WorldWideScience

Sample records for uptake dietary assimilation

  1. Nitrogen uptake and assimilation by corn roots

    International Nuclear Information System (INIS)

    Yoneyama, Tadakatsu; Akiyama, Yoko; Kumazawa, Kikuo

    1977-01-01

    The site of nitrogen uptake in the apical root zone of corn was experimentally investigated. Two experiments were performed. The one is to see the assimilation of nitrate and ammonium and the effects of low temperature on it. The 4-day-old roots were treated with 15 N-labelled inorganic nitrogen of 20 ppm N in 5 x 10 -4 M CaSO 4 solution at 30 deg. C and 0 deg. C. The other is to see the nitrogen uptake at apical root zone and the utilization of newly absorbed nitrogen at the root top. The 4-day-old roots were transferred into 5 x 10 -4 M CaSO 4 solution containing 15 N-labelled ammonium nitrate of 40 ppm N. As a result, the effect of low temperature on the nitrogen uptake appeared to be more drastic in the case of nitrate than ammonium. The 15 N content of amino acids indicates that ammonium is assimilated into amino acids even at 0 deg. C, but nitrate is not. The ammonium nitrogen seemed to be absorbed at both cell dividing and elongating zones. On the other hand, nitrate nitrogen seemed to be strongly absorbed at cell elongating zone. The nitrogen in the apical part may be supplied not only by direct absorption but also by translocation from the basal part. The clear difference was found in the utilization of nitrate and ammonium nitrogen at the root top when the root was elongating. This may be due to the difference of assimilation products of inorganic nitrogen. Newly absorbed ammonium nitrogen is more utilizable for the growth of root top than nitrate nitrogen. (Iwakiri, K.)

  2. Dioxin and phthalate uptake and assimilation by the green mussel Perna viridis

    International Nuclear Information System (INIS)

    Wang, Wen-Xiong; Zhang, Qiong

    2013-01-01

    In this study, the aqueous uptake and dietary assimilation (trophic transfer) of two endocrine disrupting compounds (dioxin and phathalic acid) in the green mussel Perna viridis were quantified. During short-term exposure period, dioxin rapidly sorbed onto phytoplankton and its accumulation was much higher than that of phthalate. The uptake of these two compounds by the mussels increased with increasing temperature and salinity (for dioxin only). The dietary assimilation of the two contaminants was rather modest (10–64% for dioxin and 20–47% for phthalate), and was greatly dependent on the food species and concentration. Interestingly, dietary assimilation increased with increasing diatom food concentration. Gut passage time was partially responsible for the variable dietary assimilation. Given the high dissolved uptake rate and the modest dietary assimilation, aqueous exposure was predicted to be the dominant bioaccumulation source for both dioxin and phthalate in the green mussels under most conditions. -- Capsule: Aqueous uptake was the predominant pathway for dioxin and phthalate accumulation in marine green mussels

  3. Selenium uptake, translocation, assimilation and metabolic fate in plants.

    Science.gov (United States)

    Sors, T G; Ellis, D R; Salt, D E

    2005-12-01

    The chemical and physical resemblance between selenium (Se) and sulfur (S) establishes that both these elements share common metabolic pathways in plants. The presence of isologous Se and S compounds indicates that these elements compete in biochemical processes that affect uptake, translocation and assimilation throughout plant development. Yet, minor but crucial differences in reactivity and other metabolic interactions infer that some biochemical processes involving Se may be excluded from those relating to S. This review examines the current understanding of physiological and biochemical relationships between S and Se metabolism by highlighting their similarities and differences in relation to uptake, transport and assimilation pathways as observed in Se hyperaccumulator and non-accumulator plant species. The exploitation of genetic resources used in bioengineering strategies of plants is illuminating the function of sulfate transporters and key enzymes of the S assimilatory pathway in relation to Se accumulation and final metabolic fate. These strategies are providing the basic framework by which to resolve questions relating to the essentiality of Se in plants and the mechanisms utilized by Se hyperaccumulators to circumvent toxicity. In addition, such approaches may assist in the future application of genetically engineered Se accumulating plants for environmental renewal and human health objectives.

  4. Uptake of mercury vapor by wheat. An assimilation model

    International Nuclear Information System (INIS)

    Browne, C.L.; Fang, S.C.

    1978-01-01

    Using a whole-plant chamber and 203 Hg-labeled mercury, a quantitative study was made of the effect of environmental parameters on the uptake, by wheat (Triticum aestivum), of metallic mercury vapor, an atmospheric pollutant. Factors were examined in relation to their influence on components of the gas-assimilation model, U(Hg) = (C/sub A' -- C/sub L')/(r/sub L.Hg/ + r/sub M.Hg/) where U(Hg) is the rate of mercury uptake per unit leaf surface, C/sub A'/ is the ambient mercury vapor concentration, C/sub L'/ is the mercury concentration at immobilization sites within the plant (assumed to be zero), r/sub L.Hg/ is the total leaf resistance to mercury vapor exchange, and r/sub M.Hg/ is a residual term to account for unexplained physical and biochemical resistances to mercury vapor uptake. Essentially all mercury vapor uptake was confined to the leaves. r/sub L.Hg/ was particularly influenced by illumination (0 to 12.8 klux), but unaffected by ambient temperature (17 to 33 0 C) and mercury vapor concentration (0 to 40 μg m -3 ). The principal limitation to mercury vapor uptake was r/sub M.Hg/, which was linearly related to leaf temperature, but unaffected by mercury vapor concentration and illumination, except for apparent high values in darkness. Knowing C/sub A'/ and estimating r/sub L.Hg/ and r/sub M.Hg/ from experimental data, mercury vapor uptake by wheat in light was accurately predicted for several durations of exposure using the above model

  5. Nocturnal uptake and assimilation of nitrogen dioxide by C3 and CAM plants.

    Science.gov (United States)

    Takahashi, Misa; Konaka, Daisuke; Sakamoto, Atsushi; Morikawa, Hiromichi

    2005-01-01

    In order to investigate nocturnal uptake and assimilation of NO2 by C3 and crassulacean acid metabolism (CAM) plants, they were fumigated with 4 microl l(-1) 15N-labeled nitrogen dioxide (NO2) for 8 h. The amount of NO2 and assimilation of NO2 by plants were determined by mass spectrometry and Kjeldahl-nitrogen based mass spectrometry, respectively. C3 plants such as kenaf (Hibiscus cannabinus), tobacco (Nicotiana tabacum) and ground cherry (Physalis alkekengi) showed a high uptake and assimilation during daytime as high as 1100 to 2700 ng N mg(-1) dry weight. While tobacco and ground cherry strongly reduced uptake and assimilation of NO2 during nighttime, kenaf kept high nocturnal uptake and assimilation of NO2 as high as about 1500 ng N mg(-1) dry weight. Stomatal conductance measurements indicated that there were no significant differences to account for the differences in the uptake of NO2 by tobacco and kenaf during nighttime. CAM plants such as Sedum sp., Kalanchoe blossfeldiana (kalanchoe) and Aloe arborescens exhibited nocturnal uptake and assimilation of NO2. However, the values of uptake and assimilation of NO2 both during daytime and nighttime was very low (at most about 500 ng N mg(-1) dry weight) as compared with those of above mentioned C3 plants. The present findings indicate that kenaf is an efficient phytoremediator of NO2 both during daytime and nighttime.

  6. Does water chemistry affect the dietary uptake and toxicity of silver nanoparticles by the freshwater snail Lymnaea stagnalis?

    International Nuclear Information System (INIS)

    Oliver, Ana López-Serrano; Croteau, Marie-Noële; Stoiber, Tasha L.; Tejamaya, Mila; Römer, Isabella; Lead, Jamie R.; Luoma, Samuel N.

    2014-01-01

    Silver nanoparticles (AgNPs) are widely used in many applications and likely released into the aquatic environment. There is increasing evidence that Ag is efficiently delivered to aquatic organisms from AgNPs after aqueous and dietary exposures. Accumulation of AgNPs through the diet can damage digestion and adversely affect growth. It is well recognized that aspects of water quality, such as hardness, affect the bioavailability and toxicity of waterborne Ag. However, the influence of water chemistry on the bioavailability and toxicity of dietborne AgNPs to aquatic invertebrates is largely unknown. Here we characterize for the first time the effects of water hardness and humic acids on the bioaccumulation and toxicity of AgNPs coated with polyvinyl pyrrolidone (PVP) to the freshwater snail Lymnaea stagnalis after dietary exposures. Our results indicate that bioaccumulation and toxicity of Ag from PVP-AgNPs ingested with food are not affected by water hardness and by humic acids, although both could affect interactions with the biological membrane and trigger nanoparticle transformations. Snails efficiently assimilated Ag from the PVP-AgNPs mixed with diatoms (Ag assimilation efficiencies ranged from 82 to 93%). Rate constants of Ag uptake from food were similar across the entire range of water hardness and humic acid concentrations. These results suggest that correcting regulations for water quality could be irrelevant and ineffective where dietary exposure is important. - Highlights: • AgNP coated with polyvinyl pyrrolidone (PVP), PVP-AgNP were efficiently assimilated by Lymnaea stagnalis. • Water chemistry has no influence on the dietary uptake of PVP-AgNP by snails. - L. Stagnalis assimilated PVP-AgNPs efficiently from food and water chemistry had no influence on their uptake and toxicity

  7. Improving representation of nitrogen uptake, allocation, and carbon assimilation in the Community Land Model

    Science.gov (United States)

    Ghimire, B.; Riley, W. J.; Koven, C.

    2013-12-01

    Nitrogen is the most important nutrient limiting plant carbon assimilation and growth, and is required for production of photosynthetic enzymes, growth and maintenance respiration, and maintaining cell structure. The forecasted rise in plant available nitrogen through atmospheric nitrogen deposition and the release of locked soil nitrogen by permafrost thaw in high latitude ecosystems is likely to result in an increase in plant productivity. However a mechanistic representation of plant nitrogen dynamics is lacking in earth system models. Most earth system models ignore the dynamic nature of plant nutrient uptake and allocation, and further lack tight coupling of below- and above-ground processes. In these models, the increase in nitrogen uptake does not translate to a corresponding increase in photosynthesis parameters, such as maximum Rubisco capacity and electron transfer rate. We present an improved modeling framework implemented in the Community Land Model version 4.5 (CLM4.5) for dynamic plant nutrient uptake, and allocation to different plant parts, including leaf enzymes. This modeling framework relies on imposing a more realistic flexible carbon to nitrogen stoichiometric ratio for different plant parts. The model mechanistically responds to plant nitrogen uptake and leaf allocation though changes in photosynthesis parameters. We produce global simulations, and examine the impacts of the improved nitrogen cycling. The improved model is evaluated against multiple observations including TRY database of global plant traits, nitrogen fertilization observations and 15N tracer studies. Global simulations with this new version of CLM4.5 showed better agreement with the observations than the default CLM4.5-CN model, and captured the underlying mechanisms associated with plant nitrogen cycle.

  8. Does water chemistry affect the dietary uptake and toxicity of silver nanoparticles by the freshwater snail Lymnaea stagnalis?

    Science.gov (United States)

    López-Serrano Oliver, Ana; Croteau, Marie-Noële; Stoiber, Tasha L.; Tejamaya, Mila; Römer, Isabella; Lead, Jamie R.; Luoma, Samuel N.

    2014-01-01

    Silver nanoparticles (AgNPs) are widely used in many applications and likely released into the aquatic environment. There is increasing evidence that Ag is efficiently delivered to aquatic organisms from AgNPs after aqueous and dietary exposures. Accumulation of AgNPs through the diet can damage digestion and adversely affect growth. It is well recognized that aspects of water quality, such as hardness, affect the bioavailability and toxicity of waterborne Ag. However, the influence of water chemistry on the bioavailability and toxicity of dietborne AgNPs to aquatic invertebrates is largely unknown. Here we characterize for the first time the effects of water hardness and humic acids on the bioaccumulation and toxicity of AgNPs coated with polyvinyl pyrrolidone (PVP) to the freshwater snail Lymnaea stagnalis after dietary exposures. Our results indicate that bioaccumulation and toxicity of Ag from PVP-AgNPs ingested with food are not affected by water hardness and by humic acids, although both could affect interactions with the biological membrane and trigger nanoparticle transformations. Snails efficiently assimilated Ag from the PVP-AgNPs mixed with diatoms (Ag assimilation efficiencies ranged from 82 to 93%). Rate constants of Ag uptake from food were similar across the entire range of water hardness and humic acid concentrations. These results suggest that correcting regulations for water quality could be irrelevant and ineffective where dietary exposure is important.

  9. Dietary phosphorus burden increases cariogenesis independent of vitamin D uptake.

    Science.gov (United States)

    Goodson, J Max; Shi, Ping; Mumena, Chrispinus H; Haq, Afrozul; Razzaque, Mohammed S

    2017-03-01

    An association between excessive sugar consumption and dental decay, particularly in children, has been well-established. In this study we have analyzed whether consumption of phosphorus, an important ingredient of sugary drinks, has any association with the evolvement of dental decay. Food consumption, gingival redness and dental decay were evaluated in a total of 8,317 children with the mean age of 9.99+0.68 years with a strong gender bias (pdiet, low in sugar but high in phosphorus (6.58%, n=661), compared to those who consumed a low sugar and low phosphorus containing diet (5.02%, n=413). Finally, we did not find any significant association between vitamin D uptake and the genesis of dental decay. From these results, we concluded that both high sugar and high phosphate consumption can influence evolvement of dental decay, and that, a healthier diet could be achieved by reducing consumption of dental cariogenic dietary factors, sugar and phosphate. Copyright © 2016 Elsevier Ltd. All rights reserved.

  10. Assimilation of water and dietary ions by the gastrointestinal tract during digestion in seawater-acclimated rainbow trout

    OpenAIRE

    Bucking, Carol; Fitzpatrick, John L.; Nadella, Sunita R.; McGaw, Iain J.; Wood, Chris M.

    2011-01-01

    Recent studies focusing on the consequences of feeding for ion and water balance in freshwater fish have revealed the need for similar comparative studies in seawater fish. A detailed time course sampling of gastrointestinal (GI) tract contents following the ingestion of a single meal of a commercial diet revealed the assimilation of both water and dietary ions (Na+, Cl-, K+, Ca2+, Mg2+) along the GI tract of seawater-acclimated rainbow trout (Oncorhynchus mykiss) which had been fasted for 1 ...

  11. A protective effect of dietary calcium against acute waterborne cadmium uptake in rainbow trout

    International Nuclear Information System (INIS)

    Baldisserotto, B.; Kamunde, C.; Matsuo, A.; Wood, C.M.

    2004-01-01

    The present study examined the interactions between elevated dietary calcium (as ionic Ca 2+ in the form of CaCl 2 ·2H 2 O) and acute waterborne Cd exposure (50 μg/l as CdNO 3 for 3 h) on whole body uptake and internal distribution of newly accumulated Cd, Ca 2+ , and Na + in juvenile rainbow trout (Oncorhynchus mykiss). Fish were fed with three diets 20 (control), 30 and 60 mg Ca 2+ /g food: for 7 days before fluxes were measured with radiotracers over a 3 h period. The two elevated Ca 2+ diets reduced the whole body uptake of both Ca 2+ and Cd by >50% and similarly reduced the internalization of both newly accumulated metals in most tissues, effects which reflect the shared branchial uptake route for Ca 2+ and Cd. As the Ca 2+ concentrations of the fluid phases of the stomach and intestinal contents were greatly elevated by the experimental diets, increased gastrointestinal Ca 2+ uptake likely caused the down-regulation of the branchial Ca 2+ (and Cd) uptake pathway. Waterborne Na + uptake and internal distribution were not affected. While plasma Ca 2+ surged after the first two feedings of the 60 mg Ca 2+ /g diet, internal homeostasis was quickly restored. Total Ca 2+ , Na + , and Cl - levels in tissues were not affected by diets. While dietary Ca 2+ protected against waterborne Cd uptake, it did not protect against the relative inhibition of waterborne Ca 2+ uptake caused by waterborne Cd. Acute exposure to 50 μg/l Cd reduced the uptake and internalization of newly accumulated Ca 2+ (but not Na + ) by 70% or more, regardless of diet. Since elevated dietary Ca 2+ reduces waterborne Cd uptake, fish eating a Ca 2+ -rich invertebrate diet may be more protected against waterborne Cd toxicity in a field situation

  12. Assimilation of water and dietary ions by the gastrointestinal tract during digestion in seawater-acclimated rainbow trout.

    Science.gov (United States)

    Bucking, Carol; Fitzpatrick, John L; Nadella, Sunita R; McGaw, Iain J; Wood, Chris M

    2011-07-01

    Recent studies focusing on the consequences of feeding for ion and water balance in freshwater fish have revealed the need for similar comparative studies in seawater fish. A detailed time course sampling of gastrointestinal (GI) tract contents following the ingestion of a single meal of a commercial diet revealed the assimilation of both water and dietary ions (Na(+), Cl(-), K(+), Ca(2+), Mg(2+)) along the GI tract of seawater-acclimated rainbow trout (Oncorhynchus mykiss) which had been fasted for 1 week. Consumption of the meal did not change the drinking rate. There was a large secretion of fluid into the anterior intestine and caecae (presumably bile and/or pancreatic secretions). As a result, net assimilation (63%) of the ingested water along the GI tract was lower than generally reported for fasted trout. Mg(2+) was neither secreted into nor absorbed from the GI tract on a net basis. Only K(+) (93% assimilated) and Ca(2+) (43% assimilated) were absorbed in amounts in excess of those provided by ingested seawater, suggesting that dietary sources of K(+) and Ca(2+) may be important to seawater teleosts. The oesophagus-stomach served as a major site of absorption for Na(+), Cl(-), K(+), Ca(2+), and Mg(2+), and the anterior intestine and caecae as a major site of net secretion for all of these ions, except Cl(-). Despite large absorptive fluxes of these ions, the ionic composition of the plasma was maintained during the digestion of the meal. The results of the present study were compared with previous work on freshwater-acclimated rainbow trout, highlighting some important differences, but also several similarities on the assimilation of water and ions along the gastrointestinal tract during digestion. This study highlights the complicated array of ion and water transport that occurs in the intestine during digestion while revealing the importance of dietary K(+) and Ca(2+) to seawater-acclimated rainbow trout. Additionally, this study reveals that digestion

  13. Influence of Se concentrations and species in hydroponic cultures on Se uptake, translocation and assimilation in non-accumulator ryegrass.

    Science.gov (United States)

    Versini, Antoine; Di Tullo, Pamela; Aubry, Emmanuel; Bueno, Maïté; Thiry, Yves; Pannier, Florence; Castrec-Rouelle, Maryse

    2016-11-01

    The success of biofortification and phytoremediation practices, addressing Se deficiency and Se pollution issues, hinges crucially on the fate of selenium in the plant media in response to uptake, translocation and assimilation processes. We investigate the fate of selenium in root and shoot compartments after 3 and 6 weeks of experiment using a total of 128 plants grown in hydroponic solution supplied with 0.2, 2, 5, 20 and 100 mg L -1 of selenium in the form of selenite, selenate and a mixture of both species. Selenate-treated plants exhibited higher root-to-shoot Se translocation and total Se uptake than selenite-treated plants. Plants took advantage of the selenate mobility and presumably of the storage capacity of leaf vacuoles to circumvent selenium toxicity within the plant. Surprisingly, 28% of selenate was found in shoots of selenite-treated plants, questioning the ability of plants to oxidize selenite into selenate. Selenomethionine and methylated organo-selenium amounted to 30% and 8% respectively in shoots and 35% and 9% in roots of the identified Se, suggesting that selenium metabolization occurred concomitantly in root and shoot plant compartments and demonstrating that non-accumulator plants can synthesize notable quantities of precursor compound for volatilization. The present study demonstrated that non-accumulator plants can develop the same strategies as hyper-accumulator plants to limit selenium toxicity. When both selenate and selenite were supplied together, plants used selenate in a storage pathway and selenite in an assimilation pathway. Plants might thereby benefit from mixed supplies of selenite and selenate by saving enzymes and energy required for selenate reduction. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  14. Comparison of the uptake and assimilation of ammonium and nitrate in Indica and Japonica rice plants using the tracer 15N method

    International Nuclear Information System (INIS)

    Ta, T.C.; Ohira, Koji

    1982-01-01

    The uptake of 15 N-labeled ammonium and nitrate and their assimilation in 4-week-old Indica and Japonica rice plants were studied during 24 hr exposure to 2 mM solutions of ( 15 NH 4 ) 2 SO 4 and/or Na 15 NO 3 . Although there was no clear difference in the uptake and assimilation of 15 NH 4+ , significant differences in the uptake and assimilation of 15 NO 3- by both varieties were observed. When NH 4+ or NO 3- was supplied exclusively, the Indica rice plants absorbed the latter more effectively than the Japonica. In addition, despite a preference for uptake of NH 4+ rather than NO 3- as shown by both varieties when both forms were supplied together, the relative amounts of NO 3- uptake by the Indica were higher than those of Japonica. On the other hand, the Indica rice plants reduced the absorbed 15 NO 3- more rapidly than the Japonica. The incorporation 15 NO 3- into the ethanol insoluble nitrogen fraction of the Indica rice also exceeded that of the Japonica. These results suggest that the Indica has the ability to utilize NO 3- as a nitrogen source more effectively than the Japonica rice plants. (author)

  15. Effects of temperature and light intensity on the uptake and assimilation of 15N-labeled ammonium and nitrate in Indica and Japonica rice plants

    International Nuclear Information System (INIS)

    Ta, T.C.; Ohira, Koji

    1982-01-01

    The effects of various environmental condition such as temperature and light intensity on the uptake and assimilation of ammonium and nitrate in 4-week-old Indica and Japonica rice plants were studied using the 15 N tracer technique. Both temperature and light intensity profoundly affected the uptake and assimilation of ammonium and nitrate, and the effects were more apparent in the utilization of nitrate by both Indica and Japonica rice plants. The uptake as well as assimilation of the two forms of nitrogen were greatly inhibited at low temperature and low light intensity. On the other hand, although no significant difference in the effects of environmental conditions on the utilization of ammonium was observed between the Indica and Japonica rice plants, the former were more sensitive than the latter in the utilization of nitrate. At high temperature and high light intensity, the Indica rice plants absorbed, reduced, and assimilated nitrate more effectively than the Japonica, and this effect disappeared when the temperature or light intensity was reduced. (author)

  16. A protective effect of dietary calcium against acute waterborne cadmium uptake in rainbow trout

    Energy Technology Data Exchange (ETDEWEB)

    Baldisserotto, B.; Kamunde, C.; Matsuo, A.; Wood, C.M

    2004-03-30

    The present study examined the interactions between elevated dietary calcium (as ionic Ca{sup 2+} in the form of CaCl{sub 2}{center_dot}2H{sub 2}O) and acute waterborne Cd exposure (50 {mu}g/l as CdNO{sub 3} for 3 h) on whole body uptake and internal distribution of newly accumulated Cd, Ca{sup 2+}, and Na{sup +} in juvenile rainbow trout (Oncorhynchus mykiss). Fish were fed with three diets 20 (control), 30 and 60 mg Ca{sup 2+}/g food: for 7 days before fluxes were measured with radiotracers over a 3 h period. The two elevated Ca{sup 2+} diets reduced the whole body uptake of both Ca{sup 2+} and Cd by >50% and similarly reduced the internalization of both newly accumulated metals in most tissues, effects which reflect the shared branchial uptake route for Ca{sup 2+} and Cd. As the Ca{sup 2+} concentrations of the fluid phases of the stomach and intestinal contents were greatly elevated by the experimental diets, increased gastrointestinal Ca{sup 2+} uptake likely caused the down-regulation of the branchial Ca{sup 2+} (and Cd) uptake pathway. Waterborne Na{sup +} uptake and internal distribution were not affected. While plasma Ca{sup 2+} surged after the first two feedings of the 60 mg Ca{sup 2+}/g diet, internal homeostasis was quickly restored. Total Ca{sup 2+}, Na{sup +}, and Cl{sup -} levels in tissues were not affected by diets. While dietary Ca{sup 2+} protected against waterborne Cd uptake, it did not protect against the relative inhibition of waterborne Ca{sup 2+} uptake caused by waterborne Cd. Acute exposure to 50 {mu}g/l Cd reduced the uptake and internalization of newly accumulated Ca{sup 2+} (but not Na{sup +}) by 70% or more, regardless of diet. Since elevated dietary Ca{sup 2+} reduces waterborne Cd uptake, fish eating a Ca{sup 2+}-rich invertebrate diet may be more protected against waterborne Cd toxicity in a field situation.

  17. Dietary calcium levels and chemical treatments influencing radiostrontium uptake and release in mammalian bones

    International Nuclear Information System (INIS)

    Roushdy, H.M.; Moloukhia, M.K.; Abdel-Fattah, A.T.

    1979-01-01

    Data obtained from in vivo studies on rats suggest that the rate of administered radiostrontium uptake and deposition in bones shows a negative correlation with the levels of dietary calcium in the following order: CR, CN, CP, CDP, where CR stands for calcium-rich diet (Ca% 1.728), CN for calcium-normal ( Ca% 1.442), CP for calcium-poor (Ca% 0.347(and CDP for both calcium-poor (Ca% 0.135) and vitamin D deficient. The uptake values for the administered radiostrontium were affected by the duration of the experimental feeding time in the following order: 10, 50 and 120 days. Administration of MgSO 4 or SrCl 2 experimentally fed animals showed a decrease in the magnitude of radiostrontium uptake, the effect being more pronounced with MgSO, whereas CaCl 2 showed an increase in the rate of uptake of the radionuclide. It has been also found that increasing the level of dietary calcium as well as administration of stable strontium or magnesium favoured more rapid elimination of the radiostrontium from the bones and helped the animals to discriminate more significantly against radiostrontium uptake. The data obtained were statistically evaluated and the results discussed in view of the relevant literature. (author)

  18. CUP-1 Is a Novel Protein Involved in Dietary Cholesterol Uptake in Caenorhabditis elegans

    Science.gov (United States)

    Valdes, Victor J.; Athie, Alejandro; Salinas, Laura S.; Navarro, Rosa E.; Vaca, Luis

    2012-01-01

    Sterols transport and distribution are essential processes in all multicellular organisms. Survival of the nematode Caenorhabditis elegans depends on dietary absorption of sterols present in the environment. However the general mechanisms associated to sterol uptake in nematodes are poorly understood. In the present work we provide evidence showing that a previously uncharacterized transmembrane protein, designated Cholesterol Uptake Protein-1 (CUP-1), is involved in dietary cholesterol uptake in C. elegans. Animals lacking CUP-1 showed hypersensitivity to cholesterol limitation and were unable to uptake cholesterol. A CUP-1-GFP fusion protein colocalized with cholesterol-rich vesicles, endosomes and lysosomes as well as the plasma membrane. Additionally, by FRET imaging, a direct interaction was found between the cholesterol analog DHE and the transmembrane “cholesterol recognition/interaction amino acid consensus” (CRAC) motif present in C. elegans CUP-1. In-silico analysis identified two mammalian homologues of CUP-1. Most interestingly, CRAC motifs are conserved in mammalian CUP-1 homologous. Our results suggest a role of CUP-1 in cholesterol uptake in C. elegans and open up the possibility for the existence of a new class of proteins involved in sterol absorption in mammals. PMID:22479487

  19. Carbon: Nitrogen Interaction Regulates Expression of Genes Involved in N-Uptake and Assimilation in Brassica juncea L.

    Directory of Open Access Journals (Sweden)

    Parul Goel

    Full Text Available In plants, several cellular and metabolic pathways interact with each other to regulate processes that are vital for their growth and development. Carbon (C and Nitrogen (N are two main nutrients for plants and coordination of C and N pathways is an important factor for maintaining plant growth and development. In the present work, influence of nitrogen and sucrose (C source on growth parameters and expression of genes involved in nitrogen transport and assimilatory pathways was studied in B. juncea seedlings. For this, B. juncea seedlings were treated with four combinations of C and N source viz., N source alone (-Suc+N, C source alone (+Suc-N, with N and C source (+Suc+N or without N and C source (-Suc-N. Cotyledon size and shoot length were found to be increased in seedlings, when nitrogen alone was present in the medium. Distinct expression pattern of genes in both, root and shoot tissues was observed in response to exogenously supplied N and C. The presence or depletion of nitrogen alone in the medium leads to severe up- or down-regulation of key genes involved in N-uptake and transport (BjNRT1.1, BjNRT1.8 in root tissue and genes involved in nitrate reduction (BjNR1 and BjNR2 in shoot tissue. Moreover, expression of several genes, like BjAMT1.2, BjAMT2 and BjPK in root and two genes BjAMT2 and BjGS1.1 in shoot were found to be regulated only when C source was present in the medium. Majority of genes were found to respond in root and shoot tissues, when both C and N source were present in the medium, thus reflecting their importance as a signal in regulating expression of genes involved in N-uptake and assimilation. The present work provides insight into the regulation of genes of N-uptake and assimilatory pathway in B. juncea by interaction of both carbon and nitrogen.

  20. Carbon: Nitrogen Interaction Regulates Expression of Genes Involved in N-Uptake and Assimilation in Brassica juncea L.

    Science.gov (United States)

    Goel, Parul; Bhuria, Monika; Kaushal, Mamta

    2016-01-01

    In plants, several cellular and metabolic pathways interact with each other to regulate processes that are vital for their growth and development. Carbon (C) and Nitrogen (N) are two main nutrients for plants and coordination of C and N pathways is an important factor for maintaining plant growth and development. In the present work, influence of nitrogen and sucrose (C source) on growth parameters and expression of genes involved in nitrogen transport and assimilatory pathways was studied in B. juncea seedlings. For this, B. juncea seedlings were treated with four combinations of C and N source viz., N source alone (-Suc+N), C source alone (+Suc-N), with N and C source (+Suc+N) or without N and C source (-Suc-N). Cotyledon size and shoot length were found to be increased in seedlings, when nitrogen alone was present in the medium. Distinct expression pattern of genes in both, root and shoot tissues was observed in response to exogenously supplied N and C. The presence or depletion of nitrogen alone in the medium leads to severe up- or down-regulation of key genes involved in N-uptake and transport (BjNRT1.1, BjNRT1.8) in root tissue and genes involved in nitrate reduction (BjNR1 and BjNR2) in shoot tissue. Moreover, expression of several genes, like BjAMT1.2, BjAMT2 and BjPK in root and two genes BjAMT2 and BjGS1.1 in shoot were found to be regulated only when C source was present in the medium. Majority of genes were found to respond in root and shoot tissues, when both C and N source were present in the medium, thus reflecting their importance as a signal in regulating expression of genes involved in N-uptake and assimilation. The present work provides insight into the regulation of genes of N-uptake and assimilatory pathway in B. juncea by interaction of both carbon and nitrogen. PMID:27637072

  1. Characterization of dietary Ni uptake in the rainbow trout, Oncorhynchus mykiss.

    Science.gov (United States)

    Leonard, Erin M; Nadella, Sunita R; Bucking, Carol; Wood, Chris M

    2009-07-26

    We characterized dietary Ni uptake in the gastrointestinal tract of rainbow trout using both in vivo and in vitro techniques. Adult trout were fed a meal (3% of body mass) of uncontaminated commercial trout chow, labeled with an inert marker (ballotini beads). In vivo dietary Ni concentrations in the supernatant (fluid phase) of the gut contents averaged from 2 micromoll(-1) to 24 micromoll(-1), and net overall absorption efficiency of dietary Ni was approximately 50% from the single meal, similar to that for the essential metal Cu, adding to the growing evidence of Ni essentiality. The stomach and mid-intestine emerged as important sites of Ni uptake in vivo, accounting for 78.5% and 18.9% of net absorption respectively, while the anterior intestine was a site of net secretion. Most of the stomach uptake occurred in the first 4h. In vitro gut sac studies using radiolabeled Ni (at 30 micromoll(-1)) demonstrated that unidirectional uptake occurred in all segments, with area-weighted rates being highest in the anterior intestine. Differences between in vivo and in vitro results likely reflect the favourable uptake conditions in the stomach, and biliary secretion of Ni in the anterior intestine in vivo. The concentration-dependent kinetics of unidirectional Ni uptake in vitro were biphasic in nature, with a saturable Michaelis-Menten relationship observed at 1-30 micromoll(-1) Ni (K(m) - 11 micromoll(-1), J(max) - 53 pmolcm(-2)h(-1) in the stomach and K(m) - 42 micromoll(-1), J(max) - 215 pmolcm(-2)h(-1) in the mid-intestine), suggesting mediation by a channel or carrier process. A linear uptake relationship was seen at higher concentrations, indicative of simple diffusion. Ni uptake (at 30 micromoll(-1)) into the blood compartment was significantly reduced in the stomach by high Mg (50 mmoll(-1)), and in the mid-intestine by both Mg (50 mmoll(-1)) and Ca (50 mmoll(-1)). In both regions, kinetic analysis demonstrated reductions in J(max) with unchanged K

  2. Sustained swimming improves fish dietary nutrient assimilation efficiency and body composition of juvenile Brycon amazonicus

    Directory of Open Access Journals (Sweden)

    Gustavo Alberto Arbeláez-Rojas

    Full Text Available ABSTRACT Sustained swimming (SS usually promotes beneficial effects in growth and feed conversion of fishes. Although feed efficiency is improves at moderate water velocity, more information is required to determine the contributions of this factor on growth and body composition. Body composition and efficiency responses to the use of nutrients were determined in juvenile matrinxa Brycon amazonicus (Spix and Agassiz, 1829 fed with two dietary amounts of protein, 28 or 38% of crude protein (CP, and subjected to sustained swimming at a constant speed of 1.5 body lengths s−1 (BL s−1 or let to free swimming. The fish body composition under SS and fed with 28% of dietary protein showed 22% of increased in bulk protein and a 26% of decrease in water content in the white muscle. Red muscle depicted 70% less water content and a 10% more lipid. Nutrient retention was enhanced in fish subjected to SS and a higher gain of ethereal extract sustained was observed in the white muscle of exercised fish fed with 38% CP. The interaction between swimming and dietary protein resulted in a larger bulk of lipid in red muscle. Fish fed with 28% CP under SS at 1.5 BL s−1 presented the best utilization of dietary nutrients and body composition. Thus, this fish farming procedure is proposed as a promising management strategy for rearing matrinxa.

  3. Dietary uptake of Cu sorbed to hydrous iron oxide is linked to cellular toxicity and feeding inhibition in a benthic grazer

    Science.gov (United States)

    Cain, Daniel J.; Croteau, Marie-Noele; Fuller, Christopher C.; Ringwood, Amy H.

    2016-01-01

    Whereas feeding inhibition caused by exposure to contaminants has been extensively documented, the underlying mechanism(s) are less well understood. For this study, the behavior of several key feeding processes, including ingestion rate and assimilation efficiency, that affect the dietary uptake of Cu were evaluated in the benthic grazer Lymnaea stagnalis following 4–5 h exposures to Cu adsorbed to synthetic hydrous ferric oxide (Cu–HFO). The particles were mixed with a cultured alga to create algal mats with Cu exposures spanning nearly 3 orders of magnitude at variable or constant Fe concentrations, thereby allowing first order and interactive effects of Cu and Fe to be evaluated. Results showed that Cu influx rates and ingestion rates decreased as Cu exposures of the algal mat mixture exceeded 104 nmol/g. Ingestion rate appeared to exert primary control on the Cu influx rate. Lysosomal destabilization rates increased directly with Cu influx rates. At the highest Cu exposure where the incidence of lysosomal membrane damage was greatest (51%), the ingestion rate was suppressed 80%. The findings suggested that feeding inhibition was a stress response emanating from excessive uptake of dietary Cu and cellular toxicity.

  4. Dependence of intestinal amino acid uptake on dietary protein or amino acid levels

    International Nuclear Information System (INIS)

    Karasov, W.H.; Solberg, D.H.; Diamond, J.M.

    1987-01-01

    To understand how intestinal amino acid (AA) transport is regulated by dietary substrate levels, the authors measured uptake of seven radioactively-labelled AAs and glucose across the jejunal brush-border membrane of mice kept on one of three isocaloric rations differing in nitrogen content. In the high-protein ration, uptake increased by 77-81% for the nonessential, less toxic AAs, proline, and aspartate but only by 32-61% for the more toxic essential AAs tested. In the nitrogen-deficient ration, uptake decreased for the nonessential aspartate and proline but stayed constant or increased for essential AAs and for the nonessential alanine. These patterns imply independent regulation of the intestine's various AA transporters. With decreasing dietary AA (or protein), the imino acid and acidic AA private transporters are repressed, while activities of the basic AA transporter and the neutral AA public transporter decrease to an asymptote or else go through a minimum. These regulatory patterns can be understood as a compromise among conflicting constraints imposed by protein's multiple roles as a source of calories, nitrogen, and essential AAs and by the toxicity of essential AAs at high concentrations

  5. Gastrointestinal uptake and fate of cadmium in rainbow trout acclimated to sublethal dietary cadmium

    International Nuclear Information System (INIS)

    Chowdhury, M.J.; McDonald, D.G.; Wood, C.M.

    2004-01-01

    Adult rainbow trout were pre-exposed to a sublethal concentration of dietary Cd (500 mg/kg dry wt.) for 30 days to induce acclimation. A gastrointestinal dose of radiolabeled Cd (276 μg/kg wet wt.) was infused into the stomach of non-acclimated and Cd-acclimated trout through a stomach catheter. Repetitive blood samples over 24 h and terminal tissue samples were taken to investigate the gastrointestinal uptake, plasma clearance kinetics, and tissue distribution of Cd. Only a small fraction of the infused dose (non-acclimated: 2.4%; Cd-acclimated: 6.6%) was internalized across the gut wall, while most was bound in the gut tissues (10-24%) or remained in the lumen (16-33%) or lost from the fish (∼50%) over 24 h. Cadmium loading during pre-exposure produced a profound increase of total Cd in the blood plasma (∼28-fold) and red blood cells (RBC; ∼20-fold). The plasma Cd-time profiles consisted of an apparent rising (uptake) phase and a declining (clearance) phase with a maximum value of uptake in 4 h, suggesting that uptake of gastrointestinally infused Cd was very rapid. Acclimation to dietary Cd did not affect plasma Cd clearance (∼0.5 ml/min), but enhanced new Cd levels in the plasma (but not in the RBC), and resulted in a longer half-life for plasma Cd. Tissue total and new Cd levels varied in different regions of the gastrointestinal tract, and overall levels in gut tissues were much greater than in non-gut tissues, reflecting the Cd exposure route. Dietary Cd, but not the infused Cd, greatly increased total Cd levels of all gut tissues in the order posterior-intestine (640-fold) > cecae (180-fold) > mid-intestine (94-fold) > stomach (53-fold) in Cd-acclimated fish relative to naieve fish. Among non-gut tissues in the Cd-acclimated fish, the great increases of total Cd levels were observed in the liver (73-fold), kidney (39-fold), carcass (35-fold), and gills (30-fold). The results provide some clear conclusions that may be useful for environmental risk

  6. Uptake, depuration, and radiation dose estimation in zebrafish exposed to radionuclides via aqueous or dietary routes

    Energy Technology Data Exchange (ETDEWEB)

    Reinardy, Helena C., E-mail: helena.reinardy@plymouth.ac.uk [Ecotoxicology Research and Innovation Centre, School of Biomedical and Biological Sciences, The University of Plymouth (United Kingdom); Teyssie, Jean-Louis, E-mail: J.Teyssie@iaea.org [IAEA Marine Environment Laboratories, 4, Quai Antoine 1er, MC 98000 (Monaco); Jeffree, Ross A., E-mail: R.Jeffree@iaea.org [IAEA Marine Environment Laboratories, 4, Quai Antoine 1er, MC 98000 (Monaco); Faculty of Science, University of Technology, Sydney, PO Box 123, Broadway, NSW 2007 (Australia); Copplestone, David, E-mail: David.copplestone@stir.ac.uk [School of Biological and Environmental Sciences, University of Stirling (United Kingdom); Henry, Theodore B., E-mail: ted.henry@plymouth.ac.uk [Ecotoxicology Research and Innovation Centre, School of Biomedical and Biological Sciences, University of Plymouth (United Kingdom); Center for Environmental Biotechnology, University of Tennessee, Knoxville, TN 37996 (United States); Department of Forestry, Wildlife and Fisheries, University of Tennessee, Knoxville, TN 37996 (United States); Jha, Awadhesh N., E-mail: A.Jha@plymouth.ac.uk [Ecotoxicology Research and Innovation Centre, School of Biomedical and Biological Sciences, The University of Plymouth (United Kingdom)

    2011-09-01

    Understanding uptake and depuration of radionuclides in organisms is necessary to relate exposure to radiation dose and ultimately to biological effects. We investigated uptake and depuration of a mixture of radionuclides to link bioaccumulation with radiation dose in zebrafish, Danio rerio. Adult zebrafish were exposed to radionuclides ({sup 54}Mn, {sup 60}Co, {sup 65}Zn, {sup 75}Se, {sup 109}Cd, {sup 110m}Ag, {sup 134}Cs and {sup 241}Am) at tracer levels (< 200 Bq g{sup -1}) for 14 d, either via water or diet. Radioactivity concentrations were measured in whole body and excised gonads of exposed fish during uptake (14 d) and depuration phases (47 d and 42 d for aqueous and dietary exposures respectively), and dose rates were modelled from activity concentrations in whole body and exposure medium (water or diet). After 14-day aqueous exposure, radionuclides were detected in decreasing activity concentrations: {sup 75}Se > {sup 65}Zn > {sup 109}Cd > {sup 110m}Ag > {sup 54}Mn > {sup 60}Co > {sup 241}Am > {sup 134}Cs (range: 175-8 Bq g{sup 1}). After dietary exposure the order of radionuclide activity concentration in tissues (Bq g{sup -1}) was: {sup 65}Zn > {sup 60}Co > {sup 75}Se > {sup 109}Cd > {sup 110m}Ag > {sup 241}Am > {sup 54}Mn > {sup 134}Cs (range: 91-1 Bq g{sup -1}). Aqueous exposure resulted in higher whole body activity concentrations for all radionuclides except {sup 60}Co. Route of exposure did not appear to influence activity concentrations in gonads, except for {sup 54}Mn, {sup 65}Zn, and {sup 75}Se, which had higher activity concentrations in gonads following aqueous exposure. Highest gonad activity concentrations (Bq g{sup -1}) were for {sup 75}Se (211), {sup 109}Cd (142), and {sup 65}Zn (117), and highest dose rates ({mu}Gy h{sup -1}) were from {sup 241}Am (aqueous, 1050; diet 242). This study links radionuclide bioaccumulation data obtained in laboratory experiments with radiation dose determined by application of a dosimetry modelling tool, an

  7. Relative levels of dietary EPA and DHA impact gastric oxidation and essential fatty acid uptake.

    Science.gov (United States)

    Dasilva, Gabriel; Boller, Matthew; Medina, Isabel; Storch, Judith

    2018-05-01

    Previous research showed that increasing the proportion of docosahexaenoic acid (DHA) in marine lipid supplements significantly reduces associated health benefits compared with balanced eicosapentaenoic acid (EPA):DHA supplementation Dasilva et al., 2015 [1]. It was therefore hypothesized that the EPA and DHA molecules might have differential resistance to oxidation during gastric digestion and that the oxidation level achieved could be inversely correlated with intestinal absorption and, hence, with the resultant health benefits. Accordingly, we tested this proposed mechanism of action by investigating the degree of oxidation in the stomach, and the levels of bioaccessible lipids, of varying molar proportions of DHA and EPA (2:1, 1:1 and 1:2) using the dynamic gastrointestinal tract model TIM-1. In addition, small intestine enterocyte absorption and metabolism were simulated by Caco-2 cell monolayers that were incubated with these same varying proportions of DHA and EPA, and comparing oxidized and nonoxidized polyunsaturated fatty acids (PUFAs). The results show an inverse correlation between lipid oxidation products in the stomach and the levels of bioaccessible lipids. The balanced 1:1 EPA:DHA diet resulted in lower oxidation of PUFAs during stomach digestion relative to the other ratios tested. Finally, cell-based studies showed significantly lower assimilation of oxidized EPA and DHA substrates compared to nonoxidized PUFAs, as well as significant differences between the net uptake of EPA and DHA. Overall, the present work suggests that the correct design of diets and/or supplements containing marine lipids can strongly influence the stability and bioaccessibility of PUFAs during gastrointestinal digestion and subsequent absorption. This could modulate their health benefits related with inflammation, oxidative stress and metabolic disorders. Copyright © 2017 Elsevier Inc. All rights reserved.

  8. Dietary alkaloid sequestration in a poison frog: an experimental test of alkaloid uptake in Melanophryniscus stelzneri (Bufonidae).

    Science.gov (United States)

    Hantak, Maggie M; Grant, Taran; Reinsch, Sherri; McGinnity, Dale; Loring, Marjorie; Toyooka, Naoki; Saporito, Ralph A

    2013-12-01

    Several lineages of brightly colored anurans independently evolved the ability to secrete alkaloid-containing defensive chemicals from granular glands in the skin. These species, collectively referred to as 'poison frogs,' form a polyphyletic assemblage that includes some species of Dendrobatidae, Mantellidae, Myobatrachidae, Bufonidae, and Eleutherodactylidae. The ability to sequester alkaloids from dietary arthropods has been demonstrated experimentally in most poison frog lineages but not in bufonid or eleutherodactylid poison frogs. As with other poison frogs, species of the genus Melanophryniscus (Bufonidae) consume large numbers of mites and ants, suggesting they might also sequester defensive alkaloids from dietary sources. To test this hypothesis, fruit flies dusted with alkaloid/nutritional supplement powder were fed to individual Melanophryniscus stelzneri in two experiments. In the first experiment, the alkaloids 5,8-disubstituted indolizidine 235B' and decahydroquinoline were administered to three individuals for 104 days. In the second experiment, the alkaloids 3,5-disubstituted indolizidine 239Q and decahydroquinoline were given to three frogs for 153 days. Control frogs were fed fruit flies dusted only with nutritional supplement. Gas chromatography/mass spectrometry analyses revealed that skin secretions of all experimental frogs contained alkaloids, whereas those of all control frogs lacked alkaloids. Uptake of decahydroquinoline was greater than uptake of 5,8-disubstituted indolizidine, and uptake of 3,5-disubstituted indolizidine was greater than uptake of decahydroquinoline, suggesting greater uptake efficiency of certain alkaloids. Frogs in the second experiment accumulated a greater amount of alkaloid, which corresponds to the longer duration and greater number of alkaloid-dusted fruit flies that were consumed. These findings provide the first experimental evidence that bufonid poison frogs sequester alkaloid-based defenses from dietary

  9. Nitrate signals determine the sensing of nitrogen through differential expression of genes involved in nitrogen uptake and assimilation in finger millet.

    Science.gov (United States)

    Gupta, Alok Kumar; Gaur, Vikram Singh; Gupta, Sanjay; Kumar, Anil

    2013-06-01

    In order to understand the molecular basis of high nitrogen use efficiency of finger millet, five genes (EcHNRT2, EcLNRT1, EcNADH-NR, EcGS, and EcFd-GOGAT) involved in nitrate uptake and assimilation were isolated using conserved primer approaches. Expression profiles of these five genes along with the previously isolated EcDof1 was studied under increased KNO3 concentrations (0.15 to 1,500 μM) for 2 h as well as at 1.5 μM for 24 h in the roots and shoots of 25 days old nitrogen deprived two contrasting finger millet genotypes (GE-3885 and GE-1437) differing in grain protein content (13.76 and 6.15 %, respectively). Time kinetics experiment revealed that, all the five genes except EcHNRT2 in the leaves of GE-3885 were induced within 30 min of nitrate exposure indicating that there might be a greater nitrogen deficit in leaves and therefore quick transportation of nitrate signals to the leaves. Exposing the plants to increasing nitrate concentrations for 2 h showed that in roots of GE-3885, NR was strongly induced while GS was repressed; however, the pattern was found to be reversed in leaves of GE-1437 indicating that in GE-3885, most of the nitrate might be reduced in the roots but assimilated in leaves and vice-versa. Furthermore, compared with the low-protein genotype, expression of HNRT2 was strongly induced in both roots and shoots of high-protein genotype at the least nitrate concentration supplied. This further indicates that GE-3885 is a quick sensor of nitrogen compared with the low-protein genotype. Furthermore, expression of EcDof1 was also found to overlap the expression of NR, GS, and GOGAT indicating that Dof1 probably regulates the expression of these genes under different conditions by sensing the nitrogen fluctuations around the root zone.

  10. Bioaccumulation and subcellular partitioning of zinc in rainbow trout (Oncorhynchus mykiss): Cross-talk between waterborne and dietary uptake

    International Nuclear Information System (INIS)

    Sappal, Ravinder; Burka, John; Dawson, Susan; Kamunde, Collins

    2009-01-01

    Zinc homeostasis was studied at the tissue and gill subcellular levels in rainbow trout (Oncorhynchus mykiss) following waterborne and dietary exposures, singly and in combination. Juvenile rainbow trout were exposed to 150 or 600 μg l -1 waterborne Zn, 1500 or 4500 μg g -1 dietary Zn, and a combination of 150 μg l -1 waterborne and 1500 μg g -1 dietary Zn for 40 days. Accumulation of Zn in tissues and gill subcellular fractions was measured. At the tissue level, the carcass acted as the main Zn depot containing 84-90% of whole body Zn burden whereas the gill held 4-6%. At the subcellular level, the majority of gill Zn was bioavailable with the estimated metabolically active pool being 81-90%. Interestingly, the nuclei-cellular debris fraction bound the highest amount (40%) of the gill Zn burden. There was low partitioning of Zn into the detoxified pool (10-19%) suggesting that sequestration and chelation are not major mechanisms of cellular Zn homeostasis in rainbow trout. Further, the subcellular partitioning of Zn did not conform to the spill-over model of metal toxicity because Zn binding was indiscriminate irrespective of exposure concentration and duration. The contribution of the branchial and gastrointestinal uptake pathways to Zn accumulation depended on the tissue. Specifically, in plasma, blood cells, and gill, uptake from water was dominant whereas both pathways appeared to contribute equally to Zn accumulation in the carcass. Subcellularly, additive uptake from the two pathways was observed in the heat-stable proteins (HSP) fraction. Toxicologically, Zn exposure caused minimal adverse effects manifested by a transitory inhibition of protein synthesis in gills in the waterborne exposure. Overall, subcellular fractionation appears to have value in the quest for a better understanding of Zn homeostasis and interactions between branchial and gastrointestinal uptake pathways

  11. Bioaccumulation and subcellular partitioning of zinc in rainbow trout (Oncorhynchus mykiss): Cross-talk between waterborne and dietary uptake

    Energy Technology Data Exchange (ETDEWEB)

    Sappal, Ravinder; Burka, John; Dawson, Susan [Department of Biomedical Sciences, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE C1A 4P3 (Canada); Kamunde, Collins [Department of Biomedical Sciences, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE C1A 4P3 (Canada)], E-mail: ckamunde@upei.ca

    2009-03-09

    Zinc homeostasis was studied at the tissue and gill subcellular levels in rainbow trout (Oncorhynchus mykiss) following waterborne and dietary exposures, singly and in combination. Juvenile rainbow trout were exposed to 150 or 600 {mu}g l{sup -1} waterborne Zn, 1500 or 4500 {mu}g g{sup -1} dietary Zn, and a combination of 150 {mu}g l{sup -1} waterborne and 1500 {mu}g g{sup -1} dietary Zn for 40 days. Accumulation of Zn in tissues and gill subcellular fractions was measured. At the tissue level, the carcass acted as the main Zn depot containing 84-90% of whole body Zn burden whereas the gill held 4-6%. At the subcellular level, the majority of gill Zn was bioavailable with the estimated metabolically active pool being 81-90%. Interestingly, the nuclei-cellular debris fraction bound the highest amount (40%) of the gill Zn burden. There was low partitioning of Zn into the detoxified pool (10-19%) suggesting that sequestration and chelation are not major mechanisms of cellular Zn homeostasis in rainbow trout. Further, the subcellular partitioning of Zn did not conform to the spill-over model of metal toxicity because Zn binding was indiscriminate irrespective of exposure concentration and duration. The contribution of the branchial and gastrointestinal uptake pathways to Zn accumulation depended on the tissue. Specifically, in plasma, blood cells, and gill, uptake from water was dominant whereas both pathways appeared to contribute equally to Zn accumulation in the carcass. Subcellularly, additive uptake from the two pathways was observed in the heat-stable proteins (HSP) fraction. Toxicologically, Zn exposure caused minimal adverse effects manifested by a transitory inhibition of protein synthesis in gills in the waterborne exposure. Overall, subcellular fractionation appears to have value in the quest for a better understanding of Zn homeostasis and interactions between branchial and gastrointestinal uptake pathways.

  12. Nitrogen uptake and assimilation by two families of loblolly pine under simulated field conditions in the greenhouse

    International Nuclear Information System (INIS)

    White, T.A.

    1989-01-01

    While significant success has been achieved in pine tree improvement, comparatively little is known about the physiological strategies employed by superior genotypes. The central hypothesis of this research was that dissimilarities of two families of loblolly pine (Pinus taeda L.) in absorption, use, and allocation of N and C during and after periods of N stress explain differences in productivity. One group of trees was exposed to NH 4 + -N (100:0 experiment) for 84 d while a second group was grown with a 70% NH 4 + : 30% NO 3 - -N solution (70:30 experiment). Ammonium-N was labelled with 15 N. Half of the seedlings had restricted N supplies from 28 d to 70 d. Results were compared to the unstressed half of each group. Nitrogen stress resulted in significantly lower biomass production and N uptake in both families in the 70:30 experiment. The superior family recovered these losses 14 d after the N stress was removed. No difference in biomass existed in either family following N stress in the 100:0 experiment

  13. Chronic effects of dietary carbohydrate variation on [18F]-2-fluoro-2-deoxyglucose uptake in rodent heart.

    Science.gov (United States)

    Fine, Eugene J; Miao, Weibing; Koba, Wade; Volek, Jeff S; Blaufox, M Donald

    2009-09-01

    Measured cardiac [F]-2-fluoro-2-deoxyglucose (FDG) activity in human PET scans is variable despite efforts to standardize patient preparation. Heart uptake can obscure chest disease, and is of physiologic interest. Short-term carbohydrate (CHO) restriction can reduce FDG uptake, although unreliably, whereas long-term restriction of CHO has not been systematically studied. It would be valuable to understand FDG hearts' chronic dietary dependence. Fifteen Wistar rats (age 4 weeks) were randomized to three diet groups (n = 5) of low (0.1% of total energy), intermediate (52%), and high (78%) CHO content (LC, IC, and HC, respectively). After 4 weeks, blood for ketone bodies (KB), glucose, insulin, and glucagon was obtained, followed in 2 days by whole-body PET with 37 MBq FDG. Diet groups were switched every 4 weeks to control for the effects of dietary order. Heart maximal standardized uptake value was compared among animals. Heart mean maximal standardized uptake value was dramatically reduced for LC (3.4+/-0.4; P<0.001) compared with either IC (10.9+/-0.7) or HC (11.0+/-0.7) (P=NS, IC vs. HC). KB (mumol/l) differed widely (P<0.001) in LC (718.6+/-40.0) versus IC (120.3+/-34.0) and HC (99.2+/-32.1) (P=NS, IC vs. HC), whereas glucose, insulin, and glucagon did not differ among the groups. Sustained CHO-restriction results in marked, reproducibly reduced cardiac FDG uptake. Six-fold to seven-fold increased KB concentrations provide alternative substrate to glucose.

  14. Effect of dietary fat on uptake of lysine, phenylalanine, leucine and methionine by bovine mammary tissue slices in vitro

    International Nuclear Information System (INIS)

    Nianogo, A.J.; Amos, H.E.; Dean, R.; Froetschel, A.; Fernandez, J.M.

    1989-01-01

    Four mature Holstein cows in late lactation were blocked in two groups based on milk production, in a 2x2 reversal with 21-day periods, and fed: (A) control diet; (B) A plus 1 kg/day tallow. Cows were fed sorghum silage ad libitum. Blood samples were collected from the jugular vein on day 15, 17, and 19 of each period. Fat did not effect DM intake or milk yield, however milk CP yield was 20% lower. Plasma lipids increased 33.6%, glucose decreased 9% and insulin/glucagon ratio decreased 21.2% in cow fed fat. After period two, cows were slaughtered and mammary tissue sampled for incubation in Krebs Ringer bicarbonate buffer containing 22 AA at arterial concentration and .225 μCi/ml of 14 C-labelled L-Leu, L-Phe, L-Lys or D/L Met. Dietary fat decreased tissue AA uptake rate by 21.2%. Uptake was 4.8, 10.3, 17.8 and 2.4 x 10 -3 μM/min/gm of tissue DM for Phe, Lys, Leu and Met, respectively. Results suggest that dietary fat may decrease milk protein synthesis by lowering the rate of AA uptake

  15. The effects of dietary iron concentration on gastrointestinal and branchial assimilation of both iron and cadmium in zebrafish (Danio rerio)

    Energy Technology Data Exchange (ETDEWEB)

    Cooper, C.A. [Division of Health and Life Sciences, King' s College London, 150 Stamford Street, London SE1 9NN (United Kingdom)]. E-mail: chris.cooper@ex.ac.uk; Handy, R.D. [School of Biological Sciences, University of Plymouth, Drake Circus, Plymouth PL4 8AA (United Kingdom); Bury, N.R. [Division of Health and Life Sciences, King' s College London, 150 Stamford Street, London SE1 9NN (United Kingdom)

    2006-08-23

    Zebrafish (Danio rerio) were fed either a diet containing 33 mg Fe kg{sup -1} (low) or 95 mg Fe kg{sup -1} (normal) for 10 weeks, after which short-term Cd and Fe uptake by the gastrointestinal tract and gill was assessed. Carcass metal content and transcript levels of the iron importer, Divalent Metal Transporter 1 (DMT1) and an iron exporter, ferroportin1, in both the gastrointestinal tract and gill were also measured. Fish fed the low Fe diet accumulated 13 times more Cd into their livers via the gastrointestinal tract than those fed the normal Fe diet. However, no significant increase in liver Fe accumulation was measured. Concomitantly, when exposed to 48 nmol Cd L{sup -1} fish fed the low Fe diet exhibited a {approx}4-fold increase in Cd accumulation on the gill and in the liver, compared to those fed a normal diet. In addition, fish fed the low Fe diet also significantly accumulated more Fe on the gill (nine-fold increase) and into the carcass (four-fold increase) when exposed to 96 nmol Fe L{sup -1}, compared to fish fed a normal diet. Surprisingly, carcass Fe, Ca and Mg concentrations were increased in fish fed the low Fe diet, which suggests that Fe body levels may not be a good indicator of whether a fish is more or less susceptible to increased non-essential metal accumulation via an Fe uptake pathway. However, significantly elevated transcript levels of DMT1 and ferroportin1 (2.7- and 3.8-fold induction, respectively) were seen in the gastrointestinal tract, and DMT1 in the gills (1.8-fold induction) of zebrafish fed a low Fe diet. The correlation between Cd uptake and DMT1 expression suggests that one route of uptake of Cd, either from the diet or from the water, could be via DMT1.

  16. 14CO2-assimilation, translocation of 14C, and 14C-carbonate uptake in different organs of spring barley plants in relation to adult-plant resistance to powdery mildew

    International Nuclear Information System (INIS)

    Hwang, B.K.; Ibenthal, W.-D.; Heitefuss, R.

    1986-01-01

    The cultivar Peruvian of spring barley, which is susceptible at all growth stages, and Asse, which exhibits adult-plant resistance to powdery mildew, were compared in 14 CO 2 assimilation, distribution of 14 C, and 14 C-carbonate uptake in different organs of healthy and infected plants. The reduction of 14 CO 2 assimilation in infected plants at the first and fourth leaf stages was greater in Peruvian than in Asse. In Peruvian, the 14 C which was fixed by the infected third leaf of plants with mildew on the lower 3 leaves remained in the third leaves with very little translocation to other parts of the plant. Infection of the lower three leaves at the fourth leaf stage reduced 14 CO 2 assimilation in noninfected fourth leaves of Asse less than that of Peruvian, but the flow of 14 C from the healthy fourth leaves into other plant parts such as leaf sheaths was markedly stimulated in Peruvian compared to Asse. Infection also reduced the uptake of 14 C-carbonate by seedling roots, the reduction being greater in Peruvian than Asse. A greater proportion of the 14 C absorbed by roots of Asse was translocated to the infected leaves than that of Peruvian. It was concluded that powdery mildew disrupted the normal pattern of photosynthesis and translocation of metabolites in a susceptible cultivar more markedly than in an adult-plant-resistant cultivar of spring barley. (author)

  17. Translocation of labelled assimilates, ion uptake and nucleic acids contents in zea mays plants as influenced by application of the herbicide dual and the bioregulaators GA3 and kinetin

    International Nuclear Information System (INIS)

    Hassanein, R.AA.; Khodary, S.E.A.; Abdel-Aziz, S.M.

    2001-01-01

    Maize seedlings, grown hydroponic for one month, were undertaken o investigate the effect of dual (metolachlor), bio regulators (GA 3 and kinetin) and their interaction with dual on translocation rate of assimilates, nucleic acids content. ion uptake and the activities of protease and nitrate reductase enzymes. Dual at all concentrations decreased the rate of assimilates translocation and nucleic acids levels. Also reduction in the ability of the treated plants to absorb ions from the growth medium as well as the activities of nitrate reductase and protease enzymes were retarded upon dual application. The results also revealed that treatment with either GA 3 or kinetin in combination with dual, reversed the adverse action of the herbicide on zea mays plants

  18. An ATP Binding Cassette Transporter Mediates the Uptake of alpha-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates

    NARCIS (Netherlands)

    Ejby, Morten; Fredslund, Folmer; Andersen, Joakim Mark; Zagar, Andreja Vujicic; Henriksen, Jonas Rosager; Andersen, Thomas Lars; Svensson, Birte; Slotboom, Dirk Jan; Abou Hachem, Maher

    2016-01-01

    The molecular details and impact of oligosaccharide uptake by distinct human gut microbiota (HGM) are currently not well understood. Non-digestible dietary galacto- and gluco--(1,6)-oligosaccharides from legumes and starch, respectively, are preferentially fermented by mainly bifidobacteria and

  19. Effects of stress, circadian rhythms, and dietary sodium on brain cell-nuclear uptake of aldosterone and corticosterone

    International Nuclear Information System (INIS)

    Yongue, B.G.

    1985-01-01

    The binding of the adrenal steroid hormones aldosterone (ALD) and corticosterone (CORT) in brain cell-nuclei has been implicated as a necessary step in the behavioral and physiological actions of these hormones. In vivo uptake of radioactively labeled ALD and CORT in adrenalectomized (ADX) rats indicates a strong cell-nuclear localization of both of these hormones in limbic brain regions (such as hippocampus, septum and amygdala). Research using sub-cellular fractionation and radioimmunoassay (RIA), has confirmed both the presence of endogenously secreted CORT in cell-nuclei and its limbic localization in the brains of adrenal-intact rats. In this study, environmental and dietary factors were manipulated to induce variation in serum ALD and CORT. A series of experiments employing sub-cellular fractionation and RIA were performed, which reveal that: (1) endogenously secreted ALD and CORT, are concentrated by cell-nuclei of the brain in adrenal-intact rats, (2) the majority of the corticosteroids measured in ethanol extracts of brain cell-nuclei are associated with receptor molecules, and (3) the regional distribution of endogenously secreted ALD differs markedly from the predominantly limbic pattern predicted from in vivo uptake of labeled ALD in ADX rats. Instead, brain cell-nuclear ALD is heavily concentrated in the hypothalamus, which supports the hypothesized relationship between the interaction of ALD and angiotensin in the brain and the behavioral regulation of fluid/electrolyte balance

  20. Effects of dietary calcium and cadmium on cadmium accumulation, calcium and cadmium uptake from the water, and their interactions in juvenile rainbow trout

    Energy Technology Data Exchange (ETDEWEB)

    Baldisserotto, B. [Departamento de Fisiologia, Universidade Federal de Santa Maria, 97105.900 Santa Maria, RS (Brazil); Chowdhury, M.J. [Department of Biology, McMaster University, Hamilton, Ont., L8S 4K1 (Canada); Wood, Chris M. [Department of Biology, McMaster University, Hamilton, Ont., L8S 4K1 (Canada)]. E-mail: woodcm@mcmaster.ca

    2005-03-25

    The objective of this study was to examine the effects of chronically elevated dietary Ca{sup 2+} (as CaCO{sub 3}), alone and in combination with elevated dietary Cd, on survival, growth, and Cd and Ca{sup 2+} accumulation in several internal compartments in juvenile rainbow trout (Oncorhynchus mykiss). In addition, effects on short-term branchial uptake and internal distribution of newly accumulated waterborne Ca{sup 2+} and Cd during acute waterborne Cd exposure (50 {mu}g/L as CdNO{sub 3} for 3 h) were monitored using radiotracers ({sup 45}Ca, {sup 65}Cd). Fish were fed with four diets: 20 mg Ca{sup 2+}/g food (control), 50 mg Ca{sup 2+}/g food, 300 {mu}g Cd/g food, and 50 mg Ca{sup 2+}/g + 300 {mu}g Cd/g food for 30 days. There were no significant effects on growth, mortality, or total body Ca{sup 2+} accumulation. The presence of elevated Ca{sup 2+}, Cd, or Ca{sup 2+} + Cd in the diet all reduced waterborne Ca{sup 2+} uptake in a short-term experiment (3 h), though the inhibitory mechanisms appeared to differ. The effects were marked after 15 days of feeding, but attenuated by 30 days, except when the diet was elevated in both Ca{sup 2+} and Cd. The presence of elevated Ca{sup 2+} in the diet had only modest influence on Cd uptake from the water during acute Cd challenges but greatly depressed Cd uptake from the diet and accumulation in most internal tissues. None of the treatment diets prevented the decreases in waterborne Ca{sup 2+} uptake and new Ca{sup 2+} accumulation in internal tissues caused by acute exposure to waterborne Cd. In conclusion, there are complex interactions between waterborne and dietary effects of Ca{sup 2+} and Cd. Elevated dietary Ca{sup 2+} protects against both dietary and waterborne Cd uptake, whereas both waterborne and dietary Cd elevations cause reduced waterborne Ca{sup 2+} uptake.

  1. Dietary Factors Modulate Iron Uptake in Caco-2 Cells from an Iron Ingot Used as a Home Fortificant to Prevent Iron Deficiency

    Directory of Open Access Journals (Sweden)

    Ildefonso Rodriguez-Ramiro

    2017-09-01

    Full Text Available Iron deficiency is a major public health concern and nutritional approaches are required to reduce its prevalence. The aim of this study was to examine the iron bioavailability of a novel home fortificant, the “Lucky Iron Fish™” (LIF (www.luckyironfish.com/shop, Guelph, Canada and the impact of dietary factors and a food matrix on iron uptake from LIF in Caco-2 cells. LIF released a substantial quantity of iron (about 1.2 mM at pH 2 but this iron was only slightly soluble at pH 7 and not taken up by cells. The addition of ascorbic acid (AA maintained the solubility of iron released from LIF (LIF-iron at pH 7 and facilitated iron uptake by the cells in a concentration-dependent manner. In vitro digestion of LIF-iron in the presence of peas increased iron uptake 10-fold. However, the addition of tannic acid to the digestion reduced the cellular iron uptake 7.5-fold. Additionally, LIF-iron induced an overproduction of reactive oxygen species (ROS, similar to ferrous sulfate, but this effect was counteracted by the addition of AA. Overall, our data illustrate the major influence of dietary factors on iron solubility and bioavailability from LIF, and demonstrate that the addition of AA enhances iron uptake and reduces ROS in the intestinal lumen.

  2. Effects of administration route, dietary condition, and blood glucose level on kinetics and uptake of 18F-FDG in mice.

    Science.gov (United States)

    Wong, Koon-Pong; Sha, Wei; Zhang, Xiaoli; Huang, Sung-Cheng

    2011-05-01

    The effects of dietary condition and blood glucose level on the kinetics and uptake of (18)F-FDG in mice were systematically investigated using intraperitoneal and tail-vein injection. Dynamic PET was performed for 60 min on 23 isoflurane-anesthetized male C57BL/6 mice after intravenous (n = 11) or intraperitoneal (n = 12) injection of (18)F-FDG. Five and 6 mice in the intravenous and intraperitoneal groups, respectively, were kept fasting overnight (18 ± 2 h), and the others were fed ad libitum. Serial blood samples were collected from the femoral artery to measure (18)F-FDG and glucose concentrations. Image data were reconstructed using filtered backprojection with CT-based attenuation correction. The standardized uptake value (SUV) was estimated from the 45- to 60-min image. The metabolic rate of glucose (MRGlu) and (18)F-FDG uptake constant (K(i)) were derived by Patlak graphical analysis. In the brain, SUV and K(i) were significantly higher in fasting mice with intraperitoneal injection, but MRGlu did not differ significantly under different dietary states and administration routes. Cerebral K(i) was inversely related to elevated blood glucose levels, irrespective of administration route or dietary state. In myocardium, SUV, K(i), and MRGlu were significantly lower in fasting than in nonfasting mice for both routes of injection. Myocardial SUV and K(i) were strongly dependent on the dietary state, and K(i) did not correlate with the blood glucose level. Similar results were obtained for skeletal muscle, although the differences were not as pronounced. Intraperitoneal injection is a valid alternative route, providing pharmacokinetic data equivalent to data from tail-vein injection for small-animal (18)F-FDG PET. Cerebral K(i) varies inversely with blood glucose level, but the measured cerebral MRGlu does not correlate with blood glucose level or dietary condition. Conversely, the K(i) values of the myocardium and skeletal muscle are strongly dependent on

  3. The chemopreventive effect of the dietary compound kaempferol on the MCF-7 human breast cancer cell line is dependent on inhibition of glucose cellular uptake.

    Science.gov (United States)

    Azevedo, Cláudia; Correia-Branco, Ana; Araújo, João R; Guimarães, João T; Keating, Elisa; Martel, Fátima

    2015-01-01

    Our aim was to investigate the effect of several dietary polyphenols on glucose uptake by breast cancer cells. Uptake of (3)H-deoxy-D-glucose ((3)H-DG) by MCF-7 cells was time-dependent, saturable, and inhibited by cytochalasin B plus phloridzin. In the short-term (26 min), myricetin, chrysin, genistein, resveratrol, kaempferol, and xanthohumol (10-100 µM) inhibited (3)H-DG uptake. Kaempferol was found to be the most potent inhibitor of (3)H-DG uptake [IC50 of 4 µM (1.6-9.8)], behaving as a mixed-type inhibitor. In the long-term (24 h), kaempferol (30 µM) was also able to inhibit (3)H-DG uptake, associated with a 40% decrease in GLUT1 mRNA levels. Interestingly enough, kaempferol (100 µM) revealed antiproliferative (sulforhodamine B and (3)H-thymidine incorporation assays) and cytotoxic (extracellular lactate dehydrogenase activity determination) properties, which were mimicked by low extracellular (1 mM) glucose conditions and reversed by high extracellular (20 mM) glucose conditions. Finally, exposure of cells to kaempferol (30 µM) induced an increase in extracellular lactate levels over time (to 731 ± 32% of control after a 24 h exposure), due to inhibition of MCT1-mediated lactate cellular uptake. In conclusion, kaempferol potently inhibits glucose uptake by MCF-7 cells, apparently by decreasing GLUT1-mediated glucose uptake. The antiproliferative and cytotoxic effect of kaempferol in these cells appears to be dependent on this effect.

  4. Atmospheric H2S and SO2 as sulfur sources for Brassica juncea and Brassica rapa: Regulation of sulfur uptake and assimilation

    NARCIS (Netherlands)

    Aghajanzadeh, T.; Hawkesford, M.J.; De Kok, L.J.

    2016-01-01

    Brassica juncea and Brassica rapa were able to utilize foliarly absorbed H2S and SO2 as sulfur source for growth and resulted in a decreased sink capacity of the shoot for sulfur supplied by the root and subsequently in a partial decrease in sulfate uptake capacity of the roots. Sulfate-deprived

  5. Copper uptake kinetics and regulation in a marine fish after waterborne copper acclimation

    International Nuclear Information System (INIS)

    Dang Fei; Zhong Huan; Wang Wenxiong

    2009-01-01

    The uptake kinetics and regulation of copper in a marine predatory fish, the black sea bream Acanthopagrus schlegeli after acclimation to waterborne Cu were examined, using radiotracer techniques. The dissolved Cu uptake followed a linear pattern during the time of exposure, and the calculated uptake rate constant was 6.24 L kg -1 day -1 . The efflux rate constant was 0.091 day -1 following dietary uptake of Cu, and the dietary assimilation efficiency (AE) of Cu varied between 1.7% and 10.9% after the fish were fed with three types of prey (oysters, clams and brine shrimp). After the fish were acclimated at a nominal concentration of 50 μg Cu L -1 for 14 days, the Cu uptake rate and efflux rate constant did not change significantly, but the Cu body concentrations and metallothionein (MT) concentrations in fish tissues increased significantly. Subcellular Cu distributions were also modified. Significant MT induction was observed in response to increased Cu tissue concentrations, indicating that MT rather than the uptake kinetics may play a primary role in Cu regulation during waterborne Cu acclimation in this marine fish. Moreover, the high Cu efflux may also be important in Cu regulation during long-term exposure. Our modeling calculations indicated that dietary uptake was likely to be the main route for Cu bioaccumulation in the fish, and the relative contribution of waterborne and dietary uptake depended on the bioconcentration factor (BCF) of the prey and ingestion rate of fish.

  6. Regulation of nitrogen uptake and assimilation: Effects of nitrogen source and root-zone and aerial environment on growth and productivity of soybean

    Science.gov (United States)

    Raper, C. David, Jr.

    1994-01-01

    The interdependence of root and shoot growth produces a functional equilibrium as described in quantitative terms by numerous authors. It was noted that bean seedlings grown in a constant environment tended to have a constant distribution pattern of dry matter between roots and leaves characteristic of the set of environmental conditions. Disturbing equilibrium resulted in a change in relative growth of roots and leaves until the original ratio was restored. To define a physiological basis for regulation of nitrogen uptake within the balance between root and shoot activities, the authors combined a partioning scheme and a utilization priority assumption in which: (1) all carbon enters the plant through photosynthesis in leaves and all nitrogen enters the plant through active uptake by roots, (2) nitrogen uptake by roots and secretion into the xylem for transport to the shoots are active processes, (3) availability of exogenous nitrogen determines concentration of soluble carbohydrates within the roots, (4) leaves are a source and a sink for carbohydrates, and (5) the requirement for nitrogen by leaf growth is proportionally greater during initiation and early expansion than during later expansion.

  7. Relationship of Nitrogen Use Efficiency with the Activities of Enzymes Involved in Nitrogen Uptake and Assimilation of Finger Millet Genotypes Grown under Different Nitrogen Inputs

    Directory of Open Access Journals (Sweden)

    Nidhi Gupta

    2012-01-01

    Full Text Available Nitrogen responsiveness of three-finger millet genotypes (differing in their seed coat colour PRM-1 (brown, PRM-701 (golden, and PRM-801 (white grown under different nitrogen doses was determined by analyzing the growth, yield parameters and activities of nitrate reductase (NR, glutamine synthetase (GS, glutamate synthase; GOGAT, and glutamate dehydrogenase (GDH at different developmental stages. High nitrogen use efficiency and nitrogen utilization efficiency were observed in PRM-1 genotype, whereas high nitrogen uptake efficiency was observed in PRM-801 genotype. At grain filling nitrogen uptake efficiency in PRM-1 negatively correlated with NR, GS, GOGAT activities whereas it was positively correlated in PRM-701 and PRM-801, however, GDH showed a negative correlation. Growth and yield parameters indicated that PRM-1 responds well at high nitrogen conditions while PRM-701 and PRM-801 respond well at normal and low nitrogen conditions respectively. The study indicates that PRM-1 is high nitrogen responsive and has high nitrogen use efficiency, whereas golden PRM-701 and white PRM-801 are low nitrogen responsive genotypes and have low nitrogen use efficiency. However, the crude grain protein content was higher in PRM-801 genotype followed by PRM-701 and PRM-1, indicating negative correlation of nitrogen use efficiency with source to sink relationship in terms of seed protein content.

  8. Influence of a direct-fed microbial and xylanase enzyme on the dietary energy uptake efficiency and performance of broiler chickens.

    Science.gov (United States)

    Murugesan, Ganapathi Raj; Persia, Michael E

    2015-09-01

    Efficacy of a multi-strain direct-fed microbial product (PoultryStar(®) ME; PS) and a xylanase enzyme product on the dietary energy utilization efficiency and resulting performance in broiler chickens was evaluated. Apart from performance parameters, cecal and serum metabolites and activities of hepatic enzymes involved in energy metabolism were also determined. Ross 308 chicks were fed one of four experimental diets [control (CON), CON + PS, CON + xylanase and CON + PS + xylanase] using a 2 × 2 factorial arrangement from 1-21 days of age. Cecal proportions of propionate and butyrate, as well as total short-chain fatty acid concentration were increased (P energy uptake and hepatic energy retention. The combination additively increased the FCR, suggesting involvement of synergistic modes of actions. © 2014 Society of Chemical Industry.

  9. Muscle glycogen content and glucose uptake during exercise in humans: influence of prior exercise and dietary manipulation

    DEFF Research Database (Denmark)

    Steensberg, Adam; van Hall, Gerrit; Keller, Charlotte

    2002-01-01

    on two occasions: one after 60 min of two-legged cycling (16 h prior to the experimental trial) followed by a high carbohydrate diet (HCHO) and the other after the same exercise followed by a low carbohydrate diet (LCHO) (Series 2). Muscle glycogen was decreased by 40 % when comparing the pre-exercised......There are many factors that can influence glucose uptake by contracting skeletal muscle during exercise and although one may be intramuscular glycogen content, this relationship is at present not fully elucidated. To test the hypothesis that muscle glycogen concentration influences glucose uptake...... during exercise, 13 healthy men were studied during two series of experiments. Seven men completed 4 h of two-legged knee extensor exercise 16 h after reducing of muscle glycogen by completing 60 min of single-legged cycling (Series 1). A further six men completed 3 h of two-legged knee extensor exercise...

  10. An ATP Binding Cassette Transporter Mediates the Uptake of α-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates.

    Science.gov (United States)

    Ejby, Morten; Fredslund, Folmer; Andersen, Joakim Mark; Vujičić Žagar, Andreja; Henriksen, Jonas Rosager; Andersen, Thomas Lars; Svensson, Birte; Slotboom, Dirk Jan; Abou Hachem, Maher

    2016-09-16

    The molecular details and impact of oligosaccharide uptake by distinct human gut microbiota (HGM) are currently not well understood. Non-digestible dietary galacto- and gluco-α-(1,6)-oligosaccharides from legumes and starch, respectively, are preferentially fermented by mainly bifidobacteria and lactobacilli in the human gut. Here we show that the solute binding protein (BlG16BP) associated with an ATP binding cassette (ABC) transporter from the probiotic Bifidobacterium animalis subsp. lactis Bl-04 binds α-(1,6)-linked glucosides and galactosides of varying size, linkage, and monosaccharide composition with preference for the trisaccharides raffinose and panose. This preference is also reflected in the α-(1,6)-galactoside uptake profile of the bacterium. Structures of BlG16BP in complex with raffinose and panose revealed the basis for the remarkable ligand binding plasticity of BlG16BP, which recognizes the non-reducing α-(1,6)-diglycoside in its ligands. BlG16BP homologues occur predominantly in bifidobacteria and a few Firmicutes but lack in other HGMs. Among seven bifidobacterial taxa, only those possessing this transporter displayed growth on α-(1,6)-glycosides. Competition assays revealed that the dominant HGM commensal Bacteroides ovatus was out-competed by B. animalis subsp. lactis Bl-04 in mixed cultures growing on raffinose, the preferred ligand for the BlG16BP. By comparison, B. ovatus mono-cultures grew very efficiently on this trisaccharide. These findings suggest that the ABC-mediated uptake of raffinose provides an important competitive advantage, particularly against dominant Bacteroides that lack glycan-specific ABC-transporters. This novel insight highlights the role of glycan transport in defining the metabolic specialization of gut bacteria. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  11. Effects of oxygen delivery, dietary nitrate, intensified training and prior exercise on oxygen uptake kinetics and performance in humans

    DEFF Research Database (Denmark)

    Christensen, Peter Møller

    benefits from supplementing with nitrate to improve exercise efficiency and performance in endurance trained subjects. Furthermore it appears difficult to improve VO2 kinetics with intensified training in trained athletes; however intense exercise can amplify the VO2 response during subsequent high......In response to an increase in the metabolic demand the oxygen uptake (VO2) increases in an exponential fashion in exercising muscles and stabilizes after 1-2 min eventually reaching a plateau or steady state where the energy demand is matched by the l vel of VO2. VO2 kinetics describes the distinct...... phases of the VO2 response at the onset of exercise. Fast VO2 kinetics are considered to be beneficial in intense endurance sports with competitions lasting ~2-8 min, whereas low VO2 at steady state (high efficiency) is considered beneficial especially in events of longer duration. To improve...

  12. Zebrafish ( Danio rerio) as a model for investigating the safety of GM feed ingredients (soya and maize); performance, stress response and uptake of dietary DNA sequences.

    Science.gov (United States)

    Sissener, Nini H; Johannessen, Lene E; Hevrøy, Ernst M; Wiik-Nielsen, Christer R; Berdal, Knut G; Nordgreen, Andreas; Hemre, Gro-Ingunn

    2010-01-01

    A 20-d zebrafish (Danio rerio) feeding trial, in which a near doubling of fish weight was achieved, was conducted with GM feed ingredients to evaluate feed intake, growth, stress response and uptake of dietary DNA. A partial aim of the study was to assess zebrafish as a model organism in GM safety assessments. Roundup Ready soya (RRS), YieldGard Bt maize (MON810) and their non-modified, maternal, near-isogenic lines were used in a 2 x 2 factorial design. Soya variety and maize variety were the main factors, both with two levels; non-GM and GM. Compared with fish fed non-GM maize, those fed GM maize exhibited significantly better growth, had lower mRNA transcription levels of superoxide dismutase (SOD)-1 and a tendency (non-significant) towards lower transcription of heat shock protein 70 in liver. Sex of the fish and soya variety had significant interaction effects on total RNA yield from the whole liver and transcription of SOD-1, suggesting that some diet component affecting males and females differently was present in different levels in the GM and the non-GM soya used in the present study. Dietary DNA sequences were detected in all of the organs analysed, but not all of the samples. Soya and maize rubisco (non-transgenic, multicopy genes) were most frequently detected, while MON810 transgenic DNA fragments were detected in some samples and RRS fragments were not detected. In conclusion, zebrafish shows promise as a model for this application.

  13. Copper uptake kinetics and regulation in a marine fish after waterborne copper acclimation

    Energy Technology Data Exchange (ETDEWEB)

    Dang Fei; Zhong Huan [AMCE and Department of Biology, Hong Kong University of Science and Technology (HKUST), Clear Water Bay, Kowloon (Hong Kong); Wang Wenxiong, E-mail: wwang@ust.hk [AMCE and Department of Biology, Hong Kong University of Science and Technology (HKUST), Clear Water Bay, Kowloon (Hong Kong)

    2009-09-14

    The uptake kinetics and regulation of copper in a marine predatory fish, the black sea bream Acanthopagrus schlegeli after acclimation to waterborne Cu were examined, using radiotracer techniques. The dissolved Cu uptake followed a linear pattern during the time of exposure, and the calculated uptake rate constant was 6.24 L kg{sup -1} day{sup -1}. The efflux rate constant was 0.091 day{sup -1} following dietary uptake of Cu, and the dietary assimilation efficiency (AE) of Cu varied between 1.7% and 10.9% after the fish were fed with three types of prey (oysters, clams and brine shrimp). After the fish were acclimated at a nominal concentration of 50 {mu}g Cu L{sup -1} for 14 days, the Cu uptake rate and efflux rate constant did not change significantly, but the Cu body concentrations and metallothionein (MT) concentrations in fish tissues increased significantly. Subcellular Cu distributions were also modified. Significant MT induction was observed in response to increased Cu tissue concentrations, indicating that MT rather than the uptake kinetics may play a primary role in Cu regulation during waterborne Cu acclimation in this marine fish. Moreover, the high Cu efflux may also be important in Cu regulation during long-term exposure. Our modeling calculations indicated that dietary uptake was likely to be the main route for Cu bioaccumulation in the fish, and the relative contribution of waterborne and dietary uptake depended on the bioconcentration factor (BCF) of the prey and ingestion rate of fish.

  14. Trophic transfer of trace metals: Subcellular compartmentalization in a polychaete and assimilation by a decapod crustacean

    Science.gov (United States)

    Rainbow, P.S.; Poirier, L.; Smith, B.D.; Brix, K.V.; Luoma, S.N.

    2006-01-01

    The chemical form of accumulated trace metal in prey is important in controlling the bioavailataility of dietary metal to a predator. This study investigated the trophic transfer of radiolabelled Ag, Cd and Zn from the polychaete worm Nereis diversicolor to the decapod crustacean Palaemonetes varians. We used 2 populations of worms with different proportions of accumulated metals in different subcellular fractions as prey, and loaded the worms with radiolabelled metals either from sediment or from solution. Accumulated radiolabelled metals were fractionated into 5 components : metal-rich granules (MRG), cellular debris, organelles, metallothionein-like proteins (MTLP), and other (heat-sensitive) proteins (HSP). Assimilation efficiencies (AE) of the metals by P. varians were measured from the 4 categories of prey (i.e. 2 populations, radiolabelled from sediment or solution). There were significant differences for each metal between the AEs from the different prey categories, confirming that origin of prey and route of uptake of accumulated trace metal will cause intraspecific differences in subsequent metal assimilation. Correlations were sought between AEs and selected fractions or combinations of fractions of metals in the prey-MRG, Trophically Available Metal (TAM = MTLP + HSP + organelles) and total protein (MTLP + HSP). TAM explained 28% of the variance in AEs for Ag, but no consistent relationships emerged between AEs and TAM or total protein when the metals were considered separately. AEs did, however, show significant positive regressions with both TAM and total protein when the 3 metals were considered together, explaining only about 21 % of the variance in each case. A significant negative relationship was observed between MRG and AE for all metals combined. The predator (P. varians) can assimilate dietary metal from a range of the fractions binding metals in the prey (N. diversicolor), with different assimilation efficiencies summated across these

  15. Suppression of [sup 125]I-uptake in mouse thyroid by seaweed feeding; Possible preventative effect of dietary seaweed on internal radiation injury of the thyroid by radioactive iodine

    Energy Technology Data Exchange (ETDEWEB)

    Maruyama, Hiroko; Yamamoto, Ichiro (Kitasato Univ., Sagamihara, Kanagawa (Japan). School of Hygienic Sciences)

    1992-12-01

    We conducted an animal experiment to determine how dietary seaweeds rich in iodine and dietary fibers suppress radioactive iodine uptake by the thyroid, using mice and four kinds of experimental diets, three with 1% or 2% powdered fronds of the kelp Laminaria religiosa and 2% powdered laver Porphyra yezoensis, and one with cellulose. Iodine content of a hot-water extract of the kelp was 0.530[+-]0.001%, and its dietary fiber (DF) values were 52.8[+-]1.2%. Iodine in an extract of the laver was 0.008[+-]0.001%, and its DF values were 41.4%[+-]0.7%. A statistically significant reduction of [sup 125]I uptake by the thyroid, 3 hours after intragastric administration of the radionuclide at a dosage of 18.5 kBq or 185 kBq in 0.3 ml aqueous solution per mouse, was observed in mice previously fed the experimental diets containing 1% and 2% kelp during periods varying from 24 hours to 7 days. The degree of the suppression was observed to depend on the amount of iodine in the diet or in the injected sample, no matter whether organic or inorganic, judging from the results of an additional experiment. Thus, we conclude that previously fed iodine-rich material, especially dietary seaweeds rich in iodine and other minerals, vitamins, and [beta]-carotene, such as kelps or laver supplemented with inorganic iodine, may be effective in prevention of internal radiation injury of the thyroid. (author).

  16. Regional Ocean Data Assimilation

    KAUST Repository

    Edwards, Christopher A.; Moore, Andrew M.; Hoteit, Ibrahim; Cornuelle, Bruce D.

    2015-01-01

    This article reviews the past 15 years of developments in regional ocean data assimilation. A variety of scientific, management, and safety-related objectives motivate marine scientists to characterize many ocean environments, including coastal

  17. Land Surface Data Assimilation

    Science.gov (United States)

    Houser, P. R.

    2012-12-01

    Information about land surface water, energy and carbon conditions is of critical importance to real-world applications such as agricultural production, water resource management, flood prediction, water supply, weather and climate forecasting, and environmental preservation. While ground-based observational networks are improving, the only practical way to observe these land surface states on continental to global scales is via satellites. Remote sensing can make spatially comprehensive measurements of various components of the terrestrial system, but it cannot provide information on the entire system (e.g. evaporation), and the observations represent only an instant in time. Land surface process models may be used to predict temporal and spatial terrestrial dynamics, but these predictions are often poor, due to model initialization, parameter and forcing, and physics errors. Therefore, an attractive prospect is to combine the strengths of land surface models and observations (and minimize the weaknesses) to provide a superior terrestrial state estimate. This is the goal of land surface data assimilation. Data Assimilation combines observations into a dynamical model, using the model's equations to provide time continuity and coupling between the estimated fields. Land surface data assimilation aims to utilize both our land surface process knowledge, as embodied in a land surface model, and information that can be gained from observations. Both model predictions and observations are imperfect and we wish to use both synergistically to obtain a more accurate result. Moreover, both contain different kinds of information, that when used together, provide an accuracy level that cannot be obtained individually. Model biases can be mitigated using a complementary calibration and parameterization process. Limited point measurements are often used to calibrate the model(s) and validate the assimilation results. This presentation will provide a brief background on land

  18. Non-covalent interaction between dietary stilbenoids and human serum albumin: Structure-affinity relationship, and its influence on the stability, free radical scavenging activity and cell uptake of stilbenoids.

    Science.gov (United States)

    Cao, Hui; Jia, Xueping; Shi, Jian; Xiao, Jianbo; Chen, Xiaoqing

    2016-07-01

    Dietary stilbenoids are associated with many benefits for human health, which depend on their bioavailability and bioaccessibility. The stilbenoid-human serum albumin (HSA) interactions are investigated to explore the structure-affinity relationship and influence on the stability, free radical scavenging activity and cell uptake of stilbenoids. The structure-affinity relationship of the stilbenoids-HSA interaction was found as: (1) the methoxylation enhanced the affinity, (2) an additional hydroxyl group increases the affinity and (3) the glycosylation significantly weakened the affinity. HSA obviously masked the free radical scavenging potential of stilbenoids. The stabilities of stilbenoids in different medium were determined as: HSA solution>human plasma>Dulbecco's modified Eagle's medium. It appears that the milk enhanced the cell uptake of stilbenoids with multi-hydroxyl groups and weakened the cell uptake of stilbenoids with methoxyl group on EA.hy 926 endothelial cells. The stilbenoids are hardly absorbed by human umbilical vein endothelial cells in the presence of milk. Copyright © 2016 Elsevier Ltd. All rights reserved.

  19. Displacement data assimilation

    Energy Technology Data Exchange (ETDEWEB)

    Rosenthal, W. Steven [Pacific Northwest Laboratory, Richland, WA 99354 (United States); Venkataramani, Shankar [Department of Mathematics and Program in Applied Mathematics, University of Arizona, Tucson, AZ 85721 (United States); Mariano, Arthur J. [Rosenstiel School of Marine & Atmospheric Science, University of Miami, Miami, FL 33149 (United States); Restrepo, Juan M., E-mail: restrepo@math.oregonstate.edu [Department of Mathematics, Oregon State University, Corvallis, OR 97331 (United States)

    2017-02-01

    We show that modifying a Bayesian data assimilation scheme by incorporating kinematically-consistent displacement corrections produces a scheme that is demonstrably better at estimating partially observed state vectors in a setting where feature information is important. While the displacement transformation is generic, here we implement it within an ensemble Kalman Filter framework and demonstrate its effectiveness in tracking stochastically perturbed vortices.

  20. Determining metal assimilation efficiency in aquatic invertebrates using enriched stable metal isotope tracers

    International Nuclear Information System (INIS)

    Croteau, Marie-Noele; Luoma, Samuel N.; Pellet, Bastien

    2007-01-01

    We employ a novel approach that combines pulse-chase feeding and multi-labelled stable isotopes to determine gut passage time (GPT), gut retention time (GRT), food ingestion rate (IR) and assimilation efficiency (AE) of three trace elements for a freshwater gastropod. Lettuce isotopically enriched in 53 Cr, 65 Cu and 106 Cd was fed for 2 h to Lymnaea stagnalis. The release of tracers in feces and water was monitored for 48 h, during which unlabelled lettuce was provided ad libidum. The first defecation of 53 Cr occurred after 5 h of depuration (GPT), whereas 90% of the ingested 53 Cr was recovered in the feces after 22.5 h of depuration (GRT). 53 Chromium was not significantly accumulated in the soft tissues upon exposure. In contrast, 65 Cu and 106 Cd assimilation was detectable for most experimental snails, i.e., 65/63 Cu and 106/114 Cd ratios in exposed snails were higher than those for controls. Food IR during the labelled feeding phase was 0.16 ± 0.07 g g -1 d -1 . IR was inferred from the amount of 53 Cr egested in the feces during depuration and the concentration of 53 Cr in the labelled lettuce. Assimilation efficiencies (±95% CI) determined using mass balance calculations were 84 ± 4% for Cu and 85 ± 3% for Cd. The ratio method yields similar AE estimates. Expanding the application of this novel stable isotope tracer technique to other metals in a wide variety of species will provide unique opportunities to evaluate the interplay between digestive processes and dietary influx of metals. Understanding the biological processes that modulate dietborne metal uptake is crucial to assess the toxicity of dietborne metals

  1. Cholesterol Assimilation by Lactobacillus Probiotic Bacteria: An In Vitro Investigation

    Directory of Open Access Journals (Sweden)

    Catherine Tomaro-Duchesneau

    2014-01-01

    Full Text Available Excess cholesterol is associated with cardiovascular diseases (CVD, an important cause of mortality worldwide. Current CVD therapeutic measures, lifestyle and dietary interventions, and pharmaceutical agents for regulating cholesterol levels are inadequate. Probiotic bacteria have demonstrated potential to lower cholesterol levels by different mechanisms, including bile salt hydrolase activity, production of compounds that inhibit enzymes such as 3-hydroxy-3-methylglutaryl coenzyme A, and cholesterol assimilation. This work investigates 11 Lactobacillus strains for cholesterol assimilation. Probiotic strains for investigation were selected from the literature: Lactobacillus reuteri NCIMB 11951, L. reuteri NCIMB 701359, L. reuteri NCIMB 702655, L. reuteri NCIMB 701089, L. reuteri NCIMB 702656, Lactobacillus fermentum NCIMB 5221, L. fermentum NCIMB 8829, L. fermentum NCIMB 2797, Lactobacillus rhamnosus ATCC 53103 GG, Lactobacillus acidophilus ATCC 314, and Lactobacillus plantarum ATCC 14917. Cholesterol assimilation was investigated in culture media and under simulated intestinal conditions. The best cholesterol assimilator was L. plantarum ATCC 14917 (15.18 ± 0.55 mg/1010 cfu in MRS broth. L. reuteri NCIMB 701089 assimilated over 67% (2254.70 ± 63.33 mg/1010 cfu of cholesterol, the most of all the strains, under intestinal conditions. This work demonstrates that probiotic bacteria can assimilate cholesterol under intestinal conditions, with L. reuteri NCIMB 701089 showing great potential as a CVD therapeutic.

  2. Monitoring urinary mercapturic acids as biomarkers of human dietary exposure to acrylamide in combination with acrylamide uptake assessment based on duplicate diets.

    Science.gov (United States)

    Ruenz, Meike; Bakuradze, Tamara; Eisenbrand, Gerhard; Richling, Elke

    2016-04-01

    The present human intervention study investigated the relation between the intake of acrylamide (AA) in diets with minimized, low, and high AA contents and the levels of urinary exposure biomarkers. As biomarkers, the mercapturic acids, N-acetyl-S-(carbamoylethyl)-L-cysteine (AAMA), and N-acetyl-S-(1-carbamoyl-2-hydroxyethyl)-L-cysteine (GAMA) were monitored. The study was performed with 14 healthy male volunteers over a period of 9 days, under controlled conditions excluding any inadvertent AA exposure. Dietary exposure to AA was measured by determining AA contents in duplicates of all meals consumed by the volunteers. The study design included an initial washout period of 3 days on AA-minimized diet, resulting in dietary AA exposure not exceeding 41 ng/kg bw/d. Identical washout periods of 2 days each followed the AA exposure days (day 4, low exposure, and day 7, high exposure). At the respective AA intake days, volunteers ingested 0.6-0.8 (low exposure) or 1.3-1.8 (high exposure) μg AA/kg bw/d with their food. Both low and high AA intakes resulted in an AAMA output within 72 h corresponding to 58 % of the respective AA intake. At the end of the initial 3-day washout period, an AAMA baseline level of 93 ± 31 nmol/d was recorded, suggestive for an assumed net AA baseline exposure level of 0.2-0.3 μg AA/kg bw/d.

  3. An ATP Binding Cassette Transporter Mediates the Uptake of α-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates

    DEFF Research Database (Denmark)

    Hansen, Morten Ejby; Fredslund, Folmer; Andersen, Joakim Mark

    2016-01-01

    that the dominant HGM commensal Bacteroides ovatus was out-competed by B. animalis subsp. lactis Bl-04 in mixed cultures growing on raffinose, the preferred ligand for the BlG16BP. By comparison, B. ovatus mono-cultures grew very efficiently on this trisaccharide. These findings suggest that the ABC-mediated uptake...... of raffinose provides an important competitive advantage, particularly against dominant Bacteroides that lack glycan-specific ABC-transporters. This novel insight highlights the role of glycan transport in defining the metabolic specialization of gut bacteria....

  4. Spatial Assimilation in Denmark?

    DEFF Research Database (Denmark)

    Andersen, Hans Skifter

    2010-01-01

    market and discrimination, which limits the housing possibilities for ethnic minorities. Another explanation could be that immigrants for different reasons choose to settle in so-called ethnic enclaves where they can find an ethnic social network, which can support them in their new country....... In traditional research literature about immigration it has been shown that for many immigrants living in enclaves has been a temporary situation. The 'spatial assimilation theory' says that this situation ends when the family has become more integrated in the new society and then moves to other parts...

  5. Regional Ocean Data Assimilation

    KAUST Repository

    Edwards, Christopher A.

    2015-01-03

    This article reviews the past 15 years of developments in regional ocean data assimilation. A variety of scientific, management, and safety-related objectives motivate marine scientists to characterize many ocean environments, including coastal regions. As in weather prediction, the accurate representation of physical, chemical, and/or biological properties in the ocean is challenging. Models and observations alone provide imperfect representations of the ocean state, but together they can offer improved estimates. Variational and sequential methods are among the most widely used in regional ocean systems, and there have been exciting recent advances in ensemble and four-dimensional variational approaches. These techniques are increasingly being tested and adapted for biogeochemical applications.

  6. Exposure to an enriched CO2 atmosphere alters carbon assimilation and allocation in a pine forest ecosystem

    Science.gov (United States)

    Karina V.R. Schafer; Ram Oren; David S. Ellsworth; Chun-Ta Lai; Jeffrey D. Herricks; Adrien C. Finzi; Daniel D. Richter; Gabriel G. Katul

    2003-01-01

    We linked a leaf-level C02 assimilation model with a model that accounts for light attenuation in the canopy and measurements of sap-flux-based canopy conductance into a new canopy conductance-constrained carbon assimilation (4C-A) model. We estimated canopy C02 uptake (AnC) at...

  7. Nonlinear data assimilation

    CERN Document Server

    Van Leeuwen, Peter Jan; Reich, Sebastian

    2015-01-01

    This book contains two review articles on nonlinear data assimilation that deal with closely related topics but were written and can be read independently. Both contributions focus on so-called particle filters. The first contribution by Jan van Leeuwen focuses on the potential of proposal densities. It discusses the issues with present-day particle filters and explorers new ideas for proposal densities to solve them, converging to particle filters that work well in systems of any dimension, closing the contribution with a high-dimensional example. The second contribution by Cheng and Reich discusses a unified framework for ensemble-transform particle filters. This allows one to bridge successful ensemble Kalman filters with fully nonlinear particle filters, and allows a proper introduction of localization in particle filters, which has been lacking up to now.

  8. Global Data Assimilation System (GDAS)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Global Data Assimilation System (GDAS) is the system used by the Global Forecast System (GFS) model to place observations into a gridded model space for the...

  9. Data assimilation in hydrological modelling

    DEFF Research Database (Denmark)

    Drecourt, Jean-Philippe

    Data assimilation is an invaluable tool in hydrological modelling as it allows to efficiently combine scarce data with a numerical model to obtain improved model predictions. In addition, data assimilation also provides an uncertainty analysis of the predictions made by the hydrological model....... In this thesis, the Kalman filter is used for data assimilation with a focus on groundwater modelling. However the developed techniques are general and can be applied also in other modelling domains. Modelling involves conceptualization of the processes of Nature. Data assimilation provides a way to deal...... with model non-linearities and biased errors. A literature review analyzes the most popular techniques and their application in hydrological modelling. Since bias is an important problem in groundwater modelling, two bias aware Kalman filters have been implemented and compared using an artificial test case...

  10. Data Assimilation in Marine Models

    DEFF Research Database (Denmark)

    Frydendall, Jan

    maximum likelihood framework. These issues are discussed in paper B. The third part of the thesis falls a bit out of the above context is work published in papers C, F. In the first paper, a simple data assimilation scheme was investigated to examine the potential benefits of incorporating a data......This thesis consists of six research papers published or submitted for publication in the period 2006-2009 together with a summary report. The main topics of this thesis are nonlinear data assimilation techniques and estimation in dynamical models. The focus has been on the nonlinear filtering...... techniques for large scale geophysical numerical models and making them feasible to work with in the data assimilation framework. The filtering techniques investigated are all Monte Carlo simulation based. Some very nice features that can be exploited in the Monte Carlo based data assimilation framework from...

  11. Investigation on the Assimilation of Nitrogen by Maize Roots and the Transport of Some Major Nitrogen Compounds by Xylem Sap

    DEFF Research Database (Denmark)

    Ivanko, S.; Ingversen, J.

    1971-01-01

    The uptake and assimilation of nitrate and ammonia have been studied in Zea mays. Nitrogen-starved maize roots are capable of accumulating a potential capacity for nitrogen uptake and assimilation. Reestablishment of nitrogen supply leads to intense uptake, reaching 154 % of the reference variant...... level after 24 hours when nitrate is supplied, and 121 % when ammonia is supplied. After 24 hours the insoluble nitrogen fraction accounts for 80, 54 and 55 % of the total taken up in the PK + NO3-, PK + NH4+ and NPK variants respectively....

  12. Effective Assimilation of Global Precipitation

    Science.gov (United States)

    Lien, G.; Kalnay, E.; Miyoshi, T.; Huffman, G. J.

    2012-12-01

    Assimilating precipitation observations by modifying the moisture and sometimes temperature profiles has been shown successful in forcing the model precipitation to be close to the observed precipitation, but only while the assimilation is taking place. After the forecast start, the model tends to "forget" the assimilation changes and lose their extra skill after few forecast hours. This suggests that this approach is not an efficient way to modify the potential vorticity field, since this is the variable that the model would remember. In this study, the ensemble Kalman filter (EnKF) method is used to effectively change the potential vorticity field by allowing ensemble members with better precipitation to receive higher weights. In addition to using an EnKF, two other changes in the precipitation assimilation process are proposed to solve the problems related to the highly non-Gaussian nature of the precipitation variable: a) transform precipitation into a Gaussian distribution based on its climatological distribution, and b) only assimilate precipitation at the location where some ensemble members have positive precipitation. The idea is first tested by the observing system simulation experiments (OSSEs) using SPEEDY, a simplified but realistic general circulation model. When the global precipitation is assimilated in addition to conventional rawinsonde observations, both the analyses and the medium range forecasts are significantly improved as compared to only having rawinsonde observations. The improvement is much reduced when only modifying the moisture field with the same approach, which shows the importance of the error covariance between precipitation and all other model variables. The effect of precipitation assimilation is larger in the Southern Hemisphere than that in the Northern Hemisphere because the Northern Hemisphere analyses are already accurate as a result of denser rawinsonde stations. Assimilation of precipitation using a more comprehensive

  13. Modulation of intestinal sulfur assimilation metabolism regulates iron homeostasis

    Science.gov (United States)

    Hudson, Benjamin H.; Hale, Andrew T.; Irving, Ryan P.; Li, Shenglan; York, John D.

    2018-01-01

    Sulfur assimilation is an evolutionarily conserved pathway that plays an essential role in cellular and metabolic processes, including sulfation, amino acid biosynthesis, and organismal development. We report that loss of a key enzymatic component of the pathway, bisphosphate 3′-nucleotidase (Bpnt1), in mice, both whole animal and intestine-specific, leads to iron-deficiency anemia. Analysis of mutant enterocytes demonstrates that modulation of their substrate 3′-phosphoadenosine 5′-phosphate (PAP) influences levels of key iron homeostasis factors involved in dietary iron reduction, import and transport, that in part mimic those reported for the loss of hypoxic-induced transcription factor, HIF-2α. Our studies define a genetic basis for iron-deficiency anemia, a molecular approach for rescuing loss of nucleotidase function, and an unanticipated link between nucleotide hydrolysis in the sulfur assimilation pathway and iron homeostasis. PMID:29507250

  14. Data Assimilation for Applied Meteorology

    Science.gov (United States)

    Haupt, S. E.

    2012-12-01

    Although atmospheric models provide a best estimate of the future state of the atmosphere, due to sensitivity to initial condition, it is difficult to predict the precise future state. For applied problems, however, users often depend on having accurate knowledge of that future state. To improve prediction of a particular realization of an evolving flow field requires knowledge of the current state of that field and assimilation of local observations into the model. This talk will consider how dynamic assimilation can help address the concerns of users of atmospheric forecasts. First, we will look at the value of assimilation for the renewable energy industry. If the industry decision makers can have confidence in the wind and solar power forecasts, they can build their power allocations around the expected renewable resource, saving money for the ratepayers as well as reducing carbon emissions. We will assess the value to that industry of assimilating local real-time observations into the model forecasts and the value that is provided. The value of the forecasts with assimilation is important on both short (several hour) to medium range (within two days). A second application will be atmospheric transport and dispersion problems. In particular, we will look at assimilation of concentration data into a prediction model. An interesting aspect of this problem is that the dynamics are a one-way coupled system, with the fluid dynamic equations affecting the concentration equation, but not vice versa. So when the observations are of the concentration, one must infer the fluid dynamics. This one-way coupled system presents a challenge: one must first infer the changes in the flow field from observations of the contaminant, then assimilate that to recover both the advecting flow and information on the subgrid processes that provide the mixing. To accomplish such assimilation requires a robust method to match the observed contaminant field to that modeled. One approach is

  15. Assimilation of diazotrophic nitrogen into pelagic food webs.

    Directory of Open Access Journals (Sweden)

    Ryan J Woodland

    Full Text Available The fate of diazotrophic nitrogen (N(D fixed by planktonic cyanobacteria in pelagic food webs remains unresolved, particularly for toxic cyanophytes that are selectively avoided by most herbivorous zooplankton. Current theory suggests that N(D fixed during cyanobacterial blooms can enter planktonic food webs contemporaneously with peak bloom biomass via direct grazing of zooplankton on cyanobacteria or via the uptake of bioavailable N(D (exuded from viable cyanobacterial cells by palatable phytoplankton or microbial consortia. Alternatively, N(D can enter planktonic food webs post-bloom following the remineralization of bloom detritus. Although the relative contribution of these processes to planktonic nutrient cycles is unknown, we hypothesized that assimilation of bioavailable N(D (e.g., nitrate, ammonium by palatable phytoplankton and subsequent grazing by zooplankton (either during or after the cyanobacterial bloom would be the primary pathway by which N(D was incorporated into the planktonic food web. Instead, in situ stable isotope measurements and grazing experiments clearly documented that the assimilation of N(D by zooplankton outpaced assimilation by palatable phytoplankton during a bloom of toxic Nodularia spumigena Mertens. We identified two distinct temporal phases in the trophic transfer of N(D from N. spumigena to the plankton community. The first phase was a highly dynamic transfer of N(D to zooplankton with rates that covaried with bloom biomass while bypassing other phytoplankton taxa; a trophic transfer that we infer was routed through bloom-associated bacteria. The second phase was a slowly accelerating assimilation of the dissolved-N(D pool by phytoplankton that was decoupled from contemporaneous variability in N. spumigena concentrations. These findings provide empirical evidence that N(D can be assimilated and transferred rapidly throughout natural plankton communities and yield insights into the specific processes

  16. Assimilation of diazotrophic nitrogen into pelagic food webs.

    Science.gov (United States)

    Woodland, Ryan J; Holland, Daryl P; Beardall, John; Smith, Jonathan; Scicluna, Todd; Cook, Perran L M

    2013-01-01

    The fate of diazotrophic nitrogen (N(D)) fixed by planktonic cyanobacteria in pelagic food webs remains unresolved, particularly for toxic cyanophytes that are selectively avoided by most herbivorous zooplankton. Current theory suggests that N(D) fixed during cyanobacterial blooms can enter planktonic food webs contemporaneously with peak bloom biomass via direct grazing of zooplankton on cyanobacteria or via the uptake of bioavailable N(D) (exuded from viable cyanobacterial cells) by palatable phytoplankton or microbial consortia. Alternatively, N(D) can enter planktonic food webs post-bloom following the remineralization of bloom detritus. Although the relative contribution of these processes to planktonic nutrient cycles is unknown, we hypothesized that assimilation of bioavailable N(D) (e.g., nitrate, ammonium) by palatable phytoplankton and subsequent grazing by zooplankton (either during or after the cyanobacterial bloom) would be the primary pathway by which N(D) was incorporated into the planktonic food web. Instead, in situ stable isotope measurements and grazing experiments clearly documented that the assimilation of N(D) by zooplankton outpaced assimilation by palatable phytoplankton during a bloom of toxic Nodularia spumigena Mertens. We identified two distinct temporal phases in the trophic transfer of N(D) from N. spumigena to the plankton community. The first phase was a highly dynamic transfer of N(D) to zooplankton with rates that covaried with bloom biomass while bypassing other phytoplankton taxa; a trophic transfer that we infer was routed through bloom-associated bacteria. The second phase was a slowly accelerating assimilation of the dissolved-N(D) pool by phytoplankton that was decoupled from contemporaneous variability in N. spumigena concentrations. These findings provide empirical evidence that N(D) can be assimilated and transferred rapidly throughout natural plankton communities and yield insights into the specific processes underlying

  17. Silver bioaccumulation dynamics in a freshwater invertebrate after aqueous and dietary exposures to nanosized and ionic Ag

    Science.gov (United States)

    le Croteau, Marie-Noe; Misra, Superb K.; Luoma, Samuel N.; Valsami-Jones, Eugenia

    2011-01-01

    We compared silver (Ag) bioavailability and toxicity to a freshwater gastropod after exposure to ionic silver (Ag+) and to Ag nanoparticles (Ag NPs) capped with citrate or with humic acid. Silver form, exposure route, and capping agent influence Ag bioaccumulation dynamics in Lymnaea stagnalis. Snails efficiently accumulated Ag from all forms after either aqueous or dietary exposure. For both exposure routes, uptake rates were faster for Ag+ than for Ag NPs. Snails efficiently assimilated Ag from Ag NPs mixed with diatoms (assimilation efficiency (AE) ranged from 49 to 58%) and from diatoms pre-exposed to Ag+ (AE of 73%). In the diet, Ag NPs damaged digestion. Snails ate less and inefficiently processed the ingested food, which adversely impacted their growth. Loss rates of Ag were faster after waterborne exposure to Ag NPs than after exposure to dissolved Ag+. Once Ag was taken up from diet, whether from Ag+ or Ag NPs, Ag was lost extremely slowly. Large Ag body concentrations are thus expected in L. stagnalis after dietborne exposures, especially to citrate-capped Ag NPs. Ingestion of Ag associated with particulate materials appears as the most important vector of uptake. Nanosilver exposure from food might trigger important environmental risks.

  18. Effects of NO3(-) and NH4(+) and urea on each other's uptake and incorporation

    Science.gov (United States)

    Huffaker, R. C.; Ward, M. R.

    1986-01-01

    The purpose was to determine the optimal use by wheat plants of the N sources expected from processing biological waste products, NO3(-),NO2(-)NH4(+), and urea. The approach was to determine the uptake and metabolic products of each N source (from single and multiple component solutions), inhibitory effects of each, feedback inhibition, and overall in vivo regulation of the rates of assimilation of each by wheat plants. Previously, researchers determined the interactions of NO3(-),NO2(-),NH4(+) on each other's uptake and incorporation. The assimilation and some of its effects on NO3(-) and NH4(+) assimilation which have been completed to data are discussed.

  19. Sudden increase in atmospheric concentration reveals strong coupling between shoot carbon uptake and root nutrient uptake in young walnut trees

    International Nuclear Information System (INIS)

    Delaire, M.; Sigogne, M.; Beaujard, F.; Frak, E.; Adam, B.; Le Roux, X.

    2005-01-01

    Short-term effects of a sudden increase in carbon dioxide concentration on nutrient uptake by roots during vegetative growth was studied in young walnut trees. Rates of carbon dioxide uptake and water loss by individual trees were determined by a branch bag method from three days before and six days after carbon dioxide concentration was increased. Nutrient uptake rates were measured concurrently by a hydroponic recirculating nutrient solution system. Carbon dioxide uptake rates increased greatly with increasing atmospheric carbon dioxide; nutrient uptake rates were proportional to carbon dioxide uptake rates, except for the phosphorus ion. Daily water loss rates were only slightly affected by elevated carbon dioxide. Overall, it was concluded that in the presence of non-limiting supplies of water and nutrients, root nutrient uptake and shoot carbon assimilation are strongly coupled in the short term in young walnut trees despite the important carbon and nutrient storage capacities od woody species. 45 refs., 7 figs

  20. Assimilate partitioning during reproductive growth

    International Nuclear Information System (INIS)

    Finazzo, S.F.; Davenport, T.L.

    1987-01-01

    Leaves having various phyllotactic relationships to fruitlets were labeled for 1 hour with 10/sub r/Ci of 14 CO 2 . Fruitlets were also labeled. Fruitlets did fix 14 CO 2 . Translocation of radioactivity from the peel into the fruit occurred slowly and to a limited extent. No evidence of translocation out of the fruitlets was observed. Assimilate partitioning in avocado was strongly influenced by phyllotaxy. If a fruit and the labeled leaf had the same phyllotaxy then greater than 95% of the radiolabel was present in this fruit. When the fruit did not have the same phyllotaxy as the labeled leaf, the radiolabel distribution was skewed with 70% of the label going to a single adjacent position. Avocado fruitlets exhibit uniform labeling throughout a particular tissue. In avocado, assimilates preferentially move from leaves to fruits with the same phyllotaxy

  1. Effects of entrainment through Oconee Nuclear Station on carbon-14 assimilation rates of phytoplankton

    International Nuclear Information System (INIS)

    Kreh, T.V.; Derwort, J.E.

    1976-01-01

    Carbon assimilation rates of phytoplankton communities entrained through Oconee Nuclear Station were measured on six dates during 1974. Thermal, mechanical, condenser, and multiple entrainment effects on uptake rates were compared by incubating samples in vitro in controlled-temperature water baths. Duplicate light and dark bottles containing water from four cooling-system locations were exposed to temperatures approximating intake and discharge temperatures. The relationships were variable, but exposure of the hypolimnetic intake water at near-discharge temperatures (thermal effect) stimulated primary productivity in four of six experiments. Multiple entrainment and mechanical effects caused no consistent change in assimilation rates

  2. The water-water cycle in leaves is not a major alternative electron sink for dissipation of excess excitation energy when CO2 assimilation is restricted

    NARCIS (Netherlands)

    Driever, S.M.; Baker, N.R.

    2011-01-01

    Electron flux from water via photosystem II (PSII) and PSI to oxygen (water–water cycle) may provide a mechanism for dissipation of excess excitation energy in leaves when CO2 assimilation is restricted. Mass spectrometry was used to measure O2 uptake and evolution together with CO2 uptake in leaves

  3. Conditions for successful data assimilation

    Science.gov (United States)

    Morzfeld, M.; Chorin, A. J.

    2013-12-01

    Many applications in science and engineering require that the predictions of uncertain models be updated by information from a stream of noisy data. The model and the data jointly define a conditional probability density function (pdf), which contains all the information one has about the process of interest and various numerical methods can be used to study and approximate this pdf, e.g. the Kalman filter, variational methods or particle filters. Given a model and data, each of these algorithms will produce a result. We are interested in the conditions under which this result is reasonable, i.e. consistent with the real-life situation one is modeling. In particular, we show, using idealized models, that numerical data assimilation is feasible in principle only if a suitably defined effective dimension of the problem is not excessive. This effective dimension depends on the noise in the model and the data, and in physically reasonable problems it can be moderate even when the number of variables is huge. In particular, we find that the effective dimension being moderate induces a balance condition between the noises in the model and the data; this balance condition is often satisfied in realistic applications or else the noise levels are excessive and drown the underlying signal. We also study the effects of the effective dimension on particle filters in two instances, one in which the importance function is based on the model alone, and one in which it is based on both the model and the data. We have three main conclusions: (1) the stability (i.e., non-collapse of weights) in particle filtering depends on the effective dimension of the problem. Particle filters can work well if the effective dimension is moderate even if the true dimension is large (which we expect to happen often in practice). (2) A suitable choice of importance function is essential, or else particle filtering fails even when data assimilation is feasible in principle with a sequential algorithm

  4. Data Assimilation - Advances and Applications

    Energy Technology Data Exchange (ETDEWEB)

    Williams, Brian J. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2014-07-30

    This presentation provides an overview of data assimilation (model calibration) for complex computer experiments. Calibration refers to the process of probabilistically constraining uncertain physics/engineering model inputs to be consistent with observed experimental data. An initial probability distribution for these parameters is updated using the experimental information. Utilization of surrogate models and empirical adjustment for model form error in code calibration form the basis for the statistical methodology considered. The role of probabilistic code calibration in supporting code validation is discussed. Incorporation of model form uncertainty in rigorous uncertainty quantification (UQ) analyses is also addressed. Design criteria used within a batch sequential design algorithm are introduced for efficiently achieving predictive maturity and improved code calibration. Predictive maturity refers to obtaining stable predictive inference with calibrated computer codes. These approaches allow for augmentation of initial experiment designs for collecting new physical data. A standard framework for data assimilation is presented and techniques for updating the posterior distribution of the state variables based on particle filtering and the ensemble Kalman filter are introduced.

  5. Data assimilation with inequality constraints

    Science.gov (United States)

    Thacker, W. C.

    If values of variables in a numerical model are limited to specified ranges, these restrictions should be enforced when data are assimilated. The simplest option is to assimilate without regard for constraints and then to correct any violations without worrying about additional corrections implied by correlated errors. This paper addresses the incorporation of inequality constraints into the standard variational framework of optimal interpolation with emphasis on our limited knowledge of the underlying probability distributions. Simple examples involving only two or three variables are used to illustrate graphically how active constraints can be treated as error-free data when background errors obey a truncated multi-normal distribution. Using Lagrange multipliers, the formalism is expanded to encompass the active constraints. Two algorithms are presented, both relying on a solution ignoring the inequality constraints to discover violations to be enforced. While explicitly enforcing a subset can, via correlations, correct the others, pragmatism based on our poor knowledge of the underlying probability distributions suggests the expedient of enforcing them all explicitly to avoid the computationally expensive task of determining the minimum active set. If additional violations are encountered with these solutions, the process can be repeated. Simple examples are used to illustrate the algorithms and to examine the nature of the corrections implied by correlated errors.

  6. Assimilation of ocean colour to improve the simulation and understanding of the North West European shelf-sea ecosystem

    Science.gov (United States)

    Ciavatta, Stefano; Brewin, Robert; Skakala, Jozef; Sursham, David; Ford, David

    2017-04-01

    Shelf-seas and coastal zones provide essential goods and services to humankind, such as fisheries, aquaculture, tourism and climate regulation. The understanding and management of these regions can be enhanced by merging ocean-colour observations and marine ecosystem simulations through data assimilation, which provides (sub)optimal estimates of key biogeochemical variables. Here we present a range of applications of ocean-colour data assimilation in the North West European shelf-sea. A reanalysis application illustrates that assimilation of error-characterized chlorophyll concentrations could provide a map of the shelf sea vulnerability to oxygen deficiency, as well as estimates of the shelf sea uptake of atmospheric carbon dioxide (CO2) in the last decade. The interannual variability of CO2 uptake and its uncertainty were related significantly to interannual fluctuations of the simulated primary production. However, the reanalysis also indicates that assimilation of total chlorophyll did not improve significantly the simulation of some other variables, e.g. nutrients. We show that the assimilation of alternative products derived from ocean colour (i.e. spectral diffuse attenuation coefficient and phytoplankton size classes) can overcome this limitation. In fact, these products can constrain a larger number of model variables, which define either the underwater light field or the structure of the lower trophic levels. Therefore, the assimilation of such ocean-colour products into marine ecosystem models is an advantageous novel approach to improve the understanding and simulation of shelf-sea environments.

  7. Most Colorful Example of Genetic Assimilation? Exploring the Evolutionary Destiny of Recurrent Phenotypic Accommodation.

    Science.gov (United States)

    Badyaev, Alexander V; Potticary, Ahva L; Morrison, Erin S

    2017-08-01

    Evolution of adaptation requires both generation of novel phenotypic variation and retention of a locally beneficial subset of this variation. Such retention can be facilitated by genetic assimilation, the accumulation of genetic and molecular mechanisms that stabilize induced phenotypes and assume progressively greater control over their reliable production. A particularly strong inference into genetic assimilation as an evolutionary process requires a system where it is possible to directly evaluate the extent to which an induced phenotype is progressively incorporated into preexisting developmental pathways. Evolution of diet-dependent pigmentation in birds-where external carotenoids are coopted into internal metabolism to a variable degree before being integrated with a feather's developmental processes-provides such an opportunity. Here we combine a metabolic network view of carotenoid evolution with detailed empirical study of feather modifications to show that the effect of physical properties of carotenoids on feather structure depends on their metabolic modification, their environmental recurrence, and biochemical redundancy, as predicted by the genetic assimilation hypothesis. Metabolized carotenoids caused less stochastic variation in feather structure and were more closely integrated with feather growth than were dietary carotenoids of the same molecular weight. These patterns were driven by the recurrence of organism-carotenoid associations: commonly used dietary carotenoids and biochemically redundant derived carotenoids caused less stochastic variation in feather structure than did rarely used or biochemically unique compounds. We discuss implications of genetic assimilation processes for the evolutionary diversification of diet-dependent animal coloration.

  8. Covariance Function for Nearshore Wave Assimilation Systems

    Science.gov (United States)

    2018-01-30

    which is applicable for any spectral wave model. The four dimensional variational (4DVar) assimilation methods are based on the mathematical ...covariance can be modeled by a parameterized Gaussian function, for nearshore wave assimilation applications , the covariance function depends primarily on...SPECTRAL ACTION DENSITY, RESPECTIVELY. ............................ 5 FIGURE 2. TOP ROW: STATISTICAL ANALYSIS OF THE WAVE-FIELD PROPERTIES AT THE

  9. Data assimilation a mathematical introduction

    CERN Document Server

    Law, Kody; Zygalakis, Konstantinos

    2015-01-01

    This book provides a systematic treatment of the mathematical underpinnings of work in data assimilation, covering both theoretical and computational approaches. Specifically the authors develop a unified mathematical framework in which a Bayesian formulation of the problem provides the bedrock for the derivation, development and analysis of algorithms; the many examples used in the text, together with the algorithms which are introduced and discussed, are all illustrated by the MATLAB software detailed in the book and made freely available online. The book is organized into nine chapters: the first contains a brief introduction to the mathematical tools around which the material is organized; the next four are concerned with discrete time dynamical systems and discrete time data; the last four are concerned with continuous time dynamical systems and continuous time data and are organized analogously to the corresponding discrete time chapters. This book is aimed at mathematical researchers interested in a sy...

  10. Effective assimilation of global precipitation: simulation experiments

    Directory of Open Access Journals (Sweden)

    Guo-Yuan Lien

    2013-07-01

    Full Text Available Past attempts to assimilate precipitation by nudging or variational methods have succeeded in forcing the model precipitation to be close to the observed values. However, the model forecasts tend to lose their additional skill after a few forecast hours. In this study, a local ensemble transform Kalman filter (LETKF is used to effectively assimilate precipitation by allowing ensemble members with better precipitation to receive higher weights in the analysis. In addition, two other changes in the precipitation assimilation process are found to alleviate the problems related to the non-Gaussianity of the precipitation variable: (a transform the precipitation variable into a Gaussian distribution based on its climatological distribution (an approach that could also be used in the assimilation of other non-Gaussian observations and (b only assimilate precipitation at the location where at least some ensemble members have precipitation. Unlike many current approaches, both positive and zero rain observations are assimilated effectively. Observing system simulation experiments (OSSEs are conducted using the Simplified Parametrisations, primitivE-Equation DYnamics (SPEEDY model, a simplified but realistic general circulation model. When uniformly and globally distributed observations of precipitation are assimilated in addition to rawinsonde observations, both the analyses and the medium-range forecasts of all model variables, including precipitation, are significantly improved as compared to only assimilating rawinsonde observations. The effect of precipitation assimilation on the analyses is retained on the medium-range forecasts and is larger in the Southern Hemisphere (SH than that in the Northern Hemisphere (NH because the NH analyses are already made more accurate by the denser rawinsonde stations. These improvements are much reduced when only the moisture field is modified by the precipitation observations. Both the Gaussian transformation and

  11. Assimilation of Ocean-Color Plankton Functional Types to Improve Marine Ecosystem Simulations

    Science.gov (United States)

    Ciavatta, S.; Brewin, R. J. W.; Skákala, J.; Polimene, L.; de Mora, L.; Artioli, Y.; Allen, J. I.

    2018-02-01

    We assimilated phytoplankton functional types (PFTs) derived from ocean color into a marine ecosystem model, to improve the simulation of biogeochemical indicators and emerging properties in a shelf sea. Error-characterized chlorophyll concentrations of four PFTs (diatoms, dinoflagellates, nanoplankton, and picoplankton), as well as total chlorophyll for comparison, were assimilated into a physical-biogeochemical model of the North East Atlantic, applying a localized Ensemble Kalman filter. The reanalysis simulations spanned the years 1998-2003. The skill of the reference and reanalysis simulations in estimating ocean color and in situ biogeochemical data were compared by using robust statistics. The reanalysis outperformed both the reference and the assimilation of total chlorophyll in estimating the ocean-color PFTs (except nanoplankton), as well as the not-assimilated total chlorophyll, leading the model to simulate better the plankton community structure. Crucially, the reanalysis improved the estimates of not-assimilated in situ data of PFTs, as well as of phosphate and pCO2, impacting the simulation of the air-sea carbon flux. However, the reanalysis increased further the model overestimation of nitrate, in spite of increases in plankton nitrate uptake. The method proposed here is easily adaptable for use with other ecosystem models that simulate PFTs, for, e.g., reanalysis of carbon fluxes in the global ocean and for operational forecasts of biogeochemical indicators in shelf-sea ecosystems.

  12. Skill Assessment in Ocean Biological Data Assimilation

    Science.gov (United States)

    Gregg, Watson W.; Friedrichs, Marjorie A. M.; Robinson, Allan R.; Rose, Kenneth A.; Schlitzer, Reiner; Thompson, Keith R.; Doney, Scott C.

    2008-01-01

    There is growing recognition that rigorous skill assessment is required to understand the ability of ocean biological models to represent ocean processes and distributions. Statistical analysis of model results with observations represents the most quantitative form of skill assessment, and this principle serves as well for data assimilation models. However, skill assessment for data assimilation requires special consideration. This is because there are three sets of information in the free-run model, data, and the assimilation model, which uses Data assimilation information from both the flee-run model and the data. Intercom parison of results among the three sets of information is important and useful for assessment, but is not conclusive since the three information sets are intertwined. An independent data set is necessary for an objective determination. Other useful measures of ocean biological data assimilation assessment include responses of unassimilated variables to the data assimilation, performance outside the prescribed region/time of interest, forecasting, and trend analysis. Examples of each approach from the literature are provided. A comprehensive list of ocean biological data assimilation and their applications of skill assessment, in both ecosystem/biogeochemical and fisheries efforts, is summarized.

  13. Methodological Developments in Geophysical Assimilation Modeling

    Science.gov (United States)

    Christakos, George

    2005-06-01

    This work presents recent methodological developments in geophysical assimilation research. We revisit the meaning of the term "solution" of a mathematical model representing a geophysical system, and we examine its operational formulations. We argue that an assimilation solution based on epistemic cognition (which assumes that the model describes incomplete knowledge about nature and focuses on conceptual mechanisms of scientific thinking) could lead to more realistic representations of the geophysical situation than a conventional ontologic assimilation solution (which assumes that the model describes nature as is and focuses on form manipulations). Conceptually, the two approaches are fundamentally different. Unlike the reasoning structure of conventional assimilation modeling that is based mainly on ad hoc technical schemes, the epistemic cognition approach is based on teleologic criteria and stochastic adaptation principles. In this way some key ideas are introduced that could open new areas of geophysical assimilation to detailed understanding in an integrated manner. A knowledge synthesis framework can provide the rational means for assimilating a variety of knowledge bases (general and site specific) that are relevant to the geophysical system of interest. Epistemic cognition-based assimilation techniques can produce a realistic representation of the geophysical system, provide a rigorous assessment of the uncertainty sources, and generate informative predictions across space-time. The mathematics of epistemic assimilation involves a powerful and versatile spatiotemporal random field theory that imposes no restriction on the shape of the probability distributions or the form of the predictors (non-Gaussian distributions, multiple-point statistics, and nonlinear models are automatically incorporated) and accounts rigorously for the uncertainty features of the geophysical system. In the epistemic cognition context the assimilation concept may be used to

  14. Relationship between nitrate reductase and nitrate uptake in phytoplankton in the Peru upwelling region

    International Nuclear Information System (INIS)

    Blasco, D.; MacIsaac, J.J.; Packard, T.T.; Dugdale, R.C.

    1984-01-01

    Nitrate reductase (NR) activity and 15 NO 3 - uptake in phytoplankton were compared under different environmental conditions on two cruises in the upwelling region off Peru. The NR activity and NO 3 - uptake rates responded differently to light and nutrients and the differences led to variations in the uptake: reductase ratio. Analysis of these variations suggests that the re-equilibration time of the two processes in response to environmental perturbation is an important source of variability. The nitrate uptake system responds faster than the nitrate reductase system. Considering these differences in response time the basic differences in the two processes, and the differences in their measurement, the authors conclude that the Nr activity measures the current nitrate-reducing potential, which reflects NO 3 - assimilation before the sampling time, while 15 NO 3 - uptake measures NO 3 - assimilation in the 6-h period following sampling

  15. Data Assimilation with Optimal Maps

    Science.gov (United States)

    El Moselhy, T.; Marzouk, Y.

    2012-12-01

    Tarek El Moselhy and Youssef Marzouk Massachusetts Institute of Technology We present a new approach to Bayesian inference that entirely avoids Markov chain simulation and sequential importance resampling, by constructing a map that pushes forward the prior measure to the posterior measure. Existence and uniqueness of a suitable measure-preserving map is established by formulating the problem in the context of optimal transport theory. The map is written as a multivariate polynomial expansion and computed efficiently through the solution of a stochastic optimization problem. While our previous work [1] focused on static Bayesian inference problems, we now extend the map-based approach to sequential data assimilation, i.e., nonlinear filtering and smoothing. One scheme involves pushing forward a fixed reference measure to each filtered state distribution, while an alternative scheme computes maps that push forward the filtering distribution from one stage to the other. We compare the performance of these schemes and extend the former to problems of smoothing, using a map implementation of the forward-backward smoothing formula. Advantages of a map-based representation of the filtering and smoothing distributions include analytical expressions for posterior moments and the ability to generate arbitrary numbers of independent uniformly-weighted posterior samples without additional evaluations of the dynamical model. Perhaps the main advantage, however, is that the map approach inherently avoids issues of sample impoverishment, since it explicitly represents the posterior as the pushforward of a reference measure, rather than with a particular set of samples. The computational complexity of our algorithm is comparable to state-of-the-art particle filters. Moreover, the accuracy of the approach is controlled via the convergence criterion of the underlying optimization problem. We demonstrate the efficiency and accuracy of the map approach via data assimilation in

  16. The importance of peers: assimilation patterns among second-generation Turkish immigrants in Western Europe

    NARCIS (Netherlands)

    Ali, S.; Fokkema, C.M.

    2011-01-01

    The two dominant approaches to immigrant assimilation, segmented assimilation and "new" assimilation theories, have been successful at reporting and analyzing between-group differences in assimilation patterns. However, studies of assimilation generally do not address differences at the individual

  17. Assimilative and non-assimilative color spreading in the watercolor configuration

    Directory of Open Access Journals (Sweden)

    Eiji eKimura

    2014-09-01

    Full Text Available A colored line flanking a darker contour will appear to spread its color onto an area enclosed by the line (watercolor effect. The watercolor effect has been characterized as an assimilative effect, but non-assimilative color spreading has also been demonstrated in the same spatial configuration; e.g., when a black inner contour (IC is paired with a blue outer contour (OC, yellow color spreading can be observed. To elucidate visual mechanisms underlying these different color spreading effects, this study investigated the effects of luminance ratio between the double contours on the induced color by systematically manipulating the IC and OC luminances (Experiment 1 as well as the background luminance (Experiment 2. The results showed that the luminance conditions suitable for assimilative and non-assimilative color spreading were nearly opposite. When the Weber contrast of the IC to the background luminances (IC contrast was smaller than that of the OC (OC contrast, the induced color became similar to the IC color (assimilative spreading. In contrast, when the OC contrast was smaller than or equal to the IC contrast, the induced color became yellow (non-assimilative spreading. Extending these findings, Experiment 3 showed that bilateral color spreading, e.g., assimilative spreading on one side and non-assimilative spreading on the other side, can also be observed in the watercolor configuration. These results suggest that the assimilative and non-assimilative spreading were mediated by different visual mechanisms. The properties of the assimilative spreading are consistent with the model proposed to account for neon color spreading [Grossberg, S. & Mingolla, E. (1985 Percept. Psychophys., 38, 141-171] and extended for the watercolor effect [Pinna, B., & Grossberg, S. (2005 J. Opt. Soc. Am. A, 22, 2207-2221]. However, the present results suggest that additional mechanisms are needed to account for the non-assimilative color spreading.

  18. Assimilative and non-assimilative color spreading in the watercolor configuration.

    Science.gov (United States)

    Kimura, Eiji; Kuroki, Mikako

    2014-01-01

    A colored line flanking a darker contour will appear to spread its color onto an area enclosed by the line (watercolor effect). The watercolor effect has been characterized as an assimilative effect, but non-assimilative color spreading has also been demonstrated in the same spatial configuration; e.g., when a black inner contour (IC) is paired with a blue outer contour (OC), yellow color spreading can be observed. To elucidate visual mechanisms underlying these different color spreading effects, this study investigated the effects of luminance ratio between the double contours on the induced color by systematically manipulating the IC and the OC luminance (Experiment 1) as well as the background luminance (Experiment 2). The results showed that the luminance conditions suitable for assimilative and non-assimilative color spreading were nearly opposite. When the Weber contrast of the IC to the background luminance (IC contrast) was smaller in size than that of the OC (OC contrast), the induced color became similar to the IC color (assimilative spreading). In contrast, when the OC contrast was smaller than or equal to the IC contrast, the induced color became yellow (non-assimilative spreading). Extending these findings, Experiment 3 showed that bilateral color spreading, i.e., assimilative spreading on one side and non-assimilative spreading on the other side, can also be observed in the watercolor configuration. These results suggest that the assimilative and the non-assimilative spreading were mediated by different visual mechanisms. The properties of the assimilative spreading are consistent with the model proposed to account for neon color spreading (Grossberg and Mingolla, 1985) and extended for the watercolor effect (Pinna and Grossberg, 2005). However, the present results suggest that additional mechanisms are needed to account for the non-assimilative color spreading.

  19. Error Covariance Estimation of Mesoscale Data Assimilation

    National Research Council Canada - National Science Library

    Xu, Qin

    2005-01-01

    The goal of this project is to explore and develop new methods of error covariance estimation that will provide necessary statistical descriptions of prediction and observation errors for mesoscale data assimilation...

  20. ERP ASSIMILATION: AN END-USER APPROACH

    Directory of Open Access Journals (Sweden)

    Hurbean Luminita

    2013-07-01

    The paper discusses the ERP adoption based on the IT assimilation theory. The ERP lifecycle is associated with the IT assimilation steps. We propose a distribution of these steps along the lifecycle. Derived from the findings in the reviewed literature we will focus the cultural factors, in particular those related to the end-users (determined as a major impact factor in our previous study: Negovan et al., 2011. Our empirical study is centred on the end-users perspective and it tries to determine if and how their behaviour affects the achievement of the ERP assimilation steps. The paper reasons that organizations that understand the IT assimilation steps correlated to the ERP implementation critical factors are more likely to implement and use ERP successfully.

  1. Comparison between assimilated and non-assimilated experiments of the MACCii global reanalysis near surface ozone

    Science.gov (United States)

    Tsikerdekis, Athanasios; Katragou, Eleni; Zanis, Prodromos; Melas, Dimitrios; Eskes, Henk; Flemming, Johannes; Huijnen, Vincent; Inness, Antje; Kapsomenakis, Ioannis; Schultz, Martin; Stein, Olaf; Zerefos, Christos

    2014-05-01

    In this work we evaluate near surface ozone concentrations of the MACCii global reanalysis using measurements from the EMEP and AIRBASE database. The eight-year long reanalysis of atmospheric composition data covering the period 2003-2010 was constructed as part of the FP7-funded Monitoring Atmospheric Composition and Climate project by assimilating satellite data into a global model and data assimilation system (Inness et al., 2013). The study mainly focuses in the differences between the assimilated and the non-assimilated experiments and aims to identify and quantify any improvements achieved by adding data assimilation to the system. Results are analyzed in eight European sub-regions and region-specific Taylor plots illustrate the evaluation and the overall predictive skill of each experiment. The diurnal and annual cycles of near surface ozone are evaluated for both experiments. Furthermore ozone exposure indices for crop growth (AOT40), human health (SOMO35) and the number of days that 8-hour ozone averages exceeded 60ppb and 90ppb have been calculated for each station based on both observed and simulated data. Results indicate mostly improvement of the assimilated experiment with respect to the high near surface ozone concentrations, the diurnal cycle and range and the bias in comparison to the non-assimilated experiment. The limitations of the comparison between assimilated and non-assimilated experiments for near surface ozone are also discussed.

  2. Assimilation of Baba and Nyonya in Malaysia

    OpenAIRE

    Razaleigh Muhamat Kawangit

    2015-01-01

    This research set outs to explore the exact level of the social aspect of assimilation between Baba and Nyonya and their Malay counterparts in Malaysia. It was sure that assimilation in social aspect is a dilemma which Baba and Nyonya face when they interact with Malays as a dominant ethnic group. It suggests that when the process of interaction, their behavior changes in line with the identity of the Malays. This is because the majority influenced the minority in the Malaysian context. Whils...

  3. Computational methods for data evaluation and assimilation

    CERN Document Server

    Cacuci, Dan Gabriel

    2013-01-01

    Data evaluation and data combination require the use of a wide range of probability theory concepts and tools, from deductive statistics mainly concerning frequencies and sample tallies to inductive inference for assimilating non-frequency data and a priori knowledge. Computational Methods for Data Evaluation and Assimilation presents interdisciplinary methods for integrating experimental and computational information. This self-contained book shows how the methods can be applied in many scientific and engineering areas. After presenting the fundamentals underlying the evaluation of experiment

  4. The role of dietary creatine.

    Science.gov (United States)

    Brosnan, Margaret E; Brosnan, John T

    2016-08-01

    The daily requirement of a 70-kg male for creatine is about 2 g; up to half of this may be obtained from a typical omnivorous diet, with the remainder being synthesized in the body Creatine is a carninutrient, which means that it is only available to adults via animal foodstuffs, principally skeletal muscle, or via supplements. Infants receive creatine in mother's milk or in milk-based formulas. Vegans and infants fed on soy-based formulas receive no dietary creatine. Plasma and muscle creatine levels are usually somewhat lower in vegetarians than in omnivores. Human intake of creatine was probably much higher in Paleolithic times than today; some groups with extreme diets, such as Greenland and Alaskan Inuit, ingest much more than is currently typical. Creatine is synthesized from three amino acids: arginine, glycine and methionine (as S-adenosylmethionine). Humans can synthesize sufficient creatine for normal function unless they have an inborn error in a creatine-synthetic enzyme or a problem with the supply of substrate amino acids. Carnivorous animals, such as lions and wolves, ingest much larger amounts of creatine than humans would. The gastrointestinal tract and the liver are exposed to dietary creatine in higher concentrations before it is assimilated by other tissues. In this regard, our observations that creatine supplementation can prevent hepatic steatosis (Deminice et al. J Nutr 141:1799-1804, 2011) in a rodent model may be a function of the route of dietary assimilation. Creatine supplementation has also been reported to improve the intestinal barrier function of the rodent suffering from inflammatory bowel disease.

  5. Temporal Reference, Attentional Modulation, and Crossmodal Assimilation

    Directory of Open Access Journals (Sweden)

    Yingqi Wan

    2018-06-01

    Full Text Available Crossmodal assimilation effect refers to the prominent phenomenon by which ensemble mean extracted from a sequence of task-irrelevant distractor events, such as auditory intervals, assimilates/biases the perception (such as visual interval of the subsequent task-relevant target events in another sensory modality. In current experiments, using visual Ternus display, we examined the roles of temporal reference, materialized as the time information accumulated before the onset of target event, as well as the attentional modulation in crossmodal temporal interaction. Specifically, we examined how the global time interval, the mean auditory inter-intervals and the last interval in the auditory sequence assimilate and bias the subsequent percept of visual Ternus motion (element motion vs. group motion. We demonstrated that both the ensemble (geometric mean and the last interval in the auditory sequence contribute to bias the percept of visual motion. Longer mean (or last interval elicited more reports of group motion, whereas the shorter mean (or last auditory intervals gave rise to more dominant percept of element motion. Importantly, observers have shown dynamic adaptation to the temporal reference of crossmodal assimilation: when the target visual Ternus stimuli were separated by a long gap interval after the preceding sound sequence, the assimilation effect by ensemble mean was reduced. Our findings suggested that crossmodal assimilation relies on a suitable temporal reference on adaptation level, and revealed a general temporal perceptual grouping principle underlying complex audio-visual interactions in everyday dynamic situations.

  6. A simple lightning assimilation technique for improving ...

    Science.gov (United States)

    Convective rainfall is often a large source of error in retrospective modeling applications. In particular, positive rainfall biases commonly exist during summer months due to overactive convective parameterizations. In this study, lightning assimilation was applied in the Kain-Fritsch (KF) convective scheme to improve retrospective simulations using the Weather Research and Forecasting (WRF) model. The assimilation method has a straightforward approach: force KF deep convection where lightning is observed and, optionally, suppress deep convection where lightning is absent. WRF simulations were made with and without lightning assimilation over the continental United States for July 2012, July 2013, and January 2013. The simulations were evaluated against NCEP stage-IV precipitation data and MADIS near-surface meteorological observations. In general, the use of lightning assimilation considerably improves the simulation of summertime rainfall. For example, the July 2012 monthly averaged bias of 6 h accumulated rainfall is reduced from 0.54 to 0.07 mm and the spatial correlation is increased from 0.21 to 0.43 when lightning assimilation is used. Statistical measures of near-surface meteorological variables also are improved. Consistent improvements also are seen for the July 2013 case. These results suggest that this lightning assimilation technique has the potential to substantially improve simulation of warm-season rainfall in retrospective WRF applications. The

  7. Data Assimilation: Making Sense of Earth Observation

    Directory of Open Access Journals (Sweden)

    William Albert Lahoz

    2014-05-01

    Full Text Available Climate change, air quality and environmental degradation are important societal challenges for the 21st Century. These challenges require an intelligent response from society, which in turn requires access to information about the Earth System. This information comes from observations and prior knowledge, the latter typically embodied in a model describing relationships between variables of the Earth System. Data assimilation provides an objective methodology to combine observational and model information to provide an estimate of the most likely state and its uncertainty for the whole Earth System. This approach adds value to the observations – by filling in the spatio-temporal gaps in observations; and to the model – by constraining it with the observations. In this review paper we motivate data assimilation as a methodology to fill in the gaps in observational information; illustrate the data assimilation approach with examples that span a broad range of features of the Earth System (atmosphere, including chemistry; ocean; land surface; and discuss the outlook for data assimilation, including the novel application of data assimilation ideas to observational information obtained using Citizen Science. Ultimately, a strong motivation of data assimilation is the many benefits it provides to users. These include: providing the initial state for weather and air quality forecasts; providing analyses and reanalyses for studying the Earth System; evaluating observations, instruments and models; assessing the relative value of elements of the Global Observing System (GOS; and assessing the added value of future additions to the GOS.

  8. The CarbonTracker Data Assimilation Shell (CTDAS) v1.0: implementation and global carbon balance 2001-2015

    Science.gov (United States)

    van der Laan-Luijkx, Ingrid T.; van der Velde, Ivar R.; van der Veen, Emma; Tsuruta, Aki; Stanislawska, Karolina; Babenhauserheide, Arne; Zhang, Hui Fang; Liu, Yu; He, Wei; Chen, Huilin; Masarie, Kenneth A.; Krol, Maarten C.; Peters, Wouter

    2017-07-01

    Data assimilation systems are used increasingly to constrain the budgets of reactive and long-lived gases measured in the atmosphere. Each trace gas has its own lifetime, dominant sources and sinks, and observational network (from flask sampling and in situ measurements to space-based remote sensing) and therefore comes with its own optimal configuration of the data assimilation. The CarbonTracker Europe data assimilation system for CO2 estimates global carbon sources and sinks, and updates are released annually and used in carbon cycle studies. CarbonTracker Europe simulations are performed using the new modular implementation of the data assimilation system: the CarbonTracker Data Assimilation Shell (CTDAS). Here, we present and document this redesign of the data assimilation code that forms the heart of CarbonTracker, specifically meant to enable easy extension and modification of the data assimilation system. This paper also presents the setup of the latest version of CarbonTracker Europe (CTE2016), including the use of the gridded state vector, and shows the resulting carbon flux estimates. We present the distribution of the carbon sinks over the hemispheres and between the land biosphere and the oceans. We show that with equal fossil fuel emissions, 2015 has a higher atmospheric CO2 growth rate compared to 2014, due to reduced net land carbon uptake in later year. The European carbon sink is especially present in the forests, and the average net uptake over 2001-2015 was 0. 17 ± 0. 11 PgC yr-1 with reductions to zero during drought years. Finally, we also demonstrate the versatility of CTDAS by presenting an overview of the wide range of applications for which it has been used so far.

  9. Dietary sodium

    DEFF Research Database (Denmark)

    Graudal, Niels

    2015-01-01

    The 2013 Institute of Medicine (IOM) report "Sodium Intake in Populations: Assessment of Evidence" did not support the current recommendations of the IOM and the American Heart Association (AHA) to reduce daily dietary sodium intake to below 2,300 mg. The report concluded that the population...

  10. Dietary bioavailability of Cu adsorbed to colloidal hydrous ferric oxide

    Science.gov (United States)

    Cain, Daniel J.; Croteau, Marie-Noële; Fuller, Christopher C.

    2013-01-01

    The dietary bioavailability of copper (Cu) adsorbed to synthetic colloidal hydrous ferric oxide (HFO) was evaluated from the assimilation of 65Cu by two benthic grazers, a gastropod and a larval mayfly. HFO was synthesized, labeled with 65Cu to achieve a Cu/Fe ratio comparable to that determined in naturally formed HFO, and then aged. The labeled colloids were mixed with a food source (the diatom Nitzschia palea) to yield dietary 65Cu concentrations ranging from 211 to 2204 nmol/g (dry weight). Animals were pulse fed the contaminated diet and assimilation of 65Cu from HFO was determined following 1–3 days of depuration. Mass transfer of 65Cu from HFO to the diatom was less than 1%, indicating that HFO was the source of 65Cu to the grazers. Estimates of assimilation efficiency indicated that the majority of Cu ingested as HFO was assimilated (values >70%), implying that colloidal HFO potentially represents a source of dietary Cu to benthic grazers, especially where there is active formation and infiltration of these particles into benthic substrates.

  11. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... for a thyroid scan is 30 minutes or less. Thyroid Uptake You will be given radioactive iodine ( ... for each thyroid uptake is five minutes or less. top of page What will I experience during ...

  12. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... uptake measurements are obtained at different times. For example, you may have uptake measurements at four to ... medicine procedures can be time consuming. It can take several hours to days for the radiotracer to ...

  13. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... Scan and Uptake Thyroid scan and uptake uses small amounts of radioactive materials called radiotracers, a special ... is a branch of medical imaging that uses small amounts of radioactive material to diagnose and determine ...

  14. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... radioactive iodine uptake test (RAIU) is also known as a thyroid uptake. It is a measurement of ... potential to identify disease in its earliest stages as well as a patient’s immediate response to therapeutic ...

  15. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... known as a thyroid uptake. It is a measurement of thyroid function, but does not involve imaging. ... eating can affect the accuracy of the uptake measurement. Jewelry and other metallic accessories should be left ...

  16. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... Uptake? A thyroid scan is a type of nuclear medicine imaging. The radioactive iodine uptake test (RAIU) ... of thyroid function, but does not involve imaging. Nuclear medicine is a branch of medical imaging that ...

  17. Acculturation and dietary patterns among residents of Surinamese origin in the Netherlands: the HELIUS dietary pattern study.

    Science.gov (United States)

    Sturkenboom, Suzanne M; Dekker, Louise H; Lamkaddem, Majda; Schaap, Laura A; de Vries, Jeanne H M; Stronks, Karien; Nicolaou, Mary

    2016-03-01

    Insight into the role of acculturation in dietary patterns is important to inform the development of nutrition programmes that target ethnic minority groups. Therefore, the present study aimed to investigate how the adherence to dietary patterns within an ethnic minority population in the Netherlands varies by acculturation level compared with the host population. Cross-sectional study using data of the HELIUS study. Dietary patterns were assessed with an ethnic-specific FFQ. Acculturation was operationalized using unidimensional proxies (residence duration, age at migration and generation status) as well as on the basis of the bidimensional perspective, defined by four distinct acculturation strategies: assimilation, integration, separation and marginalization. Amsterdam, the Netherlands. Participants of Dutch (n 1370) and Surinamese (n 1727) origin. Three dietary patterns were identified: (i) 'noodle/rice dishes and white meat' (traditional Surinamese pattern); (ii) 'red meat, snacks and sweets'; and (iii) 'vegetables, fruit and nuts'. Surinamese-origin respondents adhered more to the traditional Surinamese pattern than the other dietary patterns. Neither the unidimensional proxies nor the bidimensional acculturation strategies demonstrated consistent associations with dietary patterns. The lack of consistent association between acculturation and dietary patterns in the present study indicates that dietary patterns are quite robust. Understanding the continued adherence to traditional dietary patterns when developing dietary interventions in ethnic minority groups is warranted.

  18. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... for a thyroid scan is 30 minutes or less. Thyroid Uptake You will be given radioactive iodine (I-123 or I-131) in liquid or capsule form to swallow. The thyroid uptake will begin several hours to 24 hours later. Often, two separate uptake ...

  19. Coupled assimilation for an intermediated coupled ENSO prediction model

    Science.gov (United States)

    Zheng, Fei; Zhu, Jiang

    2010-10-01

    The value of coupled assimilation is discussed using an intermediate coupled model in which the wind stress is the only atmospheric state which is slavery to model sea surface temperature (SST). In the coupled assimilation analysis, based on the coupled wind-ocean state covariance calculated from the coupled state ensemble, the ocean state is adjusted by assimilating wind data using the ensemble Kalman filter. As revealed by a series of assimilation experiments using simulated observations, the coupled assimilation of wind observations yields better results than the assimilation of SST observations. Specifically, the coupled assimilation of wind observations can help to improve the accuracy of the surface and subsurface currents because the correlation between the wind and ocean currents is stronger than that between SST and ocean currents in the equatorial Pacific. Thus, the coupled assimilation of wind data can decrease the initial condition errors in the surface/subsurface currents that can significantly contribute to SST forecast errors. The value of the coupled assimilation of wind observations is further demonstrated by comparing the prediction skills of three 12-year (1997-2008) hindcast experiments initialized by the ocean-only assimilation scheme that assimilates SST observations, the coupled assimilation scheme that assimilates wind observations, and a nudging scheme that nudges the observed wind stress data, respectively. The prediction skills of two assimilation schemes are significantly better than those of the nudging scheme. The prediction skills of assimilating wind observations are better than assimilating SST observations. Assimilating wind observations for the 2007/2008 La Niña event triggers better predictions, while assimilating SST observations fails to provide an early warning for that event.

  20. Model Uncertainty Quantification Methods In Data Assimilation

    Science.gov (United States)

    Pathiraja, S. D.; Marshall, L. A.; Sharma, A.; Moradkhani, H.

    2017-12-01

    Data Assimilation involves utilising observations to improve model predictions in a seamless and statistically optimal fashion. Its applications are wide-ranging; from improving weather forecasts to tracking targets such as in the Apollo 11 mission. The use of Data Assimilation methods in high dimensional complex geophysical systems is an active area of research, where there exists many opportunities to enhance existing methodologies. One of the central challenges is in model uncertainty quantification; the outcome of any Data Assimilation study is strongly dependent on the uncertainties assigned to both observations and models. I focus on developing improved model uncertainty quantification methods that are applicable to challenging real world scenarios. These include developing methods for cases where the system states are only partially observed, where there is little prior knowledge of the model errors, and where the model error statistics are likely to be highly non-Gaussian.

  1. Data assimilation the ensemble Kalman filter

    CERN Document Server

    Evensen, Geir

    2007-01-01

    Data Assimilation comprehensively covers data assimilation and inverse methods, including both traditional state estimation and parameter estimation. This text and reference focuses on various popular data assimilation methods, such as weak and strong constraint variational methods and ensemble filters and smoothers. It is demonstrated how the different methods can be derived from a common theoretical basis, as well as how they differ and/or are related to each other, and which properties characterize them, using several examples. Rather than emphasize a particular discipline such as oceanography or meteorology, it presents the mathematical framework and derivations in a way which is common for any discipline where dynamics is merged with measurements. The mathematics level is modest, although it requires knowledge of basic spatial statistics, Bayesian statistics, and calculus of variations. Readers will also appreciate the introduction to the mathematical methods used and detailed derivations, which should b...

  2. Selenium assimilation and loss by an insect predator and its relationship to Se subcellular partitioning in two prey types

    Energy Technology Data Exchange (ETDEWEB)

    Dubois, Maitee [Institut national de la recherche scientifique - Eau, Terre et Environnement, Universite du Quebec, Quebec City, Quebec, G1K 9A9 (Canada); Hare, Landis [Institut national de la recherche scientifique - Eau, Terre et Environnement, Universite du Quebec, Quebec City, Quebec, G1K 9A9 (Canada)], E-mail: landis@ete.inrs.ca

    2009-03-15

    Subcellular selenium (Se) distributions in the oligochaete Tubifex tubifex and in the insect Chironomus riparius did not vary with Se exposure duration, which was consistent with the observations that the duration of prey Se exposure had little influence on either Se assimilation or loss by a predatory insect (the alderfly Sialis velata). However, these two prey types differed in how Se was distributed in their cells. Overall, the predator assimilated a mean of 66% of the Se present in its prey, which was similar to the mean percentage of Se in prey cells (62%) that was theoretically available for uptake (that is, Se in the protein and organelle fractions). Likewise, data for cadmium, nickel and thallium suggest that predictions of trace element transfer between prey and predator are facilitated by considering the subcellular partitioning of these contaminants in prey cells. - Selenium assimilation by a predatory aquatic insect depends on Se availability in the cells of its prey.

  3. Selenium assimilation and loss by an insect predator and its relationship to Se subcellular partitioning in two prey types

    International Nuclear Information System (INIS)

    Dubois, Maitee; Hare, Landis

    2009-01-01

    Subcellular selenium (Se) distributions in the oligochaete Tubifex tubifex and in the insect Chironomus riparius did not vary with Se exposure duration, which was consistent with the observations that the duration of prey Se exposure had little influence on either Se assimilation or loss by a predatory insect (the alderfly Sialis velata). However, these two prey types differed in how Se was distributed in their cells. Overall, the predator assimilated a mean of 66% of the Se present in its prey, which was similar to the mean percentage of Se in prey cells (62%) that was theoretically available for uptake (that is, Se in the protein and organelle fractions). Likewise, data for cadmium, nickel and thallium suggest that predictions of trace element transfer between prey and predator are facilitated by considering the subcellular partitioning of these contaminants in prey cells. - Selenium assimilation by a predatory aquatic insect depends on Se availability in the cells of its prey

  4. Scalable and balanced dynamic hybrid data assimilation

    Science.gov (United States)

    Kauranne, Tuomo; Amour, Idrissa; Gunia, Martin; Kallio, Kari; Lepistö, Ahti; Koponen, Sampsa

    2017-04-01

    Scalability of complex weather forecasting suites is dependent on the technical tools available for implementing highly parallel computational kernels, but to an equally large extent also on the dependence patterns between various components of the suite, such as observation processing, data assimilation and the forecast model. Scalability is a particular challenge for 4D variational assimilation methods that necessarily couple the forecast model into the assimilation process and subject this combination to an inherently serial quasi-Newton minimization process. Ensemble based assimilation methods are naturally more parallel, but large models force ensemble sizes to be small and that results in poor assimilation accuracy, somewhat akin to shooting with a shotgun in a million-dimensional space. The Variational Ensemble Kalman Filter (VEnKF) is an ensemble method that can attain the accuracy of 4D variational data assimilation with a small ensemble size. It achieves this by processing a Gaussian approximation of the current error covariance distribution, instead of a set of ensemble members, analogously to the Extended Kalman Filter EKF. Ensemble members are re-sampled every time a new set of observations is processed from a new approximation of that Gaussian distribution which makes VEnKF a dynamic assimilation method. After this a smoothing step is applied that turns VEnKF into a dynamic Variational Ensemble Kalman Smoother VEnKS. In this smoothing step, the same process is iterated with frequent re-sampling of the ensemble but now using past iterations as surrogate observations until the end result is a smooth and balanced model trajectory. In principle, VEnKF could suffer from similar scalability issues as 4D-Var. However, this can be avoided by isolating the forecast model completely from the minimization process by implementing the latter as a wrapper code whose only link to the model is calling for many parallel and totally independent model runs, all of them

  5. Cellulose degradation and assimilation by the unicellular phototrophic eukaryote Chlamydomonas reinhardtii.

    Science.gov (United States)

    Blifernez-Klassen, Olga; Klassen, Viktor; Doebbe, Anja; Kersting, Klaudia; Grimm, Philipp; Wobbe, Lutz; Kruse, Olaf

    2012-01-01

    Plants convert sunlight to biomass, which is primarily composed of lignocellulose, the most abundant natural biopolymer and a potential feedstock for fuel and chemical production. Cellulose assimilation has so far only been described for heterotrophic organisms that rely on photosynthetically active primary producers of organic compounds. Among phototrophs, the unicellular green microalga Chlamydomonas reinhardtii is widely known as one of the best established model organisms. It occupies many habitats, including aquatic and soil ecosystems. This ubiquity underscores the versatile metabolic properties of this microorganism. Here we present yet another paradigm of adaptation for C. reinhardtii, highlighting its photoheterotrophic ability to utilize cellulose for growth in the absence of other carbon sources. When grown under CO(2)-limiting conditions in the light, secretion of endo-β-1,4-glucanases by the cell causes digestion of exogenous cellulose, followed by cellobiose uptake and assimilation. Phototrophic microbes like C. reinhardtii may thus serve as biocatalysts for cellulosic biofuel production.

  6. The importance of cytosolic glutamine synthetase in nitrogen assimilation and recycling

    Energy Technology Data Exchange (ETDEWEB)

    Bernard, S.M.; Habash, D.Z.

    2009-07-02

    Glutamine synthetase assimilates ammonium into amino acids, thus it is a key enzyme for nitrogen metabolism. The cytosolic isoenzymes of glutamine synthetase assimilate ammonium derived from primary nitrogen uptake and from various internal nitrogen recycling pathways. In this way, cytosolic glutamine synthetase is crucial for the remobilization of protein-derived nitrogen. Cytosolic glutamine synthetase is encoded by a small family of genes that are well conserved across plant species. Members of the cytosolic glutamine synthetase gene family are regulated in response to plant nitrogen status, as well as to environmental cues, such as nitrogen availability and biotic/abiotic stresses. The complex regulation of cytosolic glutamine synthetase at the transcriptional to post-translational levels is key to the establishment of a specific physiological role for each isoenzyme. The diverse physiological roles of cytosolic glutamine synthetase isoenzymes are important in relation to current agricultural and ecological issues.

  7. Effect of multi-effect triazole on absorption of phosphorus and nitrogen and distribution of 14CO2-assimilates in rape plant

    International Nuclear Information System (INIS)

    Xi Haifu; Ye Qingfu; Shen Huicong; Zhou Weijun

    1995-01-01

    By using tracer technique, the effects of Multi-Effect Triazole (MET) on uptake of 32 P, 15 N and distribution of 14 CO 2 -assimilates in rape plant were studied. The experimental results showed that the foliar spraying of MET with the concentration of 150 ppm in three leaves stage could significantly increase 32 P uptake by 75.34%∼101.08%, the utilization rate of base fertilizer 15 NH 4 HCO 3 by 9.10%. And the rate of photosynthesis increased by 7.44%∼31.40% in seedling stage, by 47.74% in initial flowering stage and by 47.93% in mature stage. The regulation effects of MET on distribution of 15 N absorbed and 14 CO 2 -assimilates were shown by increasing absorption of 15 N and assimilates in seeds of rape plant

  8. Differentiation between Trichophyton mentagrophytes and T. rubrum by sorbitol assimilation.

    OpenAIRE

    Rezusta, A; Rubio, M C; Alejandre, M C

    1991-01-01

    Trichophyton rubrum was easily differentiated from T. mentagrophytes by its ability to assimilate sorbitol with an API 20C AUX strip. One hundred percent of 36 T. rubrum strains and none of 147 T. mentagrophytes strains assimilated sorbitol.

  9. Assimilation of Doppler weather radar observations in a mesoscale ...

    Indian Academy of Sciences (India)

    Research (PSU–NCAR) mesoscale model (MM5) version 3.5.6. The variational data assimilation ... investigation of the direct assimilation of radar reflectivity data in 3DVAR system. The present ...... Results presented in this paper are based on.

  10. Interaction of Sulfate Assimilation with Carbon and Nitrogen Metabolism in Lemna minor1

    Science.gov (United States)

    Kopriva, Stanislav; Suter, Marianne; von Ballmoos, Peter; Hesse, Holger; Krähenbühl, Urs; Rennenberg, Heinz; Brunold, Christian

    2002-01-01

    Cysteine synthesis from sulfide and O-acetyl-l-serine (OAS) is a reaction interconnecting sulfate, nitrogen, and carbon assimilation. Using Lemna minor, we analyzed the effects of omission of CO2 from the atmosphere and simultaneous application of alternative carbon sources on adenosine 5′-phosphosulfate reductase (APR) and nitrate reductase (NR), the key enzymes of sulfate and nitrate assimilation, respectively. Incubation in air without CO2 led to severe decrease in APR and NR activities and mRNA levels, but ribulose-1,5-bisphosphate carboxylase/oxygenase was not considerably affected. Simultaneous addition of sucrose (Suc) prevented the reduction in enzyme activities, but not in mRNA levels. OAS, a known regulator of sulfate assimilation, could also attenuate the effect of missing CO2 on APR, but did not affect NR. When the plants were subjected to normal air after a 24-h pretreatment in air without CO2, APR and NR activities and mRNA levels recovered within the next 24 h. The addition of Suc and glucose in air without CO2 also recovered both enzyme activities, with OAS again influenced only APR. 35SO42− feeding showed that treatment in air without CO2 severely inhibited sulfate uptake and the flux through sulfate assimilation. After a resupply of normal air or the addition of Suc, incorporation of 35S into proteins and glutathione greatly increased. OAS treatment resulted in high labeling of cysteine; the incorporation of 35S in proteins and glutathione was much less increased compared with treatment with normal air or Suc. These results corroborate the tight interconnection of sulfate, nitrate, and carbon assimilation. PMID:12428005

  11. Data assimilation of CALIPSO aerosol observations

    Directory of Open Access Journals (Sweden)

    T. T. Sekiyama

    2010-01-01

    Full Text Available We have developed an advanced data assimilation system for a global aerosol model with a four-dimensional ensemble Kalman filter in which the Level 1B data from the Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO were successfully assimilated for the first time, to the best of the authors' knowledge. A one-month data assimilation cycle experiment for dust, sulfate, and sea-salt aerosols was performed in May 2007. The results were validated via two independent observations: 1 the ground-based lidar network in East Asia, managed by the National Institute for Environmental Studies of Japan, and 2 weather reports of aeolian dust events in Japan. Detailed four-dimensional structures of aerosol outflows from source regions over oceans and continents for various particle types and sizes were well reproduced. The intensity of dust emission at each grid point was also corrected by this data assimilation system. These results are valuable for the comprehensive analysis of aerosol behavior as well as aerosol forecasting.

  12. Development of a data assimilation algorithm

    DEFF Research Database (Denmark)

    Thomsen, Per Grove; Zlatev, Zahari

    2008-01-01

    It is important to incorporate all available observations when large-scale mathematical models arising in different fields of science and engineering are used to study various physical and chemical processes. Variational data assimilation techniques can be used in the attempts to utilize efficien......It is important to incorporate all available observations when large-scale mathematical models arising in different fields of science and engineering are used to study various physical and chemical processes. Variational data assimilation techniques can be used in the attempts to utilize...... assimilation technique is applied. Therefore, it is important to study the interplay between the three components of the variational data assimilation techniques as well as to apply powerful parallel computers in the computations. Some results obtained in the search for a good combination of numerical methods...... computers, Mathematics and Computers in Simulation, 65 (2004) 557–577, Z. Zlatev, Computer Treatment of Large Air Pollution Models, Kluwer Academic Publishers, Dordrecht, Boston, London, 1995]. The ideas are rather general and can easily be applied in connection with other mathematical models....

  13. Nitrogen assimilation in soybean nodules, 1

    International Nuclear Information System (INIS)

    Ohyama, Takuji; Kumazawa, Kikuo

    1980-01-01

    In order to elucidate the pathways to assimilate the ammonia produced by N 2 -fixation in soybean nodules, 15 N-labeled compounds were administered to intact nodules or nodule slices pretreated with various inhibitors of nitrogen assimilation. After exposure to 15 N 2 , 15 N-incorporation into various nitrogenous compounds was investigated in attached nodules injected with methionine sulfoximine (MSX) or azaserine (AS). MSX treatment increased the 15 N content of ammonia more than 6 times, however, depressed 15 N content of most of amides and amino acids. AS treatment enhanced 15 N content of amido-N of glutamine as well as ammonia, but decreased amino-N of glutamine and most of amino acids. Experiments with nodule slices pretreated with MSX or AS solution and then fed with 15 N-labeled ammonia or amido- 15 N of glutamine showed the same trends. Aminooxyacetate inhibited nitrogen flow from glutamic acid to other amino acids. These results strongly indicate that the ammonia produced by N 2 -fixation is assimilated by GS/GOGAT system to glutamic acid and then transaminated to various amino acids in situ. 15 N-incorporation patterns in nodule slices fed with 15 N-labeled ammonia, hydroxylamine, nitrite were similar, but nitrate seemed to be reduced in a definite compartment and assimilated similarly as in intact nodules fed with 15 N 2 (author)

  14. Data assimilation for air quality models

    DEFF Research Database (Denmark)

    Silver, Jeremy David

    2014-01-01

    -dimensional optimal interpolation procedure (OI), an Ensemble Kalman Filter (EnKF), and a three-dimensional variational scheme (3D-var). The three assimilation procedures are described and tested. A multi-faceted approach is taken for the verification, using independent measurements from surface air-quality...

  15. Data ingestion and assimilation in ionospheric models

    Czech Academy of Sciences Publication Activity Database

    Burešová, Dalia; Nava, B.; Galkin, I.; Angling, M.; Stankov, S. M.; Coisson, P.

    2009-01-01

    Roč. 52, 3/4 (2009), s. 235-253 ISSN 1593-5213 R&D Projects: GA ČR GA205/08/1356; GA MŠk OC 091 Institutional research plan: CEZ:AV0Z30420517 Keywords : ionosphere * models * data assimilation * data ingestion Subject RIV: DG - Athmosphere Sciences, Meteorology Impact factor: 0.548, year: 2009

  16. A study on assimilating potential vorticity data

    Science.gov (United States)

    Li, Yong; Ménard, Richard; Riishøjgaard, Lars Peter; Cohn, Stephen E.; Rood, Richard B.

    1998-08-01

    The correlation that exists between the potential vorticity (PV) field and the distribution of chemical tracers such as ozone suggests the possibility of using tracer observations as proxy PV data in atmospheric data assimilation systems. Especially in the stratosphere, there are plentiful tracer observations but a general lack of reliable wind observations, and the correlation is most pronounced. The issue investigated in this study is how model dynamics would respond to the assimilation of PV data. First, numerical experiments of identical-twin type were conducted with a simple univariate nuding algorithm and a global shallow water model based on PV and divergence (PV-D model). All model fields are successfully reconstructed through the insertion of complete PV data alone if an appropriate value for the nudging coefficient is used. A simple linear analysis suggests that slow modes are recovered rapidly, at a rate nearly independent of spatial scale. In a more realistic experiment, appropriately scaled total ozone data from the NIMBUS-7 TOMS instrument were assimilated as proxy PV data into the PV-D model over a 10-day period. The resulting model PV field matches the observed total ozone field relatively well on large spatial scales, and the PV, geopotential and divergence fields are dynamically consistent. These results indicate the potential usefulness that tracer observations, as proxy PV data, may offer in a data assimilation system.

  17. The digestion of dietary triacylglycerols

    DEFF Research Database (Denmark)

    Mu, Huiling; Høy, Carl-Erik

    2004-01-01

    Dietary triacylglycerols (TAGs) are the major lipid components in the human diet and they are carriers of energy as well as important fatty acids. Many factors affect the digestion and absorption of TAGs. Evidence is accumulating that, in addition to the overall fatty acid profile, the TAG......, or one may speculate additionally on the possibilities of modifying the structure of fats to affect their absorption and the distribution of the fatty acids in the body after digestion and uptake. In this review we will summarize diverse aspects of TAG digestion and absorption, as well as the influences...... of the fatty acid composition and the intramolecular structure of dietary TAGs on their digestion and absorption....

  18. Thyroid uptake test

    International Nuclear Information System (INIS)

    Ganatra, R.D.

    1992-01-01

    The uptake of radioiodine by the thyroid gland is altered by the iodine content of diet or drugs. American diet has a high iodine content because each slice of the white bread contains nearly 150μg of iodine due to the bleaching process employed in the production of the bread. This carrier content of iodine reduces the uptake so much, that the normal American uptakes are usually three to four times lower than the uptakes in the developing countries. The other drawback of the thyroid uptake test is that it is affected by the iodine containing drugs. Anti-diarrhoea medications are quire common in the developing countries and many of them contain iodine moiety. Without a reliable drug history, a low thyroid uptake value may lead to a misleading conclusion

  19. Empowering Geoscience with Improved Data Assimilation Using the Data Assimilation Research Testbed "Manhattan" Release.

    Science.gov (United States)

    Raeder, K.; Hoar, T. J.; Anderson, J. L.; Collins, N.; Hendricks, J.; Kershaw, H.; Ha, S.; Snyder, C.; Skamarock, W. C.; Mizzi, A. P.; Liu, H.; Liu, J.; Pedatella, N. M.; Karspeck, A. R.; Karol, S. I.; Bitz, C. M.; Zhang, Y.

    2017-12-01

    The capabilities of the Data Assimilation Research Testbed (DART) at NCAR have been significantly expanded with the recent "Manhattan" release. DART is an ensemble Kalman filter based suite of tools, which enables researchers to use data assimilation (DA) without first becoming DA experts. Highlights: significant improvement in efficient ensemble DA for very large models on thousands of processors, direct read and write of model state files in parallel, more control of the DA output for finer-grained analysis, new model interfaces which are useful to a variety of geophysical researchers, new observation forward operators and the ability to use precomputed forward operators from the forecast model. The new model interfaces and example applications include the following: MPAS-A; Model for Prediction Across Scales - Atmosphere is a global, nonhydrostatic, variable-resolution mesh atmospheric model, which facilitates multi-scale analysis and forecasting. The absence of distinct subdomains eliminates problems associated with subdomain boundaries. It demonstrates the ability to consistently produce higher-quality analyses than coarse, uniform meshes do. WRF-Chem; Weather Research and Forecasting + (MOZART) Chemistry model assimilates observations from FRAPPÉ (Front Range Air Pollution and Photochemistry Experiment). WACCM-X; Whole Atmosphere Community Climate Model with thermosphere and ionosphere eXtension assimilates observations of electron density to investigate sudden stratospheric warming. CESM (weakly) coupled assimilation; NCAR's Community Earth System Model is used for assimilation of atmospheric and oceanic observations into their respective components using coupled atmosphere+land+ocean+sea+ice forecasts. CESM2.0; Assimilation in the atmospheric component (CAM, WACCM) of the newly released version is supported. This version contains new and extensively updated components and software environment. CICE; Los Alamos sea ice model (in CESM) is used to assimilate

  20. High bicarbonate assimilation in the dark by Arctic bacteria.

    Science.gov (United States)

    Alonso-Sáez, Laura; Galand, Pierre E; Casamayor, Emilio O; Pedrós-Alió, Carlos; Bertilsson, Stefan

    2010-12-01

    Although both autotrophic and heterotrophic microorganisms incorporate CO₂ in the dark through different metabolic pathways, this process has usually been disregarded in oxic marine environments. We studied the significance and mediators of dark bicarbonate assimilation in dilution cultures inoculated with winter Arctic seawater. At stationary phase, bicarbonate incorporation rates were high (0.5-2.5 μg C L⁻¹ d⁻¹) and correlated with rates of bacterial heterotrophic production, suggesting that most of the incorporation was due to heterotrophs. Accordingly, very few typically chemoautotrophic bacteria were detected by 16S rRNA gene cloning. The genetic analysis of the biotin carboxylase gene accC putatively involved in archaeal CO₂ fixation did not yield any archaeal sequence, but amplified a variety of bacterial carboxylases involved in fatty acids biosynthesis, anaplerotic pathways and leucine catabolism. Gammaproteobacteria dominated the seawater cultures (40-70% of cell counts), followed by Betaproteobacteria and Flavobacteria as shown by catalyzed reporter deposition fluorescence in situ hybridization (CARDFISH). Both Beta- and Gammaproteobacteria were active in leucine and bicarbonate uptake, while Flavobacteria did not take up bicarbonate, as measured by microautoradiography combined with CARDFISH. Within Gammaproteobacteria, Pseudoalteromonas-Colwellia and Oleispira were very active in bicarbonate uptake (ca. 30 and 70% of active cells, respectively), while the group Arctic96B-16 did not take up bicarbonate. Our results suggest that, potentially, the incorporation of CO₂ can be relevant for the metabolism of specific Arctic heterotrophic phylotypes, promoting the maintenance of their cell activity and/or longer survival under resource depleted conditions.

  1. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available Toggle navigation Test/Treatment Patient Type Screening/Wellness Disease/Condition Safety En Español More Info Images/Videos About Us News Physician ... of nuclear medicine imaging. The radioactive iodine uptake test (RAIU) is also known as a thyroid uptake. ...

  2. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available Toggle navigation Test/Treatment Patient Type Screening/Wellness Disease/Condition Safety En Español More Info Images/Videos About Us News Physician Resources Professions Site Index A-Z Thyroid Scan and Uptake Thyroid scan and uptake uses ...

  3. Assimilation of Gridded GRACE Terrestrial Water Storage Estimates in the North American Land Data Assimilation System

    Science.gov (United States)

    Kumar, Sujay V.; Zaitchik, Benjamin F.; Peters-Lidard, Christa D.; Rodell, Matthew; Reichle, Rolf; Li, Bailing; Jasinski, Michael; Mocko, David; Getirana, Augusto; De Lannoy, Gabrielle; hide

    2016-01-01

    The objective of the North American Land Data Assimilation System (NLDAS) is to provide best available estimates of near-surface meteorological conditions and soil hydrological status for the continental United States. To support the ongoing efforts to develop data assimilation (DA) capabilities for NLDAS, the results of Gravity Recovery and Climate Experiment (GRACE) DA implemented in a manner consistent with NLDAS development are presented. Following previous work, GRACE terrestrial water storage (TWS) anomaly estimates are assimilated into the NASA Catchment land surface model using an ensemble smoother. In contrast to many earlier GRACE DA studies, a gridded GRACE TWS product is assimilated, spatially distributed GRACE error estimates are accounted for, and the impact that GRACE scaling factors have on assimilation is evaluated. Comparisons with quality-controlled in situ observations indicate that GRACE DA has a positive impact on the simulation of unconfined groundwater variability across the majority of the eastern United States and on the simulation of surface and root zone soil moisture across the country. Smaller improvements are seen in the simulation of snow depth, and the impact of GRACE DA on simulated river discharge and evapotranspiration is regionally variable. The use of GRACE scaling factors during assimilation improved DA results in the western United States but led to small degradations in the eastern United States. The study also found comparable performance between the use of gridded and basin averaged GRACE observations in assimilation. Finally, the evaluations presented in the paper indicate that GRACE DA can be helpful in improving the representation of droughts.

  4. Data Assimilation in Integrated and Distributed Hydrological Models

    DEFF Research Database (Denmark)

    Zhang, Donghua

    processes and provide simulations in refined temporal and spatial resolutions. Recent developments in measurement and sensor technologies have significantly improved the coverage, quality, frequency and diversity of hydrological observations. Data assimilation provides a great potential in relation...... point of view, different assimilation methodologies and techniques have been developed or customized to better serve hydrological assimilation. From the application point of view, real data and real-world complex catchments are used with the focus of investigating the models’ improvements with data...... a variety of model uncertainty sources and scales. Next the groundwater head assimilation experiment was tested in a much more complex catchment with assimilation of biased real observations. In such cases, the bias-aware assimilation method significantly outperforms the standard assimilation method...

  5. Dark matter assimilation into the baryon asymmetry

    International Nuclear Information System (INIS)

    D'Eramo, Francesco; Fei, Lin; Thaler, Jesse

    2012-01-01

    Pure singlets are typically disfavored as dark matter candidates, since they generically have a thermal relic abundance larger than the observed value. In this paper, we propose a new dark matter mechanism called a ssimilation , which takes advantage of the baryon asymmetry of the universe to generate the correct relic abundance of singlet dark matter. Through assimilation, dark matter itself is efficiently destroyed, but dark matter number is stored in new quasi-stable heavy states which carry the baryon asymmetry. The subsequent annihilation and late-time decay of these heavy states yields (symmetric) dark matter as well as (asymmetric) standard model baryons. We study in detail the case of pure bino dark matter by augmenting the minimal supersymmetric standard model with vector-like chiral multiplets. In the parameter range where this mechanism is effective, the LHC can discover long-lived charged particles which were responsible for assimilating dark matter

  6. Data assimilation in integrated hydrological modelling

    DEFF Research Database (Denmark)

    Rasmussen, Jørn

    Integrated hydrological models are useful tools for water resource management and research, and advances in computational power and the advent of new observation types has resulted in the models generally becoming more complex and distributed. However, the models are often characterized by a high...... degree of parameterization which results in significant model uncertainty which cannot be reduced much due to observations often being scarce and often taking the form of point measurements. Data assimilation shows great promise for use in integrated hydrological models , as it allows for observations...... to be efficiently combined with models to improve model predictions, reduce uncertainty and estimate model parameters. In this thesis, a framework for assimilating multiple observation types and updating multiple components and parameters of a catchment scale integrated hydrological model is developed and tested...

  7. Probabilistic forecasting and Bayesian data assimilation

    CERN Document Server

    Reich, Sebastian

    2015-01-01

    In this book the authors describe the principles and methods behind probabilistic forecasting and Bayesian data assimilation. Instead of focusing on particular application areas, the authors adopt a general dynamical systems approach, with a profusion of low-dimensional, discrete-time numerical examples designed to build intuition about the subject. Part I explains the mathematical framework of ensemble-based probabilistic forecasting and uncertainty quantification. Part II is devoted to Bayesian filtering algorithms, from classical data assimilation algorithms such as the Kalman filter, variational techniques, and sequential Monte Carlo methods, through to more recent developments such as the ensemble Kalman filter and ensemble transform filters. The McKean approach to sequential filtering in combination with coupling of measures serves as a unifying mathematical framework throughout Part II. Assuming only some basic familiarity with probability, this book is an ideal introduction for graduate students in ap...

  8. Data assimilation techniques in modeling ocean processes

    Digital Repository Service at National Institute of Oceanography (India)

    Mahadevan, R.; Fernandes, A.A.; Naqvi, S.W.A.

    are usually called data analysis or assimilation. These homogeneous fields are prerequisites for various practical applications and theoretical studies. The fields produced by an analysi the one hand, they must be close to the observations.... The practical usefulness of variational methods for meteorological problems are pointed out very early by Sasaki (1955, 1958), but in spite of that these methods have not been fully utilized. Probably, the complex mathematical technicality of these methods...

  9. Improving operational flood forecasting through data assimilation

    Science.gov (United States)

    Rakovec, Oldrich; Weerts, Albrecht; Uijlenhoet, Remko; Hazenberg, Pieter; Torfs, Paul

    2010-05-01

    Accurate flood forecasts have been a challenging topic in hydrology for decades. Uncertainty in hydrological forecasts is due to errors in initial state (e.g. forcing errors in historical mode), errors in model structure and parameters and last but not least the errors in model forcings (weather forecasts) during the forecast mode. More accurate flood forecasts can be obtained through data assimilation by merging observations with model simulations. This enables to identify the sources of uncertainties in the flood forecasting system. Our aim is to assess the different sources of error that affect the initial state and to investigate how they propagate through hydrological models with different levels of spatial variation, starting from lumped models. The knowledge thus obtained can then be used in a data assimilation scheme to improve the flood forecasts. This study presents the first results of this framework and focuses on quantifying precipitation errors and its effect on discharge simulations within the Ourthe catchment (1600 km2), which is situated in the Belgian Ardennes and is one of the larger subbasins of the Meuse River. Inside the catchment, hourly rain gauge information from 10 different locations is available over a period of 15 years. Based on these time series, the bootstrap method has been applied to generate precipitation ensembles. These were then used to simulate the catchment's discharges at the outlet. The corresponding streamflow ensembles were further assimilated with observed river discharges to update the model states of lumped hydrological models (R-PDM, HBV) through Residual Resampling. This particle filtering technique is a sequential data assimilation method and takes no prior assumption of the probability density function for the model states, which in contrast to the Ensemble Kalman filter does not have to be Gaussian. Our further research will be aimed at quantifying and reducing the sources of uncertainty that affect the initial

  10. Effects of Latino children on their mothers' dietary intake and dietary behaviors: The role of children's acculturation and the mother-child acculturation gap.

    Science.gov (United States)

    Soto, Sandra H; Arredondo, Elva M; Marcus, Bess; Shakya, Holly B; Roesch, Scott; Ayala, Guadalupe X

    2017-10-01

    Research shows that acculturation is important to Latinas' dietary intake and related behaviors. Although evidence suggests children may also play a role, it remains unclear whether children's acculturation is related to mothers' dietary intake/behaviors. We examined the relationship between Latino children's acculturation and mothers' dietary intake/behaviors. We also examined the mother-child acculturation gap to identify dyad characteristics associated with mothers' diet. Baseline surveys were collected in 2010 from 314 Latino mother-child (7-13 years old) dyads of Mexican-origin enrolled in a family-based dietary intervention in Southern California, USA. Mother's daily intake of fruits, vegetables, and sugary beverages, percent of calories from fat, weekly away-from-home eating, and percent of weekly grocery dollars spent on fruits and vegetables were assessed via self-report. Mothers' and children's bidimensional acculturation were examined using acculturation groups (e.g., assimilated, bicultural) derived from Hispanic and non-Hispanic dimensions of language. We also assessed the acculturation gap between mothers and children with the a) difference in acculturation between mothers' and children's continuous acculturation scores and b) mother-child acculturation gap typologies (e.g., traditional mothers of assimilated children). Findings show that having an assimilated versus a bicultural child was negatively associated with mothers' vegetable intake and positively associated with mothers' sugary beverage intake, percent of calories from fat, and frequency of away-from-home eating, regardless of mothers' acculturation. Traditional mothers of assimilated children reported more sugary beverage intake, calories from fat, and more frequent away-from-home eating than traditional mothers of bicultural children. Results suggest that children's acculturation is associated with their mothers' dietary intake/behaviors and traditional mothers of assimilated children

  11. Comparison of Sequential and Variational Data Assimilation

    Science.gov (United States)

    Alvarado Montero, Rodolfo; Schwanenberg, Dirk; Weerts, Albrecht

    2017-04-01

    Data assimilation is a valuable tool to improve model state estimates by combining measured observations with model simulations. It has recently gained significant attention due to its potential in using remote sensing products to improve operational hydrological forecasts and for reanalysis purposes. This has been supported by the application of sequential techniques such as the Ensemble Kalman Filter which require no additional features within the modeling process, i.e. it can use arbitrary black-box models. Alternatively, variational techniques rely on optimization algorithms to minimize a pre-defined objective function. This function describes the trade-off between the amount of noise introduced into the system and the mismatch between simulated and observed variables. While sequential techniques have been commonly applied to hydrological processes, variational techniques are seldom used. In our believe, this is mainly attributed to the required computation of first order sensitivities by algorithmic differentiation techniques and related model enhancements, but also to lack of comparison between both techniques. We contribute to filling this gap and present the results from the assimilation of streamflow data in two basins located in Germany and Canada. The assimilation introduces noise to precipitation and temperature to produce better initial estimates of an HBV model. The results are computed for a hindcast period and assessed using lead time performance metrics. The study concludes with a discussion of the main features of each technique and their advantages/disadvantages in hydrological applications.

  12. Data assimilation and model evaluation experiment datasets

    Science.gov (United States)

    Lai, Chung-Cheng A.; Qian, Wen; Glenn, Scott M.

    1994-01-01

    The Institute for Naval Oceanography, in cooperation with Naval Research Laboratories and universities, executed the Data Assimilation and Model Evaluation Experiment (DAMEE) for the Gulf Stream region during fiscal years 1991-1993. Enormous effort has gone into the preparation of several high-quality and consistent datasets for model initialization and verification. This paper describes the preparation process, the temporal and spatial scopes, the contents, the structure, etc., of these datasets. The goal of DAMEE and the need of data for the four phases of experiment are briefly stated. The preparation of DAMEE datasets consisted of a series of processes: (1) collection of observational data; (2) analysis and interpretation; (3) interpolation using the Optimum Thermal Interpolation System package; (4) quality control and re-analysis; and (5) data archiving and software documentation. The data products from these processes included a time series of 3D fields of temperature and salinity, 2D fields of surface dynamic height and mixed-layer depth, analysis of the Gulf Stream and rings system, and bathythermograph profiles. To date, these are the most detailed and high-quality data for mesoscale ocean modeling, data assimilation, and forecasting research. Feedback from ocean modeling groups who tested this data was incorporated into its refinement. Suggestions for DAMEE data usages include (1) ocean modeling and data assimilation studies, (2) diagnosis and theoretical studies, and (3) comparisons with locally detailed observations.

  13. Coupling nutrient uptake and energy flow in headwater streams

    Energy Technology Data Exchange (ETDEWEB)

    Mulholland, Patrick J [ORNL; Fellows, Christine [Griffith University, Nathan, Queensland, Australia; Valett, H. Maurice [Virginia Polytechnic Institute and State University (Virginia Tech); Dahm, Cliff [University of New Mexico, Albuquerque; Thomas, Steve [University of Nebraska

    2006-08-01

    Nutrient cycling and energy flow in ecosystems are tightly linked through the metabolic processes of organisms. Greater uptake of inorganic nutrients is expected to be associated with higher rates of metabolism [gross primary production (GPP) and respiration (R)], due to assimilatory demand of both autotrophs and heterotrophs. However, relationships between uptake and metabolism should vary with the relative contribution of autochthonous and allochthonous sources of organic matter. To investigate the relationship between metabolism and nutrient uptake, we used whole-stream and benthic chamber methods to measure rates of nitrate-nitrogen (NO{sub 3}-N) uptake and metabolism in four headwater streams chosen to span a range of light availability and therefore differing rates of GPP and contributions of autochthonous carbon. We coupled whole-stream metabolism with measures of NO{sub 3}-N uptake conducted repeatedly over the same stream reach during both day and night, as well as incubating benthic sediments under both light and dark conditions. NO{sub 3}-N uptake was generally greater in daylight compared to dark conditions, and although day-night differences in whole-stream uptake were not significant, light-dark differences in benthic chambers were significant at three of the four sites. Estimates of N demand indicated that assimilation by photoautotrophs could account for the majority of NO{sub 3}-N uptake at the two sites with relatively open canopies. Contrary to expectations, photoautotrophs contributed substantially to NO{sub 3}-N uptake even at the two closed-canopy sites, which had low values of GPP/R and relied heavily on allochthonous carbon to fuel R.

  14. Inhibition of loading of 14C assimilate by p-chloromercuribenzenesulfonic acid

    International Nuclear Information System (INIS)

    Bourquin, S.; Bonnemain, J.L.; Delrot, S.

    1990-01-01

    The apoplast of mature leaves excised from broadbean (Vicia faba L.) plants was infiltrated with 2 millimolar p-chloromercuribenzenesulfonic acid (PCMBS) via the transpiration stream, and the ability of the tissues to take up sugars was tested. An infiltration time of 75 minutes was sufficient of obtain a maximal (75%) inhibition of exogenous [ 14 C]sucrose (1 millimolar) uptake. This infiltration affected neither CO 2 assimilation nor the transmembrane potential difference of leaf cells but strongly inhibited phloem loading of endogenous [ 14 C] assimilates. The study of the symplastic relations between the different cell types of the mature leaf showed that the density of the plasmodesmata is generally very low in comparison with other species investigated so far, particularly when considering the mesophyll/bundle sheath and the bundle sheath/phloem cells connections, as well as the connections of the transfer cell-sieve tube complex with the surrounding cells. These three successive barriers therefore strongly limit the possibilities of symplastic transit of the assimilates to the conducting cells. The comparison of the densities of plasmodesmata in an importing and an exporting leaf suggests that the maturation of the leaf is characterized by a marked symplastic isolation of the phloem, and, within the phloem itself, by the isolation of the conducting complex. As a consequence, these physiological and cytological data demonstrate the apoplastic nature of loading in the mature leaf of Vicia faba, this species undoubtedly presenting a typical model for apoplastic loading

  15. Dietary intervention in acne

    Science.gov (United States)

    Melnik, Bodo

    2012-01-01

    The purpose of this paper is to highlight the endocrine signaling of Western diet, a fundamental environmental factor involved in the pathogenesis of epidemic acne. Western nutrition is characterized by high calorie uptake, high glycemic load, high fat and meat intake, as well as increased consumption of insulin- and IGF-1-level elevating dairy proteins. Metabolic signals of Western diet are sensed by the nutrient-sensitive kinase, mammalian target of rapamycin complex 1 (mTORC1), which integrates signals of cellular energy, growth factors (insulin, IGF-1) and protein-derived signals, predominantly leucine, provided in high amounts by milk proteins and meat. mTORC1 activates SREBP, the master transcription factor of lipogenesis. Leucine stimulates mTORC1-SREBP signaling and leucine is directly converted by sebocytes into fatty acids and sterols for sebaceous lipid synthesis. Over-activated mTORC1 increases androgen hormone secretion and most likely amplifies androgen-driven mTORC1 signaling of sebaceous follicles. Testosterone directly activates mTORC1. Future research should investigate the effects of isotretinoin on sebocyte mTORC1 activity. It is conceivable that isotretinoin may downregulate mTORC1 in sebocytes by upregulation of nuclear levels of FoxO1. The role of Western diet in acne can only be fully appreciated when all stimulatory inputs for maximal mTORC1 activation, i.e., glucose, insulin, IGF-1 and leucine, are adequately considered. Epidemic acne has to be recognized as an mTORC1-driven disease of civilization like obesity, type 2 diabetes, cancer and neurodegenerative diseases. These new insights into Western diet-mediated mTORC1-hyperactivity provide a rational basis for dietary intervention in acne by attenuating mTORC1 signaling by reducing (1) total energy intake, (2) hyperglycemic carbohydrates, (3) insulinotropic dairy proteins and (4) leucine-rich meat and dairy proteins. The necessary dietary changes are opposed to the evolution of

  16. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... information about your thyroid’s size, shape, position and function that is often unattainable using other imaging procedures. ... thyroid uptake. It is a measurement of thyroid function, but does not involve imaging. Nuclear medicine is ...

  17. Thyroid Scan and Uptake

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    Full Text Available ... which are encased in metal and plastic and most often shaped like a box, attached to a ... will I experience during and after the procedure? Most thyroid scan and thyroid uptake procedures are painless. ...

  18. Thyroid Scan and Uptake

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    Full Text Available ... eat for several hours before your exam because eating can affect the accuracy of the uptake measurement. ... often unattainable using other imaging procedures. For many diseases, nuclear medicine scans yield the most useful information ...

  19. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... A thyroid scan is a type of nuclear medicine imaging. The radioactive iodine uptake test (RAIU) is ... thyroid function, but does not involve imaging. Nuclear medicine is a branch of medical imaging that uses ...

  20. Thyroid Scan and Uptake

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    Full Text Available ... Because nuclear medicine procedures are able to pinpoint molecular activity within the body, they offer the potential ... or imaging device that produces pictures and provides molecular information. The thyroid scan and thyroid uptake provide ...

  1. Thyroid Scan and Uptake

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    Full Text Available ... Actual scanning time for each thyroid uptake is five minutes or less. top of page What will ... diagnostic procedures have been used for more than five decades, and there are no known long-term ...

  2. Thyroid Scan and Uptake

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    Full Text Available ... top of page Additional Information and Resources RTAnswers.org Radiation Therapy for Head and Neck Cancer top ... Scan and Uptake Sponsored by Please note RadiologyInfo.org is not a medical facility. Please contact your ...

  3. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... When radiotracer is taken by mouth, in either liquid or capsule form, it is typically swallowed up ... radioactive iodine (I-123 or I-131) in liquid or capsule form to swallow. The thyroid uptake ...

  4. Thyroid Scan and Uptake

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    Full Text Available ... RAIU) is also known as a thyroid uptake. It is a measurement of thyroid function, but does ... they offer the potential to identify disease in its earliest stages as well as a patient’s immediate ...

  5. Thyroid Scan and Uptake

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    Full Text Available ... for several hours before your exam because eating can affect the accuracy of the uptake measurement. Jewelry ... small hand-held device resembling a microphone that can detect and measure the amount of the radiotracer ...

  6. Thyroid Scan and Uptake

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    Full Text Available ... of page What will I experience during and after the procedure? Most thyroid scan and thyroid uptake ... you otherwise, you may resume your normal activities after your nuclear medicine scan. If any special instructions ...

  7. Thyroid Scan and Uptake

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    Full Text Available ... scan and thyroid uptake provide information about the structure and function of the thyroid. The thyroid is ... computer, create pictures offering details on both the structure and function of organs and tissues in your ...

  8. Thyroid Scan and Uptake

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    Full Text Available ... eat for several hours before your exam because eating can affect the accuracy of the uptake measurement. ... its radioactivity over time. It may also pass out of your body through your urine or stool ...

  9. Thyroid Scan and Uptake

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    Full Text Available ... procedures within the last two months that used iodine-based contrast material. Your doctor will instruct you ... a type of nuclear medicine imaging. The radioactive iodine uptake test (RAIU) is also known as a ...

  10. Nitrogen-source preference in blueberry (Vaccinium sp.): Enhanced shoot nitrogen assimilation in response to direct supply of nitrate.

    Science.gov (United States)

    Alt, Douglas S; Doyle, John W; Malladi, Anish

    2017-09-01

    Blueberry (Vaccinium sp.) is thought to display a preference for the ammonium (NH 4 + ) form over the nitrate (NO 3 - ) form of inorganic nitrogen (N). This N-source preference has been associated with a generally low capacity to assimilate the NO 3 - form of N, especially within the shoot tissues. Nitrate assimilation is mediated by nitrate reductase (NR), a rate limiting enzyme that converts NO 3 - to nitrite (NO 2 - ). We investigated potential limitations of NO 3 - assimilation in two blueberry species, rabbiteye (Vaccinium ashei) and southern highbush (Vaccinium corymbosum) by supplying NO 3 - to the roots, leaf surface, or through the cut stem. Both species displayed relatively low but similar root uptake rates for both forms of inorganic N. Nitrate uptake through the roots transiently increased NR activity by up to 3.3-fold and root NR gene expression by up to 4-fold. However, supplying NO 3 - to the roots did not increase its transport in the xylem, nor did it increase NR activity in the leaves, indicating that the acquired N was largely assimilated or stored within the roots. Foliar application of NO 3 - increased leaf NR activity by up to 3.5-fold, but did not alter NO 3 - metabolism-related gene expression, suggesting that blueberries are capable of post translational regulation of NR activity in the shoots. Additionally, supplying NO 3 - to the cut ends of stems resulted in around a 5-fold increase in NR activity, a 10-fold increase in NR transcript accumulation, and up to a 195-fold increase in transcript accumulation of NITRITE REDUCTASE (NiR1) which codes for the enzyme catalyzing the conversion of NO 2 - to NH 4 + . These data indicate that blueberry shoots are capable of assimilating NO 3 - when it is directly supplied to these tissues. Together, these data suggest that limitations in the uptake and translocation of NO 3 - to the shoots may limit overall NO 3 - assimilation capacity in blueberry. Copyright © 2017 Elsevier GmbH. All rights reserved.

  11. Spatial dependence of color assimilation by the watercolor effect.

    Science.gov (United States)

    Devinck, Frédéric; Delahunt, Peter B; Hardy, Joseph L; Spillmann, Lothar; Werner, John S

    2006-01-01

    Color assimilation with bichromatic contours was quantified for spatial extents ranging from von Bezold-type color assimilation to the watercolor effect. The magnitude and direction of assimilative hue change was measured as a function of the width of a rectangular stimulus. Assimilation was quantified by hue cancellation. Large hue shifts were required to null the color of stimuli < or = 9.3 min of arc in width, with an exponential decrease for stimuli increasing up to 7.4 deg. When stimuli were viewed through an achromatizing lens, the magnitude of the assimilation effect was reduced for narrow stimuli, but not for wide ones. These results demonstrate that chromatic aberration may account, in part, for color assimilation over small, but not large, surface areas.

  12. Accelerating assimilation development for new observing systems using EFSO

    Science.gov (United States)

    Lien, Guo-Yuan; Hotta, Daisuke; Kalnay, Eugenia; Miyoshi, Takemasa; Chen, Tse-Chun

    2018-03-01

    To successfully assimilate data from a new observing system, it is necessary to develop appropriate data selection strategies, assimilating only the generally useful data. This development work is usually done by trial and error using observing system experiments (OSEs), which are very time and resource consuming. This study proposes a new, efficient methodology to accelerate the development using ensemble forecast sensitivity to observations (EFSO). First, non-cycled assimilation of the new observation data is conducted to compute EFSO diagnostics for each observation within a large sample. Second, the average EFSO conditionally sampled in terms of various factors is computed. Third, potential data selection criteria are designed based on the non-cycled EFSO statistics, and tested in cycled OSEs to verify the actual assimilation impact. The usefulness of this method is demonstrated with the assimilation of satellite precipitation data. It is shown that the EFSO-based method can efficiently suggest data selection criteria that significantly improve the assimilation results.

  13. Benefits and Pitfalls of GRACE Terrestrial Water Storage Data Assimilation

    Science.gov (United States)

    Girotto, Manuela

    2018-01-01

    Satellite observations of terrestrial water storage (TWS) from the Gravity Recovery and Climate Experiment (GRACE) mission have a coarse resolution in time (monthly) and space (roughly 150,000 sq km at midlatitudes) and vertically integrate all water storage components over land, including soil moisture and groundwater. Nonetheless, data assimilation can be used to horizontally downscale and vertically partition GRACE-TWS observations. This presentation illustrates some of the benefits and drawbacks of assimilating TWS observations from GRACE into a land surface model over the continental United States and India. The assimilation scheme yields improved skill metrics for groundwater compared to the no-assimilation simulations. A smaller impact is seen for surface and root-zone soil moisture. Further, GRACE observes TWS depletion associated with anthropogenic groundwater extraction. Results from the assimilation emphasize the importance of representing anthropogenic processes in land surface modeling and data assimilation systems.

  14. Testbed model and data assimilation for ARM

    International Nuclear Information System (INIS)

    Louis, J.F.

    1992-01-01

    The objectives of this contract are to further develop and test the ALFA (AER Local Forecast and Assimilation) model originally designed at AER for local weather prediction and apply it to three distinct but related purposes in connection with the Atmospheric Radiation Measurement (ARM) program: (a) to provide a testbed that simulates a global climate model in order to facilitate the development and testing of new cloud parametrizations and radiation models; (b) to assimilate the ARM data continuously at the scale of a climate model, using the adjoint method, thus providing the initial conditions and verification data for testing parameumtions; (c) to study the sensitivity of a radiation scheme to cloud parameters, again using the adjoint method, thus demonstrating the usefulness of the testbed model. The data assimilation will use a variational technique that minimizes the difference between the model results and the observation during the analysis period. The adjoint model is used to compute the gradient of a measure of the model errors with respect to nudging terms that are added to the equations to force the model output closer to the data. The radiation scheme that will be included in the basic ALFA model makes use of a gen two-stream approximation, and is designed for vertically inhonogeneous, multiple-scattering atmospheres. The sensitivity of this model to the definition of cloud parameters will be studied. The adjoint technique will also be used to compute the sensitivities. This project is designed to provide the Science Team members with the appropriate tools and modeling environment for proper testing and tuning of new radiation models and cloud parametrization schemes

  15. Variational data assimilation using targetted random walks

    KAUST Repository

    Cotter, S. L.

    2011-02-15

    The variational approach to data assimilation is a widely used methodology for both online prediction and for reanalysis. In either of these scenarios, it can be important to assess uncertainties in the assimilated state. Ideally, it is desirable to have complete information concerning the Bayesian posterior distribution for unknown state given data. We show that complete computational probing of this posterior distribution is now within the reach in the offline situation. We introduce a Markov chain-Monte Carlo (MCMC) method which enables us to directly sample from the Bayesian posterior distribution on the unknown functions of interest given observations. Since we are aware that these methods are currently too computationally expensive to consider using in an online filtering scenario, we frame this in the context of offline reanalysis. Using a simple random walk-type MCMC method, we are able to characterize the posterior distribution using only evaluations of the forward model of the problem, and of the model and data mismatch. No adjoint model is required for the method we use; however, more sophisticated MCMC methods are available which exploit derivative information. For simplicity of exposition, we consider the problem of assimilating data, either Eulerian or Lagrangian, into a low Reynolds number flow in a two-dimensional periodic geometry. We will show that in many cases it is possible to recover the initial condition and model error (which we describe as unknown forcing to the model) from data, and that with increasing amounts of informative data, the uncertainty in our estimations reduces. © 2011 John Wiley & Sons, Ltd.

  16. Elevated CO2 plus chronic warming reduce nitrogen uptake and levels or activities of nitrogen-uptake and -assimilatory proteins in tomato roots.

    Science.gov (United States)

    Jayawardena, Dileepa M; Heckathorn, Scott A; Bista, Deepesh R; Mishra, Sasmita; Boldt, Jennifer K; Krause, Charles R

    2017-03-01

    Atmospheric CO 2 enrichment is expected to often benefit plant growth, despite causing global warming and nitrogen (N) dilution in plants. Most plants primarily procure N as inorganic nitrate (NO 3 - ) or ammonium (NH 4 + ), using membrane-localized transport proteins in roots, which are key targets for improving N use. Although interactive effects of elevated CO 2 , chronic warming and N form on N relations are expected, these have not been studied. In this study, tomato (Solanum lycopersicum) plants were grown at two levels of CO 2 (400 or 700 ppm) and two temperature regimes (30 or 37°C), with NO 3 - or NH 4 + as the N source. Elevated CO 2 plus chronic warming severely inhibited plant growth, regardless of N form, while individually they had smaller effects on growth. Although %N in roots was similar among all treatments, elevated CO 2 plus warming decreased (1) N-uptake rate by roots, (2) total protein concentration in roots, indicating an inhibition of N assimilation and (3) shoot %N, indicating a potential inhibition of N translocation from roots to shoots. Under elevated CO 2 plus warming, reduced NO 3 - -uptake rate per g root was correlated with a decrease in the concentration of NO 3 - -uptake proteins per g root, reduced NH 4 + uptake was correlated with decreased activity of NH 4 + -uptake proteins and reduced N assimilation was correlated with decreased concentration of N-assimilatory proteins. These results indicate that elevated CO 2 and chronic warming can act synergistically to decrease plant N uptake and assimilation; hence, future global warming may decrease both plant growth and food quality (%N). © 2016 Scandinavian Plant Physiology Society.

  17. Characterization of the sulfate uptake and assimilation pathway from Xanthomonas citri - targets for bacterial growth inhibitors

    Energy Technology Data Exchange (ETDEWEB)

    Tambascia, C.; Balan, A. [Laboratorio Nacional de Biociencias - LNBIO, Campinas, SP (Brazil)

    2012-07-01

    Full text: Microorganisms require sulfur for growth and obtain it either for inorganic sulfate or organosulfur compounds. ATP-Binding Cassete (SulT family) or major facilitator superfamily-type (SulP) transporters are responsible for the sulfate transport into the cell. In Xanthomonas citri, the phytopathogenic bacterium that causes the canker citrus disease, there are no reports related to the importance of these transporters during in vitro or in vivo infection. We identified in X. citri genome all the genes that belong to the well-characterized cys regulon from Escherichia coli and Salmonella typhimurium, which includes three ABC transporters and all the enzymes necessary for sulfate oxide reduction to sulfide and cysteine. Once these genes have been shown to be extremely important for bacteria growth and development in different environments, we chose the sbpcysWUA and cysDNCHIJG operons, which encodes the ABC inorganic sulfate ABC transporter and all the enzymes necessary for conversion of sulfate in cysteine, respectively. As a step for crystallization trials and resolution of their tridimensional structures, the referred genes were amplified and cloned into the cloning vector pGEM T-easy. In addition, using bioinformatics tools and molecular modeling we characterized all the protein functions as well as built tridimensional models of their structure for determination of the active sites. The importance of each protein is discussed aiming the discovery of a good target for development of inhibitors that could block the bacterium growth. (author)

  18. Characterization of the sulfate uptake and assimilation pathway from Xanthomonas citri - targets for bacterial growth inhibitors

    International Nuclear Information System (INIS)

    Tambascia, C.; Balan, A.

    2012-01-01

    Full text: Microorganisms require sulfur for growth and obtain it either for inorganic sulfate or organosulfur compounds. ATP-Binding Cassete (SulT family) or major facilitator superfamily-type (SulP) transporters are responsible for the sulfate transport into the cell. In Xanthomonas citri, the phytopathogenic bacterium that causes the canker citrus disease, there are no reports related to the importance of these transporters during in vitro or in vivo infection. We identified in X. citri genome all the genes that belong to the well-characterized cys regulon from Escherichia coli and Salmonella typhimurium, which includes three ABC transporters and all the enzymes necessary for sulfate oxide reduction to sulfide and cysteine. Once these genes have been shown to be extremely important for bacteria growth and development in different environments, we chose the sbpcysWUA and cysDNCHIJG operons, which encodes the ABC inorganic sulfate ABC transporter and all the enzymes necessary for conversion of sulfate in cysteine, respectively. As a step for crystallization trials and resolution of their tridimensional structures, the referred genes were amplified and cloned into the cloning vector pGEM T-easy. In addition, using bioinformatics tools and molecular modeling we characterized all the protein functions as well as built tridimensional models of their structure for determination of the active sites. The importance of each protein is discussed aiming the discovery of a good target for development of inhibitors that could block the bacterium growth. (author)

  19. Data assimilation strategies for volcano geodesy

    Science.gov (United States)

    Zhan, Yan; Gregg, Patricia M.

    2017-09-01

    Ground deformation observed using near-real time geodetic methods, such as InSAR and GPS, can provide critical information about the evolution of a magma chamber prior to volcanic eruption. Rapid advancement in numerical modeling capabilities has resulted in a number of finite element models targeted at better understanding the connection between surface uplift associated with magma chamber pressurization and the potential for volcanic eruption. Robust model-data fusion techniques are necessary to take full advantage of the numerical models and the volcano monitoring observations currently available. In this study, we develop a 3D data assimilation framework using the Ensemble Kalman Filter (EnKF) approach in order to combine geodetic observations of surface deformation with geodynamic models to investigate volcanic unrest. The EnKF sequential assimilation method utilizes disparate data sets as they become available to update geodynamic models of magma reservoir evolution. While the EnKF has been widely applied in hydrologic and climate modeling, the adaptation for volcano monitoring is in its initial stages. As such, our investigation focuses on conducting a series of sensitivity tests to optimize the EnKF for volcano applications and on developing specific strategies for assimilation of geodetic data. Our numerical experiments illustrate that the EnKF is able to adapt well to the spatial limitations posed by GPS data and the temporal limitations of InSAR, and that specific strategies can be adopted to enhance EnKF performance to improve model forecasts. Specifically, our numerical experiments indicate that: (1) incorporating additional iterations of the EnKF analysis step is more efficient than increasing the number of ensemble members; (2) the accuracy of the EnKF results are not affected by initial parameter assumptions; (3) GPS observations near the center of uplift improve the quality of model forecasts; (4) occasionally shifting continuous GPS stations to

  20. Data assimilation approaches in the EURANOS project

    DEFF Research Database (Denmark)

    Kaiser, J.C.; Gering, F.; Astrup, Poul

    2010-01-01

    -nuclides in urban areas the results of demonstration exercises are presented here. With the data assimilation module of the RIMPUFF dispersion code, predictions of the gamma dose rate are corrected with simulated readings of fixed detector stations. Using the DA capabilities of the IAMM package for mapping...... the radioactive contamination in inhabited areas, predictions of a large scale deposition model have been combined with hypothetical measurements on a local scale. In both examples the accuracy of the model predictions has been improved and the uncertainties have been reduced. © EDP Sciences, 2010...

  1. Improving carbon model phenology using data assimilation

    Science.gov (United States)

    Exrayat, Jean-François; Smallman, T. Luke; Bloom, A. Anthony; Williams, Mathew

    2015-04-01

    Carbon cycle dynamics is significantly impacted by ecosystem phenology, leading to substantial seasonal and inter-annual variation in the global carbon balance. Representing inter-annual variability is key for predicting the response of the terrestrial ecosystem to climate change and disturbance. Existing terrestrial ecosystem models (TEMs) often struggle to accurately simulate observed inter-annual variability. TEMs often use different phenological models based on plant functional type (PFT) assumptions. Moreover, due to a high level of computational overhead in TEMs they are unable to take advantage of globally available datasets to calibrate their models. Here we describe the novel CARbon DAta MOdel fraMework (CARDAMOM) for data assimilation. CARDAMOM is used to calibrate the Data Assimilation Linked Ecosystem Carbon version 2 (DALEC2) model using Bayes' Theorem within a Metropolis Hastings - Markov Chain Monte Carlo (MH-MCMC). CARDAMOM provides a framework which combines knowledge from observations, such as remotely sensed LAI, and heuristic information in the form of Ecological and Dynamical Constraints (EDCs). The EDCs are representative of real world processes and constrain parameter interdependencies and constrain carbon dynamics. We used CARDAMOM to bring together globally spanning datasets of LAI and the DALEC2 and DALEC2-GSI models. These analyses allow us to investigate the sensitivity ecosystem processes to the representation of phenology. DALEC2 uses an analytically solved model of phenology which is invariant between years. In contrast DALEC2-GSI uses a growing season index (GSI) calculated as a function of temperature, vapour pressure deficit (VPD) and photoperiod to calculate bud-burst and leaf senescence, allowing the model to simulate inter-annual variability in response to climate. Neither model makes any PFT assumptions about the phenological controls of a given ecosystem, allowing the data alone to determine the impact of the meteorological

  2. First assimilations of COSMIC radio occultation data into the Electron Density Assimilative Model (EDAM

    Directory of Open Access Journals (Sweden)

    M. J. Angling

    2008-02-01

    Full Text Available Ground based measurements of slant total electron content (TEC can be assimilated into ionospheric models to produce 3-D representations of ionospheric electron density. The Electron Density Assimilative Model (EDAM has been developed for this purpose. Previous tests using EDAM and ground based data have demonstrated that the information on the vertical structure of the ionosphere is limited in this type of data. The launch of the COSMIC satellite constellation provides the opportunity to use radio occultation data which has more vertical information. EDAM assimilations have been run for three time periods representing quiet, moderate and disturbed geomagnetic conditions. For each run, three data sets have been ingested – only ground based data, only COSMIC data and both ground based and COSMIC data. The results from this preliminary study show that both ground and space based data are capable of improving the representation of the vertical structure of the ionosphere. However, the analysis is limited by the incomplete deployment of the COSMIC constellation and the use of auto-scaled ionosonde data. The first of these can be addressed by repeating this type of study once full deployment has been achieved. The latter requires the manual scaling of ionosonde data; ideally an agreed data set would be scaled and made available to the community to facilitate comparative testing of assimilative models.

  3. Development of airborne remote sensing data assimilation system

    International Nuclear Information System (INIS)

    Gudu, B R; Bi, H Y; Wang, H Y; Qin, S X; Ma, J W

    2014-01-01

    In this paper, an airborne remote sensing data assimilation system for China Airborne Remote Sensing System is introduced. This data assimilation system is composed of a land surface model, data assimilation algorithms, observation data and fundamental parameters forcing the land surface model. In this data assimilation system, Variable Infiltration Capacity hydrologic model is selected as the land surface model, which also serves as the main framework of the system. Three-dimensional variation algorithm, four-dimensional variation algorithms, ensemble Kalman filter and Particle filter algorithms are integrated in this system. Observation data includes ground observations and remotely sensed data. The fundamental forcing parameters include soil parameters, vegetation parameters and the meteorological data

  4. Boundary Conditions, Data Assimilation, and Predictability in Coastal Ocean Models

    National Research Council Canada - National Science Library

    Samelson, Roger M; Allen, John S; Egbert, Gary D; Kindle, John C; Snyder, Chris

    2007-01-01

    ...: The specific objectives of this research are to determine the impact on coastal ocean circulation models of open ocean boundary conditions from Global Ocean Data Assimilation Experiment (GODAE...

  5. Assimilation of enterprise technology upgrades: a factor-based study

    Science.gov (United States)

    Claybaugh, Craig C.; Ramamurthy, Keshavamurthy; Haseman, William D.

    2017-02-01

    The purpose of this study is to gain a better understanding of the differences in the propensity of firms to initiate and commit to the assimilation of an enterprise technology upgrade. A research model is proposed that examines the influences that four technological and four organisational factors have on predicting assimilation of a technology upgrade. Results show that firms with a greater propensity to assimilate the new enterprise resource planning (ERP) version have a higher assessment of relative advantage, IS technical competence, and the strategic role of IS relative to those firms with a lower propensity to assimilate a new ERP version.

  6. Daily dietary intake

    International Nuclear Information System (INIS)

    Dang, H.S.

    1998-01-01

    As part of study on ''Reference Asian Man'' to strengthen radiation protection, the data on the dietary consumption patterns of the Asian region were collected. Eight provided dietary data - Bangladesh, China, India, Indonesia, Japan, Pakistan, Philippines, and Viet Nam. Whereas the dietary information from Bangladesh, Indonesia, Pakistan and Viet Nam are preliminary in nature, the dietary information from China, India, Japan and Philippines, on the other hand, is quite substantial. The population of the countries from which sufficient dietary data are available represents more than 2/3 of the population of the Asian region. The details of the individual data available on dietary parameters from different Asian countries are listed below

  7. Data assimilation and PWR primary measurement

    International Nuclear Information System (INIS)

    Mercier, Thibaud

    2015-01-01

    A Pressurized Water Reactor (PWR) Reactor Coolant System (RCS) is a highly complex physical process: heterogeneous power, flow and temperature distributions are difficult to be accurately measured, since instrumentations are limited in number, thus leading to the relevant safety and protection margins. EDF R and D is seeking to assess the potential benefits of applying Data Assimilation to a PWR's RCS (Reactor Coolant System) measurements, in order to improve the estimators for parameters of a reactor's operating setpoint, i.e. improving accuracy and reducing uncertainties and biases of measured RCS parameters. In this thesis, we define a 0D semi-empirical model for RCS, satisfying the description level usually chosen by plant operators, and construct a Monte-Carlo Method (inspired from Ensemble Methods) in order to use this model with Data Assimilation tools. We apply this method on simulated data in order to assess the reduction of uncertainties on key parameters: results are beyond expectations, however strong hypothesis are required, implying a careful preprocessing of input data. (author)

  8. Data Assimilation by delay-coordinate nudging

    Science.gov (United States)

    Pazo, Diego; Lopez, Juan Manuel; Carrassi, Alberto

    2016-04-01

    A new nudging method for data assimilation, delay-coordinate nudging, is presented. Delay-coordinate nudging makes explicit use of present and past observations in the formulation of the forcing driving the model evolution at each time-step. Numerical experiments with a low order chaotic system show that the new method systematically outperforms standard nudging in different model and observational scenarios, also when using an un-optimized formulation of the delay-nudging coefficients. A connection between the optimal delay and the dominant Lyapunov exponent of the dynamics is found based on heuristic arguments and is confirmed by the numerical results, providing a guideline for the practical implementation of the algorithm. Delay-coordinate nudging preserves the easiness of implementation, the intuitive functioning and the reduced computational cost of the standard nudging, making it a potential alternative especially in the field of seasonal-to-decadal predictions with large Earth system models that limit the use of more sophisticated data assimilation procedures.

  9. Turbulent viscosity optimized by data assimilation

    Directory of Open Access Journals (Sweden)

    Y. Leredde

    Full Text Available As an alternative approach to classical turbulence modelling using a first or second order closure, the data assimilation method of optimal control is applied to estimate a time and space-dependent turbulent viscosity in a three-dimensional oceanic circulation model. The optimal control method, described for a 3-D primitive equation model, involves the minimization of a cost function that quantifies the discrepancies between the simulations and the observations. An iterative algorithm is obtained via the adjoint model resolution. In a first experiment, a k + L model is used to simulate the one-dimensional development of inertial oscillations resulting from a wind stress at the sea surface and with the presence of a halocline. These results are used as synthetic observations to be assimilated. The turbulent viscosity is then recovered without the k + L closure, even with sparse and noisy observations. The problems of controllability and of the dimensions of the control are then discussed. A second experiment consists of a two-dimensional schematic simulation. A 2-D turbulent viscosity field is estimated from data on the initial and final states of a coastal upwelling event.

    Key words. Oceanography: general (numerical modelling · Oceanography: physical (turbulence · diffusion · and mixing processes

  10. Uptake of radiocarbon from plant rhizosphere based on geological disposal of TRU waste. Root-uptake of radiocarbon carbon derived from acetic acid

    International Nuclear Information System (INIS)

    Ogiyama, Shinichi; Takeda, Hiroshi; Uchida, Shigeo; Suzuki, Hiroyuki; Inubushi, Kazuyuki

    2008-01-01

    Hydroponic experiments were conducted to examine root-uptake of 14 C in the form of acetic acid by 3 kinds of plants (marigold, tall fescue, and paddy rice) based on buried transuranic (TRU) waste disposal. Also, chamber experiment was conducted to examine loss of 14 C as vaporized carbon dioxide (CO 2 ) from the experimental tessera (spatially heterogeneous environment). The distribution of radioactivity in the plant, mediums, and carbon dioxide ( 14 CO 2 ) in the chamber were determined, and the distribution of 14 C in the plant was visualized by the autoradiography. The plants absorbed and assimilated 14 C through the roots. The amount of 14 C in marigold and tall fescue were higher than that of paddy rice. However, the amounts of 14 C-acetic acid absorbed by all the plants through their roots were considered to be very small. More so, 14 CO 2 gas was released from the culture solution to the atmosphere; however, it was not enough for the plant to perform photosynthesis. Assimilation of 14 C in the plant shoots would be because of 14 C movement of inorganic forms such as CO 2 and HCO 3 - via the roots. Thus, the results indicated that the plants absorbed 14 C through the roots and assimilated it into the shoots or edible parts not because of uptake of 14 C-acetic acid but because of uptake of 14 C in inorganic forms. (author)

  11. Impact of Assimilation on Heavy Rainfall Simulations Using WRF Model: Sensitivity of Assimilation Results to Background Error Statistics

    Science.gov (United States)

    Rakesh, V.; Kantharao, B.

    2017-03-01

    Data assimilation is considered as one of the effective tools for improving forecast skill of mesoscale models. However, for optimum utilization and effective assimilation of observations, many factors need to be taken into account while designing data assimilation methodology. One of the critical components that determines the amount and propagation observation information into the analysis, is model background error statistics (BES). The objective of this study is to quantify how BES in data assimilation impacts on simulation of heavy rainfall events over a southern state in India, Karnataka. Simulations of 40 heavy rainfall events were carried out using Weather Research and Forecasting Model with and without data assimilation. The assimilation experiments were conducted using global and regional BES while the experiment with no assimilation was used as the baseline for assessing the impact of data assimilation. The simulated rainfall is verified against high-resolution rain-gage observations over Karnataka. Statistical evaluation using several accuracy and skill measures shows that data assimilation has improved the heavy rainfall simulation. Our results showed that the experiment using regional BES outperformed the one which used global BES. Critical thermo-dynamic variables conducive for heavy rainfall like convective available potential energy simulated using regional BES is more realistic compared to global BES. It is pointed out that these results have important practical implications in design of forecast platforms while decision-making during extreme weather events

  12. Root Ideotype Influences Nitrogen Transport and Assimilation in Maize

    Directory of Open Access Journals (Sweden)

    Julie Dechorgnat

    2018-04-01

    Full Text Available Maize (Zea mays, L. yield is strongly influenced by external nitrogen inputs and their availability in the soil solution. Overuse of nitrogen-fertilizers can have detrimental ecological consequences through increased nitrogen pollution of water and the release of the potent greenhouse gas, nitrous oxide. To improve yield and overall nitrogen use efficiency (NUE, a deeper understanding of nitrogen uptake and utilization is required. This study examines the performance of two contrasting maize inbred lines, B73 and F44. F44 was selected in Florida on predominantly sandy acidic soils subject to nitrate leaching while B73 was selected in Iowa on rich mollisol soils. Transcriptional, enzymatic and nitrogen transport analytical tools were used to identify differences in their N absorption and utilization capabilities. Our results show that B73 and F44 differ significantly in their genetic, enzymatic, and biochemical root nitrogen transport and assimilatory pathways. The phenotypes show a strong genetic relationship linked to nitrogen form, where B73 showed a greater capacity for ammonium transport and assimilation whereas F44 preferred nitrate. The contrasting phenotypes are typified by differences in root system architecture (RSA developed in the presence of both nitrate and ammonium. F44 crown roots were longer, had a higher surface area and volume with a greater lateral root number and density than B73. In contrast, B73 roots (primary, seminal, and crown were more abundant but lacked the defining features of the F44 crown roots. An F1 hybrid between B73 and F44 mirrored the B73 nitrogen specificity and root architecture phenotypes, indicating complete dominance of the B73 inbred. This study highlights the important link between RSA and nitrogen management and why both variables need to be tested together when defining NUE improvements in any selection program.

  13. A data assimilating model for estimating Southern Ocean biogeochemistry

    Science.gov (United States)

    Verdy, A.; Mazloff, M. R.

    2017-09-01

    A Biogeochemical Southern Ocean State Estimate (B-SOSE) is introduced that includes carbon and oxygen fields as well as nutrient cycles. The state estimate is constrained with observations while maintaining closed budgets and obeying dynamical and thermodynamic balances. Observations from profiling floats, shipboard data, underway measurements, and satellites are used for assimilation. The years 2008-2012 are chosen due to the relative abundance of oxygen observations from Argo floats during this time. The skill of the state estimate at fitting the data is assessed. The agreement is best for fields that are constrained with the most observations, such as surface pCO2 in Drake Passage (44% of the variance captured) and oxygen profiles (over 60% of the variance captured at 200 and 1000 m). The validity of adjoint method optimization for coupled physical-biogeochemical state estimation is demonstrated with a series of gradient check experiments. The method is shown to be mature and ready to synthesize in situ biogeochemical observations as they become more available. Documenting the B-SOSE configuration and diagnosing the strengths and weaknesses of the solution informs usage of this product as both a climate baseline and as a way to test hypotheses. Transport of Intermediate Waters across 32°S supplies significant amounts of nitrate to the Atlantic Ocean (5.57 ± 2.94 Tmol yr-1) and Indian Ocean (5.09 ± 3.06 Tmol yr-1), but much less nitrate reaches the Pacific Ocean (1.78 ± 1.91 Tmol yr-1). Estimates of air-sea carbon dioxide fluxes south of 50°S suggest a mean uptake of 0.18 Pg C/yr for the time period analyzed.

  14. Light-dark regulation of sulfate assimilation in Lemna minor L. in the presence of o-acetyl-l-serine

    International Nuclear Information System (INIS)

    Brunold, C.; Neuenschwander, U.

    1989-01-01

    The effect of light removal and addition of O-acetyl-l-serine (OAS) on sulfate assimilation in Lemna minor L. was analyzed by measuring the extractable activity of adenosine 5'-phosphosulfate sulfotransferase (APSSTase) and the in vivo incorporation of 35 SO 4 2- . After removal of light APSSTase activity decreased to 10% within 24 h in the absence and to 50% in the presence of OAS. Within 24 h total 35 SO 4 2- uptake decreased to 60% without and increased to 130% with OAS compared to light controls. The incorporation of 35 S into cysteine increased 2 times without and 15 times with OAS, labelling of glutathione decreased to 65% and increased to 140%, the one of the protein fraction decreased to 30% and to 20% of the light control in the absence and presence of OAS. Our results indicate that OAS has a regulatory function on the assimilation of sulfate and that protein synthesis is inhibited in the dark

  15. Children and Dietary Supplements

    Science.gov (United States)

    ... Clinical Digest for health professionals Children and Dietary Supplements Share: September 2012 © Matthew Lester Research has shown that many children use herbs and other dietary supplements. However, there are little data available on their ...

  16. Thyroid uptake software

    International Nuclear Information System (INIS)

    Alonso, Dolores; Arista, Eduardo

    2003-01-01

    The DETEC-PC software was developed as a complement to a measurement system (hardware) able to perform Iodine Thyroid Uptake studies. The software was designed according to the principles of Object oriented programming using C++ language. The software automatically fixes spectrometric measurement parameters and besides patient measurement also performs statistical analysis of a batch of samples. It possesses a PARADOX database with all information of measured patients and a help system with the system options and medical concepts related to the thyroid uptake study

  17. Data assimilation in the decision support system RODOS

    DEFF Research Database (Denmark)

    Rojas-Palma, C.; Madsen, H.; Gering, F.

    2003-01-01

    . The process of combining model predictions and observations, usually referred to as data assimilation, is described in this article within the framework of the real time on-line decision support system (RODOS) for off-site nuclear emergency management in Europe. Data assimilation capabilities, based on Kalman...

  18. Assimilation as Attraction: Computing Distance, Similarity, and Locality in Phonology

    Science.gov (United States)

    Wayment, Adam

    2009-01-01

    This dissertation explores similarity effects in assimilation, proposing an Attraction Framework to analyze cases of parasitic harmony where a trigger-target pair only results in harmony if the trigger and target agree on other features. Attraction provides a natural model of these effects by relating the pressure for assimilation to the…

  19. Glucose uptake and its effect on gene expression in prochlorococcus.

    Directory of Open Access Journals (Sweden)

    Guadalupe Gómez-Baena

    Full Text Available The marine cyanobacteria Prochlorococcus have been considered photoautotrophic microorganisms, although the utilization of exogenous sugars has never been specifically addressed in them. We studied glucose uptake in different high irradiance- and low irradiance-adapted Prochlorococcus strains, as well as the effect of glucose addition on the expression of several glucose-related genes. Glucose uptake was measured by adding radiolabelled glucose to Prochlorococcus cultures, followed by flow cytometry coupled with cell sorting in order to separate Prochlorococcus cells from bacterial contaminants. Sorted cells were recovered by filtration and their radioactivity measured. The expression, after glucose addition, of several genes (involved in glucose metabolism, and in nitrogen assimilation and its regulation was determined in the low irradiance-adapted Prochlorococcus SS120 strain by semi-quantitative real time RT-PCR, using the rnpB gene as internal control. Our results demonstrate for the first time that the Prochlorococcus strains studied in this work take up glucose at significant rates even at concentrations close to those found in the oceans, and also exclude the possibility of this uptake being carried out by eventual bacterial contaminants, since only Prochlorococcus cells were used for radioactivity measurements. Besides, we show that the expression of a number of genes involved in glucose utilization (namely zwf, gnd and dld, encoding glucose-6-phosphate dehydrogenase, 6-phosphogluconate dehydrogenase and lactate dehydrogenase, respectively is strongly increased upon glucose addition to cultures of the SS120 strain. This fact, taken together with the magnitude of the glucose uptake, clearly indicates the physiological importance of the phenomenon. Given the significant contribution of Prochlorococcus to the global primary production, these findings have strong implications for the understanding of the phytoplankton role in the carbon

  20. Initializing carbon cycle predictions from the Community Land Model by assimilating global biomass observations

    Science.gov (United States)

    Fox, A. M.; Hoar, T. J.; Smith, W. K.; Moore, D. J.

    2017-12-01

    The locations and longevity of terrestrial carbon sinks remain uncertain, however it is clear that in order to predict long-term climate changes the role of the biosphere in surface energy and carbon balance must be understood and incorporated into earth system models (ESMs). Aboveground biomass, the amount of carbon stored in vegetation, is a key component of the terrestrial carbon cycle, representing the balance of uptake through gross primary productivity (GPP), losses from respiration, senescence and mortality over hundreds of years. The best predictions of current and future land-atmosphere fluxes are likely from the integration of process-based knowledge contained in models and information from observations of changes in carbon stocks using data assimilation (DA). By exploiting long times series, it is possible to accurately detect variability and change in carbon cycle dynamics through monitoring ecosystem states, for example biomass derived from vegetation optical depth (VOD), and use this information to initialize models before making predictions. To make maximum use of information about the current state of global ecosystems when using models we have developed a system that combines the Community Land Model (CLM) with the Data Assimilation Research Testbed (DART), a community tool for ensemble DA. This DA system is highly innovative in its complexity, completeness and capabilities. Here we described a series of activities, using both Observation System Simulation Experiments (OSSEs) and real observations, that have allowed us to quantify the potential impact of assimilating VOD data into CLM-DART on future land-atmosphere fluxes. VOD data are particularly suitable to use in this activity due to their long temporal coverage and appropriate scale when combined with CLM, but their absolute values rely on many assumptions. Therefore, we have had to assess the implications of the VOD retrieval algorithms, with an emphasis on detecting uncertainty due to

  1. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available Toggle navigation Test/Treatment Patient Type Screening/Wellness Disease/Condition Safety En Español More Info Images/Videos About Us News Physician Resources Professions Site Index A-Z Thyroid Scan and Uptake ...

  2. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... information. The thyroid scan and thyroid uptake provide information about the structure and function of the thyroid. The thyroid is a gland in the neck that controls metabolism , a chemical process that regulates the rate at which the body ...

  3. Radioactive uptake by plants

    Energy Technology Data Exchange (ETDEWEB)

    Horak, O

    1986-01-01

    The fundamentals of radionuclide uptake by plants, both by leaves and roots are presented. Iodine, cesium, strontium and ruthenium are considered and a table of the measured concentrations in several agricultural plants shortly after the Chernobyl accident is presented. Another table gives the Cs and Sr transfer factors soil plants for some plants. By using them estimates of future burden can be obtained.

  4. Thyroid Scan and Uptake

    Medline Plus

    Full Text Available ... type your comment or suggestion into the following text box: Comment: E-mail: Area code: Phone no: ... of a typical probe counter used for thyroid uptake exams. The patient sits with the camera directed at the neck for five minutes, and then the leg for ...

  5. Thyroid Scan and Uptake

    Science.gov (United States)

    ... type your comment or suggestion into the following text box: Comment: E-mail: Area code: Phone no: ... of a typical probe counter used for thyroid uptake exams. The patient sits with the camera directed at the neck for five minutes, and then the leg for ...

  6. The dynamic radiation environment assimilation model (DREAM)

    International Nuclear Information System (INIS)

    Reeves, Geoffrey D.; Koller, Josef; Tokar, Robert L.; Chen, Yue; Henderson, Michael G.; Friedel, Reiner H.

    2010-01-01

    The Dynamic Radiation Environment Assimilation Model (DREAM) is a 3-year effort sponsored by the US Department of Energy to provide global, retrospective, or real-time specification of the natural and potential nuclear radiation environments. The DREAM model uses Kalman filtering techniques that combine the strengths of new physical models of the radiation belts with electron observations from long-term satellite systems such as GPS and geosynchronous systems. DREAM includes a physics model for the production and long-term evolution of artificial radiation belts from high altitude nuclear explosions. DREAM has been validated against satellites in arbitrary orbits and consistently produces more accurate results than existing models. Tools for user-specific applications and graphical displays are in beta testing and a real-time version of DREAM has been in continuous operation since November 2009.

  7. Transgenic plants that exhibit enhanced nitrogen assimilation

    Science.gov (United States)

    Coruzzi, Gloria M.; Brears, Timothy

    1999-01-01

    The present invention relates to a method for producing plants with improved agronomic and nutritional traits. Such traits include enhanced nitrogen assimilatory and utilization capacities, faster and more vigorous growth, greater vegetative and reproductive yields, and enriched or altered nitrogen content in vegetative and reproductive parts. More particularly, the invention relates to the engineering of plants modified to have altered expression of key enzymes in the nitrogen assimilation and utilization pathways. In one embodiment of the present invention, the desired altered expression is accomplished by engineering the plant for ectopic overexpression of one of more the native or modified nitrogen assimilatory enzymes. The invention also has a number of other embodiments, all of which are disclosed herein.

  8. Assimilating data into open ocean tidal models

    Science.gov (United States)

    Kivman, Gennady A.

    The problem of deriving tidal fields from observations by reason of incompleteness and imperfectness of every data set practically available has an infinitely large number of allowable solutions fitting the data within measurement errors and hence can be treated as ill-posed. Therefore, interpolating the data always relies on some a priori assumptions concerning the tides, which provide a rule of sampling or, in other words, a regularization of the ill-posed problem. Data assimilation procedures used in large scale tide modeling are viewed in a common mathematical framework as such regularizations. It is shown that they all (basis functions expansion, parameter estimation, nudging, objective analysis, general inversion, and extended general inversion), including those (objective analysis and general inversion) originally formulated in stochastic terms, may be considered as utilizations of one of the three general methods suggested by the theory of ill-posed problems. The problem of grid refinement critical for inverse methods and nudging is discussed.

  9. Nitrogen uptake efficiency of irrigated wheat in Egypt

    International Nuclear Information System (INIS)

    Abdel Monem, M.A.S.

    2000-01-01

    Egypt's current wheat production would be impossible without N fertilizers, the consumption of which has increased more than 75% in the last 20 years. The efficiency of uptake of applied N is low, and better management of both fertilizer and irrigation is needed to improve N recovery by crops and reduce losses from the plant/soil system. Field trials were conducted over a 3-year period, on Egypt's three main soil types: old irrigated land of the Nile valley, newly reclaimed sandy and calcareous soils, and salt-affected soil of the north delta. The responses of wheat cultivars to N, and patterns of N uptake and N loss, as affected by irrigation regime, were examined using 15 N. Cultivar Sakha 69 was more responsive to applied N and assimilated N more efficiently than other varieties under different soil types. Nitrogen loss from the sandy soil was as high as 57% whereas average loss in the clay soil was 17%. A higher water table in the salt-affected soil negatively affected N uptake. Irrigation with 75% of the required water for wheat had no effect on yield or N-uptake. (author)

  10. Relationship between nitrate reductase and nitrate uptake in phytoplankton in the Peru upwelling region

    International Nuclear Information System (INIS)

    Blasco, D.; MacIsaac, J.J.; Packard, T.T.; Dugdale, R.C.

    1984-01-01

    Nitrate reductase (NR) activity and 15 NO 3 - uptake in phytoplankton were compared under different environmental conditions on two cruises in the upwelling region off Peru. The NR activity and NO 3 - uptake rates responded differently to light and nutrients and the differences led to variations in the uptake:reductase ratio. Analysis of these variations suggests that the re-equilibration time of the two processes in response to environmental perturbation is an important source of variability. The nitrate uptake system responds faster than the nitrate reductase system. Considering these differences in response time, the basic differences in the two processes, and the differences in their measurement, the authors conclude that the NR activity measures the current nitrate-reducing potential, which relfects NO 3 - assimilation before the sampling time, while 15 NO 3 - uptake measures NO 3 - assimilation in the 6-h period following sampling. Thus, considering the sampling time as a point of reference, the former is a measure of the past and the latter is a measure of the future

  11. Acetate and bicarbonate assimilation and metabolite formation in Chlamydomonas reinhardtii: a 13C-NMR study.

    Directory of Open Access Journals (Sweden)

    Himanshu Singh

    Full Text Available Cellular metabolite analyses by (13C-NMR showed that C. reinhardtii cells assimilate acetate at a faster rate in heterotrophy than in mixotrophy. While heterotrophic cells produced bicarbonate and CO2aq, mixotrophy cells produced bicarbonate alone as predominant metabolite. Experiments with singly (13C-labelled acetate ((13CH(3-COOH or CH(3-(13COOH supported that both the (13C nuclei give rise to bicarbonate and CO2(aq. The observed metabolite(s upon further incubation led to the production of starch and triacylglycerol (TAG in mixotrophy, whereas in heterotrophy the TAG production was minimal with substantial accumulation of glycerol and starch. Prolonged incubation up to eight days, without the addition of fresh acetate, led to an increased TAG production at the expense of bicarbonate, akin to that of nitrogen-starvation. However, such TAG production was substantially high in mixotrophy as compared to that in heterotrophy. Addition of mitochondrial un-coupler blocked the formation of bicarbonate and CO2(aq in heterotrophic cells, even though acetate uptake ensued. Addition of PSII-inhibitor to mixotrophic cells resulted in partial conversion of bicarbonate into CO2(aq, which were found to be in equilibrium. In an independent experiment, we have monitored assimilation of bicarbonate via photoautotrophy and found that the cells indeed produce starch and TAG at a much faster rate as compared to that in mixotrophy and heterotrophy. Further, we noticed that the accumulation of starch is relatively more as compared to TAG. Based on these observations, we suggest that acetate assimilation in C. reinhardtii does not directly lead to TAG formation but via bicarbonate/CO2(aq pathways. Photoautotrophic mode is found to be the best growth condition for the production of starch and TAG and starch in C. reinhardtii.

  12. Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms

    KAUST Repository

    Plett, Darren

    2016-08-10

    Key message: We found metabolites, enzyme activities and enzyme transcript abundances vary significantly across the maize lifecycle, but weak correlation exists between the three groups. We identified putative genes regulating nitrate assimilation. Abstract: Progress in improving nitrogen (N) use efficiency (NUE) of crop plants has been hampered by the complexity of the N uptake and utilisation systems. To understand this complexity we measured the activities of seven enzymes and ten metabolites related to N metabolism in the leaf and root tissues of Gaspe Flint maize plants grown in 0.5 or 2.5 mM NO3 − throughout the lifecycle. The amino acids had remarkably similar profiles across the lifecycle except for transient responses, which only appeared in the leaves for aspartate or in the roots for asparagine, serine and glycine. The activities of the enzymes for N assimilation were also coordinated to a certain degree, most noticeably with a peak in root activity late in the lifecycle, but with wide variation in the activity levels over the course of development. We analysed the transcriptional data for gene sets encoding the measured enzymes and found that, unlike the enzyme activities, transcript levels of the corresponding genes did not exhibit the same coordination across the lifecycle and were only weakly correlated with the levels of various amino acids or individual enzyme activities. We identified gene sets which were correlated with the enzyme activity profiles, including seven genes located within previously known quantitative trait loci for enzyme activities and hypothesise that these genes are important for the regulation of enzyme activities. This work provides insights into the complexity of the N assimilation system throughout development and identifies candidate regulatory genes, which warrant further investigation in efforts to improve NUE in crop plants. © 2016, Springer Science+Business Media Dordrecht.

  13. Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms

    KAUST Repository

    Plett, Darren; Holtham, Luke; Baumann, Ute; Kalashyan, Elena; Francis, Karen; Enju, Akiko; Toubia, John; Roessner, Ute; Bacic, Antony; Rafalski, Antoni; Dhugga, Kanwarpal S.; Tester, Mark A.; Garnett, Trevor; Kaiser, Brent N.

    2016-01-01

    Key message: We found metabolites, enzyme activities and enzyme transcript abundances vary significantly across the maize lifecycle, but weak correlation exists between the three groups. We identified putative genes regulating nitrate assimilation. Abstract: Progress in improving nitrogen (N) use efficiency (NUE) of crop plants has been hampered by the complexity of the N uptake and utilisation systems. To understand this complexity we measured the activities of seven enzymes and ten metabolites related to N metabolism in the leaf and root tissues of Gaspe Flint maize plants grown in 0.5 or 2.5 mM NO3 − throughout the lifecycle. The amino acids had remarkably similar profiles across the lifecycle except for transient responses, which only appeared in the leaves for aspartate or in the roots for asparagine, serine and glycine. The activities of the enzymes for N assimilation were also coordinated to a certain degree, most noticeably with a peak in root activity late in the lifecycle, but with wide variation in the activity levels over the course of development. We analysed the transcriptional data for gene sets encoding the measured enzymes and found that, unlike the enzyme activities, transcript levels of the corresponding genes did not exhibit the same coordination across the lifecycle and were only weakly correlated with the levels of various amino acids or individual enzyme activities. We identified gene sets which were correlated with the enzyme activity profiles, including seven genes located within previously known quantitative trait loci for enzyme activities and hypothesise that these genes are important for the regulation of enzyme activities. This work provides insights into the complexity of the N assimilation system throughout development and identifies candidate regulatory genes, which warrant further investigation in efforts to improve NUE in crop plants. © 2016, Springer Science+Business Media Dordrecht.

  14. Assimilation of stratospheric ozone in the chemical transport model STRATAQ

    Directory of Open Access Journals (Sweden)

    B. Grassi

    2004-09-01

    Full Text Available We describe a sequential assimilation approach useful for assimilating tracer measurements into a three-dimensional chemical transport model (CTM of the stratosphere. The numerical code, developed largely according to Kha00, uses parameterizations and simplifications allowing assimilation of sparse observations and the simultaneous evaluation of analysis errors, with reasonable computational requirements. Assimilation parameters are set by using χ2 and OmF (Observation minus Forecast statistics. The CTM used here is a high resolution three-dimensional model. It includes a detailed chemical package and is driven by UKMO (United Kingdom Meteorological Office analyses. We illustrate the method using assimilation of Upper Atmosphere Research Satellite/Microwave Limb Sounder (UARS/MLS ozone observations for three weeks during the 1996 antarctic spring. The comparison of results from the simulations with TOMS (Total Ozone Mapping Spectrometer measurements shows improved total ozone fields due to assimilation of MLS observations. Moreover, the assimilation gives indications on a possible model weakness in reproducing polar ozone values during springtime.

  15. Statistical techniques to extract information during SMAP soil moisture assimilation

    Science.gov (United States)

    Kolassa, J.; Reichle, R. H.; Liu, Q.; Alemohammad, S. H.; Gentine, P.

    2017-12-01

    Statistical techniques permit the retrieval of soil moisture estimates in a model climatology while retaining the spatial and temporal signatures of the satellite observations. As a consequence, the need for bias correction prior to an assimilation of these estimates is reduced, which could result in a more effective use of the independent information provided by the satellite observations. In this study, a statistical neural network (NN) retrieval algorithm is calibrated using SMAP brightness temperature observations and modeled soil moisture estimates (similar to those used to calibrate the SMAP Level 4 DA system). Daily values of surface soil moisture are estimated using the NN and then assimilated into the NASA Catchment model. The skill of the assimilation estimates is assessed based on a comprehensive comparison to in situ measurements from the SMAP core and sparse network sites as well as the International Soil Moisture Network. The NN retrieval assimilation is found to significantly improve the model skill, particularly in areas where the model does not represent processes related to agricultural practices. Additionally, the NN method is compared to assimilation experiments using traditional bias correction techniques. The NN retrieval assimilation is found to more effectively use the independent information provided by SMAP resulting in larger model skill improvements than assimilation experiments using traditional bias correction techniques.

  16. On the role of perception in shaping phonological assimilation rules.

    Science.gov (United States)

    Hura, S L; Lindblom, B; Diehl, R L

    1992-01-01

    Assimilation of nasals to the place of articulation of following consonants is a common and natural process among the world's languages. Recent phonological theory attributes this naturalness to the postulated geometry of articulatory features and the notion of spreading (McCarthy, 1988). Others view assimilation as a result of perception (Ohala, 1990), or as perceptually tolerated articulatory simplification (Kohler, 1990). Kohler notes that certain consonant classes (such as nasals and stops) are more likely than other classes (such as fricatives) to undergo place assimilation to a following consonant. To explain this pattern, he proposes that assimilation tends not to occur when the members of a consonant class are relatively distinctive perceptually, such that their articulatory reduction would be particularly salient. This explanation, of course, presupposes that the stops and nasals which undergo place assimilation are less distinctive than fricatives, which tend not to assimilate. We report experimental results that confirm Kohler's perceptual assumption: In the context of a following word initial stop, fricatives were less confusable than nasals or unreleased stops. We conclude, in agreement with Ohala and Kohler, that perceptual factors are likely to shape phonological assimilation rules.

  17. Assimilation of stratospheric ozone in the chemical transport model STRATAQ

    Directory of Open Access Journals (Sweden)

    B. Grassi

    2004-09-01

    Full Text Available We describe a sequential assimilation approach useful for assimilating tracer measurements into a three-dimensional chemical transport model (CTM of the stratosphere. The numerical code, developed largely according to Kha00, uses parameterizations and simplifications allowing assimilation of sparse observations and the simultaneous evaluation of analysis errors, with reasonable computational requirements. Assimilation parameters are set by using χ2 and OmF (Observation minus Forecast statistics. The CTM used here is a high resolution three-dimensional model. It includes a detailed chemical package and is driven by UKMO (United Kingdom Meteorological Office analyses. We illustrate the method using assimilation of Upper Atmosphere Research Satellite/Microwave Limb Sounder (UARS/MLS ozone observations for three weeks during the 1996 antarctic spring. The comparison of results from the simulations with TOMS (Total Ozone Mapping Spectrometer measurements shows improved total ozone fields due to assimilation of MLS observations. Moreover, the assimilation gives indications on a possible model weakness in reproducing polar ozone values during springtime.

  18. SMOS brightness temperature assimilation into the Community Land Model

    Directory of Open Access Journals (Sweden)

    D. Rains

    2017-11-01

    Full Text Available SMOS (Soil Moisture and Ocean Salinity mission brightness temperatures at a single incident angle are assimilated into the Community Land Model (CLM across Australia to improve soil moisture simulations. Therefore, the data assimilation system DasPy is coupled to the local ensemble transform Kalman filter (LETKF as well as to the Community Microwave Emission Model (CMEM. Brightness temperature climatologies are precomputed to enable the assimilation of brightness temperature anomalies, making use of 6 years of SMOS data (2010–2015. Mean correlation R with in situ measurements increases moderately from 0.61 to 0.68 (11 % for upper soil layers if the root zone is included in the updates. A reduced improvement of 5 % is achieved if the assimilation is restricted to the upper soil layers. Root-zone simulations improve by 7 % when updating both the top layers and root zone, and by 4 % when only updating the top layers. Mean increments and increment standard deviations are compared for the experiments. The long-term assimilation impact is analysed by looking at a set of quantiles computed for soil moisture at each grid cell. Within hydrological monitoring systems, extreme dry or wet conditions are often defined via their relative occurrence, adding great importance to assimilation-induced quantile changes. Although still being limited now, longer L-band radiometer time series will become available and make model output improved by assimilating such data that are more usable for extreme event statistics.

  19. Chromatic assimilation unaffected by perceived depth of inducing light.

    Science.gov (United States)

    Shevell, Steven K; Cao, Dingcai

    2004-01-01

    Chromatic assimilation is a shift toward the color of nearby light. Several studies conclude that a neural process contributes to assimilation but the neural locus remains in question. Some studies posit a peripheral process, such as retinal receptive-field organization, while others claim the neural mechanism follows depth perception, figure/ground segregation, or perceptual grouping. The experiments here tested whether assimilation depends on a neural process that follows stereoscopic depth perception. By introducing binocular disparity, the test field judged in color was made to appear in a different depth plane than the light that induced assimilation. The chromaticity and spatial frequency of the inducing light, and the chromaticity of the test light, were varied. Chromatic assimilation was found with all inducing-light sizes and chromaticities, but the magnitude of assimilation did not depend on the perceived relative depth planes of the test and inducing fields. We found no evidence to support the view that chromatic assimilation depends on a neural process that follows binocular combination of the two eyes' signals.

  20. Uptake of chemicals from indoor air: Pathways and health effects

    DEFF Research Database (Denmark)

    Bekö, Gabriel

    2016-01-01

    Building occupants are exposed to manufactured chemicals. Exposure in the indoor environment can occur via non-dietary ingestion (e.g. indoor dust), inhalation and dermal absorption including dermal uptake directly from air. The extent of dermal uptake from air has been previously studied...... for volatile organic compounds (VOC). Not much is however known about its role for semivolatile organics (SVOC) and therefore this exposure pathway is often neglected in exposure assessments. Dermal uptake received attention with regards to contact transfer from contaminated surfaces. Recent modeling efforts...... intake from inhalation. Further experiments have been conducted with nicotine and the results are similar. Some of the SVOCs present indoors may have adverse health effects or are categorized as potential endocrine-disrupting compounds. It has been suggested that the health effects of a chemical may...

  1. Transcript profiling reveals rewiring of iron assimilation gene expression in Candida albicans and C. dubliniensis.

    LENUS (Irish Health Repository)

    Moran, Gary P

    2012-12-01

    Hyphal growth is repressed in Candida albicans and Candida dubliniensis by the transcription factor Nrg1. Transcript profiling of a C. dubliniensis NRG1 mutant identified a common group of 28 NRG1-repressed genes in both species, including the hypha-specific genes HWP1, ECE1 and the regulator of cell elongation UME6. Unexpectedly, C. dubliniensis NRG1 was required for wild-type levels of expression of 10 genes required for iron uptake including seven ferric reductases, SIT1, FTR1 and RBT5. However, at alkaline pH and during filamentous growth in 10% serum, most of these genes were highly induced in C. dubliniensis. Conversely, RBT5, PGA10, FRE10 and FRP1 did not exhibit induction during hyphal growth when NRG1 is downregulated, indicating that in C. dubliniensis NRG1 is also required for optimal expression of these genes in alkaline environments. In iron-depleted medium at pH 4.5, reduced growth of the NRG1 mutant relative to wild type was observed; however, growth was restored to wild-type levels or greater at pH 6.5, indicating that alkaline induction of iron assimilation gene expression could rescue this phenotype. These data indicate that transcriptional control of iron assimilation and pseudohypha formation has been separated in C. albicans, perhaps promoting growth in a wider range of niches.

  2. Application of Bred Vectors To Data Assimilation

    Science.gov (United States)

    Corazza, M.; Kalnay, E.; Patil, Dj

    We introduced a statistic, the BV-dimension, to measure the effective local finite-time dimensionality of the atmosphere. We show that this dimension is often quite low, and suggest that this finding has important implications for data assimilation and the accuracy of weather forecasting (Patil et al, 2001). The original database for this study was the forecasts of the NCEP global ensemble forecasting system. The initial differences between the control forecast and the per- turbed forecasts are called bred vectors. The control and perturbed initial conditions valid at time t=n(t are evolved using the forecast model until time t=(n+1) (t. The differences between the perturbed and the control forecasts are scaled down to their initial amplitude, and constitute the bred vectors valid at (n+1) (t. Their growth rate is typically about 1.5/day. The bred vectors are similar by construction to leading Lya- punov vectors except that they have small but finite amplitude, and they are valid at finite times. The original NCEP ensemble data set has 5 independent bred vectors. We define a local bred vector at each grid point by choosing the 5 by 5 grid points centered at the grid point (a region of about 1100km by 1100km), and using the north-south and east- west velocity components at 500mb pressure level to form a 50 dimensional column vector. Since we have k=5 global bred vectors, we also have k local bred vectors at each grid point. We estimate the effective dimensionality of the subspace spanned by the local bred vectors by performing a singular value decomposition (EOF analysis). The k local bred vector columns form a 50xk matrix M. The singular values s(i) of M measure the extent to which the k column unit vectors making up the matrix M point in the direction of v(i). We define the bred vector dimension as BVDIM={Sum[s(i)]}^2/{Sum[s(i)]^2} For example, if 4 out of the 5 vectors lie along v, and one lies along v, the BV- dimension would be BVDIM[sqrt(4), 1, 0

  3. Towards a Comprehensive Dynamic-chemistry Assimilation for Eos-Chem: Plans and Status in NASA's Data Assimilation Office

    Science.gov (United States)

    Pawson, Steven; Lin, Shian-Jiann; Rood, Richard B.; Stajner, Ivanka; Nebuda, Sharon; Nielsen, J. Eric; Douglass, Anne R.

    2000-01-01

    In order to support the EOS-Chem project, a comprehensive assimilation package for the coupled chemical-dynamical system is being developed by the Data Assimilation Office at NASA GSFC. This involves development of a coupled chemistry/meteorology model and of data assimilation techniques for trace species and meteorology. The model is being developed using the flux-form semi-Lagrangian dynamical core of Lin and Rood, the physical parameterizations from the NCAR Community Climate Model, and atmospheric chemistry modules from the Atmospheric Chemistry and Dynamics branch at NASA GSFC. To date the following results have been obtained: (i) multi-annual simulations with the dynamics-radiation model show the credibility of the package for atmospheric simulations; (ii) initial simulations including a limited number of middle atmospheric trace gases reveal the realistic nature of transport mechanisms, although there is still a need for some improvements. Samples of these results will be shown. A meteorological assimilation system is currently being constructed using the model; this will form the basis for the proposed meteorological/chemical assimilation package. The latter part of the presentation will focus on areas targeted for development in the near and far terms, with the objective of Providing a comprehensive assimilation package for the EOS-Chem science experiment. The first stage will target ozone assimilation. The plans also encompass a reanalysis (ReSTS) for the 1991-1995 period, which includes the Mt. Pinatubo eruption and the time when a large number of UARS observations were available. One of the most challenging aspects of future developments will be to couple theoretical advances in tracer assimilation with the practical considerations of a real environment and eventually a near-real-time assimilation system.

  4. Assimilate partitioning in avocado, Persea americana

    Energy Technology Data Exchange (ETDEWEB)

    Finazzo, S.; Davenport, T.L.

    1986-04-01

    Assimilate partitioning is being studied in avocado, Persea americana cv. Millborrow in relation to fruit set. Single leaves on girdled branches of 10 year old trees were radiolabeled for 1 hr with 13..mu..Ci of /sup 14/CO/sub 2/. The source leaves were sampled during the experiment to measure translocation rates. At harvest the sink tissues were dissected and the incorporated radioactivity was measured. The translocation of /sup 14/C-labelled compounds to other leaves was minimal. Incorporation of label into fruitlets varied with the tissue and the stage of development. Sink (fruitlets) nearest to the labelled leaf and sharing the same phyllotaxy incorporated the most /sup 14/C. Source leaves for single non-abscising fruitlets retained 3X more /sup 14/C-labelled compounds than did source leaves for 2 or more fruitlets at 31 hrs. post-labelling. Export of label decreased appreciably when fruitlets abscised. If fruitlets abscised within 4 days of labeling then the translocation pattern was similar to the pattern for single fruitlets. If the fruitlet abscised later, the translocation pattern was intermediate between the single and double fruitlet pattern.

  5. Efficient data assimilation algorithm for bathymetry application

    Science.gov (United States)

    Ghorbanidehno, H.; Lee, J. H.; Farthing, M.; Hesser, T.; Kitanidis, P. K.; Darve, E. F.

    2017-12-01

    Information on the evolving state of the nearshore zone bathymetry is crucial to shoreline management, recreational safety, and naval operations. The high cost and complex logistics of using ship-based surveys for bathymetry estimation have encouraged the use of remote sensing techniques. Data assimilation methods combine the remote sensing data and nearshore hydrodynamic models to estimate the unknown bathymetry and the corresponding uncertainties. In particular, several recent efforts have combined Kalman Filter-based techniques such as ensembled-based Kalman filters with indirect video-based observations to address the bathymetry inversion problem. However, these methods often suffer from ensemble collapse and uncertainty underestimation. Here, the Compressed State Kalman Filter (CSKF) method is used to estimate the bathymetry based on observed wave celerity. In order to demonstrate the accuracy and robustness of the CSKF method, we consider twin tests with synthetic observations of wave celerity, while the bathymetry profiles are chosen based on surveys taken by the U.S. Army Corps of Engineer Field Research Facility (FRF) in Duck, NC. The first test case is a bathymetry estimation problem for a spatially smooth and temporally constant bathymetry profile. The second test case is a bathymetry estimation problem for a temporally evolving bathymetry from a smooth to a non-smooth profile. For both problems, we compare the results of CSKF with those obtained by the local ensemble transform Kalman filter (LETKF), which is a popular ensemble-based Kalman filter method.

  6. Efficient Data Assimilation Algorithms for Bathymetry Applications

    Science.gov (United States)

    Ghorbanidehno, H.; Kokkinaki, A.; Lee, J. H.; Farthing, M.; Hesser, T.; Kitanidis, P. K.; Darve, E. F.

    2016-12-01

    Information on the evolving state of the nearshore zone bathymetry is crucial to shoreline management, recreational safety, and naval operations. The high cost and complex logistics of using ship-based surveys for bathymetry estimation have encouraged the use of remote sensing monitoring. Data assimilation methods combine monitoring data and models of nearshore dynamics to estimate the unknown bathymetry and the corresponding uncertainties. Existing applications have been limited to the basic Kalman Filter (KF) and the Ensemble Kalman Filter (EnKF). The former can only be applied to low-dimensional problems due to its computational cost; the latter often suffers from ensemble collapse and uncertainty underestimation. This work explores the use of different variants of the Kalman Filter for bathymetry applications. In particular, we compare the performance of the EnKF to the Unscented Kalman Filter and the Hierarchical Kalman Filter, both of which are KF variants for non-linear problems. The objective is to identify which method can better handle the nonlinearities of nearshore physics, while also having a reasonable computational cost. We present two applications; first, the bathymetry of a synthetic one-dimensional cross section normal to the shore is estimated from wave speed measurements. Second, real remote measurements with unknown error statistics are used and compared to in situ bathymetric survey data collected at the USACE Field Research Facility in Duck, NC. We evaluate the information content of different data sets and explore the impact of measurement error and nonlinearities.

  7. Assimilate partitioning in avocado, Persea americana

    International Nuclear Information System (INIS)

    Finazzo, S.; Davenport, T.L.

    1986-01-01

    Assimilate partitioning is being studied in avocado, Persea americana cv. Millborrow in relation to fruit set. Single leaves on girdled branches of 10 year old trees were radiolabeled for 1 hr with 13μCi of 14 CO 2 . The source leaves were sampled during the experiment to measure translocation rates. At harvest the sink tissues were dissected and the incorporated radioactivity was measured. The translocation of 14 C-labelled compounds to other leaves was minimal. Incorporation of label into fruitlets varied with the tissue and the stage of development. Sink (fruitlets) nearest to the labelled leaf and sharing the same phyllotaxy incorporated the most 14 C. Source leaves for single non-abscising fruitlets retained 3X more 14 C-labelled compounds than did source leaves for 2 or more fruitlets at 31 hrs. post-labelling. Export of label decreased appreciably when fruitlets abscised. If fruitlets abscised within 4 days of labeling then the translocation pattern was similar to the pattern for single fruitlets. If the fruitlet abscised later, the translocation pattern was intermediate between the single and double fruitlet pattern

  8. Tracing metabolic routes of dietary carbohydrate and protein in rainbow trout (Oncorhynchus mykiss) using stable isotopes ([¹³C]starch and [¹⁵N]protein): effects of gelatinisation of starches and sustained swimming.

    Science.gov (United States)

    Felip, Olga; Ibarz, Antoni; Fernández-Borràs, Jaume; Beltrán, Marta; Martín-Pérez, Miguel; Planas, Josep V; Blasco, Josefina

    2012-03-01

    Here we examined the use of stable isotopes, [¹³C]starch and [¹⁵N]protein, as dietary tracers to study carbohydrate assimilation and distribution and protein utilisation, respectively, by rainbow trout (Oncorhynchus mykiss). The capacity of glucose uptake and use by tissues was studied, first, by varying the digestibility of carbohydrate-rich diets (30 % carbohydrate), using raw starch and gelatinised starch (GS) and, second, by observing the effects of two regimens of activity (voluntary swimming, control; sustained swimming at 1·3 body lengths/s, exercise) on the GS diet. Isotopic ratio enrichment (¹³C and ¹⁵N) of the various tissue components (protein, lipid and glycogen) was measured in the liver, muscles, viscera and the rest of the fish at 11 and 24 h after a forced meal. A level of 30 % of digestible carbohydrates in the food exceeded the capacity of rainbow trout to use this nutrient, causing long-lasting hyperglycaemia that raises glucose uptake by tissues, and the synthesis of glycogen and lipid in liver. Total 13C recovered 24 h post-feeding in the GS group was lower than at 11 h, indicating a proportional increase in glucose oxidation, although the deposition of lipids in white muscle (WM) increased. Prolonged hyperglycaemia was prevented by exercise, since sustained swimming enhances the use of dietary carbohydrates, mainly through conversion to lipids in liver and oxidation in muscles, especially in red muscle (RM). Higher recoveries of total 15N for exercised fish at 24 h, mainly into the protein fraction of both RM and WM, provide evidence that sustained swimming improves protein deposition, resulting in an enhancement of the protein-sparing effect.

  9. Assimilate unloading from maize (Zea mays L.) pedicel tissues

    International Nuclear Information System (INIS)

    Porter, G.A.; Knievel, D.P.; Shannon, J.C.

    1987-01-01

    Sugar and 14 C-assimilate release from the pedicel tissue of attached maize (Zea mays L.) kernels was studied following treatment with solute concentrations of up to 800 millimolal. Exposure and collection times ranged from 3 to 6 hours. Sugar and 14 C-assimilate unloading and collection in agar traps was reduced by 25 and 43%, respectively, following exposure to 800 millimolal mannitol. Inhibition of unloading was not specific to mannitol, since similar concentrations of glucose, fructose, or equimolar glucose plus fructose resulted in comparable inhibition. Ethylene glycol, a rapidly permeating solute which should not greatly influence cell turgor, did not inhibit 14 C-assimilate unloading. Based on these results, they suggest that inhibition of unloading by high concentrations of sugar or mannitol was due to reduced pedicel cell turgor. Changes in pedicel cell turgor may play a role in the regulation of assimilate transfer within the maize kernel

  10. Develop a Hybrid Coordinate Ocean Model with Data Assimilation Capabilities

    National Research Council Canada - National Science Library

    Thacker, W. C

    2003-01-01

    .... The objectives of the research are as follows: (1) to develop a methodology for assimilating temperature and salinity profiles from XBT, CTD, and ARGO float data that accommodates the peculiarities of HYCOM's hybrid vertical coordinates, allowing...

  11. Regional Ocean Modeling System (ROMS): CNMI: Data Assimilating

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Regional Ocean Modeling System (ROMS) 3-day, 3-hourly data assimilating hindcast for the region surrounding the Commonwealth of the Northern Mariana Islands (CNMI)...

  12. A simple lightning assimilation technique for improving retrospective WRF simulations.

    Science.gov (United States)

    Convective rainfall is often a large source of error in retrospective modeling applications. In particular, positive rainfall biases commonly exist during summer months due to overactive convective parameterizations. In this study, lightning assimilation was applied in the Kain-F...

  13. Data assimilation in modeling ocean processes: A bibliographic study

    Digital Repository Service at National Institute of Oceanography (India)

    Mahadevan, R.; Fernandes, A.A.; Saran, A.K.

    An annotated bibliography on studies related to data assimilation in modeling ocean processes has been prepared. The bibliography listed here is not comprehensive and is not prepared from the original references. Information obtainable from...

  14. Air Quality Activities in the Global Modeling and Assimilation Office

    Science.gov (United States)

    Pawson, Steven

    2016-01-01

    GMAO's mission is to enhance the use of NASA's satellite observations in weather and climate modeling. This presentation will be discussing GMAO's mission, value of data assimilation, and some relevant (available) GMAO data products.

  15. UARS Correlative UKMO Daily Gridded Stratospheric Assimilated Data V001

    Data.gov (United States)

    National Aeronautics and Space Administration — The UARS Correlative assimilation data from the U.K. Meteorological Office (UKMO) consists of daily model runs at 12:00 GMT as a means of providing an independent...

  16. Regional Ocean Modeling System (ROMS): Samoa: Data Assimilating

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Regional Ocean Modeling System (ROMS) 3-day, 3-hourly data assimilating hindcast for the region surrounding the islands of Samoa at approximately 3-km resolution....

  17. Regional Ocean Modeling System (ROMS): Main Hawaiian Islands: Data Assimilating

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Regional Ocean Modeling System (ROMS) 3-day, 3-hourly data assimilating hindcast for the region surrounding the main Hawaiian islands at approximately 4-km...

  18. The Culure Assimilator: An Approach to Cross-Cultural Training

    Science.gov (United States)

    Fiedler, Fred E.; And Others

    1971-01-01

    Evaluates the cultural assimilator, a kind of training manual to help members of one culture understand and adjust to another culture. Describes those constructed for the Arab countries, Iran, Thailand, Central America, and Greece. (MB)

  19. Regional Ocean Modeling System (ROMS): Oahu: Data Assimilating

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Regional Ocean Modeling System (ROMS) 2-day, 3-hourly data assimilating hindcast for the region surrounding the island of Oahu at approximately 1-km resolution....

  20. Assimilation of Aircraft Observations in High-Resolution Mesoscale Modeling

    Directory of Open Access Journals (Sweden)

    Brian P. Reen

    2018-01-01

    Full Text Available Aircraft-based observations are a promising source of above-surface observations for assimilation into mesoscale model simulations. The Tropospheric Airborne Meteorological Data Reporting (TAMDAR observations have potential advantages over some other aircraft observations including the presence of water vapor observations. The impact of assimilating TAMDAR observations via observation nudging in 1 km horizontal grid spacing Weather Research and Forecasting model simulations is evaluated using five cases centered over California. Overall, the impact of assimilating the observations is mixed, with the layer with the greatest benefit being above the surface in the lowest 1000 m above ground level and the variable showing the most consistent benefit being temperature. Varying the nudging configuration demonstrates the sensitivity of the results to details of the assimilation, but does not clearly demonstrate the superiority of a specific configuration.

  1. Disconfirmed hedonic expectations produce perceptual contrast, not assimilation.

    Science.gov (United States)

    Zellner, Debra A; Strickhouser, Dinah; Tornow, Carina E

    2004-01-01

    In studies of hedonic ratings, contrast is the usual result when expectations about test stimuli are produced through the presentation of context stimuli, whereas assimilation is the usual result when expectations about test stimuli are produced through labeling, advertising, or the relaying of information to the subject about the test stimuli. Both procedures produce expectations that are subsequently violated, but the outcomes are different. The present studies demonstrate that both assimilation and contrast can occur even when expectations are produced by verbal labels and the degree of violation of the expectation is held constant. One factor determining whether assimilation or contrast occurs appears to be the certainty of the expectation. Expectations that convey certainty are produced by methods that lead to social influence on subjects' ratings, producing assimilation. When social influence is not a factor and subjects give judgments influenced only by the perceived hedonic value of the stimulus, contrast is the result.

  2. Satellite Sounder Data Assimilation for Improving Alaska Region Weather Forecast

    Science.gov (United States)

    Zhu, Jiang; Stevens, E.; Zavodsky, B. T.; Zhang, X.; Heinrichs, T.; Broderson, D.

    2014-01-01

    Data assimilation has been demonstrated very useful in improving both global and regional numerical weather prediction. Alaska has very coarser surface observation sites. On the other hand, it gets much more satellite overpass than lower 48 states. How to utilize satellite data to improve numerical prediction is one of hot topics among weather forecast community in Alaska. The Geographic Information Network of Alaska (GINA) at University of Alaska is conducting study on satellite data assimilation for WRF model. AIRS/CRIS sounder profile data are used to assimilate the initial condition for the customized regional WRF model (GINA-WRF model). Normalized standard deviation, RMSE, and correlation statistic analysis methods are applied to analyze one case of 48 hours forecasts and one month of 24-hour forecasts in order to evaluate the improvement of regional numerical model from Data assimilation. The final goal of the research is to provide improved real-time short-time forecast for Alaska regions.

  3. Multi-parametric variational data assimilation for hydrological forecasting

    Science.gov (United States)

    Alvarado-Montero, R.; Schwanenberg, D.; Krahe, P.; Helmke, P.; Klein, B.

    2017-12-01

    Ensemble forecasting is increasingly applied in flow forecasting systems to provide users with a better understanding of forecast uncertainty and consequently to take better-informed decisions. A common practice in probabilistic streamflow forecasting is to force deterministic hydrological model with an ensemble of numerical weather predictions. This approach aims at the representation of meteorological uncertainty but neglects uncertainty of the hydrological model as well as its initial conditions. Complementary approaches use probabilistic data assimilation techniques to receive a variety of initial states or represent model uncertainty by model pools instead of single deterministic models. This paper introduces a novel approach that extends a variational data assimilation based on Moving Horizon Estimation to enable the assimilation of observations into multi-parametric model pools. It results in a probabilistic estimate of initial model states that takes into account the parametric model uncertainty in the data assimilation. The assimilation technique is applied to the uppermost area of River Main in Germany. We use different parametric pools, each of them with five parameter sets, to assimilate streamflow data, as well as remotely sensed data from the H-SAF project. We assess the impact of the assimilation in the lead time performance of perfect forecasts (i.e. observed data as forcing variables) as well as deterministic and probabilistic forecasts from ECMWF. The multi-parametric assimilation shows an improvement of up to 23% for CRPS performance and approximately 20% in Brier Skill Scores with respect to the deterministic approach. It also improves the skill of the forecast in terms of rank histogram and produces a narrower ensemble spread.

  4. Ethnicity, assimilation and harassment in the labor market

    OpenAIRE

    Epstein, Gil S.; Gang, Ira N.

    2008-01-01

    We often observe minority ethnic groups at a disadvantage relative to the majority. Why is this and what can be done about it? Efforts made to assimilate, and time, are two elements working to bring the minority into line with the majority. A third element, the degree to which the majority welcomes the minority, also plays a role. We develop a simple theoretical model useful for examining the consequences for assimilation and harassment of growth in the minority population, time, and the role...

  5. Joint Center for Satellite Data Assimilation Overview and Research Activities

    Science.gov (United States)

    Auligne, T.

    2017-12-01

    In 2001 NOAA/NESDIS, NOAA/NWS, NOAA/OAR, and NASA, subsequently joined by the US Navy and Air Force, came together to form the Joint Center for Satellite Data Assimilation (JCSDA) for the common purpose of accelerating the use of satellite data in environmental numerical prediction modeling by developing, using, and anticipating advances in numerical modeling, satellite-based remote sensing, and data assimilation methods. The primary focus was to bring these advances together to improve operational numerical model-based forecasting, under the premise that these partners have common technical and logistical challenges assimilating satellite observations into their modeling enterprises that could be better addressed through cooperative action and/or common solutions. Over the last 15 years, the JCSDA has made and continues to make major contributions to operational assimilation of satellite data. The JCSDA is a multi-agency U.S. government-owned-and-operated organization that was conceived as a venue for the several agencies NOAA, NASA, USAF and USN to collaborate on advancing the development and operational use of satellite observations into numerical model-based environmental analysis and forecasting. The primary mission of the JCSDA is to "accelerate and improve the quantitative use of research and operational satellite data in weather, ocean, climate and environmental analysis and prediction systems." This mission is fulfilled through directed research targeting the following key science objectives: Improved radiative transfer modeling; new instrument assimilation; assimilation of humidity, clouds, and precipitation observations; assimilation of land surface observations; assimilation of ocean surface observations; atmospheric composition; and chemistry and aerosols. The goal of this presentation is to briefly introduce the JCSDA's mission and vision, and to describe recent research activities across various JCSDA partners.

  6. Exosomes: Mechanisms of Uptake

    Directory of Open Access Journals (Sweden)

    Kelly J. McKelvey

    2015-07-01

    Full Text Available Exosomes are 30–100 nm microvesicles which contain complex cellular signals of RNA, protein and lipids. Because of this, exosomes are implicated as having limitless therapeutic potential for the treatment of cancer, pregnancy complications, infections, and autoimmune diseases. To date we know a considerable amount about exosome biogenesis and secretion, but there is a paucity of data regarding the uptake of exosomes by immune and non-immune cell types (e.g., cancer cells and the internal signalling pathways by which these exosomes elicit a cellular response. Answering these questions is of paramount importance.

  7. Exosomes: Mechanisms of Uptake

    Directory of Open Access Journals (Sweden)

    Kelly J. McKelvey

    2015-07-01

    Full Text Available Exosomes are 30–100 nm microvesicles which contain complex cellular signals of RNA, protein and lipids. Because of this, exosomes are implicated as having limitless therapeutic potential for the treatment of cancer, pregnancy complications, infections, and autoimmune diseases. To date we know a considerable amount about exosome biogenesis and secretion, but there is a paucity of data regarding the uptake of exosomes by immune and non- immune cell types (e.g., cancer cells and the internal signalling pathways by which these exosomes elicit a cellular response. Answering these questions is of para‐ mount importance.

  8. Yeast identification: reassessment of assimilation tests as sole universal identifiers.

    Science.gov (United States)

    Spencer, J; Rawling, S; Stratford, M; Steels, H; Novodvorska, M; Archer, D B; Chandra, S

    2011-11-01

    To assess whether assimilation tests in isolation remain a valid method of identification of yeasts, when applied to a wide range of environmental and spoilage isolates. Seventy-one yeast strains were isolated from a soft drinks factory. These were identified using assimilation tests and by D1/D2 rDNA sequencing. When compared to sequencing, assimilation test identifications (MicroLog™) were 18·3% correct, a further 14·1% correct within the genus and 67·6% were incorrectly identified. The majority of the latter could be attributed to the rise in newly reported yeast species. Assimilation tests alone are unreliable as a universal means of yeast identification, because of numerous new species, variability of strains and increasing coincidence of assimilation profiles. Assimilation tests still have a useful role in the identification of common species, such as the majority of clinical isolates. It is probable, based on these results, that many yeast identifications reported in older literature are incorrect. This emphasizes the crucial need for accurate identification in present and future publications. © 2011 The Authors. Letters in Applied Microbiology © 2011 The Society for Applied Microbiology.

  9. IASI Radiance Data Assimilation in Local Ensemble Transform Kalman Filter

    Science.gov (United States)

    Cho, K.; Hyoung-Wook, C.; Jo, Y.

    2016-12-01

    Korea institute of Atmospheric Prediction Systems (KIAPS) is developing NWP model with data assimilation systems. Local Ensemble Transform Kalman Filter (LETKF) system, one of the data assimilation systems, has been developed for KIAPS Integrated Model (KIM) based on cubed-sphere grid and has successfully assimilated real data. LETKF data assimilation system has been extended to 4D- LETKF which considers time-evolving error covariance within assimilation window and IASI radiance data assimilation using KPOP (KIAPS package for observation processing) with RTTOV (Radiative Transfer for TOVS). The LETKF system is implementing semi operational prediction including conventional (sonde, aircraft) observation and AMSU-A (Advanced Microwave Sounding Unit-A) radiance data from April. Recently, the semi operational prediction system updated radiance observations including GPS-RO, AMV, IASI (Infrared Atmospheric Sounding Interferometer) data at July. A set of simulation of KIM with ne30np4 and 50 vertical levels (of top 0.3hPa) were carried out for short range forecast (10days) within semi operation prediction LETKF system with ensemble forecast 50 members. In order to only IASI impact, our experiments used only conventional and IAIS radiance data to same semi operational prediction set. We carried out sensitivity test for IAIS thinning method (3D and 4D). IASI observation number was increased by temporal (4D) thinning and the improvement of IASI radiance data impact on the forecast skill of model will expect.

  10. Exploring synchronisation in nonlinear data assimilation

    Science.gov (United States)

    Rodrigues-Pinheiro, Flavia; van Leeuwen, Peter Jan

    2016-04-01

    Present-day data assimilation methods are based on linearizations and face serious problems in strongly nonlinear cases such as convection. A promising solution to this problem is a particle filter, which provides a representation of the model probability density function (pdf) by a discrete set of model states, or particles. The basic particle filter uses Bayes's theorem directly, but does not work in high-dimensional cases. The performance can be improved by considering the proposal density freedom. This allows one to change the model equations to bring the particles closer to the observations, resulting in very efficient update schemes at observation times, but extending these schemes between observation times is computationally expensive. Simple solutions like nudging have been shown to be not powerful enough. A potential solution might be synchronization, in which one tries to synchronise the model of a system with the true evolution of the system via the observations. In practice this means that an extra term is added to the model equations that hampers growth of instabilities on the synchronization manifold. Especially the delayed versions, where observations are allowed to influence the state in the past have shown some remarkable successes. Unfortunately, all efforts ignore errors in the observations, and as soon as these are introduced the performance degrades considerably. There is a close connection between time-delayed synchronization and a Kalman Smoother, which does allow for observational (and other) errors. In this presentation we will explore this connection to the full, with a view to extend synchronization to more realistic settings. Specifically performance of the spread of information from observed to unobserved variables is studied in detail. The results indicate that this extended synchronisation is a promising tool to steer the model states towards the observations efficiently. If time permits, we will show initial results of embedding the

  11. Thyroid Uptake Measurement System

    International Nuclear Information System (INIS)

    Nguyen Duc Tuan; Nguyen Thi Bao My; Nguyen Van Sy

    2007-01-01

    The NED-UP.M7 is a complete thyroid uptake and analysis system specifically designed for nuclear medicine. Capable of performing a full range of studies this system provides fast, accurate results for Uptake Studies. The heart of the NED-UP.M7 is a microprocessor-controlled 2048 channel Compact Multi-Channel Analyzer, coupled to a 2 inch x 2 inch NaI(Tl) detector with a USB personal computer interface. The system offers simple, straight-forward operation using pre-programmed isotopes, and menudriven prompts to guide the user step by step through each procedure. The pre-programmed radionuclides include I-123, I-125, I-131, Tc-99m and Cs-137. The user-defined radionuclides also allow for isotope identification while the printer provides hard copy printouts for patient and department record keeping. The included software program running on PC (Windows XP-based) is a user friendly program with menudriven and graphic interface for easy controlling the system and managing measurement results of patient on Excel standard form. (author)

  12. Narrative Dietary Counseling

    DEFF Research Database (Denmark)

    Søndergaard Jakobsen, Nina; Kaufmann, Lisbeth; Hennesser, Yvonne

    2017-01-01

    Using cases and empirical data from a research and development project at a Danish prevention center, this study explores whether and how the use of narrative dietary counseling can strengthen dietitians' relationships and collaboration with clients who are chronically ill. The results of the study...... dietary counseling empowered clients and improved relationship building and collaboration between client and dietitian....

  13. Dietary determinants of obesity

    NARCIS (Netherlands)

    Huaidong, D.U.; Feskens, E.J.M.

    2010-01-01

    Obesity has become a serious public health problem worldwide, and dietary composition can play a role in its prevention and treatment. However, available literature on the impacts of different dietary factors on weight change is inconsistent, or even conflicting. In this review, we briefly

  14. Dietary intake of phytoestrogens

    NARCIS (Netherlands)

    Bakker MI; SIR

    2004-01-01

    The dietary intake of phytoestrogens supposedly influences a variety of diseases, both in terms of beneficial and adverse effects. This report describes current knowledge on dietary intakes of phytoestrogens in Western countries, and briefly summarizes the evidence for health effects. The

  15. Effect of Body Size and Food Quality on the Assimilation of "6"5Zn and "1"1"0"mAg in Bloody Cockles (Anadara Senilis) from Ghana

    International Nuclear Information System (INIS)

    Kuranchie-Mensah, H.; Teyssie, J.-L.; Oberhaensli, F.; Metian, M.; Warnau, M.

    2015-01-01

    In coastal ecosystems where bivalves are often exposed to metal contamination, dietary exposure has been recognised as a dominant uptake pathway of trace metals in bivalves. The present study employed radiotracers ("6"5Zn and "1"1"0"mAg) to assess the assimilation efficiency (AE) of the two elements in Bloody cockles (Anadara senilis) from Narkwa Lagoon, Ghana. AE is an important parameter in determining bioavailability of trace elements from food. Zn and Ag bioavailabilty was assessed using single-feeding approach, followed by a 28–day depuration period, with two species of phytoplankton (Isochrysis galbana and Skelotonema costatum) used as food, and two different size groups of Bloody Cockles. Results indicate that AE of "6"5Zn and "1"1"0"mAg were influenced by the phytoplankton species used as food whereas, for both algal species, AE increased slightly with increasing cockle body size. Once taken up, "6"5Zn was relatively strongly retained in cockle’s flesh (biological half-live: ≈40 days) whereas "1"1"0"mAg was rapidly released (biological halflive: ≈5 days). A complementary experiment -using subcellular partitioning and in vitro digestion method- was performed to provide additional information on the proportion of "6"5Zn and "1"1"0mAg in the bloody cockle that is available for transfer to next trophic levels. Overall, this work highlighted that trace metal accumulation in marine filter feeders does depend on the metal bioavailability in food as well as on other biological factors, such as body size. (author)

  16. Field determination of 137Cs assimilation efficiencies in wild cotton rats (Sigmodon hispidus)

    International Nuclear Information System (INIS)

    Garten, C.T. Jr.

    1980-01-01

    Unexplained anomalies have been found between predicted and observed values when a model is used to predict radiocesium uptake by wild cotton rats. An experiment is described in which laboratory-born cotton rats from wild parents were released into rat-proof enclosures on a site contaminated with 137 Cs. The rats fed on fescue growing in the enclosures. Samples of soil, fescue, rat carcasses and GI tracts from these plots were analyzed for 137 Cs. When assimilation efficiencies for radiocesium were calculated from the results of these measurements values lower than those previously assumed to apply to the uptake 134 137 Cs across the mammalian GI tract were obtained. It is suggested that these lower values may be due to the contribution of soil-bound 137 Cs to 137 Cs levels in plants and rat GI tracts since examination of GI tracts indicates that wild cotton rats ingest some soil, and soil-bound Cs cannot be readily extracted by gastric juice. (author)

  17. Data Assimilation in Forest Inventory: First Empirical Results

    Directory of Open Access Journals (Sweden)

    Mattias Nyström

    2015-12-01

    Full Text Available Data assimilation techniques were used to estimate forest stand data in 2011 by sequentially combining remote sensing based estimates of forest variables with predictions from growth models. Estimates of stand data, based on canopy height models obtained from image matching of digital aerial images at six different time-points between 2003 and 2011, served as input to the data assimilation. The assimilation routines were built on the extended Kalman filter. The study was conducted in hemi-boreal forest at the Remningstorp test site in southern Sweden (lat. 13°37′ N; long. 58°28′ E. The assimilation results were compared with two other methods used in practice for estimation of forest variables: the first was to use only the most recent estimate obtained from remotely sensed data (2011 and the second was to forecast the first estimate (2003 to the endpoint (2011. All three approaches were validated using nine 40 m radius validation plots, which were carefully measured in the field. The results showed that the data assimilation approach provided better results than the two alternative methods. Data assimilation of remote sensing time series has been used previously for calibrating forest ecosystem models, but, to our knowledge, this is the first study with real data where data assimilation has been used for estimating forest inventory data. The study constitutes a starting point for the development of a framework useful for sequentially utilizing all types of remote sensing data in order to provide precise and up-to-date estimates of forest stand parameters.

  18. Dietary macronutrient recommendations for optimal Dietary ...

    African Journals Online (AJOL)

    Both resistance and endurance-trained athletes have a higher dietary protein requirement of between 1.2 and 1.8 g protein/kg body weight (BW)/day, with an upper limit of 2 g protein/kg BW/day. To increase the rate of protein synthesis during the recovery period, immediate ingestion of protein postexercise is recommended ...

  19. Interactions between shoots and roots of two soy bean varieties at different phosphate nutritional level: Distribution of 14C-assimilates and carbohydrate status

    International Nuclear Information System (INIS)

    Burauel, P.

    1987-11-01

    The influence of the phosphate nutritional status on assimilate distribution between shoot and root was studied for two soya bean varieties (Century and Woodworth). Plants at a full nutritional level (+P variants) and those in a condition of moderate P stress (-P variants) were considered. Particular attention was paid to the following aspect: Is a modification of the assimilate distribution, conditioned by phosphate withdrawal, only associated with the reduction in the shoot/root ratio or do changes in distribution already occur before morphological parameters are influenced? Further it is known from literature that after a contemporary interruption of the phoshate supply plants display an increased phosphate uptake rate when the supply is restored in comparison to plants nourished normally. In this respect the following aspects were of interest: Does an increased uptake rate, for which sufficient energy must be made available, have a direct effect on the transport of assimilates to the root? Is the carbohydrate content of the roots possibly a parameter with which the difference in efficiency of the two varieties may be described? (orig./MG) [de

  20. Nitrogen assimilation and short term retention in a nutrient-rich tidal freshwater marsh – a whole ecosystem 15N enrichment study

    Directory of Open Access Journals (Sweden)

    B. Gribsholt

    2007-01-01

    Full Text Available An intact tidal freshwater marsh system (3477 m2 was labelled by adding 15N-ammonium as a tracer to the flood water inundating the ecosystem. The appearance and retention of 15N-label in different marsh components (leaves, roots, sediment, leaf litter and invertebrate fauna was followed over 15 days. This allowed us to elucidate the direct assimilation and dependence on creek-water nitrogen on a relatively short term and provided an unbiased assessment of the relative importance of the various compartments within the ecosystem. Two separate experiments were conducted, one in spring/early summer (May 2002 when plants were young and building up biomass; the other in late summer (September 2003 when macrophytes were in a flowering or early senescent state. Nitrogen assimilation rate (per hour inundated was >3 times faster in May compared to September. On both occasions, however, the results clearly revealed that the less conspicuous compartments such as leaf litter and ruderal vegetations are more important in nitrogen uptake and retention than the prominent reed (Phragmites australis meadows. Moreover, short-term nitrogen retention in these nutrient rich marshes occurs mainly via microbial pathways associated with the litter and sediment. Rather than direct uptake by macrophytes, it is the large reactive surface area provided by the tidal freshwater marsh vegetation that is most crucial for nitrogen transformation, assimilation and short term retention in nutrient rich tidal freshwater marshes. Our results clearly revealed the dominant role of microbes in initial nitrogen retention in marsh ecosystems.

  1. DART: New Research Using Ensemble Data Assimilation in Geophysical Models

    Science.gov (United States)

    Hoar, T. J.; Raeder, K.

    2015-12-01

    The Data Assimilation Research Testbed (DART) is a community facilityfor ensemble data assimilation developed and supported by the NationalCenter for Atmospheric Research. DART provides a comprehensive suite of software, documentation, and tutorials that can be used for ensemble data assimilation research, operations, and education. Scientists and software engineers at NCAR are available to support DART users who want to use existing DART products or develop their own applications. Current DART users range from university professors teaching data assimilation, to individual graduate students working with simple models, through national laboratories doing operational prediction with large state-of-the-art models. DART runs efficiently on many computational platforms ranging from laptops through thousands of cores on the newest supercomputers.This poster focuses on several recent research activities using DART with geophysical models.Using CAM/DART to understand whether OCO-2 Total Precipitable Water observations can be useful in numerical weather prediction.Impacts of the synergistic use of Infra-red CO retrievals (MOPITT, IASI) in CAM-CHEM/DART assimilations.Assimilation and Analysis of Observations of Amazonian Biomass Burning Emissions by MOPITT (aerosol optical depth), MODIS (carbon monoxide) and MISR (plume height).Long term evaluation of the chemical response of MOPITT-CO assimilation in CAM-CHEM/DART OSSEs for satellite planning and emission inversion capabilities.Improved forward observation operators for land models that have multiple land use/land cover segments in a single grid cell,Simulating mesoscale convective systems (MCSs) using a variable resolution, unstructured grid in the Model for Prediction Across Scales (MPAS) and DART.The mesoscale WRF+DART system generated an ensemble of year-long, real-time initializations of a convection allowing model over the United States.Constraining WACCM with observations in the tropical band (30S-30N) using DART

  2. Assimilation of Altimeter Data into a Quasigeostrophic Model of the Gulf Stream System. Part 2; Assimilation Results

    Science.gov (United States)

    Capotondi, Antonietta; Holland, William R.; Malanotte-Rizzoli, Paola

    1995-01-01

    The improvement in the climatological behavior of a numerical model as a consequence of the assimilation of surface data is investigated. The model used for this study is a quasigeostrophic (QG) model of the Gulf Stream region. The data that have been assimilated are maps of sea surface height that have been obtained as the superposition of sea surface height variability deduced from the Geosat altimeter measurements and a mean field constructed from historical hydrographic data. The method used for assimilating the data is the nudging technique. Nudging has been implemented in such a way as to achieve a high degree of convergence of the surface model fields toward the observations. Comparisons of the assimilation results with available in situ observations show a significant improvement in the degree of realism of the climatological model behavior, with respect to the model in which no data are assimilated. The remaining discrepancies in the model mean circulation seem to be mainly associated with deficiencies in the mean component of the surface data that are assimilated. On the other hand, the possibility of building into the model more realistic eddy characteristics through the assimilation of the surface eddy field proves very successful in driving components of the mean model circulation that are in relatively good agreement with the available observations. Comparisons with current meter time series during a time period partially overlapping the Geosat mission show that the model is able to 'correctly' extrapolate the instantaneous surface eddy signals to depths of approximately 1500 m. The correlation coefficient between current meter and model time series varies from values close to 0.7 in the top 1500 m to values as low as 0.1-0.2 in the deep ocean.

  3. An integrated GIS application system for soil moisture data assimilation

    Science.gov (United States)

    Wang, Di; Shen, Runping; Huang, Xiaolong; Shi, Chunxiang

    2014-11-01

    The gaps in knowledge and existing challenges in precisely describing the land surface process make it critical to represent the massive soil moisture data visually and mine the data for further research.This article introduces a comprehensive soil moisture assimilation data analysis system, which is instructed by tools of C#, IDL, ArcSDE, Visual Studio 2008 and SQL Server 2005. The system provides integrated service, management of efficient graphics visualization and analysis of land surface data assimilation. The system is not only able to improve the efficiency of data assimilation management, but also comprehensively integrate the data processing and analysis tools into GIS development environment. So analyzing the soil moisture assimilation data and accomplishing GIS spatial analysis can be realized in the same system. This system provides basic GIS map functions, massive data process and soil moisture products analysis etc. Besides,it takes full advantage of a spatial data engine called ArcSDE to effeciently manage, retrieve and store all kinds of data. In the system, characteristics of temporal and spatial pattern of soil moiture will be plotted. By analyzing the soil moisture impact factors, it is possible to acquire the correlation coefficients between soil moisture value and its every single impact factor. Daily and monthly comparative analysis of soil moisture products among observations, simulation results and assimilations can be made in this system to display the different trends of these products. Furthermore, soil moisture map production function is realized for business application.

  4. Development Of A Data Assimilation Capability For RAPID

    Science.gov (United States)

    Emery, C. M.; David, C. H.; Turmon, M.; Hobbs, J.; Allen, G. H.; Famiglietti, J. S.

    2017-12-01

    The global decline of in situ observations associated with the increasing ability to monitor surface water from space motivates the creation of data assimilation algorithms that merge computer models and space-based observations to produce consistent estimates of terrestrial hydrology that fill the spatiotemporal gaps in observations. RAPID is a routing model based on the Muskingum method that is capable of estimating river streamflow over large scales with a relatively short computing time. This model only requires limited inputs: a reach-based river network, and lateral surface and subsurface flow into the rivers. The relatively simple model physics imply that RAPID simulations could be significantly improved by including a data assimilation capability. Here we present the early developments of such data assimilation approach into RAPID. Given the linear and matrix-based structure of the model, we chose to apply a direct Kalman filter, hence allowing for the preservation of high computational speed. We correct the simulated streamflows by assimilating streamflow observations and our early results demonstrate the feasibility of the approach. Additionally, the use of in situ gauges at continental scales motivates the application of our new data assimilation scheme to altimetry measurements from existing (e.g. EnviSat, Jason 2) and upcoming satellite missions (e.g. SWOT), and ultimately apply the scheme globally.

  5. Kinetics of 15NH4+ assimilation in Zea mays

    International Nuclear Information System (INIS)

    Magalhaes, J.R.; Ju, G.C.; Rich, P.J.; Rhodes, D.

    1990-01-01

    Comparative studies of 15 NH 4 + assimilation were undertaken with a GDH1-null mutant of Zea mays and a related (but not strictly isogenic) GDH1-positive wild type from which this mutant was derived. The kinetics of 15 NH 4 + assimilation into free amino acids and total reduced nitrogen were monitored in both roots and shoots of 2-week-old seedlings supplied with 5 millimolar 99% ( 15 NH 4 ) 2 SO 4 via the aerated root medium in hydroponic culture over a 24-h period. The GDH1-null mutant, with a 10- to 15-fold lower total root GDH activity in comparison to the wild type, was found to exhibit a 40 to 50% lower rate of 15 NH 4 + assimilation into total reduced nitrogen. The lower rates of 15 NH 4 + assimilation in the mutant was associated with lower rates of labeling of several free amino acids (including glutamate, glutamine-amino N, aspartate, asparagine-amino N, and alanine) in both roots and shoots of the mutant in comparison to the wild type. Qualitatively, these labeling kinetics appear consistent with a reduced flux of 15 N via glutamate in the GDH1-null mutant. However, the responses of the two genotypes to the potent inhibitor of glutamine synthetase, methionine sulfoximine, and differences in morphology of the two genotypes (particularly a lower shoot:root ratio in the GDH1-null mutant) urge caution in concluding that GDH1 is solely responsible for these differences in ammonia assimilation rate

  6. Nitrogen assimilation in denitrifier Bacillus azotoformans LMG 9581T.

    Science.gov (United States)

    Sun, Yihua; De Vos, Paul; Willems, Anne

    2017-12-01

    Until recently, it has not been generally known that some bacteria can contain the gene inventory for both denitrification and dissimilatory nitrate (NO 3 - )/nitrite (NO 2 - ) reduction to ammonium (NH 4 + ) (DNRA). Detailed studies of these microorganisms could shed light on the differentiating environmental drivers of both processes without interference of organism-specific variation. Genome analysis of Bacillus azotoformans LMG 9581 T shows a remarkable redundancy of dissimilatory nitrogen reduction, with multiple copies of each denitrification gene as well as DNRA genes nrfAH, but a reduced capacity for nitrogen assimilation, with no nas operon nor amtB gene. Here, we explored nitrogen assimilation in detail using growth experiments in media with different organic and inorganic nitrogen sources at different concentrations. Monitoring of growth, NO 3 - NO 2 - , NH 4 + concentration and N 2 O production revealed that B. azotoformans LMG 9581 T could not grow with NH 4 + as sole nitrogen source and confirmed the hypothesis of reduced nitrogen assimilation pathways. However, NH 4 + could be assimilated and contributed up to 50% of biomass if yeast extract was also provided. NH 4 + also had a significant but concentration-dependent influence on growth rate. The mechanisms behind these observations remain to be resolved but hypotheses for this deficiency in nitrogen assimilation are discussed. In addition, in all growth conditions tested a denitrification phenotype was observed, with all supplied NO 3 - converted to nitrous oxide (N 2 O).

  7. Multiscale Data Assimilation for Large-Eddy Simulations

    Science.gov (United States)

    Li, Z.; Cheng, X.; Gustafson, W. I., Jr.; Xiao, H.; Vogelmann, A. M.; Endo, S.; Toto, T.

    2017-12-01

    Large-eddy simulation (LES) is a powerful tool for understanding atmospheric turbulence, boundary layer physics and cloud development, and there is a great need for developing data assimilation methodologies that can constrain LES models. The U.S. Department of Energy Atmospheric Radiation Measurement (ARM) User Facility has been developing the capability to routinely generate ensembles of LES. The LES ARM Symbiotic Simulation and Observation (LASSO) project (https://www.arm.gov/capabilities/modeling/lasso) is generating simulations for shallow convection days at the ARM Southern Great Plains site in Oklahoma. One of major objectives of LASSO is to develop the capability to observationally constrain LES using a hierarchy of ARM observations. We have implemented a multiscale data assimilation (MSDA) scheme, which allows data assimilation to be implemented separately for distinct spatial scales, so that the localized observations can be effectively assimilated to constrain the mesoscale fields in the LES area of about 15 km in width. The MSDA analysis is used to produce forcing data that drive LES. With such LES workflow we have examined 13 days with shallow convection selected from the period May-August 2016. We will describe the implementation of MSDA, present LES results, and address challenges and opportunities for applying data assimilation to LES studies.

  8. Assimilating uncertain, dynamic and intermittent streamflow observations in hydrological models

    Science.gov (United States)

    Mazzoleni, Maurizio; Alfonso, Leonardo; Chacon-Hurtado, Juan; Solomatine, Dimitri

    2015-09-01

    Catastrophic floods cause significant socio-economical losses. Non-structural measures, such as real-time flood forecasting, can potentially reduce flood risk. To this end, data assimilation methods have been used to improve flood forecasts by integrating static ground observations, and in some cases also remote sensing observations, within water models. Current hydrologic and hydraulic research works consider assimilation of observations coming from traditional, static sensors. At the same time, low-cost, mobile sensors and mobile communication devices are becoming also increasingly available. The main goal and innovation of this study is to demonstrate the usefulness of assimilating uncertain streamflow observations that are dynamic in space and intermittent in time in the context of two different semi-distributed hydrological model structures. The developed method is applied to the Brue basin, where the dynamic observations are imitated by the synthetic observations of discharge. The results of this study show how model structures and sensors locations affect in different ways the assimilation of streamflow observations. In addition, it proves how assimilation of such uncertain observations from dynamic sensors can provide model improvements similar to those of streamflow observations coming from a non-optimal network of static physical sensors. This can be a potential application of recent efforts to build citizen observatories of water, which can make the citizens an active part in information capturing, evaluation and communication, helping simultaneously to improvement of model-based flood forecasting.

  9. Assimilation of GNSS radio occultation observations in GRAPES

    Science.gov (United States)

    Liu, Y.; Xue, J.

    2014-07-01

    This paper reviews the development of the global navigation satellite system (GNSS) radio occultation (RO) observations assimilation in the Global/Regional Assimilation and PrEdiction System (GRAPES) of China Meteorological Administration, including the choice of data to assimilate, the data quality control, the observation operator, the tuning of observation error, and the results of the observation impact experiments. The results indicate that RO data have a significantly positive effect on analysis and forecast at all ranges in GRAPES not only in the Southern Hemisphere where conventional observations are lacking but also in the Northern Hemisphere where data are rich. It is noted that a relatively simple assimilation and forecast system in which only the conventional and RO observation are assimilated still has analysis and forecast skill even after nine months integration, and the analysis difference between both hemispheres is gradually reduced with height when compared with NCEP (National Centers for Enviromental Prediction) analysis. Finally, as a result of the new onboard payload of the Chinese FengYun-3 (FY-3) satellites, the research status of the RO of FY-3 satellites is also presented.

  10. Assimilating the Future for Better Forecasts and Earlier Warnings

    Science.gov (United States)

    Du, H.; Wheatcroft, E.; Smith, L. A.

    2016-12-01

    Multi-model ensembles have become popular tools to account for some of the uncertainty due to model inadequacy in weather and climate simulation-based predictions. The current multi-model forecasts focus on combining single model ensemble forecasts by means of statistical post-processing. Assuming each model is developed independently or with different primary target variables, each is likely to contain different dynamical strengths and weaknesses. Using statistical post-processing, such information is only carried by the simulations under a single model ensemble: no advantage is taken to influence simulations under the other models. A novel methodology, named Multi-model Cross Pollination in Time, is proposed for multi-model ensemble scheme with the aim of integrating the dynamical information regarding the future from each individual model operationally. The proposed approach generates model states in time via applying data assimilation scheme(s) to yield truly "multi-model trajectories". It is demonstrated to outperform traditional statistical post-processing in the 40-dimensional Lorenz96 flow. Data assimilation approaches are originally designed to improve state estimation from the past to the current time. The aim of this talk is to introduce a framework that uses data assimilation to improve model forecasts at future time (not to argue for any one particular data assimilation scheme). Illustration of applying data assimilation "in the future" to provide early warning of future high-impact events is also presented.

  11. Uptake, accumulation and metabolic response of ferricyanide in weeping willows.

    Science.gov (United States)

    Yu, Xiao-Zhang; Gu, Ji-Dong

    2009-01-01

    The remediation potential and metabolic responses of plants to ferricyanide were investigated using pre-rooted weeping willows (Salix babylonica L.) grown hydroponically in growth chambers and treated with potassium ferricyanide. Positive responses were observed for the plants exposed to cyanide recovered in plant biomass was constant in all treatments, indicating that transport is a major limiting step for the uptake of ferricyanide by plants. The majority of the ferricyanide taken up from the growth media was possibly assimilated during transport through plants. The velocity of the removal processes can be described by Michaelis-Menten kinetics, and the half-saturation constant (K(M)) and the maximum removal capacity (v(max)) were estimated to be 228.1 mg CN L(-1) and 36.43 mg CN kg(-1) d(-1), respectively, using non-linear regression methods. These results suggest that weeping willows can take up, transport and assimilate ferricyanide; and phytoremediation is an option for cleaning up the environmental sites contaminated with cyanide complexes.

  12. Radioiodine uptake measurements in thyroid

    International Nuclear Information System (INIS)

    Kadireshn, A.; Kapur, S.C.; Samuel, J.R.; Mahajan, M.K.

    1988-01-01

    Evaluation of thyroid function can be carried out by measuring the uptake of orally administered radioactive iodine. The results of the thyroid uptake measurements for the period 1982-1987 in Christian Medical College, Ludhiana are presented here. About 3000 patients were screened during the analysis period. (author)

  13. Aquaporins and root water uptake

    Science.gov (United States)

    Water is one of the most critical resources limiting plant growth and crop productivity, and root water uptake is an important aspect of plant physiology governing plant water use and stress tolerance. Pathways of root water uptake are complex and are affected by root structure and physiological res...

  14. Uptake of nuclides by plants

    International Nuclear Information System (INIS)

    Greger, Maria

    2004-04-01

    This review on plant uptake of elements has been prepared to demonstrate how plants take up different elements. The work discusses the nutrient elements, as well as the general uptake and translocation in plants, both via roots and by foliar absorption. Knowledge of the uptake by the various elements within the periodic system is then reviewed. The work also discusses transfer factors (TF) as well as difficulties using TF to understand the uptake by plants. The review also focuses on species differences. Knowledge necessary to understand and calculate plant influence on radionuclide recirculation in the environment is discussed, in which the plant uptake of a specific nuclide and the fate of that nuclide in the plant must be understood. Plants themselves determine the uptake, the soil/sediment determines the availability of the nuclides and the nuclides themselves can interact with each other, which also influences the uptake. Consequently, it is not possible to predict the nuclide uptake in plants by only analysing the nuclide concentration of the soil/substrate

  15. Uptake of nuclides by plants

    Energy Technology Data Exchange (ETDEWEB)

    Greger, Maria [Stockholm Univ. (Sweden). Dept. of Botany

    2004-04-01

    This review on plant uptake of elements has been prepared to demonstrate how plants take up different elements. The work discusses the nutrient elements, as well as the general uptake and translocation in plants, both via roots and by foliar absorption. Knowledge of the uptake by the various elements within the periodic system is then reviewed. The work also discusses transfer factors (TF) as well as difficulties using TF to understand the uptake by plants. The review also focuses on species differences. Knowledge necessary to understand and calculate plant influence on radionuclide recirculation in the environment is discussed, in which the plant uptake of a specific nuclide and the fate of that nuclide in the plant must be understood. Plants themselves determine the uptake, the soil/sediment determines the availability of the nuclides and the nuclides themselves can interact with each other, which also influences the uptake. Consequently, it is not possible to predict the nuclide uptake in plants by only analysing the nuclide concentration of the soil/substrate.

  16. Storm surge model based on variational data assimilation method

    Directory of Open Access Journals (Sweden)

    Shi-li Huang

    2010-06-01

    Full Text Available By combining computation and observation information, the variational data assimilation method has the ability to eliminate errors caused by the uncertainty of parameters in practical forecasting. It was applied to a storm surge model based on unstructured grids with high spatial resolution meant for improving the forecasting accuracy of the storm surge. By controlling the wind stress drag coefficient, the variation-based model was developed and validated through data assimilation tests in an actual storm surge induced by a typhoon. In the data assimilation tests, the model accurately identified the wind stress drag coefficient and obtained results close to the true state. Then, the actual storm surge induced by Typhoon 0515 was forecast by the developed model, and the results demonstrate its efficiency in practical application.

  17. a Thtee-Dimensional Variational Assimilation Scheme for Satellite Aod

    Science.gov (United States)

    Liang, Y.; Zang, Z.; You, W.

    2018-04-01

    A three-dimensional variational data assimilation scheme is designed for satellite AOD based on the IMPROVE (Interagency Monitoring of Protected Visual Environments) equation. The observation operator that simulates AOD from the control variables is established by the IMPROVE equation. All of the 16 control variables in the assimilation scheme are the mass concentrations of aerosol species from the Model for Simulation Aerosol Interactions and Chemistry scheme, so as to take advantage of this scheme in providing comprehensive analyses of species concentrations and size distributions as well as be calculating efficiently. The assimilation scheme can save computational resources as the IMPROVE equation is a quadratic equation. A single-point observation experiment shows that the information from the single-point AOD is effectively spread horizontally and vertically.

  18. Data Assimilation in Hydrodynamic Models of Continental Shelf Seas

    DEFF Research Database (Denmark)

    Sørensen, Jacob Viborg Tornfeldt

    2004-01-01

    . Assimilation of sea surface temperature and parameter estimation in hydrodynamic models are also considered. The main focus has been on the development of robust and efficient techniques applicable in real operational settings. The applied assimilation techniques all use a Kalman filter approach. They consist....... The assimilation schemes used in this work are primarily based on two ensemble based schemes, the Ensemble Kalman Filter and the Reduced Rank Square Root Kalman Filter. In order to investigate the applicability of these and derived schemes, the sensitivity to filter parameters, nonlinearity and bias is examined...... in artificial tests. Approximate schemes, which are theoretically presented as using regularised Kalman gains, are introduced and successfully applied in artificial as well real case scenarios. Particularly, distant dependent and slowly time varying or constant Kalman gains are shown to possess good hindcast...

  19. The Impact of the Assimilation of Aquarius Sea Surface Salinity Data in the GEOS Ocean Data Assimilation System

    Science.gov (United States)

    Vernieres, Guillaume Rene Jean; Kovach, Robin M.; Keppenne, Christian L.; Akella, Santharam; Brucker, Ludovic; Dinnat, Emmanuel Phillippe

    2014-01-01

    Ocean salinity and temperature differences drive thermohaline circulations. These properties also play a key role in the ocean-atmosphere coupling. With the availability of L-band space-borne observations, it becomes possible to provide global scale sea surface salinity (SSS) distribution. This study analyzes globally the along-track (Level 2) Aquarius SSS retrievals obtained using both passive and active L-band observations. Aquarius alongtrack retrieved SSS are assimilated into the ocean data assimilation component of Version 5 of the Goddard Earth Observing System (GEOS-5) assimilation and forecast model. We present a methodology to correct the large biases and errors apparent in Version 2.0 of the Aquarius SSS retrieval algorithm and map the observed Aquarius SSS retrieval into the ocean models bulk salinity in the topmost layer. The impact of the assimilation of the corrected SSS on the salinity analysis is evaluated by comparisons with insitu salinity observations from Argo. The results show a significant reduction of the global biases and RMS of observations-minus-forecast differences at in-situ locations. The most striking results are found in the tropics and southern latitudes. Our results highlight the complementary role and problems that arise during the assimilation of salinity information from in-situ (Argo) and space-borne surface (SSS) observations

  20. Incontinence Treatment: Dietary Tips

    Science.gov (United States)

    ... helpful, please consider supporting IFFGD with a small tax-deductible donation. Lifestyle Changes Dietary Tips Medication Bowel ... arises requiring an expert’s care. © Copyright 1998-2018 International Foundation for Functional Gastrointestinal Disorders, Inc. (IFFGD). All ...

  1. Dietary Supplement Fact Sheets

    Science.gov (United States)

    ... Primary Mitochondrial Disorders Weight Loss A Acai Aloe Vera Anabolic Steroids Antioxidants (see Exercise and Athletic Performance ) ... Pills (see Weight Loss ) Dietary Supplements Vitamin D E Echinacea Ephedra Essiac/Flor-Essence European Elder Evening ...

  2. Dietary Supplement Ingredient Database

    Science.gov (United States)

    ... and US Department of Agriculture Dietary Supplement Ingredient Database Toggle navigation Menu Home About DSID Mission Current ... values can be saved to build a small database or add to an existing database for national, ...

  3. Assimilation of satellite color observations in a coupled ocean GCM-ecosystem model

    Science.gov (United States)

    Sarmiento, Jorge L.

    1992-01-01

    Monthly average coastal zone color scanner (CZCS) estimates of chlorophyll concentration were assimilated into an ocean global circulation model(GCM) containing a simple model of the pelagic ecosystem. The assimilation was performed in the simplest possible manner, to allow the assessment of whether there were major problems with the ecosystem model or with the assimilation procedure. The current ecosystem model performed well in some regions, but failed in others to assimilate chlorophyll estimates without disrupting important ecosystem properties. This experiment gave insight into those properties of the ecosystem model that must be changed to allow data assimilation to be generally successful, while raising other important issues about the assimilation procedure.

  4. Biomass assimilation in coupled ecohydrodynamical model of the Mediterranean Sea

    Science.gov (United States)

    Crispi, G.; Bournaski, E.; Crise, A.

    2003-04-01

    Data assimilation has raised new interest in the last years in the context of the environmental sciences. The swift increment of the attention paid to it in oceanography is due to the coming age of operational services for the marine environment which is going to dramatically increase the demand for accurate, timely and reliable estimates of the space and time distribution both for physical and in a near future for biogeochemical fields. Data assimilation combines information derived from measurements with knowledge of the rules that govern the evolution of the system of interest through formalization and implementation in numerical models. The importance of ocean data assimilation has been recognized by several international programmes as JGOFS, GOOS and CLIVAR. This work presents an eco-hydrodynamic model of the Mediterranean Sea developed at the Istituto Nazionale di Oceanografia e di Geofisica Sperimentale - OGS, Trieste, Italy. It includes 3-D MOM-based hydrodynamics of the Mediterranean Sea, coupled with biochemical model of Nitrogen, Phytoplankton, Zooplankton, and Detritus (NPZD). Monthly mean wind forcings are adopted to force this MOM-NPZD model. For better prediction and analysis of N, P, Z and D distributions in the sea the model needs data assimilation from biomass observations on the sea surface. Chosen approach for evaluating performances of data assimilation techniques in coupled model is the definition of a twin experiment testbed where a reference run is carried out assuming its result as the truth. We define a sampling strategy to obtain different datasets to be incorporated in another ecological model in successive runs in order to appraise the potential of the data assimilation and sampling strategy. The runs carried out with different techniques and different spatio-temporal coverages are compared in order to evaluate the sensitivity to different coverage of dataset. The discussed alternative way is to assume the ecosystem at steady state and

  5. Ensemble streamflow assimilation with the National Water Model.

    Science.gov (United States)

    Rafieeinasab, A.; McCreight, J. L.; Noh, S.; Seo, D. J.; Gochis, D.

    2017-12-01

    Through case studies of flooding across the US, we compare the performance of the National Water Model (NWM) data assimilation (DA) scheme to that of a newly implemented ensemble Kalman filter approach. The NOAA National Water Model (NWM) is an operational implementation of the community WRF-Hydro modeling system. As of August 2016, the NWM forecasts of distributed hydrologic states and fluxes (including soil moisture, snowpack, ET, and ponded water) over the contiguous United States have been publicly disseminated by the National Center for Environmental Prediction (NCEP) . It also provides streamflow forecasts at more than 2.7 million river reaches up to 30 days in advance. The NWM employs a nudging scheme to assimilate more than 6,000 USGS streamflow observations and provide initial conditions for its forecasts. A problem with nudging is how the forecasts relax quickly to open-loop bias in the forecast. This has been partially addressed by an experimental bias correction approach which was found to have issues with phase errors during flooding events. In this work, we present an ensemble streamflow data assimilation approach combining new channel-only capabilities of the NWM and HydroDART (a coupling of the offline WRF-Hydro model and NCAR's Data Assimilation Research Testbed; DART). Our approach focuses on the single model state of discharge and incorporates error distributions on channel-influxes (overland and groundwater) in the assimilation via an ensemble Kalman filter (EnKF). In order to avoid filter degeneracy associated with a limited number of ensemble at large scale, DART's covariance inflation (Anderson, 2009) and localization capabilities are implemented and evaluated. The current NWM data assimilation scheme is compared to preliminary results from the EnKF application for several flooding case studies across the US.

  6. Assimilation of satellite altimeter data into an open ocean model

    Science.gov (United States)

    Vogeler, Armin; SchröTer, Jens

    1995-08-01

    Geosat sea surface height data are assimilated into an eddy-resolving quasi-geostrophic open ocean model using the adjoint technique. The method adjusts the initial conditions for all layers and is successful on the timescale of a few weeks. Time-varying values for the open boundaries are prescribed by a much larger quasi-geostrophic model of the Antarctic Circumpolar Current (ACC). Both models have the same resolution of approximately 20×20 km (1/3°×1/6°), have three layers, and include realistic bottom topography and coastlines. The open model box is embedded in the African sector of the ACC. For continuous assimilation of satellite data into the larger model the nudging technique is applied. These results are used for the adjoint optimization procedure as boundary conditions and as a first guess for the initial condition. For the open model box the difference between model and satellite sea surface height that remains after the nudging experiment amounts to a 19-cm root-mean-square error (rmse). By assimilation into the regional model this value can be reduced to a 6-cm rmse for an assimilation period of 20 days. Several experiments which attempt to improve the convergence of the iterative optimization method are reported. Scaling and regularization by smoothing have to be applied carefully. Especially during the first 10 iterations, the convergence can be improved considerably by low-pass filtering of the cost function gradient. The result of a perturbation experiment shows that for longer assimilation periods the influence of the boundary values becomes dominant and they should be determined inversely by data assimilation into the open ocean model.

  7. Assimilation scheme of the Mediterranean Forecasting System: operational implementation

    Directory of Open Access Journals (Sweden)

    E. Demirov

    Full Text Available This paper describes the operational implementation of the data assimilation scheme for the Mediterranean Forecasting System Pilot Project (MFSPP. The assimilation scheme, System for Ocean Forecast and Analysis (SOFA, is a reduced order Optimal Interpolation (OI scheme. The order reduction is achieved by projection of the state vector into vertical Empirical Orthogonal Functions (EOF. The data assimilated are Sea Level Anomaly (SLA and temperature profiles from Expandable Bathy Termographs (XBT. The data collection, quality control, assimilation and forecast procedures are all done in Near Real Time (NRT. The OI is used intermittently with an assimilation cycle of one week so that an analysis is produced once a week. The forecast is then done for ten days following the analysis day. The root mean square (RMS between the model forecast and the analysis (the forecast RMS is below 0.7°C in the surface layers and below 0.2°C in the layers deeper than 200 m for all the ten forecast days. The RMS between forecast and initial condition (persistence RMS is higher than forecast RMS after the first day. This means that the model improves forecast with respect to persistence. The calculation of the misfit between the forecast and the satellite data suggests that the model solution represents well the main space and time variability of the SLA except for a relatively short period of three – four weeks during the summer when the data show a fast transition between the cyclonic winter and anti-cyclonic summer regimes. This occurs in the surface layers that are not corrected by our assimilation scheme hypothesis. On the basis of the forecast skill scores analysis, conclusions are drawn about future improvements.

    Key words. Oceanography; general (marginal and semi-enclosed seas; numerical modeling; ocean prediction

  8. Assimilation scheme of the Mediterranean Forecasting System: operational implementation

    Directory of Open Access Journals (Sweden)

    E. Demirov

    2003-01-01

    Full Text Available This paper describes the operational implementation of the data assimilation scheme for the Mediterranean Forecasting System Pilot Project (MFSPP. The assimilation scheme, System for Ocean Forecast and Analysis (SOFA, is a reduced order Optimal Interpolation (OI scheme. The order reduction is achieved by projection of the state vector into vertical Empirical Orthogonal Functions (EOF. The data assimilated are Sea Level Anomaly (SLA and temperature profiles from Expandable Bathy Termographs (XBT. The data collection, quality control, assimilation and forecast procedures are all done in Near Real Time (NRT. The OI is used intermittently with an assimilation cycle of one week so that an analysis is produced once a week. The forecast is then done for ten days following the analysis day. The root mean square (RMS between the model forecast and the analysis (the forecast RMS is below 0.7°C in the surface layers and below 0.2°C in the layers deeper than 200 m for all the ten forecast days. The RMS between forecast and initial condition (persistence RMS is higher than forecast RMS after the first day. This means that the model improves forecast with respect to persistence. The calculation of the misfit between the forecast and the satellite data suggests that the model solution represents well the main space and time variability of the SLA except for a relatively short period of three – four weeks during the summer when the data show a fast transition between the cyclonic winter and anti-cyclonic summer regimes. This occurs in the surface layers that are not corrected by our assimilation scheme hypothesis. On the basis of the forecast skill scores analysis, conclusions are drawn about future improvements. Key words. Oceanography; general (marginal and semi-enclosed seas; numerical modeling; ocean prediction

  9. Cadmium uptake by plants

    Energy Technology Data Exchange (ETDEWEB)

    Haghiri, F.

    1973-01-01

    Absorption of /sup 115m/Cd by soybean (Gylcine max l.) plants via foliar and root systems and translocation into the seed was determined. The uptake of /sup 115m/Cd by soybeans via the root system was more efficient than that of the foliar placement. Growth and Cd concentrations of soybean and wheat (Triticum aestivum l.) tops were influenced by soil-applied Cd. In both crops, the Cd concentration of plant tops increased while yield decreased with increasing levels of applied Cd. Cadmium toxicitiy began to occur in both crops at the lowest level of soil applied Cd (2.5 ppM). With soybean plants, Cd toxicity symptoms resembled fe chlorosis. For wheat plants there were no visual symptoms other than the studied growth. The relative concentration of Cd found in several vegetable crops varied depending on the plant species. The relative Cd concentration in descending order for various vegetables was lettuce (Lactuca sativa l.) > radish top (Raphanus sativus l.) > celery stalk (Apium graveolens l.) > celery leaves greater than or equal to green pepper (Capsicum frutescens l.) > radish roots.

  10. Light intensity affects the uptake and metabolism of glycine by pakchoi (Brassica chinensis L.)

    Science.gov (United States)

    Ma, Qingxu; Cao, Xiaochuang; Wu, Lianghuan; Mi, Wenhai; Feng, Ying

    2016-02-01

    The uptake of glycine by pakchoi (Brassica chinensis L.), when supplied as single N-source or in a mixture of glycine and inorganic N, was studied at different light intensities under sterile conditions. At the optimal intensity (414 μmol m-2 s-1) for plant growth, glycine, nitrate, and ammonium contributed 29.4%, 39.5%, and 31.1% shoot N, respectively, and light intensity altered the preferential absorption of N sources. The lower 15N-nitrate in root but higher in shoot and the higher 15N-glycine in root but lower in shoot suggested that most 15N-nitrate uptake by root transported to shoot rapidly, with the shoot being important for nitrate assimilation, and the N contribution of glycine was limited by post-uptake metabolism. The amount of glycine that was taken up by the plant was likely limited by root uptake at low light intensities and by the metabolism of ammonium produced by glycine at high light intensities. These results indicate that pakchoi has the ability to uptake a large quantity of glycine, but that uptake is strongly regulated by light intensity, with metabolism in the root inhibiting its N contribution.

  11. The uptake of radioactive phosphorus by brown trout (Salmo trutta L.) from water and food

    International Nuclear Information System (INIS)

    Winpenny, K.; Knowles, J.F.; Smith, D.L.

    1998-01-01

    Brown trout were exposed to 32 P in their tank water (7.4 Bq l -1 ) and the uptake to muscle followed over 6 weeks. A steady-state concentration factor (C ss ) of 1.7 and a biological half-time for clearance (tb1/2)) of 45 days were calculated from the results. The low C ss ) indicates that uptake from water is not a major route of 32 P accumulation in these fish. Brown trout were given a single 32 P-spiked meal, and the uptake and clearance in muscle, liver and blood followed over 6 weeks. Assimilation of the isotope by these organs was low, the maximum activity in whole muscle reaching only 0.2-0.4% of that in the meal with lower values in the other two organs. There was no appreciable clearance of 32 P from muscle during the experiment. The slow clearance of 32 P after uptake from water and lack of any clearance after uptake from food indicates that the C ss for this isotope following uptake by either route is likely to depend on radioactive decay rather than intake rate and physiological clearance. (author)

  12. Nitrogen isotope fractionation during N uptake via arbuscular mycorrhizal and ectomycorrhizal fungi into grey alder.

    Science.gov (United States)

    Schweiger, Peter F

    2016-10-20

    Arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi affect plant nitrogen (N) dynamics. Plant N isotope patterns have been used to characterise the contribution of ECM fungi to plant N uptake. By quantifying and comparing the effects of an AM and an ECM fungus on growth, N uptake and isotopic composition of one host plant grown at different relative N supply levels, the aim of this study was to improve the mechanistic understanding of natural 15 N abundance patterns in mycorrhizal plants and their underlying causes. Grey alders were inoculated with one ECM fungus or one AM fungus or left non-mycorrhizal. Plants were grown under semi-hydroponic conditions and were supplied with three rates of relative N supply ranging from deficient to luxurious. Neither mycorrhizal fungus increased plant growth or N uptake. AM root colonisation had no effect on whole plant δ 15 N and decreased foliar δ 15 N only under N deficiency. The roots of these plants were 15 N-enriched. ECM root colonisation consistently decreased foliar and whole plant δ 15 N. It is concluded, that both mycorrhizal fungi contributed to plant N uptake into the shoot. Nitrogen isotope fractionation during N assimilation and transformations in fungal mycelia is suggested to have resulted in plants receiving 15 N-depleted N via the mycorrhizal uptake pathways. Negative mycorrhizal growth effects are explained by symbiotic resource trade on carbon and N and decreased direct plant N uptake. Copyright © 2016 Elsevier GmbH. All rights reserved.

  13. Assimilation of LAI time-series in crop production models

    Science.gov (United States)

    Kooistra, Lammert; Rijk, Bert; Nannes, Louis

    2014-05-01

    Agriculture is worldwide a large consumer of freshwater, nutrients and land. Spatial explicit agricultural management activities (e.g., fertilization, irrigation) could significantly improve efficiency in resource use. In previous studies and operational applications, remote sensing has shown to be a powerful method for spatio-temporal monitoring of actual crop status. As a next step, yield forecasting by assimilating remote sensing based plant variables in crop production models would improve agricultural decision support both at the farm and field level. In this study we investigated the potential of remote sensing based Leaf Area Index (LAI) time-series assimilated in the crop production model LINTUL to improve yield forecasting at field level. The effect of assimilation method and amount of assimilated observations was evaluated. The LINTUL-3 crop production model was calibrated and validated for a potato crop on two experimental fields in the south of the Netherlands. A range of data sources (e.g., in-situ soil moisture and weather sensors, destructive crop measurements) was used for calibration of the model for the experimental field in 2010. LAI from cropscan field radiometer measurements and actual LAI measured with the LAI-2000 instrument were used as input for the LAI time-series. The LAI time-series were assimilated in the LINTUL model and validated for a second experimental field on which potatoes were grown in 2011. Yield in 2011 was simulated with an R2 of 0.82 when compared with field measured yield. Furthermore, we analysed the potential of assimilation of LAI into the LINTUL-3 model through the 'updating' assimilation technique. The deviation between measured and simulated yield decreased from 9371 kg/ha to 8729 kg/ha when assimilating weekly LAI measurements in the LINTUL model over the season of 2011. LINTUL-3 furthermore shows the main growth reducing factors, which are useful for farm decision support. The combination of crop models and sensor

  14. Multivariate and multiscale data assimilation in terrestrial systems: a review.

    Science.gov (United States)

    Montzka, Carsten; Pauwels, Valentijn R N; Franssen, Harrie-Jan Hendricks; Han, Xujun; Vereecken, Harry

    2012-11-26

    More and more terrestrial observational networks are being established to monitor climatic, hydrological and land-use changes in different regions of the World. In these networks, time series of states and fluxes are recorded in an automated manner, often with a high temporal resolution. These data are important for the understanding of water, energy, and/or matter fluxes, as well as their biological and physical drivers and interactions with and within the terrestrial system. Similarly, the number and accuracy of variables, which can be observed by spaceborne sensors, are increasing. Data assimilation (DA) methods utilize these observations in terrestrial models in order to increase process knowledge as well as to improve forecasts for the system being studied. The widely implemented automation in observing environmental states and fluxes makes an operational computation more and more feasible, and it opens the perspective of short-time forecasts of the state of terrestrial systems. In this paper, we review the state of the art with respect to DA focusing on the joint assimilation of observational data precedents from different spatial scales and different data types. An introduction is given to different DA methods, such as the Ensemble Kalman Filter (EnKF), Particle Filter (PF) and variational methods (3/4D-VAR). In this review, we distinguish between four major DA approaches: (1) univariate single-scale DA (UVSS), which is the approach used in the majority of published DA applications, (2) univariate multiscale DA (UVMS) referring to a methodology which acknowledges that at least some of the assimilated data are measured at a different scale than the computational grid scale, (3) multivariate single-scale DA (MVSS) dealing with the assimilation of at least two different data types, and (4) combined multivariate multiscale DA (MVMS). Finally, we conclude with a discussion on the advantages and disadvantages of the assimilation of multiple data types in a

  15. Multivariate and Multiscale Data Assimilation in Terrestrial Systems: A Review

    Directory of Open Access Journals (Sweden)

    Harry Vereecken

    2012-11-01

    Full Text Available More and more terrestrial observational networks are being established to monitor climatic, hydrological and land-use changes in different regions of the World. In these networks, time series of states and fluxes are recorded in an automated manner, often with a high temporal resolution. These data are important for the understanding of water, energy, and/or matter fluxes, as well as their biological and physical drivers and interactions with and within the terrestrial system. Similarly, the number and accuracy of variables, which can be observed by spaceborne sensors, are increasing. Data assimilation (DA methods utilize these observations in terrestrial models in order to increase process knowledge as well as to improve forecasts for the system being studied. The widely implemented automation in observing environmental states and fluxes makes an operational computation more and more feasible, and it opens the perspective of short-time forecasts of the state of terrestrial systems. In this paper, we review the state of the art with respect to DA focusing on the joint assimilation of observational data precedents from different spatial scales and different data types. An introduction is given to different DA methods, such as the Ensemble Kalman Filter (EnKF, Particle Filter (PF and variational methods (3/4D-VAR. In this review, we distinguish between four major DA approaches: (1 univariate single-scale DA (UVSS, which is the approach used in the majority of published DA applications, (2 univariate multiscale DA (UVMS referring to a methodology which acknowledges that at least some of the assimilated data are measured at a different scale than the computational grid scale, (3 multivariate single-scale DA (MVSS dealing with the assimilation of at least two different data types, and (4 combined multivariate multiscale DA (MVMS. Finally, we conclude with a discussion on the advantages and disadvantages of the assimilation of multiple data types in a

  16. Reconstruction of Historical Weather by Assimilating Old Weather Diary Data

    Science.gov (United States)

    Neluwala, P.; Yoshimura, K.; Toride, K.; Hirano, J.; Ichino, M.; Okazaki, A.

    2017-12-01

    Climate can control not only human life style but also other living beings. It is important to investigate historical climate to understand the current and future climates. Information about daily weather can give a better understanding of past life on earth. Long-term weather influences crop calendar as well as the development of civilizations. Unfortunately, existing reconstructed daily weather data are limited to 1850s due to the availability of instrumental data. The climate data prior to that are derived from proxy materials (e.g., tree-ring width, ice core isotopes, etc.) which are either in annual or decadal scale. However, there are many historical documents which contain information about weather such as personal diaries. In Japan, around 20 diaries in average during the 16th - 19th centuries have been collected and converted into a digitized form. As such, diary data exist in many other countries. This study aims to reconstruct historical daily weather during the 18th and 19th centuries using personal daily diaries which have analogue weather descriptions such as `cloudy' or `sunny'. A recent study has shown the possibility of assimilating coarse weather data using idealized experiments. We further extend this study by assimilating modern weather descriptions similar to diary data in recent periods. The Global Spectral model (GSM) of National Centers for Environmental Prediction (NCEP) is used to reconstruct weather with the Local Ensemble Kalman filter (LETKF). Descriptive data are first converted to model variables such as total cloud cover (TCC), solar radiation and precipitation using empirical relationships. Those variables are then assimilated on a daily basis after adding random errors to consider the uncertainty of actual diary data. The assimilation of downward short wave solar radiation using weather descriptions improves RMSE from 64.3 w/m2 to 33.0 w/m2 and correlation coefficient (R) from 0.5 to 0.8 compared with the case without any

  17. SMAP Data Assimilation at NASA SPoRT

    Science.gov (United States)

    Blankenship, Clay B.; Case, Jonathan L.; Zavodsky, Bradley T.

    2016-01-01

    The NASA Short-Term Prediction Research and Transition (SPoRT) Center maintains a near-real- time run of the Noah Land Surface Model within the Land Information System (LIS) at 3-km resolution. Soil moisture products from this model are used by several NOAA/National Weather Service Weather Forecast Offices for flood and drought situational awareness. We have implemented assimilation of soil moisture retrievals from the Soil Moisture Ocean Salinity (SMOS) and Soil Moisture Active/ Passive (SMAP) satellites, and are now evaluating the SMAP assimilation. The SMAP-enhanced LIS product is planned for public release by October 2016.

  18. Assimilation of radar-based nowcast into HIRLAM NWP model

    DEFF Research Database (Denmark)

    Jensen, David Getreuer; Petersen, Claus; Rasmussen, Michael R.

    2015-01-01

    The present study introduces a nowcast scheme that assimilates radar extrapolation data (RED) into a nowcasting version of the high resolution limited area model (HIRLAM) numerical weather prediction (NWP) model covering the area of Denmark. The RED are based on the Co-TREC (tracking radar echoes...... by correlation) methodology and are generated from cleaned radar mosaics from the Danish weather radar network. The assimilation technique is a newly developed method that increases model precipitation by increasing low-level convergence and decreasing convergence aloft in order to increase the vertical velocity....... The level of improved predictability relies on the RED quality, which again relies on the type of event....

  19. Data assimilation in integrated hydrological modeling using ensemble Kalman filtering

    DEFF Research Database (Denmark)

    Rasmussen, Jørn; Madsen, H.; Jensen, Karsten Høgh

    2015-01-01

    Groundwater head and stream discharge is assimilated using the ensemble transform Kalman filter in an integrated hydrological model with the aim of studying the relationship between the filter performance and the ensemble size. In an attempt to reduce the required number of ensemble members...... and estimating parameters requires a much larger ensemble size than just assimilating groundwater head observations. However, the required ensemble size can be greatly reduced with the use of adaptive localization, which by far outperforms distance-based localization. The study is conducted using synthetic data...

  20. The uptake of tocopherols by RAW 264.7 macrophages

    OpenAIRE

    Papas Andreas M; Huang Thomas; Stone William L; Gao Rong; Qui Min

    2002-01-01

    Abstract Background Alpha-Tocopherol and gamma-tocopherol are the two major forms of vitamin E in human plasma and the primary lipid soluble antioxidants. The dietary intake of gamma-tocopherol is generally higher than that of alpha-tocopherol. However, alpha-tocopherol plasma levels are about four fold higher than those of gamma-tocopherol. Among other factors, a preferential cellular uptake of gamma-tocopherol over alpha-tocopherol could contribute to the observed higher plasma alpha-tocoph...

  1. Coupled atmosphere and land-surface assimilation of surface observations with a single column model and ensemble data assimilation

    Science.gov (United States)

    Rostkier-Edelstein, Dorita; Hacker, Joshua P.; Snyder, Chris

    2014-05-01

    Numerical weather prediction and data assimilation models are composed of coupled atmosphere and land-surface (LS) components. If possible, the assimilation procedure should be coupled so that observed information in one module is used to correct fields in the coupled module. There have been some attempts in this direction using optimal interpolation, nudging and 2/3DVAR data assimilation techniques. Aside from satellite remote sensed observations, reference height in-situ observations of temperature and moisture have been used in these studies. Among other problems, difficulties in coupled atmosphere and LS assimilation arise as a result of the different time scales characteristic of each component and the unsteady correlation between these components under varying flow conditions. Ensemble data-assimilation techniques rely on flow dependent observations-model covariances. Provided that correlations and covariances between land and atmosphere can be adequately simulated and sampled, ensemble data assimilation should enable appropriate assimilation of observations simultaneously into the atmospheric and LS states. Our aim is to explore assimilation of reference height in-situ temperature and moisture observations into the coupled atmosphere-LS modules(simultaneously) in NCAR's WRF-ARW model using the NCAR's DART ensemble data-assimilation system. Observing system simulation experiments (OSSEs) are performed using the single column model (SCM) version of WRF. Numerical experiments during a warm season are centered on an atmospheric and soil column in the South Great Plains. Synthetic observations are derived from "truth" WRF-SCM runs for a given date,initialized and forced using North American Regional Reanalyses (NARR). WRF-SCM atmospheric and LS ensembles are created by mixing the atmospheric and soil NARR profile centered on a given date with that from another day (randomly chosen from the same season) with weights drawn from a logit-normal distribution. Three

  2. Hindcasting and Forecasting of Surface Flow Fields through Assimilating High Frequency Remotely Sensing Radar Data

    Directory of Open Access Journals (Sweden)

    Lei Ren

    2017-09-01

    Full Text Available In order to improve the forecasting ability of numerical models, a sequential data assimilation scheme, nudging, was applied to blend remotely sensing high-frequency (HF radar surface currents with results from a three-dimensional numerical, EFDC (Environmental Fluid Dynamics Code model. For the first time, this research presents the most appropriate nudging parameters, which were determined from sensitivity experiments. To examine the influence of data assimilation cycle lengths on forecasts and to extend forecasting improvements, the duration of data assimilation cycles was studied through assimilating linearly interpolated temporal radar data. Data assimilation nudging parameters have not been previously analyzed. Assimilation of HF radar measurements at each model computational timestep outperformed those assimilation models using longer data assimilation cycle lengths; root-mean-square error (RMSE values of both surface velocity components during a 12 h model forecasting period indicated that surface flow fields were significantly improved when implementing nudging assimilation at each model computational timestep. The Data Assimilation Skill Score (DASS technique was used to quantitatively evaluate forecast improvements. The averaged values of DASS over the data assimilation domain were 26% and 33% for east–west and north–south velocity components, respectively, over the half-day forecasting period. Correlation of Averaged Kinetic Energy (AKE was improved by more than 10% in the best data assimilation model. Time series of velocity components and surface flow fields were presented to illustrate the improvement resulting from data assimilation application over time.

  3. Assimilation of Leaf Area Index and Soil Wetness Index into the ISBA-A-gs land surface model over France

    Science.gov (United States)

    Barbu, A. L.; Calvet, J.-C.; Lafont, S.

    2012-04-01

    2010. In the model simulation, the start of the growing season tends to occur later than in the observations. Similarly, the senescence phase is delayed. The assimilation is able to reduce this bias. The lack of detailed knowledge of the farming practices and other shortcomings of the model are compensated by the assimilation of the remotely sensed LAI. The analyzed seasonal LAI cycle across large cropland regions (north-eastern France) is closer to the observations. A coherent impact of LAI and soil moisture updates on the carbon fluxes is noticed. Increased LAI values in the growing season due to data assimilation corrections trigger an increased photosynthetic activity. Similarly, lower LAI values corresponding to the senescence phase cause a decrease in the carbon dioxide uptake when compared to the original model simulations.

  4. Carbon cycling of European croplands: A framework for the assimilation of optical and microwave Earth observation data

    Science.gov (United States)

    Revill, Andrew; Sus, Oliver; Williams, Mathew

    2013-04-01

    Croplands are traditionally managed to maximise the production of food, feed, fibre and bioenergy. Advancements in agricultural technologies, together with land-use change, have approximately doubled World grain harvests over the past 50 years. Cropland ecosystems also play a significant role in the global carbon (C) cycle and, through changes to C storage in response to management activities, they can provide opportunities for climate change mitigation. However, quantifying and understanding the cropland C cycle is complex, due to variable environmental drivers, varied management practices and often highly heterogeneous landscapes. Efforts to upscale processes using simulation models must resolve these challenges. Here we show how data assimilation (DA) approaches can link C cycle modelling to Earth observation (EO) and reduce uncertainty in upscaling. We evaluate a framework for the assimilation of leaf area index (LAI) time series, empirically derived from EO optical and radar sensors, for state-updating a model of crop development and C fluxes. Sensors are selected with fine spatial resolutions (20-50 m) to resolve variability across field sizes typically used in European agriculture. Sequential DA is used to improve the canopy development simulation, which is validated by comparing time-series LAI and net ecosystem exchange (NEE) predictions to independent ground measurements and eddy covariance observations at multiple European cereal crop sites. Significant empirical relationships were established between the LAI ground measurements and the optical reflectance and radar backscatter, which allowed for single LAI calibrations being valid for all the cropland sites for each sensor. The DA of all EO LAI estimates results indicated clear adjustments in LAI and an enhanced representation of daily CO2 exchanges, particularly around the time of peak C uptake. Compared to the simulation without DA, the assimilation of all EO LAI estimates improved the predicted at

  5. Dietary supplements for football.

    Science.gov (United States)

    Hespel, P; Maughan, R J; Greenhaff, P L

    2006-07-01

    Physical training and competition in football markedly increase the need for macro- and micronutrient intake. This requirement can generally be met by dietary management without the need for dietary supplements. In fact, the efficacy of most supplements available on the market is unproven. In addition, players must be cautious of inadequate product labelling and supplement impurities that may cause a positive drug test. Nonetheless, a number of dietary supplements may beneficially affect football performance. A high endurance capacity is a prerequisite for optimal match performance, particularly if extra time is played. In this context, the potential of low-dose caffeine ingestion (2 - 5 mg . kg body mass(-1)) to enhance endurance performance is well established. However, in the case of football, care must be taken not to overdose because visual information processing might be impaired. Scoring and preventing goals as a rule requires production of high power output. Dietary creatine supplementation (loading dose: 15 - 20 g . day(-1), 4 - 5 days; maintenance dose: 2 - 5 g g . day(-1)) has been found to increase muscle power output, especially during intermittent sprint exercises. Furthermore, creatine intake can augment muscle adaptations to resistance training. Team success and performance also depend on player availability, and thus injury prevention and health maintenance. Glucosamine or chondroitin may be useful in the treatment of joint pain and osteoarthritis, but there is no evidence to support the view that the administration of these supplements will be preventative. Ephedra-containing weight-loss cocktails should certainly be avoided due to reported adverse health effects and positive doping outcomes. Finally, the efficacy of antioxidant or vitamin C intake in excess of the normal recommended dietary dose is equivocal. Responses to dietary supplements can vary substantially between individuals, and therefore the ingestion of any supplement must be assessed

  6. Effects of Model Chemistry and Data Biases on Stratospheric Ozone Assimilation

    National Research Council Canada - National Science Library

    Coy, L; Allen, D. R; Eckermann, S. D; McCormack, J. P; Stajner, I; Hogan, T. F

    2007-01-01

    .... In this study, O-F statistics from the Global Ozone Assimilation Testing System (GOATS) are used to examine how ozone assimilation products and their associated O-F statistics depend on input data biases and ozone photochemistry parameterizations (OPP...

  7. Sensitivity of Satellite Altimetry Data Assimilation on a Weapon Acoustic Preset Using MODAS

    National Research Council Canada - National Science Library

    Chu, Peter; Mancini, Steven; Gottshall, Eric; Cwalina, David; Barron, Charlie N

    2007-01-01

    ...) is analyzed with SSP derived from the modular ocean data assimilation system (MODAS). The MODAS fields differ in that one uses altimeter data assimilated from three satellites while the other uses no altimeter data...

  8. Sucrose assimilation and the role of sucrose transporters in plant ...

    African Journals Online (AJOL)

    STORAGESEVER

    2008-12-29

    Dec 29, 2008 ... African Journal of Biotechnology Vol. 7 (25), pp. ... Review. Sucrose assimilation and the role of sucrose transporters in plant wound response. Omodele ... Key words: Sucrose transporters, Plasma membrane, carbohydrate, sieve element, source-sink. ... pathogens (Paul et al., 2000) and results in a severe.

  9. Economic Assimilation and Outmigration of Immigrants in West-Germany

    NARCIS (Netherlands)

    Bellemare, C.

    2003-01-01

    By analyzing earnings of observed immigrants workers, the literature on the economic assimilation of immigrants has generally overlooked two potentially important selectivity issues.First, earnings of immigrant workers may di¿er substantially from those of non-workers.Second, earnings of immigrants

  10. Opinion Dynamics with Heterogeneous Interactions and Information Assimilation

    Science.gov (United States)

    Mir Tabatabaei, Seydeh Anahita

    2013-01-01

    In any modern society, individuals interact to form opinions on various topics, including economic, political, and social aspects. Opinions evolve as the result of the continuous exchange of information among individuals and of the assimilation of information distributed by media. The impact of individuals' opinions on each other forms a network,…

  11. Anterior Cingulate Cortex in Schema Assimilation and Expression

    Science.gov (United States)

    Wang, Szu-Han; Tse, Dorothy; Morris, Richard G. M.

    2012-01-01

    In humans and in animals, mental schemas can store information within an associative framework that enables rapid and efficient assimilation of new information. Using a hippocampal-dependent paired-associate task, we now report that the anterior cingulate cortex is part of a neocortical network of schema storage with NMDA receptor-mediated…

  12. Naming game with biased assimilation over adaptive networks

    Science.gov (United States)

    Fu, Guiyuan; Zhang, Weidong

    2018-01-01

    The dynamics of two-word naming game incorporating the influence of biased assimilation over adaptive network is investigated in this paper. Firstly an extended naming game with biased assimilation (NGBA) is proposed. The hearer in NGBA accepts the received information in a biased manner, where he may refuse to accept the conveyed word from the speaker with a predefined probability, if the conveyed word is different from his current memory. Secondly, the adaptive network is formulated by rewiring the links. Theoretical analysis is developed to show that the population in NGBA will eventually reach global consensus on either A or B. Numerical simulation results show that the larger strength of biased assimilation on both words, the slower convergence speed, while larger strength of biased assimilation on only one word can slightly accelerate the convergence; larger population size can make the rate of convergence slower to a large extent when it increases from a relatively small size, while such effect becomes minor when the population size is large; the behavior of adaptively reconnecting the existing links can greatly accelerate the rate of convergence especially on the sparse connected network.

  13. Volcanic Ash Data Assimilation System for Atmospheric Transport Model

    Science.gov (United States)

    Ishii, K.; Shimbori, T.; Sato, E.; Tokumoto, T.; Hayashi, Y.; Hashimoto, A.

    2017-12-01

    The Japan Meteorological Agency (JMA) has two operations for volcanic ash forecasts, which are Volcanic Ash Fall Forecast (VAFF) and Volcanic Ash Advisory (VAA). In these operations, the forecasts are calculated by atmospheric transport models including the advection process, the turbulent diffusion process, the gravitational fall process and the deposition process (wet/dry). The initial distribution of volcanic ash in the models is the most important but uncertain factor. In operations, the model of Suzuki (1983) with many empirical assumptions is adopted to the initial distribution. This adversely affects the reconstruction of actual eruption plumes.We are developing a volcanic ash data assimilation system using weather radars and meteorological satellite observation, in order to improve the initial distribution of the atmospheric transport models. Our data assimilation system is based on the three-dimensional variational data assimilation method (3D-Var). Analysis variables are ash concentration and size distribution parameters which are mutually independent. The radar observation is expected to provide three-dimensional parameters such as ash concentration and parameters of ash particle size distribution. On the other hand, the satellite observation is anticipated to provide two-dimensional parameters of ash clouds such as mass loading, top height and particle effective radius. In this study, we estimate the thickness of ash clouds using vertical wind shear of JMA numerical weather prediction, and apply for the volcanic ash data assimilation system.

  14. A reduced adjoint approach to variational data assimilation

    KAUST Repository

    Altaf, Muhammad; El Gharamti, Mohamad; Heemink, Arnold W.; Hoteit, Ibrahim

    2013-01-01

    The adjoint method has been used very often for variational data assimilation. The computational cost to run the adjoint model often exceeds several original model runs and the method needs significant programming efforts to implement the adjoint model code. The work proposed here is variational data assimilation based on proper orthogonal decomposition (POD) which avoids the implementation of the adjoint of the tangent linear approximation of the original nonlinear model. An ensemble of the forward model simulations is used to determine the approximation of the covariance matrix and only the dominant eigenvectors of this matrix are used to define a model subspace. The adjoint of the tangent linear model is replaced by the reduced adjoint based on this reduced space. Thus the adjoint model is run in reduced space with negligible computational cost. Once the gradient is obtained in reduced space it is projected back in full space and the minimization process is carried in full space. In the paper the reduced adjoint approach to variational data assimilation is introduced. The characteristics and performance of the method are illustrated with a number of data assimilation experiments in a ground water subsurface contaminant model. © 2012 Elsevier B.V.

  15. A reduced adjoint approach to variational data assimilation

    KAUST Repository

    Altaf, Muhammad

    2013-02-01

    The adjoint method has been used very often for variational data assimilation. The computational cost to run the adjoint model often exceeds several original model runs and the method needs significant programming efforts to implement the adjoint model code. The work proposed here is variational data assimilation based on proper orthogonal decomposition (POD) which avoids the implementation of the adjoint of the tangent linear approximation of the original nonlinear model. An ensemble of the forward model simulations is used to determine the approximation of the covariance matrix and only the dominant eigenvectors of this matrix are used to define a model subspace. The adjoint of the tangent linear model is replaced by the reduced adjoint based on this reduced space. Thus the adjoint model is run in reduced space with negligible computational cost. Once the gradient is obtained in reduced space it is projected back in full space and the minimization process is carried in full space. In the paper the reduced adjoint approach to variational data assimilation is introduced. The characteristics and performance of the method are illustrated with a number of data assimilation experiments in a ground water subsurface contaminant model. © 2012 Elsevier B.V.

  16. Probability Maps for the Visualization of Assimilation Ensemble Flow Data

    KAUST Repository

    Hollt, Thomas

    2015-05-25

    Ocean forecasts nowadays are created by running ensemble simulations in combination with data assimilation techniques. Most of these techniques resample the ensemble members after each assimilation cycle. This means that in a time series, after resampling, every member can follow up on any of the members before resampling. Tracking behavior over time, such as all possible paths of a particle in an ensemble vector field, becomes very difficult, as the number of combinations rises exponentially with the number of assimilation cycles. In general a single possible path is not of interest but only the probabilities that any point in space might be reached by a particle at some point in time. In this work we present an approach using probability-weighted piecewise particle trajectories to allow such a mapping interactively, instead of tracing quadrillions of individual particles. We achieve interactive rates by binning the domain and splitting up the tracing process into the individual assimilation cycles, so that particles that fall into the same bin after a cycle can be treated as a single particle with a larger probability as input for the next time step. As a result we loose the possibility to track individual particles, but can create probability maps for any desired seed at interactive rates.

  17. Music playlist generation by assimilating GMMs into SOMs

    NARCIS (Netherlands)

    Balkema, Wietse; van der Heijden, Ferdinand

    A method for music playlist generation, using assimilated Gaussian mixture models (GMMs) in self organizing maps (SOMs) is presented. Traditionally, the neurons in a SOM are represented by vectors, but in this paper we propose to use GMMs instead. To this end, we introduce a method to adapt a GMM

  18. Growth, assimilate partitioning and grain yield response of soybean ...

    African Journals Online (AJOL)

    This investigation tested variation in the growth components, assimilate partitioning and grain yield of soybean (Glycine max L. Merrrill) varieties established in CO2 enriched atmosphere when inoculated with mixtures of Arbuscular mycorrhizal fungi (AMF) species in the humid rainforest of Nigeria. A pot and a field ...

  19. Homophily and assimilation among sportactive adolescent substance users

    NARCIS (Netherlands)

    Pearson, M; Steglich, Ch.; Snijders, T.A.B.

    2006-01-01

    We analyse the co-evolution of social networks and substance use behaviour of adolescents and address the problem of separating the effects of homophily and assimilation. Adolescents who prefer friends with the same substance-use behaviour exhibit the homophily principle. Adolescents who adapt their

  20. Modelling Effluent Assimilative Capacity of Ikpoba River, Benin City ...

    African Journals Online (AJOL)

    The sheer display of reprehensible propensity on the part of public hospitals, abattoirs, breweries and city dwellers at large to discharge untreated waste, debris, scum and, in particular, municipal and industrial effluents into Ikpoba River has morphed into a situation whereby the assimilative capacity of the river has reached ...

  1. Satellite Data Assimilation within KIAPS-LETKF system

    Science.gov (United States)

    Jo, Y.; Lee, S., Sr.; Cho, K.

    2016-12-01

    Korea Institute of Atmospheric Prediction Systems (KIAPS) has been developing an ensemble data assimilation system using four-dimensional local ensemble transform kalman filter (LETKF; Hunt et al., 2007) within KIAPS Integrated Model (KIM), referred to as "KIAPS-LETKF". KIAPS-LETKF system was successfully evaluated with various Observing System Simulation Experiments (OSSEs) with NCAR Community Atmospheric Model - Spectral Element (Kang et al., 2013), which has fully unstructured quadrilateral meshes based on the cubed-sphere grid as the same grid system of KIM. Recently, assimilation of real observations has been conducted within the KIAPS-LETKF system with four-dimensional covariance functions over the 6-hr assimilation window. Then, conventional (e.g., sonde, aircraft, and surface) and satellite (e.g., AMSU-A, IASI, GPS-RO, and AMV) observations have been provided by the KIAPS Package for Observation Processing (KPOP). Wind speed prediction was found most beneficial due to ingestion of AMV and for the temperature prediction the improvement in assimilation is mostly due to ingestion of AMSU-A and IASI. However, some degradation in the simulation of the GPS-RO is presented in the upper stratosphere, even though GPS-RO leads positive impacts on the analysis and forecasts. We plan to test the bias correction method and several vertical localization strategies for radiance observations to improve analysis and forecast impacts.

  2. Assimilation of Long-Range Lightning Data over the Pacific

    Science.gov (United States)

    2011-09-30

    convective rainfall analyses over the Pacific, and (iii) to improve marine prediction of cyclogenesis of both tropical and extratropical cyclones through...data over the North Pacific Ocean, refine the relationships between lightning and storm hydrometeor characteristics, and assimilate lightning...unresolved storm -scale areas of deep convection over the data-sparse open oceans. Diabatic heating sources, especially latent heat release in deep

  3. Abscisic acid and assimilate partitioning during seed development

    NARCIS (Netherlands)

    Bruijn, de S.M.

    1993-01-01

    This thesis describes the influence of abscisic acid (ABA) on the transport of assimilates to seeds and the deposition of reserves in seeds. It is well-known from literature that ABA accumulates in seeds during development, and that ABA concentrations in seeds correlate rather well with

  4. A Generic Software Framework for Data Assimilation and Model Calibration

    NARCIS (Netherlands)

    Van Velzen, N.

    2010-01-01

    The accuracy of dynamic simulation models can be increased by using observations in conjunction with a data assimilation or model calibration algorithm. However, implementing such algorithms usually increases the complexity of the model software significantly. By using concepts from object oriented

  5. Educational Attainments of Immigrant Offspring: Success or Segmented Assimilation?

    Science.gov (United States)

    Boyd, Monica

    2002-01-01

    Examined the educational attainments of adult offspring of immigrants age 20-64 years, analyzing data from Canada's 1996 Survey of Labour and Income Dynamics. Contrary to second generation decline and segmented underclass assimilation found in the United States, Canadian adult visible-minority immigrant offspring did not have lower educational…

  6. Global assimilation of X Project Loon stratospheric balloon observations

    Science.gov (United States)

    Coy, L.; Schoeberl, M. R.; Pawson, S.; Candido, S.; Carver, R. W.

    2017-12-01

    Project Loon has an overall goal of providing worldwide internet coverage using a network of long-duration super-pressure balloons. Beginning in 2013, Loon has launched over 1600 balloons from multiple tropical and middle latitude locations. These GPS tracked balloon trajectories provide lower stratospheric wind information over the oceans and remote land areas where traditional radiosonde soundings are sparse, thus providing unique coverage of lower stratospheric winds. To fully investigate these Loon winds we: 1) compare the Loon winds to winds produced by a global data assimilation system (DAS: NASA GEOS) and 2) assimilate the Loon winds into the same comprehensive DAS. Results show that in middle latitudes the Loon winds and DAS winds agree well and assimilating the Loon winds have only a small impact on short-term forecasting of the Loon winds, however, in the tropics the loon winds and DAS winds often disagree substantially (8 m/s or more in magnitude) and in these cases assimilating the loon winds significantly improves the forecast of the loon winds. By highlighting cases where the Loon and DAS winds differ, these results can lead to improved understanding of stratospheric winds, especially in the tropics.

  7. Interactions of waterborne and dietary cadmium on the expression of calcium transporters in the gills of rainbow trout: Influence of dietary calcium supplementation

    International Nuclear Information System (INIS)

    Galvez, Fernando; Franklin, Natasha M.; Tuttle, Ryan B.; Wood, Chris M.

    2007-01-01

    Recent studies have shown that dietary Ca 2+ supplementation strongly inhibits uptake of Ca 2+ and Cd at the fish gill. To better understand the influence of dietary Ca 2+ on branchial Ca 2+ transport, we examined the expression of two trout gill calcium transporters during waterborne and dietary Cd exposure, at two different levels of dietary Ca 2+ . Quantitative polymerase chain reaction (PCR) was used to monitor epithelial calcium channel (ECaC) and sodium-calcium exchange (NCX) mRNA levels following 7-28 days of exposure to these treatments. In brief, juvenile rainbow trout (Oncorhynchus mykiss) were exposed to control, 3 μg/L waterborne Cd, 500 mg/kg dietary Cd, or a combined 3 μg/L waterborne plus 500 mg/kg dietary Cd exposure, supplemented with either 20 mg/g or 60 mg/g dietary calcium (Ca 2+ ). Two-way analysis of variance was used to discern the main effects of Cd exposure and dietary Ca 2+ supplementation on ECaC and NCX mRNA levels. We found that dietary Ca 2+ supplementation decreased significantly ECaC mRNA expression on days 14 and 21. In comparison, NCX mRNA levels were not influenced by dietary Ca 2+ supplementation, but rather were significantly inhibited in the combined waterborne and dietary Cd exposure on day 7 alone. Statistical analysis found no interactive effects between Cd exposure and dietary Ca 2+ exposure at any time point, except for day 28.This study provides evidence of the importance of nutritional status on the transcriptional regulation of ion transport at the fish gill. We discuss the importance of diet and nutritional status to the development of new regulatory approaches, such as the biotic ligand model, which currently do not account for the significance of diet on metal bioavailability in aquatic organisms

  8. Lidar data assimilation for improved analyses of volcanic aerosol events

    Science.gov (United States)

    Lange, Anne Caroline; Elbern, Hendrik

    2014-05-01

    Observations of hazardous events with release of aerosols are hardly analyzable by today's data assimilation algorithms, without producing an attenuating bias. Skillful forecasts of unexpected aerosol events are essential for human health and to prevent an exposure of infirm persons and aircraft with possibly catastrophic outcome. Typical cases include mineral dust outbreaks, mostly from large desert regions, wild fires, and sea salt uplifts, while the focus aims for volcanic eruptions. In general, numerical chemistry and aerosol transport models cannot simulate such events without manual adjustments. The concept of data assimilation is able to correct the analysis, as long it is operationally implemented in the model system. Though, the tangent-linear approximation, which describes a substantial precondition for today's cutting edge data assimilation algorithms, is not valid during unexpected aerosol events. As part of the European COPERNICUS (earth observation) project MACC II and the national ESKP (Earth System Knowledge Platform) initiative, we developed a module that enables the assimilation of aerosol lidar observations, even during unforeseeable incidences of extreme emissions of particulate matter. Thereby, the influence of the background information has to be reduced adequately. Advanced lidar instruments comprise on the one hand the aspect of radiative transfer within the atmosphere and on the other hand they can deliver a detailed quantification of the detected aerosols. For the assimilation of maximal exploited lidar data, an appropriate lidar observation operator is constructed, compatible with the EURAD-IM (European Air Pollution and Dispersion - Inverse Model) system. The observation operator is able to map the modeled chemical and physical state on lidar attenuated backscatter, transmission, aerosol optical depth, as well as on the extinction and backscatter coefficients. Further, it has the ability to process the observed discrepancies with lidar

  9. Data Assimilation to Extract Soil Moisture Information from SMAP Observations

    Directory of Open Access Journals (Sweden)

    Jana Kolassa

    2017-11-01

    Full Text Available This study compares different methods to extract soil moisture information through the assimilation of Soil Moisture Active Passive (SMAP observations. Neural network (NN and physically-based SMAP soil moisture retrievals were assimilated into the National Aeronautics and Space Administration (NASA Catchment model over the contiguous United States for April 2015 to March 2017. By construction, the NN retrievals are consistent with the global climatology of the Catchment model soil moisture. Assimilating the NN retrievals without further bias correction improved the surface and root zone correlations against in situ measurements from 14 SMAP core validation sites (CVS by 0.12 and 0.16, respectively, over the model-only skill, and reduced the surface and root zone unbiased root-mean-square error (ubRMSE by 0.005 m 3 m − 3 and 0.001 m 3 m − 3 , respectively. The assimilation reduced the average absolute surface bias against the CVS measurements by 0.009 m 3 m − 3 , but increased the root zone bias by 0.014 m 3 m − 3 . Assimilating the NN retrievals after a localized bias correction yielded slightly lower surface correlation and ubRMSE improvements, but generally the skill differences were small. The assimilation of the physically-based SMAP Level-2 passive soil moisture retrievals using a global bias correction yielded similar skill improvements, as did the direct assimilation of locally bias-corrected SMAP brightness temperatures within the SMAP Level-4 soil moisture algorithm. The results show that global bias correction methods may be able to extract more independent information from SMAP observations compared to local bias correction methods, but without accurate quality control and observation error characterization they are also more vulnerable to adverse effects from retrieval errors related to uncertainties in the retrieval inputs and algorithm. Furthermore, the results show that using global bias correction approaches without a

  10. Improving Forecast Skill by Assimilation of AIRS Temperature Soundings

    Science.gov (United States)

    Susskind, Joel; Reale, Oreste

    2010-01-01

    AIRS was launched on EOS Aqua on May 4, 2002, together with AMSU-A and HSB, to form a next generation polar orbiting infrared and microwave atmospheric sounding system. The primary products of AIRS/AMSU-A are twice daily global fields of atmospheric temperature-humidity profiles, ozone profiles, sea/land surface skin temperature, and cloud related parameters including OLR. The AIRS Version 5 retrieval algorithm, is now being used operationally at the Goddard DISC in the routine generation of geophysical parameters derived from AIRS/AMSU data. A major innovation in Version 5 is the ability to generate case-by-case level-by-level error estimates delta T(p) for retrieved quantities and the use of these error estimates for Quality Control. We conducted a number of data assimilation experiments using the NASA GEOS-5 Data Assimilation System as a step toward finding an optimum balance of spatial coverage and sounding accuracy with regard to improving forecast skill. The model was run at a horizontal resolution of 0.5 deg. latitude X 0.67 deg longitude with 72 vertical levels. These experiments were run during four different seasons, each using a different year. The AIRS temperature profiles were presented to the GEOS-5 analysis as rawinsonde profiles, and the profile error estimates delta (p) were used as the uncertainty for each measurement in the data assimilation process. We compared forecasts analyses generated from the analyses done by assimilation of AIRS temperature profiles with three different sets of thresholds; Standard, Medium, and Tight. Assimilation of Quality Controlled AIRS temperature profiles significantly improve 5-7 day forecast skill compared to that obtained without the benefit of AIRS data in all of the cases studied. In addition, assimilation of Quality Controlled AIRS temperature soundings performs better than assimilation of AIRS observed radiances. Based on the experiments shown, Tight Quality Control of AIRS temperature profile performs best

  11. Snow multivariable data assimilation for hydrological predictions in mountain areas

    Science.gov (United States)

    Piazzi, Gaia; Campo, Lorenzo; Gabellani, Simone; Rudari, Roberto; Castelli, Fabio; Cremonese, Edoardo; Morra di Cella, Umberto; Stevenin, Hervé; Ratto, Sara Maria

    2016-04-01

    The seasonal presence of snow on alpine catchments strongly impacts both surface energy balance and water resource. Thus, the knowledge of the snowpack dynamics is of critical importance for several applications, such as water resource management, floods prediction and hydroelectric power production. Several independent data sources provide information about snowpack state: ground-based measurements, satellite data and physical models. Although all these data types are reliable, each of them is affected by specific flaws and errors (respectively dependency on local conditions, sensor biases and limitations, initialization and poor quality forcing data). Moreover, there are physical factors that make an exhaustive reconstruction of snow dynamics complicated: snow intermittence in space and time, stratification and slow phenomena like metamorphism processes, uncertainty in snowfall evaluation, wind transportation, etc. Data Assimilation (DA) techniques provide an objective methodology to combine observational and modeled information to obtain the most likely estimate of snowpack state. Indeed, by combining all the available sources of information, the implementation of DA schemes can quantify and reduce the uncertainties of the estimations. This study presents SMASH (Snow Multidata Assimilation System for Hydrology), a multi-layer snow dynamic model, strengthened by a robust multivariable data assimilation algorithm. The model is physically based on mass and energy balances and can be used to reproduce the main physical processes occurring within the snowpack: accumulation, density dynamics, melting, sublimation, radiative balance, heat and mass exchanges. The model is driven by observed forcing meteorological data (air temperature, wind velocity, relative air humidity, precipitation and incident solar radiation) to provide a complete estimate of snowpack state. The implementation of an Ensemble Kalman Filter (EnKF) scheme enables to assimilate simultaneously ground

  12. Technetium uptake by Sinapis Alba

    International Nuclear Information System (INIS)

    Mueller, H.; Ter Meer-Bekk, Ch.

    1986-01-01

    Transfer factors for pertechnetate uptake was determined for Sinapis Alba cultured hydroponically. For the freshly harvested, undried plants transfer factors were found between 13 and 40 depending on the growth period. (author)

  13. Dietary ecology of human

    International Nuclear Information System (INIS)

    Minagawa, Masao

    1990-01-01

    The dietary life of humans varies with the environment where they live and has been changing with time. It has become possible to examine such changes by using stable carbon and nitrogen isotope composition as a chemical tool. The present report outlines recent developments in the application of this tool and compares the dietary ecologies of various human groups from the viewpoint of isotope geochemistry. The history of the application of this tool to dietary analysis is summarized first, and features of the carbon and nitrogen isotope composition in animals and their relations with the food chain are outlined. The dietary ecology of the current people is then discussed in relation to the isotope composition in food, the isotope composition in hair of the current people, and determination of food habit of specific groups of people from such isotope compositions. For prediction of dietary composition, the report presents a flow chart for an algorism which is based on the Monte Carlo method. It also outlines processes for analyzing food habits of people in the prehistoric age, focusing on distribution of isotope composition in humans over the world. (N.K.)

  14. Assimilation of SMOS Retrievals in the Land Information System

    Science.gov (United States)

    Blankenship, Clay B.; Case, Jonathan L.; Zavodsky, Bradley T.; Crosson, William L.

    2016-01-01

    The Soil Moisture and Ocean Salinity (SMOS) satellite provides retrievals of soil moisture in the upper 5 cm with a 30-50 km resolution and a mission accuracy requirement of 0.04 cm(sub 3 cm(sub -3). These observations can be used to improve land surface model soil moisture states through data assimilation. In this paper, SMOS soil moisture retrievals are assimilated into the Noah land surface model via an Ensemble Kalman Filter within the NASA Land Information System. Bias correction is implemented using Cumulative Distribution Function (CDF) matching, with points aggregated by either land cover or soil type to reduce sampling error in generating the CDFs. An experiment was run for the warm season of 2011 to test SMOS data assimilation and to compare assimilation methods. Verification of soil moisture analyses in the 0-10 cm upper layer and root zone (0-1 m) was conducted using in situ measurements from several observing networks in the central and southeastern United States. This experiment showed that SMOS data assimilation significantly increased the anomaly correlation of Noah soil moisture with station measurements from 0.45 to 0.57 in the 0-10 cm layer. Time series at specific stations demonstrate the ability of SMOS DA to increase the dynamic range of soil moisture in a manner consistent with station measurements. Among the bias correction methods, the correction based on soil type performed best at bias reduction but also reduced correlations. The vegetation-based correction did not produce any significant differences compared to using a simple uniform correction curve.

  15. A virtual reality catchment for data assimilation experiments

    Science.gov (United States)

    Schalge, Bernd; Rihani, Jehan; Haese, Barbara; Baroni, Gabriele; Erdal, Daniel; Neuweiler, Insa; Hendricks-Franssen, Harrie-Jan; Geppert, Gernot; Ament, Felix; Kollet, Stefan; Cirpka, Olaf; Saavedra, Pablo; Han, Xujun; Attinger, Sabine; Kunstmann, Harald; Vereecken, Harry; Simmer, Clemens

    2016-04-01

    Current data assimilation (DA) systems often lack the possibility to assimilate measurements across compartments to accurately estimate states and fluxes in subsurface-land surface-atmosphere systems (SLAS). In order to develop a new DA framework that is able to realize this cross-compartmental assimilation a comprehensive testing environment is needed. Therefore a virtual reality (VR) catchment is constructed with the Terrestrial System Modeling Platform (TerrSysMP). This catchment mimics the Neckar catchment in Germany. TerrSysMP employs the atmospheric model COSMO, the land surface model CLM and the hydrological model ParFlow coupled with the external coupler OASIS. We will show statistical tests to prove the plausibility of the VR. The VR is running in a fully-coupled mode (subsurface - land surface - atmosphere) which includes the interactions of subsurface dynamics with the atmosphere, such as the effects of soil moisture, which can influence near-surface temperatures, convection patterns or the surface heat fluxes. A reference high resolution run serves as the "truth" from which virtual observations are extracted with observation operators like virtual rain gauges, synoptic stations and satellite observations (amongst others). This effectively solves the otherwise often encountered data scarcity issues with respect to DA. Furthermore an ensemble of model runs at a reduced resolution is performed. This ensemble serves also for open loop runs to be compared with data assimilation experiments. The model runs with this ensemble served to identify sets of parameters that are especially sensitive to changes and have the largest impact on the system. These parameters were the focus of subsequent ensemble simulations and DA experiments. We will show to what extend the VR states can be re-constructed using data assimilation methods with only a limited number of virtual observations available.

  16. Development of KIAPS Observation Processing Package for Data Assimilation System

    Science.gov (United States)

    Kang, Jeon-Ho; Chun, Hyoung-Wook; Lee, Sihye; Han, Hyun-Jun; Ha, Su-Jin

    2015-04-01

    The Korea Institute of Atmospheric Prediction Systems (KIAPS) was founded in 2011 by the Korea Meteorological Administration (KMA) to develop Korea's own global Numerical Weather Prediction (NWP) system as nine year (2011-2019) project. Data assimilation team at KIAPS has been developing the observation processing system (KIAPS Package for Observation Processing: KPOP) to provide optimal observations to the data assimilation system for the KIAPS Global Model (KIAPS Integrated Model - Spectral Element method based on HOMME: KIM-SH). Currently, the KPOP is capable of processing the satellite radiance data (AMSU-A, IASI), GPS Radio Occultation (GPS-RO), AIRCRAFT (AMDAR, AIREP, and etc…), and synoptic observation (SONDE and SURFACE). KPOP adopted Radiative Transfer for TOVS version 10 (RTTOV_v10) to get brightness temperature (TB) for each channel at top of the atmosphere (TOA), and Radio Occultation Processing Package (ROPP) 1-dimensional forward module to get bending angle (BA) at each tangent point. The observation data are obtained from the KMA which has been composited with BUFR format to be converted with ODB that are used for operational data assimilation and monitoring at the KMA. The Unified Model (UM), Community Atmosphere - Spectral Element (CAM-SE) and KIM-SH model outputs are used for the bias correction (BC) and quality control (QC) of the observations, respectively. KPOP provides radiance and RO data for Local Ensemble Transform Kalman Filter (LETKF) and also provides SONDE, SURFACE and AIRCRAFT data for Three-Dimensional Variational Assimilation (3DVAR). We are expecting all of the observation type which processed in KPOP could be combined with both of the data assimilation method as soon as possible. The preliminary results from each observation type will be introduced with the current development status of the KPOP.

  17. ASSIMILATION OF COARSE-SCALEDATAUSINGTHE ENSEMBLE KALMAN FILTER

    KAUST Repository

    Efendiev, Yalchin

    2011-01-01

    Reservoir data is usually scale dependent and exhibits multiscale features. In this paper we use the ensemble Kalman filter (EnKF) to integrate data at different spatial scales for estimating reservoir fine-scale characteristics. Relationships between the various scales is modeled via upscaling techniques. We propose two versions of the EnKF to assimilate the multiscale data, (i) where all the data are assimilated together and (ii) the data are assimilated sequentially in batches. Ensemble members obtained after assimilating one set of data are used as a prior to assimilate the next set of data. Both of these versions are easily implementable with any other upscaling which links the fine to the coarse scales. The numerical results with different methods are presented in a twin experiment setup using a two-dimensional, two-phase (oil and water) flow model. Results are shown with coarse-scale permeability and coarse-scale saturation data. They indicate that additional data provides better fine-scale estimates and fractional flow predictions. We observed that the two versions of the EnKF differed in their estimates when coarse-scale permeability is provided, whereas their results are similar when coarse-scale saturation is used. This behavior is thought to be due to the nonlinearity of the upscaling operator in the case of the former data. We also tested our procedures with various precisions of the coarse-scale data to account for the inexact relationship between the fine and coarse scale data. As expected, the results show that higher precision in the coarse-scale data yielded improved estimates. With better coarse-scale modeling and inversion techniques as more data at multiple coarse scales is made available, the proposed modification to the EnKF could be relevant in future studies.

  18. Diselenolane-mediated cellular uptake.

    Science.gov (United States)

    Chuard, Nicolas; Poblador-Bahamonde, Amalia I; Zong, Lili; Bartolami, Eline; Hildebrandt, Jana; Weigand, Wolfgang; Sakai, Naomi; Matile, Stefan

    2018-02-21

    The emerging power of thiol-mediated uptake with strained disulfides called for a move from sulfur to selenium. We report that according to results with fluorescent model substrates, cellular uptake with 1,2-diselenolanes exceeds uptake with 1,2-dithiolanes and epidithiodiketopiperazines with regard to efficiency as well as intracellular localization. The diselenide analog of lipoic acid performs best. This 1,2-diselenolane delivers fluorophores efficiently to the cytosol of HeLa Kyoto cells, without detectable endosomal capture as with 1,2-dithiolanes or dominant escape into the nucleus as with epidithiodiketopiperazines. Diselenolane-mediated cytosolic delivery is non-toxic (MTT assay), sensitive to temperature but insensitive to inhibitors of endocytosis (chlorpromazine, methyl-β-cyclodextrin, wortmannin, cytochalasin B) and conventional thiol-mediated uptake (Ellman's reagent), and to serum. Selenophilicity, the extreme CSeSeC dihedral angle of 0° and the high but different acidity of primary and secondary selenols might all contribute to uptake. Thiol-exchange affinity chromatography is introduced as operational mimic of thiol-mediated uptake that provides, in combination with rate enhancement of DTT oxidation, direct experimental evidence for existence and nature of the involved selenosulfides.

  19. A problem-solving environment for data assimilation in air quality modelling

    NARCIS (Netherlands)

    Velzen, N. van; Segers, A.J.

    2010-01-01

    A generic toolbox for data assimilation called COSTA (COmmon Set of Tools for the Assimilation of data) makes it possible to simplify the application of data assimilation to models and to try out various methods for a particular model. Concepts of object oriented programming are used to define

  20. Dietary antioxidants and exercise.

    Science.gov (United States)

    Powers, Scott K; DeRuisseau, Keith C; Quindry, John; Hamilton, Karyn L

    2004-01-01

    Muscular exercise promotes the production of radicals and other reactive oxygen species in the working muscle. Growing evidence indicates that reactive oxygen species are responsible for exercise-induced protein oxidation and contribute to muscle fatigue. To protect against exercise-induced oxidative injury, muscle cells contain complex endogenous cellular defence mechanisms (enzymatic and non-enzymatic antioxidants) to eliminate reactive oxygen species. Furthermore, exogenous dietary antioxidants interact with endogenous antioxidants to form a cooperative network of cellular antioxidants. Knowledge that exercise-induced oxidant formation can contribute to muscle fatigue has resulted in numerous investigations examining the effects of antioxidant supplementation on human exercise performance. To date, there is limited evidence that dietary supplementation with antioxidants will improve human performance. Furthermore, it is currently unclear whether regular vigorous exercise increases the need for dietary intake of antioxidants. Clearly, additional research that analyses the antioxidant requirements of individual athletes is needed.

  1. Dietary Patterns in Childhood

    DEFF Research Database (Denmark)

    Andersen, Louise Beltoft Borup

    A healthy diet is essential for healthy growth and development during childhood and may prevent obesity, diabetes, and cardiovascular diseases throughout life. Traditionally, diet has been investigated as single nutrients. However, people do not eat one single nutrient and they do not even eat one...... single food. People consume meals and these meals vary during a day, over a year and during a life time. To comprehend some of this complexity it could be advantageous to investigate dietary patterns representing the whole diet as patterns might be better markers of growth and health than single...... childhood. These associations might contribute to the identification of families, who would benefit from guidance to help them establish healthy dietary patterns for their infants. Finding tracking for some infants and changes in adherence to dietary patterns for others as well as the association between...

  2. Dietary hyperthyroidism in dogs.

    Science.gov (United States)

    Köhler, B; Stengel, C; Neiger, R

    2012-03-01

    Evaluation of dogs with elevated plasma thyroxine concentration fed raw food before and after changing the diet. Between 2006 and 2011 all dogs presented with an elevated plasma thyroxine concentration and a dietary history of feeding raw food were included. Thyroxine (reference interval: 19·3 to 51·5 nmol/L) and in many cases also thyroid-stimulating hormone concentrations (reference interval: weight loss, aggressiveness, tachycardia, panting and restlessness while six dogs had no clinical signs. After changing the diet eight dogs were examined: thyroxine concentration normalised in all dogs and clinical signs resolved. Dietary hyperthyroidism can be seen in dogs on a raw meat diet or fed fresh or dried gullets. Increased plasma thyroxine concentration in a dog, either with or without signs of hyperthyroidism, should prompt the veterinarian to obtain a thorough dietary history. © 2012 British Small Animal Veterinary Association.

  3. Nitrate removal in stream ecosystems measured by 15N addition experiments: Total uptake

    Science.gov (United States)

    Hall, R.O.; Tank, J.L.; Sobota, D.J.; Mulholland, P.J.; O'Brien, J. M.; Dodds, W.K.; Webster, J.R.; Valett, H.M.; Poole, G.C.; Peterson, B.J.; Meyer, J.L.; McDowell, W.H.; Johnson, S.L.; Hamilton, S.K.; Grimm, N. B.; Gregory, S.V.; Dahm, Clifford N.; Cooper, L.W.; Ashkenas, L.R.; Thomas, S.M.; Sheibley, R.W.; Potter, J.D.; Niederlehner, B.R.; Johnson, L.T.; Helton, A.M.; Crenshaw, C.M.; Burgin, A.J.; Bernot, M.J.; Beaulieu, J.J.; Arangob, C.P.

    2009-01-01

    We measured uptake length of 15NO-3 in 72 streams in eight regions across the United States and Puerto Rico to develop quantitative predictive models on controls of NO-3 uptake length. As part of the Lotic Intersite Nitrogen eXperiment II project, we chose nine streams in each region corresponding to natural (reference), suburban-urban, and agricultural land uses. Study streams spanned a range of human land use to maximize variation in NO-3 concentration, geomorphology, and metabolism. We tested a causal model predicting controls on NO-3 uptake length using structural equation modeling. The model included concomitant measurements of ecosystem metabolism, hydraulic parameters, and nitrogen concentration. We compared this structural equation model to multiple regression models which included additional biotic, catchment, and riparian variables. The structural equation model explained 79% of the variation in log uptake length (S Wtot). Uptake length increased with specific discharge (Q/w) and increasing NO-3 concentrations, showing a loss in removal efficiency in streams with high NO-3 concentration. Uptake lengths shortened with increasing gross primary production, suggesting autotrophic assimilation dominated NO-3 removal. The fraction of catchment area as agriculture and suburban-urban land use weakly predicted NO-3 uptake in bivariate regression, and did improve prediction in a set of multiple regression models. Adding land use to the structural equation model showed that land use indirectly affected NO-3 uptake lengths via directly increasing both gross primary production and NO-3 concentration. Gross primary production shortened SWtot, while increasing NO-3 lengthened SWtot resulting in no net effect of land use on NO- 3 removal. ?? 2009.

  4. Application of Observed Precipitation in NCEP Global and Regional Data Assimilation Systems, Including Reanalysis and Land Data Assimilation

    Science.gov (United States)

    Mitchell, K. E.

    2006-12-01

    The Environmental Modeling Center (EMC) of the National Centers for Environmental Prediction (NCEP) applies several different analyses of observed precipitation in both the data assimilation and validation components of NCEP's global and regional numerical weather and climate prediction/analysis systems (including in NCEP global and regional reanalysis). This invited talk will survey these data assimilation and validation applications and methodologies, as well as the temporal frequency, spatial domains, spatial resolution, data sources, data density and data quality control in the precipitation analyses that are applied. Some of the precipitation analyses applied by EMC are produced by NCEP's Climate Prediction Center (CPC), while others are produced by the River Forecast Centers (RFCs) of the National Weather Service (NWS), or by automated algorithms of the NWS WSR-88D Radar Product Generator (RPG). Depending on the specific type of application in data assimilation or model forecast validation, the temporal resolution of the precipitation analyses may be hourly, daily, or pentad (5-day) and the domain may be global, continental U.S. (CONUS), or Mexico. The data sources for precipitation include ground-based gauge observations, radar-based estimates, and satellite-based estimates. The precipitation analyses over the CONUS are analyses of either hourly, daily or monthly totals of precipitation, and they are of two distinct types: gauge-only or primarily radar-estimated. The gauge-only CONUS analysis of daily precipitation utilizes an orographic-adjustment technique (based on the well-known PRISM precipitation climatology of Oregon State University) developed by the NWS Office of Hydrologic Development (OHD). The primary NCEP global precipitation analysis is the pentad CPC Merged Analysis of Precipitation (CMAP), which blends both gauge observations and satellite estimates. The presentation will include a brief comparison between the CMAP analysis and other global

  5. Ectomycorrhizal fungi enhance nitrogen and phosphorus nutrition of Nothofagus dombeyi under drought conditions by regulating assimilative enzyme activities.

    Science.gov (United States)

    Alvarez, Maricel; Huygens, Dries; Olivares, Erick; Saavedra, Isabel; Alberdi, Miren; Valenzuela, Eduardo

    2009-08-01

    Drought stress conditions (DC) reduce plant growth and nutrition, restraining the sustainable reestablishment of Nothofagus dombeyi in temperate south Chilean forest ecosystems. Ectomycorrhizal symbioses have been documented to enhance plant nitrogen (N) and phosphorus (P) uptake under drought, but the regulation of involved assimilative enzymes remains unclear. We studied 1-year-old N. dombeyi (Mirb.) Oerst. plants in association with the ectomycorrhizal fungi Pisolithus tinctorius (Pers.) Coker & Couch. and Descolea antartica Sing. In greenhouse experiments, shoot and root dry weights, mycorrhizal colonization, foliar N and P concentrations, and root enzyme activities [glutamate synthase (glutamine oxoglutarate aminotransferase (GOGAT), EC 1.4.1.13-14), glutamine synthetase (GS, EC 6.3.1.2), glutamate dehydrogenase (GDH, EC 1.4.1.2-4), nitrate reductase (NR, EC 1.6.6.1), and acid phosphomonoesterase (PME, EC 3.1.3.1-2)] were determined as a function of soil-water content. Inoculation of N. dombeyi with P. tinctorius and D. antartica significantly stimulated plant growth and increased plant foliar N and P concentrations, especially under DC. Ectomycorrhizal inoculation increased the activity of all studied enzymes relative to non-mycorrhizal plants under drought. We speculate that GDH is a key enzyme involved in the enhancement of ectomycorrhizal carbon (C) availability by fuelling the tricarboxylic acid (TCA) cycle under conditions of drought-induced carbon deficit. All studied assimilative enzymes of the ectomycorrhizal associations, involved in C, N, and P transfers, are closely interlinked and interdependent. The up-regulation of assimilative enzyme activities by ectomycorrhizal fungal root colonizers acts as a functional mechanism to increase seedling endurance to drought. We insist upon incorporating ectomycorrhizal inoculation in existing Chilean afforestation programs.

  6. Dietary Reference Values for choline

    DEFF Research Database (Denmark)

    Sjödin, Anders Mikael

    2016-01-01

    Following a request from the European Commission, the EFSA Panel on Dietetic Products, Nutrition and Allergies (NDA) derives Dietary Reference Values (DRVs) for choline. In this Opinion, the Panel considers dietary choline including choline compounds (e.g. glycerophosphocholine, phosphocholine...

  7. Investigate the plant biomass response to climate warming in permafrost ecosystem using matrix-based data assimilation

    Science.gov (United States)

    Lu, X.; Du, Z.; Schuur, E.; Luo, Y.

    2017-12-01

    Permafrost is one of the most vulnerable regions on the earth with over 40% world soil C represented in this region. Future climate warming potentially has a great impact on this region. On one hand, rising temperature accelerates permafrost soil thaw and release more C from land. On the other hand, warming may also increase the plant growing season length and therefore negatively feedback to climate change by increasing annual land C uptake. However, whether permafrost vegetation biomass change in response to warming can sequester more C has not been well understood. Manipulated air warming experiments reported that air warming has very limited impacts on grass land productivity and biomass growth in permafrost region [Mauritz et al., 2017]. It is hard to reveal the mechanisms behind the limited air warming response directly from experiment data. We employ a vegetation C cycle matrix model based on Community land model 4.5 (CLM4.5) and data assimilation technique to investigate how much do phenology and physiology processes contribute to the response respectively. Our results indicate phenology contributes the most in response to warming. The shift of vegetation parameter distributions after 2012 indicate vegetation acclimation may explain the modest response in plant biomass to air warming. The results suggest future model development need to take vegetation acclimation more seriously. The novel matrix-based model allows data assimilation to be conducted more efficiently. It provides more functional understanding of the models as well as the mechanism behind experiment data.

  8. Dietary patterns and colorectal cancer

    OpenAIRE

    Tayyem, Reema F.; Bawadi, Hiba A.; Shehadah, Ihab; Agraib, Lana M.; AbuMweis, Suhad S.; Al-Jaberi, Tareq; Al-Nusairr, Majed; Bani-Hani, Kamal E.; Heath, Dennis D.

    2016-01-01

    Summary Background & aimsDietary pattern and lifestyle have been reported to be important risk factors in the development of colorectal cancer (CRC). However, the mechanism of action of dietary factors in CRC disease is unclear. The aim of this study is the examination of several dietary choices and their potential association with the risk of developing CRC. MethodsDietary data was collected from 220 subjects who were previously diagnosed with CRC, and 281 control subjects (matched by age, g...

  9. The uptake of tocopherols by RAW 264.7 macrophages

    Directory of Open Access Journals (Sweden)

    Papas Andreas M

    2002-10-01

    Full Text Available Abstract Background Alpha-Tocopherol and gamma-tocopherol are the two major forms of vitamin E in human plasma and the primary lipid soluble antioxidants. The dietary intake of gamma-tocopherol is generally higher than that of alpha-tocopherol. However, alpha-tocopherol plasma levels are about four fold higher than those of gamma-tocopherol. Among other factors, a preferential cellular uptake of gamma-tocopherol over alpha-tocopherol could contribute to the observed higher plasma alpha-tocopherol levels. In this investigation, we studied the uptake and depletion of both alpha-tocopherol and gamma-tocopherol (separately and together in cultured RAW 264.7 macrophages. Similar studies were performed with alpha-tocopheryl quinone and gamma-tocopheryl quinone, which are oxidation products of tocopherols. Results RAW 264.7 macrophages showed a greater uptake of gamma-tocopherol compared to alpha-tocopherol (with uptake being defined as the net difference between tocopherol transported into the cells and loss due to catabolism and/or in vitro oxidation. Surprisingly, we also found that the presence of gamma-tocopherol promoted the cellular uptake of alpha-tocopherol. Mass balance considerations suggest that products other than quinone were formed during the incubation of tocopherols with macrophages. Conclusion Our data suggests that gamma-tocopherol could play a significant role in modulating intracellular antioxidant defence mechanisms. Moreover, we found the presence of gamma-tocopherol dramatically influenced the cellular accumulation of alpha-tocopherol, i.e., gamma-tocopherol promoted the accumulation of alpha-tocopherol. If these results could be extrapolated to in vivo conditions they suggest that gamma-tocopherol is selectively taken up by cells and removed from plasma more rapidly than alpha-tocopherol. This could, in part, contribute to the selective maintenance of alpha-tocopherol in plasma compared to gamma-tocopherol.

  10. Open source data assimilation framework for hydrological modeling

    Science.gov (United States)

    Ridler, Marc; Hummel, Stef; van Velzen, Nils; Katrine Falk, Anne; Madsen, Henrik

    2013-04-01

    An open-source data assimilation framework is proposed for hydrological modeling. Data assimilation (DA) in hydrodynamic and hydrological forecasting systems has great potential to improve predictions and improve model result. The basic principle is to incorporate measurement information into a model with the aim to improve model results by error minimization. Great strides have been made to assimilate traditional in-situ measurements such as discharge, soil moisture, hydraulic head and snowpack into hydrologic models. More recently, remotely sensed data retrievals of soil moisture, snow water equivalent or snow cover area, surface water elevation, terrestrial water storage and land surface temperature have been successfully assimilated in hydrological models. The assimilation algorithms have become increasingly sophisticated to manage measurement and model bias, non-linear systems, data sparsity (time & space) and undetermined system uncertainty. It is therefore useful to use a pre-existing DA toolbox such as OpenDA. OpenDA is an open interface standard for (and free implementation of) a set of tools to quickly implement DA and calibration for arbitrary numerical models. The basic design philosophy of OpenDA is to breakdown DA into a set of building blocks programmed in object oriented languages. To implement DA, a model must interact with OpenDA to create model instances, propagate the model, get/set variables (or parameters) and free the model once DA is completed. An open-source interface for hydrological models exists capable of all these tasks: OpenMI. OpenMI is an open source standard interface already adopted by key hydrological model providers. It defines a universal approach to interact with hydrological models during simulation to exchange data during runtime, thus facilitating the interactions between models and data sources. The interface is flexible enough so that models can interact even if the model is coded in a different language, represent

  11. Mechanisms of digestion and absorption of dietary vitamin A.

    Science.gov (United States)

    Harrison, Earl H

    2005-01-01

    Mechanisms involved in the digestion and absorption of dietary vitamin A require the participation of several proteins. Dietary retinyl esters are hydrolyzed in the intestine by the pancreatic enzyme, pancreatic triglyceride lipase, and intestinal brush border enzyme, phospholipase B. Unesterified retinol taken up by the enterocyte is complexed with cellular retinol-binding protein type 2 and the complex serves as a substrate for reesterification of the retinol by the enzyme lecithin:retinol acyltransferase (LRAT). The retinyl esters are then incorporated into chylomicrons, intestinal lipoproteins containing other dietary lipids, such as triglycerides, phospholipids, and free and esterified cholesterol, and apolipoprotein B. Chylomicrons containing newly absorbed retinyl esters are then secreted into the lymph. Although under normal dietary conditions much of the dietary vitamin A is absorbed via the chylomicron/lymphatic route, it is also clear that under some circumstances there is substantial absorption of unesterified retinol via the portal route. Evidence supports the idea that the cellular uptake and efflux of unesterified retinol by enterocytes is mediated by lipid transporters, but the exact number, identity, and role of these proteins is not known and is an active area of research.

  12. Uptake, absorption efficiency and elimination of DDT in marine phytoplankton, copepods and fish

    International Nuclear Information System (INIS)

    Wang Xinhong; Wang Wenxiong

    2005-01-01

    Uptake, absorption efficiency and elimination of DDT were measured in marine phytoplankton, copepods (Acartia erythraea) and fish (mangrove snappers Lutjanus argentimaculatus). The uptake rate constant of DDT from water decreased with increasing trophic level. The dietary absorption efficiency (AE) of DDT was 10-29% in copepods and 72-99% in fish. Food concentration did not significantly affect the AEs of DDT, but the AEs varied considerably among the different food diets. The elimination rate constants of DDT by the copepods were comparable following uptake from the diet and from the water. Elimination of DDT from the fish was exceedingly low. Both aqueous and dietary uptake are equally important for DDT accumulation in the copepods. In fish, dissolved exposure is a more significant route than intake from the diet. The predicted trophic transfer factors in the copepods and the fish are consistent with the field measurements in marine zooplankton and fish. -Biomagnification and exposure of DDT in a marine food chain is demonstrated by measurements of uptake and elimination rates and kinetic modeling

  13. Dietary fat and carcinogenesis

    NARCIS (Netherlands)

    Woutersen, R.A.; Appel, M.J.; Garderen-Hoetmer, A. van; Wijnands, M.V.W.

    1999-01-01

    Epidemiologic investigations have suggested a relationship between dietary fat intake and various types of cancer incidences. Furthermore, epidemiologic studies as well as studies with animal models have demonstrated that not only the amount but also the type of fat consumed is important. At

  14. Root uptake of transuranic elements

    International Nuclear Information System (INIS)

    Schulz, R.K.

    1977-01-01

    The uptake of elements by plant roots is one of the important pathways of entry of many elements into the food chain of man. Data are cited showing plutonium concentration ratios, plant/soil, ranging from 10 -10 to 10 -3 . Concentration ratios for americium range from 10 -7 to 10 +1 . Limited experiments with curium and neptunium indicate that root uptake of curium is similar to that of americium and that plant uptake of neptunium is substantially larger than that of curium and americium. The extreme ranges of concentration ratios cited for plutonium and americium are due to a number of causes. Experimental conditions such as very intensive cropping will lead to abnormally high concentration ratios. In some experiments, addition of chelating agents markedly increased plant root uptake of transuranic elements. Particle size and composition of the source material influenced uptake of the transuranics by plants. Translocation within the plant, and soil factors such as pH and organic matter content, all affect concentration ratios

  15. Subtractive hybridization and random arbitrarily primed PCR analyses of a benzoate-assimilating bacterium, Desulfotignum balticum.

    Science.gov (United States)

    Habe, Hiroshi; Kobuna, Akinori; Hosoda, Akifumi; Kouzuma, Atsushi; Yamane, Hisakazu; Nojiri, Hideaki; Omori, Toshio; Watanabe, Kazuya

    2008-05-01

    Subtractive hybridization (SH) and random arbitrarily primed PCR (RAP-PCR) were used to detect genes involved in anaerobic benzoate degradation by Desulfotignum balticum. Through SH, we obtained 121 DNA sequences specific for D. balticum but not for D. phosphitoxidans (a non-benzoate-assimilating species). Furthermore, RAP-PCR analysis showed that a 651-bp DNA fragment, having 55% homology with the solute-binding protein of the ABC transporter system in Methanosarcina barkeri, was expressed when D. balticum was grown on benzoate, but not on pyruvate. By shotgun sequencing of the fosmid clone (38,071 bp) containing the DNA fragment, 33 open reading frames (ORFs) and two incomplete ORFs were annotated, and several genes within this region corresponded to the DNA fragments obtained by SH. An 11.3-kb gene cluster (ORF10-17) revealed through reverse transcription-PCR showed homology with the ABC transporter system and TonB-dependent receptors, both of which are presumably involved in the uptake of siderophore/heme/vitamin B(12), and was expressed in response to growth on benzoate.

  16. Structure-cytotoxicity relationships for dietary flavonoids

    DEFF Research Database (Denmark)

    Breinholt, V.; Dragsted, L.O.

    1998-01-01

    The cytotoxicity of a large series of dietary flavonoids was tested in a non-tumorigenic mouse and two human cancer cell lines, using the neutral red dye exclusion assay. All compounds tested exhibited a concentration-dependent cytotoxic action in the employed cell lines. The relative cytotoxicity...... of the flavonoids, however, Tvas found to vary greatly among the different cell Lines. With a few exceptions, the investigated flavonoids were more cytotoxic to the human cancer cell lines, than the mouse cell line. The differences in cytotoxicity were accounted for in part by differences in cellular uptake...... and metabolic capacity among the different cell types. In 3T3 cells fairly consistent structure-cytotoxicity relationships were found. The most cytotoxic structures tested in 3T3 cells were flavonoids with adjacent 3',4' hydroxy groups on the B-ring, such as luteolin, quercetin, myricetin, fisetin, eriodictyol...

  17. Influence of plant root morphology and tissue composition on phenanthrene uptake: Stepwise multiple linear regression analysis

    International Nuclear Information System (INIS)

    Zhan, Xinhua; Liang, Xiao; Xu, Guohua; Zhou, Lixiang

    2013-01-01

    Polycyclic aromatic hydrocarbons (PAHs) are contaminants that reside mainly in surface soils. Dietary intake of plant-based foods can make a major contribution to total PAH exposure. Little information is available on the relationship between root morphology and plant uptake of PAHs. An understanding of plant root morphologic and compositional factors that affect root uptake of contaminants is important and can inform both agricultural (chemical contamination of crops) and engineering (phytoremediation) applications. Five crop plant species are grown hydroponically in solutions containing the PAH phenanthrene. Measurements are taken for 1) phenanthrene uptake, 2) root morphology – specific surface area, volume, surface area, tip number and total root length and 3) root tissue composition – water, lipid, protein and carbohydrate content. These factors are compared through Pearson's correlation and multiple linear regression analysis. The major factors which promote phenanthrene uptake are specific surface area and lipid content. -- Highlights: •There is no correlation between phenanthrene uptake and total root length, and water. •Specific surface area and lipid are the most crucial factors for phenanthrene uptake. •The contribution of specific surface area is greater than that of lipid. -- The contribution of specific surface area is greater than that of lipid in the two most important root morphological and compositional factors affecting phenanthrene uptake

  18. Investigation of glycerol assimilation and cofactor metabolism in Lactococcus lactis

    DEFF Research Database (Denmark)

    Holm, Anders Koefoed

    of glycerol kinase from L. lactis, introduction of a heterologous glycerol assimilation pathway and construction of a library of NADH oxidase activity. Based on a preliminary analysis of transcription level data, an attempt was made to stimulate glycerol assimilation by overexpressing the glycerol kinase...... already present in L. lactis. The construction and verification of a strain with increased glycerol kinase activity was not fully completed and is still ongoing. Similarly the construction of mutants expressing a heterologous pathway for glycerol dissimilation is also an ongoing task. An artificial...... effects and improve the growth rate, though not completely to the level of the reference strain. The fact that this effect was predominantly observed while utilizing xylose implicates the involvement of the pentose phosphate pathway. A possible mechanism underlying the observed growth characteristics...

  19. Assimilation and transformation of benzene by higher plants

    Energy Technology Data Exchange (ETDEWEB)

    Durmishidze, S V; Ugrekhelidze, D Sh; Dzhikiya, A N

    1974-01-01

    Higher plants are capable of assimilating benzene, the molecules of which are subjected to deep chemical transformations; the products of its metabolism move along the plant. Taking part in total metabolism, carbon atoms of benzene molecules incorporate into composition of low-molecular compounds of the plant cell. The bulk of benzene carbon incorporates into composition of organic acids and a comparatively small part - into composition of amino acids. In the metabolism process benzene carbon localizes mainly in the chloroplasts. Phenol, muconic acid and CO/sub 2/ are isolated and identified from the products of benzene enzymatic oxidation. A range of benzene assimilation by higher plants is extremely wide. 9 references, 5 tables.

  20. Data Assimilation by Conditioning of Driving Noise on Future Observations

    KAUST Repository

    Lee, Wonjung

    2014-08-01

    Conventional recursive filtering approaches, designed for quantifying the state of an evolving stochastic dynamical system with intermittent observations, use a sequence of i) an uncertainty propagation step followed by ii) a step where the associated data is assimilated using Bayes\\' rule. Alternatively, the order of the steps can be switched to i) one step ahead data assimilation followed by ii) uncertainty propagation. In this paper, we apply this smoothing-based sequential filter to systems driven by random noise, however with the conditioning on future observation not only to the system variable but to the driving noise. Our research reveals that, for the nonlinear filtering problem, the conditioned driving noise is biased by a nonzero mean and in turn pushes forward the filtering solution in time closer to the true state when it drives the system. As a result our proposed method can yield a more accurate approximate solution for the state estimation problem. © 1991-2012 IEEE.

  1. Ensemble-Based Data Assimilation in Reservoir Characterization: A Review

    Directory of Open Access Journals (Sweden)

    Seungpil Jung

    2018-02-01

    Full Text Available This paper presents a review of ensemble-based data assimilation for strongly nonlinear problems on the characterization of heterogeneous reservoirs with different production histories. It concentrates on ensemble Kalman filter (EnKF and ensemble smoother (ES as representative frameworks, discusses their pros and cons, and investigates recent progress to overcome their drawbacks. The typical weaknesses of ensemble-based methods are non-Gaussian parameters, improper prior ensembles and finite population size. Three categorized approaches, to mitigate these limitations, are reviewed with recent accomplishments; improvement of Kalman gains, add-on of transformation functions, and independent evaluation of observed data. The data assimilation in heterogeneous reservoirs, applying the improved ensemble methods, is discussed on predicting unknown dynamic data in reservoir characterization.

  2. Herbicides effect on the nitrogen fertilizer assimilation by sensitive plants

    International Nuclear Information System (INIS)

    Ladonin, V.F.; Samojlov, L.N.

    1976-01-01

    It has been established in studying the effect of herbicides on pea plants that the penetration of the preparations into the tissues of leaves and stems results in a slight increase of the rate of formation of dry substance in the leaves of the treated plants within 24 hours after treatment as compared with control, whereas in the last period of the analysis the herbicides strongly inhibit the formation of dry substance in leaves. The applied herbicide doses have resulted in drastic changes of the distribution of the plant-assimilated nitrogen between the protein and non-protein fractions in the leaves and stems of pea. When affected by the studied herbicides, the fertilizer nitrogen supply to the pea plants changes and the rate of the fertilizer nitrogen assimilation by the plants varies noticeably. The regularities of the fertilizer nitrogen inclusion in the protein and non-protein nitrogen compounds of the above-ground pea organs have been studied

  3. Data assimilation in the hydrological dispersion module of Rodos

    International Nuclear Information System (INIS)

    Madsen, H.

    2003-01-01

    Full text: The Hydrological Dispersion Module (HDM) of the Real Time On-line Decision Support System for Nuclear Emergencies in Europe (RODOS) simulates the transport and dispersion of radionuclides in the aquatic environment. This includes wash-off from watersheds following an atmospheric deposition as well as direct releases and transport and sedimentation in rivers, lakes and reservoirs. The output from the HDM is used by the aquatic food and dose module in RODOS for calculating the transfer of radionuclides to man and the resulting radiation exposure. A data assimilation system is presently being developed for the HDM that effectively combines the numerical models with radionuclide measurements in order to improve the capabilities for prediction of radionuclide contamination of the aquatic environment. In addition, the data assimilation system offers a consistent framework for addressing model and measurement uncertainties and quantifying the resulting prediction uncertainty of the radionuclide contamination. The system will provide decision makers with more accurate forecasts of the radionuclide contamination as well as the associated uncertainty, and hence provide the basis for more efficient emergency management. One of the main uncertainties in the modelling of radionuclide wash-off from watersheds is related to the concentration and spatial distribution of the radionuclide deposition. In addition, for key model parameters such as wash-off coefficients, partition coefficients, and exchange rates for the 'water - suspended sediment' and 'suspended sediment - bottom layer' systems only rough and highly uncertain estimates can be given which introduce additional uncertainties. In the case of direct release into the water bodies, the uncertainty of the release rate will further add to the model prediction uncertainty. The deposition and the associated uncertainty are obtained from the Deposition Monitoring Module (DeMM). Thus, when gamma dose rate measurements

  4. Mathematical foundations of hybrid data assimilation from a synchronization perspective

    Science.gov (United States)

    Penny, Stephen G.

    2017-12-01

    The state-of-the-art data assimilation methods used today in operational weather prediction centers around the world can be classified as generalized one-way coupled impulsive synchronization. This classification permits the investigation of hybrid data assimilation methods, which combine dynamic error estimates of the system state with long time-averaged (climatological) error estimates, from a synchronization perspective. Illustrative results show how dynamically informed formulations of the coupling matrix (via an Ensemble Kalman Filter, EnKF) can lead to synchronization when observing networks are sparse and how hybrid methods can lead to synchronization when those dynamic formulations are inadequate (due to small ensemble sizes). A large-scale application with a global ocean general circulation model is also presented. Results indicate that the hybrid methods also have useful applications in generalized synchronization, in particular, for correcting systematic model errors.

  5. Regulation of assimilate partitioning by daylength and spectral quality

    Energy Technology Data Exchange (ETDEWEB)

    Britz, S.J. [USDA-Climate Stress Lab., Beltsville, MD (United States)

    1994-12-31

    Photosynthesis is the process by which plants utilize light energy to assimilate and transform carbon dioxide into products that support growth and development. The preceding review provides an excellent summary of photosynthetic mechanisms and diurnal patterns of carbon metabolism with emphasis on the importance of gradual changes in photosynthetically-active radiation at dawn and dusk. In addition to these direct effects of irradiance, there are indirect effects of light period duration and spectral quality on carbohydrate metabolism and assimilate partitioning. Both daylength and spectral quality trigger developmental phenomena such as flowering (e.g., photoperiodism) and shade avoidance responses, but their effects on partitioning of photoassimilates in leaves are less well known. Moreover, the adaptive significance to the plants of such effects is sometimes not clear.

  6. Leaching of assimilable silicon species from fly ash

    International Nuclear Information System (INIS)

    Piekos, R.; Paslawska, S.

    1998-01-01

    The objective of this study was to investigate the leaching of assimilable silicon species from coal fly ash with distilled water, sea waterand synthetic sea water at various fly ash/water ratios, pHs and temperatures. At the 1 g/100 ml fly ash/water ratio, less than 1 mg Si was found in 11 of aqueous slurries over the pH range 4-8 after 2 h at ambient temperature. The leaching was most effective at pH 10.5. At the fly ash/waterratio indicated, the pH of the suspensions decreased from 10.4 to 8.4 after 5days. The pH of fly ash slurries in sea water varied only slightly over time as compared with that in distilled water. Generally, the leaching of assimilable silicon species with distilled water was more intense than that with the sea water. 27 refs., 6 figs., 3 tabs

  7. DARLA: Data Assimilation and Remote Sensing for Littoral Applications

    Science.gov (United States)

    2017-03-01

    at reasonable logistical or financial costs . Remote sensing provides an attractive alternative. We discuss the range of different sensors that are...DARLA: Data Assimilation and Remote Sensing for Littoral Applications Final Report Award Number: N000141010932 Andrew T. Jessup Chris Chickadel...20. Radermacher, M., M. Wengrove, J. V. de Vries, and R. Holman (2014), Applicability of video-derived bathymetry estimates to nearshore current

  8. Nitrogen and sulfur assimilation in plants and algae

    Czech Academy of Sciences Publication Activity Database

    Giordano, Mario; Raven, John A.

    2014-01-01

    Roč. 118, č. 2 (2014), s. 45-61 ISSN 0304-3770 Grant - others:University of Dundee(GB) SC 015096; Italian Ministry for Agriculture(IT) MIPAF, Bioforme project; Italian Ministry of Foreign Affairs(IT) MAE. Joint Italian-Israel Cooperation Program Institutional support: RVO:61388971 Keywords : nitrogen * sulfur * assimilation * algae Subject RIV: EE - Microbiology, Virology Impact factor: 1.608, year: 2014

  9. Bayesian Nonlinear Assimilation of Eulerian and Lagrangian Coastal Flow Data

    Science.gov (United States)

    2015-09-30

    Lagrangian Coastal Flow Data Dr. Pierre F.J. Lermusiaux Department of Mechanical Engineering Center for Ocean Science and Engineering Massachusetts...Develop and apply theory, schemes and computational systems for rigorous Bayesian nonlinear assimilation of Eulerian and Lagrangian coastal flow data...coastal ocean fields, both in Eulerian and Lagrangian forms. - Further develop and implement our GMM-DO schemes for robust Bayesian nonlinear estimation

  10. Carbon and nitrogen assimilation in deep subseafloor microbial cells

    OpenAIRE

    Morono, Yuki; Terada, Takeshi; Nishizawa, Manabu; Ito, Motoo; Hillion, François; Takahata, Naoto; Sano, Yuji; Inagaki, Fumio

    2011-01-01

    Remarkable numbers of microbial cells have been observed in global shallow to deep subseafloor sediments. Accumulating evidence indicates that deep and ancient sediments harbor living microbial life, where the flux of nutrients and energy are extremely low. However, their physiology and energy requirements remain largely unknown. We used stable isotope tracer incubation and nanometer-scale secondary ion MS to investigate the dynamics of carbon and nitrogen assimilation activities in individua...

  11. AMSR2 all-sky radiance assimilation and its impact on the analysis and forecast of Hurricane Sandy with a limited-area data assimilation system

    Directory of Open Access Journals (Sweden)

    Chun Yang

    2016-06-01

    Full Text Available A method to assimilate all-sky radiances from the Advanced Microwave Scanning Radiometer 2 (AMSR2 was developed within the Weather Research and Forecasting (WRF model's data assimilation (WRFDA system. The four essential elements are: (1 extending the community radiative transform model's (CRTM interface to include hydrometeor profiles; (2 using total water Qt as the moisture control variable; (3 using a warm-rain physics scheme for partitioning the Qt increment into individual increments of water vapour, cloud liquid water and rain; and (4 adopting a symmetric observation error model for all-sky radiance assimilation.Compared to a benchmark experiment with no AMSR2 data, the impact of assimilating clear-sky or all-sky AMSR2 radiances on the analysis and forecast of Hurricane Sandy (2012 was assessed through analysis/forecast cycling experiments using WRF and WRFDA's three-dimensional variational (3DVAR data assimilation scheme. With more cloud/precipitation-affected data being assimilated around tropical cyclone (TC core areas in the all-sky AMSR2 assimilation experiment, better analyses were obtained in terms of the TC's central sea level pressure (CSLP, warm-core structure and cloud distribution. Substantial (>20 % error reduction in track and CSLP forecasts was achieved from both clear-sky and all-sky AMSR2 assimilation experiments, and this improvement was consistent from the analysis time to 72-h forecasts. Moreover, the all-sky assimilation experiment consistently yielded better track and CSLP forecasts than the clear-sky did for all forecast lead times, due to a better analysis in the TC core areas. Positive forecast impact from assimilating AMSR2 radiances is also seen when verified against the European Center for Medium-Range Weather Forecasts (ECMWF analysis and the Stage IV precipitation analysis, with an overall larger positive impact from the all-sky assimilation experiment.

  12. Understanding nitrate uptake, signaling and remobilisation for improving plant nitrogen use efficiency.

    Science.gov (United States)

    Kant, Surya

    2018-02-01

    The majority of terrestrial plants use nitrate as their main source of nitrogen. Nitrate also acts as an important signalling molecule in vital physiological processes required for optimum plant growth and development. Improving nitrate uptake and transport, through activation by nitrate sensing, signalling and regulatory processes, would enhance plant growth, resulting in improved crop yields. The increased remobilisation of nitrate, and assimilated nitrogenous compounds, from source to sink tissues further ensures higher yields and quality. An updated knowledge of various transporters, genes, activators, and microRNAs, involved in nitrate uptake, transport, remobilisation, and nitrate-mediated root growth, is presented. An enhanced understanding of these components will allow for their orchestrated fine tuning in efforts to improving nitrogen use efficiency in plants. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

  13. Lactate, Glucose and Oxygen Uptake in Human Brain During Recovery from Maximal Exercise

    DEFF Research Database (Denmark)

    Kojiro, I.; Schmalbruch, I.K.; Quistorff, B.

    1999-01-01

    Skeletal muscle, brain lactate uptake, brain oxygen uptake, energy metabolism, brain glucose uptake......Skeletal muscle, brain lactate uptake, brain oxygen uptake, energy metabolism, brain glucose uptake...

  14. Data assimilation in the early phase: Kalman filtering RIMPUFF

    International Nuclear Information System (INIS)

    Astrup, P.; Turcanu, C.; Puch, R.O.; Palma, C.R.; Mikkelsen, T.

    2004-09-01

    In the framework of the DAONEM project (Data Assimilation for Off-site Nuclear Emergency Management), a data assimilation module, ADUM (Atmospheric Dispersion Updating Module), for the mesoscale atmospheric dispersion program RIMPUFF (Risoe Mesoscale Puff model) part of the early-phase programs of RODOS (Realtime Online DecisiOn Support system for nuclear emergencies) has been developed. It is built on the Kalman filtering algorithm and it assimilates 10-minute averaged gamma dose rates measured at ground level stations. Since the gamma rates are non-linear functions of the state vector variables, the applied Kalman filter is the so-called Extended Kalman filter. In more ways the implementation is non standard: 1) the number of state vector variables varies with time, and 2) the state vector variables are prediction updated with 1-minute time steps but only Kalman filtered every 10 minutes, and this based on time averaged measurements. Given reasonable conditions, i.e. a spatially dense distribution of gamma monitors and a realistic wind field, the developed ADUM module is found to be able to enhance the prediction of the gamma dose field. Based on some of the Kalman filtering parameters, another module, ToDeMM, has been developed for providing the late-phase DeMM (Deposition Monitoring Module) of RODOS with an ensemble of fields of ground level air concentrations and wet deposited material. This accounts for the uncertainty estimation of this kind of quantities as calculated by RIMPUFF for use by DeMM. (au)

  15. Oxidation and Assimilation of Carbohydrates by Micrococcus sodonensis1

    Science.gov (United States)

    Perry, Jerome J.; Evans, James B.

    1966-01-01

    Perry, Jerome J. (North Carolina State University, Raleigh), and James B. Evans. Oxidation and assimilation of carbohydrates by Micrococcus sodonensis. J. Bacteriol. 91:33–38. 1966.—Micrococcus sodonensis is a biotin-requiring strict aerobe that cannot utilize carbohydrates as sole sources of carbon and energy. However, addition of mannose, glucose, sucrose, or maltose to a medium on which the organism can grow resulted in an increase in total growth. M. sodonensis oxidized these sugars without induction, thus indicating the presence of constitutive enzymes for their transport, activation, and metabolism. Under appropriate nonproliferating cell conditions, glucose was readily incorporated into essential constituents of the cell. When glucose-1-C14 and glucose-6-C14 were oxidized by nonproliferating cells, the label was found in both the protein and nucleic acid fractions of the cell. The respiratory quotients of cells oxidizing glucose in saline and in phosphate buffer indicated assimilation of sugar carbon in buffer and virtually no assimilation in saline. The ability of M. sodonensis to completely oxidize glucose and to grow on intermediates of glucose oxidation but not on glucose suggests that glucose may suppress or repress some reaction(s) necessary for growth, and that growth substrates either derepress or circumvent this block. PMID:5903100

  16. Nonlinear problems in data-assimilation : Can synchronization help?

    Science.gov (United States)

    Tribbia, J. J.; Duane, G. S.

    2009-12-01

    Over the past several years, operational weather centers have initiated ensemble prediction and assimilation techniques to estimate the error covariance of forecasts in the short and the medium range. The ensemble techniques used are based on linear methods. The theory This technique s been shown to be a useful indicator of skill in the linear range where forecast errors are small relative to climatological variance. While this advance has been impressive, there are still ad hoc aspects of its use in practice, like the need for covariance inflation which are troubling. Furthermore, to be of utility in the nonlinear range an ensemble assimilation and prediction method must be capable of giving probabilistic information for the situation where a probability density forecast becomes multi-modal. A prototypical, simplest example of such a situation is the planetary-wave regime transition where the pdf is bimodal. Our recent research show how the inconsistencies and extensions of linear methodology can be consistently treated using the paradigm of synchronization which views the problems of assimilation and forecasting as that of optimizing the forecast model state with respect to the future evolution of the atmosphere.

  17. Data assimilation in the decision support system RODOS

    International Nuclear Information System (INIS)

    Rojas-Palma, C.; Madsen, H.; Gering, F.; Puch, R.; Turcanu, C.; Astrup, P.; Mueller, H.; Richter, K.; Zheleznyak, M.; Treebushny, D.; Kolomeev, M.; Kamaev, D.; Wynn, H.

    2003-01-01

    Model predictions for a rapid assessment and prognosis of possible radiological consequences after an accidental release of radionuclides play an important role in nuclear emergency management. Radiological observations, e.g. dose rate measurements, can be used to improve such model predictions. The process of combining model predictions and observations, usually referred to as data assimilation, is described in this article within the framework of the real time on-line decision support system (RODOS) for off-site nuclear emergency management in Europe. Data assimilation capabilities, based on Kalman filters,are under development for several modules of the RODOS system, including the atmospheric dispersion, deposition, food chain and hydrological models. The use of such a generic data assimilation methodology enables the propagation of uncertainties throughout the various modules of the system. This would in turn provide decision makers with uncertainty estimates taking into account both model and observation errors. This paper describes the methodology employed as well as results of some preliminary studies based on simulated data. (author)

  18. Regime-dependence of Impacts of Radar Rainfall Data Assimilation

    Science.gov (United States)

    Craig, G. C.; Keil, C.

    2009-04-01

    Experience from the first operational trials of assimilation of radar data in kilometre scale numerical weather prediction models (operating without cumulus parameterisation) shows that the positive impact of the radar data on convective precipitation forecasts typically decay within a few hours, although certain cases show much longer impacts. Here the impact time of radar data assimilation is related to characteristics of the meteorological environment. This QPF uncertainty is investigated using an ensemble of 10 forecasts at 2.8 km horizontal resolution based on different initial and boundary conditions from a global forecast ensemble. Control forecasts are compared with forecasts where radar reflectivity data is assimilated using latent heat nudging. Examination of different cases of convection in southern Germany suggests that the forecasts can be separated into two regimes using a convective timescale. Short impact times are associated with short convective timescales that are characteristic of equilibrium convection. In this regime the statistical properties of the convection are constrained by the large-scale forcing, and effects of the radar data are lost within a few hours as the convection rapidly returns to equilibrium. When the convective timescale is large (non-equilibrium conditions), the impact of the radar data is longer since convective systems are triggered by the latent heat nudging and are able to persist for many hours in the very unstable conditions present in these cases.

  19. Assimilation of Biophysical Neuronal Dynamics in Neuromorphic VLSI.

    Science.gov (United States)

    Wang, Jun; Breen, Daniel; Akinin, Abraham; Broccard, Frederic; Abarbanel, Henry D I; Cauwenberghs, Gert

    2017-12-01

    Representing the biophysics of neuronal dynamics and behavior offers a principled analysis-by-synthesis approach toward understanding mechanisms of nervous system functions. We report on a set of procedures assimilating and emulating neurobiological data on a neuromorphic very large scale integrated (VLSI) circuit. The analog VLSI chip, NeuroDyn, features 384 digitally programmable parameters specifying for 4 generalized Hodgkin-Huxley neurons coupled through 12 conductance-based chemical synapses. The parameters also describe reversal potentials, maximal conductances, and spline regressed kinetic functions for ion channel gating variables. In one set of experiments, we assimilated membrane potential recorded from one of the neurons on the chip to the model structure upon which NeuroDyn was designed using the known current input sequence. We arrived at the programmed parameters except for model errors due to analog imperfections in the chip fabrication. In a related set of experiments, we replicated songbird individual neuron dynamics on NeuroDyn by estimating and configuring parameters extracted using data assimilation from intracellular neural recordings. Faithful emulation of detailed biophysical neural dynamics will enable the use of NeuroDyn as a tool to probe electrical and molecular properties of functional neural circuits. Neuroscience applications include studying the relationship between molecular properties of neurons and the emergence of different spike patterns or different brain behaviors. Clinical applications include studying and predicting effects of neuromodulators or neurodegenerative diseases on ion channel kinetics.

  20. Application of statistical dynamical turbulence closures to data assimilation

    International Nuclear Information System (INIS)

    O'Kane, Terence J; Frederiksen, Jorgen S

    2010-01-01

    We describe the development of an accurate yet computationally tractable statistical dynamical closure theory for general inhomogeneous turbulent flows, coined the quasi-diagonal direct interaction approximation closure (QDIA), and its application to problems in data assimilation. The QDIA provides prognostic equations for evolving mean fields, covariances and higher-order non-Gaussian terms, all of which are also required in the formulation of data assimilation schemes for nonlinear geophysical flows. The QDIA is a generalization of the class of direct interaction approximation theories, initially developed by Kraichnan (1959 J. Fluid Mech. 5 497) for isotropic turbulence, to fully inhomogeneous flows and has been further generalized to allow for both inhomogeneous and non-Gaussian initial conditions and long integrations. A regularization procedure or empirical vertex renormalization that ensures correct inertial range spectra is also described. The aim of this paper is to provide a coherent mathematical description of the QDIA turbulence closure and closure-based data assimilation scheme we have labeled the statistical dynamical Kalman filter. The mathematical formalism presented has been synthesized from recent works of the authors with some additional material and is presented in sufficient detail that the paper is of a pedagogical nature.

  1. Data assimilation method based on the constraints of confidence region

    Science.gov (United States)

    Li, Yong; Li, Siming; Sheng, Yao; Wang, Luheng

    2018-03-01

    The ensemble Kalman filter (EnKF) is a distinguished data assimilation method that is widely used and studied in various fields including methodology and oceanography. However, due to the limited sample size or imprecise dynamics model, it is usually easy for the forecast error variance to be underestimated, which further leads to the phenomenon of filter divergence. Additionally, the assimilation results of the initial stage are poor if the initial condition settings differ greatly from the true initial state. To address these problems, the variance inflation procedure is usually adopted. In this paper, we propose a new method based on the constraints of a confidence region constructed by the observations, called EnCR, to estimate the inflation parameter of the forecast error variance of the EnKF method. In the new method, the state estimate is more robust to both the inaccurate forecast models and initial condition settings. The new method is compared with other adaptive data assimilation methods in the Lorenz-63 and Lorenz-96 models under various model parameter settings. The simulation results show that the new method performs better than the competing methods.

  2. Motion estimation by data assimilation in reduced dynamic models

    International Nuclear Information System (INIS)

    Drifi, Karim

    2013-01-01

    Motion estimation is a major challenge in the field of image sequence analysis. This thesis is a study of the dynamics of geophysical flows visualized by satellite imagery. Satellite image sequences are currently underused for the task of motion estimation. A good understanding of geophysical flows allows a better analysis and forecast of phenomena in domains such as oceanography and meteorology. Data assimilation provides an excellent framework for achieving a compromise between heterogeneous data, especially numerical models and observations. Hence, in this thesis we set out to apply variational data assimilation methods to estimate motion on image sequences. As one of the major drawbacks of applying these assimilation techniques is the considerable computation time and memory required, we therefore define and use a model reduction method in order to significantly decrease the necessary computation time and the memory. We then explore the possibilities that reduced models provide for motion estimation, particularly the possibility of strictly imposing some known constraints on the computed solutions. In particular, we show how to estimate a divergence free motion with boundary conditions on a complex spatial domain [fr

  3. Uncertainty of Flood Forecasting Based on Radar Rainfall Data Assimilation

    Directory of Open Access Journals (Sweden)

    Xinchi Chen

    2016-01-01

    Full Text Available Precipitation is the core data input to hydrological forecasting. The uncertainty in precipitation forecast data can lead to poor performance of predictive hydrological models. Radar-based precipitation measurement offers advantages over ground-based measurement in the quantitative estimation of temporal and spatial aspects of precipitation, but errors inherent in this method will still act to reduce the performance. Using data from White Lotus River of Hubei Province, China, five methods were used to assimilate radar rainfall data transformed from the classified Z-R relationship, and the postassimilation data were compared with precipitation measured by rain gauges. The five sets of assimilated rainfall data were then used as input to the Xinanjiang model. The effect of precipitation data input error on runoff simulation was analyzed quantitatively by disturbing the input data using the Breeding of Growing Modes method. The results of practical application demonstrated that the statistical weight integration and variational assimilation methods were superior. The corresponding performance in flood hydrograph prediction was also better using the statistical weight integration and variational methods compared to the others. It was found that the errors of radar rainfall data disturbed by the Breeding of Growing Modes had a tendency to accumulate through the hydrological model.

  4. DATA ASSIMILATION APPROACH FOR FORECAST OF SOLAR ACTIVITY CYCLES

    Energy Technology Data Exchange (ETDEWEB)

    Kitiashvili, Irina N., E-mail: irina.n.kitiashvili@nasa.gov [NASA Ames Research Center, Moffett Field, Mountain View, CA 94035 (United States)

    2016-11-01

    Numerous attempts to predict future solar cycles are mostly based on empirical relations derived from observations of previous cycles, and they yield a wide range of predicted strengths and durations of the cycles. Results obtained with current dynamo models also deviate strongly from each other, thus raising questions about criteria to quantify the reliability of such predictions. The primary difficulties in modeling future solar activity are shortcomings of both the dynamo models and observations that do not allow us to determine the current and past states of the global solar magnetic structure and its dynamics. Data assimilation is a relatively new approach to develop physics-based predictions and estimate their uncertainties in situations where the physical properties of a system are not well-known. This paper presents an application of the ensemble Kalman filter method for modeling and prediction of solar cycles through use of a low-order nonlinear dynamo model that includes the essential physics and can describe general properties of the sunspot cycles. Despite the simplicity of this model, the data assimilation approach provides reasonable estimates for the strengths of future solar cycles. In particular, the prediction of Cycle 24 calculated and published in 2008 is so far holding up quite well. In this paper, I will present my first attempt to predict Cycle 25 using the data assimilation approach, and discuss the uncertainties of that prediction.

  5. Bioavailability of contaminants estimated from uptake rates into soil invertebrates

    International Nuclear Information System (INIS)

    Straalen, N.M. van; Donker, M.H.; Vijver, M.G.; Gestel, C.A.M. van

    2005-01-01

    It is often argued that the concentration of a pollutant inside an organism is a good indicator of its bioavailability, however, we show that the rate of uptake, not the concentration itself, is the superior predictor. In a study on zinc accumulation and toxicity to isopods (Porcellio scaber) the dietary EC 50 for the effect on body growth was rather constant and reproducible, while the internal EC 50 varied depending on the accumulation history of the animals. From the data a critical value for zinc accumulation in P. scaber was estimated as 53 μg/g/wk. We review toxicokinetic models applicable to time-series measurements of concentrations in invertebrates. The initial slope of the uptake curve is proposed as an indicator of bioavailability. To apply the dynamic concept of bioavailability in risk assessment, a set of representative organisms should be chosen and standardized protocols developed for exposure assays by which suspect soils can be evaluated. - Sublethal toxicity of zinc to isopods suggests that bioavailability of soil contaminants is best measured by uptake rates, not by body burdens

  6. Assimilating solar-induced chlorophyll fluorescence into the terrestrial biosphere model BETHY-SCOPE v1.0: model description and information content

    Science.gov (United States)

    Norton, Alexander J.; Rayner, Peter J.; Koffi, Ernest N.; Scholze, Marko

    2018-04-01

    The synthesis of model and observational information using data assimilation can improve our understanding of the terrestrial carbon cycle, a key component of the Earth's climate-carbon system. Here we provide a data assimilation framework for combining observations of solar-induced chlorophyll fluorescence (SIF) and a process-based model to improve estimates of terrestrial carbon uptake or gross primary production (GPP). We then quantify and assess the constraint SIF provides on the uncertainty in global GPP through model process parameters in an error propagation study. By incorporating 1 year of SIF observations from the GOSAT satellite, we find that the parametric uncertainty in global annual GPP is reduced by 73 % from ±19.0 to ±5.2 Pg C yr-1. This improvement is achieved through strong constraint of leaf growth processes and weak to moderate constraint of physiological parameters. We also find that the inclusion of uncertainty in shortwave down-radiation forcing has a net-zero effect on uncertainty in GPP when incorporated into the SIF assimilation framework. This study demonstrates the powerful capacity of SIF to reduce uncertainties in process-based model estimates of GPP and the potential for improving our predictive capability of this uncertain carbon flux.

  7. Dietary Acculturation among Filipino Americans.

    Science.gov (United States)

    Vargas, Persephone; Jurado, Leo-Felix

    2015-12-22

    Acculturation, the subsequent changes that occur in one culture after continuous first hand contact with another culture, impacts the dietary habits and health risks of individuals. This study examines the acculturation, dietary habits and anthropometric measurements in a sample of 210 first generation Filipino American immigrants in New Jersey (NJ). Acculturation was measured using the Short Acculturation Scale for Filipino Americans (ASASFA). Dietary acculturation was measured using the Dietary Acculturation Questionnaire for Filipino Americans (DAQFA) and dietary intake was determined using the Block's Brief Food Frequency Questionnaire (BFFQ). Anthropometric measurements were obtained including weight, height and waist circumference. Acculturation had a significant negative relationship with Filipino Dietary acculturation. Western dietary acculturation was significantly correlated with caloric intake (r(208) = 0.193, p Filipino dietary acculturation, dietary intake and anthropometric measurements. The results showed that Filipino American immigrants have increased risks including increased BMI, waist circumference and increased fat intake. Over all, this research highlighted some dietary changes and their effects on dietary intake and health status.

  8. Dietary Acculturation among Filipino Americans

    Directory of Open Access Journals (Sweden)

    Persephone Vargas

    2015-12-01

    Full Text Available Acculturation, the subsequent changes that occur in one culture after continuous first hand contact with another culture, impacts the dietary habits and health risks of individuals. This study examines the acculturation, dietary habits and anthropometric measurements in a sample of 210 first generation Filipino American immigrants in New Jersey (NJ. Acculturation was measured using the Short Acculturation Scale for Filipino Americans (ASASFA. Dietary acculturation was measured using the Dietary Acculturation Questionnaire for Filipino Americans (DAQFA and dietary intake was determined using the Block’s Brief Food Frequency Questionnaire (BFFQ. Anthropometric measurements were obtained including weight, height and waist circumference. Acculturation had a significant negative relationship with Filipino Dietary acculturation. Western dietary acculturation was significantly correlated with caloric intake (r(208 = 0.193, p < 0.01, percentage fat intake (r(208 = 0.154, p < 0.05, percentage carbohydrate intake (r(208 = −0.172, p < 0.05, Body Mass Index (BMI (r(208 = 0.216, p < 0.01 and waist circumference (r(208 = 0.161, p < 0.01. There was no significant correlation between Filipino dietary acculturation, dietary intake and anthropometric measurements. The results showed that Filipino American immigrants have increased risks including increased BMI, waist circumference and increased fat intake. Over all, this research highlighted some dietary changes and their effects on dietary intake and health status.

  9. The Arabidopsis halophytic relative Thellungiella halophila tolerates nitrogen-limiting conditions by maintaining growth, nitrogen uptake, and assimilation.

    Science.gov (United States)

    Kant, Surya; Bi, Yong-Mei; Weretilnyk, Elizabeth; Barak, Simon; Rothstein, Steven J

    2008-07-01

    A comprehensive knowledge of mechanisms regulating nitrogen (N) use efficiency is required to reduce excessive input of N fertilizers while maintaining acceptable crop yields under limited N supply. Studying plant species that are naturally adapted to low N conditions could facilitate the identification of novel regulatory genes conferring better N use efficiency. Here, we show that Thellungiella halophila, a halophytic relative of Arabidopsis (Arabidopsis thaliana), grows better than Arabidopsis under moderate (1 mm nitrate) and severe (0.4 mm nitrate) N-limiting conditions. Thellungiella exhibited a lower carbon to N ratio than Arabidopsis under N limitation, which was due to Thellungiella plants possessing higher N content, total amino acids, total soluble protein, and lower starch content compared with Arabidopsis. Furthermore, Thellungiella had higher amounts of several metabolites, such as soluble sugars and organic acids, under N-sufficient conditions (4 mm nitrate). Nitrate reductase activity and NR2 gene expression in Thellungiella displayed less of a reduction in response to N limitation than in Arabidopsis. Thellungiella shoot GS1 expression was more induced by low N than in Arabidopsis, while in roots, Thellungiella GS2 expression was maintained under N limitation but was decreased in Arabidopsis. Up-regulation of NRT2.1 and NRT3.1 expression was higher and repression of NRT1.1 was lower in Thellungiella roots under N-limiting conditions compared with Arabidopsis. Differential transporter gene expression was correlated with higher nitrate influx in Thellungiella at low (15)NO(3)(-) supply. Taken together, our results suggest that Thellungiella is tolerant to N-limited conditions and could act as a model system to unravel the mechanisms for low N tolerance.

  10. Key aspects of stratospheric tracer modeling using assimilated winds

    Directory of Open Access Journals (Sweden)

    B. Bregman

    2006-01-01

    Full Text Available This study describes key aspects of global chemistry-transport models and their impact on stratospheric tracer transport. We concentrate on global models that use assimilated winds from numerical weather predictions, but the results also apply to tracer transport in general circulation models. We examined grid resolution, numerical diffusion, air parcel dispersion, the wind or mass flux update frequency, and time interpolation. The evaluation is performed with assimilated meteorology from the "operational analyses or operational data" (OD from the European Centre for Medium-Range Weather Forecasts (ECMWF. We also show the effect of the mass flux update frequency using the ECMWF 40-year re-analyses (ERA40. We applied the three-dimensional chemistry-transport Tracer Model version 5 (TM5 and a trajectory model and performed several diagnoses focusing on different transport regimes. Covering different time and spatial scales, we examined (1 polar vortex dynamics during the Arctic winter, (2 the large-scale stratospheric meridional circulation, and (3 air parcel dispersion in the tropical lower stratosphere. Tracer distributions inside the Arctic polar vortex show considerably worse agreement with observations when the model grid resolution in the polar region is reduced to avoid numerical instability. The results are sensitive to the diffusivity of the advection. Nevertheless, the use of a computational cheaper but diffusive advection scheme is feasible for tracer transport when the horizontal grid resolution is equal or smaller than 1 degree. The use of time interpolated winds improves the tracer distributions, particularly in the middle and upper stratosphere. Considerable improvement is found both in the large-scale tracer distribution and in the polar regions when the update frequency of the assimilated winds is increased from 6 to 3 h. It considerably reduces the vertical dispersion of air parcels in the tropical lower stratosphere. Strong

  11. Dietary Proteins and Angiogenesis

    Directory of Open Access Journals (Sweden)

    Miguel Ángel Medina

    2014-01-01

    Full Text Available Both defective and persistent angiogenesis are linked to pathological situations in the adult. Compounds able to modulate angiogenesis have a potential value for the treatment of such pathologies. Several small molecules present in the diet have been shown to have modulatory effects on angiogenesis. This review presents the current state of knowledge on the potential modulatory roles of dietary proteins on angiogenesis. There is currently limited available information on the topic. Milk contains at least three proteins for which modulatory effects on angiogenesis have been previously demonstrated. On the other hand, there is some scarce information on the potential of dietary lectins, edible plant proteins and high protein diets to modulate angiogenesis.

  12. [Dietary counseling in obesity].

    Science.gov (United States)

    Meyer, Nathalie; Haslebacher, Yvonne; Teuscher-Sick, Patricia; Fischer, Beatrice

    2013-02-01

    Information on weight management and a healthy eating is accessible to anyone. However, recommendations are inconsistent. This often leads to confusion rather than to real changes in eating behavior. The principle of a long-term weight reduction is based on the idea of achieving negative energy balance with a healthy, balanced and slightly hypocaloric diet. The regimen is neither supposed to be rigid nor should it ban any food products or food products. Changes in eating patterns come about step by step and the counseling approach should be based on the patient's habits and capabilities. The basic requirement to successfully treat obese patients is their own motivation Therefore, the timing of launching the therapy needs to be well chosen. Apart from goals directly concerning weight loss, goals related to well-being, general health and exercise should be set and pursued. However, the main focus should be on changes of dietary behavior. Dietary counseling is preferably embedded in a multidisciplinary treatment concept.

  13. Hg uptake in ureteral obstructions

    International Nuclear Information System (INIS)

    Desgrez, J.P.; Bourguignon, M.; Raynaud, C.; CEA, 91 - Orsay

    1976-01-01

    In the presence of a total obstruction the results obtained with the Hg uptake test, as indeed with other functional tests, inform on the value of the kidney function at the time but have no prognostic value where repair possibilities are concerned. Some preliminary results seem to show however that very soon after the obstacle is removed, by the 10th or 15th day perhaps, quantitative functional tests may once more be used to evaluate the functional prognosis. This would mean that by waiting about two weeks after the disappearance of a total obstruction the Hg uptake test may again be used in all confidence. In order to check this deduction, which is based on slender evidence but which nevertheless has important practical implications, the measurement of the Hg uptake rate during the days following removal of the obstacle appears essential. In long-standing partial obstructions the Hg uptake rate gives an accurate assessment of the functional balance and helps considerably in the choice of therapy [fr

  14. Cellular uptake of metallated cobalamins

    DEFF Research Database (Denmark)

    Tran, Mai Thanh Quynh; Stürup, Stefan; Lambert, Ian Henry

    2016-01-01

    Cellular uptake of vitamin B12-cisplatin conjugates was estimated via detection of their metal constituents (Co, Pt, and Re) by inductively coupled plasma mass spectrometry (ICP-MS). Vitamin B12 (cyano-cob(iii)alamin) and aquo-cob(iii)alamin [Cbl-OH2](+), which differ in the β-axial ligands (CN...

  15. Tumor uptake of radioruthenium compounds

    International Nuclear Information System (INIS)

    Srivastava, S.C.; Richards, P.; Meinken, G.E.; Larson, S.M.; Grunbaum, Z.

    1980-01-01

    The use of ruthenium-97 as a scintigraphic agent, particularly for tumor localization, is investigated. The tumor uptake of ruthenium chloride and ruthenium-labelled transferrin is evaluated and their application as tumor-imagine agents is compared to gallium-67 citrate

  16. Octreotide Uptake in Parathyroid Adenoma

    Directory of Open Access Journals (Sweden)

    Seyhan Karaçavuş

    2012-08-01

    Full Text Available The patient with a history of bone pain and muscle weakness, was thought to have oncogenic osteomalacia as a result of biochemical investigations and directed to Nuclear Medicine Department for a whole-body bone scintigraphy and 111In-octreotide scintigraphy. There was no focal pathologic tracer uptake, but generalized marked increase in skeletal uptake on bone scintigraphy. Octreotide scintigraphy showed accumulation of octreotide in the region of the left lobe of the thyroid gland in the neck. Thereafter, parathyroid scintigraphy was performed with technetium-99m labeled metroxy-isobutyl-isonitryl (99mTc-MIB and MIBI scan demonstrated radiotracer uptake at the same location with octreotide scintigraphy. The patient underwent left inferior parathyroidectomy and histopathology confirmed a parathyroid adenoma. Somatostatin receptor positive parathyroid adenoma may show octreotide uptake. Octreotide scintigraphy may be promising and indicate a possibility of using somatostatin analogues for the medical treatment of somatostatin receptor positive parathyroid tumors. (MIRT 2012;21:77-79

  17. Pathways of trace metal uptake in the lugworm Arenicola marina

    International Nuclear Information System (INIS)

    Casado-Martinez, M.C.; Smith, B.D.; Valls, T.A. del; Rainbow, P.S.

    2009-01-01

    Radiotracer techniques were used to determine the rates of trace metal (Ag, Cd and Zn) uptake and elimination (33 psu, 10 deg. C) from water and sediment by the deposit-feeding polychaete Arenicola marina, proposed as a test species for estuarine-marine sediments in whole-sediment toxicity tests. Metal uptake rates from solution increase with increasing dissolved metal concentrations, with uptake rate constants (± SE) (l g -1 d -1 ) of 1.21 ± 0.11 (Ag), 0.026 ± 0.002 (Zn) and 0.012 ± 0.001 (Cd). Assimilation efficiencies from ingested sediments were measured using a pulse-chase radiotracer feeding technique in two different lugworm populations, one from a commercial supplier (Blyth, Northumberland, UK) and the other a field-collected population from the outer Thames estuary (UK). Assimilation efficiencies ranged from 2 to 20% for Zn, 1 to 6% for Cd and 1 to 9% for Ag for the Northumberland worms, and from 3 to 22% for Zn, 6 to 70% for Cd and 2 to 15% for Ag in the case of the Thames population. Elimination of accumulated metals followed a two-compartment model, with similar efflux rate constants for Zn and Ag and lower rates of elimination of Cd from the slow pool. Efflux rate constants (± SE) of Zn and Ag accumulated from the dissolved phase were 0.037 ± 0.002 and 0.033 ± 0.006 d -1 whereas Cd was eliminated with an efflux rate constant one order of magnitude lower (0.003 ± 0.002 d -1 ). When metals were accumulated from ingested sediments, the efflux rate constants for the slow-exchanging compartment were of the same order of magnitude for the three metals, and of the same order of magnitude as those derived after the dissolved exposure for Zn and Ag (0.042 ± 0.004 and 0.056 ± 0.012 d -1 for Zn and 0.044 ± 0.012 and 0.069 ± 0.016 d -1 for Ag for the Northumberland and Thames populations, respectively). Cd accumulated from ingested sediments was eliminated with a rate constant not different from the fast-exchanging compartment after the water

  18. Ocean carbon uptake and storage

    International Nuclear Information System (INIS)

    Tilbrook, Bronte

    2007-01-01

    Full text: The ocean contains about 95% of the carbon in the atmosphere, ocean and land biosphere system, and is of fundamental importance in regulating atmospheric carbon dioxide concentrations. In the 1990s an international research effort involving Australia was established to determine the uptake and storage of anthropogenic C02 for all major ocean basins. The research showed that about 118 of the 244 + 20 billion tons of the anthropogenic carbon emitted through fossil fuel burning and cement production has been stored in the ocean since preindustrial times, thus helping reduce the rate of increase in atmospheric C02. The research also showed the terrestrial biosphere has been a small net source of C02 (39 ± 28 billion tons carbon) to the atmosphere over the same period. About 60% of the total ocean inventory of the anthropogenic C02 was found in the Southern Hemisphere, with most in the 30 0 S to 50 0 S latitude band. This mid-latitude band is where surface waters are subducted as Mode and Intermediate waters, which is a major pathway controlling ocean C02 uptake. High storage (23% of the total) also occurs in the North Atlantic, associated with deep water formation in that basin. The ocean uptake and storage is expected to increase in the coming decades as atmospheric C02 concentrations rise. However, a number of feedback mechanisms associated with surface warming, changes in circulation, and biological effects are likely to impact on the uptake capacity. The accumulation or storage-of the C02 in the ocean is also the major driver of ocean acidification with potential to disrupt marine ecosystems. This talk will describe the current understanding of the ocean C02 uptake and storage and a new international research strategy to detect how the ocean uptake and storage will evolve on interannual through decadal scales. Understanding the ocean response to increasing atmospheric C02 will be a key element in managing future C02 increases and establishing

  19. Effecting dietary change.

    Science.gov (United States)

    Adamson, Ashley J; Mathers, John C

    2004-11-01

    A world epidemic of diet-related chronic disease is currently being faced. In the UK incidence of obesity alone has tripled in the last 20 years and this trend is predicted to continue. Consensus exists for the urgent need for a change in diet and other lifestyle factors and for the direction and targets for this change. The evidence for how this change can be achieved is less certain. It has been established that disease processes begin in childhood. Recent evidence indicates that dietary habits too are established in childhood but that these habits are amenable to change. While establishing a healthy lifestyle in childhood is paramount, interventions have the potential to promote positive change throughout the life course. Success in reversing current trends in diet-related disease will depend on commitment from legislators, health professionals, industry and individuals, and this collaboration must seek to address not only the food choices of the individual but also the environment that influences such choices. Recent public health policy development in England, if fully supported and implemented, is a positive move towards this goal. Evidence for effective strategies to promote dietary change at the individual level is emerging and three reviews of this evidence are discussed. In addition, three recent dietary intervention studies, in three different settings and with different methods and aims, are presented to illustrate methods of effecting dietary change. Further work is required on what factors influence the eating behaviour and physical activity of individuals. There is a need for further theory-based research on which to develop more effective strategies to enable individuals to adopt healthier lifestyles.

  20. From chemolithoautotrophs to electrolithoautotrophs: CO2 fixation by Fe(II)-oxidizing bacteria coupled with direct uptake of electrons from solid electron sources.

    Science.gov (United States)

    Ishii, Takumi; Kawaichi, Satoshi; Nakagawa, Hirotaka; Hashimoto, Kazuhito; Nakamura, Ryuhei

    2015-01-01

    At deep-sea vent systems, hydrothermal emissions rich in reductive chemicals replace solar energy as fuels to support microbial carbon assimilation. Until recently, all the microbial components at vent systems have been assumed to be fostered by the primary production of chemolithoautotrophs; however, both the laboratory and on-site studies demonstrated electrical current generation at vent systems and have suggested that a portion of microbial carbon assimilation is stimulated by the direct uptake of electrons from electrically conductive minerals. Here we show that chemolithoautotrophic Fe(II)-oxidizing bacterium, Acidithiobacillus ferrooxidans, switches the electron source for carbon assimilation from diffusible Fe(2+) ions to an electrode under the condition that electrical current is the only source of energy and electrons. Site-specific marking of a cytochrome aa3 complex (aa3 complex) and a cytochrome bc1 complex (bc1 complex) in viable cells demonstrated that the electrons taken directly from an electrode are used for O2 reduction via a down-hill pathway, which generates proton motive force that is used for pushing the electrons to NAD(+) through a bc1 complex. Activation of carbon dioxide fixation by a direct electron uptake was also confirmed by the clear potential dependency of cell growth. These results reveal a previously unknown bioenergetic versatility of Fe(II)-oxidizing bacteria to use solid electron sources and will help with understanding carbon assimilation of microbial components living in electronically conductive chimney habitats.

  1. Dietary treatment of obesity

    Directory of Open Access Journals (Sweden)

    Ana Maria Pita Lottenberg

    2006-03-01

    Full Text Available The fast global increased prevalence of obesity has been classifiedas an epidemics by the World Health Organization. The etiology ofobesity is very complex and involves genetic and environmentalfactors. One of the main factors that trigger obesity is sedentarylife, as well as the great availability of fat-rich foods that present ahigh energy density. According to the NHANES II, although thepopulation has decreased the ingestion of fat, the total consumptionof food has increased. The main factors that influence in choice offood are flavor, followed by cost, convenience and, finally, itsnutritional value. The dietary treatment of obesity should haverealistic goals concerning weight loss rate and amount. It issuggested to prescribe a balanced low-calorie diet, emphasizingmostly the quality of foods by using the food pyramid. Therefore,patients may learn the appropriate criteria to select food and makehealthy choices. The dietary treatment of obesity also includesthe use of behavioral techniques directed at dietary education,thus resulting in choice of healthy foods with adequate energyvalue.

  2. Natural Dietary Phytosterols.

    Science.gov (United States)

    Racette, Susan B; Lin, Xiaobo; Ma, Lina; Ostlund, Richard E

    2015-01-01

    Most clinical phytosterol studies are performed by adding purified supplements to smaller phytosterol amounts present in the natural diet. However, natural dietary phytosterols themselves may also have important effects on cholesterol metabolism. Epidemiological work using food frequency questionnaires to estimate dietary intake suggest that extremes of normal consumption may be associated with 3-14% changes in LDL cholesterol. Standardized food databases do not have enough phytosterol values to allow calculation of phytosterol intake for individuals outside of specialized studies. Natural diets contain phytosterol amounts ranging from less than 60 mg/2000 kcal to over 500 mg/2000 kcal. Physiological studies in which whole body cholesterol metabolism is investigated show large effects of natural dietary phytosterols on cholesterol absorption efficiency, cholesterol biosynthesis and cholesterol excretion which exceed the magnitude of changes in LDL cholesterol. The dual effects of natural phytosterols on both LDL-C and whole body cholesterol metabolism need to be considered in relating them to potential protection from coronary heart disease risk.

  3. Dietary methanol and autism.

    Science.gov (United States)

    Walton, Ralph G; Monte, Woodrow C

    2015-10-01

    The authors sought to establish whether maternal dietary methanol during pregnancy was a factor in the etiology of autism spectrum disorders. A seven item questionnaire was given to women who had given birth to at least one child after 1984. The subjects were solicited from a large primary care practice and several internet sites and separated into two groups - mothers who had given birth to a child with autism and those who had not. Average weekly methanol consumption was calculated based on questionnaire responses. 550 questionnaires were completed by women who gave birth to a non-autistic child. On average these women consumed 66.71mg. of methanol weekly. 161 questionnaires were completed by women who had given birth to an autistic child. The average estimated weekly methanol consumption for this group was 142.31mg. Based on the results of the Wilcoxon rank sum-test, we see a significant difference between the reported methanol consumption rates of the two groups. This study suggests that women who have given birth to an autistic child are likely to have had higher intake of dietary sources of methanol than women who have not. Further investigation of a possible link of dietary methanol to autism is clearly warranted. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

  4. FDG uptake in the stomach

    International Nuclear Information System (INIS)

    Yun, M. J.; Cho, H. J.; Cho, E. H.; Kim, T. S.; Kang, W. J.; Lee, J. D.

    2007-01-01

    This study was performed to evaluate histopathologic features of advanced gastric cancer (AGC) to predict FDG uptake on PET. 153 patients(102 men; mean age, 55 y) were diagnosed with AGC by surgery were included in this study. PET images were evaluated by visual and semi-quantitative analysis of FDG uptake in primary tumors. Primary tumors size were measured and divided according to Borrmann classification. Tumor histology was classified under WHO classification, depth of invasion and Iymphovascular invasion. The tumors were also grouped by high cellular(cellularity = 50%) and low cellular group (<50%). Microscopic growth type was based on Lauren classification. Stromal fibrosis degree and inflammatory cell infiltration amount was graded as low(none∼mild), or high(moderate∼severe). Lymph node metastases was assessed in all patients. Statistical analyses were performed to evaluate differences in SUV as to histopathologic factors. Of the 153 patients, 21 patients(14%) had primary tumor invisible on initial whole body images. After water ingestion, the tumors became visible in 15 of the 21 patients due to disappearance of physiologic stomach uptake. Polypoid or ulcerofungating tumors, high cellularity, intestinal growth pattern, and larger tumors significantly predicted increased tumor SUVs. Well or moderately differentiated adenocarcinoma tended to show high cellularity and intestinal growth pattern. Poorly differentiated adenocarcinoma had diverse spectrum of histopathology. Signet ring cell carcinomas were mostly ulceroinfiltrative or diffusely infiltrative in macroscopic type and diffuse in microscopic tumor growth. Mucinous adenocarcinomas were mostly low in cellularity. FDG uptake patterns are useful in representing histopathologic characteristics of the entire tumor in gastric cancers. The degree of FDG uptake depends on tumor size, macroscopic type, cellularity, and microscopic growth pattern and it shows no association with well known important prognostic

  5. Determinants of dietary supplement use - healthy individuals use dietary supplements

    DEFF Research Database (Denmark)

    Kofoed, Christina L F; Christensen, Jane; Dragsted, Lars Ove

    2015-01-01

    influence the use of dietary supplements. Only few studies investigating the use of dietary supplements have been conducted in the Danish population. The present cross-sectional study is based on 54 948 Danes, aged 50-64 years, who completed self-administrated questionnaires on diet, dietary supplements...... and lifestyle between 1993 and 1997. A health index including smoking, physical activity, alcohol and diet, and a metabolic risk index including waist circumference, urinary glucose and measured hypertension were constructed. Logistic regression was used to investigate these determinants in relation...... to the intake of dietary supplements. We found that 71 % of the participants were dietary supplement users; female sex, older age groups and higher educated participants were more likely to be users of any dietary supplements. One additional point in the health index was associated with 19, 16 and 9 % higher...

  6. Genetic variations in the dynamics of dry matter accumulation, nitrogen assimilation and translocation in new T. aestivum L. varieties. II. Nitrogen assimilation and translocation in relation to grain yield and protein content

    International Nuclear Information System (INIS)

    Nankova, M.; Kostov, K.; Penchev, E.

    1999-01-01

    The study was carried out under greenhouse and field conditions and showed considerable genotype differences between the vrs. Enola, Karat, Svilena and Pliska (T. aestivum L.) with regard to N assimilation during heading, which played an important role in grain yield formation (0.852). Grain yield depends considerably on N translocation (NT) in the period heading-full maturity (0.864) and on its part affects the intensity of N uptake in grain during grain filling-full maturity. In both experiments cv. Svilena demonstrated high NR from the leaves, which was the reason for more than 52 % of N in grain. In the field experiment cv. Svilena confirmed this tendency, the NR being highest in the 2-3 leaf stage, followed by the flag leaf and the down leaves. The intensity of N uptake in grain during grain filling-full maturity was highest in the vrs. Enola and Karat. This intensity was in strong correlation with NA during heading, and with NT in V m during heading-full maturity. It also affected to a high degree the protein content in grain, as well as grain yield. In both experiments a strong negative correlation was established between the NHI/GHI ratio, and grain yield and nitrogen assimilation during heading; a positive correlation was determined with grain NHI. Under the conditions of increasing N dressing, the vrs. Enola, Karat, and Svilena had higher N expense for formation of a production unit, 63 up to 91 % of the N being used for formation of grain with high protein content. Protein yield correlated strongly not only with protein in grain, but also with the intensity of uptake in grain during grain filling - full maturity. The highest protein yield was registered in cv. Karat. By their N expense for production of 100 kg protein, the new varieties did not differ from the standard variety Pliska. The results from the study showed a higher genetic potential of the agrochemically promising varieties Karat, Enola and Svilena than the standard variety Pliska. Refs. 10

  7. Organic matter assimilation and selective feeding by holothurians in the deep sea: some observations and comments

    Science.gov (United States)

    Ginger, Michael L.; Billett, David S. M.; Mackenzie, Karen L.; Konstandinos Kiriakoulakis; Neto, Renato R.; K. Boardman, Daniel; Santos, Vera L. C. S.; Horsfall, Ian M.; A. Wolff, George

    The selective feeding behaviour and assimilation efficiencies of deep-sea holothurians were investigated in order to assess their impact on carbon and nitrogen remineralisation on the Porcupine Abyssal Plain (PAP; ˜ 49°N 16°W, ˜ 4850 m water depth). Unfortunately, reliable determination of organic matter in the gut contents of the organisms proved to be difficult, because of the lysis of cells associated with the death of the animals on recovery. This was expressed in high levels of free fatty acids in the gut contents of Oneirophanta mutabilis, which we ascribe to unregulated lipolysis of phospholipids and triacylglycerides. It was not possible to estimate accurately the contribution that such material made to the gut contents, but based on the distributions of sterols in the gut sediments, it is likely to have been substantial. Therefore, all assimilation efficiencies calculated for holothurians in the deep sea should be treated with caution. Fortuitously, a bloom of holothurians that feed on the sediment surface (namely Amperima rosea and Ellipinion molle) during the period of study provided an opportunity indirectly to assess the impact of megafauna on organic matter cycling at the PAP. Observations suggest that the depletion of phytosterols from the surficial sediments between July and October 1997 resulted from the selective uptake of fresh phytodetritus by the blooming species. Deep-sea holothurians do not biosynthesise sterols de novo and an estimate of the sterol required by the increased population of A. rosea and E. molle is equivalent to the sterol flux to the seafloor during the spring/summer of 1997. The implications are dramatic. Firstly, these and other megafauna apparently turned over and selectively removed phytosterols from the freshly arrived phytodetritus and the surficial sediment (0-5 mm) at the PAP in less than four months. Secondly, their action impacted the food resource available to other organisms. Finally, as phytosterols are

  8. Docosahexaenoic acid affects arachidonic acid uptake in megakaryocytes

    International Nuclear Information System (INIS)

    Schick, P.K.; Webster, P.

    1987-01-01

    Dietary omega 3 fatty acids are thought to prevent atherosclerosis, possibly by modifying platelet (PT) function and arachidonic acid (20:4) metabolism. The study was designed to determine whether omega 3 fatty acids primarily affect 20:4 metabolism in megakaryocytes (MK), bone marrow precursors of PT, rather than in circulating PT. MK and PT were isolated from guinea pigs and incubated with [ 14 C]-20:4 (0.13uM). Docosahexaenoic acid (22:6) is a major omega 3 fatty acid in marine oils. The incubation of MK with 22:6 (0.1, 1.0 uM) resulted in the decrease of incorporation of [ 14 C]-20:4 into total MK phospholipids, 16% and 41% respectively. Alpha-linolenic acid (18:3), a major omega 3 fatty acid present in American diets, had no effect on 20:4 uptake in MK. 22:6 primarily affected the uptake of [ 14 C]-20:4 into phosphatidylethanolamine (PE) and phosphatidylserine (PS) in MK. In MK, 22:6 (0.1, 1.0 uM) caused a decrease of incorporation of [ 14 C]-20:4 into PE, 21% and 55% respectively; a decrease into PS, 16% and 48% respectively; but only a decrease of 4% and 18%, respectively, into phosphatidylcholine; and a decrease of 3% and 21% into phosphatidylinositol 22:6 (3.0 uM) had no effect on the uptake of AA into PT phospholipids. The study shows that 22:6 has a selective effect on AA uptake in MK and that the acylation or transacylation of PE and PS are primarily affected. 22:6 and other marine omega 3 fatty acids appear to primarily affect megakaryocytes which may result in the production of platelets with abnormal content and compartmentalization of AA

  9. Assimilation of NUCAPS Retrieved Profiles in GSI for Unique Forecasting Applications

    Science.gov (United States)

    Berndt, Emily Beth; Zavodsky, Bradley; Srikishen, Jayanthi; Blankenship, Clay

    2015-01-01

    Hyperspectral IR profiles can be assimilated in GSI as a separate observation other than radiosondes with only changes to tables in the fix directory. Assimilation of profiles does produce changes to analysis fields and evidenced by: Innovations larger than +/-2.0 K are present and represent where individual profiles impact the final temperature analysis.The updated temperature analysis is colder behind the cold front and warmer in the warm sector. The updated moisture analysis is modified more in the low levels and tends to be drier than the original model background Analysis of model output shows: Differences relative to 13-km RAP analyses are smaller when profiles are assimilated with NUCAPS errors. CAPE is under-forecasted when assimilating NUCAPS profiles, which could be problematic for severe weather forecasting Refining the assimilation technique to incorporate an error covariance matrix and creating a separate GSI module to assimilate satellite profiles may improve results.

  10. The coupling of high-speed high resolution experimental data and LES through data assimilation techniques

    Science.gov (United States)

    Harris, S.; Labahn, J. W.; Frank, J. H.; Ihme, M.

    2017-11-01

    Data assimilation techniques can be integrated with time-resolved numerical simulations to improve predictions of transient phenomena. In this study, optimal interpolation and nudging are employed for assimilating high-speed high-resolution measurements obtained for an inert jet into high-fidelity large-eddy simulations. This experimental data set was chosen as it provides both high spacial and temporal resolution for the three-component velocity field in the shear layer of the jet. Our first objective is to investigate the impact that data assimilation has on the resulting flow field for this inert jet. This is accomplished by determining the region influenced by the data assimilation and corresponding effect on the instantaneous flow structures. The second objective is to determine optimal weightings for two data assimilation techniques. The third objective is to investigate how the frequency at which the data is assimilated affects the overall predictions. Graduate Research Assistant, Department of Mechanical Engineering.

  11. DARLA: Data Assimilation and Remote Sensing for Littoral Applications

    Science.gov (United States)

    Jessup, A.; Holman, R. A.; Chickadel, C.; Elgar, S.; Farquharson, G.; Haller, M. C.; Kurapov, A. L.; Özkan-Haller, H. T.; Raubenheimer, B.; Thomson, J. M.

    2012-12-01

    DARLA is 5-year collaborative project that couples state-of-the-art remote sensing and in situ measurements with advanced data assimilation (DA) modeling to (a) evaluate and improve remote sensing retrieval algorithms for environmental parameters, (b) determine the extent to which remote sensing data can be used in place of in situ data in models, and (c) infer bathymetry for littoral environments by combining remotely-sensed parameters and data assimilation models. The project uses microwave, electro-optical, and infrared techniques to characterize the littoral ocean with a focus on wave and current parameters required for DA modeling. In conjunction with the RIVET (River and Inlets) Project, extensive in situ measurements provide ground truth for both the remote sensing retrieval algorithms and the DA modeling. Our goal is to use remote sensing to constrain data assimilation models of wave and circulation dynamics in a tidal inlet and surrounding beaches. We seek to improve environmental parameter estimation via remote sensing fusion, determine the success of using remote sensing data to drive DA models, and produce a dynamically consistent representation of the wave, circulation, and bathymetry fields in complex environments. The objectives are to test the following three hypotheses: 1. Environmental parameter estimation using remote sensing techniques can be significantly improved by fusion of multiple sensor products. 2. Data assimilation models can be adequately constrained (i.e., forced or guided) with environmental parameters derived from remote sensing measurements. 3. Bathymetry on open beaches, river mouths, and at tidal inlets can be inferred from a combination of remotely-sensed parameters and data assimilation models. Our approach is to conduct a series of field experiments combining remote sensing and in situ measurements to investigate signature physics and to gather data for developing and testing DA models. A preliminary experiment conducted at

  12. [Al3+ Absorption and Assimilation by Four Ectomycorrhizal Fungi].

    Science.gov (United States)

    Wang, Ming-xia; Yuan, Ling; Huang, Jian-guo; Zhou, Zhi-feng

    2015-09-01

    The present experiment was carried out in order to know the resistance mechanism of the ectomycorrhizal (ECM) fungi under Al stress, to establish the theoretical foundation to alleviate the Al toxicity of trees, to guide the selection of Al-resisted ECM fungi and preserve forest health. The absorption and assimilation of Al3+ by four ECM fungi [Pisolithus tinctorius (Pt 715), Suillus luteus (Sl 08 and Sl 14), Gyroporus cyanescens (Gc 99)], which were isolated from different forest soils, were investigated in pure culture in liquid media. The growths of Pt 715 and Sl 08 were less affected by Al3+, but growths of S114 and Gc 99 were obviously inhibited by Al3+. With the increasing of Al3+ concentration in culture, the absorption and assimilation of Al3+ by four ECM fungi increased. It indicated that the concentration of Al3+ in environments might be the primary factor determining the Al3+ content in the cell of each tested fungi. Amounts of Al3+ absorbed (in total or calculated in unit hyphae) by the Al3+ tolerant strains (Pt 715 and Sl 08) were significantly lower than those by the Al3+ sensitive strains (S1 14 and Gc 99), which illustrated that reducing the absorption of Al3+ under Al3+ stress environment might be an effective approach to alleviate the Al3+ poison for these Al3+ tolerant strains. Furthermore, Al3+ stress could stimulate the ECM fungi to assimilate more N, P, and K, which might indicate that increasing requirement of the nutrients also could be helpful for ECM fungi to fight against the harmful effects caused by Al3+ stress.

  13. Data-Driven Model Uncertainty Estimation in Hydrologic Data Assimilation

    Science.gov (United States)

    Pathiraja, S.; Moradkhani, H.; Marshall, L.; Sharma, A.; Geenens, G.

    2018-02-01

    The increasing availability of earth observations necessitates mathematical methods to optimally combine such data with hydrologic models. Several algorithms exist for such purposes, under the umbrella of data assimilation (DA). However, DA methods are often applied in a suboptimal fashion for complex real-world problems, due largely to several practical implementation issues. One such issue is error characterization, which is known to be critical for a successful assimilation. Mischaracterized errors lead to suboptimal forecasts, and in the worst case, to degraded estimates even compared to the no assimilation case. Model uncertainty characterization has received little attention relative to other aspects of DA science. Traditional methods rely on subjective, ad hoc tuning factors or parametric distribution assumptions that may not always be applicable. We propose a novel data-driven approach (named SDMU) to model uncertainty characterization for DA studies where (1) the system states are partially observed and (2) minimal prior knowledge of the model error processes is available, except that the errors display state dependence. It includes an approach for estimating the uncertainty in hidden model states, with the end goal of improving predictions of observed variables. The SDMU is therefore suited to DA studies where the observed variables are of primary interest. Its efficacy is demonstrated through a synthetic case study with low-dimensional chaotic dynamics and a real hydrologic experiment for one-day-ahead streamflow forecasting. In both experiments, the proposed method leads to substantial improvements in the hidden states and observed system outputs over a standard method involving perturbation with Gaussian noise.

  14. Hydrologic Remote Sensing and Land Surface Data Assimilation

    Directory of Open Access Journals (Sweden)

    Hamid Moradkhani

    2008-05-01

    Full Text Available Accurate, reliable and skillful forecasting of key environmental variables such as soil moisture and snow are of paramount importance due to their strong influence on many water resources applications including flood control, agricultural production and effective water resources management which collectively control the behavior of the climate system. Soil moisture is a key state variable in land surface–atmosphere interactions affecting surface energy fluxes, runoff and the radiation balance. Snow processes also have a large influence on land-atmosphere energy exchanges due to snow high albedo, low thermal conductivity and considerable spatial and temporal variability resulting in the dramatic change on surface and ground temperature. Measurement of these two variables is possible through variety of methods using ground-based and remote sensing procedures. Remote sensing, however, holds great promise for soil moisture and snow measurements which have considerable spatial and temporal variability. Merging these measurements with hydrologic model outputs in a systematic and effective way results in an improvement of land surface model prediction. Data Assimilation provides a mechanism to combine these two sources of estimation. Much success has been attained in recent years in using data from passive microwave sensors and assimilating them into the models. This paper provides an overview of the remote sensing measurement techniques for soil moisture and snow data and describes the advances in data assimilation techniques through the ensemble filtering, mainly Ensemble Kalman filter (EnKF and Particle filter (PF, for improving the model prediction and reducing the uncertainties involved in prediction process. It is believed that PF provides a complete representation of the probability distribution of state variables of interests (according to sequential Bayes law and could be a strong alternative to EnKF which is subject to some

  15. Nonlinear error dynamics for cycled data assimilation methods

    International Nuclear Information System (INIS)

    Moodey, Alexander J F; Lawless, Amos S; Potthast, Roland W E; Van Leeuwen, Peter Jan

    2013-01-01

    We investigate the error dynamics for cycled data assimilation systems, such that the inverse problem of state determination is solved at t k , k = 1, 2, 3, …, with a first guess given by the state propagated via a dynamical system model M k from time t k−1 to time t k . In particular, for nonlinear dynamical systems M k that are Lipschitz continuous with respect to their initial states, we provide deterministic estimates for the development of the error ‖e k ‖ ≔ ‖x (a) k − x (t) k ‖ between the estimated state x (a) and the true state x (t) over time. Clearly, observation error of size δ > 0 leads to an estimation error in every assimilation step. These errors can accumulate, if they are not (a) controlled in the reconstruction and (b) damped by the dynamical system M k under consideration. A data assimilation method is called stable, if the error in the estimate is bounded in time by some constant C. The key task of this work is to provide estimates for the error ‖e k ‖, depending on the size δ of the observation error, the reconstruction operator R α , the observation operator H and the Lipschitz constants K (1) and K (2) on the lower and higher modes of M k controlling the damping behaviour of the dynamics. We show that systems can be stabilized by choosing α sufficiently small, but the bound C will then depend on the data error δ in the form c‖R α ‖δ with some constant c. Since ‖R α ‖ → ∞ for α → 0, the constant might be large. Numerical examples for this behaviour in the nonlinear case are provided using a (low-dimensional) Lorenz ‘63 system. (paper)

  16. Hydrologic Remote Sensing and Land Surface Data Assimilation.

    Science.gov (United States)

    Moradkhani, Hamid

    2008-05-06

    Accurate, reliable and skillful forecasting of key environmental variables such as soil moisture and snow are of paramount importance due to their strong influence on many water resources applications including flood control, agricultural production and effective water resources management which collectively control the behavior of the climate system. Soil moisture is a key state variable in land surface-atmosphere interactions affecting surface energy fluxes, runoff and the radiation balance. Snow processes also have a large influence on land-atmosphere energy exchanges due to snow high albedo, low thermal conductivity and considerable spatial and temporal variability resulting in the dramatic change on surface and ground temperature. Measurement of these two variables is possible through variety of methods using ground-based and remote sensing procedures. Remote sensing, however, holds great promise for soil moisture and snow measurements which have considerable spatial and temporal variability. Merging these measurements with hydrologic model outputs in a systematic and effective way results in an improvement of land surface model prediction. Data Assimilation provides a mechanism to combine these two sources of estimation. Much success has been attained in recent years in using data from passive microwave sensors and assimilating them into the models. This paper provides an overview of the remote sensing measurement techniques for soil moisture and snow data and describes the advances in data assimilation techniques through the ensemble filtering, mainly Ensemble Kalman filter (EnKF) and Particle filter (PF), for improving the model prediction and reducing the uncertainties involved in prediction process. It is believed that PF provides a complete representation of the probability distribution of state variables of interests (according to sequential Bayes law) and could be a strong alternative to EnKF which is subject to some limitations including the linear

  17. Ecological Assimilation of Land and Climate Observations - the EALCO model

    Science.gov (United States)

    Wang, S.; Zhang, Y.; Trishchenko, A.

    2004-05-01

    Ecosystems are intrinsically dynamic and interact with climate at a highly integrated level. Climate variables are the main driving factors in controlling the ecosystem physical, physiological, and biogeochemical processes including energy balance, water balance, photosynthesis, respiration, and nutrient cycling. On the other hand, ecosystems function as an integrity and feedback on the climate system through their control on surface radiation balance, energy partitioning, and greenhouse gases exchange. To improve our capability in climate change impact assessment, a comprehensive ecosystem model is required to address the many interactions between climate change and ecosystems. In addition, different ecosystems can have very different responses to the climate change and its variation. To provide more scientific support for ecosystem impact assessment at national scale, it is imperative that ecosystem models have the capability of assimilating the large scale geospatial information including satellite observations, GIS datasets, and climate model outputs or reanalysis. The EALCO model (Ecological Assimilation of Land and Climate Observations) is developed for such purposes. EALCO includes the comprehensive interactions among ecosystem processes and climate, and assimilates a variety of remote sensing products and GIS database. It provides both national and local scale model outputs for ecosystem responses to climate change including radiation and energy balances, water conditions and hydrological cycles, carbon sequestration and greenhouse gas exchange, and nutrient (N) cycling. These results form the foundation for the assessment of climate change impact on ecosystems, their services, and adaptation options. In this poster, the main algorithms for the radiation, energy, water, carbon, and nitrogen simulations were diagrammed. Sample input data layers at Canada national scale were illustrated. Model outputs including the Canada wide spatial distributions of net

  18. Europium Uptake and Partitioning in Oat (Avena sativa) Roots as studied By Laser-Induced Fluorescence Spectroscopy and Confocal Microscopy Profiling Technique

    International Nuclear Information System (INIS)

    Fellows, Robert J.; Wang, Zheming; Ainsworth, Calvin C.

    2003-01-01

    The uptake of Eu3+ by elongating oat plant roots was studied by fluorescence spectroscopy, fluorescence lifetime measurement, as well as laser excitation time-resolved confocal fluorescence profiling technique. The results of this work indicated that the initial uptake of Eu(III) by oat root was most evident within the apical meristem of the root just proximal to the root cap. Distribution of assimilated Eu(III) within the roots differentiation and elongation zone was non-uniform. Higher concentrations were observed within the vascular cylinder, specifically in the phloem and developing xylem parenchyma. Elevated levels of the metal were also observed in the root hairs of the mature root. The concentration of assimilated Eu3+ dropped sharply from the apical meristem to the differentiation and elongation zone and then gradually decreased as the distance from the root cap increased. Fluorescence spectroscopic characteristics of the assimilated Eu3+ suggested that the Eu3+ exists a s inner-sphere mononuclear complexes inside the root. This work has also demonstrated the effectiveness of a time-resolved Eu3+ fluorescence spectroscopy and confocal fluorescence profiling techniques for the in vivo, real-time study of metal[Eu3+] accumulation by a functioning intact plant root. This approach can prove valuable for basic and applied studies in plant nutrition and environmental uptake of actinide radionuclides

  19. The relative importance of water and diet for uptake and subcellular distribution of cadmium in the deposit-feeding polychaete, Capitella sp I

    DEFF Research Database (Denmark)

    Selck, Henriette; Forbes, Valery E.

    2004-01-01

    The impact of dietary and water exposure on the accumulation and distribution of cadmium (Cd) in subcellular components of the polychaete Capitella sp. I was investigated. Worms were exposed to either dissolved Cd alone ('Water-Only' treatments; WO) or diet-bound Cd alone ('Algae-bound Only......, starvation likewise influenced the distribution of protein between mitochondria and cytosol. Cutaneous uptake and accumulation of Cd from the water was related to surface area while dietary uptake was influenced by the amount of sediment passing through the gut. Irrespective of exposure route, Cd...

  20. A New Methodology for the Extension of the Impact of Data Assimilation on Ocean Wave Prediction

    Science.gov (United States)

    2008-07-01

    Assimilation method The analysis fields used were corrected by an assimilation method developed at the Norwegian Meteorological Insti- tute ( Breivik and Reistad...523–535 525 becomes equal to the solution obtained by optimal interpolation (see Bratseth 1986 and Breivik and Reistad 1994). The iterations begin with...updated accordingly. A more detailed description of the assimilation method is given in Breivik and Reistad (1994). 2.3 Kolmogorov–Zurbenko filters

  1. Variational Data Assimilative Modeling of the Gulf of Maine Circulation in Spring and Summer 2010

    OpenAIRE

    Li, Yizhen; He, Ruoying; Chen, Ke; McGillicuddy, Dennis J.

    2015-01-01

    A data assimilative ocean circulation model is used to hindcast the Gulf of Maine (GOM) circulation in spring and summer 2010. Using the recently developed incremental strong constraint 4D Variational data assimilation algorithm, the model assimilates satellite sea surface temperature and in situ temperature and salinity profiles measured by expendable bathythermograph, Argo floats, and shipboard CTD casts. Validation against independent observations shows that the model skill is significantl...

  2. Employment and Wage Assimilation of Male First-generation immigrants in Denmark

    DEFF Research Database (Denmark)

    Husted, Leif; Nielsen, Helena Skyt; Rosholm, Michael

    2001-01-01

    Labour market assimilation of Danish first generation male immigrants is analysed based on two panel data sets covering the population of immigrants and 10% of the Danish population during 1984-1995. Wages and employment probabilities are estimated jointly in a random effects model which corrects...... for unobserved cohort and individual effects and panel selectivity due to missing wage information. The results show that immigrants assimilate partially to Danes, but the assimilation process differs between refugees and non-refugees....

  3. Distribution of carbon-14 assimilated by wheat awns

    International Nuclear Information System (INIS)

    Olugbemi, L.B.

    1978-01-01

    The pattern of distribution of carbon assimilated by awns was investigated in two lines of Triticum aestivum. Single awns on basal florets of spikelets in the central part of the ear were dosed with 14 C0 2 . Five days after dosing, 99% of the carbon-14 recovered was in the spikelet bearing the awn. Of the carbon-14 exported from the treated awn 57% went to the grain of the first floret, 1% to the second, 28% to the third and 7% to the fourth. (author)

  4. Information-Based Analysis of Data Assimilation (Invited)

    Science.gov (United States)

    Nearing, G. S.; Gupta, H. V.; Crow, W. T.; Gong, W.

    2013-12-01

    Data assimilation is defined as the Bayesian conditioning of uncertain model simulations on observations for the purpose of reducing uncertainty about model states. Practical data assimilation methods make the application of Bayes' law tractable either by employing assumptions about the prior, posterior and likelihood distributions (e.g., the Kalman family of filters) or by using resampling methods (e.g., bootstrap filter). We propose to quantify the efficiency of these approximations in an OSSE setting using information theory and, in an OSSE or real-world validation setting, to measure the amount - and more importantly, the quality - of information extracted from observations during data assimilation. To analyze DA assumptions, uncertainty is quantified as the Shannon-type entropy of a discretized probability distribution. The maximum amount of information that can be extracted from observations about model states is the mutual information between states and observations, which is equal to the reduction in entropy in our estimate of the state due to Bayesian filtering. The difference between this potential and the actual reduction in entropy due to Kalman (or other type of) filtering measures the inefficiency of the filter assumptions. Residual uncertainty in DA posterior state estimates can be attributed to three sources: (i) non-injectivity of the observation operator, (ii) noise in the observations, and (iii) filter approximations. The contribution of each of these sources is measurable in an OSSE setting. The amount of information extracted from observations by data assimilation (or system identification, including parameter estimation) can also be measured by Shannon's theory. Since practical filters are approximations of Bayes' law, it is important to know whether the information that is extracted form observations by a filter is reliable. We define information as either good or bad, and propose to measure these two types of information using partial

  5. Testing the Data Assimilation Capability of the Profiler Virtual Module

    Science.gov (United States)

    2016-02-01

    plane between a given grid point and the obs point, and R is the maximum distance over which an obs has influence. In the PVM WRF, the maximum error...ensemble Kalman filter approach to data assimilation in WRF/ DART . Q.J.R Meterorol. Soc. 2012:DOI:10.1002/qj.1939. Liu C, Xiao Q, Wang B. An ensemble...Tinklepaugh K, Dobek J. NWP goes to war . . . , Preprints. Paper presented at: 22nd Conference on Weather Analysis and Forecasting/18th Conference on

  6. A THEORETICAL STUDY ON SIMPLIFIED KALMAN FILTER IN DATA ASSIMILATION

    Institute of Scientific and Technical Information of China (English)

    Ma Zhai-pu; Huang Da-ji; Zhang Ben-zhao

    2003-01-01

    In this paper, we put forward a new method to reduce the calculation amount of the gain matrix of Kalman filter in data assimilation. We rewrite the vector describing the total state variables with two vectors whose dimensions are small and thus obtain the main parts and the trivial parts of the state variables. On the basis of the rewrittten formula, we not only develop a reduced Kalman filter scheme, but also obtain the transition equations about truncation errors, with which the validity of the main parts acting for the total state variables can be evaluated quantitatively. The error transition equations thus offer an indirect testimony to the rationality of the main parts.

  7. Integrating biogeochemistry and ecology into ocean data assimilation systems

    DEFF Research Database (Denmark)

    Brasseur, Pierre; Gruber, Nicolas; Barciela, Rosa

    2009-01-01

    that are not yet considered essential, such as upper-ocean vertical fluxes that are critically important to biological activity. Further, the observing systems will need to be expanded in terms of in situ platforms (with intensified deployments of sensors for O-2 and chlorophyll, and inclusion of new sensors...... for nutrients, zooplankton, micronekton biomass, and others), satellite missions (e.g., hyperspectral instruments for ocean color, lidar systems for mixed-layer depths, and wide-swath altimeters for coastal sea level), and improved methods to assimilate these new measurements....

  8. Meteorological data assimilation for real-time emergency response

    International Nuclear Information System (INIS)

    Sugiyama, G.; Chan, S.T.

    1996-11-01

    The US Department of Energy's Atmospheric Release Advisory Capability (ARAC) provides real-time dose assessments of airborne pollutant releases. Diverse data assimilation techniques are required to meet the needs of a new generation of ARAC models and to take advantage of the rapidly expanding availability of meteorological data. We are developing a hierarchy of algorithms to provide gridded meteorological fields which can be used to drive dispersion codes or to provide initial fields for mesoscale models. Data to be processed include winds, temperature, moisture, and turbulence

  9. ASSIMILATION OF DOPPLER RADAR DATA INTO NUMERICAL WEATHER MODELS

    Energy Technology Data Exchange (ETDEWEB)

    Chiswell, S.; Buckley, R.

    2009-01-15

    During the year 2008, the United States National Weather Service (NWS) completed an eight fold increase in sampling capability for weather radars to 250 m resolution. This increase is expected to improve warning lead times by detecting small scale features sooner with increased reliability; however, current NWS operational model domains utilize grid spacing an order of magnitude larger than the radar data resolution, and therefore the added resolution of radar data is not fully exploited. The assimilation of radar reflectivity and velocity data into high resolution numerical weather model forecasts where grid spacing is comparable to the radar data resolution was investigated under a Laboratory Directed Research and Development (LDRD) 'quick hit' grant to determine the impact of improved data resolution on model predictions with specific initial proof of concept application to daily Savannah River Site operations and emergency response. Development of software to process NWS radar reflectivity and radial velocity data was undertaken for assimilation of observations into numerical models. Data values within the radar data volume undergo automated quality control (QC) analysis routines developed in support of this project to eliminate empty/missing data points, decrease anomalous propagation values, and determine error thresholds by utilizing the calculated variances among data values. The Weather Research and Forecasting model (WRF) three dimensional variational data assimilation package (WRF-3DVAR) was used to incorporate the QC'ed radar data into input and boundary conditions. The lack of observational data in the vicinity of SRS available to NWS operational models signifies an important data void where radar observations can provide significant input. These observations greatly enhance the knowledge of storm structures and the environmental conditions which influence their development. As the increase in computational power and availability has

  10. Dietary Determinants of Prostate Cancer

    National Research Council Canada - National Science Library

    Chu, Lisa W

    2005-01-01

    .... Epidemiologic studies suggest that dietary factors may be important in the etiology of PCa. The objective of our research is to determine how nutritional compounds genistein, betasitosterol (STT...

  11. Studies on the translocation and distribution characteristics of carbon assimilates in blackberry

    International Nuclear Information System (INIS)

    Wang Shuyu; Liu Hongjia

    1990-08-01

    The translocation and distribution characteristics of carbon assimilates were studied with the method of 14 CO 2 feeding. The results indicated that there were different translocation and distribution characteristics of carbon assimilates among the upper, middle and lower leaves in a shoot during annual cycle. Taking away leaves, sun-shading and drought could raise the exporting ratio of carbon assimilates in the feeding leaves and could change the distributing model of the tree. Most of the carbon assimilates were translocated to basic born branch after sun-shading and drought

  12. Study on transference of assimilate in filling summer maize using isotope 14C

    International Nuclear Information System (INIS)

    Fan Zhongxue; Wang Pu; Liang Zhenxing

    2001-01-01

    The dynamic of assimilate transference from the ear leaf to grain during effective grain filling stage was studied by 14 C tracer. The results showed that the rates of assimilate transportation out of the ear leaf and transference to grain changed very fast. The rate was very big in 4 - 6 hour just after 14 C feeding and decreased with time. The grain which accumulated 14 C-assimilate in a higher rate and got much more 14 C-assimilate in fixed time could develop into larger size

  13. Arsenic uptake in bacterial calcite

    Science.gov (United States)

    Catelani, Tiziano; Perito, Brunella; Bellucci, Francesco; Lee, Sang Soo; Fenter, Paul; Newville, Matthew; Rimondi, Valentina; Pratesi, Giovanni; Costagliola, Pilario

    2018-02-01

    Bio-mediated processes for arsenic (As) uptake in calcite were investigated by means of X-ray Diffraction (XRD) and X-ray Absorption Spectroscopy (XAS) coupled with X-ray Fluorescence measurements. The environmental bacterial strain Bacillus licheniformis BD5, sampled at the Bullicame Hot Springs (Viterbo, Central Italy), was used to synthesize calcite from As-enriched growth media. Both liquid and solid cultures were applied to simulate planktonic and biofilm community environments, respectively. Bacterial calcite samples cultured in liquid media had an As enrichment factor (Kd) 50 times higher than that from solid media. The XRD analysis revealed an elongation of the crystal lattice along the c axis (by 0.03 Å) for biogenic calcite, which likely resulted from the substitution of larger arsenate for carbonate in the crystal. The XAS data also showed a clear difference in the oxidation state of sorbed As between bacterial and abiotic calcite. Abiotic chemical processes yielded predominantly As(V) uptake whereas bacterial precipitation processes led to the uptake of both As(III) and As(V). The presence of As(III) in bacterial calcite is proposed to result from subsequent reduction of arsenate to arsenite by bacterial activities. To the best of our knowledge, this is the first experimental observation of the incorporation of As(III) in the calcite crystal lattice, revealing a critical role of biochemical processes for the As cycling in nature.

  14. Arsenic uptake in bacterial calcite

    Energy Technology Data Exchange (ETDEWEB)

    Catelani, Tiziano; Perito, Brunella; Bellucci, Francesco; Lee, Sang Soo; Fenter, Paul; Newville, Matthew G.; Rimondi, Valentina; Pratesi, Giovanni; Costagliola, Pilario

    2018-02-01

    Bio-mediated processes for arsenic (As) uptake in calcite were investigated by means of X-ray Diffraction (XRD) and Xray Absorption Spectroscopy (XAS) coupled with X-ray Fluorescence measurements. The environmental bacterial strain Bacillus licheniformis BD5, sampled at the Bullicame Hot Springs (Viterbo, Central Italy), was used to synthesize calcite from As-enriched growth media. Both liquid and solid cultures were applied to simulate planktonic and biofilm community environments, respectively. Bacterial calcite samples cultured in liquid media had an As enrichment factor (Kd) 50 times higher than that from solid media. The XRD analysis revealed an elongation of the crystal lattice along the c axis (by 0.03Å) for biogenic calcite, which likely resulted from the substitution of larger arsenate for carbonate in the crystal. The XAS data also showed a clear difference in the oxidation state of sorbed As between bacterial and abiotic calcite. Abiotic chemical processes yielded predominantly As(V) uptake whereas bacterial precipitation processes led to the uptake of both As(III) and As(V). The presence of As(III) in bacterial calcite is proposed to result from subsequent reduction of arsenate to arsenite by bacterial activities. To the best of our knowledge, this is the first experimental observation of the incorporation of As(III) in the calcite crystal lattice, revealing a critical role of biochemical processes for the As cycling in nature.

  15. Nutritional quality and ions uptake to PTNDS in soybeans.

    Science.gov (United States)

    Wang, Minjuan; Fu, Yuming; Liu, Hong

    2016-02-01

    Porous-tube nutrient delivery system (PTNDS) allows high control of the root environment and prevents plant infections in both microgravity and ground conditions. In this paper, six soybean cultivars ('ZH13', 'ZH57', 'LD10', 'HH35', 'HH43', and 'ZGDD') were evaluated in terms of yield, photosynthetic efficiency, insoluble dietary fiber and ions uptake efficiency. Besides proximal composition, the concentrations of mineral and isoflavones were monitored in the seeds. 'HH35' and 'ZH13' plants showed much higher yield and harvest index, in addition to the lower lignin content of inedible biomass. Data showed that 'HH35' had the higher photosynthetic efficiency of soybean leaves with regard to photosynthetic rate and instantaneous carboxylation efficiency, whereas chlorophyll ratio and carotenoids content were no difference with the other cultivars. Both cations and anions except NH4(+) and H2PO4(-), were accumulated excessively compared to controls, especially with anions in PTNDS. Copyright © 2015 Elsevier Ltd. All rights reserved.

  16. Plant uptake of dual-labeled organic N biased by inorganic C uptake

    DEFF Research Database (Denmark)

    Rasmussen, Jim; Sauheitl, Leopold; Eriksen, Jørgen

    2010-01-01

    glycine or CO2-3 , but found no differences in uptake rates between these C-sources. The uptake of inorganic C to the shoot tissue was higher for maize grown in full light compared to shading, which indicates a passive uptake of inorganic C with water. We conclude that uptake of inorganic C produced...

  17. National Children's Study Dietary Assessment Workshop

    Science.gov (United States)

    The National Children's Study dietary assessment workshop was an opportunity for experts in dietary assessment methodology to gather and discuss the current state of knowledge about methodologies used to assess dietary intake during pregnancy, lactation, infancy, childhood, and adolescence.

  18. Dietary Supplements: What You Need to Know

    Science.gov (United States)

    ... Food Home Food Resources for You Consumers Dietary Supplements: What You Need to Know Share Tweet Linkedin ... and nutrients you personally need. What are dietary supplements? Dietary supplements include such ingredients as vitamins, minerals, ...

  19. Accounting for the Assimilative Capacity of Water Systems in Scotland

    Directory of Open Access Journals (Sweden)

    Paula Novo

    2017-07-01

    Full Text Available A key methodological challenge in understanding the relationship between the economy and the underlying ecosystem base resides in how to account for the ecosystem’s degradation and the decline of associated ecosystem services. In this study, we use information on nutrients and metals concentrations from the Environmental Change Network (ECN database and the Scottish Environment Protection Agency (SEPA for the period 2000–2010 in order to assess the assimilation capacity of water systems. The research covers five upstream sites and 17 downstream sites in northeast Scotland. Our results highlight the relevance of considering a number of pollutants, and suggest that elements such as arsenic, lead and mercury can pose a threat to ecosystems’ sustainability and health. However, little research has been done in terms of their assimilation capacity and their impact on grey water footprint assessments. In addition, the results indicate that background conditions might be relevant when performing sustainability analysis at different spatial scales. The study also poses relevant questions in relation to land management approaches versus traditional ‘end-of-pipe’ water treatment approaches, and the definition of maximum and background concentrations. In this regard, further studies will be required to understand the trade-offs between different ecosystem services depending on how these concentrations are defined.

  20. A storm-time plasmasphere evolution study using data assimilation

    Science.gov (United States)

    Nikoukar, R.; Bust, G. S.; Bishop, R. L.; Coster, A. J.; Lemon, C.; Turner, D. L.; Roeder, J. L.

    2017-12-01

    In this work, we study the evolution of the Earth's plasmasphere during geomagnetic active periods using the Plasmasphere Data Assimilation (PDA) model. The total electron content (TEC) measurements from an extensive network of global ground-based GPS receivers as well as GPS receivers on-board Constellation Observing System for Meteorology, Ionosphere and Climate (COSMIC) satellites and Communications/Navigation Outage Forecasting System (C/NOFS) satellite are ingested into the model. Global Core Plasma model, which is an empirical plasmasphere model, is utilized as the background model. Based on the 3D-VAR optimization, the PDA assimilative model benefits from incorporation of regularization techniques to prevent non-physical altitudinal variation in density estimates due to the limited-angle observational geometry. This work focuses on the plasmapause location, plasmasphere erosion time scales and refilling rates during the main and recovery phases of geomagnetic storms as estimated from the PDA 3-dimensional global maps of electron density in the ionosphere/plasmasphere. The comparison between the PDA results with in-situ density measurements from THEMIS and Van Allen Probes, and the RCM-E first-principle model will be also presented.

  1. A Microwave Radiance Assimilation Study for a Tundra Snowpack

    Science.gov (United States)

    Kim, Edward; Durand, Michael; Margulis, Steve; England, Anthony

    2010-01-01

    Recent studies have begun exploring the assimilation of microwave radiances for the modeling and retrieval of snow properties. At a point scale, and for short durations (i week), radiance assimilation (RA) results are encouraging. However, in order to determine how practical RA might be for snow retrievals when applied over longer durations, larger spatial scales, and/or different snow types, we must expand the scope of the tests. In this paper we use coincident microwave radiance measurements and station data from a tundra site on the North Slope of Alaska. The field data are from the 3rd Radio-brightness Energy Balance Experiment (REBEX-3) carried out in 1994-95 by the University of Michigan. This dataset will provide a test of RA over months instead of one week, and for a very different type of snow than previous snow RA studies. We will address the following questions: flow well can a snowpack physical model (SM), forced with local weather, match measured conditions for a tundra snowpack?; How well can a microwave emission model, driven by the snowpack model, match measured microwave brightnesses for a tundra snowpack?; How well does RA increase or decrease the fidelity of estimates of snow depth and temperatures for a tundra snowpack?

  2. Dynamic calibration of agent-based models using data assimilation.

    Science.gov (United States)

    Ward, Jonathan A; Evans, Andrew J; Malleson, Nicolas S

    2016-04-01

    A widespread approach to investigating the dynamical behaviour of complex social systems is via agent-based models (ABMs). In this paper, we describe how such models can be dynamically calibrated using the ensemble Kalman filter (EnKF), a standard method of data assimilation. Our goal is twofold. First, we want to present the EnKF in a simple setting for the benefit of ABM practitioners who are unfamiliar with it. Second, we want to illustrate to data assimilation experts the value of using such methods in the context of ABMs of complex social systems and the new challenges these types of model present. We work towards these goals within the context of a simple question of practical value: how many people are there in Leeds (or any other major city) right now? We build a hierarchy of exemplar models that we use to demonstrate how to apply the EnKF and calibrate these using open data of footfall counts in Leeds.

  3. The evolution of menstruation: A new model for genetic assimilation

    Science.gov (United States)

    Emera, D.; Romero, R.; Wagner, G.

    2012-01-01

    Why do humans menstruate while most mammals do not? Here, we present our answer to this long-debated question, arguing that (i) menstruation occurs as a mechanistic consequence of hormone-induced differentiation of the endometrium (referred to as spontaneous decidualization, or SD); (ii) SD evolved because of maternal-fetal conflict; and (iii) SD evolved by genetic assimilation of the decidualization reaction, which is induced by the fetus in non-menstruating species. The idea that menstruation occurs as a consequence of SD has been proposed in the past, but here we present a novel hypothesis on how SD evolved. We argue that decidualization became genetically stabilized in menstruating lineages, allowing females to prepare for pregnancy without any signal from the fetus. We present three models for the evolution of SD by genetic assimilation, based on recent advances in our understanding of the mechanisms of endometrial differentiation and implantation. Testing these models will ultimately shed light on the evolutionary significance of menstruation, as well as on the etiology of human reproductive disorders like endometriosis and recurrent pregnancy loss. PMID:22057551

  4. Estimating the ecology of extinct species with paleoecological data assimilation

    Science.gov (United States)

    Raiho, A.; McLachlan, J. S.; Dietze, M.

    2017-12-01

    In order to understand long term, unobservable ecosystem processes, ecologists must use both paleoecoloigcal data and ecosystem models. Models parameterize species competitive interactions using modern data. But, modern ecological or physiological observations are not available for extinct species, making it difficult for models to conceptualize their ecology. For instance, American chestnut (Castanea dentata), who played a large role in forests of northeastern US, was decimated by disease to virtual extinction. Since chestnut's demise, defining its ecology has been controversial. Models typically assume that chestnut's ecology was very similar to oak; They parameterize chestnut like oak species. These assumptions are drawn from paleoecological data, but these data are often reported without uncertainty. Since the paleoecological data are often reported without uncertainty, paleoecological data has never been directly incorporated with ecosystem models. We developed a Bayesian statistical model to estimate fractional composition from paleoecological data with uncertainty. Then, we assimilated this data product into an ecosystem model for long term forest succession using a generalized ensemble adjustment filter to determine which species demographic parameters lead to changes in species composition over the last 2,000 years at Harvard Forest. We found that chestnut was strongly negatively correlated with white pine (Pinus strobus) and red oak (Quercus rubra) in the process covariance matrix, suggesting a strong competitive interaction that is not currently understood by models for forest succession. These findings provide support for utilizing a data assimilation framework to ecologically interpret paleoecological data or data products to learn about the ecology of extinct species.

  5. Four-Dimensional Data Assimilation Using the Adjoint Method

    Science.gov (United States)

    Bao, Jian-Wen

    The calculus of variations is used to confirm that variational four-dimensional data assimilation (FDDA) using the adjoint method can be implemented when the numerical model equations have a finite number of first-order discontinuous points. These points represent the on/off switches associated with physical processes, for which the Jacobian matrix of the model equation does not exist. Numerical evidence suggests that, in some situations when the adjoint method is used for FDDA, the temperature field retrieved using horizontal wind data is numerically not unique. A physical interpretation of this type of non-uniqueness of the retrieval is proposed in terms of energetics. The adjoint equations of a numerical model can also be used for model-parameter estimation. A general computational procedure is developed to determine the size and distribution of any internal model parameter. The procedure is then applied to a one-dimensional shallow -fluid model in the context of analysis-nudging FDDA: the weighting coefficients used by the Newtonian nudging technique are determined. The sensitivity of these nudging coefficients to the optimal objectives and constraints is investigated. Experiments of FDDA using the adjoint method are conducted using the dry version of the hydrostatic Penn State/NCAR mesoscale model (MM4) and its adjoint. The minimization procedure converges and the initialization experiment is successful. Temperature-retrieval experiments involving an assimilation of the horizontal wind are also carried out using the adjoint of MM4.

  6. Dietary Therapies for Epilepsy

    Directory of Open Access Journals (Sweden)

    Eric H Kossoff

    2013-02-01

    Full Text Available Since their introduction in 1921, high-fat, low-carbohydrate "ketogenic" diets have been used worldwide for refractory childhood epilepsy. Approximately half of the children have at least half their seizures reduced, including 15% who are seizure free. The mechanisms of action of dietary therapies are under active investigation and appear to involve mitochondria. Once perceived as a last resort, modifications to initiation and maintenance, as well as the widespread use of pre-made ketogenic formulas have allowed dietary treatment to be used earlier in the course of epilepsy. For infantile spasms (West syndrome specifically, the ketogenic diet is successful about 50% of the time as a first-line treatment. New "alternative" diets such as the modified Atkins diet were created in 2003 and can be started more easily and are less restrictive. They may have particular value for countries in Asia. Side effects include constipation, dyslipidemia, growth slowing, acidosis, and kidney stones. Additionally, neurologists are studying ketogenic diets for conditions other than epilepsy, including Alzheimer's disease, autism, and brain tumors.

  7. Cholesterol Assimilation by Lactobacillus Probiotic Bacteria: An In Vitro Investigation

    OpenAIRE

    Tomaro-Duchesneau, Catherine; Jones, Mitchell L.; Shah, Divya; Jain, Poonam; Saha, Shyamali; Prakash, Satya

    2014-01-01

    Excess cholesterol is associated with cardiovascular diseases (CVD), an important cause of mortality worldwide. Current CVD therapeutic measures, lifestyle and dietary interventions, and pharmaceutical agents for regulating cholesterol levels are inadequate. Probiotic bacteria have demonstrated potential to lower cholesterol levels by different mechanisms, including bile salt hydrolase activity, production of compounds that inhibit enzymes such as 3-hydroxy-3-methylglutaryl coenzyme A, and ch...

  8. Potential of an ensemble Kalman smoother for stratospheric chemical-dynamical data assimilation

    Directory of Open Access Journals (Sweden)

    Thomas Milewski

    2013-02-01

    Full Text Available A new stratospheric ensemble Kalman smoother (EnKS system is introduced, and the potential of assimilating posterior stratospheric observations to better constrain the whole model state at analysis time is investigated. A set of idealised perfect-model Observation System Simulation Experiments (OSSE assimilating synthetic limb-sounding temperature or ozone retrievals are performed with a chemistry–climate model. The impact during the analysis step is characterised in terms of the root mean square error reduction between the forecast state and the analysis state. The performances of (1 a fixed-lag EnKS assimilating observations spread over 48 hours and (2 an ensemble Kalman Filter (EnKF assimilating a denser network of observations are compared with a reference EnKF. The ozone assimilation with EnKS shows a significant additional reduction of analysis error of the order of 10% for dynamical and chemical variables in the extratropical upper troposphere lower stratosphere (UTLS and Polar Vortex regions when compared to the reference EnKF. This reduction has similar magnitude to the one achieved by the denser-network EnKF assimilation. Similarly, the temperature assimilation with EnKS significantly decreases the error in the UTLS for the wind variables like the denser-network EnKF assimilation. However, the temperature assimilation with EnKS has little or no significant impact on the temperature and ozone analyses, whereas the denser-network EnKF shows improvement with respect to the reference EnKF. The different analysis impacts from the assimilation of current and posterior ozone observations indicate the capacity of time-lagged background-error covariances to represent temporal interactions up to 48 hours between variables during the ensemble data assimilation analysis step, and the possibility to use posterior observations whenever additional current observations are unavailable. The possible application of the EnKS for reanalyses is

  9. Evidence for the assimilation of ancient glacier organic carbon in a proglacial stream food web

    Science.gov (United States)

    Fellman, Jason; Hood, Eran; Raymond, Peter A.; Hudson, J.H.; Bozeman, Maura; Arimitsu, Mayumi L.

    2015-01-01

    We used natural abundance δ13C, δ15N, and Δ14C to compare trophic linkages between potential carbon sources (leaf litter, epilithic biofilm, and particulate organic matter) and consumers (aquatic macroinvertebrates and fish) in a nonglacial stream and two reaches of the heavily glaciated Herbert River. We tested the hypothesis that proglacial stream food webs are sustained by organic carbon released from glacial ecosystems. Carbon sources and consumers in the nonglacial stream had carbon isotope values that ranged from -30‰ to -25‰ for δ13C and from -14‰ to 53‰ for Δ14C reflecting a food web sustained mainly on contemporary primary production. In contrast, biofilm in the two glacial stream sites was highly Δ14C-depleted (-215‰ to 175‰) relative to the nonglacial stream consistent with the assimilation of ancient glacier organic carbon. IsoSource modeling showed that in upper Herbert River, macroinvertebrates (Δ14C = -171‰ to 22‰) and juvenile salmonids (Δ14C = −102‰ to 17‰) reflected a feeding history of both biofilm (~ 56%) and leaf litter (~ 40%). We estimate that in upper Herbert River on average 36% of the carbon incorporated into consumer biomass is derived from the glacier ecosystem. Thus, 14C-depleted glacial organic carbon was likely transferred to higher trophic levels through a feeding history of bacterial uptake of dissolved organic carbon and subsequent consumption of 14C-depleted biofilm by invertebrates and ultimately fish. Our findings show that the metazoan food web is sustained in part by glacial organic carbon such that future changes in glacial runoff could influence the stability and trophic structure of proglacial aquatic ecosystems.

  10. Expression of a putative grapevine hexose transporter in tobacco alters morphogenesis and assimilate partitioning.

    Science.gov (United States)

    Leterrier, Marina; Atanassova, Rossitza; Laquitaine, Laurent; Gaillard, Cécile; Coutos-Thévenot, Pierre; Delrot, Serge

    2003-04-01

    Tobacco plants were transformed by leaf disc regeneration with the VvHT1 (Vitis vinifera hexose transporter 1) cDNA under the control of the constitutive CaMV 35S promoter in a sense or antisense orientation. Among the 20 sense plants and 10 antisense plants obtained, two sense plants showed a mutant phenotype when grown in vitro, with stunted growth and an increase in the (leaves+stem)/roots dry weight ratio. The rate of [(3)H]-glucose uptake in leaf discs from these plants was decreased to 25% of the value measured in control plants. The amount of VvHT1 transgene and of host monosaccharide transporter MST transcripts in the leaves were studied by RNA gel blot analysis. The VvHT1 transcripts were usually present, but the amount of MST transcripts was the lowest in the plants that exhibited the most marked phenotype. Although the phenotype was lost when the plants were transferred from in vitro to greenhouse conditions, it was found again in vitro in the progeny obtained by self-pollination or by back-cross. The data show that VvHT1 sense expression resulted in unidirectional post-transcriptional gene inactivation of MST in some of the transformants, with dramatic effects on growth. They provide the first example of plants modified for hexose transport by post-transcriptional gene silencing. Some of the antisense plants also showed reduced expression of MST, and decreased growth. These results indicate that, like the sucrose transporters, hexose transporters play an important role in assimilate transport and in morphogenesis.

  11. Uptake and localization of fluorescent labelled gold nanoparticles in living zebrafish (Danio rerio) using Light Sheet Microscopy

    DEFF Research Database (Denmark)

    Skjolding, Lars Michael; Asmonaite, G.; Jolk, R.

    2015-01-01

    Despite nanoparticles being used in many different products and applications, the effects and fate in the environment are still not well understood. Uptake of nanoparticles into cells has been shown in vitro and in vivo. However, it is challenging to find suitable methods to identify uptake...... and determine localization on a whole organism level. Furthermore, methods used to identify nanoparticle uptake have been associated with artefacts induced by sample preparation including staining methods for electron microscopy.  This study used Fluorescent Light Sheet Microscopy (FLSM) to determine uptake...... to the particles through the diet or the water phase in a series of separate experiments. In the dietary exposure experiments Artemia salina were exposed to 1 mg Au/L for 24h before being fed to D. rerio. For exposure through the water phase 1 mg Au/L was added directly to aquaria holding the fish and non...

  12. A variational ensemble scheme for noisy image data assimilation

    Science.gov (United States)

    Yang, Yin; Robinson, Cordelia; Heitz, Dominique; Mémin, Etienne

    2014-05-01

    Data assimilation techniques aim at recovering a system state variables trajectory denoted as X, along time from partially observed noisy measurements of the system denoted as Y. These procedures, which couple dynamics and noisy measurements of the system, fulfill indeed a twofold objective. On one hand, they provide a denoising - or reconstruction - procedure of the data through a given model framework and on the other hand, they provide estimation procedures for unknown parameters of the dynamics. A standard variational data assimilation problem can be formulated as the minimization of the following objective function with respect to the initial discrepancy, η, from the background initial guess: δ« J(η(x)) = 1∥Xb (x) - X (t ,x)∥2 + 1 tf∥H(X (t,x ))- Y (t,x)∥2dt. 2 0 0 B 2 t0 R (1) where the observation operator H links the state variable and the measurements. The cost function can be interpreted as the log likelihood function associated to the a posteriori distribution of the state given the past history of measurements and the background. In this work, we aim at studying ensemble based optimal control strategies for data assimilation. Such formulation nicely combines the ingredients of ensemble Kalman filters and variational data assimilation (4DVar). It is also formulated as the minimization of the objective function (1), but similarly to ensemble filter, it introduces in its objective function an empirical ensemble-based background-error covariance defined as: B ≡ )(Xb - )T>. (2) Thus, it works in an off-line smoothing mode rather than on the fly like sequential filters. Such resulting ensemble variational data assimilation technique corresponds to a relatively new family of methods [1,2,3]. It presents two main advantages: first, it does not require anymore to construct the adjoint of the dynamics tangent linear operator, which is a considerable advantage with respect to the method's implementation, and second, it enables the handling of a flow

  13. DNA Uptake by Transformable Bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Lacks, Sanford A.

    1999-03-31

    The various processes of DNA uptake by cells can be categorized as: viral DNA entry, conjugation, or transformation. Within each category, a variety of mechanisms have been found. However, considerable similarities occur among the different mechanisms of conjugation and, especially, transformation. All of these natural mechanisms of DNA transfer are quite elaborate and involve multiple protein components, as the case may be, of the virus, the donor cell, and the recipient cell. The mechanisms of viral infection and conjugation will be discussed mainly with respect to their relevance to transformation.

  14. DNA UPTAKE BY TRANSFORMABLE BACTERIA

    Energy Technology Data Exchange (ETDEWEB)

    LACKS,S.A.

    1999-09-07

    The various processes of DNA uptake by cells can be categorized as: viral DNA entry, conjugation, or transformation. Within each category, a variety of mechanisms have been found. However, considerable similarities occur among the different mechanisms of conjugation and, especially, transformation. All of these natural mechanisms of DNA transfer are quite elaborate and involve multiple protein components, as the case may be, of the virus, the donor cell, and the recipient cell. The mechanisms of viral infection and conjugation will be discussed mainly with respect to their relevance to transformation.

  15. Greater accordance with the Dietary Approaches to Stop Hypertension dietary pattern is associated with lower diet-related greenhouse gas production but higher dietary costs in the United Kingdom12

    Science.gov (United States)

    Monsivais, Pablo; Scarborough, Peter; Lloyd, Tina; Mizdrak, Anja; Luben, Robert; Mulligan, Angela A; Wareham, Nicholas J; Woodcock, James

    2015-01-01

    Background: The Dietary Approaches to Stop Hypertension (DASH) diet is a proven way to prevent and control hypertension and other chronic disease. Because the DASH diet emphasizes plant-based foods, including vegetables and grains, adhering to this diet might also bring about environmental benefits, including lower associated production of greenhouse gases (GHGs). Objective: The objective was to examine the interrelation between dietary accordance with the DASH diet and associated GHGs. A secondary aim was to examine the retail cost of diets by level of DASH accordance. Design: In this cross-sectional study of adults aged 39–79 y from the European Prospective Investigation into Cancer and Nutrition–Norfolk, United Kingdom cohort (n = 24,293), dietary intakes estimated from food-frequency questionnaires were analyzed for their accordance with the 8 DASH food and nutrient-based targets. Associations between DASH accordance, GHGs, and dietary costs were evaluated in regression analyses. Dietary GHGs were estimated with United Kingdom-specific data on carbon dioxide equivalents associated with commodities and foods. Dietary costs were estimated by using national food prices from a United Kingdom–based supermarket comparison website. Results: Greater accordance with the DASH dietary targets was associated with lower GHGs. Diets in the highest quintile of accordance had a GHG impact of 5.60 compared with 6.71 kg carbon dioxide equivalents/d for least-accordant diets (P dietary costs, with the mean cost of diets in the top quintile of DASH scores 18% higher than that of diets in the lowest quintile (P < 0.0001). Conclusions: Promoting wider uptake of the DASH diet in the United Kingdom may improve population health and reduce diet-related GHGs. However, to make the DASH diet more accessible, food affordability, particularly for lower income groups, will have to be addressed. PMID:25926505

  16. Greater accordance with the Dietary Approaches to Stop Hypertension dietary pattern is associated with lower diet-related greenhouse gas production but higher dietary costs in the United Kingdom.

    Science.gov (United States)

    Monsivais, Pablo; Scarborough, Peter; Lloyd, Tina; Mizdrak, Anja; Luben, Robert; Mulligan, Angela A; Wareham, Nicholas J; Woodcock, James

    2015-07-01

    The Dietary Approaches to Stop Hypertension (DASH) diet is a proven way to prevent and control hypertension and other chronic disease. Because the DASH diet emphasizes plant-based foods, including vegetables and grains, adhering to this diet might also bring about environmental benefits, including lower associated production of greenhouse gases (GHGs). The objective was to examine the interrelation between dietary accordance with the DASH diet and associated GHGs. A secondary aim was to examine the retail cost of diets by level of DASH accordance. In this cross-sectional study of adults aged 39-79 y from the European Prospective Investigation into Cancer and Nutrition-Norfolk, United Kingdom cohort (n = 24,293), dietary intakes estimated from food-frequency questionnaires were analyzed for their accordance with the 8 DASH food and nutrient-based targets. Associations between DASH accordance, GHGs, and dietary costs were evaluated in regression analyses. Dietary GHGs were estimated with United Kingdom-specific data on carbon dioxide equivalents associated with commodities and foods. Dietary costs were estimated by using national food prices from a United Kingdom-based supermarket comparison website. Greater accordance with the DASH dietary targets was associated with lower GHGs. Diets in the highest quintile of accordance had a GHG impact of 5.60 compared with 6.71 kg carbon dioxide equivalents/d for least-accordant diets (P dietary costs, with the mean cost of diets in the top quintile of DASH scores 18% higher than that of diets in the lowest quintile (P < 0.0001). Promoting wider uptake of the DASH diet in the United Kingdom may improve population health and reduce diet-related GHGs. However, to make the DASH diet more accessible, food affordability, particularly for lower income groups, will have to be addressed.

  17. Impact of Information Incongruity and Authors Group Membership on Assimilation and Accommodation

    Science.gov (United States)

    Moskaliuk, J.; Matschke, C.

    2018-01-01

    Learning is a complex process that can be differentiated into assimilation and accommodation. The Internet enables both types of learning through collaboration. There is, however, little research investigating the specific impact of social and information incongruity on assimilation and accommodation. The current research investigates how the…

  18. Potential performances of remotely sensed LAI assimilation in WOFOST model based on an OSS experiment

    NARCIS (Netherlands)

    Curnel, Y.; Wit, de A.J.W.; Duveiller, G.; Defourny, P.

    2011-01-01

    An Observing System Simulation Experiment (OSSE) has been defined to assess the potentialities of assimilating winter wheat leaf area index (LAI) estimations derived from remote sensing into the crop growth model WOFOST. Two assimilation strategies are considered: one based on Ensemble Kalman Filter

  19. Straight-line assimilation in home-leaving? A comparison of Turks, Somalis and Danes

    DEFF Research Database (Denmark)

    Nielsen, Rikke Skovgaard

    2016-01-01

    The purpose of this paper is to test the evidence for spatial assimilation and straight-line assimilation in the transition of leaving home in Denmark. Based on data from the extensive Danish registers, the paper analyses the home-leaving patterns of Danes, Turkish immigrants, Turkish descendants...

  20. A Framework for Research on E-Learning Assimilation in SMEs: A Strategic Perspective

    Science.gov (United States)

    Raymond, Louis; Uwizeyemungu, Sylvestre; Bergeron, Francois; Gauvin, Stephane

    2012-01-01

    Purpose: This study aims to propose an integrative conceptual framework of e-learning adoption and assimilation that is adapted to the specific context of small to medium-sized enterprises (SMEs). Design/methodology/approach: The literature on the state of e-learning usage in SMEs and on the IT adoption and assimilation factors that can be…

  1. Simultaneous assimilation of ozone profiles from multiple UV-VIS satellite instruments

    Science.gov (United States)

    van Peet, Jacob C. A.; van der A, Ronald J.; Kelder, Hennie M.; Levelt, Pieternel F.

    2018-02-01

    A three-dimensional global ozone distribution has been derived from assimilation of ozone profiles that were observed by satellites. By simultaneous assimilation of ozone profiles retrieved from the nadir looking satellite instruments Global Ozone Monitoring Experiment 2 (GOME-2) and Ozone Monitoring Instrument (OMI), which measure the atmosphere at different times of the day, the quality of the derived atmospheric ozone field has been improved. The assimilation is using an extended Kalman filter in which chemical transport model TM5 has been used for the forecast. The combined assimilation of both GOME-2 and OMI improves upon the assimilation results of a single sensor. The new assimilation system has been demonstrated by processing 4 years of data from 2008 to 2011. Validation of the assimilation output by comparison with sondes shows that biases vary between -5 and +10 % between the surface and 100 hPa. The biases for the combined assimilation vary between -3 and +3 % in the region between 100 and 10 hPa where GOME-2 and OMI are most sensitive. This is a strong improvement compared to direct retrievals of ozone profiles from satellite observations.

  2. Assimilation or Ethnicization: An Exploration of Inland Tibet Class Education Policy and Practice

    Science.gov (United States)

    Miaoyan, Yang; Dunzhu, Nima

    2015-01-01

    Assimilation and ethnicization are mainstream voices in current studies of ethnic relations. The former suspects that current social system arrangements are meant to assimilate minority groups into the cultural system of the mainstream ethnic group, while the latter believes that current systemic arrangements will cause minority groups to tend…

  3. Data assimilation in atmospheric chemistry models: current status and future prospects for coupled chemistry meteorology models

    OpenAIRE

    M. Bocquet; H. Elbern; H. Eskes; M. Hirtl; R. Žabkar; G. R. Carmichael; J. Flemming; A. Inness; M. Pagowski; J. L. Pérez Camaño; P. E. Saide; R. San Jose; M. Sofiev; J. Vira; A. Baklanov

    2015-01-01

    Data assimilation is used in atmospheric chemistry models to improve air quality forecasts, construct re-analyses of three-dimensional chemical (including aerosol) concentrations and perform inverse modeling of input variables or model parameters (e.g., emissions). Coupled chemistry meteorology models (CCMM) are atmospheric chemistry models that simulate meteorological processes and chemical transformations jointly. They offer the possibility to assimilate both meteorologica...

  4. The effect of acetylcholine on 14C-assimilates translocation of Isatis tinctoria L

    International Nuclear Information System (INIS)

    Yang Chongjun; Tang Feiyu; Zhang Ping; Guo Yuhai

    2004-01-01

    The effects of acetylcholine on 14 C-assimilates translocation are studied with source-channel-sink of Isatis tinctoria L. The experiments show that 0.01 mmol/L treatments of acetylcholine on the phloem, can improve the output of 14 C-assimilates in leaves indicating that acetylcholine enhances the activity of phloem transport. (authors)

  5. Data Assimilation within the Advanced Circulation (ADCIRC) Modeling Framework for Hurricane Storm Surge Forecasting

    KAUST Repository

    Butler, T.; Altaf, Muhammad; Dawson, C.; Hoteit, Ibrahim; Luo, X.; Mayo, T.

    2012-01-01

    levels, and wave heights—during these extreme events. This type of data, if available in real time, could be used in a data assimilation framework to improve hurricane storm surge forecasts. In this paper a data assimilation methodology for storm surge

  6. Air Quality Modeling Using the NASA GEOS-5 Multispecies Data Assimilation System

    Science.gov (United States)

    Keller, Christoph A.; Pawson, Steven; Wargan, Krzysztof; Weir, Brad

    2018-01-01

    The NASA Goddard Earth Observing System (GEOS) data assimilation system (DAS) has been expanded to include chemically reactive tropospheric trace gases including ozone (O3), nitrogen dioxide (NO2), and carbon monoxide (CO). This system combines model analyses from the GEOS-5 model with detailed atmospheric chemistry and observations from MLS (O3), OMI (O3 and NO2), and MOPITT (CO). We show results from a variety of assimilation test experiments, highlighting the improvements in the representation of model species concentrations by up to 50% compared to an assimilation-free control experiment. Taking into account the rapid chemical cycling of NO2 when applying the assimilation increments greatly improves assimilation skills for NO2 and provides large benefits for model concentrations near the surface. Analysis of the geospatial distribution of the assimilation increments suggest that the free-running model overestimates biomass burning emissions but underestimates lightning NOx emissions by 5-20%. We discuss the capability of the chemical data assimilation system to improve atmospheric composition forecasts through improved initial value and boundary condition inputs, particularly during air pollution events. We find that the current assimilation system meaningfully improves short-term forecasts (1-3 day). For longer-term forecasts more emphasis on updating the emissions instead of initial concentration fields is needed.

  7. An OSSE Study for Deep Argo Array using the GFDL Ensemble Coupled Data Assimilation System

    Science.gov (United States)

    Chang, You-Soon; Zhang, Shaoqing; Rosati, Anthony; Vecchi, Gabriel A.; Yang, Xiaosong

    2018-03-01

    An observing system simulation experiment (OSSE) using an ensemble coupled data assimilation system was designed to investigate the impact of deep ocean Argo profile assimilation in a biased numerical climate system. Based on the modern Argo observational array and an artificial extension to full depth, "observations" drawn from one coupled general circulation model (CM2.0) were assimilated into another model (CM2.1). Our results showed that coupled data assimilation with simultaneous atmospheric and oceanic constraints plays a significant role in preventing deep ocean drift. However, the extension of the Argo array to full depth did not significantly improve the quality of the oceanic climate estimation within the bias magnitude in the twin experiment. Even in the "identical" twin experiment for the deep Argo array from the same model (CM2.1) with the assimilation model, no significant changes were shown in the deep ocean, such as in the Atlantic meridional overturning circulation and the Antarctic bottom water cell. The small ensemble spread and corresponding weak constraints by the deep Argo profiles with medium spatial and temporal resolution may explain why the deep Argo profiles did not improve the deep ocean features in the assimilation system. Additional studies using different assimilation methods with improved spatial and temporal resolution of the deep Argo array are necessary in order to more thoroughly understand the impact of the deep Argo array on the assimilation system.

  8. Are changes in sulfate assimilation pathway needed for evolution of C4 photosynthesis?

    Directory of Open Access Journals (Sweden)

    Silke Christine Weckopp

    2015-01-01

    Full Text Available C4 photosynthesis characteristically features a cell-specific localization of enzymes involved in CO2 assimilation in bundle sheath cells or mesophyll cells. Interestingly, enzymes of sulfur assimilation are also specifically present in bundle sheath cells of maize and many other C4 species. This localization, however, could not be confirmed in C4 species of the genus Flaveria. It was, therefore, concluded that the bundle sheath localization of sulfate assimilation occurs only in C4 monocots. However, recently the sulfate assimilation pathway was found coordinately enriched in bundle sheath cells of Arabidopsis, opening new questions about the significance of such cell-specific localization of the pathway. In addition, next generation sequencing revealed expression gradients of many genes from C3 to C4 species and mathematical modelling proposed a sequence of adaptations during the evolutionary path from C3 to C4. Indeed, such gradient, with higher expression of genes for sulfate reduction in C4 species, has been observed within the genus Flaveria. These new tools provide the basis for reexamining the intriguing question of compartmentalization of sulfur assimilation. Therefore, this review summarizes the findings on spatial separation of sulfur assimilation in C4 plants and Arabidopsis, assesses the information on sulfur assimilation provided by the recent transcriptomics data and discusses their possible impact on understanding this interesting feature of plant sulfur metabolism to find out whether changes in sulfate assimilation are part of a general evolutionary trajectory towards C4 photosynthesis.

  9. Dietary acculturation among the South-Asian Surinamese population in the Netherlands: the HELIUS study.

    Science.gov (United States)

    Raza, Qaisar; Nicolaou, Mary; Snijder, Marieke B; Stronks, Karien; Seidell, Jacob C

    2017-08-01

    To test Koctürk's model of dietary change among South-Asian Surinamese in the Netherlands. The model categorizes foods into staple, complementary and accessory foods and postulates that dietary change after migration begins with accessory foods while foods associated with ethnic identity (staple foods) change at a slower rate. Cross-sectional data from the HELIUS study. Dietary intake was assessed with an FFQ. Acculturation was based on social contacts and sense of belonging and was translated into four strategies of acculturation: assimilation, integration, separation and marginalization. Other indicators of acculturation included residence duration, age at migration and migration generation status. Amsterdam, the Netherlands. Participants of Dutch (n 1456) and South-Asian Surinamese origin (n 968). Across all acculturation strategies, South-Asian Surinamese participants reported significantly higher intakes of rice (staple food) and chicken (complementary food) and significantly lower intakes of red meat and vegetables (complementary foods) and cookies and sweets (accessory food) than Dutch participants. Men, second-generation and assimilated South-Asian Surinamese were inclined towards Dutch foods such as potato, pasta and red meat. Accessory foods like fruits showed variation across acculturation strategies. Consistent with the Koctürk model, the intake of staple foods was stable among South-Asian Surinamese irrespective of acculturation strategy while the intake of accessory foods like fruit varied. Contrary to expectations, South-Asian Surinamese showed consistently high intakes of complementary foods like chicken and fish irrespective of acculturation strategy. Public health practitioners should take into consideration the complex and dynamic nature of dietary acculturation.

  10. Evaluation of Gaussian approximations for data assimilation in reservoir models

    KAUST Repository

    Iglesias, Marco A.

    2013-07-14

    The Bayesian framework is the standard approach for data assimilation in reservoir modeling. This framework involves characterizing the posterior distribution of geological parameters in terms of a given prior distribution and data from the reservoir dynamics, together with a forward model connecting the space of geological parameters to the data space. Since the posterior distribution quantifies the uncertainty in the geologic parameters of the reservoir, the characterization of the posterior is fundamental for the optimal management of reservoirs. Unfortunately, due to the large-scale highly nonlinear properties of standard reservoir models, characterizing the posterior is computationally prohibitive. Instead, more affordable ad hoc techniques, based on Gaussian approximations, are often used for characterizing the posterior distribution. Evaluating the performance of those Gaussian approximations is typically conducted by assessing their ability at reproducing the truth within the confidence interval provided by the ad hoc technique under consideration. This has the disadvantage of mixing up the approximation properties of the history matching algorithm employed with the information content of the particular observations used, making it hard to evaluate the effect of the ad hoc approximations alone. In this paper, we avoid this disadvantage by comparing the ad hoc techniques with a fully resolved state-of-the-art probing of the Bayesian posterior distribution. The ad hoc techniques whose performance we assess are based on (1) linearization around the maximum a posteriori estimate, (2) randomized maximum likelihood, and (3) ensemble Kalman filter-type methods. In order to fully resolve the posterior distribution, we implement a state-of-the art Markov chain Monte Carlo (MCMC) method that scales well with respect to the dimension of the parameter space, enabling us to study realistic forward models, in two space dimensions, at a high level of grid refinement. Our

  11. Variational data assimilation system "INM RAS - Black Sea"

    Science.gov (United States)

    Parmuzin, Eugene; Agoshkov, Valery; Assovskiy, Maksim; Giniatulin, Sergey; Zakharova, Natalia; Kuimov, Grigory; Fomin, Vladimir

    2013-04-01

    Development of Informational-Computational Systems (ICS) for Data Assimilation Procedures is one of multidisciplinary problems. To study and solve these problems one needs to apply modern results from different disciplines and recent developments in: mathematical modeling; theory of adjoint equations and optimal control; inverse problems; numerical methods theory; numerical algebra and scientific computing. The problems discussed above are studied in the Institute of Numerical Mathematics of the Russian Academy of Science (INM RAS) in ICS for Personal Computers (PC). Special problems and questions arise while effective ICS versions for PC are being developed. These problems and questions can be solved with applying modern methods of numerical mathematics and by solving "parallelism problem" using OpenMP technology and special linear algebra packages. In this work the results on the ICS development for PC-ICS "INM RAS - Black Sea" are presented. In the work the following problems and questions are discussed: practical problems that can be studied by ICS; parallelism problems and their solutions with applying of OpenMP technology and the linear algebra packages used in ICS "INM - Black Sea"; Interface of ICS. The results of ICS "INM RAS - Black Sea" testing are presented. Efficiency of technologies and methods applied are discussed. The work was supported by RFBR, grants No. 13-01-00753, 13-05-00715 and by The Ministry of education and science of Russian Federation, project 8291, project 11.519.11.1005 References: [1] V.I. Agoshkov, M.V. Assovskii, S.A. Lebedev, Numerical simulation of Black Sea hydrothermodynamics taking into account tide-forming forces. Russ. J. Numer. Anal. Math. Modelling (2012) 27, No.1, 5-31 [2] E.I. Parmuzin, V.I. Agoshkov, Numerical solution of the variational assimilation problem for sea surface temperature in the model of the Black Sea dynamics. Russ. J. Numer. Anal. Math. Modelling (2012) 27, No.1, 69-94 [3] V.B. Zalesny, N.A. Diansky, V

  12. The Effects of Chlorophyll Assimilation on Carbon Fluxes in a Global Biogeochemical Model. [Technical Report Series on Global Modeling and Data Assimilation

    Science.gov (United States)

    Koster, Randal D. (Editor); Rousseaux, Cecile Severine; Gregg, Watson W.

    2014-01-01

    In this paper, we investigated whether the assimilation of remotely-sensed chlorophyll data can improve the estimates of air-sea carbon dioxide fluxes (FCO2). Using a global, established biogeochemical model (NASA Ocean Biogeochemical Model, NOBM) for the period 2003-2010, we found that the global FCO2 values produced in the free-run and after assimilation were within -0.6 mol C m(sup -2) y(sup -1) of the observations. The effect of satellite chlorophyll assimilation was assessed in 12 major oceanographic regions. The region with the highest bias was the North Atlantic. Here the model underestimated the fluxes by 1.4 mol C m(sup -2) y(sup -1) whereas all the other regions were within 1 mol C m(sup -2) y(sup -1) of the data. The FCO2 values were not strongly impacted by the assimilation, and the uncertainty in FCO2 was not decreased, despite the decrease in the uncertainty in chlorophyll concentration. Chlorophyll concentrations were within approximately 25% of the database in 7 out of the 12 regions, and the assimilation improved the chlorophyll concentration in the regions with the highest bias by 10-20%. These results suggest that the assimilation of chlorophyll data does not considerably improve FCO2 estimates and that other components of the carbon cycle play a role that could further improve our FCO2 estimates.

  13. Assimilate unloading from maize (Zea mays L.) pedicel tissues. II. Effects of chemical agents on sugar, amino acid, and 14C-assimilate unloading

    International Nuclear Information System (INIS)

    Porter, G.A.; Knievel, D.P.; Shannon, J.C.

    1987-01-01

    Sugar, amino acid, and 14 C-assimilate release from attached maize (Zea mays L.) pedicels was studied following treatment with several chemical inhibitors. In the absence of these agents, sugar release was nearly linear over a 7-hour period. At least 13 amino acids were released with glutamine comprising over 30% of the total. Release was not affected by potassium concentration, 10-minute pretreatments with p-chloromercuribenzene sulfonic acid (PCMBS) or dithiothreitol, and low concentrations of CaCl 2 . Three hours or more exposure to PCMBS, dinitrophenol, N-ethylmaleimide, or 2,4,6-trinitrobenzene sulfonic acid strongly inhibited 14 C-assimilate, sugar, and amino acid release from the pedicel. These treatments also reduced 14 C-assimilate movement into the kernel bases. It is, therefore, likely that reduced unloading, caused by these relatively long-term exposures to chemical inhibitors, was related to reduced translocation of assimilates into treated kernels. Whether this effect is due to disruption of kernel metabolism and sieve element function or reduced assimilate unloading and subsequent accumulation of unlabeled assimilates within the pedicel tissues cannot be determined at this time

  14. Dietary Advice on Prescription: A novel approach to dietary counseling

    Directory of Open Access Journals (Sweden)

    Gunnar Johansson

    2011-05-01

    Full Text Available This article describes a novel approach to giving dietary advice, which is called “Dietary Advice on Prescription” (DAP; Matordning på Recept [MoR] in Swedish. It is the same principle as prescription on medicine and “Physical Activity on Prescription” (PAP; Fysisk aktivitet på Recept [FaR] in Swedish. The main idea is that a written prescription will strengthen the oral advice and emphasize certain aspects of the dietary recommendation. The DAP is on the brink of being tested in a planned study.

  15. Variational assimilation of streamflow into operational distributed hydrologic models: effect of spatiotemporal adjustment scale

    Science.gov (United States)

    Lee, H.; Seo, D.-J.; Liu, Y.; Koren, V.; McKee, P.; Corby, R.

    2012-01-01

    State updating of distributed rainfall-runoff models via streamflow assimilation is subject to overfitting because large dimensionality of the state space of the model may render the assimilation problem seriously under-determined. To examine the issue in the context of operational hydrology, we carry out a set of real-world experiments in which streamflow data is assimilated into gridded Sacramento Soil Moisture Accounting (SAC-SMA) and kinematic-wave routing models of the US National Weather Service (NWS) Research Distributed Hydrologic Model (RDHM) with the variational data assimilation technique. Study basins include four basins in Oklahoma and five basins in Texas. To assess the sensitivity of data assimilation performance to dimensionality reduction in the control vector, we used nine different spatiotemporal adjustment scales, where state variables are adjusted in a lumped, semi-distributed, or distributed fashion and biases in precipitation and potential evaporation (PE) are adjusted hourly, 6-hourly, or kept time-invariant. For each adjustment scale, three different streamflow assimilation scenarios are explored, where streamflow observations at basin interior points, at the basin outlet, or at both interior points and the outlet are assimilated. The streamflow assimilation experiments with nine different basins show that the optimum spatiotemporal adjustment scale varies from one basin to another and may be different for streamflow analysis and prediction in all of the three streamflow assimilation scenarios. The most preferred adjustment scale for seven out of nine basins is found to be the distributed, hourly scale, despite the fact that several independent validation results at this adjustment scale indicated the occurrence of overfitting. Basins with highly correlated interior and outlet flows tend to be less sensitive to the adjustment scale and could benefit more from streamflow assimilation. In comparison to outlet flow assimilation, interior flow

  16. An assessment of the importance ofexposure routes to the uptake and internal localisation of fluorescent nanoparticles in zebrafish (Danio rerio), using light sheet microscopy

    DEFF Research Database (Denmark)

    Skjolding, Lars Michael; Ašmonaitė, G; Jølck, Rasmus Irming

    2017-01-01

    A major challenge in nanoecotoxicology is finding suitable methods to determine the uptake and localisation of nanoparticles on a whole-organism level. Some uptake methods have been associated with artefacts induced by sample preparation, including staining for electron microscopy. This study used...... light sheet microscopy (LSM) to define the uptake and localisation of fluorescently labelled nanoparticles in living organisms with minimal sample preparation. Zebrafish (Danio rerio) were exposed to fluorescent gold nanoparticles (Au NPs) and fluorescent polystyrene NPs via aqueous or dietary exposure...

  17. Response of an eddy-permitting ocean model to the assimilation of sparse in situ data

    Science.gov (United States)

    Li, Jian-Guo; Killworth, Peter D.; Smeed, David A.

    2003-04-01

    The response of an eddy-permitting ocean model to changes introduced by data assimilation is studied when the available in situ data are sparse in both space and time (typical for the majority of the ocean). Temperature and salinity (T&S) profiles from the WOCE upper ocean thermal data set were assimilated into a primitive equation ocean model over the North Atlantic, using a simple nudging scheme with a time window of about 2 days and a horizontal spatial radius of about 1°. When data are sparse the model returns to its unassimilated behavior, locally "forgetting" or rejecting the assimilation, on timescales determined by the local advection and diffusion. Increasing the spatial weighting radius effectively reduces both processes and hence lengthens the model restoring time (and with it, the impact of assimilation). Increasing the nudging factor enhances the assimilation effect but has little effect on the model restoring time.

  18. Time compression diseconomies in environmental management: the effect of assimilation on environmental performance.

    Science.gov (United States)

    Lannelongue, Gustavo; Gonzalez-Benito, Javier; Gonzalez-Benito, Oscar; Gonzalez-Zapatero, Carmen

    2015-01-01

    This research addresses the relationship between an organisation's assimilation of its environmental management system (EMS), the experience it gains through it, and its environmental performance. Assimilation here refers to the degree to which the requirements of the management standard are integrated within a plant's daily operations. Basing ourselves on the heterogeneity of organisations, we argue that assimilation and experience will inform environmental performance. Furthermore, we posit that the relationship between assimilation and environmental performance depends on experience. The attempt to obtain greater assimilation in a shorter time leads an organisation to record a poorer environmental outcome, which we shall refer to as time compression diseconomies in environmental management. We provide empirical evidence based on 154 plants pertaining to firms in Spain subject to the European Union's CO2 Emissions Trading System. Copyright © 2014 Elsevier Ltd. All rights reserved.

  19. Impact of real-time measurements for data assimilation in reservoir simulation

    Energy Technology Data Exchange (ETDEWEB)

    Schulze-Riegert, R; Krosche, M [Scandpower Petroleum Technology GmbH, Hamburg (Germany); Pajonk, O [TU Braunschweig (Germany). Inst. fuer Wissenschaftliches Rechnen; Myrland, T [Morges Teknisk-Naturvitenskapelige Univ. (NTNU), Trondheim (Germany)

    2008-10-23

    This paper gives an overview on the conceptual background of data assimilation techniques. The framework of sequential data assimilation as described for the ensemble Kalman filter implementation allows a continuous integration of new measurement data. The initial diversity of ensemble members will be critical for the assimilation process and the ability to successfully assimilate measurement data. At the same time the initial ensemble will impact the propagation of uncertainties with crucial consequences for production forecasts. Data assimilation techniques have complimentary features compared to other optimization techniques built on selection or regression schemes. Specifically, EnKF is applicable to real field cases and defines an important perspective for facilitating continuous reservoir simulation model updates in a reservoir life cycle. (orig.)

  20. MATLAB algorithm to implement soil water data assimilation with the Ensemble Kalman Filter using HYDRUS.

    Science.gov (United States)

    Valdes-Abellan, Javier; Pachepsky, Yakov; Martinez, Gonzalo

    2018-01-01

    Data assimilation is becoming a promising technique in hydrologic modelling to update not only model states but also to infer model parameters, specifically to infer soil hydraulic properties in Richard-equation-based soil water models. The Ensemble Kalman Filter method is one of the most widely employed method among the different data assimilation alternatives. In this study the complete Matlab© code used to study soil data assimilation efficiency under different soil and climatic conditions is shown. The code shows the method how data assimilation through EnKF was implemented. Richards equation was solved by the used of Hydrus-1D software which was run from Matlab. •MATLAB routines are released to be used/modified without restrictions for other researchers•Data assimilation Ensemble Kalman Filter method code.•Soil water Richard equation flow solved by Hydrus-1D.

  1. Ocean Data Assimilation in the Gulf of Mexico Using 3D VAR Approach - Preliminary Results

    Science.gov (United States)

    Paturi, S.; Garraffo, Z. D.; Cummings, J. A.; Rivin, I.; Mehra, A.; Kim, H. C.

    2016-12-01

    Approaches to ocean data assimilation vary widely, both in terms of the sophistication of the method and the observations assimilated.A three-dimensional variational (3DVAR) data assimilation system, part of the Navy Coupled Ocean Data Assimilation (NCODA) system developed at Navy Research Laboratory (NRL), is used for assimilating Sea Surface Temperature (SST) and Sea Surface Height (SSH) in the Gulf of Mexico (GoM). The NCODA 3DVAR produces simultaneous analyses of temperature, salinity, and vector velocity and uses all possible sources of ocean data observations.The Hybrid Coordinate Ocean Model (HYCOM) is used for the simulations, at 1/25o grid resolution for July 2011 period. After successful implementation of NCODA 3DVAR in the GoM, the system will be extended to the global ocean with the intent of making it operational.

  2. Improving 7-Day Forecast Skill by Assimilation of Retrieved AIRS Temperature Profiles

    Science.gov (United States)

    Susskind, Joel; Rosenberg, Bob

    2016-01-01

    We conducted a new set of Data Assimilation Experiments covering the period January 1 to February 29, 2016 using the GEOS-5 DAS. Our experiments assimilate all data used operationally by GMAO (Control) with some modifications. Significant improvement in Global and Southern Hemisphere Extra-tropical 7-day forecast skill was obtained when: We assimilated AIRS Quality Controlled temperature profiles in place of observed AIRS radiances, and also did not assimilate CrISATMS radiances, nor did we assimilate radiosonde temperature profiles or aircraft temperatures. This new methodology did not improve or degrade 7-day Northern Hemispheric Extra-tropical forecast skill. We are conducting experiments aimed at further improving of Northern Hemisphere Extra-tropical forecast skill.

  3. Ocean uptake of carbon dioxide

    International Nuclear Information System (INIS)

    Peng, Tsung-Hung; Takahashi, Taro

    1993-01-01

    Factors controlling the capacity of the ocean for taking up anthropogenic C0 2 include carbon chemistry, distribution of alkalinity, pCO 2 and total concentration of dissolved C0 2 , sea-air pCO 2 difference, gas exchange rate across the sea-air interface, biological carbon pump, ocean water circulation and mixing, and dissolution of carbonate in deep sea sediments. A general review of these processes is given and models of ocean-atmosphere system based on our understanding of these regulating processes axe used to estimate the magnitude of C0 2 uptake by the ocean. We conclude that the ocean can absorb up to 35% of the fossil fuel emission. Direct measurements show that 55% Of C0 2 from fossil fuel burning remains in the atmosphere. The remaining 10% is not accounted for by atmospheric increases and ocean uptake. In addition, it is estimated that an amount equivalent to 30% of recent annual fossil fuel emissions is released into the atmosphere as a result of deforestation and farming. To balance global carbon budget, a sizable carbon sink besides the ocean is needed. Storage of carbon in terrestrial biosphere as a result of C0 2 fertilization is a potential candidate for such missing carbon sinks

  4. Revised dietary guidelines for Koreans.

    Science.gov (United States)

    Jang, Young Ai; Lee, Haeng Shin; Kim, Bok Hee; Lee, Yoonna; Lee, Hae Jeung; Moon, Jae Jin; Kim, Cho-il

    2008-01-01

    With rapidly changing dietary environment, dietary guidelines for Koreans were revised and relevant action guides were developed. First, the Dietary Guidelines Advisory Committee was established with experts and government officials from the fields of nutrition, preventive medicine, health promotion, agriculture, education and environment. The Committee set dietary goals for Koreans aiming for a better nutrition state of all after a thorough review and analysis of recent information related to nutritional status and/or problems of Korean population, changes in food production/supply, disease pattern, health policy and agricultural policy. Then, the revised dietary guidelines were proposed to accomplish these goals in addition to 6 different sets of dietary action guides to accommodate specific nutrition and health problems of respective age groups. Subsequently, these guidelines and guides were subjected to the focus group review, consumer perception surveys, and a public hearing for general and professional comments. Lastly, the language was clarified in terms of public understanding and phraseology. The revised Dietary guidelines for Koreans are as follows: eat a variety of grains, vegetables, fruits, fish, meat, poultry and dairy products; choose salt-preserved foods less, and use less salt when you prepare foods; increase physical activity for a healthy weight, and balance what you eat with your activity; enjoy every meal, and do not skip breakfast; if you drink alcoholic beverages, do so in moderation; prepare foods properly, and order sensible amounts; enjoy our rice-based diet.

  5. Physical attractiveness, issue agreement, and assimilation effects in candidate appraisal.

    Science.gov (United States)

    Schubert, James N; Curran, Margaret Ann; Strungaru, Carmen

    2011-01-01

    This study examines the cognitive and affective factors of candidate appraisal by manipulating candidate attractiveness and levels of issue agreement with voters. Drawing upon research in evolutionary psychology and cognitive neuroscience, this analysis proposes that automatic processing of physical appearance predisposes affective disposition toward more attractive candidates, thereby influencing cognitive processing of issue information. An experimental design presented attractive and unattractive candidates who were either liberal or conservative in a mock primary election. The data show strong partial effects for appearance on vote intention, an interaction between appearance and issue agreement, and a tendency for voters to assimilate the dissimilar views of attractive candidates. We argue that physical appearance is important in primary elections when the differences in issue positions and ideology between candidates is small.

  6. Sample size reduction in groundwater surveys via sparse data assimilation

    KAUST Repository

    Hussain, Z.

    2013-04-01

    In this paper, we focus on sparse signal recovery methods for data assimilation in groundwater models. The objective of this work is to exploit the commonly understood spatial sparsity in hydrodynamic models and thereby reduce the number of measurements to image a dynamic groundwater profile. To achieve this we employ a Bayesian compressive sensing framework that lets us adaptively select the next measurement to reduce the estimation error. An extension to the Bayesian compressive sensing framework is also proposed which incorporates the additional model information to estimate system states from even lesser measurements. Instead of using cumulative imaging-like measurements, such as those used in standard compressive sensing, we use sparse binary matrices. This choice of measurements can be interpreted as randomly sampling only a small subset of dug wells at each time step, instead of sampling the entire grid. Therefore, this framework offers groundwater surveyors a significant reduction in surveying effort without compromising the quality of the survey. © 2013 IEEE.

  7. Sample size reduction in groundwater surveys via sparse data assimilation

    KAUST Repository

    Hussain, Z.; Muhammad, A.

    2013-01-01

    In this paper, we focus on sparse signal recovery methods for data assimilation in groundwater models. The objective of this work is to exploit the commonly understood spatial sparsity in hydrodynamic models and thereby reduce the number of measurements to image a dynamic groundwater profile. To achieve this we employ a Bayesian compressive sensing framework that lets us adaptively select the next measurement to reduce the estimation error. An extension to the Bayesian compressive sensing framework is also proposed which incorporates the additional model information to estimate system states from even lesser measurements. Instead of using cumulative imaging-like measurements, such as those used in standard compressive sensing, we use sparse binary matrices. This choice of measurements can be interpreted as randomly sampling only a small subset of dug wells at each time step, instead of sampling the entire grid. Therefore, this framework offers groundwater surveyors a significant reduction in surveying effort without compromising the quality of the survey. © 2013 IEEE.

  8. Kalman filter data assimilation: targeting observations and parameter estimation.

    Science.gov (United States)

    Bellsky, Thomas; Kostelich, Eric J; Mahalov, Alex

    2014-06-01

    This paper studies the effect of targeted observations on state and parameter estimates determined with Kalman filter data assimilation (DA) techniques. We first provide an analytical result demonstrating that targeting observations within the Kalman filter for a linear model can significantly reduce state estimation error as opposed to fixed or randomly located observations. We next conduct observing system simulation experiments for a chaotic model of meteorological interest, where we demonstrate that the local ensemble transform Kalman filter (LETKF) with targeted observations based on largest ensemble variance is skillful in providing more accurate state estimates than the LETKF with randomly located observations. Additionally, we find that a hybrid ensemble Kalman filter parameter estimation method accurately updates model parameters within the targeted observation context to further improve state estimation.

  9. Kalman filter data assimilation: Targeting observations and parameter estimation

    International Nuclear Information System (INIS)

    Bellsky, Thomas; Kostelich, Eric J.; Mahalov, Alex

    2014-01-01

    This paper studies the effect of targeted observations on state and parameter estimates determined with Kalman filter data assimilation (DA) techniques. We first provide an analytical result demonstrating that targeting observations within the Kalman filter for a linear model can significantly reduce state estimation error as opposed to fixed or randomly located observations. We next conduct observing system simulation experiments for a chaotic model of meteorological interest, where we demonstrate that the local ensemble transform Kalman filter (LETKF) with targeted observations based on largest ensemble variance is skillful in providing more accurate state estimates than the LETKF with randomly located observations. Additionally, we find that a hybrid ensemble Kalman filter parameter estimation method accurately updates model parameters within the targeted observation context to further improve state estimation

  10. Data assimilation in the early phase: Kalman filtering RIMPUFF

    DEFF Research Database (Denmark)

    Astrup, P.; Turcanu, C.; Puch, R.O.

    2004-01-01

    of RODOS (Realtime Online DecisiOn Support system for nuclear emergencies) – has been developed. It is built on the Kalman filtering algorithm and it assimilates 10-minute averaged gamma dose rates measured atground level stations. Since the gamma rates are non-linear functions of the state vector...... variables, the applied Kalman filter is the so-called Extended Kalman filter. In more ways the implementation is non standard: 1) the number of state vectorvariables varies with time, and 2) the state vector variables are prediction updated with 1-minute time steps but only Kalman filtered every 10 minutes......, and this based on time averaged measurements. Given reasonable conditions, i.e. a spatially densedistribution of gamma monitors and a realistic wind field, the developed ADUM module is found to be able to enhance the prediction of the gamma dose field. Based on some of the Kalman filtering parameters, another...

  11. Assimilating American Indians in James Fenimore Cooper’s Novels?

    Directory of Open Access Journals (Sweden)

    Peprník Michal

    2016-07-01

    Full Text Available The article employs critical concepts from sociology and anthropology to examine the stereotype of the Vanishing Indian and disclose its contradictory character. The article argues that in James Fenimore Cooper’s late novels from the 1840s a type of American Indian appears who can be regarded as a Vanishing Indian in many respects as he displays some slight degree of assimilation but at the same time he can be found to reveal a surprising amount of resistance to the process of vanishing and marginalization. His peculiar mode of survival and his mode of living demonstrate a certain degree of acculturation, which comes close to Gerald Vizenor’s survivance and for which I propose a term critical integration. I base my study on Susquesus (alias Trackless, Cooper’s less well-known character from The Littlepage Manuscripts, a three-book family saga.

  12. Weighted ensemble transform Kalman filter for image assimilation

    Directory of Open Access Journals (Sweden)

    Sebastien Beyou

    2013-01-01

    Full Text Available This study proposes an extension of the Weighted Ensemble Kalman filter (WEnKF proposed by Papadakis et al. (2010 for the assimilation of image observations. The main focus of this study is on a novel formulation of the Weighted filter with the Ensemble Transform Kalman filter (WETKF, incorporating directly as a measurement model a non-linear image reconstruction criterion. This technique has been compared to the original WEnKF on numerical and real world data of 2-D turbulence observed through the transport of a passive scalar. In particular, it has been applied for the reconstruction of oceanic surface current vorticity fields from sea surface temperature (SST satellite data. This latter technique enables a consistent recovery along time of oceanic surface currents and vorticity maps in presence of large missing data areas and strong noise.

  13. The Impact of AMSU-A Radiance Assimilation in the U.S. Navy's Operational Global Atmospheric Prediction System (NOGAPS)

    National Research Council Canada - National Science Library

    Baker, Nancy L; Hogan, T. F; Campbell, W. F; Pauley, R. L; Swadley, S. D

    2005-01-01

    ...) sensor suite onboard NOAA 15 and 16 for NOGAPS. The direct assimilation of AMSU-A radiances replaced the assimilation of ATOVS temperature retrievals produced by NOAA's National Environmental Satellite, Data and Information Service (NESDIS...

  14. Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions

    NARCIS (Netherlands)

    Babenhauserheide, A.; Basu, S.; Peters, W.

    2015-01-01

    Data assimilation systems allow for estimating surface fluxes of greenhouse gases from atmospheric concentration measurements. Good knowledge about fluxes is essential to understand how climate change affects ecosystems and to characterize feedback mechanisms. Based on assimilation of more than one

  15. Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions

    NARCIS (Netherlands)

    Babenhauserheide, A.; Basu, S.; Houweling, S.; Peters, W.; Butz, A.

    2015-01-01

    Data assimilation systems allow for estimating surface fluxes of greenhouse gases from atmospheric concentration measurements. Good knowledge about fluxes is essential to understand how climate change affects ecosystems and to characterize feedback mechanisms. Based on the assimilation of more than

  16. Studies on retranslocation of accumulated assimilates in 'Delaware' grapevines, (1)

    International Nuclear Information System (INIS)

    Yang, Yau-Shiang; Hori, Yutaka

    1979-01-01

    Potted Delaware grapevines were supplied with 14 CO 2 in summer or autumn, and the accumulation and retranslocation of 14 C-assimilates were investigated. At pruning time, 14 C-assimilates were distributed to the roots at higher ratio than to the trunks and canes, and this trend was more marked in the autumn feeding than the summer feeding. The respiratory consumption and retranslocation of 14 C during the growth period of new shoots were evaluated as the percentage of 14 C found in the vines just after pruning. The percentage of the respiratory consumption of 14 C was evidently higher in the autumn feeding. The retranslocation began with the bud burst, and reached maximum at the 6- to 8-leaf stages in the vines fed 14 CO 2 in autumn and at the 10-leaf stage in those fed in summer. The retranslocation in both groups ceased by the flowering stage. Such course of the retranslocation with time was recognized in radioautographs of the new shoots. The maximum percentage of the translocation to the newly developed shoots was 5.1 - 5.2 and 15.3 - 10.7 in the vines fed 14 CO 2 in summer and autumn, respectively. It was peculiar to the new shoots that nearly half of their ethanol-soluble 14 C was found in amino acids unlike the one-sided distribution to soluble carbohydrates in the trunks and roots. It was assumed that amino acids were retranslocated to the new shoots after they had been synthesized in the roots. (Kaihara, S.)

  17. Nonlinear data assimilation using synchronization in a particle filter

    Science.gov (United States)

    Rodrigues-Pinheiro, Flavia; Van Leeuwen, Peter Jan

    2017-04-01

    Current data assimilation methods still face problems in strongly nonlinear cases. A promising solution is a particle filter, which provides a representation of the model probability density function by a discrete set of particles. However, the basic particle filter does not work in high-dimensional cases. The performance can be improved by considering the proposal density freedom. A potential choice of proposal density might come from the synchronisation theory, in which one tries to synchronise the model with the true evolution of a system using one-way coupling via the observations. In practice, an extra term is added to the model equations that damps growth of instabilities on the synchronisation manifold. When only part of the system is observed synchronization can be achieved via a time embedding, similar to smoothers in data assimilation. In this work, two new ideas are tested. First, ensemble-based time embedding, similar to an ensemble smoother or 4DEnsVar is used on each particle, avoiding the need for tangent-linear models and adjoint calculations. Tests were performed using Lorenz96 model for 20, 100 and 1000-dimension systems. Results show state-averaged synchronisation errors smaller than observation errors even in partly observed systems, suggesting that the scheme is a promising tool to steer model states to the truth. Next, we combine these efficient particles using an extension of the Implicit Equal-Weights Particle Filter, a particle filter that ensures equal weights for all particles, avoiding filter degeneracy by construction. Promising results will be shown on low- and high-dimensional Lorenz96 models, and the pros and cons of these new ideas will be discussed.

  18. Interactions of waterborne and dietary cadmium on the expression of calcium transporters in the gills of rainbow trout: Influence of dietary calcium supplementation

    Energy Technology Data Exchange (ETDEWEB)

    Galvez, Fernando [Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 (United States); Department of Biology, McMaster University, Hamilton, Ontario, L8S 4K1 (Canada)], E-mail: galvezf@lsu.edu; Franklin, Natasha M. [Department of Biology, McMaster University, Hamilton, Ontario, L8S 4K1 (Canada); Tuttle, Ryan B. [Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 (United States); Wood, Chris M. [Department of Biology, McMaster University, Hamilton, Ontario, L8S 4K1 (Canada)

    2007-08-30

    Recent studies have shown that dietary Ca{sup 2+} supplementation strongly inhibits uptake of Ca{sup 2+} and Cd at the fish gill. To better understand the influence of dietary Ca{sup 2+} on branchial Ca{sup 2+} transport, we examined the expression of two trout gill calcium transporters during waterborne and dietary Cd exposure, at two different levels of dietary Ca{sup 2+}. Quantitative polymerase chain reaction (PCR) was used to monitor epithelial calcium channel (ECaC) and sodium-calcium exchange (NCX) mRNA levels following 7-28 days of exposure to these treatments. In brief, juvenile rainbow trout (Oncorhynchus mykiss) were exposed to control, 3 {mu}g/L waterborne Cd, 500 mg/kg dietary Cd, or a combined 3 {mu}g/L waterborne plus 500 mg/kg dietary Cd exposure, supplemented with either 20 mg/g or 60 mg/g dietary calcium (Ca{sup 2+}). Two-way analysis of variance was used to discern the main effects of Cd exposure and dietary Ca{sup 2+} supplementation on ECaC and NCX mRNA levels. We found that dietary Ca{sup 2+} supplementation decreased significantly ECaC mRNA expression on days 14 and 21. In comparison, NCX mRNA levels were not influenced by dietary Ca{sup 2+} supplementation, but rather were significantly inhibited in the combined waterborne and dietary Cd exposure on day 7 alone. Statistical analysis found no interactive effects between Cd exposure and dietary Ca{sup 2+} exposure at any time point, except for day 28.This study provides evidence of the importance of nutritional status on the transcriptional regulation of ion transport at the fish gill. We discuss the importance of diet and nutritional status to the development of new regulatory approaches, such as the biotic ligand model, which currently do not account for the significance of diet on metal bioavailability in aquatic organisms.

  19. Dietary Intake of Competitive Bodybuilders.

    Science.gov (United States)

    Spendlove, Jessica; Mitchell, Lachlan; Gifford, Janelle; Hackett, Daniel; Slater, Gary; Cobley, Stephen; O'Connor, Helen

    2015-07-01

    Competitive bodybuilders are well known for extreme physique traits and extremes in diet and training manipulation to optimize lean mass and achieve a low body fat. Although many of the dietary dogmas in bodybuilding lack scientific scrutiny, a number, including timing and dosing of high biological value proteins across the day, have more recently been confirmed as effective by empirical research studies. A more comprehensive understanding of the dietary intakes of bodybuilders has the potential to uncover other dietary approaches, deserving of scientific investigation, with application to the wider sporting, and potential health contexts, where manipulation of physique traits is desired. Our objective was to conduct a systematic review of dietary intake practices of competitive bodybuilders, evaluate the quality and currency of the existing literature, and identify research gaps to inform future studies. A systematic search of electronic databases was conducted from the earliest record until March 2014. The search combined permutations of the terms 'bodybuilding', 'dietary intake', and 'dietary supplement'. Included studies needed to report quantitative data (energy and macronutrients at a minimum) on habitual dietary intake of competitive bodybuilders. The 18 manuscripts meeting eligibility criteria reported on 385 participants (n = 62 women). Most studies were published in the 1980-1990s, with three published in the past 5 years. Study methodological quality was evaluated as poor. Energy intake ranged from 10 to 24 MJ/day for men and from 4 to 14 MJ/day for women. Protein intake ranged from 1.9 to 4.3 g/kg for men and from 0.8 to 2.8 g/kg for women. Intake of carbohydrate and fat was 6 months from competition) or immediate post-competition period and lowest during competition preparation (≤6 months from competition) or competition week. The most commonly reported dietary supplements were protein powders/liquids and amino acids. The studies failed to provide

  20. The effect of dietary calcium and vitamin D3 on the duodenal cadmium transport in the rat

    International Nuclear Information System (INIS)

    Moriuchi, Sachiko; Otawara, Yoko; Hosoya, Norimasa; Noda, Setsuko.

    1978-01-01

    The effect of dietary Ca and vitamin D 3 on the duodenal Cd transport was observed in the rat using everted gut sac technique in vitro, 1. Duodenal Cd transport was significantly increased in vitamin D deficient rat, however, it was not influenced by dietary Ca. The duodenal tissue binding and/or uptake of Cd from mucosal incubation medium was neither influenced by vitamin D 3 nor dietary Ca. 2. The transported Cd to serosal medium was very little compared to the Cd binding and/or uptake of duodenal tissue, suggesting two steps mechanism for intestinal Cd transport. The first step is the transfer from mucosal medium to duodenal mucosa and the second step is from duodenal mucosa to serosal medium. The second step was influenced by vitamin D. These results suggested that a significant increase in hepatic Cd accumulation of vitamin D deficient rat could be ascribed to the increase in the intestinal Cd absorption. (author)