of the same element, measured after the accelerator. For radiocarbon, {sup 14}C/{sup 13}C ratios are usually measured, and the ratio of an unknown sample is compared to that of a standard. The achievable precision for such ratio measurements is limited primarily by {sup 14}C counting statistics and also by a variety of factors related to accelerator and ion source stability. At the ANTARES AMS facility at Lucas Heights Research Laboratories we are currently able to measure {sup 14}C with 0.5% precision. In the two years since becoming operational, more than 1000 {sup 14}C samples have been measured. Recent improvements in precision for {sup 14}C have been achieved with the commissioning of a 59 sample ion source. The measurement system, from sample changing to data acquisition, is under common computer control. These developments have allowed a new regime of automated multi-sample processing which has impacted both on the system throughput and the measurement precision. We have developed data evaluation methods at ANTARES which cross-check the self-consistency of the statistical analysis of our data. Rigorous data evaluation is invaluable in assessing the true reproducibility of the measurement system and aids in

  7. Progress on MEVVA source VARIS at GSI

    Science.gov (United States)

    Adonin, A.; Hollinger, R.

    2018-05-01

    For the last few years, the development of the VARIS (vacuum arc ion source) was concentrated on several aspects. One of them was the production of high current ion beams of heavy metals such as Au, Pb, and Bi. The requested ion charge state for these ion species is 4+. This is quite challenging to produce in vacuum arc driven sources for reasonable beam pulse length (>120 µs) due to the physical properties of these elements. However, the situation can be dramatically improved by using the composite materials or alloys with enhanced physical properties of the cathodes. Another aspect is an increase of the beam brilliance for intense U4+ beams by the optimization of the geometry of the extraction system. A new 7-hole triode extraction system allows an increase of the extraction voltage from 30 kV to 40 kV and also reduces the outer aperture of the extracted ion beam. Thus, a record beam brilliance for the U4+ beam in front of the RFQ (Radio-Frequency Quadrupole) has been achieved, exceeding the RFQ space charge limit for an ion current of 15 mA. Several new projectiles in the middle-heavy region have been successfully developed from VARIS to fulfill the requirements of the future FAIR (Facility for Antiproton and Ion Research) programs. An influence of an auxiliary gas on the production performance of certain ion charge states as well as on operation stability has been investigated. The optimization of the ion source parameters for a maximum production efficiency and highest particle current in front of the RFQ has been performed. The next important aspect of the development will be the increase of the operation repetition rate of VARIS for all elements especially for uranium to 2.7 Hz in order to provide the maximum availability of high current ion beams for future FAIR experiments.

  8. The intersubject and intrasubject reproducibility of FMRI activation during three encoding tasks: implications for clinical applications

    Energy Technology Data Exchange (ETDEWEB)

    Harrington, Greg S. [Virginia Commonwealth University, Department of Radiology, Richmond, VA (United States); Tomaszewski Farias, Sarah [University of California at Davis, Department of Neurology, Sacramento (United States); Buonocore, Michael H. [University of California at Davis, Department of Radiology, Sacramento (United States); Yonelinas, Andrew P. [University of California at Davis, Department of Psychology, Davis (United States)

    2006-07-15

    The goal of the present study was to evaluate the inter- and intrasubject reproducibility of FMRI activation for three memory encoding tasks previously used in the context of presurgical functional mapping. The primary region of interest (ROI) was the medial temporal lobe (MTL). Comparative ROIs included the inferior frontal and fusiform gyri which are less affected by susceptibility-induced signal losses than the MTL regions. Eighteen subjects were scanned using three memory encoding paradigms: word-pair, pattern, and scene encoding. Nine subjects underwent repeat scanning. Intersubject reproducibility of FMRI activation was evaluated by examining the percent of subjects who showed activation within a given ROI and the range to which individual laterality indices (LIs) varied from the mean. Intrasubject test-retest reproducibility was evaluated by examining the LI test-retest correlation, the average difference between LIs from two separate imaging sessions, and concordance ratios of activation volumes (R{sub volume} and R{sub overlap}). For scene encoding the reproducibility of activation volume and LIs within the MTL were as good as or better than the reproducibility within the fusiform and inferior frontal ROIs. For pattern encoding and word-pair encoding, the reproducibility of activation volume and LIs within the MTL tended to be worse compared to the fusiform and inferior frontal ROIs. The differences in FMRI reproducibility appeared more dependent on the task than the susceptibility effects. The results of this study suggest that FMRI-based assessment of the neural substrates of memory using a scene encoding task may be a useful clinical tool. (orig.)

  9. The intersubject and intrasubject reproducibility of FMRI activation during three encoding tasks: implications for clinical applications

    International Nuclear Information System (INIS)

    Harrington, Greg S.; Tomaszewski Farias, Sarah; Buonocore, Michael H.; Yonelinas, Andrew P.

    2006-01-01

    The goal of the present study was to evaluate the inter- and intrasubject reproducibility of FMRI activation for three memory encoding tasks previously used in the context of presurgical functional mapping. The primary region of interest (ROI) was the medial temporal lobe (MTL). Comparative ROIs included the inferior frontal and fusiform gyri which are less affected by susceptibility-induced signal losses than the MTL regions. Eighteen subjects were scanned using three memory encoding paradigms: word-pair, pattern, and scene encoding. Nine subjects underwent repeat scanning. Intersubject reproducibility of FMRI activation was evaluated by examining the percent of subjects who showed activation within a given ROI and the range to which individual laterality indices (LIs) varied from the mean. Intrasubject test-retest reproducibility was evaluated by examining the LI test-retest correlation, the average difference between LIs from two separate imaging sessions, and concordance ratios of activation volumes (R volume and R overlap ). For scene encoding the reproducibility of activation volume and LIs within the MTL were as good as or better than the reproducibility within the fusiform and inferior frontal ROIs. For pattern encoding and word-pair encoding, the reproducibility of activation volume and LIs within the MTL tended to be worse compared to the fusiform and inferior frontal ROIs. The differences in FMRI reproducibility appeared more dependent on the task than the susceptibility effects. The results of this study suggest that FMRI-based assessment of the neural substrates of memory using a scene encoding task may be a useful clinical tool. (orig.)

  10. Numerically robust geometry engine for compound solid geometries

    International Nuclear Information System (INIS)

    Vlachoudis, V.; Sinuela-Pastor, D.

    2013-01-01

    Monte Carlo programs heavily rely on a fast and numerically robust solid geometry engines. However the success of solid modeling, depends on facilities for specifying and editing parameterized models through a user-friendly graphical front-end. Such a user interface has to be fast enough in order to be interactive for 2D and/or 3D displays, but at the same time numerically robust in order to display possible modeling errors at real time that could be critical for the simulation. The graphical user interface Flair for FLUKA currently employs such an engine where special emphasis has been given on being fast and numerically robust. The numerically robustness is achieved by a novel method of estimating the floating precision of the operations, which dynamically adapts all the decision operations accordingly. Moreover a predictive caching mechanism is ensuring that logical errors in the geometry description are found online, without compromising the processing time by checking all regions. (authors)

  11. Reproducible microtechnique for measuring stimulation of human lymphocytes by phytohemagglutinin

    International Nuclear Information System (INIS)

    Willard, K.E.; Lloyd, E.L.

    1977-01-01

    Methods based on tritiated thymidine incorporation were used for studies on the blastogenic transformation of human lymphocytes by phytohemagglutinin (PHA) in vitro. A stimulation index was calculated as the ratio of the radioactivity measured in lymphocytes to which PHA had been added to that in similar samples from which PHA was omitted. The stimulation indices have been shown to be reproducible to within 10 percent for the same individuals sampled at different times. The maximum mitotic indices for normal control subjects varied from 249 to 340. Seven to 11 different concentrations of PHA were used with each blood sample tested. The maximum index occurred, for most samples, at concentrations of PHA between 0.0625 μl and 1.0 μl/well. A systematic decrease in the maximum mitotic indices was found with increasing age in the range tested (19 to 58 years). Measurements of the single radium case 03 to 416, aged 70, with a residual body burden of 1.0 μCi 226 Ra gave a maximum value for the mitotic index of 44 at a concentration of 0.25 μl/well. This was a factor of 5 less than the value expected from our normal control subjects

  12. Finding reproducible cluster partitions for the k-means algorithm.

    Science.gov (United States)

    Lisboa, Paulo J G; Etchells, Terence A; Jarman, Ian H; Chambers, Simon J

    2013-01-01

    K-means clustering is widely used for exploratory data analysis. While its dependence on initialisation is well-known, it is common practice to assume that the partition with lowest sum-of-squares (SSQ) total i.e. within cluster variance, is both reproducible under repeated initialisations and also the closest that k-means can provide to true structure, when applied to synthetic data. We show that this is generally the case for small numbers of clusters, but for values of k that are still of theoretical and practical interest, similar values of SSQ can correspond to markedly different cluster partitions. This paper extends stability measures previously presented in the context of finding optimal values of cluster number, into a component of a 2-d map of the local minima found by the k-means algorithm, from which not only can values of k be identified for further analysis but, more importantly, it is made clear whether the best SSQ is a suitable solution or whether obtaining a consistently good partition requires further application of the stability index. The proposed method is illustrated by application to five synthetic datasets replicating a real world breast cancer dataset with varying data density, and a large bioinformatics dataset.

  13. Comparison of Microinstability Properties for Stellarator Magnetic Geometries

    International Nuclear Information System (INIS)

    Rewoldt, G.; Ku, L.-P.; Tang, W.M.

    2005-01-01

    The microinstability properties of seven distinct magnetic geometries corresponding to different operating and planned stellarators with differing symmetry properties are compared. Specifically, the kinetic stability properties (linear growth rates and real frequencies) of toroidal microinstabilities (driven by ion temperature gradients and trapped-electron dynamics) are compared, as parameters are varied. The familiar ballooning representation is used to enable efficient treatment of the spatial variations along the equilibrium magnetic field lines. These studies provide useful insights for understanding the differences in the relative strengths of the instabilities caused by the differing localizations of good and bad magnetic curvature and of the presence of trapped particles. The associated differences in growth rates due to magnetic geometry are large for small values of the temperature gradient parameter n identical to d ln T/d ln n, whereas for large values of n, the mode is strongly unstable for all of the different magnetic geometries

  14. Guidelines for Reproducibly Building and Simulating Systems Biology Models.

    Science.gov (United States)

    Medley, J Kyle; Goldberg, Arthur P; Karr, Jonathan R

    2016-10-01

    Reproducibility is the cornerstone of the scientific method. However, currently, many systems biology models cannot easily be reproduced. This paper presents methods that address this problem. We analyzed the recent Mycoplasma genitalium whole-cell (WC) model to determine the requirements for reproducible modeling. We determined that reproducible modeling requires both repeatable model building and repeatable simulation. New standards and simulation software tools are needed to enhance and verify the reproducibility of modeling. New standards are needed to explicitly document every data source and assumption, and new deterministic parallel simulation tools are needed to quickly simulate large, complex models. We anticipate that these new standards and software will enable researchers to reproducibly build and simulate more complex models, including WC models.

  15. Code subspaces for LLM geometries

    Science.gov (United States)

    Berenstein, David; Miller, Alexandra

    2018-03-01

    We consider effective field theory around classical background geometries with a gauge theory dual, specifically those in the class of LLM geometries. These are dual to half-BPS states of N= 4 SYM. We find that the language of code subspaces is natural for discussing the set of nearby states, which are built by acting with effective fields on these backgrounds. This work extends our previous work by going beyond the strict infinite N limit. We further discuss how one can extract the topology of the state beyond N→∞ and find that, as before, uncertainty and entanglement entropy calculations provide a useful tool to do so. Finally, we discuss obstructions to writing down a globally defined metric operator. We find that the answer depends on the choice of reference state that one starts with. Therefore, within this setup, there is ambiguity in trying to write an operator that describes the metric globally.

  16. Euclidean distance geometry an introduction

    CERN Document Server

    Liberti, Leo

    2017-01-01

    This textbook, the first of its kind, presents the fundamentals of distance geometry:  theory, useful methodologies for obtaining solutions, and real world applications. Concise proofs are given and step-by-step algorithms for solving fundamental problems efficiently and precisely are presented in Mathematica®, enabling the reader to experiment with concepts and methods as they are introduced. Descriptive graphics, examples, and problems, accompany the real gems of the text, namely the applications in visualization of graphs, localization of sensor networks, protein conformation from distance data, clock synchronization protocols, robotics, and control of unmanned underwater vehicles, to name several.  Aimed at intermediate undergraduates, beginning graduate students, researchers, and practitioners, the reader with a basic knowledge of linear algebra will gain an understanding of the basic theories of distance geometry and why they work in real life.

  17. The geometry of celestial mechanics

    CERN Document Server

    Geiges, Hansjörg

    2016-01-01

    Celestial mechanics is the branch of mathematical astronomy devoted to studying the motions of celestial bodies subject to the Newtonian law of gravitation. This mathematical introductory textbook reveals that even the most basic question in celestial mechanics, the Kepler problem, leads to a cornucopia of geometric concepts: conformal and projective transformations, spherical and hyperbolic geometry, notions of curvature, and the topology of geodesic flows. For advanced undergraduate and beginning graduate students, this book explores the geometric concepts underlying celestial mechanics and is an ideal companion for introductory courses. The focus on the history of geometric ideas makes it perfect supplementary reading for students in elementary geometry and topology. Numerous exercises, historical notes and an extensive bibliography provide all the contextual information required to gain a solid grounding in celestial mechanics.

  18. Differential geometry and mathematical physics

    CERN Document Server

    Rudolph, Gerd

    Starting from an undergraduate level, this book systematically develops the basics of • Calculus on manifolds, vector bundles, vector fields and differential forms, • Lie groups and Lie group actions, • Linear symplectic algebra and symplectic geometry, • Hamiltonian systems, symmetries and reduction, integrable systems and Hamilton-Jacobi theory. The topics listed under the first item are relevant for virtually all areas of mathematical physics. The second and third items constitute the link between abstract calculus and the theory of Hamiltonian systems. The last item provides an introduction to various aspects of this theory, including Morse families, the Maslov class and caustics. The book guides the reader from elementary differential geometry to advanced topics in the theory of Hamiltonian systems with the aim of making current research literature accessible. The style is that of a mathematical textbook,with full proofs given in the text or as exercises. The material is illustrated by numerous d...

  19. Grassmannian geometry of scattering amplitudes

    CERN Document Server

    Arkani-Hamed, Nima; Cachazo, Freddy; Goncharov, Alexander; Postnikov, Alexander; Trnka, Jaroslav

    2016-01-01

    Outlining a revolutionary reformulation of the foundations of perturbative quantum field theory, this book is a self-contained and authoritative analysis of the application of this new formulation to the case of planar, maximally supersymmetric Yang–Mills theory. The book begins by deriving connections between scattering amplitudes and Grassmannian geometry from first principles before introducing novel physical and mathematical ideas in a systematic manner accessible to both physicists and mathematicians. The principle players in this process are on-shell functions which are closely related to certain sub-strata of Grassmannian manifolds called positroids - in terms of which the classification of on-shell functions and their relations becomes combinatorially manifest. This is an essential introduction to the geometry and combinatorics of the positroid stratification of the Grassmannian and an ideal text for advanced students and researchers working in the areas of field theory, high energy physics, and the...

  20. Foliation theory in algebraic geometry

    CERN Document Server

    McKernan, James; Pereira, Jorge

    2016-01-01

    Featuring a blend of original research papers and comprehensive surveys from an international team of leading researchers in the thriving fields of foliation theory, holomorphic foliations, and birational geometry, this book presents the proceedings of the conference "Foliation Theory in Algebraic Geometry," hosted by the Simons Foundation in New York City in September 2013.  Topics covered include: Fano and del Pezzo foliations; the cone theorem and rank one foliations; the structure of symmetric differentials on a smooth complex surface and a local structure theorem for closed symmetric differentials of rank two; an overview of lifting symmetric differentials from varieties with canonical singularities and the applications to the classification of AT bundles on singular varieties; an overview of the powerful theory of the variety of minimal rational tangents introduced by Hwang and Mok; recent examples of varieties which are hyperbolic and yet the Green-Griffiths locus is the whole of X; and a classificati...

  1. Groups and Geometries : Siena Conference

    CERN Document Server

    Kantor, William; Lunardon, Guglielmo; Pasini, Antonio; Tamburini, Maria

    1998-01-01

    On September 1-7, 1996 a conference on Groups and Geometries took place in lovely Siena, Italy. It brought together experts and interested mathematicians from numerous countries. The scientific program centered around invited exposi­ tory lectures; there also were shorter research announcements, including talks by younger researchers. The conference concerned a broad range of topics in group theory and geometry, with emphasis on recent results and open problems. Special attention was drawn to the interplay between group-theoretic methods and geometric and combinatorial ones. Expanded versions of many of the talks appear in these Proceedings. This volume is intended to provide a stimulating collection of themes for a broad range of algebraists and geometers. Among those themes, represented within the conference or these Proceedings, are aspects of the following: 1. the classification of finite simple groups, 2. the structure and properties of groups of Lie type over finite and algebraically closed fields of f...

  2. Needle decompositions in Riemannian geometry

    CERN Document Server

    Klartag, Bo'az

    2017-01-01

    The localization technique from convex geometry is generalized to the setting of Riemannian manifolds whose Ricci curvature is bounded from below. In a nutshell, the author's method is based on the following observation: When the Ricci curvature is non-negative, log-concave measures are obtained when conditioning the Riemannian volume measure with respect to a geodesic foliation that is orthogonal to the level sets of a Lipschitz function. The Monge mass transfer problem plays an important role in the author's analysis.

  3. Systematics of IIB spinorial geometry

    OpenAIRE

    Gran, U.; Gutowski, J.; Papadopoulos, G.; Roest, D.

    2005-01-01

    We reduce the classification of all supersymmetric backgrounds of IIB supergravity to the evaluation of the Killing spinor equations and their integrability conditions, which contain the field equations, on five types of spinors. This extends the work of [hep-th/0503046] to IIB supergravity. We give the expressions of the Killing spinor equations on all five types of spinors. In this way, the Killing spinor equations become a linear system for the fluxes, geometry and spacetime derivatives of...

  4. Geometry Dependence of Stellarator Turbulence

    International Nuclear Information System (INIS)

    Mynick, H.E.; Xanthopoulos, P.; Boozer, A.H.

    2009-01-01

    Using the nonlinear gyrokinetic code package GENE/GIST, we study the turbulent transport in a broad family of stellarator designs, to understand the geometry-dependence of the microturbulence. By using a set of flux tubes on a given flux surface, we construct a picture of the 2D structure of the microturbulence over that surface, and relate this to relevant geometric quantities, such as the curvature, local shear, and effective potential in the Schrodinger-like equation governing linear drift modes

  5. Superbanana orbits in stellarator geometries

    International Nuclear Information System (INIS)

    Derr, J.A.; Shohet, J.L.

    1979-04-01

    The presence of superbanana orbit types localized to either the interior or the exterior of stellarators and torsatrons is numerically investigated for 3.5 MeV alpha particles. The absence of the interior superbanana in both geometries is found to be due to non-conservation of the action. Exterior superbananas are found in the stellarator only, as a consequence of the existence of closed helical magnetic wells. No superbananas of either type are found in the torsatron

  6. Turtle geometry the Python way

    OpenAIRE

    Battle, S.

    2014-01-01

    An introduction to coding using Python’s on-screen ‘turtle’ that can be commanded with a few simple instructions including forward, backward, left and right. The turtle leaves a trace that can be used to draw geometric figures. This workshop is aimed at beginners of all ages. The aim is to learn a smattering of programming and a little bit of geometry in a fun way.

  7. Topics in modern differential geometry

    CERN Document Server

    Verstraelen, Leopold

    2017-01-01

    A variety of introductory articles is provided on a wide range of topics, including variational problems on curves and surfaces with anisotropic curvature. Experts in the fields of Riemannian, Lorentzian and contact geometry present state-of-the-art reviews of their topics. The contributions are written on a graduate level and contain extended bibliographies. The ten chapters are the result of various doctoral courses which were held in 2009 and 2010 at universities in Leuven, Serbia, Romania and Spain.

  8. Intrinsic and extrinsic geometries of a tidally deformed black hole

    International Nuclear Information System (INIS)

    Vega, Ian; Poisson, Eric; Massey, Ryan

    2011-01-01

    A description of the event horizon of a perturbed Schwarzschild black hole is provided in terms of the intrinsic and extrinsic geometries of the null hypersurface. This description relies on a Gauss-Codazzi theory of null hypersurfaces embedded in spacetime, which extends the standard theory of spacelike and timelike hypersurfaces involving the first and second fundamental forms. We show that the intrinsic geometry of the event horizon is invariant under a reparameterization of the null generators, and that the extrinsic geometry depends on the parameterization. Stated differently, we show that while the extrinsic geometry depends on the choice of gauge, the intrinsic geometry is gauge invariant. We apply the formalism to solutions to the vacuum field equations that describe a tidally deformed black hole. In a first instance, we consider a slowly varying, quadrupolar tidal field imposed on the black hole, and in a second instance, we examine the tide raised during a close parabolic encounter between the black hole and a small orbiting body.

  9. Computational geometry for reactor applications

    International Nuclear Information System (INIS)

    Brown, F.B.; Bischoff, F.G.

    1988-01-01

    Monte Carlo codes for simulating particle transport involve three basic computational sections: a geometry package for locating particles and computing distances to regional boundaries, a physics package for analyzing interactions between particles and problem materials, and an editing package for determining event statistics and overall results. This paper describes the computational geometry methods in RACER, a vectorized Monte Carlo code used for reactor physics analysis, so that comparisons may be made with techniques used in other codes. The principal applications for RACER are eigenvalue calculations and power distributions associated with reactor core physics analysis. Successive batches of neutrons are run until convergence and acceptable confidence intervals are obtained, with typical problems involving >10 6 histories. As such, the development of computational geometry methods has emphasized two basic needs: a flexible but compact geometric representation that permits accurate modeling of reactor core details and efficient geometric computation to permit very large numbers of histories to be run. The current geometric capabilities meet these needs effectively, supporting a variety of very large and demanding applications

  10. Number theory III Diophantine geometry

    CERN Document Server

    1991-01-01

    From the reviews of the first printing of this book, published as Volume 60 of the Encyclopaedia of Mathematical Sciences: "Between number theory and geometry there have been several stimulating influences, and this book records of these enterprises. This author, who has been at the centre of such research for many years, is one of the best guides a reader can hope for. The book is full of beautiful results, open questions, stimulating conjectures and suggestions where to look for future developments. This volume bears witness of the broad scope of knowledge of the author, and the influence of several people who have commented on the manuscript before publication ... Although in the series of number theory, this volume is on diophantine geometry, and the reader will notice that algebraic geometry is present in every chapter. ... The style of the book is clear. Ideas are well explained, and the author helps the reader to pass by several technicalities. Reading and rereading this book I noticed that the topics ...

  11. Riemannian geometry and geometric analysis

    CERN Document Server

    Jost, Jürgen

    2017-01-01

    This established reference work continues to provide its readers with a gateway to some of the most interesting developments in contemporary geometry. It offers insight into a wide range of topics, including fundamental concepts of Riemannian geometry, such as geodesics, connections and curvature; the basic models and tools of geometric analysis, such as harmonic functions, forms, mappings, eigenvalues, the Dirac operator and the heat flow method; as well as the most important variational principles of theoretical physics, such as Yang-Mills, Ginzburg-Landau or the nonlinear sigma model of quantum field theory. The present volume connects all these topics in a systematic geometric framework. At the same time, it equips the reader with the working tools of the field and enables her or him to delve into geometric research.  The 7th edition has been systematically reorganized and updated. Almost no page has been left unchanged. It also includes new material, for instance on symplectic geometry, as well as the B...

  12. Donaldson invariants in algebraic geometry

    International Nuclear Information System (INIS)

    Goettsche, L.

    2000-01-01

    In these lectures I want to give an introduction to the relation of Donaldson invariants with algebraic geometry: Donaldson invariants are differentiable invariants of smooth compact 4-manifolds X, defined via moduli spaces of anti-self-dual connections. If X is an algebraic surface, then these moduli spaces can for a suitable choice of the metric be identified with moduli spaces of stable vector bundles on X. This can be used to compute Donaldson invariants via methods of algebraic geometry and has led to a lot of activity on moduli spaces of vector bundles and coherent sheaves on algebraic surfaces. We will first recall the definition of the Donaldson invariants via gauge theory. Then we will show the relation between moduli spaces of anti-self-dual connections and moduli spaces of vector bundles on algebraic surfaces, and how this makes it possible to compute Donaldson invariants via algebraic geometry methods. Finally we concentrate on the case that the number b + of positive eigenvalues of the intersection form on the second homology of the 4-manifold is 1. In this case the Donaldson invariants depend on the metric (or in the algebraic geometric case on the polarization) via a system of walls and chambers. We will study the change of the invariants under wall-crossing, and use this in particular to compute the Donaldson invariants of rational algebraic surfaces. (author)

  13. Aspects of differential geometry II

    CERN Document Server

    Gilkey, Peter

    2015-01-01

    Differential Geometry is a wide field. We have chosen to concentrate upon certain aspects that are appropriate for an introduction to the subject; we have not attempted an encyclopedic treatment. Book II deals with more advanced material than Book I and is aimed at the graduate level. Chapter 4 deals with additional topics in Riemannian geometry. Properties of real analytic curves given by a single ODE and of surfaces given by a pair of ODEs are studied, and the volume of geodesic balls is treated. An introduction to both holomorphic and Kähler geometry is given. In Chapter 5, the basic properties of de Rham cohomology are discussed, the Hodge Decomposition Theorem, Poincaré duality, and the Künneth formula are proved, and a brief introduction to the theory of characteristic classes is given. In Chapter 6, Lie groups and Lie algebras are dealt with. The exponential map, the classical groups, and geodesics in the context of a bi-invariant metric are discussed. The de Rham cohomology of compact Lie groups an...

  14. Interobserver reproducibility of radiographic evaluation of lumbar spine instability.

    Science.gov (United States)

    Segundo, Saulo de Tarso de Sá Pereira; Valesin, Edgar Santiago; Lenza, Mario; Santos, Durval do Carmo Barros; Rosemberg, Laercio Alberto; Ferretti, Mario

    2016-01-01

    To measure the interobserver reproducibility of the radiographic evaluation of lumbar spine instability. Measurements of the dynamic radiographs of the lumbar spine in lateral view were performed, evaluating the anterior translation and the angulation among the vertebral bodies. The tests were evaluated at workstations of the organization, through the Carestream Health Vue RIS (PACS), version 11.0.12.14 Inc. 2009© system. Agreement in detecting cases of radiographic instability among the observers varied from 88.1 to 94.4%, and the agreement coefficients AC1 were all above 0.8, indicating excellent agreement. The interobserver analysis performed among orthopedic surgeons with different levels of training in dynamic radiographs of the spine obtained high reproducibility and agreement. However, some factors, such as the manual method of measurement and the presence of vertebral osteophytes, might have generated a few less accurate results in this comparative evaluation of measurements. Mensurar a reprodutibilidade interobservadores da avaliação radiográfica da instabilidade da coluna lombar. Foram realizadas mensurações das radiografias dinâmicas de coluna lombar na incidência em perfil, avaliando-se a translação anterior e a angulação entre os corpos vertebrais. Os exames foram avaliados em workstations da própria instituição, por meio do sistema Vue RIS (PACS) da Carestream Health, versão 11.0.12.14 Inc. 2009©. A proporção de concordância em detecção de casos de instabilidade radiográfica entre os observadores variou de 88,1 a 94,4%, e os coeficientes de concordância AC1 estiveram todos acima de 0,8, indicando concordância excelente. A análise interobservadores realizada entre médicos ortopedistas com diferentes níveis de treinamento em radiografias dinâmicas da coluna vertebral obteve elevada reprodutibilidade e concordância. No entanto, alguns fatores, como método manual de aferição e a presença de osteófitos vertebrais, podem

  15. Stabilization of the Wave Equation with Boundary Time-Varying Delay

    Directory of Open Access Journals (Sweden)

    Hao Li

    2014-01-01

    Full Text Available We study the stabilization of the wave equation with variable coefficients in a bounded domain and a time-varying delay term in the time-varying, weakly nonlinear boundary feedbacks. By the Riemannian geometry methods and a suitable assumption of nonlinearity, we obtain the uniform decay of the energy of the closed loop system.

  16. Participant Nonnaiveté and the reproducibility of cognitive psychology.

    Science.gov (United States)

    Zwaan, Rolf A; Pecher, Diane; Paolacci, Gabriele; Bouwmeester, Samantha; Verkoeijen, Peter; Dijkstra, Katinka; Zeelenberg, René

    2017-07-25

    Many argue that there is a reproducibility crisis in psychology. We investigated nine well-known effects from the cognitive psychology literature-three each from the domains of perception/action, memory, and language, respectively-and found that they are highly reproducible. Not only can they be reproduced in online environments, but they also can be reproduced with nonnaïve participants with no reduction of effect size. Apparently, some cognitive tasks are so constraining that they encapsulate behavior from external influences, such as testing situation and prior recent experience with the experiment to yield highly robust effects.

  17. Algebraic Geometry and Number Theory Summer School

    CERN Document Server

    Sarıoğlu, Celal; Soulé, Christophe; Zeytin, Ayberk

    2017-01-01

    This lecture notes volume presents significant contributions from the “Algebraic Geometry and Number Theory” Summer School, held at Galatasaray University, Istanbul, June 2-13, 2014. It addresses subjects ranging from Arakelov geometry and Iwasawa theory to classical projective geometry, birational geometry and equivariant cohomology. Its main aim is to introduce these contemporary research topics to graduate students who plan to specialize in the area of algebraic geometry and/or number theory. All contributions combine main concepts and techniques with motivating examples and illustrative problems for the covered subjects. Naturally, the book will also be of interest to researchers working in algebraic geometry, number theory and related fields.

  18. Geometry success in 20 minutes a day

    CERN Document Server

    LLC, LearningExpress

    2014-01-01

    Whether you're new to geometry or just looking for a refresher, Geometry Success in 20 Minutes a Day offers a 20-step lesson plan that provides quick and thorough instruction in practical, critical skills. Stripped of unnecessary math jargon but bursting with geometry essentials, Geometry Success in 20 Minutes a Day: Covers all vital geometry skills, from the basic building blocks of geometry to ratio, proportion, and similarity to trigonometry and beyond Provides hundreds of practice exercises in test format Applies geometr

  19. Towards reproducible descriptions of neuronal network models.

    Directory of Open Access Journals (Sweden)

    Eilen Nordlie

    2009-08-01

    Full Text Available Progress in science depends on the effective exchange of ideas among scientists. New ideas can be assessed and criticized in a meaningful manner only if they are formulated precisely. This applies to simulation studies as well as to experiments and theories. But after more than 50 years of neuronal network simulations, we still lack a clear and common understanding of the role of computational models in neuroscience as well as established practices for describing network models in publications. This hinders the critical evaluation of network models as well as their re-use. We analyze here 14 research papers proposing neuronal network models of different complexity and find widely varying approaches to model descriptions, with regard to both the means of description and the ordering and placement of material. We further observe great variation in the graphical representation of networks and the notation used in equations. Based on our observations, we propose a good model description practice, composed of guidelines for the organization of publications, a checklist for model descriptions, templates for tables presenting model structure, and guidelines for diagrams of networks. The main purpose of this good practice is to trigger a debate about the communication of neuronal network models in a manner comprehensible to humans, as opposed to machine-readable model description languages. We believe that the good model description practice proposed here, together with a number of other recent initiatives on data-, model-, and software-sharing, may lead to a deeper and more fruitful exchange of ideas among computational neuroscientists in years to come. We further hope that work on standardized ways of describing--and thinking about--complex neuronal networks will lead the scientific community to a clearer understanding of high-level concepts in network dynamics, and will thus lead to deeper insights into the function of the brain.

  20. Long memory of financial time series and hidden Markov models with time-varying parameters

    DEFF Research Database (Denmark)

    Nystrup, Peter; Madsen, Henrik; Lindström, Erik

    Hidden Markov models are often used to capture stylized facts of daily returns and to infer the hidden state of financial markets. Previous studies have found that the estimated models change over time, but the implications of the time-varying behavior for the ability to reproduce the stylized...... facts have not been thoroughly examined. This paper presents an adaptive estimation approach that allows for the parameters of the estimated models to be time-varying. It is shown that a two-state Gaussian hidden Markov model with time-varying parameters is able to reproduce the long memory of squared...... daily returns that was previously believed to be the most difficult fact to reproduce with a hidden Markov model. Capturing the time-varying behavior of the parameters also leads to improved one-step predictions....

  1. Geometry of illumination, luminance contrast, and gloss perception

    OpenAIRE

    Leloup, Frédéric; Pointer, Michael R.; Dutré, Philip; Hanselaer, Peter

    2010-01-01

    The influence of both the geometry of illumination and luminance contrast on gloss perception has been examined using the method of paired comparison. Six achromatic glass samples having different lightness were illuminated by two light sources. Only one of these light sources was visible in reflection by the observer. By separate adjustment of the intensity of both light sources, the luminance of both the reflected image and the adjacent off-specular surroundings could be individually varied...

  2. Network geometry with flavor: From complexity to quantum geometry

    Science.gov (United States)

    Bianconi, Ginestra; Rahmede, Christoph

    2016-03-01

    Network geometry is attracting increasing attention because it has a wide range of applications, ranging from data mining to routing protocols in the Internet. At the same time advances in the understanding of the geometrical properties of networks are essential for further progress in quantum gravity. In network geometry, simplicial complexes describing the interaction between two or more nodes play a special role. In fact these structures can be used to discretize a geometrical d -dimensional space, and for this reason they have already been widely used in quantum gravity. Here we introduce the network geometry with flavor s =-1 ,0 ,1 (NGF) describing simplicial complexes defined in arbitrary dimension d and evolving by a nonequilibrium dynamics. The NGF can generate discrete geometries of different natures, ranging from chains and higher-dimensional manifolds to scale-free networks with small-world properties, scale-free degree distribution, and nontrivial community structure. The NGF admits as limiting cases both the Bianconi-Barabási models for complex networks, the stochastic Apollonian network, and the recently introduced model for complex quantum network manifolds. The thermodynamic properties of NGF reveal that NGF obeys a generalized area law opening a new scenario for formulating its coarse-grained limit. The structure of NGF is strongly dependent on the dimensionality d . In d =1 NGFs grow complex networks for which the preferential attachment mechanism is necessary in order to obtain a scale-free degree distribution. Instead, for NGF with dimension d >1 it is not necessary to have an explicit preferential attachment rule to generate scale-free topologies. We also show that NGF admits a quantum mechanical description in terms of associated quantum network states. Quantum network states evolve by a Markovian dynamics and a quantum network state at time t encodes all possible NGF evolutions up to time t . Interestingly the NGF remains fully classical but

  3. Time-varying Crash Risk

    DEFF Research Database (Denmark)

    Christoffersen, Peter; Feunoua, Bruno; Jeon, Yoontae

    We estimate a continuous-time model with stochastic volatility and dynamic crash probability for the S&P 500 index and find that market illiquidity dominates other factors in explaining the stock market crash risk. While the crash probability is time-varying, its dynamic depends only weakly on re...

  4. Eestlased Karlovy Varys / J. R.

    Index Scriptorium Estoniae

    J. R.

    2007-01-01

    Ilmar Raagi mängufilm "Klass" osaleb 42. Karlovy Vary rahvusvahelise filmifestivali võistlusprogrammis "East of the West" ja Asko Kase lühimängufilm "Zen läbi prügi" on valitud festivali kõrvalprogrammi "Forum of Independents"

  5. Esmaklassiline Karlovy Vary / Jaanus Noormets

    Index Scriptorium Estoniae

    Noormets, Jaanus

    2007-01-01

    Ilmar Raagi mängufilm "Klass" võitis 42. Karlovy Vary rahvusvahelise filmifestivalil kaks auhinda - ametliku kõrvalvõistlusprogrammi "East of the West" eripreemia "Special mention" ja Euroopa väärtfilmikinode keti Europa Cinemas preemia. Ka Asko Kase lühifilmi "Zen läbi prügi linastumisest ning teistest auhinnasaajatest ning osalejatest

  6. Optimistlik Karlovy Vary / Jaan Ruus

    Index Scriptorium Estoniae

    Ruus, Jaan, 1938-2017

    2007-01-01

    42. Karlovy Vary rahvusvahelise filmifestivali auhinnatud filmidest (žürii esimees Peter Bart). Kristallgloobuse sai Islandi-Saksamaa "Katseklaasilinn" (režii Baltasar Kormakur), parimaks režissööriks tunnistati norralane Bard Breien ("Negatiivse mõtlemise kunst"). Austraallase Michael James Rowlandi "Hea õnne teekond" sai žürii eripreemia

  7. A Whirlwind Tour of Computational Geometry.

    Science.gov (United States)

    Graham, Ron; Yao, Frances

    1990-01-01

    Described is computational geometry which used concepts and results from classical geometry, topology, combinatorics, as well as standard algorithmic techniques such as sorting and searching, graph manipulations, and linear programing. Also included are special techniques and paradigms. (KR)

  8. Optimizing solar-cell grid geometry

    Science.gov (United States)

    Crossley, A. P.

    1969-01-01

    Trade-off analysis and mathematical expressions calculate optimum grid geometry in terms of various cell parameters. Determination of the grid geometry provides proper balance between grid resistance and cell output to optimize the energy conversion process.

  9. Geometry, packing, and evolutionary paths to increased multicellular size

    Science.gov (United States)

    Jacobeen, Shane; Graba, Elyes C.; Brandys, Colin G.; Day, Thomas C.; Ratcliff, William C.; Yunker, Peter J.

    2018-05-01

    The evolutionary transition to multicellularity transformed life on earth, heralding the evolution of large, complex organisms. Recent experiments demonstrated that laboratory-evolved multicellular "snowflake yeast" readily overcome the physical barriers that limit cluster size by modifying cellular geometry [Jacobeen et al., Nat. Phys. 14, 286 (2018), 10.1038/s41567-017-0002-y]. However, it is unclear why this route to large size is observed, rather than an evolved increase in intercellular bond strength. Here, we use a geometric model of the snowflake yeast growth form to examine the geometric efficiency of increasing size by modifying geometry and bond strength. We find that changing geometry is a far more efficient route to large size than evolving increased intercellular adhesion. In fact, increasing cellular aspect ratio is on average ˜13 times more effective than increasing bond strength at increasing the number of cells in a cluster. Modifying other geometric parameters, such as the geometric arrangement of mother and daughter cells, also had larger effects on cluster size than increasing bond strength. Simulations reveal that as cells reproduce, internal stress in the cluster increases rapidly; thus, increasing bond strength provides diminishing returns in cluster size. Conversely, as cells become more elongated, cellular packing density within the cluster decreases, which substantially decreases the rate of internal stress accumulation. This suggests that geometrically imposed physical constraints may have been a key early selective force guiding the emergence of multicellular complexity.

  10. Modelling and simulation of gas explosions in complex geometries

    Energy Technology Data Exchange (ETDEWEB)

    Saeter, Olav

    1998-12-31

    This thesis presents a three-dimensional Computational Fluid Dynamics (CFD) code (EXSIM94) for modelling and simulation of gas explosions in complex geometries. It gives the theory and validates the following sub-models : (1) the flow resistance and turbulence generation model for densely packed regions, (2) the flow resistance and turbulence generation model for single objects, and (3) the quasi-laminar combustion model. It is found that a simple model for flow resistance and turbulence generation in densely packed beds is able to reproduce the medium and large scale MERGE explosion experiments of the Commission of European Communities (CEC) within a band of factor 2. The model for a single representation is found to predict explosion pressure in better agreement with the experiments with a modified k-{epsilon} model. This modification also gives a slightly improved grid independence for realistic gas explosion approaches. One laminar model is found unsuitable for gas explosion modelling because of strong grid dependence. Another laminar model is found to be relatively grid independent and to work well in harmony with the turbulent combustion model. The code is validated against 40 realistic gas explosion experiments. It is relatively grid independent in predicting explosion pressure in different offshore geometries. It can predict the influence of ignition point location, vent arrangements, different geometries, scaling effects and gas reactivity. The validation study concludes with statistical and uncertainty analyses of the code performance. 98 refs., 96 figs, 12 tabs.

  11. Reproducible diagnosis of Chronic Lymphocytic Leukemia by flow cytometry

    DEFF Research Database (Denmark)

    Rawstron, Andy C; Kreuzer, Karl-Anton; Soosapilla, Asha

    2018-01-01

    The diagnostic criteria for CLL rely on morphology and immunophenotype. Current approaches have limitations affecting reproducibility and there is no consensus on the role of new markers. The aim of this project was to identify reproducible criteria and consensus on markers recommended for the di...

  12. Genotypic variability enhances the reproducibility of an ecological study.

    Science.gov (United States)

    Milcu, Alexandru; Puga-Freitas, Ruben; Ellison, Aaron M; Blouin, Manuel; Scheu, Stefan; Freschet, Grégoire T; Rose, Laura; Barot, Sebastien; Cesarz, Simone; Eisenhauer, Nico; Girin, Thomas; Assandri, Davide; Bonkowski, Michael; Buchmann, Nina; Butenschoen, Olaf; Devidal, Sebastien; Gleixner, Gerd; Gessler, Arthur; Gigon, Agnès; Greiner, Anna; Grignani, Carlo; Hansart, Amandine; Kayler, Zachary; Lange, Markus; Lata, Jean-Christophe; Le Galliard, Jean-François; Lukac, Martin; Mannerheim, Neringa; Müller, Marina E H; Pando, Anne; Rotter, Paula; Scherer-Lorenzen, Michael; Seyhun, Rahme; Urban-Mead, Katherine; Weigelt, Alexandra; Zavattaro, Laura; Roy, Jacques

    2018-02-01

    Many scientific disciplines are currently experiencing a 'reproducibility crisis' because numerous scientific findings cannot be repeated consistently. A novel but controversial hypothesis postulates that stringent levels of environmental and biotic standardization in experimental studies reduce reproducibility by amplifying the impacts of laboratory-specific environmental factors not accounted for in study designs. A corollary to this hypothesis is that a deliberate introduction of controlled systematic variability (CSV) in experimental designs may lead to increased reproducibility. To test this hypothesis, we had 14 European laboratories run a simple microcosm experiment using grass (Brachypodium distachyon L.) monocultures and grass and legume (Medicago truncatula Gaertn.) mixtures. Each laboratory introduced environmental and genotypic CSV within and among replicated microcosms established in either growth chambers (with stringent control of environmental conditions) or glasshouses (with more variable environmental conditions). The introduction of genotypic CSV led to 18% lower among-laboratory variability in growth chambers, indicating increased reproducibility, but had no significant effect in glasshouses where reproducibility was generally lower. Environmental CSV had little effect on reproducibility. Although there are multiple causes for the 'reproducibility crisis', deliberately including genetic variability may be a simple solution for increasing the reproducibility of ecological studies performed under stringently controlled environmental conditions.

  13. Participant Nonnaiveté and the reproducibility of cognitive psychology

    NARCIS (Netherlands)

    R.A. Zwaan (Rolf); D. Pecher (Diane); G. Paolacci (Gabriele); S. Bouwmeester (Samantha); P.P.J.L. Verkoeijen (Peter); K. Dijkstra (Katinka); R. Zeelenberg (René)

    2017-01-01

    textabstractMany argue that there is a reproducibility crisis in psychology. We investigated nine well-known effects from the cognitive psychology literature—three each from the domains of perception/action, memory, and language, respectively—and found that they are highly reproducible. Not only can

  14. Reproducing Kernels and Coherent States on Julia Sets

    Energy Technology Data Exchange (ETDEWEB)

    Thirulogasanthar, K., E-mail: santhar@cs.concordia.ca; Krzyzak, A. [Concordia University, Department of Computer Science and Software Engineering (Canada)], E-mail: krzyzak@cs.concordia.ca; Honnouvo, G. [Concordia University, Department of Mathematics and Statistics (Canada)], E-mail: g_honnouvo@yahoo.fr

    2007-11-15

    We construct classes of coherent states on domains arising from dynamical systems. An orthonormal family of vectors associated to the generating transformation of a Julia set is found as a family of square integrable vectors, and, thereby, reproducing kernels and reproducing kernel Hilbert spaces are associated to Julia sets. We also present analogous results on domains arising from iterated function systems.

  15. Reproducing Kernels and Coherent States on Julia Sets

    International Nuclear Information System (INIS)

    Thirulogasanthar, K.; Krzyzak, A.; Honnouvo, G.

    2007-01-01

    We construct classes of coherent states on domains arising from dynamical systems. An orthonormal family of vectors associated to the generating transformation of a Julia set is found as a family of square integrable vectors, and, thereby, reproducing kernels and reproducing kernel Hilbert spaces are associated to Julia sets. We also present analogous results on domains arising from iterated function systems

  16. Completely reproducible description of digital sound data with cellular automata

    International Nuclear Information System (INIS)

    Wada, Masato; Kuroiwa, Jousuke; Nara, Shigetoshi

    2002-01-01

    A novel method of compressive and completely reproducible description of digital sound data by means of rule dynamics of CA (cellular automata) is proposed. The digital data of spoken words and music recorded with the standard format of a compact disk are reproduced completely by this method with use of only two rules in a one-dimensional CA without loss of information

  17. Classical An-W-geometry

    International Nuclear Information System (INIS)

    Gervais, J.L.

    1993-01-01

    By analyzing the extrinsic geometry of two dimensional surfaces chirally embedded in C P n (the C P n W-surface), we give exact treatments in various aspects of the classical W-geometry in the conformal gauge: First, the basis of tangent and normal vectors are defined at regular points of the surface, such that their infinitesimal displacements are given by connections which coincide with the vector potentials of the (conformal) A n -Toda Lax pair. Since the latter is known to be intrinsically related with the W symmetries, this gives the geometrical meaning of the A n W-Algebra. Second, W-surfaces are put in one-to-one correspondence with solutions of the conformally-reduced WZNW model, which is such that the Toda fields give the Cartan part in the Gauss decomposition of its solutions. Third, the additional variables of the Toda hierarchy are used as coordinates of C P n . This allows us to show that W-transformations may be extended as particular diffeomorphisms of this target-space. Higher-dimensional generalizations of the WZNW equations are derived and related with the Zakharov-Shabat equations of the Toda hierarchy. Fourth, singular points are studied from a global viewpoint, using our earlier observation that W-surfaces may be regarded as instantons. The global indices of the W-geometry, which are written in terms of the Toda fields, are shown to be the instanton numbers for associated mappings of W-surfaces into the Grassmannians. The relation with the singularities of W-surface is derived by combining the Toda equations with the Gauss-Bonnet theorem. (orig.)

  18. Stochastic geometry for image analysis

    CERN Document Server

    Descombes, Xavier

    2013-01-01

    This book develops the stochastic geometry framework for image analysis purpose. Two main frameworks are  described: marked point process and random closed sets models. We derive the main issues for defining an appropriate model. The algorithms for sampling and optimizing the models as well as for estimating parameters are reviewed.  Numerous applications, covering remote sensing images, biological and medical imaging, are detailed.  This book provides all the necessary tools for developing an image analysis application based on modern stochastic modeling.

  19. Magnetoelectrostatic thruster physical geometry tests

    Science.gov (United States)

    Ramsey, W. D.

    1981-01-01

    Inert gas tests are conducted with several magnetoelectrostatic containment discharge chamber geometries. The configurations tested include three discharge chamber lengths; three boundary magnet patterns; two different flux density magnet materials; hemispherical and conical shaped thrusters having different surface-to-volume ratios; and two and three grid ion optics. Argon mass utilizations of 60 to 79% are attained at 210 to 280 eV/ion in different test configurations. Short hemi thruster configurations are found to produce 70 to 92% xenon mass utilization at 185 to 220 eV/ion.

  20. Programming system for analytic geometry

    International Nuclear Information System (INIS)

    Raymond, Jacques

    1970-01-01

    After having outlined the characteristics of computing centres which do not comply with engineering tasks, notably the time required by all different tasks to be performed when developing a software (assembly, compilation, link edition, loading, run), and identified constraints specific to engineering, the author identifies the characteristics a programming system should have to suit engineering tasks. He discussed existing conversational systems and their programming language, and their main drawbacks. Then, he presents a system which aims at facilitating programming and addressing problems of analytic geometry and trigonometry

  1. The geometry of special relativity

    International Nuclear Information System (INIS)

    Parizet, Jean

    2008-01-01

    This book for students in mathematics or physics shows the interest of geometry to understand special relativity as a consequence of invariance of Maxwell equations and of constancy of the speed of light. Space-time is actually provided with a geometrical structure and a physical interpretation: at each observer are associated his own time and his own physical space in which occur events he is concerned with. This leads to a natural approach to special relativity. The Lorentz group and its algebra are then studied by using matrices and the Pauli algebra. Quaternions are also addressed

  2. Moduli spaces in algebraic geometry

    International Nuclear Information System (INIS)

    Goettsche, L.

    2000-01-01

    This volume of the new series of lecture notes of the Abdus Salam International Centre for Theoretical Physics contains the lecture notes of the School on Algebraic Geometry which took place at the Abdus Salam International Centre for Theoretical Physics from 26 July to 13 August 1999. The school consisted of 2 weeks of lecture courses and one week of conference. The topic of the school was moduli spaces. More specifically the lectures were divided into three subtopics: principal bundles on Riemann surfaces, moduli spaces of vector bundles and sheaves on projective varieties, and moduli spaces of curves

  3. Porous media geometry and transports

    CERN Document Server

    Adler, Pierre

    1992-01-01

    The goal of ""Porous Media: Geometry and Transports"" is to provide the basis of a rational and modern approach to porous media. This book emphasizes several geometrical structures (spatially periodic, fractal, and random to reconstructed) and the three major single-phase transports (diffusion, convection, and Taylor dispersion).""Porous Media"" serves various purposes. For students it introduces basic information on structure and transports. Engineers will find this book useful as a readily accessible assemblage of al the major experimental results pertaining to single-phase tr

  4. Geometry of physical dispersion relations

    International Nuclear Information System (INIS)

    Raetzel, Dennis; Rivera, Sergio; Schuller, Frederic P.

    2011-01-01

    To serve as a dispersion relation, a cotangent bundle function must satisfy three simple algebraic properties. These conditions are derived from the inescapable physical requirements that local matter field dynamics must be predictive and allow for an observer-independent notion of positive energy. Possible modifications of the standard relativistic dispersion relation are thereby severely restricted. For instance, the dispersion relations associated with popular deformations of Maxwell theory by Gambini-Pullin or Myers-Pospelov are not admissible. Dispersion relations passing the simple algebraic checks derived here correspond to physically admissible Finslerian refinements of Lorentzian geometry.

  5. Projective geometry and projective metrics

    CERN Document Server

    Busemann, Herbert

    2005-01-01

    The basic results and methods of projective and non-Euclidean geometry are indispensable for the geometer, and this book--different in content, methods, and point of view from traditional texts--attempts to emphasize that fact. Results of special theorems are discussed in detail only when they are needed to develop a feeling for the subject or when they illustrate a general method. On the other hand, an unusual amount of space is devoted to the discussion of the fundamental concepts of distance, motion, area, and perpendicularity.Topics include the projective plane, polarities and conic sectio

  6. Tropical geometry of statistical models.

    Science.gov (United States)

    Pachter, Lior; Sturmfels, Bernd

    2004-11-16

    This article presents a unified mathematical framework for inference in graphical models, building on the observation that graphical models are algebraic varieties. From this geometric viewpoint, observations generated from a model are coordinates of a point in the variety, and the sum-product algorithm is an efficient tool for evaluating specific coordinates. Here, we address the question of how the solutions to various inference problems depend on the model parameters. The proposed answer is expressed in terms of tropical algebraic geometry. The Newton polytope of a statistical model plays a key role. Our results are applied to the hidden Markov model and the general Markov model on a binary tree.

  7. Geometry of supersymmetric gauge theories

    International Nuclear Information System (INIS)

    Gieres, F.

    1988-01-01

    This monograph gives a detailed and pedagogical account of the geometry of rigid superspace and supersymmetric Yang-Mills theories. While the core of the text is concerned with the classical theory, the quantization and anomaly problem are briefly discussed following a comprehensive introduction to BRS differential algebras and their field theoretical applications. Among the treated topics are invariant forms and vector fields on superspace, the matrix-representation of the super-Poincare group, invariant connections on reductive homogeneous spaces and the supermetric approach. Various aspects of the subject are discussed for the first time in textbook and are consistently presented in a unified geometric formalism

  8. Clustering in Hilbert simplex geometry

    KAUST Repository

    Nielsen, Frank

    2017-04-03

    Clustering categorical distributions in the probability simplex is a fundamental primitive often met in applications dealing with histograms or mixtures of multinomials. Traditionally, the differential-geometric structure of the probability simplex has been used either by (i) setting the Riemannian metric tensor to the Fisher information matrix of the categorical distributions, or (ii) defining the information-geometric structure induced by a smooth dissimilarity measure, called a divergence. In this paper, we introduce a novel computationally-friendly non-Riemannian framework for modeling the probability simplex: Hilbert simplex geometry. We discuss the pros and cons of those three statistical modelings, and compare them experimentally for clustering tasks.

  9. An invitation to noncommutative geometry

    CERN Document Server

    Marcolli, Matilde

    2008-01-01

    This is the first existing volume that collects lectures on this important and fast developing subject in mathematics. The lectures are given by leading experts in the field and the range of topics is kept as broad as possible by including both the algebraic and the differential aspects of noncommutative geometry as well as recent applications to theoretical physics and number theory. Sample Chapter(s). A Walk in the Noncommutative Garden (1,639 KB). Contents: A Walk in the Noncommutative Garden (A Connes & M Marcolli); Renormalization of Noncommutative Quantum Field Theory (H Grosse & R Wulke

  10. Trends and developments in computational geometry

    NARCIS (Netherlands)

    Berg, de M.

    1997-01-01

    This paper discusses some trends and achievements in computational geometry during the past five years, with emphasis on problems related to computer graphics. Furthermore, a direction of research in computational geometry is discussed that could help in bringing the fields of computational geometry

  11. Global affine differential geometry of hypersurfaces

    CERN Document Server

    Li, An-Min; Zhao, Guosong; Hu, Zejun

    2015-01-01

    This book draws a colorful and widespread picture of global affine hypersurface theory up to the most recent state. Moreover, the recent development revealed that affine differential geometry- as differential geometry in general- has an exciting intersection area with other fields of interest, like partial differential equations, global analysis, convex geometry and Riemann surfaces.

  12. "WGL," a Web Laboratory for Geometry

    Science.gov (United States)

    Quaresma, Pedro; Santos, Vanda; Maric, Milena

    2018-01-01

    The role of information and communication technologies (ICT) in education is nowadays well recognised. The "Web Geometry Laboratory," is an e-learning, collaborative and adaptive, Web environment for geometry, integrating a well known dynamic geometry system. In a collaborative session, teachers and students, engaged in solving…

  13. Reproducing oil paint gloss in print for the purpose of creating reproductions of Old Masters

    Science.gov (United States)

    Elkhuizen, Willemijn S.; Lenseigne, Boris A. J.; Baar, Teun; Verhofstad, Wim; Tempelman, Erik; Geraedts, Jo M. P.; Dik, Joris

    2015-03-01

    In the field of Fine Art reproduction, 3D scanning plus 3D printing, combined with dedicated software, now allows to capture and reproduce the color and texture of oil paintings. However, for life-like reproduction of the material appearance of such paintings, the typical gloss and translucency must also be included, which is currently not the case. The aim of this paper is to elaborate on the challenges and results of capturing and reproducing oil paint gloss (next to texture and color) using a scanning and printing system. A sample was hand-made using oil paint and acrylic varnish, and its gloss was then reproduced. A gloss map of the painted sample was acquired using a high end DLSR camera and a simple acquisition protocol. Next, Océ High Resolution 3D printing technology was used to create samples with spatially varying gloss. For this, two different strategies were combined: (1) multilevel half-toning of the colors was used to reproduce matte color layers, and (2) varnish was half-toned on top in increasing coverage to recreate increasing gloss levels. This paper presents an overview of the state-of-the-art literature in gloss reproduction and perception, our process of reproduction as well as the visual evaluation of the quality of the created reproduction.

  14. Genetic polymorphisms in varied environments.

    Science.gov (United States)

    Powell, J R

    1971-12-03

    Thirteen experimenital populationis of Drosophila willistoni were maintained in cages, in some of which the environments were relatively constant and in others varied. After 45 weeks, the populations were assayed by gel electrophoresis for polymorphisms at 22 protein loci. The average heterozygosity per individual and the average unmber of alleles per locus were higher in populations maintained in heterogeneous environments than in populations in more constant enviroments.

  15. Computational geometry algorithms and applications

    CERN Document Server

    de Berg, Mark; Overmars, Mark; Schwarzkopf, Otfried

    1997-01-01

    Computational geometry emerged from the field of algorithms design and anal­ ysis in the late 1970s. It has grown into a recognized discipline with its own journals, conferences, and a large community of active researchers. The suc­ cess of the field as a research discipline can on the one hand be explained from the beauty of the problems studied and the solutions obtained, and, on the other hand, by the many application domains--computer graphics, geographic in­ formation systems (GIS), robotics, and others-in which geometric algorithms play a fundamental role. For many geometric problems the early algorithmic solutions were either slow or difficult to understand and implement. In recent years a number of new algorithmic techniques have been developed that improved and simplified many of the previous approaches. In this textbook we have tried to make these modem algorithmic solutions accessible to a large audience. The book has been written as a textbook for a course in computational geometry, but it can ...

  16. Tearing modes in toroidal geometry

    International Nuclear Information System (INIS)

    Connor, J.W.; Cowley, S.C.; Hastie, R.J.; Hender, T.C.; Hood, A.; Martin, T.J.

    1988-01-01

    The separation of the cylindrical tearing mode stability problem into a resistive resonant layer calculation and an external marginal ideal magnetohydrodynamic (MHD) calculation (Δ' calculation) is generalized to axisymmetric toroidal geometry. The general structure of this separation is analyzed and the marginal ideal MHD information (the toroidal generalization of Δ') required to discuss stability is isolated. This can then, in principle, be combined with relevant resonant layer calculations to determine tearing mode growth rates in realistic situations. Two examples are given: the first is an analytic treatment of toroidally coupled (m = 1, n = 1) and (m = 2, n = 1) tearing modes in a large aspect ratio torus; the second, a numerical treatment of the toroidal coupling of three tearing modes through finite pressure effects in a large aspect ratio torus. In addition, the use of a coupling integral approach for determining the stability of coupled tearing modes is discussed. Finally, the possibility of using initial value resistive MHD codes in realistic toroidal geometry to determine the necessary information from the ideal MHD marginal solution is discussed

  17. Foundations of arithmetic differential geometry

    CERN Document Server

    Buium, Alexandru

    2017-01-01

    The aim of this book is to introduce and develop an arithmetic analogue of classical differential geometry. In this new geometry the ring of integers plays the role of a ring of functions on an infinite dimensional manifold. The role of coordinate functions on this manifold is played by the prime numbers. The role of partial derivatives of functions with respect to the coordinates is played by the Fermat quotients of integers with respect to the primes. The role of metrics is played by symmetric matrices with integer coefficients. The role of connections (respectively curvature) attached to metrics is played by certain adelic (respectively global) objects attached to the corresponding matrices. One of the main conclusions of the theory is that the spectrum of the integers is "intrinsically curved"; the study of this curvature is then the main task of the theory. The book follows, and builds upon, a series of recent research papers. A significant part of the material has never been published before.

  18. Geometry of isotropic convex bodies

    CERN Document Server

    Brazitikos, Silouanos; Valettas, Petros; Vritsiou, Beatrice-Helen

    2014-01-01

    The study of high-dimensional convex bodies from a geometric and analytic point of view, with an emphasis on the dependence of various parameters on the dimension stands at the intersection of classical convex geometry and the local theory of Banach spaces. It is also closely linked to many other fields, such as probability theory, partial differential equations, Riemannian geometry, harmonic analysis and combinatorics. It is now understood that the convexity assumption forces most of the volume of a high-dimensional convex body to be concentrated in some canonical way and the main question is whether, under some natural normalization, the answer to many fundamental questions should be independent of the dimension. The aim of this book is to introduce a number of well-known questions regarding the distribution of volume in high-dimensional convex bodies, which are exactly of this nature: among them are the slicing problem, the thin shell conjecture and the Kannan-Lov�sz-Simonovits conjecture. This book prov...

  19. Differential geometry of group lattices

    International Nuclear Information System (INIS)

    Dimakis, Aristophanes; Mueller-Hoissen, Folkert

    2003-01-01

    In a series of publications we developed ''differential geometry'' on discrete sets based on concepts of noncommutative geometry. In particular, it turned out that first-order differential calculi (over the algebra of functions) on a discrete set are in bijective correspondence with digraph structures where the vertices are given by the elements of the set. A particular class of digraphs are Cayley graphs, also known as group lattices. They are determined by a discrete group G and a finite subset S. There is a distinguished subclass of ''bicovariant'' Cayley graphs with the property ad(S)S subset of S. We explore the properties of differential calculi which arise from Cayley graphs via the above correspondence. The first-order calculi extend to higher orders and then allow us to introduce further differential geometric structures. Furthermore, we explore the properties of ''discrete'' vector fields which describe deterministic flows on group lattices. A Lie derivative with respect to a discrete vector field and an inner product with forms is defined. The Lie-Cartan identity then holds on all forms for a certain subclass of discrete vector fields. We develop elements of gauge theory and construct an analog of the lattice gauge theory (Yang-Mills) action on an arbitrary group lattice. Also linear connections are considered and a simple geometric interpretation of the torsion is established. By taking a quotient with respect to some subgroup of the discrete group, generalized differential calculi associated with so-called Schreier diagrams are obtained

  20. Geometry of anisotropic CO outflows

    International Nuclear Information System (INIS)

    Liseau, R.; Sandell, G.; Helsinki Univ., Observatory, Finland)

    1986-01-01

    A simple geometrical model for the space motions of the bipolar high-velocity CO outflows in regions of recent, active star formation is proposed. It is assumed that the velocity field of the neutral gas component can be represented by large-scale uniform motions. From observations of the spatial distribution and from the characteristics of the line shape of the high-velocity molecular gas emission the geometry of the line-emitting regions can be inferred, i.e., the direction in space and the collimating angle of the flow. The model has been applied to regions where a check on presently obtained results is provided by independent optical determinations of the motions of Herbig-Haro objects associated with the CO flows. These two methods are in good agreement and, furthermore, the results obtained provide convincingly strong evidence for the physical association of CO outflows and Herbig-Haro objects. This also supports the common view that a young stellar central source is responsible for the active phenomena observed in its environmental neighborhood. It is noteworthy that within the framework of the model the determination of the flow geometry of the high-velocity gas from CO measurements is independent of the distance to the source and, furthermore, can be done at relatively low spatial resolution. 32 references

  1. Canonical differential geometry of string backgrounds

    International Nuclear Information System (INIS)

    Schuller, Frederic P.; Wohlfarth, Mattias N.R.

    2006-01-01

    String backgrounds and D-branes do not possess the structure of Lorentzian manifolds, but that of manifolds with area metric. Area metric geometry is a true generalization of metric geometry, which in particular may accommodate a B-field. While an area metric does not determine a connection, we identify the appropriate differential geometric structure which is of relevance for the minimal surface equation in such a generalized geometry. In particular the notion of a derivative action of areas on areas emerges naturally. Area metric geometry provides new tools in differential geometry, which promise to play a role in the description of gravitational dynamics on D-branes

  2. Slab2 - Updated Subduction Zone Geometries and Modeling Tools

    Science.gov (United States)

    Moore, G.; Hayes, G. P.; Portner, D. E.; Furtney, M.; Flamme, H. E.; Hearne, M. G.

    2017-12-01

    The U.S. Geological Survey database of global subduction zone geometries (Slab1.0), is a highly utilized dataset that has been applied to a wide range of geophysical problems. In 2017, these models have been improved and expanded upon as part of the Slab2 modeling effort. With a new data driven approach that can be applied to a broader range of tectonic settings and geophysical data sets, we have generated a model set that will serve as a more comprehensive, reliable, and reproducible resource for three-dimensional slab geometries at all of the world's convergent margins. The newly developed framework of Slab2 is guided by: (1) a large integrated dataset, consisting of a variety of geophysical sources (e.g., earthquake hypocenters, moment tensors, active-source seismic survey images of the shallow slab, tomography models, receiver functions, bathymetry, trench ages, and sediment thickness information); (2) a dynamic filtering scheme aimed at constraining incorporated seismicity to only slab related events; (3) a 3-D data interpolation approach which captures both high resolution shallow geometries and instances of slab rollback and overlap at depth; and (4) an algorithm which incorporates uncertainties of contributing datasets to identify the most probable surface depth over the extent of each subduction zone. Further layers will also be added to the base geometry dataset, such as historic moment release, earthquake tectonic providence, and interface coupling. Along with access to several queryable data formats, all components have been wrapped into an open source library in Python, such that suites of updated models can be released as further data becomes available. This presentation will discuss the extent of Slab2 development, as well as the current availability of the model and modeling tools.

  3. Reproducible and controllable induction voltage adder for scaled beam experiments

    Energy Technology Data Exchange (ETDEWEB)

    Sakai, Yasuo; Nakajima, Mitsuo; Horioka, Kazuhiko [Department of Energy Sciences, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8502 (Japan)

    2016-08-15

    A reproducible and controllable induction adder was developed using solid-state switching devices and Finemet cores for scaled beam compression experiments. A gate controlled MOSFET circuit was developed for the controllable voltage driver. The MOSFET circuit drove the induction adder at low magnetization levels of the cores which enabled us to form reproducible modulation voltages with jitter less than 0.3 ns. Preliminary beam compression experiments indicated that the induction adder can improve the reproducibility of modulation voltages and advance the beam physics experiments.

  4. Differential Geometry Based Multiscale Models

    Science.gov (United States)

    Wei, Guo-Wei

    2010-01-01

    Large chemical and biological systems such as fuel cells, ion channels, molecular motors, and viruses are of great importance to the scientific community and public health. Typically, these complex systems in conjunction with their aquatic environment pose a fabulous challenge to theoretical description, simulation, and prediction. In this work, we propose a differential geometry based multiscale paradigm to model complex macromolecular systems, and to put macroscopic and microscopic descriptions on an equal footing. In our approach, the differential geometry theory of surfaces and geometric measure theory are employed as a natural means to couple the macroscopic continuum mechanical description of the aquatic environment with the microscopic discrete atom-istic description of the macromolecule. Multiscale free energy functionals, or multiscale action functionals are constructed as a unified framework to derive the governing equations for the dynamics of different scales and different descriptions. Two types of aqueous macromolecular complexes, ones that are near equilibrium and others that are far from equilibrium, are considered in our formulations. We show that generalized Navier–Stokes equations for the fluid dynamics, generalized Poisson equations or generalized Poisson–Boltzmann equations for electrostatic interactions, and Newton's equation for the molecular dynamics can be derived by the least action principle. These equations are coupled through the continuum-discrete interface whose dynamics is governed by potential driven geometric flows. Comparison is given to classical descriptions of the fluid and electrostatic interactions without geometric flow based micro-macro interfaces. The detailed balance of forces is emphasized in the present work. We further extend the proposed multiscale paradigm to micro-macro analysis of electrohydrodynamics, electrophoresis, fuel cells, and ion channels. We derive generalized Poisson–Nernst–Planck equations that

  5. Differential geometry based multiscale models.

    Science.gov (United States)

    Wei, Guo-Wei

    2010-08-01

    Large chemical and biological systems such as fuel cells, ion channels, molecular motors, and viruses are of great importance to the scientific community and public health. Typically, these complex systems in conjunction with their aquatic environment pose a fabulous challenge to theoretical description, simulation, and prediction. In this work, we propose a differential geometry based multiscale paradigm to model complex macromolecular systems, and to put macroscopic and microscopic descriptions on an equal footing. In our approach, the differential geometry theory of surfaces and geometric measure theory are employed as a natural means to couple the macroscopic continuum mechanical description of the aquatic environment with the microscopic discrete atomistic description of the macromolecule. Multiscale free energy functionals, or multiscale action functionals are constructed as a unified framework to derive the governing equations for the dynamics of different scales and different descriptions. Two types of aqueous macromolecular complexes, ones that are near equilibrium and others that are far from equilibrium, are considered in our formulations. We show that generalized Navier-Stokes equations for the fluid dynamics, generalized Poisson equations or generalized Poisson-Boltzmann equations for electrostatic interactions, and Newton's equation for the molecular dynamics can be derived by the least action principle. These equations are coupled through the continuum-discrete interface whose dynamics is governed by potential driven geometric flows. Comparison is given to classical descriptions of the fluid and electrostatic interactions without geometric flow based micro-macro interfaces. The detailed balance of forces is emphasized in the present work. We further extend the proposed multiscale paradigm to micro-macro analysis of electrohydrodynamics, electrophoresis, fuel cells, and ion channels. We derive generalized Poisson-Nernst-Planck equations that are

  6. Hopf algebras in noncommutative geometry

    International Nuclear Information System (INIS)

    Varilly, Joseph C.

    2001-10-01

    We give an introductory survey to the use of Hopf algebras in several problems of non- commutative geometry. The main example, the Hopf algebra of rooted trees, is a graded, connected Hopf algebra arising from a universal construction. We show its relation to the algebra of transverse differential operators introduced by Connes and Moscovici in order to compute a local index formula in cyclic cohomology, and to the several Hopf algebras defined by Connes and Kreimer to simplify the combinatorics of perturbative renormalization. We explain how characteristic classes for a Hopf module algebra can be obtained from the cyclic cohomology of the Hopf algebra which acts on it. Finally, we discuss the theory of non- commutative spherical manifolds and show how they arise as homogeneous spaces of certain compact quantum groups. (author)

  7. Integrable systems, geometry, and topology

    CERN Document Server

    Terng, Chuu-Lian

    2006-01-01

    The articles in this volume are based on lectures from a program on integrable systems and differential geometry held at Taiwan's National Center for Theoretical Sciences. As is well-known, for many soliton equations, the solutions have interpretations as differential geometric objects, and thereby techniques of soliton equations have been successfully applied to the study of geometric problems. The article by Burstall gives a beautiful exposition on isothermic surfaces and their relations to integrable systems, and the two articles by Guest give an introduction to quantum cohomology, carry out explicit computations of the quantum cohomology of flag manifolds and Hirzebruch surfaces, and give a survey of Givental's quantum differential equations. The article by Heintze, Liu, and Olmos is on the theory of isoparametric submanifolds in an arbitrary Riemannian manifold, which is related to the n-wave equation when the ambient manifold is Euclidean. Mukai-Hidano and Ohnita present a survey on the moduli space of ...

  8. Tarski Geometry Axioms. Part III

    Directory of Open Access Journals (Sweden)

    Coghetto Roland

    2017-12-01

    Full Text Available In the article, we continue the formalization of the work devoted to Tarski’s geometry - the book “Metamathematische Methoden in der Geometrie” by W. Schwabhäuser, W. Szmielew, and A. Tarski. After we prepared some introductory formal framework in our two previous Mizar articles, we focus on the regular translation of underlying items faithfully following the abovementioned book (our encoding covers first seven chapters. Our development utilizes also other formalization efforts of the same topic, e.g. Isabelle/HOL by Makarios, Metamath or even proof objects obtained directly from Prover9. In addition, using the native Mizar constructions (cluster registrations the propositions (“Satz” are reformulated under weaker conditions, i.e. by using fewer axioms or by proposing an alternative version that uses just another axioms (ex. Satz 2.1 or Satz 2.2.

  9. Applied geometry and discrete mathematics

    CERN Document Server

    Sturm; Gritzmann, Peter; Sturmfels, Bernd

    1991-01-01

    This volume, published jointly with the Association for Computing Machinery, comprises a collection of research articles celebrating the occasion of Victor Klee's sixty-fifth birthday in September 1990. During his long career, Klee has made contributions to a wide variety of areas, such as discrete and computational geometry, convexity, combinatorics, graph theory, functional analysis, mathematical programming and optimization, and theoretical computer science. In addition, Klee made important contributions to mathematics education, mathematical methods in economics and the decision sciences, applications of discrete mathematics in the biological and social sciences, and the transfer of knowledge from applied mathematics to industry. In honor of Klee's achievements, this volume presents more than forty papers on topics related to Klee's research. While the majority of the papers are research articles, a number of survey articles are also included. Mirroring the breadth of Klee's mathematical contributions, th...

  10. Introduction to global variational geometry

    CERN Document Server

    Krupka, Demeter

    2015-01-01

    The book is devoted to recent research in the global variational theory on smooth manifolds. Its main objective is an extension of the classical variational calculus on Euclidean spaces to (topologically nontrivial) finite-dimensional smooth manifolds; to this purpose the methods of global analysis of differential forms are used. Emphasis is placed on the foundations of the theory of variational functionals on fibered manifolds - relevant geometric structures for variational principles in geometry, physical field theory and higher-order fibered mechanics. The book chapters include: - foundations of jet bundles and analysis of differential forms and vector fields on jet bundles, - the theory of higher-order integral variational functionals for sections of a fibred space, the (global) first variational formula in infinitesimal and integral forms- extremal conditions and the discussion of Noether symmetries and generalizations,- the inverse problems of the calculus of variations of Helmholtz type- variational se...

  11. Some Progress in Conformal Geometry

    Directory of Open Access Journals (Sweden)

    Sun-Yung A. Chang

    2007-12-01

    Full Text Available This is a survey paper of our current research on the theory of partial differential equations in conformal geometry. Our intention is to describe some of our current works in a rather brief and expository fashion. We are not giving a comprehensive survey on the subject and references cited here are not intended to be complete. We introduce a bubble tree structure to study the degeneration of a class of Yamabe metrics on Bach flat manifolds satisfying some global conformal bounds on compact manifolds of dimension 4. As applications, we establish a gap theorem, a finiteness theorem for diffeomorphism type for this class, and diameter bound of the $sigma_2$-metrics in a class of conformal 4-manifolds. For conformally compact Einstein metrics we introduce an eigenfunction compactification. As a consequence we obtain some topological constraints in terms of renormalized volumes.

  12. Seesaw mechanism in warped geometry

    International Nuclear Information System (INIS)

    Huber, S.J.; Shafi, Q.

    2003-09-01

    We show how the seesaw mechanism for neutrino masses can be realized within a five dimensional (5D) warped geometry framework. Intermediate scale standard model (SM) singlet neutrino masses, needed to explain the atmospheric and solar neutrino oscillations, are shown to be proportional to M P1 .exp((2c-1)πkR), where c denotes the coefficient of the 5D Dirac mass term for the singlet neutrino which also has a Planck scale Majorana mass localized on the Planck-brane, and kR∼11 in order to resolve the gauge hierarchy problem. The case with a bulk 5D Majorana mass term for the singlet neutrino is briefly discussed. (orig.)

  13. Seesaw mechanism in warped geometry

    International Nuclear Information System (INIS)

    Huber, Stephan J.; Shafi, Qaisar

    2004-01-01

    We show how the seesaw mechanism for neutrino masses can be realized within a five-dimensional (5D) warped geometry framework. Intermediate scale standard model (SM) singlet neutrino masses, needed to explain the atmospheric and solar neutrino oscillations, are shown to be proportional to M Pl exp((2c-1)πkR), where c denotes the coefficient of the 5D Dirac mass term for the singlet neutrino which also has a Planck scale Majorana mass localized on the Planck-brane, and kR∼11 in order to resolve the gauge hierarchy problem. The case with a bulk 5D Majorana mass term for the singlet neutrino is briefly discussed

  14. Conformal geometry and quasiregular mappings

    CERN Document Server

    Vuorinen, Matti

    1988-01-01

    This book is an introduction to the theory of spatial quasiregular mappings intended for the uninitiated reader. At the same time the book also addresses specialists in classical analysis and, in particular, geometric function theory. The text leads the reader to the frontier of current research and covers some most recent developments in the subject, previously scatterd through the literature. A major role in this monograph is played by certain conformal invariants which are solutions of extremal problems related to extremal lengths of curve families. These invariants are then applied to prove sharp distortion theorems for quasiregular mappings. One of these extremal problems of conformal geometry generalizes a classical two-dimensional problem of O. Teichmüller. The novel feature of the exposition is the way in which conformal invariants are applied and the sharp results obtained should be of considerable interest even in the two-dimensional particular case. This book combines the features of a textbook an...

  15. Quantization of the Schwarzschild geometry

    International Nuclear Information System (INIS)

    Melas, Evangelos

    2013-01-01

    The conditional symmetries of the reduced Einstein-Hilbert action emerging from a static, spherically symmetric geometry are used as supplementary conditions on the wave function. Based on their integrability conditions, only one of the three existing symmetries can be consistently imposed, while the unique Casimir invariant, being the product of the remaining two symmetries, is calculated as the only possible second condition on the wave function. This quadratic integral of motion is identified with the reparametrization generator, as an implication of the uniqueness of the dynamical evolution, by fixing a suitable parametrization of the r-lapse function. In this parametrization, the determinant of the supermetric plays the role of the mesure. The combined Wheeler – DeWitt and linear conditional symmetry equations are analytically solved. The solutions obtained depend on the product of the two ''scale factors''.

  16. Projective geometry solved problems and theory review

    CERN Document Server

    Fortuna, Elisabetta; Pardini, Rita

    2016-01-01

    This book starts with a concise but rigorous overview of the basic notions of projective geometry, using straightforward and modern language. The goal is not only to establish the notation and terminology used, but also to offer the reader a quick survey of the subject matter. In the second part, the book presents more than 200 solved problems, for many of which several alternative solutions are provided. The level of difficulty of the exercises varies considerably: they range from computations to harder problems of a more theoretical nature, up to some actual complements of the theory. The structure of the text allows the reader to use the solutions of the exercises both to master the basic notions and techniques and to further their knowledge of the subject, thus learning some classical results not covered in the first part of the book. The book addresses the needs of undergraduate and graduate students in the theoretical and applied sciences, and will especially benefit those readers with a solid grasp of ...

  17. Varying Constants, Gravitation and Cosmology

    Directory of Open Access Journals (Sweden)

    Jean-Philippe Uzan

    2011-03-01

    Full Text Available Fundamental constants are a cornerstone of our physical laws. Any constant varying in space and/or time would reflect the existence of an almost massless field that couples to matter. This will induce a violation of the universality of free fall. Thus, it is of utmost importance for our understanding of gravity and of the domain of validity of general relativity to test for their constancy. We detail the relations between the constants, the tests of the local position invariance and of the universality of free fall. We then review the main experimental and observational constraints that have been obtained from atomic clocks, the Oklo phenomenon, solar system observations, meteorite dating, quasar absorption spectra, stellar physics, pulsar timing, the cosmic microwave background and big bang nucleosynthesis. At each step we describe the basics of each system, its dependence with respect to the constants, the known systematic effects and the most recent constraints that have been obtained. We then describe the main theoretical frameworks in which the low-energy constants may actually be varying and we focus on the unification mechanisms and the relations between the variation of different constants. To finish, we discuss the more speculative possibility of understanding their numerical values and the apparent fine-tuning that they confront us with.

  18. Symplectic and Poisson Geometry in Interaction with Analysis, Algebra and Topology & Symplectic Geometry, Noncommutative Geometry and Physics

    CERN Document Server

    Eliashberg, Yakov; Maeda, Yoshiaki; Symplectic, Poisson, and Noncommutative geometry

    2014-01-01

    Symplectic geometry originated in physics, but it has flourished as an independent subject in mathematics, together with its offspring, symplectic topology. Symplectic methods have even been applied back to mathematical physics. Noncommutative geometry has developed an alternative mathematical quantization scheme based on a geometric approach to operator algebras. Deformation quantization, a blend of symplectic methods and noncommutative geometry, approaches quantum mechanics from a more algebraic viewpoint, as it addresses quantization as a deformation of Poisson structures. This volume contains seven chapters based on lectures given by invited speakers at two May 2010 workshops held at the Mathematical Sciences Research Institute: Symplectic and Poisson Geometry in Interaction with Analysis, Algebra and Topology (honoring Alan Weinstein, one of the key figures in the field) and Symplectic Geometry, Noncommutative Geometry and Physics. The chapters include presentations of previously unpublished results and ...

  19. Reproducibility of corneal, macular and retinal nerve fiber layer ...

    African Journals Online (AJOL)

    side the limits of a consulting room.5. Reproducibility of ... examination, intraocular pressure and corneal thickness ... All OCT measurements were taken between 2 and 5 pm ..... CAS-OCT, Slit-lamp OCT, RTVue-100) have shown ICC.

  20. Beyond Bundles - Reproducible Software Environments with GNU Guix

    CERN Multimedia

    CERN. Geneva; Wurmus, Ricardo

    2018-01-01

    Building reproducible data analysis pipelines and numerical experiments is a key challenge for reproducible science, in which tools to reproduce software environments play a critical role. The advent of “container-based” deployment tools such as Docker and Singularity has made it easier to replicate software environments. These tools are very much about bundling the bits of software binaries in a convenient way, not so much about describing how software is composed. Science is not just about replicating, though—it demands the ability to inspect and to experiment. In this talk we will present GNU Guix, a software management toolkit. Guix departs from container-based solutions in that it enables declarative composition of software environments. It is comparable to “package managers” like apt or yum, but with a significant difference: Guix provides accurate provenance tracking of build artifacts, and bit-reproducible software. We will illustrate the many ways in which Guix can improve how software en...

  1. The reproducibility of random amplified polymorphic DNA (RAPD ...

    African Journals Online (AJOL)

    RAPD) profiles of Streptococcus thermophilus strains by using the polymerase chain reaction (PCR). Several factors can cause the amplification of false and non reproducible bands in the RAPD profiles. We tested three primers, OPI-02 MOD, ...

  2. Convection in Slab and Spheroidal Geometries

    Science.gov (United States)

    Porter, David H.; Woodward, Paul R.; Jacobs, Michael L.

    2000-01-01

    Three-dimensional numerical simulations of compressible turbulent thermally driven convection, in both slab and spheroidal geometries, are reviewed and analyzed in terms of velocity spectra and mixing-length theory. The same ideal gas model is used in both geometries, and resulting flows are compared. The piecewise-parabolic method (PPM), with either thermal conductivity or photospheric boundary conditions, is used to solve the fluid equations of motion. Fluid motions in both geometries exhibit a Kolmogorov-like k(sup -5/3) range in their velocity spectra. The longest wavelength modes are energetically dominant in both geometries, typically leading to one convection cell dominating the flow. In spheroidal geometry, a dipolar flow dominates the largest scale convective motions. Downflows are intensely turbulent and up drafts are relatively laminar in both geometries. In slab geometry, correlations between temperature and velocity fluctuations, which lead to the enthalpy flux, are fairly independent of depth. In spheroidal geometry this same correlation increases linearly with radius over the inner 70 percent by radius, in which the local pressure scale heights are a sizable fraction of the radius. The effects from the impenetrable boundary conditions in the slab geometry models are confused with the effects from non-local convection. In spheroidal geometry nonlocal effects, due to coherent plumes, are seen as far as several pressure scale heights from the lower boundary and are clearly distinguishable from boundary effects.

  3. Role of flood discharge in shaping stream geometry: Analysis of a small modern stream in the Uinta Basin, USA

    Directory of Open Access Journals (Sweden)

    Guang-Ming Hu

    2017-01-01

    This stream example demonstrates the subtleties of stream flow and the importance of flood discharge in shaping the channel geometry. Although it is difficult to scale up this example to a large river system that carves geomorphic landscape, this case shows how river geometries vary from the traditional patterns due to different gradient.

  4. Systematic heterogenization for better reproducibility in animal experimentation.

    Science.gov (United States)

    Richter, S Helene

    2017-08-31

    The scientific literature is full of articles discussing poor reproducibility of findings from animal experiments as well as failures to translate results from preclinical animal studies to clinical trials in humans. Critics even go so far as to talk about a "reproducibility crisis" in the life sciences, a novel headword that increasingly finds its way into numerous high-impact journals. Viewed from a cynical perspective, Fett's law of the lab "Never replicate a successful experiment" has thus taken on a completely new meaning. So far, poor reproducibility and translational failures in animal experimentation have mostly been attributed to biased animal data, methodological pitfalls, current publication ethics and animal welfare constraints. More recently, the concept of standardization has also been identified as a potential source of these problems. By reducing within-experiment variation, rigorous standardization regimes limit the inference to the specific experimental conditions. In this way, however, individual phenotypic plasticity is largely neglected, resulting in statistically significant but possibly irrelevant findings that are not reproducible under slightly different conditions. By contrast, systematic heterogenization has been proposed as a concept to improve representativeness of study populations, contributing to improved external validity and hence improved reproducibility. While some first heterogenization studies are indeed very promising, it is still not clear how this approach can be transferred into practice in a logistically feasible and effective way. Thus, further research is needed to explore different heterogenization strategies as well as alternative routes toward better reproducibility in animal experimentation.

  5. Weighted approximation with varying weight

    CERN Document Server

    Totik, Vilmos

    1994-01-01

    A new construction is given for approximating a logarithmic potential by a discrete one. This yields a new approach to approximation with weighted polynomials of the form w"n"(" "= uppercase)P"n"(" "= uppercase). The new technique settles several open problems, and it leads to a simple proof for the strong asymptotics on some L p(uppercase) extremal problems on the real line with exponential weights, which, for the case p=2, are equivalent to power- type asymptotics for the leading coefficients of the corresponding orthogonal polynomials. The method is also modified toyield (in a sense) uniformly good approximation on the whole support. This allows one to deduce strong asymptotics in some L p(uppercase) extremal problems with varying weights. Applications are given, relating to fast decreasing polynomials, asymptotic behavior of orthogonal polynomials and multipoint Pade approximation. The approach is potential-theoretic, but the text is self-contained.

  6. Estrelas variáveis

    OpenAIRE

    Viana, Sérgio Manuel de Oliveira

    2001-01-01

    A observação do céu nocturno é uma prática que vem da Antiguidade. Desde então e durante muito tempo pensou-se que as estrelas mantinham o brilho constante. Assim foi até ao século XVI, quando David Fabricius observou uma estrela cujo brilho variava periodicamente. Dois séculos mais tarde, Jonh Goodricke descobriu uma segunda estrela e com o desenvolvimento de instrumentos de observação este conjunto foi muito alargado e hoje inclui o Sol.A variação do brilho das estrelas variáveis permite d...

  7. Variable geometry for supersonic mixed-compression inlets

    Science.gov (United States)

    Sorensen, N. E.; Latham, E. A.; Smeltzer, D. B.

    1974-01-01

    Study of two-dimensional and axisymmetric supersonic mixed-compression inlet systems has shown that the geometry of both systems can be varied to provide adequate transonic airflow to satisfy the airflow demand of most jet engines. Collapsing geometry systems for both types of inlet systems provide a generous amount of transonic airflow for any design Mach number inlet system. However, the mechanical practicality of collapsing centerbodies for axisymmetric inlet systems is doubtful. Therefore, translating centerbody axisymmetric inlets with auxiliary airflow systems to augment the transonic airflow capability are an attractive alternative. Estimates show that the capture mass-flow ratio at Mach number 1.0 can be increased approximately 0.20 for a very short axisymmetric inlet system designed for Mach number 2.37. With this increase in mass-flow ratio, even variable-cycle engine transonic airflow demand can be matched without oversizing the inlet at the design Mach number.

  8. Geometry of illumination, luminance contrast, and gloss perception.

    Science.gov (United States)

    Leloup, Frédéric B; Pointer, Michael R; Dutré, Philip; Hanselaer, Peter

    2010-09-01

    The influence of both the geometry of illumination and luminance contrast on gloss perception has been examined using the method of paired comparison. Six achromatic glass samples having different lightness were illuminated by two light sources. Only one of these light sources was visible in reflection by the observer. By separate adjustment of the intensity of both light sources, the luminance of both the reflected image and the adjacent off-specular surroundings could be individually varied. It was found that visual gloss appraisal did not correlate with instrumentally measured specular gloss; however, psychometric contrast seemed to be a much better correlate. It has become clear that not only the sample surface characteristics determine gloss perception: the illumination geometry could be an even more important factor.

  9. Banff initiative for quality assurance in transplantation (BIFQUIT): reproducibility of C4d immunohistochemistry in kidney allografts.

    Science.gov (United States)

    Mengel, M; Chan, S; Climenhaga, J; Kushner, Y B; Regele, H; Colvin, R B; Randhawa, P

    2013-05-01

    Detection of C4d is crucial for diagnosing antibody-mediated-rejection. We conducted a multicenter trial to assess the reproducibility for C4d immunohistochemistry on paraffin tissue. Unstained slides from a tissue microarray (TMA) comprising 44 kidney allograft specimens representing a full analytical spectrum for C4d were distributed to 73 institutions. Participants stained TMA slides using local protocols and evaluated their slides following the Banff C4d schema. Local staining details and evaluation scores were collected online. Stained slides were returned for centralized panel re-evaluation. Kappa statistics were used to determine reproducibility. Poor interinstitutional reproducibility was observed (kappa 0.17), which was equally due to limitations in interobserver (kappa 0.44) and interlaboratory reproducibility (kappa 0.46). Depending on the cut-off, reproducibility could be improved by omitting C4d grading and only considering ± calls. Heat-induced epitope recovery (pH 6-7, 20-30 min, citrate buffer) with polyclonal antibody incubation (40 min) appeared as best practice. The BIFQUIT trial results indicated that C4d staining on paraffin sections varies considerably between laboratories. Refinement of the current Banff C4d scoring schema and harmonization of tissue processing and staining protocols is necessary to achieve acceptable reproducibility. © Copyright 2013 The American Society of Transplantation and the American Society of Transplant Surgeons.

  10. Connections between algebra, combinatorics, and geometry

    CERN Document Server

    Sather-Wagstaff, Sean

    2014-01-01

    Commutative algebra, combinatorics, and algebraic geometry are thriving areas of mathematical research with a rich history of interaction. Connections Between Algebra, Combinatorics, and Geometry contains lecture notes, along with exercises and solutions, from the Workshop on Connections Between Algebra and Geometry held at the University of Regina from May 29-June 1, 2012. It also contains research and survey papers from academics invited to participate in the companion Special Session on Interactions Between Algebraic Geometry and Commutative Algebra, which was part of the CMS Summer Meeting at the University of Regina held June 2–3, 2012, and the meeting Further Connections Between Algebra and Geometry, which was held at the North Dakota State University, February 23, 2013. This volume highlights three mini-courses in the areas of commutative algebra and algebraic geometry: differential graded commutative algebra, secant varieties, and fat points and symbolic powers. It will serve as a useful resou...

  11. Second International workshop Geometry and Symbolic Computation

    CERN Document Server

    Walczak, Paweł; Geometry and its Applications

    2014-01-01

    This volume has been divided into two parts: Geometry and Applications. The geometry portion of the book relates primarily to geometric flows, laminations, integral formulae, geometry of vector fields on Lie groups, and osculation; the articles in the applications portion concern some particular problems of the theory of dynamical systems, including mathematical problems of liquid flows and a study of cycles for non-dynamical systems. This Work is based on the second international workshop entitled "Geometry and Symbolic Computations," held on May 15-18, 2013 at the University of Haifa and is dedicated to modeling (using symbolic calculations) in differential geometry and its applications in fields such as computer science, tomography, and mechanics. It is intended to create a forum for students and researchers in pure and applied geometry to promote discussion of modern state-of-the-art in geometric modeling using symbolic programs such as Maple™ and Mathematica®, as well as presentation of new results. ...

  12. Bubbling 1/2 BPS geometries and Penrose limits

    International Nuclear Information System (INIS)

    Takayama, Yastoshi; Yoshida, Kentaroh

    2005-01-01

    We discuss how to take a Penrose limit in bubbling 1/2 Bogomol'nyi-Prasad-Sommerfield geometries at the stage of a single function z(x 1 ,x 2 ,y). By starting from the z of the AdS 5 xS 5 , we can directly derive that of the pp wave via the Penrose limit. In the course of the calculation, the function z for the pp wave with 1/R 2 corrections is obtained. We see that it surely reproduces the pp wave with 1/R 2 terms. We also investigate the pp wave with higher-order 1/R 2 corrections. In addition, the Penrose limit in the configuration of the concentric rings is considered

  13. A vector space approach to geometry

    CERN Document Server

    Hausner, Melvin

    2010-01-01

    The effects of geometry and linear algebra on each other receive close attention in this examination of geometry's correlation with other branches of math and science. In-depth discussions include a review of systematic geometric motivations in vector space theory and matrix theory; the use of the center of mass in geometry, with an introduction to barycentric coordinates; axiomatic development of determinants in a chapter dealing with area and volume; and a careful consideration of the particle problem. 1965 edition.

  14. Classical geometry Euclidean, transformational, inversive, and projective

    CERN Document Server

    Leonard, I E; Liu, A C F; Tokarsky, G W

    2014-01-01

    Features the classical themes of geometry with plentiful applications in mathematics, education, engineering, and science Accessible and reader-friendly, Classical Geometry: Euclidean, Transformational, Inversive, and Projective introduces readers to a valuable discipline that is crucial to understanding bothspatial relationships and logical reasoning. Focusing on the development of geometric intuitionwhile avoiding the axiomatic method, a problem solving approach is encouraged throughout. The book is strategically divided into three sections: Part One focuses on Euclidean geometry, which p

  15. Introduction to non-Euclidean geometry

    CERN Document Server

    Wolfe, Harold E

    2012-01-01

    One of the first college-level texts for elementary courses in non-Euclidean geometry, this concise, readable volume is geared toward students familiar with calculus. A full treatment of the historical background explores the centuries-long efforts to prove Euclid's parallel postulate and their triumphant conclusion. Numerous original exercises form an integral part of the book.Topics include hyperbolic plane geometry and hyperbolic plane trigonometry, applications of calculus to the solutions of some problems in hyperbolic geometry, elliptic plane geometry and trigonometry, and the consistenc

  16. Disformal transformation in Newton-Cartan geometry

    Energy Technology Data Exchange (ETDEWEB)

    Huang, Peng [Zhejiang Chinese Medical University, Department of Information, Hangzhou (China); Sun Yat-Sen University, School of Physics and Astronomy, Guangzhou (China); Yuan, Fang-Fang [Nankai University, School of Physics, Tianjin (China)

    2016-08-15

    Newton-Cartan geometry has played a central role in recent discussions of the non-relativistic holography and condensed matter systems. Although the conformal transformation in non-relativistic holography can easily be rephrased in terms of Newton-Cartan geometry, we show that it requires a nontrivial procedure to arrive at the consistent form of anisotropic disformal transformation in this geometry. Furthermore, as an application of the newly obtained transformation, we use it to induce a geometric structure which may be seen as a particular non-relativistic version of the Weyl integrable geometry. (orig.)

  17. Applications of Affine and Weyl geometry

    CERN Document Server

    García-Río, Eduardo; Nikcevic, Stana

    2013-01-01

    Pseudo-Riemannian geometry is, to a large extent, the study of the Levi-Civita connection, which is the unique torsion-free connection compatible with the metric structure. There are, however, other affine connections which arise in different contexts, such as conformal geometry, contact structures, Weyl structures, and almost Hermitian geometry. In this book, we reverse this point of view and instead associate an auxiliary pseudo-Riemannian structure of neutral signature to certain affine connections and use this correspondence to study both geometries. We examine Walker structures, Riemannia

  18. Mathematical efficiency calibration with uncertain source geometries using smart optimization

    International Nuclear Information System (INIS)

    Menaa, N.; Bosko, A.; Bronson, F.; Venkataraman, R.; Russ, W. R.; Mueller, W.; Nizhnik, V.; Mirolo, L.

    2011-01-01

    The In Situ Object Counting Software (ISOCS), a mathematical method developed by CANBERRA, is a well established technique for computing High Purity Germanium (HPGe) detector efficiencies for a wide variety of source shapes and sizes. In the ISOCS method, the user needs to input the geometry related parameters such as: the source dimensions, matrix composition and density, along with the source-to-detector distance. In many applications, the source dimensions, the matrix material and density may not be well known. Under such circumstances, the efficiencies may not be very accurate since the modeled source geometry may not be very representative of the measured geometry. CANBERRA developed an efficiency optimization software known as 'Advanced ISOCS' that varies the not well known parameters within user specified intervals and determines the optimal efficiency shape and magnitude based on available benchmarks in the measured spectra. The benchmarks could be results from isotopic codes such as MGAU, MGA, IGA, or FRAM, activities from multi-line nuclides, and multiple counts of the same item taken in different geometries (from the side, bottom, top etc). The efficiency optimization is carried out using either a random search based on standard probability distributions, or using numerical techniques that carry out a more directed (referred to as 'smart' in this paper) search. Measurements were carried out using representative source geometries and radionuclide distributions. The radionuclide activities were determined using the optimum efficiency and compared against the true activities. The 'Advanced ISOCS' method has many applications among which are: Safeguards, Decommissioning and Decontamination, Non-Destructive Assay systems and Nuclear reactor outages maintenance. (authors)

  19. Reproducibility of hohlraum-driven implosion symmetry on the National Ignition Facility

    Directory of Open Access Journals (Sweden)

    Kyrala G.A.

    2013-11-01

    Full Text Available Indirectly driven Symcap capsules are used at the NIF to obtain information about ignition capsule implosion performance, in particular shape. Symcaps replace the cryogenic fuel layer with an equivalent ablator mass and can be similarly diagnosed. Symcaps are good symmetry surrogates to an ignition capsule after the peak of the drive, radiation-hydrodynamics simulations predict that doping of the symcaps vary the behavior of the implosion. We compare the equatorial shapes of a symcap doped with Si or Ge, as well as examine the reproducibility of the shape measurement using two symcaps with the same hohlraum and laser conditions.

  20. Shear wave elastography for breast masses is highly reproducible.

    Science.gov (United States)

    Cosgrove, David O; Berg, Wendie A; Doré, Caroline J; Skyba, Danny M; Henry, Jean-Pierre; Gay, Joel; Cohen-Bacrie, Claude

    2012-05-01

    To evaluate intra- and interobserver reproducibility of shear wave elastography (SWE) for breast masses. For intraobserver reproducibility, each observer obtained three consecutive SWE images of 758 masses that were visible on ultrasound. 144 (19%) were malignant. Weighted kappa was used to assess the agreement of qualitative elastographic features; the reliability of quantitative measurements was assessed by intraclass correlation coefficients (ICC). For the interobserver reproducibility, a blinded observer reviewed images and agreement on features was determined. Mean age was 50 years; mean mass size was 13 mm. Qualitatively, SWE images were at least reasonably similar for 666/758 (87.9%). Intraclass correlation for SWE diameter, area and perimeter was almost perfect (ICC ≥ 0.94). Intraobserver reliability for maximum and mean elasticity was almost perfect (ICC = 0.84 and 0.87) and was substantial for the ratio of mass-to-fat elasticity (ICC = 0.77). Interobserver agreement was moderate for SWE homogeneity (κ = 0.57), substantial for qualitative colour assessment of maximum elasticity (κ = 0.66), fair for SWE shape (κ = 0.40), fair for B-mode mass margins (κ = 0.38), and moderate for B-mode mass shape (κ = 0.58), orientation (κ = 0.53) and BI-RADS assessment (κ = 0.59). SWE is highly reproducible for assessing elastographic features of breast masses within and across observers. SWE interpretation is at least as consistent as that of BI-RADS ultrasound B-mode features. • Shear wave ultrasound elastography can measure the stiffness of breast tissue • It provides a qualitatively and quantitatively interpretable colour-coded map of tissue stiffness • Intraobserver reproducibility of SWE is almost perfect while intraobserver reproducibility of SWE proved to be moderate to substantial • The most reproducible SWE features between observers were SWE image homogeneity and maximum elasticity.

  1. 4d quantum geometry from 3d supersymmetric gauge theory and holomorphic block

    International Nuclear Information System (INIS)

    Han, Muxin

    2016-01-01

    A class of 3d N=2 supersymmetric gauge theories are constructed and shown to encode the simplicial geometries in 4-dimensions. The gauge theories are defined by applying the Dimofte-Gaiotto-Gukov construction http://dx.doi.org/10.1007/s00220-013-1863-2 in 3d-3d correspondence to certain graph complement 3-manifolds. Given a gauge theory in this class, the massive supersymmetric vacua of the theory contain the classical geometries on a 4d simplicial complex. The corresponding 4d simplicial geometries are locally constant curvature (either dS or AdS), in the sense that they are made by gluing geometrical 4-simplices of the same constant curvature. When the simplicial complex is sufficiently refined, the simplicial geometries can approximate all possible smooth geometries on 4-manifold. At the quantum level, we propose that a class of holomorphic blocks defined in http://dx.doi.org/10.1007/JHEP12(2014)177 from the 3d N=2 gauge theories are wave functions of quantum 4d simplicial geometries. In the semiclassical limit, the asymptotic behavior of holomorphic block reproduces the classical action of 4d Einstein-Hilbert gravity in the simplicial context.

  2. Special Geometry and Automorphic Forms

    CERN Document Server

    Berglund, P; Wyllard, N; Berglund, Per; Henningson, Mans; Wyllard, Niclas

    1997-01-01

    We consider special geometry of the vector multiplet moduli space in compactifications of the heterotic string on $K3 \\times T^2$ or the type IIA string on $K3$-fibered Calabi-Yau threefolds. In particular, we construct a modified dilaton that is invariant under $SO(2, n; Z)$ T-duality transformations at the non-perturbative level and regular everywhere on the moduli space. The invariant dilaton, together with a set of other coordinates that transform covariantly under $SO(2, n; Z)$, parameterize the moduli space. The construction involves a meromorphic automorphic function of $SO(2, n; Z)$, that also depends on the invariant dilaton. In the weak coupling limit, the divisor of this automorphic form is an integer linear combination of the rational quadratic divisors where the gauge symmetry is enhanced classically. We also show how the non-perturbative prepotential can be expressed in terms of meromorphic automorphic forms, by expanding a T-duality invariant quantity both in terms of the standard special coord...

  3. Differential geometry in string models

    International Nuclear Information System (INIS)

    Alvarez, O.

    1986-01-01

    In this article the author reviews the differential geometric approach to the quantization of strings. A seminal paper demonstrates the connection between the trace anomaly and the critical dimension. The role played by the Faddeev-Popov ghosts has been instrumental in much of the subsequent work on the quantization of strings. This paper discusses the differential geometry of two dimensional surfaces and its importance in the quantization of strings. The path integral quantization approach to strings will be carefully analyzed to determine the correct effective measure for string theories. The choice of measure for the path integral is determined by differential geometric considerations. Once the measure is determined, the manifest diffeomorphism invariance of the theory will have to be broken by using the Faddeev-Popov ansatz. The gauge fixed theory is studied in detail with emphasis on the role of conformal and gravitational anomalies. In the analysis, the path integral formulation of the gauge fixed theory requires summing over all the distinct complex structures on the manifold

  4. Geometry of lattice field theory

    International Nuclear Information System (INIS)

    Honan, T.J.

    1986-01-01

    Using some tools of algebraic topology, a general formalism for lattice field theory is presented. The lattice is taken to be a simplicial complex that is also a manifold and is referred to as a simplicial manifold. The fields on this lattice are cochains, that are called lattice forms to emphasize the connections with differential forms in the continuum. This connection provides a new bridge between lattice and continuum field theory. A metric can be put onto this simplicial manifold by assigning lengths to every link or I-simplex of the lattice. Regge calculus is a way of defining general relativity on this lattice. A geometric discussion of Regge calculus is presented. The Regge action, which is a discrete form of the Hilbert action, is derived from the Hilbert action using distribution valued forms. This is a new derivation that emphasizes the underlying geometry. Kramers-Wannier duality in statistical mechanics is discussed in this general setting. Nonlinear field theories, which include gauge theories and nonlinear sigma models are discussed in the continuum and then are put onto a lattice. The main new result here is the generalization to curved spacetime, which consists of making the theory compatible with Regge calculus

  5. Latent geometry of bipartite networks

    Science.gov (United States)

    Kitsak, Maksim; Papadopoulos, Fragkiskos; Krioukov, Dmitri

    2017-03-01

    Despite the abundance of bipartite networked systems, their organizing principles are less studied compared to unipartite networks. Bipartite networks are often analyzed after projecting them onto one of the two sets of nodes. As a result of the projection, nodes of the same set are linked together if they have at least one neighbor in common in the bipartite network. Even though these projections allow one to study bipartite networks using tools developed for unipartite networks, one-mode projections lead to significant loss of information and artificial inflation of the projected network with fully connected subgraphs. Here we pursue a different approach for analyzing bipartite systems that is based on the observation that such systems have a latent metric structure: network nodes are points in a latent metric space, while connections are more likely to form between nodes separated by shorter distances. This approach has been developed for unipartite networks, and relatively little is known about its applicability to bipartite systems. Here, we fully analyze a simple latent-geometric model of bipartite networks and show that this model explains the peculiar structural properties of many real bipartite systems, including the distributions of common neighbors and bipartite clustering. We also analyze the geometric information loss in one-mode projections in this model and propose an efficient method to infer the latent pairwise distances between nodes. Uncovering the latent geometry underlying real bipartite networks can find applications in diverse domains, ranging from constructing efficient recommender systems to understanding cell metabolism.

  6. Fractal Geometry and Stochastics V

    CERN Document Server

    Falconer, Kenneth; Zähle, Martina

    2015-01-01

    This book brings together leading contributions from the fifth conference on Fractal Geometry and Stochastics held in Tabarz, Germany, in March 2014. The book is divided into five sections covering different facets of this fast developing area: geometric measure theory, self-similar fractals and recurrent structures, analysis and algebra on fractals, multifractal theory, and random constructions. There are state-of-the-art surveys as well as papers highlighting more specific recent advances. The authors are world-experts who present their topics comprehensibly and attractively. The book provides an accessible gateway to the subject for newcomers as well as a reference for recent developments for specialists. Authors include: Krzysztof Barański, Julien Barral, Kenneth Falconer, De-Jun Feng, Peter J. Grabner, Rostislav Grigorchuk, Michael Hinz, Stéphane Jaffard, Maarit Järvenpää, Antti Käenmäki, Marc Kesseböhmer, Michel Lapidus, Klaus Mecke, Mark Pollicott,  Michał Rams, Pablo Shmerkin, and András Te...

  7. Stochastic geometry in PRIZMA code

    International Nuclear Information System (INIS)

    Malyshkin, G. N.; Kashaeva, E. A.; Mukhamadiev, R. F.

    2007-01-01

    The paper describes a method used to simulate radiation transport through random media - randomly placed grains in a matrix material. The method models the medium consequently from one grain crossed by particle trajectory to another. Like in the Limited Chord Length Sampling (LCLS) method, particles in grains are tracked in the actual grain geometry, but unlike LCLS, the medium is modeled using only Matrix Chord Length Sampling (MCLS) from the exponential distribution and it is not necessary to know the grain chord length distribution. This helped us extend the method to media with randomly oriented arbitrarily shaped convex grains. Other extensions include multicomponent media - grains of several sorts, and polydisperse media - grains of different sizes. Sort and size distributions of crossed grains were obtained and an algorithm was developed for sampling grain orientations and positions. Special consideration was given to medium modeling at the boundary of the stochastic region. The method was implemented in the universal 3D Monte Carlo code PRIZMA. The paper provides calculated results for a model problem where we determine volume fractions of modeled components crossed by particle trajectories. It also demonstrates the use of biased sampling techniques implemented in PRIZMA for solving a problem of deep penetration in model random media. Described are calculations for the spectral response of a capacitor dose detector whose anode was modeled with account for its stochastic structure. (authors)

  8. The geometry of population genetics

    CERN Document Server

    Akin, Ethan

    1979-01-01

    The differential equations which model the action of selection and recombination are nonlinear equations which are impossible to It is even difficult to describe in general the solve explicitly. Recently, Shahshahani began using qualitative behavior of solutions. differential geometry to study these equations [28]. with this mono­ graph I hope to show that his ideas illuminate many aspects of pop­ ulation genetics. Among these are his proof and clarification of Fisher's Fundamental Theorem of Natural Selection and Kimura's Maximum Principle and also the effect of recombination on entropy. We also discover the relationship between two classic measures of 2 genetic distance: the x measure and the arc-cosine measure. There are two large applications. The first is a precise definition of the biological concept of degree of epistasis which applies to general (i.e. frequency dependent) forms of selection. The second is the unexpected appearance of cycling. We show that cycles can occur in the two-locus-two-allele...

  9. Topics in Cubic Special Geometry

    CERN Document Server

    Bellucci, Stefano; Roychowdhury, Raju

    2011-01-01

    We reconsider the sub-leading quantum perturbative corrections to N=2 cubic special Kaehler geometries. Imposing the invariance under axion-shifts, all such corrections (but the imaginary constant one) can be introduced or removed through suitable, lower unitriangular symplectic transformations, dubbed Peccei-Quinn (PQ) transformations. Since PQ transformations do not belong to the d=4 U-duality group G4, in symmetric cases they generally have a non-trivial action on the unique quartic invariant polynomial I4 of the charge representation R of G4. This leads to interesting phenomena in relation to theory of extremal black hole attractors; namely, the possibility to make transitions between different charge orbits of R, with corresponding change of the supersymmetry properties of the supported attractor solutions. Furthermore, a suitable action of PQ transformations can also set I4 to zero, or vice versa it can generate a non-vanishing I4: this corresponds to transitions between "large" and "small" charge orbit...

  10. Electron dynamics in solid state via time varying wavevectors

    Science.gov (United States)

    Khaneja, Navin

    2018-06-01

    In this paper, we study electron wavepacket dynamics in electric and magnetic fields. We rigorously derive the semiclassical equations of electron dynamics in electric and magnetic fields. We do it both for free electron and electron in a periodic potential. We do this by introducing time varying wavevectors k(t). In the presence of magnetic field, our wavepacket reproduces the classical cyclotron orbits once the origin of the Schröedinger equation is correctly chosen to be center of cyclotron orbit. In the presence of both electric and magnetic fields, our equations for wavepacket dynamics differ from classical Lorentz force equations. We show that in a periodic potential, on application of electric field, the electron wave function adiabatically follows the wavefunction of a time varying Bloch wavevector k(t), with its energies suitably shifted with time. We derive the effective mass equation and discuss conduction in conductors and insulators.

  11. Performance of Traffic Noise Barriers with Varying Cross-Section

    Directory of Open Access Journals (Sweden)

    Sanja Grubeša

    2011-05-01

    Full Text Available The efficiency of noise barriers largely depends on their geometry. In this paper, the performance of noise barriers was simulated using the numerical Boundary Element Method (BEM. Traffic noise was particularly considered with its standardized noise spectrum adapted to human hearing. The cross-section of the barriers was varied with the goal of finding the optimum shape in comparison to classical rectangular barriers. The barrier performance was calculated at different receiver points for a fixed barrier height and source position. The magnitude of the insertion loss parameter was used to evaluate the performance change, both in one-third octave bands and as the broadband mean insertion loss value. The proposed barriers of varying cross-section were also compared with a typical T-shape barrier of the same height.

  12. Reproducibility of computer-aided detection system in digital mammograms

    International Nuclear Information System (INIS)

    Kim, Seung Ja; Cho, Nariya; Cha, Joo Hee; Chung, Hye Kyung; Lee, Sin Ho; Cho, Kyung Soo; Kim, Sun Mi; Moon, Woo Kyung

    2005-01-01

    To evaluate the reproducibility of the computer-aided detection (CAD) system for digital mammograms. We applied the CAD system (ImageChecker M1000-DM, version 3.1; R2 Technology) to full field digital mammograms. These mammograms were taken twice at an interval of 10-45 days (mean:25 days) for 34 preoperative patients (breast cancer n=27, benign disease n=7, age range:20-66 years, mean age:47.9 years). On the mammograms, lesions were visible in 19 patients and these were depicted as 15 masses and 12 calcification clusters. We analyzed the sensitivity, the false positive rate (FPR) and the reproducibility of the CAD marks. The broader sensitivities of the CAD system were 80% (12 of 15), 67%(10 of 15) for masses and those for calcification clusters were 100% (12 of 12). The strict sensitivities were 50% (15 of 30) and 50% (15 of 30) for masses and 92% (22 of 24) and 79% (19 of 24) for the clusters. The FPR for the masses was 0.21-0.22/image, the FPR for the clusters was 0.03-0.04/image and the total FPR was 0.24-0.26/image. Among 132 mammography images, the identical images regardless of the existence of CAD marks were 59% (78 of 132), and the identical images with CAD marks were 22% (15 of 69). The reproducibility of the CAD marks for the true positive mass was 67% (12 of 18) and 71% (17 of 24) for the true positive cluster. The reproducibility of CAD marks for the false positive mass was 8% (4 of 53), and the reproducibility of CAD marks for the false positive clusters was 14% (1 of 7). The reproducibility of the total mass marks was 23% (16 of 71), and the reproducibility of the total cluster marks was 58% (18 of 31). CAD system showed higher sensitivity and reproducibility of CAD marks for the calcification clusters which are related to breast cancer. Yet the overall reproducibility of CAD marks was low; therefore, the CAD system must be applied considering this limitation

  13. A SPECT reconstruction method for extending parallel to non-parallel geometries

    International Nuclear Information System (INIS)

    Wen Junhai; Liang Zhengrong

    2010-01-01

    Due to its simplicity, parallel-beam geometry is usually assumed for the development of image reconstruction algorithms. The established reconstruction methodologies are then extended to fan-beam, cone-beam and other non-parallel geometries for practical application. This situation occurs for quantitative SPECT (single photon emission computed tomography) imaging in inverting the attenuated Radon transform. Novikov reported an explicit parallel-beam formula for the inversion of the attenuated Radon transform in 2000. Thereafter, a formula for fan-beam geometry was reported by Bukhgeim and Kazantsev (2002 Preprint N. 99 Sobolev Institute of Mathematics). At the same time, we presented a formula for varying focal-length fan-beam geometry. Sometimes, the reconstruction formula is so implicit that we cannot obtain the explicit reconstruction formula in the non-parallel geometries. In this work, we propose a unified reconstruction framework for extending parallel-beam geometry to any non-parallel geometry using ray-driven techniques. Studies by computer simulations demonstrated the accuracy of the presented unified reconstruction framework for extending parallel-beam to non-parallel geometries in inverting the attenuated Radon transform.

  14. The influence of the geometry and electrical characteristics on the formation of the atmospheric pressure plasma jet

    International Nuclear Information System (INIS)

    Sobota, A; Guaitella, O; Rousseau, A

    2014-01-01

    An extensive electrical study was performed on a coaxial geometry atmospheric pressure plasma jet source in helium, driven by 30 kHz sine voltage. Two modes of operation were observed, a highly reproducible low-power mode that features the emission of one plasma bullet per voltage period and an erratic high-power mode in which micro-discharges appear around the grounded electrode. The minimum of power transfer efficiency corresponds to the transition between the two modes. Effective capacitance was identified as a varying property influenced by the discharge and the dissipated power. The charge carried by plasma bullets was found to be a small fraction of charge produced in the source irrespective of input power and configuration of the grounded electrode. The biggest part of the produced charge stays localized in the plasma source and below the grounded electrode, in the range 1.2–3.3 nC for ground length of 3–8 mm. (paper)

  15. Using prediction markets to estimate the reproducibility of scientific research

    Science.gov (United States)

    Dreber, Anna; Pfeiffer, Thomas; Almenberg, Johan; Isaksson, Siri; Wilson, Brad; Chen, Yiling; Nosek, Brian A.; Johannesson, Magnus

    2015-01-01

    Concerns about a lack of reproducibility of statistically significant results have recently been raised in many fields, and it has been argued that this lack comes at substantial economic costs. We here report the results from prediction markets set up to quantify the reproducibility of 44 studies published in prominent psychology journals and replicated in the Reproducibility Project: Psychology. The prediction markets predict the outcomes of the replications well and outperform a survey of market participants’ individual forecasts. This shows that prediction markets are a promising tool for assessing the reproducibility of published scientific results. The prediction markets also allow us to estimate probabilities for the hypotheses being true at different testing stages, which provides valuable information regarding the temporal dynamics of scientific discovery. We find that the hypotheses being tested in psychology typically have low prior probabilities of being true (median, 9%) and that a “statistically significant” finding needs to be confirmed in a well-powered replication to have a high probability of being true. We argue that prediction markets could be used to obtain speedy information about reproducibility at low cost and could potentially even be used to determine which studies to replicate to optimally allocate limited resources into replications. PMID:26553988

  16. Validation and reproducibility of an Australian caffeine food frequency questionnaire.

    Science.gov (United States)

    Watson, E J; Kohler, M; Banks, S; Coates, A M

    2017-08-01

    The aim of this study was to measure validity and reproducibility of a caffeine food frequency questionnaire (C-FFQ) developed for the Australian population. The C-FFQ was designed to assess average daily caffeine consumption using four categories of food and beverages including; energy drinks; soft drinks/soda; coffee and tea and chocolate (food and drink). Participants completed a seven-day food diary immediately followed by the C-FFQ on two consecutive days. The questionnaire was first piloted in 20 adults, and then, a validity/reproducibility study was conducted (n = 90 adults). The C-FFQ showed moderate correlations (r = .60), fair agreement (mean difference 63 mg) and reasonable quintile rankings indicating fair to moderate agreement with the seven-day food diary. To test reproducibility, the C-FFQ was compared to itself and showed strong correlations (r = .90), good quintile rankings and strong kappa values (κ = 0.65), indicating strong reproducibility. The C-FFQ shows adequate validity and reproducibility and will aid researchers in Australia to quantify caffeine consumption.

  17. Using prediction markets to estimate the reproducibility of scientific research.

    Science.gov (United States)

    Dreber, Anna; Pfeiffer, Thomas; Almenberg, Johan; Isaksson, Siri; Wilson, Brad; Chen, Yiling; Nosek, Brian A; Johannesson, Magnus

    2015-12-15

    Concerns about a lack of reproducibility of statistically significant results have recently been raised in many fields, and it has been argued that this lack comes at substantial economic costs. We here report the results from prediction markets set up to quantify the reproducibility of 44 studies published in prominent psychology journals and replicated in the Reproducibility Project: Psychology. The prediction markets predict the outcomes of the replications well and outperform a survey of market participants' individual forecasts. This shows that prediction markets are a promising tool for assessing the reproducibility of published scientific results. The prediction markets also allow us to estimate probabilities for the hypotheses being true at different testing stages, which provides valuable information regarding the temporal dynamics of scientific discovery. We find that the hypotheses being tested in psychology typically have low prior probabilities of being true (median, 9%) and that a "statistically significant" finding needs to be confirmed in a well-powered replication to have a high probability of being true. We argue that prediction markets could be used to obtain speedy information about reproducibility at low cost and could potentially even be used to determine which studies to replicate to optimally allocate limited resources into replications.

  18. Field and numerical descriptions of fracture geometries and terminations in chalk containing chert layers and inclusions; implications for groundwater flow in Danish chalk aquifers

    Science.gov (United States)

    Seyum, S.

    2017-12-01

    conditions that reproduce measured fracture geometries. The results of this study provide predictive, field-supported fracture geometries for flow models and, with appropriate changes to the parameters, the methodology is applicable to describing fracture geometries in chalk hydrocarbon systems.

  19. Characterization and reproducibility of HepG2 hanging drop spheroids toxicology in vitro.

    Science.gov (United States)

    Hurrell, Tracey; Ellero, Andrea Antonio; Masso, Zelie Flavienne; Cromarty, Allan Duncan

    2018-02-21

    Hepatotoxicity remains a major challenge in drug development despite preclinical toxicity screening using hepatocytes of human origin. To overcome some limitations of reproducing the hepatic phenotype, more structurally and functionally authentic cultures in vitro can be introduced by growing cells in 3D spheroid cultures. Characterisation and reproducibility of HepG2 spheroid cultures using a high-throughput hanging drop technique was performed and features contributing to potential phenotypic variation highlighted. Cultured HepG2 cells were seeded into Perfecta 3D® 96-well hanging drop plates and assessed over time for morphology, viability, cell cycle distribution, protein content and protein-mass profiles. Divergent aspects which were assessed included cell stocks, seeding density, volume of culture medium and use of extracellular matrix additives. Hanging drops are advantageous due to no complex culture matrix being present, enabling background free extractions for downstream experimentation. Varying characteristics were observed across cell stocks and batches, seeding density, culture medium volume and extracellular matrix when using immortalized HepG2 cells. These factors contribute to wide-ranging cellular responses and highlights concerns with respect to generating a reproducible phenotype in HepG2 hanging drop spheroids. Copyright © 2018 Elsevier Ltd. All rights reserved.

  20. Quantum groups: Geometry and applications

    International Nuclear Information System (INIS)

    Chu, C.S.

    1996-01-01

    The main theme of this thesis is a study of the geometry of quantum groups and quantum spaces, with the hope that they will be useful for the construction of quantum field theory with quantum group symmetry. The main tool used is the Faddeev-Reshetikhin-Takhtajan description of quantum groups. A few content-rich examples of quantum complex spaces with quantum group symmetry are treated in details. In chapter 1, the author reviews some of the basic concepts and notions for Hopf algebras and other background materials. In chapter 2, he studies the vector fields of quantum groups. A compact realization of these vector fields as pseudodifferential operators acting on the linear quantum spaces is given. In chapter 3, he describes the quantum sphere as a complex quantum manifold by means of a quantum stereographic projection. A covariant calculus is introduced. An interesting property of this calculus is the existence of a one-form realization of the exterior differential operator. The concept of a braided comodule is introduced and a braided algebra of quantum spheres is constructed. In chapter 4, the author considers the more general higher dimensional quantum complex projective spaces and the quantum Grassman manifolds. Differential calculus, integration and braiding can be introduced as in the one dimensional case. Finally, in chapter 5, he studies the framework of quantum principal bundle and construct the q-deformed Dirac monopole as a quantum principal bundle with a quantum sphere as the base and a U(1) with non-commutative calculus as the fiber. The first Chern class can be introduced and integrated to give the monopole charge

  1. The geometry of elementary particles

    International Nuclear Information System (INIS)

    Lov, T.R.

    1987-01-01

    A new model of elementary particles based on the geometry of Quantum deSitter space QdS = SU (3,2)/(SU(3,1) x U(1)) is introduced and studied. QdS is a complexification of quantization of anti-de Sitter space, AdS = SO(3,2)/SO(3,1), which in recent years had played a pivotal role in supergravity. The nontrival principle fiber bundle has total space SU(3,2), fiber SU(3,1) x U(1) and base QdS. In this setting, the standard recipes for Yang-Mills fields don't work. These require connections and the associated covariant derivatives. Here it is shown that the Lie derivatives, not the covariant derivatives are important in quantization. In this setting, the no-go theorems are not valid. This new quantum mechanics leads to a model of elementary particles as vertical vector fields in the bundle with interaction via the Lie bracket. There are five physical interactions modelled by the bracket interaction. The quantum numbers are identified as the roots of su(3,2) and are preserved under the bracket interaction. The model explains conservation of charge, baryon number, lepton number, parity and the heirarchy problem. Since the bracket is the curvature of a homogeneous space, particles are then the curvature of QdS. This model for particles is consistent with the requirements of General Relativity. Furthermore, since the curvature tensor is built from the quantized wave functions, the curvature tensor is quantized and this is quantum theory of gravity

  2. The quest for improved reproducibility in MALDI mass spectrometry.

    Science.gov (United States)

    O'Rourke, Matthew B; Djordjevic, Steven P; Padula, Matthew P

    2018-03-01

    Reproducibility has been one of the biggest hurdles faced when attempting to develop quantitative protocols for MALDI mass spectrometry. The heterogeneous nature of sample recrystallization has made automated sample acquisition somewhat "hit and miss" with manual intervention needed to ensure that all sample spots have been analyzed. In this review, we explore the last 30 years of literature and anecdotal evidence that has attempted to address and improve reproducibility in MALDI MS. Though many methods have been attempted, we have discovered a significant publication history surrounding the use of nitrocellulose as a substrate to improve homogeneity of crystal formation and therefore reproducibility. We therefore propose that this is the most promising avenue of research for developing a comprehensive and universal preparation protocol for quantitative MALDI MS analysis. © 2016 Wiley Periodicals, Inc. Mass Spec Rev 37:217-228, 2018. © 2016 Wiley Periodicals, Inc.

  3. Dysplastic naevus: histological criteria and their inter-observer reproducibility.

    Science.gov (United States)

    Hastrup, N; Clemmensen, O J; Spaun, E; Søndergaard, K

    1994-06-01

    Forty melanocytic lesions were examined in a pilot study, which was followed by a final series of 100 consecutive melanocytic lesions, in order to evaluate the inter-observer reproducibility of the histological criteria proposed for the dysplastic naevus. The specimens were examined in a blind fashion by four observers. Analysis by kappa statistics showed poor reproducibility of nuclear features, while reproducibility of architectural features was acceptable, improving in the final series. Consequently, we cannot apply the combined criteria of cytological and architectural features with any confidence in the diagnosis of dysplastic naevus, and, until further studies have documented that architectural criteria alone will suffice in the diagnosis of dysplastic naevus, we, as pathologists, shall avoid this term.

  4. Relevant principal factors affecting the reproducibility of insect primary culture.

    Science.gov (United States)

    Ogata, Norichika; Iwabuchi, Kikuo

    2017-06-01

    The primary culture of insect cells often suffers from problems with poor reproducibility in the quality of the final cell preparations. The cellular composition of the explants (cell number and cell types), surgical methods (surgical duration and surgical isolation), and physiological and genetic differences between donors may be critical factors affecting the reproducibility of culture. However, little is known about where biological variation (interindividual differences between donors) ends and technical variation (variance in replication of culture conditions) begins. In this study, we cultured larval fat bodies from the Japanese rhinoceros beetle, Allomyrina dichotoma, and evaluated, using linear mixed models, the effect of interindividual variation between donors on the reproducibility of the culture. We also performed transcriptome analysis of the hemocyte-like cells mainly seen in the cultures using RNA sequencing and ultrastructural analyses of hemocytes using a transmission electron microscope, revealing that the cultured cells have many characteristics of insect hemocytes.

  5. Description of SSG Geometry - phase 1

    DEFF Research Database (Denmark)

    Margheritini, Lucia; Kofoed, Jens Peter

    The purpose of the study is to define the optimized geometry for the SSG in Svaheia, Norway and to provide the responsible for the turbines with useful information to their work.......The purpose of the study is to define the optimized geometry for the SSG in Svaheia, Norway and to provide the responsible for the turbines with useful information to their work....

  6. Increasing insightful thinking in analytic geometry

    NARCIS (Netherlands)

    Timmer, Mark; Verhoef, Neeltje Cornelia

    Elsewhere in this issue Ferdinand Verhulst described the discussion of the interaction of analysis and geometry in the 19th century. In modern times such discussions come up again and again. As of 2014, synthetic geometry will not be part of the Dutch 'vwo - mathematics B' programme anymore.

  7. Symposium on Differential Geometry and Differential Equations

    CERN Document Server

    Berger, Marcel; Bryant, Robert

    1987-01-01

    The DD6 Symposium was, like its predecessors DD1 to DD5 both a research symposium and a summer seminar and concentrated on differential geometry. This volume contains a selection of the invited papers and some additional contributions. They cover recent advances and principal trends in current research in differential geometry.

  8. Curvature tensor copies in affine geometry

    International Nuclear Information System (INIS)

    Srivastava, P.P.

    1981-01-01

    The sets of space-time and spin-connections which give rise to the same curvature tensor are constructed. The corresponding geometries are compared. Results are illustrated by an explicit calculation and comment on the copies in Einstein-Cartan and Weyl-Cartan geometries. (Author) [pt

  9. Fractal geometry of high temperature superconductors

    International Nuclear Information System (INIS)

    Mosolov, A.B.

    1989-01-01

    Microstructural geometry of superconducting structural composites of Ag-Yba 2 Cu 3 O x system with a volumetric shave of silver from 0 to 60% is investigated by light and electron microscopy methods. It is ascertained that the structure of cermets investigated is characterized by fractal geometry which is sufficient for describing the electrical and mechanical properties of these materials

  10. Quantification of variability in bedform geometry

    NARCIS (Netherlands)

    van der Mark, C.F.; Blom, Astrid; Hulscher, Suzanne J.M.H.

    2008-01-01

    We analyze the variability in bedform geometry in laboratory and field studies. Even under controlled steady flow conditions in laboratory flumes, bedforms are irregular in size, shape, and spacing, also in case of well-sorted sediment. Our purpose is to quantify the variability in bedform geometry.

  11. Random geometry and Yang-Mills theory

    International Nuclear Information System (INIS)

    Froehlich, J.

    1981-01-01

    The author states various problems and discusses a very few preliminary rigorous results in a branch of mathematics and mathematical physics which one might call random (or stochastic) geometry. Furthermore, he points out why random geometry is important in the quantization of Yang-Mills theory. (Auth.)

  12. The Geometry of the Universe: Part 2

    Science.gov (United States)

    Francis, Stephanie

    2009-01-01

    Hyperbolic geometry occurs on hyperbolic planes--the most commonly cited one being a saddle shape. In this article, the author explores negative hyperbolic curvature, and provides a detailed description of how she constructed two hyperbolic paraboloids. Hyperbolic geometry occurs on surfaces that have negative curvature. (Contains 11 figures and 4…

  13. Poisson geometry from a Dirac perspective

    Science.gov (United States)

    Meinrenken, Eckhard

    2018-03-01

    We present proofs of classical results in Poisson geometry using techniques from Dirac geometry. This article is based on mini-courses at the Poisson summer school in Geneva, June 2016, and at the workshop Quantum Groups and Gravity at the University of Waterloo, April 2016.

  14. An approach for management of geometry data

    Science.gov (United States)

    Dube, R. P.; Herron, G. J.; Schweitzer, J. E.; Warkentine, E. R.

    1980-01-01

    The strategies for managing Integrated Programs for Aerospace Design (IPAD) computer-based geometry are described. The computer model of geometry is the basis for communication, manipulation, and analysis of shape information. IPAD's data base system makes this information available to all authorized departments in a company. A discussion of the data structures and algorithms required to support geometry in IPIP (IPAD's data base management system) is presented. Through the use of IPIP's data definition language, the structure of the geometry components is defined. The data manipulation language is the vehicle by which a user defines an instance of the geometry. The manipulation language also allows a user to edit, query, and manage the geometry. The selection of canonical forms is a very important part of the IPAD geometry. IPAD has a canonical form for each entity and provides transformations to alternate forms; in particular, IPAD will provide a transformation to the ANSI standard. The DBMS schemas required to support IPAD geometry are explained.

  15. Transformasi Geometri Rotasi Berbantuan Software Geogebra

    Directory of Open Access Journals (Sweden)

    Muhamad Hanafi

    2018-02-01

    Full Text Available Penelitian  ini bertujuan untuk membantu visualisasi dan menemukan konsep pada Transformasi geometri Rotasi di titik Pusat  dengan menggunakan software GeoGebra. Penelitian ini mengulas tentang Koordinat Kartesius dan Polar, dan selanjutntya Transformasi geometri Rotasi di titik Pusat .

  16. Analisis Keterampilan Geometri Siswa Dalam Memecahkan Masalah Geometri Berdasarkan Tingkat Berpikir Van Hiele

    OpenAIRE

    Muhassanah, Nuraini; Sujadi, Imam; Riyadi, Riyadi

    2014-01-01

    The objective of this research was to describe the VIII grade students geometry skills atSMP N 16 Surakarta in the level 0 (visualization), level 1 (analysis), and level 2 (informaldeduction) van Hiele level of thinking in solving the geometry problem. This research was aqualitative research in the form of case study analyzing deeply the students geometry skill insolving the geometry problem based on van Hiele level of thingking. The subject of this researchwas nine students of VIII grade at ...

  17. The design of geometry teaching: learning from the geometry textbooks of Godfrey and Siddons

    OpenAIRE

    Fujita, Taro; Jones, Keith

    2002-01-01

    Deciding how to teach geometry remains a demanding task with one of major arguments being about how to combine the intuitive and deductive aspects of geometry into an effective teaching design. In order to try to obtain an insight into tackling this issue, this paper reports an analysis of innovative geometry textbooks which were published in the early part of the 20th Century, a time when significant efforts were being made to improve the teaching and learning of geometry. The analysis sugge...

  18. Reproducibility of clinical research in critical care: a scoping review.

    Science.gov (United States)

    Niven, Daniel J; McCormick, T Jared; Straus, Sharon E; Hemmelgarn, Brenda R; Jeffs, Lianne; Barnes, Tavish R M; Stelfox, Henry T

    2018-02-21

    The ability to reproduce experiments is a defining principle of science. Reproducibility of clinical research has received relatively little scientific attention. However, it is important as it may inform clinical practice, research agendas, and the design of future studies. We used scoping review methods to examine reproducibility within a cohort of randomized trials examining clinical critical care research and published in the top general medical and critical care journals. To identify relevant clinical practices, we searched the New England Journal of Medicine, The Lancet, and JAMA for randomized trials published up to April 2016. To identify a comprehensive set of studies for these practices, included articles informed secondary searches within other high-impact medical and specialty journals. We included late-phase randomized controlled trials examining therapeutic clinical practices in adults admitted to general medical-surgical or specialty intensive care units (ICUs). Included articles were classified using a reproducibility framework. An original study was the first to evaluate a clinical practice. A reproduction attempt re-evaluated that practice in a new set of participants. Overall, 158 practices were examined in 275 included articles. A reproduction attempt was identified for 66 practices (42%, 95% CI 33-50%). Original studies reported larger effects than reproduction attempts (primary endpoint, risk difference 16.0%, 95% CI 11.6-20.5% vs. 8.4%, 95% CI 6.0-10.8%, P = 0.003). More than half of clinical practices with a reproduction attempt demonstrated effects that were inconsistent with the original study (56%, 95% CI 42-68%), among which a large number were reported to be efficacious in the original study and to lack efficacy in the reproduction attempt (34%, 95% CI 19-52%). Two practices reported to be efficacious in the original study were found to be harmful in the reproduction attempt. A minority of critical care practices with research published

  19. Reproducibility of graph metrics in fMRI networks

    Directory of Open Access Journals (Sweden)

    Qawi K Telesford

    2010-12-01

    Full Text Available The reliability of graph metrics calculated in network analysis is essential to the interpretation of complex network organization. These graph metrics are used to deduce the small-world properties in networks. In this study, we investigated the test-retest reliability of graph metrics from functional magnetic resonance imaging (fMRI data collected for two runs in 45 healthy older adults. Graph metrics were calculated on data for both runs and compared using intraclass correlation coefficient (ICC statistics and Bland-Altman (BA plots. ICC scores describe the level of absolute agreement between two measurements and provide a measure of reproducibility. For mean graph metrics, ICC scores were high for clustering coefficient (ICC=0.86, global efficiency (ICC=0.83, path length (ICC=0.79, and local efficiency (ICC=0.75; the ICC score for degree was found to be low (ICC=0.29. ICC scores were also used to generate reproducibility maps in brain space to test voxel-wise reproducibility for unsmoothed and smoothed data. Reproducibility was uniform across the brain for global efficiency and path length, but was only high in network hubs for clustering coefficient, local efficiency and degree. BA plots were used to test the measurement repeatability of all graph metrics. All graph metrics fell within the limits for repeatability. Together, these results suggest that with exception of degree, mean graph metrics are reproducible and suitable for clinical studies. Further exploration is warranted to better understand reproducibility across the brain on a voxel-wise basis.

  20. Effective Form of Reproducing the Total Financial Potential of Ukraine

    Directory of Open Access Journals (Sweden)

    Portna Oksana V.

    2015-03-01

    Full Text Available Development of scientific principles of reproducing the total financial potential of the country and its effective form is an urgent problem both in theoretical and practical aspects of the study, the solution of which is intended to ensure the active mobilization and effective use of the total financial potential of Ukraine, and as a result — its expanded reproduction as well, which would contribute to realization of the internal capacities for stabilization of the national economy. The purpose of the article is disclosing the essence of the effective form of reproducing the total financial potential of the country, analyzing the results of reproducing the total financial potential of Ukraine. It has been proved that the basis for the effective form of reproducing the total financial potential of the country is the volume and flow of resources, which are associated with the «real» economy, affect the dynamics of GDP and define it, i.e. resource and process forms of reproducing the total financial potential of Ukraine (which precede the effective one. The analysis of reproducing the total financial potential of Ukraine has shown that in the analyzed period there was an increase in the financial possibilities of the country, but steady dynamics of reduction of the total financial potential was observed. If we consider the amount of resources involved in production, creating a net value added and GDP, it occurs on a restricted basis. Growth of the total financial potential of Ukraine is connected only with extensive quantitative factors rather than intensive qualitative changes.

  1. The MIMIC Code Repository: enabling reproducibility in critical care research.

    Science.gov (United States)

    Johnson, Alistair Ew; Stone, David J; Celi, Leo A; Pollard, Tom J

    2018-01-01

    Lack of reproducibility in medical studies is a barrier to the generation of a robust knowledge base to support clinical decision-making. In this paper we outline the Medical Information Mart for Intensive Care (MIMIC) Code Repository, a centralized code base for generating reproducible studies on an openly available critical care dataset. Code is provided to load the data into a relational structure, create extractions of the data, and reproduce entire analysis plans including research studies. Concepts extracted include severity of illness scores, comorbid status, administrative definitions of sepsis, physiologic criteria for sepsis, organ failure scores, treatment administration, and more. Executable documents are used for tutorials and reproduce published studies end-to-end, providing a template for future researchers to replicate. The repository's issue tracker enables community discussion about the data and concepts, allowing users to collaboratively improve the resource. The centralized repository provides a platform for users of the data to interact directly with the data generators, facilitating greater understanding of the data. It also provides a location for the community to collaborate on necessary concepts for research progress and share them with a larger audience. Consistent application of the same code for underlying concepts is a key step in ensuring that research studies on the MIMIC database are comparable and reproducible. By providing open source code alongside the freely accessible MIMIC-III database, we enable end-to-end reproducible analysis of electronic health records. © The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association.

  2. Language-Agnostic Reproducible Data Analysis Using Literate Programming.

    Science.gov (United States)

    Vassilev, Boris; Louhimo, Riku; Ikonen, Elina; Hautaniemi, Sampsa

    2016-01-01

    A modern biomedical research project can easily contain hundreds of analysis steps and lack of reproducibility of the analyses has been recognized as a severe issue. While thorough documentation enables reproducibility, the number of analysis programs used can be so large that in reality reproducibility cannot be easily achieved. Literate programming is an approach to present computer programs to human readers. The code is rearranged to follow the logic of the program, and to explain that logic in a natural language. The code executed by the computer is extracted from the literate source code. As such, literate programming is an ideal formalism for systematizing analysis steps in biomedical research. We have developed the reproducible computing tool Lir (literate, reproducible computing) that allows a tool-agnostic approach to biomedical data analysis. We demonstrate the utility of Lir by applying it to a case study. Our aim was to investigate the role of endosomal trafficking regulators to the progression of breast cancer. In this analysis, a variety of tools were combined to interpret the available data: a relational database, standard command-line tools, and a statistical computing environment. The analysis revealed that the lipid transport related genes LAPTM4B and NDRG1 are coamplified in breast cancer patients, and identified genes potentially cooperating with LAPTM4B in breast cancer progression. Our case study demonstrates that with Lir, an array of tools can be combined in the same data analysis to improve efficiency, reproducibility, and ease of understanding. Lir is an open-source software available at github.com/borisvassilev/lir.

  3. Physical meaning of the optical reference geometry

    International Nuclear Information System (INIS)

    Abramowicz, M.A.

    1990-09-01

    I show that contrary to a popular misconception the optical reference geometry, introduced a few years ago as a formally possible metric of a 3-space corresponding to a static spacetime, is quite satisfactory also from the physical point of view. The optical reference geometry has a clear physical meaning, as it may be constructed experimentally by measuring light round travel time between static observers. Distances and directions in the optical reference geometry are more strongly connected to experiment than distances and directions in the widely used directly projected metric (discussed e.g. in Landau and Lifshitz textbook. In addition, the optical reference geometry is more natural and convenient than the directly projected one in application to dynamics. In the optical geometry dynamical behaviour of matter is described by concepts and formulae identical to those well known in Newtonian dynamics on a given two dimensional (curved) surface. (author). 22 refs

  4. FINAL REPORT: GEOMETRY AND ELEMENTARY PARTICLE PHYSICS

    Energy Technology Data Exchange (ETDEWEB)

    Singer, Isadore M.

    2008-03-04

    The effect on mathematics of collaborations between high-energy theoretical physics and modern mathematics has been remarkable. Mirror symmetry has revolutionized enumerative geometry, and Seiberg-Witten invariants have greatly simplified the study of four manifolds. And because of their application to string theory, physicists now need to know cohomology theory, characteristic classes, index theory, K-theory, algebraic geometry, differential geometry, and non-commutative geometry. Much more is coming. We are experiencing a deeper contact between the two sciences, which will stimulate new mathematics essential to the physicists’ quest for the unification of quantum mechanics and relativity. Our grant, supported by the Department of Energy for twelve years, has been instrumental in promoting an effective interaction between geometry and string theory, by supporting the Mathematical Physics seminar, postdoc research, collaborations, graduate students and several research papers.

  5. Final Report: Geometry And Elementary Particle Physics

    International Nuclear Information System (INIS)

    Singer, Isadore M.

    2008-01-01

    The effect on mathematics of collaborations between high-energy theoretical physics and modern mathematics has been remarkable. Mirror symmetry has revolutionized enumerative geometry, and Seiberg-Witten invariants have greatly simplified the study of four manifolds. And because of their application to string theory, physicists now need to know cohomology theory, characteristic classes, index theory, K-theory, algebraic geometry, differential geometry, and non-commutative geometry. Much more is coming. We are experiencing a deeper contact between the two sciences, which will stimulate new mathematics essential to the physicists quest for the unification of quantum mechanics and relativity. Our grant, supported by the Department of Energy for twelve years, has been instrumental in promoting an effective interaction between geometry and string theory, by supporting the Mathematical Physics seminar, postdoc research, collaborations, graduate students and several research papers.

  6. Special metrics and group actions in geometry

    CERN Document Server

    Fino, Anna; Musso, Emilio; Podestà, Fabio; Vezzoni, Luigi

    2017-01-01

    The volume is a follow-up to the INdAM meeting “Special metrics and quaternionic geometry” held in Rome in November 2015. It offers a panoramic view of a selection of cutting-edge topics in differential geometry, including 4-manifolds, quaternionic and octonionic geometry, twistor spaces, harmonic maps, spinors, complex and conformal geometry, homogeneous spaces and nilmanifolds, special geometries in dimensions 5–8, gauge theory, symplectic and toric manifolds, exceptional holonomy and integrable systems. The workshop was held in honor of Simon Salamon, a leading international scholar at the forefront of academic research who has made significant contributions to all these subjects. The articles published here represent a compelling testimony to Salamon’s profound and longstanding impact on the mathematical community. Target readership includes graduate students and researchers working in Riemannian and complex geometry, Lie theory and mathematical physics.

  7. Reproducibility and relative validity of food group intake in a food frequency questionnaire developed for Nepalese diet.

    Science.gov (United States)

    Shrestha, Archana; Koju, Rajendra Prasad; Beresford, Shirley A A; Chan, Kwun Chuen Gary; Connell, Frederik A; Karmacharya, Biraj Man; Shrestha, Pramita; Fitzpatrick, Annette L

    2017-08-01

    We developed a food frequency questionnaire (FFQ) designed to measure the dietary practices of adult Nepalese. The present study examined the validity and reproducibility of the FFQ. To evaluate the reproducibility of the FFQ, 116 subjects completed two 115-item FFQ across a four-month interval. Six 24-h dietary recalls were collected (1 each month) to assess the validity of the FFQ. Seven major food groups and 23 subgroups were clustered from the FFQ based on macronutrient composition. Spearman correlation coefficients evaluating reproducibility for all food groups were greater than 0.5, with the exceptions of oil. The correlations varied from 0.41 (oil) to 0.81 (vegetables). All crude spearman coefficients for validity were greater than 0.5 except for dairy products, pizzas/pastas and sausage/burgers. The FFQ was found to be reliable and valid for ranking the intake of food groups for Nepalese dietary intake.

  8. Reproducibility problems of in-service ultrasonic testing results

    International Nuclear Information System (INIS)

    Honcu, E.

    1974-01-01

    The reproducibility of the results of ultrasonic testing is the basic precondition for its successful application in in-service inspection of changes in the quality of components of nuclear power installations. The results of periodic ultrasonic inspections are not satisfactory from the point of view of reproducibility. Regardless, the ultrasonic pulse-type method is suitable for evaluating the quality of most components of nuclear installations and often the sole method which may be recommended for inspection with regard to its technical and economic aspects. (J.B.)

  9. Reproducibility of esophageal scintigraphy using semi-solid yoghurt

    Energy Technology Data Exchange (ETDEWEB)

    Imai, Yukinori; Kinoshita, Manabu; Asakura, Yasushi; Kakinuma, Tohru; Shimoji, Katsunori; Fujiwara, Kenji; Suzuki, Kenji; Miyamae, Tatsuya [Saitama Medical School, Moroyama (Japan)

    1999-10-01

    Esophageal scintigraphy is a non-invasive method which evaluate esophageal function quantitatively. We applied new technique using semi-solid yoghurt, which can evaluate esophageal function in a sitting position. To evaluate the reproducibility of this method, scintigraphy were performed in 16 healthy volunteers. From the result of four swallows except the first one, the mean coefficients of variation in esophageal transit time and esophageal emptying time were 12.8% and 13.4% respectively (interday variation). As regards the interday variation, this method had also good reproducibility from the result on the 2 separate days. (author)

  10. Reproducing Kernel Method for Solving Nonlinear Differential-Difference Equations

    Directory of Open Access Journals (Sweden)

    Reza Mokhtari

    2012-01-01

    Full Text Available On the basis of reproducing kernel Hilbert spaces theory, an iterative algorithm for solving some nonlinear differential-difference equations (NDDEs is presented. The analytical solution is shown in a series form in a reproducing kernel space, and the approximate solution , is constructed by truncating the series to terms. The convergence of , to the analytical solution is also proved. Results obtained by the proposed method imply that it can be considered as a simple and accurate method for solving such differential-difference problems.

  11. Analogy and Dynamic Geometry System Used to Introduce Three-Dimensional Geometry

    Science.gov (United States)

    Mammana, M. F.; Micale, B.; Pennisi, M.

    2012-01-01

    We present a sequence of classroom activities on Euclidean geometry, both plane and space geometry, used to make three dimensional geometry more catchy and simple. The activity consists of a guided research activity that leads the students to discover unexpected properties of two apparently distant geometrical entities, quadrilaterals and…

  12. Drawing Dynamic Geometry Figures Online with Natural Language for Junior High School Geometry

    Science.gov (United States)

    Wong, Wing-Kwong; Yin, Sheng-Kai; Yang, Chang-Zhe

    2012-01-01

    This paper presents a tool for drawing dynamic geometric figures by understanding the texts of geometry problems. With the tool, teachers and students can construct dynamic geometric figures on a web page by inputting a geometry problem in natural language. First we need to build the knowledge base for understanding geometry problems. With the…

  13. Determining the optimal number of independent components for reproducible transcriptomic data analysis.

    Science.gov (United States)

    Kairov, Ulykbek; Cantini, Laura; Greco, Alessandro; Molkenov, Askhat; Czerwinska, Urszula; Barillot, Emmanuel; Zinovyev, Andrei

    2017-09-11

    Independent Component Analysis (ICA) is a method that models gene expression data as an action of a set of statistically independent hidden factors. The output of ICA depends on a fundamental parameter: the number of components (factors) to compute. The optimal choice of this parameter, related to determining the effective data dimension, remains an open question in the application of blind source separation techniques to transcriptomic data. Here we address the question of optimizing the number of statistically independent components in the analysis of transcriptomic data for reproducibility of the components in multiple runs of ICA (within the same or within varying effective dimensions) and in multiple independent datasets. To this end, we introduce ranking of independent components based on their stability in multiple ICA computation runs and define a distinguished number of components (Most Stable Transcriptome Dimension, MSTD) corresponding to the point of the qualitative change of the stability profile. Based on a large body of data, we demonstrate that a sufficient number of dimensions is required for biological interpretability of the ICA decomposition and that the most stable components with ranks below MSTD have more chances to be reproduced in independent studies compared to the less stable ones. At the same time, we show that a transcriptomics dataset can be reduced to a relatively high number of dimensions without losing the interpretability of ICA, even though higher dimensions give rise to components driven by small gene sets. We suggest a protocol of ICA application to transcriptomics data with a possibility of prioritizing components with respect to their reproducibility that strengthens the biological interpretation. Computing too few components (much less than MSTD) is not optimal for interpretability of the results. The components ranked within MSTD range have more chances to be reproduced in independent studies.

  14. Primes, Geometry and Condensed Matter

    Directory of Open Access Journals (Sweden)

    Al Rabeh R. H.

    2009-07-01

    Full Text Available Fascination with primes dates back to the Greeks and before. Primes are named by some "the elementary particles of arithmetic" as every nonprime integer is made of a unique set of primes. In this article we point to new connections between primes, geometry and physics which show that primes could be called "the elementary particles of physics" too. This study considers the problem of closely packing similar circles/spheres in 2D/3D space. This is in effect a discretization process of space and the allowable number in a pack is found to lead to some unexpected cases of prime configurations which is independent of the size of the constituents. We next suggest that a non-prime can be considered geometrically as a symmetric collection that is separable (factorable into similar parts- six is two threes or three twos for example. A collection that has no such symmetry is a prime. As a result, a physical prime aggregate is more difficult to split symmetrically resulting in an inherent stability. This "number/physical" stability idea applies to bigger collections made from smaller (prime units leading to larger stable prime structures in a limitless scaling up process. The distribution of primes among numbers can be understood better using the packing ideas described here and we further suggest that differing numbers (and values of distinct prime factors making a nonprime collection is an important factor in determining the probability and method of possible and subsequent disintegration. Disintegration is bound by energy conservation and is closely related to symmetry by Noether theorems. Thinking of condensed matter as the packing of identical elements, we examine plots of the masses of chemical elements of the periodic table, and also those of the elementary particles of physics, and show that prime packing rules seem to play a role in the make up of matter. The plots show convincingly that the growth of prime numbers and that of the masses of

  15. Primes, Geometry and Condensed Matter

    Directory of Open Access Journals (Sweden)

    Al Rabeh R. H.

    2009-07-01

    Full Text Available Fascination with primes dates back to the Greeks and before. Primes are named by some “the elementary particles of arithmetic” as every nonprime integer is made of a unique set of primes. In this article we point to new connections between primes, geometry and physics which show that primes could be called “the elementary particles of physics” too. This study considers the problem of closely packing similar circles / spheres in 2D / 3D space. This is in effect a discretization process of space and the allowable num- ber in a pack is found to lead to some unexpected cases of prime configurations which is independent of the size of the constituents. We next suggest that a non-prime can be considered geometrically as a symmetric collection that is separable (factorable into similar parts- six is two threes or three twos for example. A collection that has no such symmetry is a prime. As a result, a physical prime aggregate is more difficult to split symmetrically resulting in an inherent stability. This “number / physical” stability idea applies to bigger collections made from smaller (prime units leading to larger sta- ble prime structures in a limitless scaling up process. The distribution of primes among numbers can be understood better using the packing ideas described here and we further suggest that differing numbers (and values of distinct prime factors making a nonprime collection is an important factor in determining the probability and method of possible and subsequent disintegration. Disintegration is bound by energy conservation and is closely related to symmetry by Noether theorems. Thinking of condensed matter as the packing of identical elements, we examine plots of the masses of chemical elements of the periodic table, and also those of the elementary particles of physics, and show that prime packing rules seem to play a role in the make up of matter. The plots show con- vincingly that the growth of prime numbers and that

  16. SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research.

    Science.gov (United States)

    Yaniv, Ziv; Lowekamp, Bradley C; Johnson, Hans J; Beare, Richard

    2018-06-01

    Modern scientific endeavors increasingly require team collaborations to construct and interpret complex computational workflows. This work describes an image-analysis environment that supports the use of computational tools that facilitate reproducible research and support scientists with varying levels of software development skills. The Jupyter notebook web application is the basis of an environment that enables flexible, well-documented, and reproducible workflows via literate programming. Image-analysis software development is made accessible to scientists with varying levels of programming experience via the use of the SimpleITK toolkit, a simplified interface to the Insight Segmentation and Registration Toolkit. Additional features of the development environment include user friendly data sharing using online data repositories and a testing framework that facilitates code maintenance. SimpleITK provides a large number of examples illustrating educational and research-oriented image analysis workflows for free download from GitHub under an Apache 2.0 license: github.com/InsightSoftwareConsortium/SimpleITK-Notebooks .

  17. Control of flow geometry using electromagnetic body forcing

    International Nuclear Information System (INIS)

    Rossi, L.; Bocquet, S.; Ferrari, S.; Garcia de la Cruz, J.M.; Lardeau, S.

    2009-01-01

    This paper presents conceptual experiments and simulations aiming at controlling flow geometries. Such flow design is performed by driving electromagnetically a shallow layer of brine, the forcing being generated by a transverse electrical current and different combinations of permanent magnets placed underneath the brine supporting wall. It is shown how different basic flow characteristics can be obtained with a single pair of magnets, by varying the angle with the electrical current. These basic flows are proposed as potential building blocks for advanced and complex flows studies. Three typical flow structures are presented to illustrate these building blocks. The discussion is then extended to multi-scale geometry by using blocks of various sizes. The flow is analysed using complementary experiments and numerical simulations. A good agreement is found between the 3D simulations and the experiments for both velocity and acceleration fields, which allows a higher degree of confidence in designing and modelling such flows. As the control of the flow geometry is important for mixing, in particular at low Reynolds number, we also illustrate the different stirring properties of the electromagnetically forced flows by comparing visualisations of passive scalars. They reveal complementary mixing properties for each of the building blocks.

  18. Steady three-fluid coronal expansion for nonspherical geometries

    International Nuclear Information System (INIS)

    Joselyn, J.; Holzer, T.E.

    1978-01-01

    A steady three-fluid model of the solar coronal expansionk in which 4 He ++ ions (alphas) are treated as a nonminor species, is developed for nonspherically symmetric flow geometries of the general sort thought to be characteristic of coronal holes. It is found that the very high mass fluxes in the low corona, which are associated with rapidly diverging flow geometries, lead to a locally enhanced frictional coupling between protons and alphas and consequently to a significant reduction of the He/H abundance ratio in the lower corona from that normally predicted by multifluid models. In the models considered, the frictional drag on the protons by the alphas (a process neglected in most studies) is found to play an important role near the sun. Heavy ions, other than alphas, are treated as minor species and are seen to exhibit varying responses to the rapidly diverging flow geometries, depending on the ion mass and charge. As for the protons, the frictional effect of the alphas on the heavier ions is found to be significant in the models considered

  19. [The Effect of Observation Geometry on Polarized Skylight Spectrum].

    Science.gov (United States)

    Zhang, Ren-bin; Wang, Ling-mei; Gao, Jun; Wang, Chi

    2015-03-01

    Study on polarized skylight spectral characters while observation geometry changing in different solar zenith angles (SZA), viewing zenith angles (VZA) or relative azimuth angles (RAA). Simulation calculation of cloudless daylight polarimetric spectrum is realized based on the solver, vector discrete ordinate method, of radiative transfer equation. In the Sun's principal and perpendicular plane, the spectral irradiance data, varying at wavelengths in the range between 0.4 and 3 μm, are calculated to extend the atmospheric polarization spectral information under the conditions: the MODTRAN solar reference spectrur is the only illuminant source; the main influencing factors of polarized radiative transfer include underlying surface albedo, aerosol layers and components, and the absorption of trace gases. Simulation analysis results: (1) While the relative azimuth angle is zero, the magnitude of spectrum U/I is lower than 10(-7) and V/I is negligible, the degree of polarization and the spectrum Q/I are shaped like the letter V or mirror-writing U. (2) In twilight, when the Sun is not in FOV of the detector, the polarization of the daytime sky has two maximum near 0.51 and 2.75 μm, and a minimum near 1.5 μm. For arbitrary observation geometry, the spectral signal of V/I may be ignored. According to observation geometry, choosing different spectral bands or polarized signal will be propitious to targets detection.

  20. Investigation of Surface Phenomena in Shocked Tin in Converging Geometry

    Energy Technology Data Exchange (ETDEWEB)

    Rousculp, Christopher L. [Los Alamos National Laboratory; Oro, David Michael [Los Alamos National Laboratory; Griego, Jeffrey Randall [Los Alamos National Laboratory; Turchi, Peter John [Los Alamos National Laboratory; Reinovsky, Robert Emil [Los Alamos National Laboratory; Bradley, Joseph Thomas [Los Alamos National Laboratory; Cheng, Baolian [Los Alamos National Laboratory; Freeman, Matthew Stouten [Los Alamos National Laboratory; Patten, Austin Randall [Los Alamos National Laboratory

    2016-03-21

    There is great interest in the behavior of the free surface of tin under shock loading. While it is known that meso-scale surface imperfections can seed the Richtmyer- Meshkov Instability (RMI) for a surface that is melted on release, much less is known about a tin surface that is solid, but plastically deforming. Here material properties such as shear and yield strength come into play especially in converging geometry. Previous experiments have been driven by direct contact HE. Usually a thin, flat target coupon is fielded with various single-mode, sinusoidal, machined, profiles on the free surface. The free surface is adjacent to either vacuum or an inert receiver gas. Most of these previous driver/target configurations have been nominal planer geometry. With modern HE it has been straightforward to shock tin into melt on release. However it has been challenging to achieve a low enough pressure for solid state on release. Here we propose to extend the existing base of knowledge to include the behavior of the free surface of tin in cylindrical converging geometry. By shock loading a cylindrical tin shell with a magnetically driven cylindrical liner impactor, the free surface evolution can be diagnosed with proton radiography. With the PHELIX capacitor bank, the drive can easily be varied to span the pressure range to achieve solid, mixed, and liquid states on release. A conceptual cylindrical liner and target is shown in Figure 1.

  1. Modeling flow for modified concentric cylinder rheometer geometry

    Science.gov (United States)

    Ekeruche, Karen; Connelly, Kelly; Kavehpour, H. Pirouz

    2016-11-01

    Rheology experiments on biological fluids can be difficult when samples are limited in volume, sensitive to degradation, and delicate to extract from tissues. A probe-like geometry has been developed to perform shear creep experiments on biological fluids and to use the creep response to characterize fluid material properties. This probe geometry is a modified concentric cylinder setup, where the gap is large and we assume the inner cylinder rotates in an infinite fluid. To validate this assumption we perform shear creep tests with the designed probe on Newtonian and non-Newtonian fluids and vary the outer cylinder container diameter. We have also created a numerical model based on the probe geometry setup to compare with experimental results at different outer cylinder diameters. A creep test is modeled by applying rotation to the inner cylinder and solving for the deformation of the fluid throughout the gap. Steady state viscosity values are calculated from creep compliance curves and compared between experimental and numerical results.

  2. Reproducible and expedient rice regeneration system using in vitro ...

    African Journals Online (AJOL)

    Inevitable prerequisite for expedient regeneration in rice is the selection of totipotent explant and developing an apposite combination of growth hormones. Here, we reported a reproducible regeneration protocol in which basal segments of the stem of the in vitro grown rice plants were used as ex-plant. Using the protocol ...

  3. Composting in small laboratory pilots: Performance and reproducibility

    International Nuclear Information System (INIS)

    Lashermes, G.; Barriuso, E.; Le Villio-Poitrenaud, M.; Houot, S.

    2012-01-01

    Highlights: ► We design an innovative small-scale composting device including six 4-l reactors. ► We investigate the performance and reproducibility of composting on a small scale. ► Thermophilic conditions are established by self-heating in all replicates. ► Biochemical transformations, organic matter losses and stabilisation are realistic. ► The organic matter evolution exhibits good reproducibility for all six replicates. - Abstract: Small-scale reactors ( 2 consumption and CO 2 emissions, and characterising the biochemical evolution of organic matter. A good reproducibility was found for the six replicates with coefficients of variation for all parameters generally lower than 19%. An intense self-heating ensured the existence of a spontaneous thermophilic phase in all reactors. The average loss of total organic matter (TOM) was 46% of the initial content. Compared to the initial mixture, the hot water soluble fraction decreased by 62%, the hemicellulose-like fraction by 68%, the cellulose-like fraction by 50% and the lignin-like fractions by 12% in the final compost. The TOM losses, compost stabilisation and evolution of the biochemical fractions were similar to observed in large reactors or on-site experiments, excluding the lignin degradation, which was less important than in full-scale systems. The reproducibility of the process and the quality of the final compost make it possible to propose the use of this experimental device for research requiring a mass reduction of the initial composted waste mixtures.

  4. Intercenter reproducibility of binary typing for Staphylococcus aureus

    NARCIS (Netherlands)

    van Leeuwen, Willem B.; Snoeijers, Sandor; van der Werken-Libregts, Christel; Tuip, Anita; van der Zee, Anneke; Egberink, Diane; de Proost, Monique; Bik, Elisabeth; Lunter, Bjorn; Kluytmans, Jan; Gits, Etty; van Duyn, Inge; Heck, Max; van der Zwaluw, Kim; Wannet, Wim; Noordhoek, Gerda T.; Mulder, Sije; Renders, Nicole; Boers, Miranda; Zaat, Sebastiaan; van der Riet, Daniëlle; Kooistra, Mirjam; Talens, Adriaan; Dijkshoorn, Lenie; van der Reyden, Tanny; Veenendaal, Dick; Bakker, Nancy; Cookson, Barry; Lynch, Alisson; Witte, Wolfgang; Cuny, Christa; Blanc, Dominique; Vernez, Isabelle; Hryniewicz, Waleria; Fiett, Janusz; Struelens, Marc; Deplano, Ariane; Landegent, Jim; Verbrugh, Henri A.; van Belkum, Alex

    2002-01-01

    The reproducibility of the binary typing (BT) protocol developed for epidemiological typing of Staphylococcus aureus was analyzed in a biphasic multicenter study. In a Dutch multicenter pilot study, 10 genetically unique isolates of methicillin-resistant S. aureus (MRSA) were characterized by the BT

  5. Reproducibility of Tactile Assessments for Children with Unilateral Cerebral Palsy

    Science.gov (United States)

    Auld, Megan Louise; Ware, Robert S.; Boyd, Roslyn Nancy; Moseley, G. Lorimer; Johnston, Leanne Marie

    2012-01-01

    A systematic review identified tactile assessments used in children with cerebral palsy (CP), but their reproducibility is unknown. Sixteen children with unilateral CP and 31 typically developing children (TDC) were assessed 2-4 weeks apart. Test-retest percent agreements within one point for children with unilateral CP (and TDC) were…

  6. Modeling and evaluating repeatability and reproducibility of ordinal classifications

    NARCIS (Netherlands)

    de Mast, J.; van Wieringen, W.N.

    2010-01-01

    This paper argues that currently available methods for the assessment of the repeatability and reproducibility of ordinal classifications are not satisfactory. The paper aims to study whether we can modify a class of models from Item Response Theory, well established for the study of the reliability

  7. ReproPhylo: An Environment for Reproducible Phylogenomics.

    Directory of Open Access Journals (Sweden)

    Amir Szitenberg

    2015-09-01

    Full Text Available The reproducibility of experiments is key to the scientific process, and particularly necessary for accurate reporting of analyses in data-rich fields such as phylogenomics. We present ReproPhylo, a phylogenomic analysis environment developed to ensure experimental reproducibility, to facilitate the handling of large-scale data, and to assist methodological experimentation. Reproducibility, and instantaneous repeatability, is built in to the ReproPhylo system and does not require user intervention or configuration because it stores the experimental workflow as a single, serialized Python object containing explicit provenance and environment information. This 'single file' approach ensures the persistence of provenance across iterations of the analysis, with changes automatically managed by the version control program Git. This file, along with a Git repository, are the primary reproducibility outputs of the program. In addition, ReproPhylo produces an extensive human-readable report and generates a comprehensive experimental archive file, both of which are suitable for submission with publications. The system facilitates thorough experimental exploration of both parameters and data. ReproPhylo is a platform independent CC0 Python module and is easily installed as a Docker image or a WinPython self-sufficient package, with a Jupyter Notebook GUI, or as a slimmer version in a Galaxy distribution.

  8. Reproducibility of abdominal fat assessment by ultrasound and computed tomography.

    Science.gov (United States)

    Mauad, Fernando Marum; Chagas-Neto, Francisco Abaeté; Benedeti, Augusto César Garcia Saab; Nogueira-Barbosa, Marcello Henrique; Muglia, Valdair Francisco; Carneiro, Antonio Adilton Oliveira; Muller, Enrico Mattana; Elias Junior, Jorge

    2017-01-01

    To test the accuracy and reproducibility of ultrasound and computed tomography (CT) for the quantification of abdominal fat in correlation with the anthropometric, clinical, and biochemical assessments. Using ultrasound and CT, we determined the thickness of subcutaneous and intra-abdominal fat in 101 subjects-of whom 39 (38.6%) were men and 62 (61.4%) were women-with a mean age of 66.3 years (60-80 years). The ultrasound data were correlated with the anthropometric, clinical, and biochemical parameters, as well as with the areas measured by abdominal CT. Intra-abdominal thickness was the variable for which the correlation with the areas of abdominal fat was strongest (i.e., the correlation coefficient was highest). We also tested the reproducibility of ultrasound and CT for the assessment of abdominal fat and found that CT measurements of abdominal fat showed greater reproducibility, having higher intraobserver and interobserver reliability than had the ultrasound measurements. There was a significant correlation between ultrasound and CT, with a correlation coefficient of 0.71. In the assessment of abdominal fat, the intraobserver and interobserver reliability were greater for CT than for ultrasound, although both methods showed high accuracy and good reproducibility.

  9. An empirical analysis of journal policy effectiveness for computational reproducibility.

    Science.gov (United States)

    Stodden, Victoria; Seiler, Jennifer; Ma, Zhaokun

    2018-03-13

    A key component of scientific communication is sufficient information for other researchers in the field to reproduce published findings. For computational and data-enabled research, this has often been interpreted to mean making available the raw data from which results were generated, the computer code that generated the findings, and any additional information needed such as workflows and input parameters. Many journals are revising author guidelines to include data and code availability. This work evaluates the effectiveness of journal policy that requires the data and code necessary for reproducibility be made available postpublication by the authors upon request. We assess the effectiveness of such a policy by ( i ) requesting data and code from authors and ( ii ) attempting replication of the published findings. We chose a random sample of 204 scientific papers published in the journal Science after the implementation of their policy in February 2011. We found that we were able to obtain artifacts from 44% of our sample and were able to reproduce the findings for 26%. We find this policy-author remission of data and code postpublication upon request-an improvement over no policy, but currently insufficient for reproducibility.

  10. Reproducibility of contrast-enhanced transrectal ultrasound of the prostate

    NARCIS (Netherlands)

    Sedelaar, J. P.; Goossen, T. E.; Wijkstra, H.; de la Rosette, J. J.

    2001-01-01

    Transrectal three-dimensional (3-D) contrast-enhanced power Doppler ultrasound (US) is a novel technique for studying possible prostate malignancy. Before studies can be performed to investigate the clinical validity of the technique, reproducibility of the contrast US studies must be proven.

  11. Reproducibility in the assessment of acute pancreatitis with computed tomography

    International Nuclear Information System (INIS)

    Freire Filho, Edison de Oliveira; Vieira, Renata La Rocca; Yamada, Andre Fukunishi; Shigueoka, David Carlos; Bekhor, Daniel; Freire, Maxime Figueiredo de Oliveira; Ajzen, Sergio; D'Ippolito, Giuseppe

    2007-01-01

    Objective: To evaluate the reproducibility of unenhanced and contrast-enhanced computed tomography in the assessment of patients with acute pancreatitis. Materials and methods: Fifty-one unenhanced and contrast-enhanced abdominal computed tomography studies of patients with acute pancreatitis were blindly reviewed by two radiologists (observers 1 and 2). The morphological index was separately calculated for unenhanced and contrast-enhanced computed tomography and the disease severity index was established. Intraobserver and interobserver reproducibility of computed tomography was measured by means of the kappa index (κ). Results: Interobserver agreement was κ 0.666, 0.705, 0.648, 0.547 and 0.631, respectively for unenhanced and contrast-enhanced morphological index, presence of pancreatic necrosis, pancreatic necrosis extension, and disease severity index. Intraobserver agreement (observers 1 and 2, respectively) was κ = 0.796 and 0.732 for unenhanced morphological index; κ 0.725 and 0.802 for contrast- enhanced morphological index; κ = 0.674 and 0.849 for presence of pancreatic necrosis; κ = 0.606 and 0.770 for pancreatic necrosis extension; and κ = 0.801 and 0.687 for disease severity index at computed tomography. Conclusion: Computed tomography for determination of morphological index and disease severity index in the staging of acute pancreatitis is a quite reproducible method. The absence of contrast- enhancement does not affect the computed tomography morphological index reproducibility. (author)

  12. Reproducible positioning in chest X-ray radiography

    International Nuclear Information System (INIS)

    1974-01-01

    A device is described that can be used to ensure reproducibility in the positioning of the patient during X-ray radiography of the thorax. Signals are taken from an electrocardiographic monitor and from a device recording the respiratory cycle. Radiography is performed only when two preselected signals coincide

  13. Reproducibility of Manual Platelet Estimation Following Automated Low Platelet Counts

    Directory of Open Access Journals (Sweden)

    Zainab S Al-Hosni

    2016-11-01

    Full Text Available Objectives: Manual platelet estimation is one of the methods used when automated platelet estimates are very low. However, the reproducibility of manual platelet estimation has not been adequately studied. We sought to assess the reproducibility of manual platelet estimation following automated low platelet counts and to evaluate the impact of the level of experience of the person counting on the reproducibility of manual platelet estimates. Methods: In this cross-sectional study, peripheral blood films of patients with platelet counts less than 100 × 109/L were retrieved and given to four raters to perform manual platelet estimation independently using a predefined method (average of platelet counts in 10 fields using 100× objective multiplied by 20. Data were analyzed using intraclass correlation coefficient (ICC as a method of reproducibility assessment. Results: The ICC across the four raters was 0.840, indicating excellent agreement. The median difference of the two most experienced raters was 0 (range: -64 to 78. The level of platelet estimate by the least-experienced rater predicted the disagreement (p = 0.037. When assessing the difference between pairs of raters, there was no significant difference in the ICC (p = 0.420. Conclusions: The agreement between different raters using manual platelet estimation was excellent. Further confirmation is necessary, with a prospective study using a gold standard method of platelet counts.

  14. Reproducibility of Quantitative Structural and Physiological MRI Measurements

    Science.gov (United States)

    2017-08-09

    project.org/) and SPSS (IBM Corp., Armonk, NY) for data analysis. Mean and confidence inter- vals for each measure are found in Tables 1–7. To assess...visits, and was calculated using a two- way mixed model in SPSS MCV and MRD values closer to 0 are considered to be the most reproducible, and ICC

  15. Reproducibility of abdominal fat assessment by ultrasound and computed tomography

    Energy Technology Data Exchange (ETDEWEB)

    Mauad, Fernando Marum; Chagas-Neto, Francisco Abaete; Benedeti, Augusto Cesar Garcia Saab; Nogueira-Barbosa, Marcello Henrique; Muglia, Valdair Francisco; Carneiro, Antonio Adilton Oliveira; Muller, Enrico Mattana; Elias Junior, Jorge, E-mail: fernando@fatesa.edu.br [Faculdade de Tecnologia em Saude (FATESA), Ribeirao Preto, SP (Brazil); Universidade de Fortaleza (UNIFOR), Fortaleza, CE (Brazil). Departmento de Radiologia; Universidade de Sao Paulo (FMRP/USP), Ribeirao Preto, SP (Brazil). Faculdade de Medicina. Departmento de Medicina Clinica; Universidade de Sao Paulo (FFCLRP/USP), Ribeirao Preto, SP (Brazil). Faculdade de Filosofia, Ciencias e Letras; Hospital Mae de Deus, Porto Alegre, RS (Brazil)

    2017-05-15

    Objective: To test the accuracy and reproducibility of ultrasound and computed tomography (CT) for the quantification of abdominal fat in correlation with the anthropometric, clinical, and biochemical assessments. Materials and Methods: Using ultrasound and CT, we determined the thickness of subcutaneous and intra-abdominal fat in 101 subjects-of whom 39 (38.6%) were men and 62 (61.4%) were women-with a mean age of 66.3 years (60-80 years). The ultrasound data were correlated with the anthropometric, clinical, and biochemical parameters, as well as with the areas measured by abdominal CT. Results: Intra-abdominal thickness was the variable for which the correlation with the areas of abdominal fat was strongest (i.e., the correlation coefficient was highest). We also tested the reproducibility of ultrasound and CT for the assessment of abdominal fat and found that CT measurements of abdominal fat showed greater reproducibility, having higher intraobserver and interobserver reliability than had the ultrasound measurements. There was a significant correlation between ultrasound and CT, with a correlation coefficient of 0.71. Conclusion: In the assessment of abdominal fat, the intraobserver and interobserver reliability were greater for CT than for ultrasound, although both methods showed high accuracy and good reproducibility. (author)

  16. High Reproducibility of ELISPOT Counts from Nine Different Laboratories

    DEFF Research Database (Denmark)

    Sundararaman, Srividya; Karulin, Alexey Y; Ansari, Tameem

    2015-01-01

    The primary goal of immune monitoring with ELISPOT is to measure the number of T cells, specific for any antigen, accurately and reproducibly between different laboratories. In ELISPOT assays, antigen-specific T cells secrete cytokines, forming spots of different sizes on a membrane with variable...

  17. Reproducibility of the Pleth Variability Index in premature infants

    NARCIS (Netherlands)

    Den Boogert, W.J. (Wilhelmina J.); H.A. van Elteren (Hugo); T.G. Goos (Tom); I.K.M. Reiss (Irwin); R.C.J. de Jonge (Rogier); V.J. van den Berg (Victor J.)

    2017-01-01

    textabstractThe aim was to assess the reproducibility of the Pleth Variability Index (PVI), developed for non-invasive monitoring of peripheral perfusion, in preterm neonates below 32 weeks of gestational age. Three PVI measurements were consecutively performed in stable, comfortable preterm

  18. Reproducibility of the Pleth Variability Index in premature infants

    NARCIS (Netherlands)

    Den Boogert, Wilhelmina J.; Van Elteren, Hugo A.; Goos, T.G.; Reiss, Irwin K.M.; De Jonge, Rogier C.J.; van Den Berg, Victor J.

    2017-01-01

    The aim was to assess the reproducibility of the Pleth Variability Index (PVI), developed for non-invasive monitoring of peripheral perfusion, in preterm neonates below 32 weeks of gestational age. Three PVI measurements were consecutively performed in stable, comfortable preterm neonates in the

  19. Annotating with Propp's Morphology of the Folktale: Reproducibility and Trainability

    NARCIS (Netherlands)

    Fisseni, B.; Kurji, A.; Löwe, B.

    2014-01-01

    We continue the study of the reproducibility of Propp’s annotations from Bod et al. (2012). We present four experiments in which test subjects were taught Propp’s annotation system; we conclude that Propp’s system needs a significant amount of training, but that with sufficient time investment, it

  20. Exploring the Coming Repositories of Reproducible Experiments: Challenges and Opportunities

    DEFF Research Database (Denmark)

    Freire, Juliana; Bonnet, Philippe; Shasha, Dennis

    2011-01-01

    Computational reproducibility efforts in many communities will soon give rise to validated software and data repositories of high quality. A scientist in a field may want to query the components of such repositories to build new software workflows, perhaps after adding the scientist’s own algorithms...