WorldWideScience

Sample records for two-component zeroth-order regular

  1. Compact Dual-Band Zeroth-Order Resonance Antenna

    Institute of Scientific and Technical Information of China (English)

    XU He-Xiu; WANG Guang-Ming; GONG Jian-Qiang

    2012-01-01

    A novel microstrip zeroth-order resonator (ZOR) antenna and its equivalent circuit model are exploited with two zeroth-order resonances.It is constructed based on a resonant-type composite right/left handed transmission line (CRLH TL) using a Wunderlich-shaped extended complementary single split ring resonator pair (W-ECSSRRP) and a series capacitive gap.The gap either can be utilized for double negative (DNG) ZOR antenna or be removed to engineer a simplified elision-negative ZOR (ENG) antenna.For verification,a DNG ZOR antenna sample is fabricated and measured.Numerical and experimental results agree well with each other,indicating that the omnidirectional radiations occur at two frequency bands which are accounted for by two shunt branches in the circuit model.The size of the antenna is 49% more compact than its previous counterpart.The superiority of WECSSRRP over CSSRRP lies in the lower fundamental resonance of the antenna by 38.2% and the introduction of a higher zeroth-order resonance.%A novel microstrip zeroth-order resonator (ZOR) antenna and its equivalent circuit model are exploited with two zeroth-order resonances. It is constructed based on a resonant-type composite right/left handed transmission line (CRLH TV) using a Wunderlich-shaped extended complementary single split ring resonator pair (W-ECSSRRP) and a series capacitive gap. The gap either can be utilized for double negative (DNG) ZOR antenna or be removed to engineer a simplified elision-negative ZOR (ENG) antenna. For verification, a DNG ZOR antenna sample is fabricated and measured. Numerical and experimental results agree well with each other, indicating that the omnidirectional radiations occur at two frequency bands which are accounted for by two shunt branches in the circuit model. The size of the antenna is 49% more compact than its previous counterpart. The superiority of W-ECSSRRP over CSSRRP lies in the lower fundamental resonance of the antenna by 38.2% and the introduction of a

  2. Scattering of aggregated particles illuminated by a zeroth-order Bessel beam

    Science.gov (United States)

    Briard, Paul; Han, Yi Ping; Chen, Zhuyang; Cai, Xiaoshu; Wang, Jiajie

    2017-05-01

    In this paper, the scattering of aggregated particles illuminated by a zeroth-order Bessel beam is investigated using the generalized Lorenz-Mie theory (GLMT). The beam shape coefficients (BSCs) of the zeroth-order Bessel beam are computed rigorously using analytical expressions. Numerical results concerning the scattering properties of aggregated particles located on the propagation axis of the incident zeroth-order Bessel beam are presented. The influences of the half-cone angle of the Bessel beam, the radius and the refractive index of the particles on the scattering pattern are discussed.

  3. Non-magnetic simplified cylindrical cloak with suppressed zero-th order scattering

    CERN Document Server

    Yan, Wei; Qiu, Min

    2008-01-01

    A new type of simplified cloaks with matched exterior boundaries is proposed. The cloak uses non-magnetic material for the TM polarization and can function with a relatively thin thickness. It is shown that the $zero^{th}$ order scattering of such cloak is dominant among all cylindrical scattering terms. A gap is added at the cloak's inner surface to eliminate the zero-th order scattering, through the mechanism of scattering resonance. The reduction in scattering is relatively smooth, indicating that the proposed scattering reduction method has good tolerance to perturbations. Numerical simulations also confirm that the proposed structure has very low scattering.

  4. Zeroth order quantum coherences and preparation of pseudopure state in homonuclear dipolar coupling spin systems

    CERN Document Server

    Furman, G B

    2006-01-01

    Dynamics of zeroth order quantum coherences and preparation of the pseudopure states in homonuclear systems of dipolar coupling spins is closely examined. It has been shown an extreme important role of the non-diagonal part of zeroth order coherence in construction of the pseudopure state. Simulations of the preparation process of pseudopure states with the real molecular structures (a rectangular (-chloro- -nitrobenzene molecule), a chain (hydroxyapatite molecule), a ring (benzene molecule), and a double ring (cyclopentane molecule)) open the way to experimental testing of the obtained results.

  5. On the validity of localized approximation for an on-axis zeroth-order Bessel beam

    Science.gov (United States)

    Gouesbet, Gérard; Lock, J. A.; Ambrosio, L. A.; Wang, J. J.

    2017-07-01

    Localized approximation procedures are efficient ways to evaluate beam shape coefficients of laser beams, and are particularly useful when other methods are ineffective or inefficient. Several papers in the literature have reported the use of such procedures to evaluate the beam shape coefficients of Bessel beams. Examining the specific case of an on-axis zeroth-order Bessel beam, we demonstrate that localized approximation procedures are valid only for small axicon angles.

  6. Zeroth Order Phase Transition in a Holographic Superconductor with Single Impurity

    CERN Document Server

    Zeng, Hua Bi

    2014-01-01

    We studied the single normal impurity effect in superconductor by using the holographic method. When the size of impurity is much smaller compared to the host superconductor, we reproduced the Anderson theorem, which states that a conventional s-wave superconductor is robust to a normal (non-magnetic) impurity with small impurity strength or impurities with small concentration. While by increasing the size of impurity in a fixed host superconductor we also find a decrease $T_c$ of the host superconductor, the phase transition at the critical impurity strength is of zeroth order.

  7. Design of a broadband hexagonal-shaped zeroth-order resonance antenna with metamaterials

    Energy Technology Data Exchange (ETDEWEB)

    Woo, Dong Sik; Kim, Kang Wook; Choi, Hyun Chul [Kyungpook National University, Daegu (Korea, Republic of)

    2014-11-15

    A broadband hexagonal-shaped metamaterials (MTMs)-based zeroth-order resonant (ZOR) antenna was designed and fabricated. The hexagonal shape of a top patch on a mushroom structure makes not only direct-current paths between the two ends of the patch but also round-current paths along the outside of the patch, thereby widening the resonance frequency of the mushroom MTM antenna. According to the shape of the hexagon patch, the presented antenna achieved impedance bandwidth of 58.6% corresponding to ultra-wideband technology. The proposed ZOR antenna was modeled by utilizing a composite right- and left-handed (CRLH) transmission line and provided 4 to 9.3 dBi of the antenna gain with reduced size as compared to conventional microstrip antennas at Ku- to K-band frequencies.

  8. Research on the optimization of a bimorph piezoelectric deformable mirror based on zeroth-order method

    Science.gov (United States)

    Wang, Hairen; Hu, Lin

    2016-07-01

    The deformable mirror adjusts the mirror surface shape to compensate the wavefront error in the adaptive optics system. Recently, the adaptive optics has been widely used in many applications, such as astronomical telescopes, high power laser systems, etc. These applications require large diameter deformable mirrors with large stroke, high speed and low cost. Thus, the bimorph piezoelectric deformable mirror, which is a good match for the applications, has attracted more and more attentions. In this paper, we use zeroth-order optimization method to optimize the physical parameters of a bimorph piezoelectric deformable mirror that consists of a metal reflective layer deposited on the top of a slim piezoelectric ceramic surface layer. The electrodes are deposited on the bottom of the piezoelectric ceramic layer. The physical parameters to be optimized include the optimal thickness ratio between the piezoelectric layer and reflective layer, inter-electrode distance, and so on. A few reasonable designs are obtained by a comparative study presented for three geometries of electrodes, which are circular, square and hexagon, respectively.

  9. Zeroth-order design report for the next linear collider. Volume 1

    Energy Technology Data Exchange (ETDEWEB)

    Raubenheimer, T.O. [ed.

    1996-05-01

    This Zeroth Order Design Report (ZDR) for the Next Linear Collider (NLC) has been completed as a feasibility study for a TeV-scale linear collider that incorporates a room-temperature accelerator powered by rf microwaves at 11.424 GHz--similar to that presently used in the SLC, but at four times the rf frequency. The purpose of this study is to examine the complete systems of such a collider, to understand how the parts fit together, and to make certain that every required piece has been included. The design presented here is not fully engineered in any sense, but to be assured that the NLC can be built, attention has been given to a number of critical components and issues that present special challenges. More engineering and development of a number of mechanical and electrical systems remain to be done, but the conclusion of this study is that indeed the NLC is technically feasible and can be expected to reach the performance levels required to perform research at the TeV energy scale. Volume one covers the following: the introduction; electron source; positron source; NLC damping rings; bunch compressors and prelinac; low-frequency linacs and compressors; main linacs; design and dynamics; and RF systems for main linacs.

  10. Zeroth-order design report for the next linear collider. Volume 2

    Energy Technology Data Exchange (ETDEWEB)

    Raubenheimer, T.O. [ed.

    1996-05-01

    This Zeroth-Order Design Report (ZDR) for the Next Linear Collider (NLC) has been completed as a feasibility study for a TeV-scale linear collider that incorporates a room-temperature accelerator powered by rf microwaves at 11.424 GHz--similar to that presently used in the SLC, but at four times the rf frequency. The purpose of this study is to examine the complete systems of such a collider, to understand how the parts fit together, and to make certain that every required piece has been included. The ``design`` presented here is not fully engineered in any sense, but to be assured that the NLC can be built, attention has been given to a number of critical components and issues that present special challenges. More engineering and development of a number of mechanical and electrical systems remain to be done, but the conclusion of this study is that indeed the NLC is technically feasible and can be expected to reach the performance levels required to perform research at the TeV energy scale. Volume II covers the following: collimation systems; IP switch and big bend; final focus; the interaction region; multiple bunch issues; control systems; instrumentation; machine protection systems; NLC reliability considerations; NLC conventional facilities. Also included are four appendices on the following topics: An RF power source upgrade to the NLC; a second interaction region for gamma-gamma, gamma-electron; ground motion: theory and measurement; and beam-based feedback: theory and implementation.

  11. Two-component relativistic density-functional calculations of the dimers of the halogens from bromine through element 117 using effective core potential and all-electron methods.

    Science.gov (United States)

    Mitin, Alexander V; van Wüllen, Christoph

    2006-02-14

    A two-component quasirelativistic Hamiltonian based on spin-dependent effective core potentials is used to calculate ionization energies and electron affinities of the heavy halogen atom bromine through the superheavy element 117 (eka-astatine) as well as spectroscopic constants of the homonuclear dimers of these atoms. We describe a two-component Hartree-Fock and density-functional program that treats spin-orbit coupling self-consistently within the orbital optimization procedure. A comparison with results from high-order Douglas-Kroll calculations--for the superheavy systems also with zeroth-order regular approximation and four-component Dirac results--demonstrates the validity of the pseudopotential approximation. The density-functional (but not the Hartree-Fock) results show very satisfactory agreement with theoretical coupled cluster as well as experimental data where available, such that the theoretical results can serve as an estimate for the hitherto unknown properties of astatine, element 117, and their dimers.

  12. In situ removal of carbon contamination from optics in a vacuum ultraviolet and soft X-ray undulator beamline using oxygen activated by zeroth-order synchrotron radiation.

    Science.gov (United States)

    Toyoshima, Akio; Kikuchi, Takashi; Tanaka, Hirokazu; Adachi, Jun Ichi; Mase, Kazuhiko; Amemiya, Kenta

    2012-09-01

    Carbon contamination of optics is a serious issue in all soft X-ray beamlines because it decreases the quality of experimental data, such as near-edge X-ray absorption fine structure, resonant photoemission and resonant soft X-ray emission spectra in the carbon K-edge region. Here an in situ method involving the use of oxygen activated by zeroth-order synchrotron radiation was used to clean the optics in a vacuum ultraviolet and soft X-ray undulator beamline, BL-13A at the Photon Factory in Tsukuba, Japan. The carbon contamination of the optics was removed by exposing them to oxygen at a pressure of 10(-1)-10(-4) Pa for 17-20 h and simultaneously irradiating them with zeroth-order synchrotron radiation. After the cleaning, the decrease in the photon intensity in the carbon K-edge region reduced to 2-5%. The base pressure of the beamline recovered to 10(-7)-10(-8) Pa in one day without baking. The beamline can be used without additional commissioning.

  13. Angular scattering of light by a homogeneous spherical particle in a zeroth-order Bessel beam and its relationship to plane wave scattering.

    Science.gov (United States)

    Preston, Thomas C; Reid, Jonathan P

    2015-06-01

    The angular scattering of light from a homogeneous spherical particle in a zeroth-order Bessel beam is calculated using a generalized Lorenz-Mie theory. We investigate the dependence of the angular scattering on the semi-apex angle of the Bessel beam and discuss the major features of the resulting scattering plots. We also compare Bessel beam scattering to plane wave scattering and provide criterion for when the difference between the two cases can be considered negligible. Finally, we discuss a method for characterizing spherical particles using angular light scattering. This work is useful to researchers who are interested in characterizing particles trapped in optical beams using angular dependent light scattering measurements.

  14. Multiband small zeroth-order metamaterial antenna

    Science.gov (United States)

    Dakhli, Nabil; Choubani, Fethi; David, Jacques

    2011-06-01

    A novel resonant metamaterial antenna based on the Composite Right/Left-Handed (CRLH) transmission line (TL) model is presented. The proposed small antenna is designed to operate simultaneously over multiple wireless services (UMTS-WLAN-WIMAX)

  15. Two-component multi-configurational second-order perturbation theory with Kramers restricted complete active space self-consistent field reference function and spin-orbit relativistic effective core potential

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Inkoo; Lee, Yoon Sup, E-mail: yslee@kaist.edu [Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 305-701 (Korea, Republic of)

    2014-10-28

    We report the formulation and implementation of KRCASPT2, a two-component multi-configurational second-order perturbation theory based on Kramers restricted complete active space self-consistent field (KRCASSCF) reference function, in the framework of the spin-orbit relativistic effective core potential. The zeroth-order Hamiltonian is defined as the sum of nondiagonal one-electron operators with generalized two-component Fock matrix elements as scalar factors. The Kramers symmetry within the zeroth-order Hamiltonian is maintained via the use of a state-averaged density, allowing a consistent treatment of degenerate states. The explicit expressions are derived for the matrix elements of the zeroth-order Hamiltonian as well as for the perturbation vector. The use of a fully variational reference function and nondiagonal operators in relativistic multi-configurational perturbation theory is reported for the first time. A series of initial calculations are performed on the ionization potential and excitation energies of the atoms of the 6p-block; the results display a significant improvement over those from KRCASSCF, showing a closer agreement with experimental results. Accurate atomic properties of the superheavy elements of the 7p-block are also presented, and the electronic structures of the low-lying excited states are compared with those of their lighter homologues.

  16. Two-component multi-configurational second-order perturbation theory with Kramers restricted complete active space self-consistent field reference function and spin-orbit relativistic effective core potential.

    Science.gov (United States)

    Kim, Inkoo; Lee, Yoon Sup

    2014-10-28

    We report the formulation and implementation of KRCASPT2, a two-component multi-configurational second-order perturbation theory based on Kramers restricted complete active space self-consistent field (KRCASSCF) reference function, in the framework of the spin-orbit relativistic effective core potential. The zeroth-order Hamiltonian is defined as the sum of nondiagonal one-electron operators with generalized two-component Fock matrix elements as scalar factors. The Kramers symmetry within the zeroth-order Hamiltonian is maintained via the use of a state-averaged density, allowing a consistent treatment of degenerate states. The explicit expressions are derived for the matrix elements of the zeroth-order Hamiltonian as well as for the perturbation vector. The use of a fully variational reference function and nondiagonal operators in relativistic multi-configurational perturbation theory is reported for the first time. A series of initial calculations are performed on the ionization potential and excitation energies of the atoms of the 6p-block; the results display a significant improvement over those from KRCASSCF, showing a closer agreement with experimental results. Accurate atomic properties of the superheavy elements of the 7p-block are also presented, and the electronic structures of the low-lying excited states are compared with those of their lighter homologues.

  17. Two component theory and electron magnetic moment

    NARCIS (Netherlands)

    Veltman, M.J.G.

    1998-01-01

    The two-component formulation of quantum electrodynamics is studied. The relation with the usual Dirac formulation is exhibited, and the Feynman rules for the two-component form of the theory are presented in terms of familiar objects. The transformation from the Dirac theory to the two-component th

  18. Two component theory and electron magnetic moment

    NARCIS (Netherlands)

    Veltman, M.J.G.

    1998-01-01

    The two-component formulation of quantum electrodynamics is studied. The relation with the usual Dirac formulation is exhibited, and the Feynman rules for the two-component form of the theory are presented in terms of familiar objects. The transformation from the Dirac theory to the two-component

  19. Two-component Duality and Strings

    CERN Document Server

    Freund, Peter G O

    2007-01-01

    A phenomenologically successful two-component hadronic duality picture led to Veneziano's amplitude, the fundamental first step to string theory. This picture is briefly recalled and its two components are identified as the open strings (mesons and baryons) and closed strings (Pomeron).

  20. Inhibitors targeting two-component signal transduction.

    Science.gov (United States)

    Watanabe, Takafumi; Okada, Ario; Gotoh, Yasuhiro; Utsumi, Ryutaro

    2008-01-01

    A two-component signal transduction system (TCS) is an attractive target for antibacterial agents. In this chapter, we review the TCS inhibitors developed during the past decade and introduce novel drug discovery systems to isolate the inhibitors of the YycG/YycF system, an essential TCS for bacterial growth, in an effort to develop a new class of antibacterial agents.

  1. Zeroth-order inversion of transient head observations

    Energy Technology Data Exchange (ETDEWEB)

    Vasco, D.W.

    2007-08-15

    A high-frequency, asymptotic solution for transient head,appropriate for a medium containing smoothly varying heterogeneity,provides a basis for efficient inverse modeling. The semi analyticsolution is trajectory based, akin to ray methods used in modeling wavepropagation, and may be constructed by post processing the output of anumerical simulator. For high frequencies, the amplitude sensitivities,the relationship between changes in flow properties and changes in headampliude, are dominated by the phase term which may be computed directlyfrom the output of the simulator. Thus, transient head waveforms may beinverted with little more computation than is required to invert arrivaltimes. An applicatino to synthetic head values indicates that thetechnique can be used to improve the fit to waveforms. An application totransient head data from the Migration experiment in Switzerland revealsa narrow, high conductivity pathway within a 0.5 m thick zone offracturing.

  2. Two-component Abelian sandpile models.

    Science.gov (United States)

    Alcaraz, F C; Pyatov, P; Rittenberg, V

    2009-04-01

    In one-component Abelian sandpile models, the toppling probabilities are independent quantities. This is not the case in multicomponent models. The condition of associativity of the underlying Abelian algebras imposes nonlinear relations among the toppling probabilities. These relations are derived for the case of two-component quadratic Abelian algebras. We show that Abelian sandpile models with two conservation laws have only trivial avalanches.

  3. Two-component model of solar plages

    Institute of Scientific and Technical Information of China (English)

    LI; Jianping(李建平); DING; Mingde(丁明德); FANG; Cheng(方成)

    2002-01-01

    By use of the 2-m Mcmath-Pierce telescope at Kitt Peak, the high-quality spectra of a plage with moderate brightness near the center of solar disk were obtained. The data include seven spectral lines, which are Hα, Hβ, CaII H and K lines and the infrared triplet. With the consideration of fine structures of solar plages, a two-component atmospheric model is constructed by keeping the cool component to be the quiet atmosphere. Three cases of the hot component are given for different filling factors where the temperature and density distribution are adjusted in order to reproduce the seven observed spectral profiles. We also briefly discuss the influence of the column density at the base of the corona, m0, and the macro-turbulent velocity on the required filling factor and computed profiles. The two-component model is compared with precious one-component semi-empirical models. The limitation of the model is pointed out and further improvement is indicated.

  4. Two Component Signal Transduction in Desulfovibrio Species

    Energy Technology Data Exchange (ETDEWEB)

    Luning, Eric; Rajeev, Lara; Ray, Jayashree; Mukhopadhyay, Aindrila

    2010-05-17

    The environmentally relevant Desulfovibrio species are sulfate-reducing bacteria that are of interest in the bioremediation of heavy metal contaminated water. Among these, the genome of D. vulgaris Hildenborough encodes a large number of two component systems consisting of 72 putative response regulators (RR) and 64 putative histidinekinases (HK), the majority of which are uncharacterized. We classified the D. vulgaris Hildenborough RRs based on their output domains and compared the distribution of RRs in other sequenced Desulfovibrio species. We have successfully purified most RRs and several HKs as His-tagged proteins. We performed phospho-transfer experiments to verify relationships between cognate pairs of HK and RR, and we have also mapped a few non-cognate HK-RR pairs. Presented here are our discoveries from the Desulfovibrio RR categorization and results from the in vitro studies using purified His tagged D. vulgaris HKs and RRs.

  5. Two-Component Description for Relativistic Fermions

    Institute of Scientific and Technical Information of China (English)

    CHEN Yu-Qi; SANG Wen-Long; YANG Lan-Fei

    2009-01-01

    We propose a two-component form to describe massive relativistic fermions in gauge theories. Relations between the Green's functions in this form and those in the conventional four-component form are derived. It is shown that the S-matrix elements in both forms are exactly the same. The description of the fermion in the new form simplifies significantly the γ-matrix algebra in the four-component form. In particular, in perturbative calculations the propagator of the fermion is a scalar function. As examples, we use this form to reproduce the relativistic spectrum of hydrodron atom, the S-matrix of e+ e-→μ+ μ- and QED one-loop vacuum polarization of photon.

  6. Tobacco two-component gene NTHK2

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    By using a previously isolated tobacco two- component gene NTHK1 as a probe, we screened a cDNA library and obtained a homologous gene designated NTHK2. Sequencing analysis revealed that NTHK2 encoded a putative ethylene receptor homolog and contained a histidine kinase domain and a receiver domain. In the histidine kinase domain, the histidine at the phosphorylation site was replaced by an asparagine. Southern analysis indicated that NTHK2 was present at low copies in tobacco genome. The expression of NTHK2 was studied using a competitive RT-PCR method. It was found that, in young flower buds, NTHK2 was expressed abundantly, while in other organs or tissues, it was expressed in a low level. When leaf was subjected to wounding (cutting) treatment, NTHK2 expression was increased. When tobacco seedlings were stressed with PEG and heat shock, NTHK2 transcription was also enhanced. Other treatments showed little effects. These results indicated that NTHK2 might be involved in the developmental processes and in plant responses to some environmental stresses.

  7. An Introductory Idea for Teaching Two-Component Phase Diagrams

    Science.gov (United States)

    Peckham, Gavin D.; McNaught, Ian J.

    2011-01-01

    The teaching of two-component phase diagrams has attracted little attention in this "Journal," and it is hoped that this article will make a useful contribution. Current physical chemistry textbooks describe two-component phase diagrams adequately, but do so in a piecemeal fashion one section at a time; first solid-liquid equilibria, then…

  8. Two-component micro injection moulding for hearing aid applications

    DEFF Research Database (Denmark)

    Islam, Aminul; Hansen, Hans Nørgaard; Marhöfer, David Maximilian

    2012-01-01

    Two-component (2k) injection moulding is an important process technique at the present state of technology, and it is growing rapidly in the field of precision micro moulding. Besides combining different material properties in the same product, two-component moulding can eliminate many assembly s...

  9. Feedback Control of Two-Component Regulatory Systems.

    Science.gov (United States)

    Groisman, Eduardo A

    2016-09-08

    Two-component systems are a dominant form of bacterial signal transduction. The prototypical two-component system consists of a sensor that responds to a specific input(s) by modifying the output of a cognate regulator. Because the output of a two-component system is the amount of phosphorylated regulator, feedback mechanisms may alter the amount of regulator, and/or modify the ability of a sensor or other proteins to alter the phosphorylation state of the regulator. Two-component systems may display intrinsic feedback whereby the amount of phosphorylated regulator changes under constant inducing conditions and without the participation of additional proteins. Feedback control allows a two-component system to achieve particular steady-state levels, to reach a given steady state with distinct dynamics, to express coregulated genes in a given order, and to activate a regulator to different extents, depending on the signal acting on the sensor.

  10. Receptor domains of two-component signal transduction systems.

    Science.gov (United States)

    Perry, Julie; Koteva, Kalinka; Wright, Gerard

    2011-05-01

    Two-component signal transduction systems are found ubiquitously in prokaryotes, and in archaea, fungi, yeast and some plants, where they regulate physiologic and molecular processes at both transcriptional and post-transcriptional levels. Two-component systems sense changes in environmental conditions when a specific ligand binds to the receptor domain of the histidine kinase sensory component. The structures of many histidine kinase receptors are known, including those which sense extracellular and cytoplasmic signals. In this review, we discuss the basic architecture of two-component signalling circuits, including known system ligands, structure and function of both receptor and signalling domains, the chemistry of phosphotransfer, and cross-talk between different two-component pathways. Given the importance of these systems in regulating cellular responses, many biochemical techniques have been developed for their study and analysis. We therefore also review current methods used to study two-component signalling, including a new affinity-based proteomics approach used to study inducible resistance to the antibiotic vancomycin through the VanSR two-component signal transduction system.

  11. Circulation Condition of Two-component Bose-Einstein Condensate

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    In the report we point out that there exists an intrinsic difference in the internal symmetry of the two components spin-1/2 Bose condensates from that of spinor Bose condensates of the atoms with hyperfine states of nonzero integer-spins,which gives rise to a new topological constrain on the circulation for this two-component spin-1/2 Bose condensates.It is shown that the SU(2) symmetry of the spin-1/2 Bose condensate implies a

  12. Itinerant Ferromagnetism in a Polarized Two-Component Fermi Gas

    DEFF Research Database (Denmark)

    Massignan, Pietro; Yu, Zhenhua; Bruun, Georg

    2013-01-01

    We analyze when a repulsively interacting two-component Fermi gas becomes thermodynamically unstable against phase separation. We focus on the strongly polarized limit, where the free energy of the homogeneous mixture can be calculated accurately in terms of well-defined quasiparticles, the repul......We analyze when a repulsively interacting two-component Fermi gas becomes thermodynamically unstable against phase separation. We focus on the strongly polarized limit, where the free energy of the homogeneous mixture can be calculated accurately in terms of well-defined quasiparticles...

  13. Two component permeation through thin zeolite MFI membranes

    NARCIS (Netherlands)

    Keizer, K.; Burggraaf, A.J.; Vroon, Z.A.E.P.; Verweij, H.

    1998-01-01

    Two component permeation measurements have been performed by the Wicke-Kallenbach method on a thin (3 μm) zeolite MFI (Silicalite-1) membrane with molecules of different kinetic diameters, d(k). The membrane was supported by a flat porous α-Al2O3 substrate. The results obtained could be classified i

  14. two component permeation through thin zeolite MFI membranes

    NARCIS (Netherlands)

    Keizer, Klaas; Burggraaf, Anthonie; Burggraaf, A.J.; Vroon, Z.A.E.P.; Vroon, Z.A.E.P.; Verweij, H.

    1998-01-01

    Two component permeation measurements have been performed by the Wicke–Kallenbach method on a thin (3 μm) zeolite MFI (Silicalite-1) membrane with molecules of different kinetic diameters, dk. The membrane was supported by a flat porous -Al2O3 substrate. The results obtained could be classified in s

  15. TWO-COMPONENT JETS AND THE FANAROFF-RILEY DICHOTOMY

    NARCIS (Netherlands)

    Meliani, Z.; Keppens, R.; Sauty, C.

    2010-01-01

    Transversely stratified jets are observed in many classes of astrophysical objects, ranging from young stellar objects, mu-quasars, to active galactic nuclei and even in gamma-ray bursts. Theoretical arguments support this transverse stratification of jets with two components induced by intrinsic fe

  16. Two component injection moulding: Present and future perspectives

    DEFF Research Database (Denmark)

    Islam, Aminul; Hansen, Hans Nørgaard

    2009-01-01

    Two component injection moulding has widespread industrial applications. Still the technology is yet to gain its full potential in highly demanding and technically challenging applications areas. The smart use of this technology can open the doors for cost effective and convergent manufacturing...

  17. Entanglement Properties in Two-Component Bose-Einstein Condensate

    Science.gov (United States)

    Jiang, Di-You

    2016-10-01

    We investigate entanglement inseparability and bipartite entanglement of in two-component Bose-Einstein condensate in the presence of the nonlinear interatomic interaction, interspecies interaction. Entanglement inseparability and bipartite entanglement have the similar properties. More entanglement can be generated by adjusting the nonlinear interatomic interaction and control the time interval of the entanglement by adjusting interspecies interaction.

  18. Goal-Directed Aiming: Two Components but Multiple Processes

    Science.gov (United States)

    Elliott, Digby; Hansen, Steve; Grierson, Lawrence E. M.; Lyons, James; Bennett, Simon J.; Hayes, Spencer J.

    2010-01-01

    This article reviews the behavioral literature on the control of goal-directed aiming and presents a multiple-process model of limb control. The model builds on recent variants of Woodworth's (1899) two-component model of speed-accuracy relations in voluntary movement and incorporates ideas about dynamic online limb control based on prior…

  19. A small protein that mediates the activation of a two-component system by another two-component system

    OpenAIRE

    Kox, Linda F.F.; Wösten, Marc M. S. M.; Groisman, Eduardo A.

    2000-01-01

    The PmrA–PmrB two-component system of Salmonella enterica controls resistance to the peptide antibiotic polymyxin B and to several antimicrobial proteins from human neutrophils. Transcription of PmrA-activated genes is induced by high iron, but can also be promoted by growth in low magnesium in a process that requires another two-component system, PhoP–PhoQ. Here, we define the genetic basis for the interaction between the PhoP–PhoQ and PmrA–PmrB systems. We have identified pmrD as a PhoP-act...

  20. -Regular Modules

    Directory of Open Access Journals (Sweden)

    Areej M. Abduldaim

    2013-01-01

    Full Text Available We introduced and studied -regular modules as a generalization of -regular rings to modules as well as regular modules (in the sense of Fieldhouse. An -module is called -regular if for each and , there exist and a positive integer such that . The notion of -pure submodules was introduced to generalize pure submodules and proved that an -module is -regular if and only if every submodule of is -pure iff   is a -regular -module for each maximal ideal of . Many characterizations and properties of -regular modules were given. An -module is -regular iff is a -regular ring for each iff is a -regular ring for finitely generated module . If is a -regular module, then .

  1. A two-component NZRI metamaterial based rectangular cloak

    Science.gov (United States)

    Islam, Sikder Sunbeam; Faruque, Mohammd Rashed Iqbal; Islam, Mohammad Tariqul

    2015-10-01

    A new two-component, near zero refractive index (NZRI) metamaterial is presented for electromagnetic rectangular cloaking operation in the microwave range. In the basic design a pi-shaped, metamaterial was developed and its characteristics were investigated for the two major axes (x and z-axis) wave propagation through the material. For the z-axis wave propagation, it shows more than 2 GHz bandwidth and for the x-axis wave propagation; it exhibits more than 1 GHz bandwidth of NZRI property. The metamaterial was then utilized in designing a rectangular cloak where a metal cylinder was cloaked perfectly in the C-band area of microwave regime. The experimental result was provided for the metamaterial and the cloak and these results were compared with the simulated results. This is a novel and promising design for its two-component NZRI characteristics and rectangular cloaking operation in the electromagnetic paradigm.

  2. On a periodic two-component Hunter-Saxton equation

    CERN Document Server

    Kohlmann, Martin

    2011-01-01

    We determine the solution of the geodesic equation associated with a periodic two-component Hunter-Saxton system on a semidirect product obtained from the diffeomorphism group of the circle, modulo rigid rotations, and a space of scalar functions. In particular, we compute the time of breakdown of the geodesic flow. As a further goal, we establish a local well-posedness result for the two-component Hunter-Saxton system in the smooth category. The paper gets in line with some recent results for the generalized Hunter-Saxton equation provided by Escher, Wu and Wunsch in [J. Escher, Preprint 2010] and [H. Wu, M. Wunsch, arXiv:1009.1688v1 [math.AP

  3. Two Component Injection Moulding for Moulded Interconnect Devices

    DEFF Research Database (Denmark)

    Islam, Aminul

    The moulded interconnect devices (MIDs) contain huge possibilities for many applications in micro electro-mechanical-systems because of their potential in reducing the number of components, process steps and finally in miniaturization of the product. Among the available MID process chains, two...... component (2k) injection moulding is one of the most industrially adaptive processes. However, the use of two component injection moulding for MID fabrication, with circuit patterns in sub-millimeter range, is still a big challenge. This book searches for the technical difficulties associated...... with the process and makes attempts to overcome those challenges. In search of suitable polymer materials for MID applications, potential materials are characterized in terms of polymer-polymer bond strength, polymer-polymer interface quality and selective metallization. The experimental results find the factors...

  4. Two-component microinjection moulding for MID fabrication

    DEFF Research Database (Denmark)

    Islam, Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben

    2010-01-01

    Moulded interconnect devices (MIDs) are plastic substrates with electrical infrastructure. The fabrication of MIDs is usually based on injection moulding, and different process chains may be identified from this starting point. The use of MIDs has been driven primarily by the automotive sector......, but recently, the medical sector seems more and more interested. In particular, the possibility of miniaturisation of three-dimensional components with electrical infrastructure is attractive. The present paper describes possible manufacturing routes and challenges of miniaturised MIDs based on two......-component injection moulding and subsequent metallisation. This technology promises cost effective and convergent manufacturing approaches for both macro- and microapplications. This paper presents the results of industrial MID production based on two-component injection moulding and discusses the important issues...

  5. Interaction Analysis of a Two-Component System Using Nanodiscs.

    Directory of Open Access Journals (Sweden)

    Patrick Hörnschemeyer

    Full Text Available Two-component systems are the major means by which bacteria couple adaptation to environmental changes. All utilize a phosphorylation cascade from a histidine kinase to a response regulator, and some also employ an accessory protein. The system-wide signaling fidelity of two-component systems is based on preferential binding between the signaling proteins. However, information on the interaction kinetics between membrane embedded histidine kinase and its partner proteins is lacking. Here, we report the first analysis of the interactions between the full-length membrane-bound histidine kinase CpxA, which was reconstituted in nanodiscs, and its cognate response regulator CpxR and accessory protein CpxP. Using surface plasmon resonance spectroscopy in combination with interaction map analysis, the affinity of membrane-embedded CpxA for CpxR was quantified, and found to increase by tenfold in the presence of ATP, suggesting that a considerable portion of phosphorylated CpxR might be stably associated with CpxA in vivo. Using microscale thermophoresis, the affinity between CpxA in nanodiscs and CpxP was determined to be substantially lower than that between CpxA and CpxR. Taken together, the quantitative interaction data extend our understanding of the signal transduction mechanism used by two-component systems.

  6. Rewiring the specificity of two-component signal transduction systems.

    Science.gov (United States)

    Skerker, Jeffrey M; Perchuk, Barrett S; Siryaporn, Albert; Lubin, Emma A; Ashenberg, Orr; Goulian, Mark; Laub, Michael T

    2008-06-13

    Two-component signal transduction systems are the predominant means by which bacteria sense and respond to environmental stimuli. Bacteria often employ tens or hundreds of these paralogous signaling systems, comprised of histidine kinases (HKs) and their cognate response regulators (RRs). Faithful transmission of information through these signaling pathways and avoidance of detrimental crosstalk demand exquisite specificity of HK-RR interactions. To identify the determinants of two-component signaling specificity, we examined patterns of amino acid coevolution in large, multiple sequence alignments of cognate kinase-regulator pairs. Guided by these results, we demonstrate that a subset of the coevolving residues is sufficient, when mutated, to completely switch the substrate specificity of the kinase EnvZ. Our results shed light on the basis of molecular discrimination in two-component signaling pathways, provide a general approach for the rational rewiring of these pathways, and suggest that analyses of coevolution may facilitate the reprogramming of other signaling systems and protein-protein interactions.

  7. Two-Component Multi-Parameter Time-Frequency Electromagnetics

    Institute of Scientific and Technical Information of China (English)

    HuangZhou; DongWeibin; HeTiezhi

    2003-01-01

    The two-component multi-parameter time-frequency electromagnetic method, used for the development of oilfields,makes use of both the traditional individual conductivity parameters of oil-producing layers and the dispersion information of the conductivity, i.e., the induced polarization parameter. The frequency-domain dispersion data is used to delineate the contacts between oil and water and the time domain dBz/dt component is used to estimate the depths to the un-known reservoirs so as to offer significant data in many aspects for oil exploration and detection.

  8. A polaritonic two-component Bose-Hubbard model

    Energy Technology Data Exchange (ETDEWEB)

    Hartmann, M J; Brandao, F G S L; Plenio, M B [Institute for Mathematical Sciences, Imperial College London, 53 Exhibition Road, SW7 2PE (United Kingdom)], E-mail: m.hartmann@imperial.ac.uk

    2008-03-15

    We demonstrate that polaritons in an array of interacting micro-cavities with strong atom-photon coupling can form a two-component Bose-Hubbard model in which both polariton species are protected against spontaneous emission as their atomic part is stored in two ground states of the atoms. The parameters of the effective model can be tuned via the driving strength of external lasers and include attractive and repulsive polariton interactions. We also describe a method to measure the number statistics in one cavity for each polariton species independently.

  9. Two component micro injection moulding for moulded interconnect devices

    DEFF Research Database (Denmark)

    Islam, Aminul

    2008-01-01

    Moulded interconnect devices (MIDs) contain huge possibilities for many applications in micro electro-mechanical-systems because of their capability of reducing the number of components, process steps and finally in miniaturization of the product. Among the available MID process chains, two...... and a reasonable adhesion between them. • Selective metallization of the two component plastic part (coating one polymer with metal and leaving the other one uncoated) To overcome these two main issues in MID fabrication for micro applications, the current Ph.D. project explores the technical difficulties...

  10. Two-component Fermi gas in a Harmonic Trap

    CERN Document Server

    Yi, X X; Cui, H T; Zhang, C M

    2002-01-01

    We consider a mixture of two-component Fermi gases at low temperature. The density profile of this degenerate Fermi gas is calculated under the semiclassical approximation. The results show that the fermion-fermion interactions make a large correction to the density profile at low temperature. The phase separation of such a mixture is also discussed for both attractive and repulsive interatomic interactions, and the numerical calculations demonstrate the exist of a stable temperature region $T_{c1}

  11. Interaction potentials and thermodynamic properties of two component semiclassical plasma

    Energy Technology Data Exchange (ETDEWEB)

    Ramazanov, T. S.; Moldabekov, Zh. A.; Ismagambetova, T. N. [Al-Farabi Kazakh National University, IETP, 71 al-Farabi Av., Almaty 050040 (Kazakhstan); Gabdullin, M. T. [Al-Farabi Kazakh National University, NNLOT, 71 al-Farabi Av., Almaty 050040 (Kazakhstan)

    2014-01-15

    In this paper, the effective interaction potential in two component semiclassical plasma, taking into account the long-range screening and the quantum-mechanical diffraction effects at short distances, is obtained on the basis of dielectric response function method. The structural properties of the semiclassical plasma are considered. The thermodynamic characteristics (the internal energy and the equation of state) are calculated using two methods: the method of effective potentials and the method of micropotentials with screening effect taken into account by the Ornstein-Zernike equation in the HNC approximation.

  12. Itinerant ferromagnetism in a polarized two-component Fermi gas.

    Science.gov (United States)

    Massignan, Pietro; Yu, Zhenhua; Bruun, Georg M

    2013-06-07

    We analyze when a repulsively interacting two-component Fermi gas becomes thermodynamically unstable against phase separation. We focus on the strongly polarized limit, where the free energy of the homogeneous mixture can be calculated accurately in terms of well-defined quasiparticles, the repulsive polarons. Phase diagrams as a function of polarization, temperature, mass imbalance, and repulsive polaron energy, as well as scattering length and range parameter, are provided. We show that the lifetime of the repulsive polaron increases significantly with the interaction range and the mass of the minority atoms, raising the prospects of detecting the transition to the elusive itinerant ferromagnetic state with ultracold atoms.

  13. Two component micro injection molding for MID fabrication

    DEFF Research Database (Denmark)

    Islam, Mohammad Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben

    2009-01-01

    Molded Interconnect Devices (MIDs) are plastic substrates with electrical infrastructure. The fabrication of MIDs is usually based on injection molding and different process chains may be identified from this starting point. The use of MIDs has been driven primarily by the automotive sector......, but recently the medical sector seems more and more interested. In particular the possibility of miniaturization of 3D components with electrical infrastructure is attractive. The paper describes possible manufacturing routes and challenges of miniaturized MIDs based on two component micro injection molding...

  14. Graphene Oxide: A One- versus Two-Component Material.

    Science.gov (United States)

    Naumov, Anton; Grote, Fabian; Overgaard, Marc; Roth, Alexandra; Halbig, Christian E; Nørgaard, Kasper; Guldi, Dirk M; Eigler, Siegfried

    2016-09-14

    The structure of graphene oxide (GO) is a matter of discussion. While established GO models are based on functional groups attached to the carbon framework, another frequently used model claims that GO consists of two components, a slightly oxidized graphene core and highly oxidized molecular species, oxidative debris (OD), adsorbed on it. Those adsorbents are claimed to be the origin for optical properties of GO. Here, we examine this model by preparing GO with a low degree of functionalization, combining it with OD and studying the optical properties of both components and their combination in an artificial two-component system. The analyses of absorption and emission spectra as well as lifetime measurements reveal that properties of the combined system are distinctly different from those of GO. That confirms structural models of GO as a separate oxygenated hexagonal carbon framework with optical properties governed by its internal structure rather than the presence of OD. Understanding the structure of GO allows further reliable interpretation of its optical and electronic properties and enables controlled processing of GO.

  15. Evolution of two-component signal transduction systems.

    Science.gov (United States)

    Capra, Emily J; Laub, Michael T

    2012-01-01

    To exist in a wide range of environmental niches, bacteria must sense and respond to a variety of external signals. A primary means by which this occurs is through two-component signal transduction pathways, typically composed of a sensor histidine kinase that receives the input stimuli and then phosphorylates a response regulator that effects an appropriate change in cellular physiology. Histidine kinases and response regulators have an intrinsic modularity that separates signal input, phosphotransfer, and output response; this modularity has allowed bacteria to dramatically expand and diversify their signaling capabilities. Recent work has begun to reveal the molecular basis by which two-component proteins evolve. How and why do orthologous signaling proteins diverge? How do cells gain new pathways and recognize new signals? What changes are needed to insulate a new pathway from existing pathways? What constraints are there on gene duplication and lateral gene transfer? Here, we review progress made in answering these questions, highlighting how the integration of genome sequence data with experimental studies is providing major new insights.

  16. The Evolution of Two-Component Signal Transduction Systems

    Science.gov (United States)

    Capra, Emily J.; Laub, Michael T.

    2014-01-01

    To exist in a wide range of environmental niches, bacteria must sense and respond to a myriad of external signals. A primary means by which this occurs is through two-component signal transduction pathways, typically comprised of a histidine kinase that receives the input stimuli and a response regulator that effects an appropriate change in cellular physiology. Histidine kinases and response regulators have an intrinsic modularity that separates signal input, phosphotransfer, and output response; this modularity has allowed bacteria to dramatically expand and diversify their signaling capabilities. Recent work has begun to reveal the molecular basis by which two-component proteins evolve. How and why do orthologous signaling proteins diverge? How do cells gain new pathways and recognize new signals? What changes are needed to insulate a new pathway from existing pathways? What constraints are there on gene duplication and lateral gene transfer? Here, we review progress made in answering these questions, highlighting how the integration of genome sequence data with experimental studies is providing major new insights. PMID:22746333

  17. Regular figures

    CERN Document Server

    Tóth, L Fejes; Ulam, S; Stark, M

    1964-01-01

    Regular Figures concerns the systematology and genetics of regular figures. The first part of the book deals with the classical theory of the regular figures. This topic includes description of plane ornaments, spherical arrangements, hyperbolic tessellations, polyhedral, and regular polytopes. The problem of geometry of the sphere and the two-dimensional hyperbolic space are considered. Classical theory is explained as describing all possible symmetrical groupings in different spaces of constant curvature. The second part deals with the genetics of the regular figures and the inequalities fo

  18. Two-component systems and toxinogenesis regulation in Clostridium botulinum.

    Science.gov (United States)

    Connan, Chloé; Popoff, Michel R

    2015-05-01

    Botulinum neurotoxins (BoNTs) are the most potent toxins ever known. They are mostly produced by Clostridium botulinum but also by other clostridia. BoNTs associate with non-toxic proteins (ANTPs) to form complexes of various sizes. Toxin production is highly regulated through complex networks of regulatory systems involving an alternative sigma factor, BotR, and at least 6 recently described two-component systems (TCSs). TCSs allow bacteria to sense environmental changes and to respond to various stimuli by regulating the expression of specific genes at a transcriptional level. Several environmental stimuli have been identified to positively or negatively regulate toxin synthesis; however, the link between environmental stimuli and TCSs is still elusive. This review aims to highlight the role of TCSs as a central point in the regulation of toxin production in C. botulinum.

  19. Exact two-component relativistic energy band theory and application

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Rundong; Zhang, Yong; Xiao, Yunlong; Liu, Wenjian, E-mail: liuwj@pku.edu.cn [Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, State Key Laboratory of Rare Earth Materials Chemistry and Applications, College of Chemistry and Molecular Engineering, and Center for Computational Science and Engineering, Peking University, Beijing 100871 (China)

    2016-01-28

    An exact two-component (X2C) relativistic density functional theory in terms of atom-centered basis functions is proposed for relativistic calculations of band structures and structural properties of periodic systems containing heavy elements. Due to finite radial extensions of the local basis functions, the periodic calculation is very much the same as a molecular calculation, except only for an Ewald summation for the Coulomb potential of fluctuating periodic monopoles. For comparison, the nonrelativistic and spin-free X2C counterparts are also implemented in parallel. As a first and pilot application, the band gaps, lattice constants, cohesive energies, and bulk moduli of AgX (X = Cl, Br, I) are calculated to compare with other theoretical results.

  20. Dynamics of two-component membranes surrounded by viscoelastic media.

    Science.gov (United States)

    Komura, Shigeyuki; Yasuda, Kento; Okamoto, Ryuichi

    2015-11-01

    We discuss the dynamics of two-component fluid membranes which are surrounded by viscoelastic media. We assume that membrane-embedded proteins can diffuse laterally and induce a local membrane curvature. The mean squared displacement of a tagged membrane segment is obtained as a generalized Einstein relation. When the elasticity of the surrounding media obeys a power-law behavior in frequency, an anomalous diffusion of the membrane segment is predicted. We also consider the situation where the proteins generate active non-equilibrium forces. The generalized Einstein relation is further modified by an effective temperature that depends on the force dipole energy. The obtained generalized Einstein relations are useful for membrane microrheology experiments.

  1. Two-component jet simulations: Combining analytical and numerical approaches

    CERN Document Server

    Matsakos, T; Trussoni, E; Tsinganos, K; Vlahakis, N; Sauty, C; Mignone, A

    2009-01-01

    Recent observations as well as theoretical studies of YSO jets suggest the presence of two steady components: a disk wind type outflow needed to explain the observed high mass loss rates and a stellar wind type outflow probably accounting for the observed stellar spin down. In this framework, we construct numerical two-component jet models by properly mixing an analytical disk wind solution with a complementary analytically derived stellar outflow. Their combination is controlled by both spatial and temporal parameters, in order to address different physical conditions and time variable features. We study the temporal evolution and the interaction of the two jet components on both small and large scales. The simulations reach steady state configurations close to the initial solutions. Although time variability is not found to considerably affect the dynamics, flow fluctuations generate condensations, whose large scale structures have a strong resemblance to observed YSO jet knots.

  2. Exact two-component relativistic energy band theory and application.

    Science.gov (United States)

    Zhao, Rundong; Zhang, Yong; Xiao, Yunlong; Liu, Wenjian

    2016-01-28

    An exact two-component (X2C) relativistic density functional theory in terms of atom-centered basis functions is proposed for relativistic calculations of band structures and structural properties of periodic systems containing heavy elements. Due to finite radial extensions of the local basis functions, the periodic calculation is very much the same as a molecular calculation, except only for an Ewald summation for the Coulomb potential of fluctuating periodic monopoles. For comparison, the nonrelativistic and spin-free X2C counterparts are also implemented in parallel. As a first and pilot application, the band gaps, lattice constants, cohesive energies, and bulk moduli of AgX (X = Cl, Br, I) are calculated to compare with other theoretical results.

  3. Recent advances in description of few two-component fermions

    CERN Document Server

    Kartavtsev, O I

    2012-01-01

    Overview of the recent advances in description of the few two-component fermions is presented. The zero-range interaction limit is generally considered to discuss the principal aspects of the few-body dynamics. Significant attention is paid to detailed description of two identical fermions of mass $m$ and a distinct particle of mass $m_1$; two universal $L^P = 1^-$ bound states arise for mass ratio $m/m_1$ increasing up to the critical value $\\mu_c \\approx 13.607$, beyond which the Efimov effect takes place. The topics considered include rigorous treatment of the few-fermion problem in the zero-range interaction limit, low-dimensional results, the four-body energy spectrum, crossover of the energy spectra for $m/m_1$ near the critical value $\\mu_c $, and properties of potential-dependent states. At last, enlisted are the problems, whose solution is in due course.

  4. Molecular Mechanisms of Two-Component Signal Transduction.

    Science.gov (United States)

    Zschiedrich, Christopher P; Keidel, Victoria; Szurmant, Hendrik

    2016-09-25

    Two-component systems (TCS) comprising sensor histidine kinases and response regulator proteins are among the most important players in bacterial and archaeal signal transduction and also occur in reduced numbers in some eukaryotic organisms. Given their importance to cellular survival, virulence, and cellular development, these systems are among the most scrutinized bacterial proteins. In the recent years, a flurry of bioinformatics, genetic, biochemical, and structural studies have provided detailed insights into many molecular mechanisms that underlie the detection of signals and the generation of the appropriate response by TCS. Importantly, it has become clear that there is significant diversity in the mechanisms employed by individual systems. This review discusses the current knowledge on common themes and divergences from the paradigm of TCS signaling. An emphasis is on the information gained by a flurry of recent structural and bioinformatics studies.

  5. Bond strength of two component injection moulded MID

    DEFF Research Database (Denmark)

    Islam, Mohammad Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben

    2006-01-01

    Most products of the future will require industrially adapted, cost effective production processes and on this issue two-component (2K) injection moulding is a potential candidate for MID manufacturing. MID based on 2k injection moulded plastic part with selectively metallised circuit tracks allows...... the integration of electrical and mechanical functionalities in a real 3D structure. If 2k injection moulding is applied with two polymers, of which one is plateable and the other is not, it will be possible to make 3D electrical structures directly on the component. To be applicable in the real engineering field...... the two different plastic materials in the MID structure require good bonding between them. This paper finds suitable combinations of materials for MIDs from both bond strength and metallisation view-point. Plastic parts were made by two-shot injection moulding and the effects of some important process...

  6. Efficient two-component relativistic method for large systems

    Energy Technology Data Exchange (ETDEWEB)

    Nakai, Hiromi [Department of Chemitsry and Biochemistry, School of Advanced Science and Engineering, Waseda University, Tokyo 169-8555 (Japan); Research Institute for Science and Engineering, Waseda University, Tokyo 169-8555 (Japan); CREST, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012 (Japan); Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Katsura, Kyoto 615-8520 (Japan)

    2015-12-31

    This paper reviews a series of theoretical studies to develop efficient two-component (2c) relativistic method for large systems by the author’s group. The basic theory is the infinite-order Douglas-Kroll-Hess (IODKH) method for many-electron Dirac-Coulomb Hamiltonian. The local unitary transformation (LUT) scheme can effectively produce the 2c relativistic Hamiltonian, and the divide-and-conquer (DC) method can achieve linear-scaling of Hartree-Fock and electron correlation methods. The frozen core potential (FCP) theoretically connects model potential calculations with the all-electron ones. The accompanying coordinate expansion with a transfer recurrence relation (ACE-TRR) scheme accelerates the computations of electron repulsion integrals with high angular momenta and long contractions.

  7. No electrostatic supersolitons in two-component plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Verheest, Frank, E-mail: frank.verheest@ugent.be [Sterrenkundig Observatorium, Universiteit Gent, Krijgslaan 281, B–9000 Gent (Belgium); School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4000 (South Africa); Lakhina, Gurbax S., E-mail: lakhina@iigm.iigs.res.in [Indian Institute of Geomagnetism, New Panvel (W), Navi Mumbai (India); Hellberg, Manfred A., E-mail: hellberg@ukzn.ac.za [School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4000 (South Africa)

    2014-06-15

    The concept of acoustic supersolitons was introduced for a very specific plasma with five constituents, and discussed only for a single set of plasma parameters. Supersolitons are characterized by having subsidiary extrema on the sides of a typical bipolar electric field signature, or by association with a root beyond double layers in the fully nonlinear Sagdeev pseudopotential description. It was subsequently found that supersolitons could exist in several plasma models having three constituent species, rather than four or five. In the present paper, it is proved that standard two-component plasma models cannot generate supersolitons, by recalling and extending results already in the literature, and by establishing the necessary properties of a more recent model.

  8. Budding Transition of Asymmetric Two-component Lipid Domains

    CERN Document Server

    Wolff, Jean; Andelman, David

    2016-01-01

    We propose a model that accounts for the budding transition of asymmetric two-component lipid domains, where the two monolayers (leaflets) have different average compositions controlled by independent chemical potentials. Assuming a coupling between the local curvature and local lipid composition in each of the leaflets, we discuss the morphology and thermodynamic behavior of asymmetric lipid domains. The membrane free-energy contains three contributions: the bending energy, the line tension, and a Landau free-energy for a lateral phase separation. Within a mean-field treatment, we obtain various phase diagrams containing fully budded, dimpled, and flat states as a function of the two leaflet compositions. The global phase behavior is analyzed, and depending on system parameters, the phase diagrams include one-phase, two-phase and three-phase regions. In particular, we predict various phase coexistence regions between different morphologies of domains, which may be observed in multi-component membranes or ves...

  9. The mechanism of signal transduction by two-component systems.

    Science.gov (United States)

    Casino, Patricia; Rubio, Vicente; Marina, Alberto

    2010-12-01

    Two-component systems, composed of a homodimeric histidine kinase (HK) and a response regulator (RR), are major signal transduction devices in bacteria. Typically the signal triggers HK autophosphorylation at one His residue, followed by phosphoryl transfer from the phospho-His to an Asp residue in the RR. Signal extinction frequently involves phospho-RR dephosphorylation by a phosphatase activity of the HK. Our understanding of these reactions and of the determinants of partner specificity among HK-RR couples has been greatly increased by recent crystal structures and biochemical experiments on HK-RR complexes. Cis-autophosphorylation (one subunit phosphorylates itself) occurs in some HKs while trans-autophosphorylation takes place in others. We review and integrate this new information, discuss the mechanism of the three reactions and propose a model for transmembrane signaling by these systems. Copyright © 2010 Elsevier Ltd. All rights reserved.

  10. Determinants of specificity in two-component signal transduction.

    Science.gov (United States)

    Podgornaia, Anna I; Laub, Michael T

    2013-04-01

    Maintaining the faithful flow of information through signal transduction pathways is critical to the survival and proliferation of organisms. This problem is particularly challenging as many signaling proteins are part of large, paralogous families that are highly similar at the sequence and structural levels, increasing the risk of unwanted cross-talk. To detect environmental signals and process information, bacteria rely heavily on two-component signaling systems comprised of sensor histidine kinases and their cognate response regulators. Although most species encode dozens of these signaling pathways, there is relatively little cross-talk, indicating that individual pathways are well insulated and highly specific. Here, we review the molecular mechanisms that enforce this specificity. Further, we highlight recent studies that have revealed how these mechanisms evolve to accommodate the introduction of new pathways by gene duplication. Copyright © 2013 Elsevier Ltd. All rights reserved.

  11. Rewiring two-component signal transduction with small RNAs.

    Science.gov (United States)

    Göpel, Yvonne; Görke, Boris

    2012-04-01

    Bacterial two-component systems (TCSs) and small regulatory RNAs (sRNAs) form densely interconnected networks that integrate and transduce information from the environment into fine-tuned changes of gene expression. Many TCSs control target genes indirectly through regulation of sRNAs, which in turn regulate gene expression by base-pairing with mRNAs or targeting a protein. Conversely, sRNAs may control TCS synthesis, thereby recruiting the TCS regulon to other regulatory networks. Several TCSs control expression of multiple homologous sRNAs providing the regulatory networks with further flexibility. These sRNAs act redundantly, additively or hierarchically on targets. The regulatory speed of sRNAs and their unique features in gene regulation make them ideal players extending the flexibility, dynamic range or timing of TCS signaling. Copyright © 2011 Elsevier Ltd. All rights reserved.

  12. Auxiliary phosphatases in two-component signal transduction.

    Science.gov (United States)

    Silversmith, Ruth E

    2010-04-01

    Signal termination in two-component systems occurs by loss of the phosphoryl group from the response regulator protein. This review explores our current understanding of the structures, catalytic mechanisms and means of regulation of the known families of phosphatases that catalyze response regulator dephosphorylation. The CheZ and CheC/CheX/FliY families, despite different overall structures, employ identical catalytic strategies using an amide side chain to orient a water molecule for in-line attack of the aspartyl phosphate. Spo0E phosphatases contain sequence and structural features that suggest a strategy similar to the chemotaxis phosphatases but the mechanism used by the Rap phosphatases is not yet elucidated. Identification of features shared by phosphatase families may aid in the identification of currently unrecognized classes of response regulator phosphatases. Copyright 2010 Elsevier Ltd. All rights reserved.

  13. How insects overcome two-component plant chemical defence

    DEFF Research Database (Denmark)

    Pentzold, Stefan; Zagrobelny, Mika; Rook, Frederik;

    2014-01-01

    Insect herbivory is often restricted by glucosylated plant chemical defence compounds that are activated by plant β-glucosidases to release toxic aglucones upon plant tissue damage. Such two-component plant defences are widespread in the plant kingdom and examples of these classes of compounds...... are alkaloid, benzoxazinoid, cyanogenic and iridoid glucosides as well as glucosinolates and salicinoids. Conversely, many insects have evolved a diversity of counteradaptations to overcome this type of constitutive chemical defence. Here we discuss that such counter-adaptations occur at different time points......-component chemical defence. These adaptations include host plant choice, non-disruptive feeding guilds and various physiological adaptations as well as metabolic enzymatic strategies of the insect’s digestive system. Furthermore, insect adaptations often act in combination, may exist in both generalists...

  14. Parallel TREE code for two-component ultracold plasma analysis

    Science.gov (United States)

    Jeon, Byoungseon; Kress, Joel D.; Collins, Lee A.; Grønbech-Jensen, Niels

    2008-02-01

    The TREE method has been widely used for long-range interaction N-body problems. We have developed a parallel TREE code for two-component classical plasmas with open boundary conditions and highly non-uniform charge distributions. The program efficiently handles millions of particles evolved over long relaxation times requiring millions of time steps. Appropriate domain decomposition and dynamic data management were employed, and large-scale parallel processing was achieved using an intermediate level of granularity of domain decomposition and ghost TREE communication. Even though the computational load is not fully distributed in fine grains, high parallel efficiency was achieved for ultracold plasma systems of charged particles. As an application, we performed simulations of an ultracold neutral plasma with a half million particles and a half million time steps. For the long temporal trajectories of relaxation between heavy ions and light electrons, large configurations of ultracold plasmas can now be investigated, which was not possible in past studies.

  15. Implementation of Two Component Advective Flow Solution in XSPEC

    CERN Document Server

    Debnath, Dipak; Mondal, Santanu

    2014-01-01

    Spectral and Temporal properties of black hole candidates can be explained reasonably well using Chakrabarti-Titarchuk solution of two component advective flow (TCAF). This model requires two accretion rates, namely, the Keplerian disk accretion rate and the halo accretion rate, the latter being composed of a sub-Keplerian, low angular momentum flow which may or may not develop a shock. In this solution, the relevant parameter is the relative importance of the halo (which creates the Compton cloud region) rate with respect to the Keplerian disk rate (soft photon source). Though this model has been used earlier to manually fit data of several black hole candidates quite satisfactorily, for the first time, we made it user friendly by implementing it into XSPEC software of GSFC/NASA. This enables any user to extract physical parameters of the accretion flows, such as two accretion rates, the shock location, the shock strength etc. for any black hole candidate. We provide some examples of fitting a few cases usin...

  16. Dynamical principles of two-component genetic oscillators.

    Directory of Open Access Journals (Sweden)

    Raúl Guantes

    2006-03-01

    Full Text Available Genetic oscillators based on the interaction of a small set of molecular components have been shown to be involved in the regulation of the cell cycle, the circadian rhythms, or the response of several signaling pathways. Uncovering the functional properties of such oscillators then becomes important for the understanding of these cellular processes and for the characterization of fundamental properties of more complex clocks. Here, we show how the dynamics of a minimal two-component oscillator is drastically affected by its genetic implementation. We consider a repressor and activator element combined in a simple logical motif. While activation is always exerted at the transcriptional level, repression is alternatively operating at the transcriptional (Design I or post-translational (Design II level. These designs display differences on basic oscillatory features and on their behavior with respect to molecular noise or entrainment by periodic signals. In particular, Design I induces oscillations with large activator amplitudes and arbitrarily small frequencies, and acts as an "integrator" of external stimuli, while Design II shows emergence of oscillations with finite, and less variable, frequencies and smaller amplitudes, and detects better frequency-encoded signals ("resonator". Similar types of stimulus response are observed in neurons, and thus this work enables us to connect very different biological contexts. These dynamical principles are relevant for the characterization of the physiological roles of simple oscillator motifs, the understanding of core machineries of complex clocks, and the bio-engineering of synthetic oscillatory circuits.

  17. Hamiltonian of a homogeneous two-component plasma.

    Science.gov (United States)

    Essén, Hanno; Nordmark, A

    2004-03-01

    The Hamiltonian of one- and two-component plasmas is calculated in the negligible radiation Darwin approximation. Since the Hamiltonian is the phase space energy of the system its form indicates, according to statistical mechanics, the nature of the thermal equilibrium that plasmas strive to attain. The main issue is the length scale of the magnetic interaction energy. In the past a screening length lambda=1/square root of r(e)n], with n number density and r(e) classical electron radius, has been derived. We address the question whether the corresponding longer screening range obtained from the classical proton radius is physically relevant and the answer is affirmative. Starting from the Darwin Lagrangian it is nontrivial to find the Darwin Hamiltonian of a macroscopic system. For a homogeneous system we resolve the difficulty by temporarily approximating the particle number density by a smooth constant density. This leads to Yukawa-type screened vector potential. The nontrivial problem of finding the corresponding, divergence free, Coulomb gauge version is solved.

  18. A minimal model for two-component dark matter

    Energy Technology Data Exchange (ETDEWEB)

    Esch, Sonja; Klasen, Michael; Yaguna, Carlos E. [Institut fuer theoretische Physik, Universitaet Muenster, Wilhelm-Klemm-Strasse 9,D-48149 Muenster (Germany)

    2015-07-01

    We propose and study a new minimal model for two-component dark matter. The model contains only three additional fields, one fermion and two scalars, all singlets under the Standard Model gauge group. Two of these fields, one fermion and one scalar, are odd under a Z{sub 2} symmetry that renders them simultaneously stable. Thus, both particles contribute to the observed dark matter density. This model resembles the union of the singlet scalar and the singlet fermionic models but it contains some new features of its own. We analyze in some detail its dark matter phenomenology. Regarding the relic density, the main novelty is the possible annihilation of one dark matter particle into the other, which can affect the predicted relic density in a significant way. Regarding dark matter detection, we identify a new contribution that can lead either to an enhancement or to a suppression of the spin-independent cross section for the scalar dark matter particle. Finally, we define a set of five benchmarks models compatible with all present bounds and examine their direct detection prospects at planned experiments. A generic feature of this model is that both particles give rise to observable signals in 1-ton direct detection experiments. In fact, such experiments will be able to probe even a subdominant dark matter component at the percent level.

  19. A minimal model for two-component dark matter

    CERN Document Server

    Esch, Sonja; Yaguna, Carlos E

    2014-01-01

    We propose and study a new minimal model for two-component dark matter. The model contains only three additional fields, one fermion and two scalars, all singlets under the Standard Model gauge group. Two of these fields, one fermion and one scalar, are odd under a $Z_2$ symmetry that renders them simultaneously stable. Thus, both particles contribute to the observed dark matter density. This model resembles the union of the singlet scalar and the singlet fermionic models but it contains some new features of its own. We analyze in some detail its dark matter phenomenology. Regarding the relic density, the main novelty is the possible annihilation of one dark matter particle into the other, which can affect the predicted relic density in a significant way. Regarding dark matter detection, we identify a new contribution that can lead either to an enhancement or to a suppression of the spin-independent cross section for the scalar dark matter particle. Finally, we define a set of five benchmarks models compatibl...

  20. A minimal model for two-component dark matter

    Science.gov (United States)

    Esch, Sonja; Klasen, Michael; Yaguna, Carlos E.

    2014-09-01

    We propose and study a new minimal model for two-component dark matter. The model contains only three additional fields, one fermion and two scalars, all singlets under the Standard Model gauge group. Two of these fields, one fermion and one scalar, are odd under a Z 2 symmetry that renders them simultaneously stable. Thus, both particles contribute to the observed dark matter density. This model resembles the union of the singlet scalar and the singlet fermionic models but it contains some new features of its own. We analyze in some detail its dark matter phenomenology. Regarding the relic density, the main novelty is the possible annihilation of one dark matter particle into the other, which can affect the predicted relic density in a significant way. Regarding dark matter detection, we identify a new contribution that can lead either to an enhancement or to a suppression of the spin-independent cross section for the scalar dark matter particle. Finally, we define a set of five benchmarks models compatible with all present bounds and examine their direct detection prospects at planned experiments. A generic feature of this model is that both particles give rise to observable signals in 1-ton direct detection experiments. In fact, such experiments will be able to probe even a subdominant dark matter component at the percent level.

  1. Two-component perfect fluid in FRW universe

    CERN Document Server

    ,

    2012-01-01

    We propose the cosmological model which allows to describe on equal footing the evolution of matter in the universe on the time interval from the inflation till the domination of dark energy. The matter is considered as a two-component perfect fluid imitated by homogeneous scalar fields between which there is energy exchange. Dark energy is represented by the cosmological constant, which is supposed invariable during the whole evolution of the universe. The matter changes its equation of state with time, so that the era of radiation domination in the early universe smoothly passes into the era of a pressureless gas, which then passes into the late-time epoch, when the matter is represented by a gas of low-velocity cosmic strings. The inflationary phase is described as an analytic continuation of the energy density in the very early universe into the region of small negative values of the parameter which characterizes typical time of energy transfer from one matter component to another. The Hubble expansion ra...

  2. Zeroth-order flutter prediction for cantilevered plates in supersonic flow

    CSIR Research Space (South Africa)

    Meijer, M-C

    2015-08-01

    Full Text Available An aeroelastic prediction framework in MATLAB with modularity in the quasi-steady aerodynamic methodology is developed. Local piston theory (LPT) is integrated with quasi-steady methods including shock-expansion theory and the Supersonic Hypersonic...

  3. Two component systems: physiological effect of a third component.

    Directory of Open Access Journals (Sweden)

    Baldiri Salvado

    Full Text Available Signal transduction systems mediate the response and adaptation of organisms to environmental changes. In prokaryotes, this signal transduction is often done through Two Component Systems (TCS. These TCS are phosphotransfer protein cascades, and in their prototypical form they are composed by a kinase that senses the environmental signals (SK and by a response regulator (RR that regulates the cellular response. This basic motif can be modified by the addition of a third protein that interacts either with the SK or the RR in a way that could change the dynamic response of the TCS module. In this work we aim at understanding the effect of such an additional protein (which we call "third component" on the functional properties of a prototypical TCS. To do so we build mathematical models of TCS with alternative designs for their interaction with that third component. These mathematical models are analyzed in order to identify the differences in dynamic behavior inherent to each design, with respect to functionally relevant properties such as sensitivity to changes in either the parameter values or the molecular concentrations, temporal responsiveness, possibility of multiple steady states, or stochastic fluctuations in the system. The differences are then correlated to the physiological requirements that impinge on the functioning of the TCS. This analysis sheds light on both, the dynamic behavior of synthetically designed TCS, and the conditions under which natural selection might favor each of the designs. We find that a third component that modulates SK activity increases the parameter space where a bistable response of the TCS module to signals is possible, if SK is monofunctional, but decreases it when the SK is bifunctional. The presence of a third component that modulates RR activity decreases the parameter space where a bistable response of the TCS module to signals is possible.

  4. The Fractional Virial Potential Energy in Two-Component Systems

    Directory of Open Access Journals (Sweden)

    Caimmi, R.

    2008-12-01

    Full Text Available Two-component systems are conceived as macrogases, and the related equation of state is expressed using the virial theorem for subsystems, under the restriction of homeoidally striated density profiles. Explicit calculations are performed for a useful reference case and a few cases of astrophysical interest, both with and without truncation radius. Shallower density profiles are found to yield an equation of state, $phi=phi(y,m$, characterized (for assigned values of the fractional mass, $m=M_j/ M_i$ by the occurrence of two extremum points, a minimum and a maximum, as found in an earlier attempt. Steeper density profiles produce a similar equation of state, which implies that a special value of $m$ is related to a critical curve where the above mentioned extremum points reduce to a single horizontal inflexion point, and curves below the critical one show no extremum points. The similarity of the isofractional mass curves to van der Waals' isothermal curves, suggests the possibility of a phase transition in a bell-shaped region of the $({sf O}yphi$ plane, where the fractional truncation radius along a selected direction is $y=R_j/R_i$, and the fractional virial potential energy is $phi=(E_{ji}_mathrm{vir}/(E_{ij}_mathrm{vir}$. Further investigation is devoted to mass distributions described by Hernquist (1990 density profiles, for which an additional relation can be used to represent a sample of $N=16$ elliptical galaxies (EGs on the $({sf O}yphi$ plane. Even if the evolution of elliptical galaxies and their hosting dark matter (DM haloes, in the light of the model, has been characterized by equal fractional mass, $m$, and equal scaled truncation radius, or concentration, $Xi_u=R_u/r_u^dagger$, $u=i,j$, still it cannot be considered as strictly homologous, due to different values of fractional truncation radii, $y$, or fractional scaling radii, $y^dagger=r_j^dagger/r_i^dagger$, deduced from sample objects.

  5. Adaptive regularization

    DEFF Research Database (Denmark)

    Hansen, Lars Kai; Rasmussen, Carl Edward; Svarer, C.

    1994-01-01

    Regularization, e.g., in the form of weight decay, is important for training and optimization of neural network architectures. In this work the authors provide a tool based on asymptotic sampling theory, for iterative estimation of weight decay parameters. The basic idea is to do a gradient descent...... in the estimated generalization error with respect to the regularization parameters. The scheme is implemented in the authors' Designer Net framework for network training and pruning, i.e., is based on the diagonal Hessian approximation. The scheme does not require essential computational overhead in addition...... to what is needed for training and pruning. The viability of the approach is demonstrated in an experiment concerning prediction of the chaotic Mackey-Glass series. The authors find that the optimized weight decays are relatively large for densely connected networks in the initial pruning phase, while...

  6. Regular polytopes

    CERN Document Server

    Coxeter, H S M

    1973-01-01

    Polytopes are geometrical figures bounded by portions of lines, planes, or hyperplanes. In plane (two dimensional) geometry, they are known as polygons and comprise such figures as triangles, squares, pentagons, etc. In solid (three dimensional) geometry they are known as polyhedra and include such figures as tetrahedra (a type of pyramid), cubes, icosahedra, and many more; the possibilities, in fact, are infinite! H. S. M. Coxeter's book is the foremost book available on regular polyhedra, incorporating not only the ancient Greek work on the subject, but also the vast amount of information

  7. Initial data problems for the two-component Camassa-Holm system

    Directory of Open Access Journals (Sweden)

    Xiaohuan Wang

    2014-06-01

    Full Text Available This article concerns the study of some properties of the two-component Camassa-Holm system. By constructing two sequences of solutions of the two-component Camassa-Holm system, we prove that the solution map of the Cauchy problem of the two-component Camassa-Holm system is not uniformly continuous in $H^s(\\mathbb{R}$, $s>5/2$.

  8. Analytical method for yrast line states in the interacting two-component Bose-Einstein condensate

    Institute of Scientific and Technical Information of China (English)

    解炳昊; 景辉

    2002-01-01

    The yrast spectrum for the harmonically trapped two-component Bose-Einstein condensate (BEC), omitting thedifference between the two components, has been studied using an analytical method. The energy eigenstates andeigenvalues for L=0,1,2,3 are given. We illustrate that there are different eigenstate behaviours between the even Land odd L cases for the two-component BEC in two dimensions. Except for symmetric states, there are antisymmetricstates for the permutation of the two components, which cannot reduce to those in a single condensate case when thevalue of L is odd.

  9. Two-Component Super AKNS Equations and Their Finite-Dimensional Integrable Super Hamiltonian System

    OpenAIRE

    Jing Yu; Jingwei Han

    2014-01-01

    Starting from a matrix Lie superalgebra, two-component super AKNS system is constructed. By making use of monononlinearization technique of Lax pairs, we find that the obtained two-component super AKNS system is a finite-dimensional integrable super Hamiltonian system. And its Lax representation and $r$ -matrix are also given in this paper.

  10. TASI 2011 lectures notes: two-component fermion notation and supersymmetry

    OpenAIRE

    Martin, Stephen P.

    2012-01-01

    These notes, based on work with Herbi Dreiner and Howie Haber, discuss how to do practical calculations of cross sections and decay rates using two-component fermion notation, as appropriate for supersymmetry and other beyond-the-Standard-Model theories. Included are a list of two-component fermion Feynman rules for the Minimal Supersymmetric Standard Model, and some example calculations.

  11. Relativistic two-component jet evolutions in 2D and 3D

    NARCIS (Netherlands)

    Meliani, Z.; Keppens, R.

    2009-01-01

    Observations of astrophysical jets and theoretical arguments suggest a transverse stratification with two components induced by intrinsic features of the central engine (accretion disk + black hole). We study two-component jet dynamics for an inner fast low density jet, surrounded by a slower, dense

  12. Two-Component Super AKNS Equations and Their Finite-Dimensional Integrable Super Hamiltonian System

    Directory of Open Access Journals (Sweden)

    Jing Yu

    2014-01-01

    Full Text Available Starting from a matrix Lie superalgebra, two-component super AKNS system is constructed. By making use of monononlinearization technique of Lax pairs, we find that the obtained two-component super AKNS system is a finite-dimensional integrable super Hamiltonian system. And its Lax representation and r-matrix are also given in this paper.

  13. Preparation and frictional investigation of the two-components silanes deposited on alumina surface

    Energy Technology Data Exchange (ETDEWEB)

    Kośla, K.; Grobelny, J.; Cichomski, M., E-mail: mcichom@uni.lodz.pl

    2014-09-30

    Highlights: • The two-component silane films on the alumina surface were obtained by a combination of soft lithography and vapor phase deposition method. • The effectiveness of modification procedure was monitored by AFM topography images. • By using gas phase deposition method succeeded in obtaining a good reproduction of pattern. • Silane films with low surface free energy and coefficient of friction values were obtained. • The frictional performance in milli-Newton load range of one- and two-component films was investigated by microtribometry. - Abstract: Functionalization and pattering technique that permits two-component pattern-specific modification of alumina surface with silanes molecules are reported. The method relies on a two-component molecular system that simultaneously decreases coefficient of friction of the alumina surface and provides uniform chemical functionality suitable for further elaboration. Pattern/two-component modification is achieved via gas-phase deposition of the silanes using polydimethylsiloxane stamp. The frictional behaviors of the two-component films of the silane molecules with different chain length covalently absorbed on alumina surfaces, were characterized by the ball-disk (microtribometer) tester. The surfaces of the substrate modified by two-component molecular films were examined by atomic force microscopy (AFM). The measured tribological results showed that the mixing of the fluoroalkylsilane and alkylsilane enhance the lubrication and decrease the friction compared to the one-component thin films.

  14. Methods of producing epoxides from alkenes using a two-component catalyst system

    Science.gov (United States)

    Kung, Mayfair C.; Kung, Harold H.; Jiang, Jian

    2013-07-09

    Methods for the epoxidation of alkenes are provided. The methods include the steps of exposing the alkene to a two-component catalyst system in an aqueous solution in the presence of carbon monoxide and molecular oxygen under conditions in which the alkene is epoxidized. The two-component catalyst system comprises a first catalyst that generates peroxides or peroxy intermediates during oxidation of CO with molecular oxygen and a second catalyst that catalyzes the epoxidation of the alkene using the peroxides or peroxy intermediates. A catalyst system composed of particles of suspended gold and titanium silicalite is one example of a suitable two-component catalyst system.

  15. Two-component generalizations of the periodic Camassa-Holm and Degasperis-Procesi equations

    CERN Document Server

    Escher, Joachim; Lenells, Jonatan

    2010-01-01

    We use geometric methods to study two natural two-component generalizations of the periodic Camassa-Holm and Degasperis-Procesi equations. We show that these generalizations can be regarded as geodesic equations on the semidirect product of the diffeomorphism group of the circle $\\Diff(S^1)$ with some space of sufficiently smooth functions on the circle. Our goals are to understand the geometric properties of these two-component systems and to prove local well-posedness in various function spaces. Furthermore, we perform some explicit curvature calculations for the two-component Camassa-Holm equation, giving explicit examples of large subspaces of positive curvature.

  16. Evolution and phyletic distribution of two-component signal transduction systems.

    Science.gov (United States)

    Wuichet, Kristin; Cantwell, Brian J; Zhulin, Igor B

    2010-04-01

    Two-component signal transduction systems are abundant in prokaryotes. They enable cells to adjust multiple cellular functions in response to changing environmental conditions. These systems are also found, although in much smaller numbers, in lower eukaryotes and plants, where they appear to control a few very specific functions. Two-component systems have evolved in Bacteria from much simpler one-component systems bringing about the benefit of extracellular versus intracellular sensing. We review reports establishing the origins of two-component systems and documenting their occurrence in major lineages of Life. Copyright 2010 Elsevier Ltd. All rights reserved.

  17. Travelling wave solutions for some two-component shallow water models

    Science.gov (United States)

    Dutykh, Denys; Ionescu-Kruse, Delia

    2016-07-01

    In the present study we perform a unified analysis of travelling wave solutions to three different two-component systems which appear in shallow water theory. Namely, we analyze the celebrated Green-Naghdi equations, the integrable two-component Camassa-Holm equations and a new two-component system of Green-Naghdi type. In particular, we are interested in solitary and cnoidal-type solutions, as two most important classes of travelling waves that we encounter in applications. We provide a complete phase-plane analysis of all possible travelling wave solutions which may arise in these models. In particular, we show the existence of new type of solutions.

  18. Two-Component Wadati-Konno-Ichikawa Equation and Its Symmetry Reductions

    Institute of Scientific and Technical Information of China (English)

    QU Chang-Zheng; YAO Ruo-Xia; LI Zhi-Bin

    2004-01-01

    @@ It is shown that two-component Wadati-Konno-Ichikawa (WKI) equation, i.e. a generalization of the well-known WKI equation, is obtained from the motion of space curves in Euclidean geometry, and it is exactly a system for the graph of the curves when the curve motion is governed by the two-component modified Korteweg-de Vries flow. Group-invariant solutions of the two-component WKI equation which corresponds to an optimal system of its Lie point symmetry groups are obtained, and its similarity reductions to systems of ordinary differential equations are also given.

  19. Scale and Contour: Two Components of a Theory of Memory for Melodies.

    Science.gov (United States)

    Dowling, W. Jay

    1978-01-01

    The author concentrates on two components of memory which contribute to the reproduction and recognition of melodies, namely, melodic contour and musical scale. A new experiment is reported that shows the interdependence of both components. (Author/RK)

  20. Laser controlling chaotic region of a two-component Bose-Einstein condensate

    Institute of Scientific and Technical Information of China (English)

    Boli Xia; Wenhua Hai

    2005-01-01

    @@ For a weakly and periodically driven two-component Bose-Einstein condensate (BEC) the Melnikov chaotic solution and boundedness conditions are derived from a direct perturbation theory that leads to the chaotic regions in the parameter space.

  1. Role of functionality in two-component signal transduction: A stochastic study

    Science.gov (United States)

    Maity, Alok Kumar; Bandyopadhyay, Arnab; Chaudhury, Pinaki; Banik, Suman K.

    2014-03-01

    We present a stochastic formalism for signal transduction processes in a bacterial two-component system. Using elementary mass action kinetics, the proposed model takes care of signal transduction in terms of a phosphotransfer mechanism between the cognate partners of a two-component system, viz., the sensor kinase and the response regulator. Based on the difference in functionality of the sensor kinase, the noisy phosphotransfer mechanism has been studied for monofunctional and bifunctional two-component systems using the formalism of the linear noise approximation. Steady-state analysis of both models quantifies different physically realizable quantities, e.g., the variance, the Fano factor (variance/mean), and mutual information. The resultant data reveal that both systems reliably transfer information of extracellular environment under low external stimulus and in a high-kinase-and-phosphatase regime. We extend our analysis further by studying the role of the two-component system in downstream gene regulation.

  2. Two component injection moulding: an interface quality and bond strength dilemma

    DEFF Research Database (Denmark)

    Islam, Mohammad Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben

    2008-01-01

    Two component injection moulding is a special branch of injection moulding where two different polymers are combined in to a single part to exploit the different material properties in the final product. Considering the technical and economical importance of the process, this paper investigates...... on quality parameters of the two component parts. Most engineering applications of two component injection moulding calls for high bond strength between the two polymers, on the other hand a sharp and well-defined interface between the two polymers are required for applications like selective metallization...... conditions for a sharp and well-defined interface are exactly the opposite of what is congenial for higher bond strength. So in the production of two component injection moulded parts, there is a compromise to make between the interface quality and the bond strength of the two polymers. Also the injection...

  3. Crystallographic characterization of a multidomain histidine protein kinase from an essential two-component regulatory system

    OpenAIRE

    ZHAO, Haiyan; Tang, Liang

    2009-01-01

    The multidomain cytoplasmic portion of the histidine protein kinase from an essential two-component signal transduction system has been crystallized and X-ray data have been collected to 2.8 Å resolution.

  4. Photoisomerization-induced morphology and transparency transition in an azobenzene based two-component organogel system.

    Science.gov (United States)

    Cao, Xinhua; Liu, Xue; Chen, Liming; Mao, Yueyuan; Lan, Haichuang; Yi, Tao

    2015-11-15

    A two-component gel containing long chain alkylated gallic acid (GA) and photochromic phenazopyridine (PAP) was prepared. The gel was thoroughly characterized by UV-visible and IR spectra, SEM and POM images, XRD diffraction and dynamic oscillatory measurements. The structure and transparency of the two-component gel can be reversibly changed by alternative UV light irradiation and warming in the palm of the hand. This kind of soft material has potential application in upscale surface functional materials.

  5. Competitive Adsorption of a Two-Component Gas on a Deformable Adsorbent

    OpenAIRE

    Usenko, A. S.

    2013-01-01

    We investigate the competitive adsorption of a two-component gas on the surface of an adsorbent whose adsorption properties vary in adsorption due to the adsorbent deformation. The essential difference of adsorption isotherms for a deformable adsorbent both from the classical Langmuir adsorption isotherms of a two-component gas and from the adsorption isotherms of a one-component gas taking into account variations in adsorption properties of the adsorbent in adsorption is obtained. We establi...

  6. Evolution and phyletic distribution of two-component signal transduction systems

    OpenAIRE

    Wuichet, Kristin; Cantwell, Brian J.; Zhulin, Igor B.

    2010-01-01

    Two-component signal transduction systems are abundant in prokaryotes. They enable cells to adjust multiple cellular functions in response to changing environmental conditions. These systems are also found, although in much smaller numbers, in lower eukaryotes and plants, where they appear to control a few very specific functions. Two-component systems have evolved in Bacteria from much simpler one-component systems bringing about the benefit of extracellular versus intracellular sensing. We ...

  7. Variational derivation of two-component Camassa-Holm shallow water system

    CERN Document Server

    Ionescu-Kruse, Delia

    2012-01-01

    By a variational approach in the Lagrangian formalism, we derive the nonlinear integrable two-component Camassa-Holm system (1). We show that the two-component Camassa-Holm system (1) with the plus sign arises as an approximation to the Euler equations of hydrodynamics for propagation of irrotational shallow water waves over a flat bed. The Lagrangian used in the variational derivation is not a metric.

  8. Chloroplast two-component systems: evolution of the link between photosynthesis and gene expression

    OpenAIRE

    Puthiyaveetil, Sujith; Allen, John F.

    2009-01-01

    Two-component signal transduction, consisting of sensor kinases and response regulators, is the predominant signalling mechanism in bacteria. This signalling system originated in prokaryotes and has spread throughout the eukaryotic domain of life through endosymbiotic, lateral gene transfer from the bacterial ancestors and early evolutionary precursors of eukaryotic, cytoplasmic, bioenergetic organelles—chloroplasts and mitochondria. Until recently, it was thought that two-component systems i...

  9. Two-component mediated peroxide sensing and signal transduction in fission yeast.

    Science.gov (United States)

    Quinn, Janet; Malakasi, Panagiota; Smith, Deborah A; Cheetham, Jill; Buck, Vicky; Millar, Jonathan B A; Morgan, Brian A

    2011-07-01

    Two-component related proteins play a major role in regulating the oxidative stress response in the fission yeast, Schizosaccharomyces pombe. For example, the peroxide-sensing Mak2 and Mak3 histidine kinases regulate H(2)O(2)-induced activation of the Sty1 stress-activated protein kinase pathway, and the Skn7-related response regulator transcription factor, Prr1, is essential for activation of the core oxidative stress response genes. Here, we investigate the mechanism by which the S. pombe two-component system senses H(2)O(2), and the potential role of two-component signaling in the regulation of Prr1. Significantly, we demonstrate that PAS and GAF domains present in the Mak2 histidine kinase are essential for redox-sensing and activation of Sty1. In addition, we find that Prr1 is required for the transcriptional response to a wide range of H(2)O(2) concentrations and, furthermore, that two-component regulation of Prr1 is specifically required for the response of cells to high levels of H(2)O(2). Significantly, this provides the first demonstration that the conserved two-component phosphorylation site on Skn7-related proteins influences resistance to oxidative stress and oxidative stress-induced gene expression. Collectively, these data provide new insights into the two-component mediated sensing and signaling mechanisms underlying the response of S. pombe to oxidative stress.

  10. Comparative analysis of wolbachia genomes reveals streamlining and divergence of minimalist two-component systems.

    Science.gov (United States)

    Christensen, Steen; Serbus, Laura Renee

    2015-03-24

    Two-component regulatory systems are commonly used by bacteria to coordinate intracellular responses with environmental cues. These systems are composed of functional protein pairs consisting of a sensor histidine kinase and cognate response regulator. In contrast to the well-studied Caulobacter crescentus system, which carries dozens of these pairs, the streamlined bacterial endosymbiont Wolbachia pipientis encodes only two pairs: CckA/CtrA and PleC/PleD. Here, we used bioinformatic tools to compare characterized two-component system relays from C. crescentus, the related Anaplasmataceae species Anaplasma phagocytophilum and Ehrlichia chaffeensis, and 12 sequenced Wolbachia strains. We found the core protein pairs and a subset of interacting partners to be highly conserved within Wolbachia and these other Anaplasmataceae. Genes involved in two-component signaling were positioned differently within the various Wolbachia genomes, whereas the local context of each gene was conserved. Unlike Anaplasma and Ehrlichia, Wolbachia two-component genes were more consistently found clustered with metabolic genes. The domain architecture and key functional residues standard for two-component system proteins were well-conserved in Wolbachia, although residues that specify cognate pairing diverged substantially from other Anaplasmataceae. These findings indicate that Wolbachia two-component signaling pairs share considerable functional overlap with other α-proteobacterial systems, whereas their divergence suggests the potential for regulatory differences and cross-talk.

  11. Stochastic study of information transmission and population stability in a generic bacterial two-component system

    CERN Document Server

    Mapder, Tarunendu; Banik, Suman K

    2016-01-01

    Studies on the role of fluctuations in signal propagation and on gene regulation in monoclonal bacterial population have been extensively pursued based on the machinery of two-component system. The bacterial two-component system shows noise utilisation through its inherent plasticity. The fluctuations propagation takes place using the phosphotransfer module and the feedback mechanism during gene regulation. To delicately observe the noisy kinetics the generic cascade needs stochastic investigation at the mRNA and protein levels. To this end, we propose a theoretical framework to investigate the noisy signal transduction in a generic two-component system. The model shows reliability in information transmission through quantification of several statistical measures. We further extend our analysis to observe the protein distribution in a population of cells. Through numerical simulation, we identify the regime of the kinetic parameter set that generates a stability switch in the steady state distribution of prot...

  12. Two-Component Signal Transduction Systems in the Cyanobacterium Synechocystis sp. PCC 6803

    Institute of Scientific and Technical Information of China (English)

    LIU Xingguo; HUANG Wei; WU Qingyu

    2006-01-01

    Two-component systems are signal transduction systems which enable bacteria to regulate cellular functions in response to changing environmental conditions. The unicellular Synechocystis sp. PCC 6803 has become a model organism for a range of biochemical and molecular biology studies aiming at investigating environmental stress response. The publication of the complete genome sequence of the cyanobacterium Synechocystis sp. PCC 6803 provided a tremendous stimulus for research in this field, and at least 80 open reading frames were identified as members of the two-component signal transduction systems in this single species of cyanobacteria. To date, functional roles have been determined for only a limited number of such proteins. This review summarizes our current knowledge about the two-component signal transduction systems in Synechocystis sp. PCC 6803 and describes recent achievements in elucidating the functional roles of these systems.

  13. Modeling Thermal Dust Emission with Two Components: Application to the Planck High Frequency Instrument Maps

    Science.gov (United States)

    Meisner, Aaron M.; Finkbeiner, Douglas P.

    2015-01-01

    We apply the Finkbeiner et al. two-component thermal dust emission model to the Planck High Frequency Instrument maps. This parameterization of the far-infrared dust spectrum as the sum of two modified blackbodies (MBBs) serves as an important alternative to the commonly adopted single-MBB dust emission model. Analyzing the joint Planck/DIRBE dust spectrum, we show that two-component models provide a better fit to the 100-3000 GHz emission than do single-MBB models, though by a lesser margin than found by Finkbeiner et al. based on FIRAS and DIRBE. We also derive full-sky 6.'1 resolution maps of dust optical depth and temperature by fitting the two-component model to Planck 217-857 GHz along with DIRBE/IRAS 100 μm data. Because our two-component model matches the dust spectrum near its peak, accounts for the spectrum's flattening at millimeter wavelengths, and specifies dust temperature at 6.'1 FWHM, our model provides reliable, high-resolution thermal dust emission foreground predictions from 100 to 3000 GHz. We find that, in diffuse sky regions, our two-component 100-217 GHz predictions are on average accurate to within 2.2%, while extrapolating the Planck Collaboration et al. single-MBB model systematically underpredicts emission by 18.8% at 100 GHz, 12.6% at 143 GHz, and 7.9% at 217 GHz. We calibrate our two-component optical depth to reddening, and compare with reddening estimates based on stellar spectra. We find the dominant systematic problems in our temperature/reddening maps to be zodiacal light on large angular scales and the cosmic infrared background anisotropy on small angular scales.

  14. Domain Walls and Textured Vortices in a Two-Component Ginzburg-Landau Model

    DEFF Research Database (Denmark)

    Madsen, Søren Peder; Gaididei, Yu. B.; Christiansen, Peter Leth

    2005-01-01

    We look for domain wall and textured vortex solutions in a two-component Ginzburg-Landau model inspired by two-band superconductivity. The two-dimensional two-component model, with equal coherence lengths and no magnetic field, shows some interesting properties. In the absence of a Josephson type...... coupling between the two order parameters a ''textured vortex'' is found by analytical and numerical solution of the Ginzburg-Landau equations. With a Josephson type coupling between the two order parameters we find the system to split up in two domains separated by a domain wall, where the order parameter...

  15. Block algebra in two-component BKP and D type Drinfeld-Sokolov hierarchies

    Science.gov (United States)

    Li, Chuanzhong; He, Jingsong

    2013-11-01

    We construct generalized additional symmetries of a two-component BKP hierarchy defined by two pseudo-differential Lax operators. These additional symmetry flows form a Block type algebra with some modified (or additional) terms because of a B type reduction condition of this integrable hierarchy. Further we show that the D type Drinfeld-Sokolov hierarchy, which is a reduction of the two-component BKP hierarchy, possess a complete Block type additional symmetry algebra. That D type Drinfeld-Sokolov hierarchy has a similar algebraic structure as the bigraded Toda hierarchy which is a differential-discrete integrable system.

  16. Rabi Oscillations in Two-Component Bose-Einstein Condensates with a Coupling Drive

    Institute of Scientific and Technical Information of China (English)

    LI Wei-Dong; FAN Wen-Bing; ZHOU Xiao-Ji; WANG Yi-Qiu; LIANG Jiu-Qing

    2002-01-01

    The Rabi oscillations in two-component Bose-Einstein condensates with a coupling drive are studiedby means of a pair of bosonic operators. The coupling drive and initial phase difference will affect the amplitudeand the period of the Rabi oscillations. The Rabi oscillations will vanish in the evolution of the condensate densityfor some special initial phase differences (ψ = 0 or π). Our theory provides not only an analytical framework forquantitative predictions for two-component condensates, but also gives an intuitive understanding of some mysteriousfeatures observed in experiments and numerical. simulations.

  17. Targeting two-component signal transduction: a novel drug discovery system.

    Science.gov (United States)

    Okada, Ario; Gotoh, Yasuhiro; Watanabe, Takafumi; Furuta, Eiji; Yamamoto, Kaneyoshi; Utsumi, Ryutaro

    2007-01-01

    We have developed two screening systems for isolating inhibitors that target bacterial two-component signal transduction: (1) a differential growth assay using a temperature-sensitive yycF mutant (CNM2000) of Bacillus subtilis, which is supersensitive to histidine kinase inhibitors, and (2) a high-throughput genetic system for targeting the homodimerization of histidine kinases essential for the bacterial two-component signal transduction. By using these methods, we have been able to identify various types of inhibitors that block the autophosphorylation of histidine kinases with different modes of actions.

  18. Modulational instability of two-component Bose-Einstein condensates in an optical lattice

    CERN Document Server

    Jin, G R; Nahm, K; Jin, Guang-Ri; Kim, Chul Koo; Nahm, Kyun

    2004-01-01

    We study modulational instability of two-component Bose-Einstein condensates in a deep optical lattice, which is modelled as a coupled discrete nonlinear Schr\\"{o}dinger equation. The excitation spectrum and the modulational instability condition of the total system are presented analytically. In the long-wavelength limit, our results agree with the homogeneous two-component Bose-Einstein condensates case. The discreteness effects result in the appearance of the modulational instability for the condensates in miscible region. The numerical calculations confirm our analytical results and show that the interspecies coupling can transfer the instability from one component to another.

  19. Domain Walls and Textured Vortices in a Two-Component Ginzburg-Landau Model

    DEFF Research Database (Denmark)

    Madsen, Søren Peder; Gaididei, Yu. B.; Christiansen, Peter Leth

    2005-01-01

    We look for domain wall and textured vortex solutions in a two-component Ginzburg-Landau model inspired by two-band superconductivity. The two-dimensional two-component model, with equal coherence lengths and no magnetic field, shows some interesting properties. In the absence of a Josephson type...... coupling between the two order parameters a ''textured vortex'' is found by analytical and numerical solution of the Ginzburg-Landau equations. With a Josephson type coupling between the two order parameters we find the system to split up in two domains separated by a domain wall, where the order parameter...

  20. Block algebra in two-component BKP and D type Drinfeld-Sokolov hierarchies

    Energy Technology Data Exchange (ETDEWEB)

    Li, Chuanzhong, E-mail: lichuanzhong@nbu.edu.cn; He, Jingsong, E-mail: hejingsong@nbu.edu.cn [Department of Mathematics, Ningbo University, Ningbo 315211 (China)

    2013-11-15

    We construct generalized additional symmetries of a two-component BKP hierarchy defined by two pseudo-differential Lax operators. These additional symmetry flows form a Block type algebra with some modified (or additional) terms because of a B type reduction condition of this integrable hierarchy. Further we show that the D type Drinfeld-Sokolov hierarchy, which is a reduction of the two-component BKP hierarchy, possess a complete Block type additional symmetry algebra. That D type Drinfeld-Sokolov hierarchy has a similar algebraic structure as the bigraded Toda hierarchy which is a differential-discrete integrable system.

  1. Three-wave interaction in two-component quadratic nonlinear lattices

    DEFF Research Database (Denmark)

    Konotop, V. V.; Cunha, M. D.; Christiansen, Peter Leth

    1999-01-01

    We investigate a two-component lattice with a quadratic nonlinearity and find with the multiple scale technique that integrable three-wave interaction takes place between plane wave solutions when these fulfill resonance conditions. We demonstrate that. energy conversion and pulse propagation kno...

  2. A novel two-component system found in Mycobacterium tuberculosis

    DEFF Research Database (Denmark)

    Morth, J. P.; Gosmann, S.; Nowak, E.;

    2005-01-01

    We report the identification of a novel two-component system in Mycobacterium tuberculosis. We show that the putative histidine kinase with the genomic locus tag Rv3220c is able to self-phosphorylate in the presence of Mg2+/ATP and subsequently transfer the phosphoryl group to a novel response...

  3. Light Responsive Two-Component Supramolecular Hydrogel: A Sensitive Platform for Humidity Sensors

    KAUST Repository

    Samai, Suman

    2016-02-15

    The supramolecular assembly of anionic azobenzene dicarboxylate and cationic cetyltrimethylammonium bromide (CTAB) formed a stimuli responsive hydrogel with a critical gelation concentration (CGC) of 0.33 wt%. This self-sustainable two-component system was able to repair damage upon light irradiation. Moreover, it was successfully employed in the fabrication of highly sensitive humidity sensors for the first time.

  4. A Two-Component Generalization of Burgers' Equation with Quasi-Periodic Solution

    Science.gov (United States)

    Pan, Hongfei; Xia, Tiecheng; Chen, Dengyuan

    2014-10-01

    In this paper, we aim for the theta function representation of quasi-periodic solution and related crucial quantities for a two-component generalization of Burgers' equation. Our tools include the theory of algebraic curves, meromorphic functions, Baker-Akhiezer functions and the Dubrovin-type equations for auxiliary divisor. Eith these tools, the explicit representations for above quantities are obtained.

  5. Two-component Brownian coagulation: Monte Carlo simulation and process characterization

    Institute of Scientific and Technical Information of China (English)

    Haibo Zhao; Chu guang Zheng

    2011-01-01

    The compositional distribution within aggregates of a given size is essential to the functionality of composite aggregates that are usually enlarged by rapid Brownian coagulation.There is no analytical solution for the process of such two-component systems.Monte Carlo method is an effective numerical approach for two-component coagulation.In this paper,the differentially weighted Monte Carlo method is used to investigate two-component Brownian coagulation,respectively,in the continuum regime,the freemolecular regime and the transition regime.It is found that ( 1 ) for Brownian coagulation in the continuum regime and in the free-molecular regime,the mono-variate compositional distribution,i.e.,the number density distribution function of one component amount (in the form of volume of the component in aggregates) satisfies self-preserving form the same as particle size distribution in mono-component Brownian coagulation; (2) however,for Brownian coagulation in the transition regime the mono-variate compositional distribution cannot reach self-similarity; and (3) the bivariate compositional distribution,i.e.,the combined number density distribution function of two component amounts in the three regimes satisfies a semi self-preserving form.Moreover,other new features inherent to aggregative mixing are also demonstrated; e.g.,the degree of mixing between components,which is largely controlled by the initial compositional mass fraction,improves as aggregate size increases.

  6. Transport of a two-component mixture in one-dimensional channels

    NARCIS (Netherlands)

    Borman, VD; Tronin, VN; Tronin, [No Value; Troyan, [No Value

    2004-01-01

    The transport of a two-component gas mixture in subnanometer channels is investigated theoretically for an arbitrary filling of channels. Special attention is paid to consistent inclusion of density effects, which are associated both with the interaction and with a finite size of particles. The anal

  7. The Integrability of New Two-Component KdV Equation

    Directory of Open Access Journals (Sweden)

    Ziemowit Popowicz

    2010-02-01

    Full Text Available We consider the bi-Hamiltonian representation of the two-component coupled KdV equations discovered by Drinfel'd and Sokolov and rediscovered by Sakovich and Foursov. Connection of this equation with the supersymmetric Kadomtsev-Petviashvilli-Radul-Manin hierarchy is presented. For this new supersymmetric equation the Lax representation and odd Hamiltonian structure is given.

  8. The Qualitative Analysis of a Solution of a Series Maintenance System with Two Components

    Institute of Scientific and Technical Information of China (English)

    GUOWei-hua; YANGMing-zeng

    2003-01-01

    In this paper, firstly we study the series maintenance system with two components, obtain its exsistence and uniqueness of a dynamic state nonnegative solution by strongly continuous semigroups of operators theory. Then we prove that 0 is the eigenvalue of the system's host operators, and finally we study the eigenvector of the eigenvalue 0.

  9. A novel two-component system involved in secretion stress response in Streptomyces lividans.

    Directory of Open Access Journals (Sweden)

    Sonia Gullón

    Full Text Available BACKGROUND: Misfolded proteins accumulating outside the bacterial cytoplasmic membrane can interfere with the secretory machinery, hence the existence of quality factors to eliminate these misfolded proteins is of capital importance in bacteria that are efficient producers of secretory proteins. These bacteria normally use a specific two-component system to respond to the stress produced by the accumulation of the misfolded proteins, by activating the expression of HtrA-like proteases to specifically eliminate the incorrectly folded proteins. METHODOLOGY/PRINCIPAL FINDINGS: Overproduction of alpha-amylase in S. lividans causing secretion stress permitted the identification of a two-component system (SCO4156-SCO4155 that regulates three HtrA-like proteases which appear to be involved in secretion stress response. Mutants in each of the genes forming part of the two-genes operon that encodes the sensor and regulator protein components accumulated misfolded proteins outside the cell, strongly suggesting the involvement of this two-component system in the S. lividans secretion stress response. CONCLUSIONS/SIGNIFICANCE: To our knowledge this is the first time that a specific secretion stress response two-component system is found to control the expression of three HtrA-like protease genes in S. lividans, a bacterium that has been repeatedly used as a host for the synthesis of homologous and heterologous secretory proteins of industrial application.

  10. Impacts of photon bending on observational aspects of Two Component Advective Flow

    CERN Document Server

    Chatterjee, Arka

    2016-01-01

    Nature of photon trajectories in a curved spacetime around black holes are studied without constraining their motion to any plane. Impacts of photon bending are separately scrutinized for Keplerian and CENBOL components of Two Component Advective Flow (TCAF) model. Parameters like Red shift, Bolometric Flux, temperature profile and time of arrival of photons are also computed.

  11. The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis

    DEFF Research Database (Denmark)

    Bisicchia, Paola; Noone, David; Lioliou, Efthimia

    2007-01-01

    Adaptation of bacteria to the prevailing environmental and nutritional conditions is often mediated by two-component signal transduction systems (TCS). The Bacillus subtilis YycFG TCS has attracted special attention as it is essential for viability and its regulon is poorly defined. Here we show...

  12. Modeling Thermal Dust Emission with Two Components: Application to the Planck HFI Maps

    CERN Document Server

    Meisner, Aaron

    2014-01-01

    We apply the Finkbeiner et al. (1999) two-component thermal dust emission model to the Planck HFI maps. This parametrization of the far-infrared dust spectrum as the sum of two modified blackbodies serves as an important alternative to the commonly adopted single modified blackbody (MBB) dust emission model. Analyzing the joint Planck/DIRBE dust spectrum, we show that two-component models provide a better fit to the 100-3000 GHz emission than do single-MBB models, though by a lesser margin than found by Finkbeiner et al. (1999) based on FIRAS and DIRBE. We also derive full-sky 6.1' resolution maps of dust optical depth and temperature by fitting the two-component model to Planck 217-857 GHz along with DIRBE/IRAS 100 micron data. Because our two-component model matches the dust spectrum near its peak, accounts for the spectrum's flattening at millimeter wavelengths, and specifies dust temperature at 6.1' FWHM, our model provides reliable, high-resolution thermal dust emission foreground predictions from 100 to...

  13. Global dissipative solutions for the two-component Camassa-Holm shallow water system

    Directory of Open Access Journals (Sweden)

    Yujuan Wang

    2015-01-01

    Full Text Available This article presents a continuous semigroup of globally defined weak dissipative solutions for the two-component Camassa-Holm system. Such solutions are established by using a new approach based on characteristics a set of new variables overcoming the difficulties inherent in multi-component systems.

  14. Phase separation and dynamics of two-component Bose-Einstein condensates

    DEFF Research Database (Denmark)

    Lee, Kean Loon; Jørgensen, Nils Byg; Liu, I-Kang;

    2016-01-01

    The miscibility of two interacting quantum systems is an important testing ground for the understanding of complex quantum systems. Two-component Bose-Einstein condensates enable the investigation of this scenario in a particularly well controlled setting. In a homogeneous system, the transition...

  15. Phase of Two-Component Bose-Einstein Condensates with a Coupling Drive

    Institute of Scientific and Technical Information of China (English)

    YU Zhao-Xian; JIN Shuo; JIAO Zhi-Yong; WANG Ji-Suo

    2007-01-01

    By using the invariant theory, we study the phases of two-component Bose-Einstein condensates with a coupling drive under the case that the strength of the interatomic interaction in each condensate equals the interspecies interaction. The dynamical and geometric phases are presented respectively. The Aharonov-Anandan phase is also obtained under the cyclical evolution.

  16. The dynamics of nonstationary solutions in one-dimensional two-component Bose-Einstein condensates

    Institute of Scientific and Technical Information of China (English)

    Lü Bin-Bin; Hao Xue; Tian Qiang

    2011-01-01

    This paper investigates the dynamical properties of nonstationary solutions in one-dimensional two-component Bose-Einstein condensates. It gives three kinds of stationary solutions to this model and develops a general method of constructing nonstationary solutions. It obtains the unique features about general evolution and soliton evolution of nonstationary solutions in this model.

  17. Instabilities on crystal surfaces: The two-component body-centered solid-on-solid model

    NARCIS (Netherlands)

    Carlon, E.; van Beijeren, H.; Mazzeo, G.

    1996-01-01

    The free energy of crystal surfaces that can be described by the two-component body-centered solid-on-solid model has been calculated in a mean-field approximation. The system may model ionic crystals with a bcc lattice structure (for instance CsCl). Crossings between steps are energetically favored

  18. Geometric Integrability of Two-Component Camassa-Holm and Hunter-Saxton Systems

    Institute of Scientific and Technical Information of China (English)

    SONG Juu-Feng; QU Chang-Zheng

    2011-01-01

    It is shown that the two-component Camassa-Holm and Hunter-Saxton systems are geometrically integrable, namely they describe pseudo-spherical surfaces. As a consequence, their infinite number o, conservation laws are directly constructed. In addition, a class of nonlocal symmetries depending on the pseudo-potentials are obtained.

  19. Transport of a two-component mixture in one-dimensional channels

    NARCIS (Netherlands)

    Borman, VD; Tronin, VN; Tronin, [No Value; Troyan, [No Value

    2004-01-01

    The transport of a two-component gas mixture in subnanometer channels is investigated theoretically for an arbitrary filling of channels. Special attention is paid to consistent inclusion of density effects, which are associated both with the interaction and with a finite size of particles. The

  20. On Weak Regular *-semigroups

    Institute of Scientific and Technical Information of China (English)

    Yong Hua LI; Hai Bin KAN; Bing Jun YU

    2004-01-01

    In this paper, a special kind of partial algebras called projective partial groupoids is defined.It is proved that the inverse image of all projections of a fundamental weak regular *-semigroup under the homomorphism induced by the maximum idempotent-separating congruence of a weak regular *-semigroup has a projective partial groupoid structure. Moreover, a weak regular *-product which connects a fundamental weak regular *-semigroup with corresponding projective partial groupoid is defined and characterized. It is finally proved that every weak regular *-product is in fact a weak regular *-semigroup and any weak regular *-semigroup is constructed in this way.

  1. Geotail observations of temperature anisotropy of the two-component protons in the dusk plasma sheet

    Directory of Open Access Journals (Sweden)

    M. N. Nishino

    2007-03-01

    Full Text Available In search for clues towards the understanding of the cold plasma sheet formation under northward IMF, we study the temperature anisotropy of the two-component protons in the plasma sheet near the dusk low-latitude boundary observed by the Geotail spacecraft. The two-component protons result from mixing of the cold component from the solar wind and the hot component of the magnetospheric origin, and may be the most eloquent evidence for the transport process across the magnetopause. The cold component occasionally has a strong anisotropy in the dusk flank, and the sense of the anisotropy depends on the observed locations: the parallel temperature is enhanced in the tail flank while the perpendicular temperature is enhanced on the dayside. The hot component is nearly isotropic in the tail while the perpendicular temperature is enhanced on the dayside. We discuss possible mechanism that can lead to the observed temperature anisotropies.

  2. Trapping of two-component matter-wave solitons by mismatched optical lattices

    Energy Technology Data Exchange (ETDEWEB)

    Shi, Z.; Law, K.J.H. [Department of Mathematics and Statistics, University of Massachusetts, Amherst, MA 01003-4515 (United States); Kevrekidis, P.G. [Department of Mathematics and Statistics, University of Massachusetts, Amherst, MA 01003-4515 (United States)], E-mail: kevrekid@gmail.com; Malomed, B.A. [Department of Physical Electronics, School of Electrical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv 69978 (Israel)

    2008-05-26

    We consider a one-dimensional model of a two-component Bose-Einstein condensate in the presence of periodic external potentials of opposite signs, acting on the two species. The interaction between the species is attractive, while intra-species interactions may be attractive too [the system of the bright-bright (BB) type], or of opposite signs in the two components [the gap-bright (GB) type]. We identify the existence and stability domains for soliton complexes of the BB and GB types. The evolution of unstable solitons leads to the establishment of oscillatory states. The increase of the strength of the nonlinear attraction between the species results in symbiotic stabilization of the complexes, despite the fact that one component is centered around a local maximum of the respective periodic potential.

  3. An efficient implementation of two-component relativistic exact-decoupling methods for large molecules

    CERN Document Server

    Peng, Daoling; Weigend, Florian; Reiher, Markus

    2013-01-01

    We present an efficient algorithm for one- and two-component relativistic exact-decoupling calculations. The spin-orbit coupling was taken into account for the evaluation of relativistically transformed Hamiltonian. The relativistic decoupling transformation has to be evaluated with primitive functions so that the construction of the relativistic one-electron Hamiltonian becomes the bottleneck of the whole calculation for large molecules. We apply our recently developed local DLU scheme [J. Chem. Phys. 136 (2012) 244108] to accelerate this step. With our new implementation two-component relativistic density functional calculations can be performed invoking the resolution-of-identity density-fitting approximation and (Abelian as well as non-Abelian) point group symmetries to accelerate both the exact-decoupling and the two-electron part. The capability of our implementation is illustrated at the example of silver clusters with up to 309 atoms, for which the cohesive energy is calculated and extrapolated to the...

  4. Two-component Fermi-liquid theory - Equilibrium properties of liquid metallic hydrogen

    Science.gov (United States)

    Oliva, J.; Ashcroft, N. W.

    1981-01-01

    It is reported that the transition of condensed hydrogen from an insulating molecular crystal phase to a metallic liquid phase, at zero temperature and high pressure, appears possible. Liquid metallic hydrogen (LMH), comprising interpenetrating proton and electron fluids, would constitute a two-component Fermi liquid with both a very high component-mass ratio and long-range, species-dependent bare interactions. The low-temperature equilibrium properties of LMH are examined by means of a generalization to the case of two components of the phenomenological Landau Fermi-liquid theory, and the low-temperature specific heat, compressibility, thermal expansion coefficient and spin susceptibility are given. It is found that the specific heat and the thermal expansion coefficient are vastly greater in the liquid than in the corresponding solid, due to the presence of proton quasiparticle excitations in the liquid.

  5. Use of two-component signal transduction systems in the construction of synthetic genetic networks.

    Science.gov (United States)

    Ninfa, Alexander J

    2010-04-01

    Two-component signal transduction systems are a common type of signaling system in prokaryotes; the typical cell has dozens of systems regulating aspects of physiology and controlling responses to environmental conditions. In this review, I consider how these systems may be useful for engineering novel cell functions. Examples of successful incorporation of two-component systems into engineered systems are noted, and features of the systems that favor or hinder potential future use of these signaling systems for synthetic biology applications are discussed. The focus will be on the engineering of novel couplings of sensory functions to signaling outputs. Recent successes in this area are noted, such as the development of light-sensitive transmitter proteins and chemotactic receptors responsive to nitrate. Copyright 2010 Elsevier Ltd. All rights reserved.

  6. Two-component signal transduction system SaeRS positively regulates Staphylococcus epidermidis glucose metabolism.

    Science.gov (United States)

    Lou, Qiang; Qi, Yijun; Ma, Yuanfang; Qu, Di

    2014-01-01

    Staphylococcus epidermidis, which is a causative pathogen of nosocomial infection, expresses its virulent traits such as biofilm and autolysis regulated by two-component signal transduction system SaeRS. In this study, we performed a proteomic analysis of differences in expression between the S. epidermidis 1457 wild-type and saeRS mutant to identify candidates regulated by saeRS using two-dimensional gel electrophoresis (2-DE) combined with matrix-assisted laser desorption/lonization mass spectrometry (MALDI-TOF-MS). Of 55 identified proteins that significantly differed in expression between the two strains, 15 were upregulated and 40 were downregulated. The downregulated proteins included enzymes related to glycolysis and TCA cycle, suggesting that glucose is not properly utilized in S. epidermidis when saeRS was deleted. The study will be helpful for treatment of S. epidermidis infection from the viewpoint of metabolic modulation dependent on two-component signal transduction system SaeRS.

  7. Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction.

    Science.gov (United States)

    Casino, Patricia; Rubio, Vicente; Marina, Alberto

    2009-10-16

    The chief mechanism used by bacteria for sensing their environment is based on two conserved proteins: a sensor histidine kinase (HK) and an effector response regulator (RR). The signal transduction process involves highly conserved domains of both proteins that mediate autokinase, phosphotransfer, and phosphatase activities whose output is a finely tuned RR phosphorylation level. Here, we report the structure of the complex between the entire cytoplasmic portion of Thermotoga maritima class I HK853 and its cognate, RR468, as well as the structure of the isolated RR468, both free and BeF(3)(-) bound. Our results provide insight into partner specificity in two-component systems, recognition of the phosphorylation state of each partner, and the catalytic mechanism of the phosphatase reaction. Biochemical analysis shows that the HK853-catalyzed autokinase reaction proceeds by a cis autophosphorylation mechanism within the HK subunit. The results suggest a model for the signal transduction mechanism in two-component systems.

  8. A hydrodynamic scheme for two-component winds from hot stars

    CERN Document Server

    Votruba, V; Kubát, J; Rätzel, D

    2007-01-01

    We have developed a time-dependent two-component hydrodynamics code to simulate radiatively-driven stellar winds from hot stars. We use a time-explicit van Leer scheme to solve the hydrodynamic equations of a two-component stellar wind. Dynamical friction due to Coulomb collisions between the passive bulk plasma and the line-scattering ions is treated by a time-implicit, semi-analytic method using a polynomial fit to the Chandrasekhar function. This gives stable results despite the stiffness of the problem. This method was applied to model stars with winds that are both poorly and well-coupled. While for the former case we reproduce the mCAK solution, for the latter case our solution leads to wind decoupling.

  9. Atomic Tunneling Effect in Two-Component Bose-Einstein Condensates with a Coupling Drive

    Institute of Scientific and Technical Information of China (English)

    JIAOZhi-Yong; YUZhao-Xian; YANGXin-Jian

    2004-01-01

    In this paper, we have studied the atomic population difference and the atomic tunneling current of two-component Bose-Einstein condensates with a coupling drive. It is found that when the two-component Bose Einstein condensates are initially in the coherent states, the atomic population difference may exhibit the step structure, in which the numbers of the step increase with the decrease of the Rabi frequency and with the increment of the initial phase difference. The atomic population difference may exhibit collapses, and revivals, in which their periods are affected dramatically by the Rabi frequency and the initial phase difference. The atomic tunneling current may exhibit damping oscillation behaviors, and exist the step structure for the time range of 10-10 ~ 10-9 second.

  10. Two-component Fermi-liquid theory - Equilibrium properties of liquid metallic hydrogen

    Science.gov (United States)

    Oliva, J.; Ashcroft, N. W.

    1981-01-01

    It is reported that the transition of condensed hydrogen from an insulating molecular crystal phase to a metallic liquid phase, at zero temperature and high pressure, appears possible. Liquid metallic hydrogen (LMH), comprising interpenetrating proton and electron fluids, would constitute a two-component Fermi liquid with both a very high component-mass ratio and long-range, species-dependent bare interactions. The low-temperature equilibrium properties of LMH are examined by means of a generalization to the case of two components of the phenomenological Landau Fermi-liquid theory, and the low-temperature specific heat, compressibility, thermal expansion coefficient and spin susceptibility are given. It is found that the specific heat and the thermal expansion coefficient are vastly greater in the liquid than in the corresponding solid, due to the presence of proton quasiparticle excitations in the liquid.

  11. Engineering bacterial two-component system PmrA/PmrB to sense lanthanide ions.

    Science.gov (United States)

    Liang, Haihua; Deng, Xin; Bosscher, Mike; Ji, Quanjiang; Jensen, Mark P; He, Chuan

    2013-02-13

    The Salmonella PmrA/PmrB two-component system uses an iron(III)-binding motif on the cell surface to sense the environmental or host ferric level and regulate PmrA-controlled gene expression. We replaced the iron(III)-binding motif with a lanthanide-binding peptide sequence that is known to selectively recognize trivalent lanthanide ions. The newly engineered two-component system (PmrA/PmrB) can effectively sense lanthanide ion and regulate gene expression in E. coli . This work not only provides the first known lanthanide-based sensing and response in live cells but also demonstrates that the PmrA/PmrB system is a suitable template for future synthetic biology efforts to construct bacteria that can sense and respond to other metal ions in remediation or sequestration.

  12. Error Propagation in Equations for Geochemical Modeling of Radiogenic Isotopes in Two-Component Mixing

    Indian Academy of Sciences (India)

    Surendra P Verma

    2000-03-01

    This paper presents error propagation equations for modeling of radiogenic isotopes during mixing of two components or end-members. These equations can be used to estimate errors on an isotopic ratio in the mixture of two components, as a function of the analytical errors or the total errors of geological field sampling and analytical errors. Two typical cases (``Small errors'' and ``Large errors'') are illustrated for mixing of Sr isotopes. Similar examples can be formulated for the other radiogenic isotopic ratios. Actual isotopic data for sediment and basalt samples from the Cocos plate are also included to further illustrate the use of these equations. The isotopic compositions of the predicted mixtures can be used to constrain the origin of magmas in the central part of the Mexican Volcanic Belt. These examples show the need of high quality experimental data for them to be useful in geochemical modeling of magmatic processes.

  13. A two-component Frenkel-Kontorowa model for surface alloy formation

    CERN Document Server

    Daruka, I

    2003-01-01

    It has been shown by recent experiments that bulk immiscible metals (e.g. Ag/Cu, Ag/Co and Au/Ni) can form binary alloys on certain surfaces where the substrate mediates the elastic misfits between the two components, thus relieving the elastic strain in the overlayer. These novel surface alloys exhibit a rich phase structure. We formulate a two-component Frenkel-Kontorova model in one dimension to study surface alloy formation. This model can naturally incorporate dislocation formation that plays a crucial role in determining the actual structure of the system. Using energy minimization calculations we provide a phase diagram in terms of average alloy composition and the energy of mixing. Monte Carlo simulations were also performed to study the structure and interaction of the emerging dislocations.

  14. A hybrid two-component Bose–Einstein condensate interferometer for measuring magnetic field gradients

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Fei [Key Laboratory of Fiber Optic Sensing Technology and Information Processing, Ministry of Education, Wuhan University of Technology, Wuhan 430070 (China); Huang, Jiahao, E-mail: hjiahao@mail2.sysu.edu.cn [TianQin Research Center & School of Physics and Astronomy, Sun Yat-Sen University, SYSU Zhuhai Campus, Zhuhai 519082 (China); Liu, Quan [Key Laboratory of Fiber Optic Sensing Technology and Information Processing, Ministry of Education, Wuhan University of Technology, Wuhan 430070 (China)

    2017-03-03

    Highlights: • A scheme for detecting magnetic field gradients via a double-well two-component Bose–Einstein condensate interferometer. • The magnetic field gradient can be extracted by either the spin population or the external state. • Our proposal is potentially sensitive to weak magnetic field inhomogeneity due to its small sensor size. - Abstract: We have proposed a scheme to detect magnetic field gradients via an interferometer based on a double-well two-component Bose–Einstein condensate (BEC). Utilizing a sequence of quantum control operations on both external and internal degree of the BEC, one can extract the magnetic field gradients by measuring either the population in one component or the fidelity between the final external state and the initial ground state. Our scheme can be implemented by current experimental techniques of manipulating ultracold atoms.

  15. Kinetics and mechanism of the oxidation process of two-component Fe-Al alloys

    Science.gov (United States)

    Przewlocka, H.; Siedlecka, J.

    1982-01-01

    The oxidation process of two-component Fe-Al alloys containing up to 7.2% Al and from 18 to 30% Al was studied. Kinetic measurements were conducted using the isothermal gravimetric method in the range of 1073-1223 K and 1073-1373 K for 50 hours. The methods used in studies of the mechanism of oxidation included: X-ray microanalysis, X-ray structural analysis, metallographic analysis and marker tests.

  16. In vivo study of the two-component signaling network in Escherichia coli

    OpenAIRE

    Sommer, Erik

    2012-01-01

    Microorganisms commonly use ‘two-component’ signaling systems for sensing environmental conditions, with members being present in nearly all bacterial and archaeal genomes in different numbers. Prototypical two-component systems are comprised of a sensory histidine kinase and a response regulator protein that is phosphorylated by the kinase. The regulator typically acts as a transcription factor regulating gene expression. Due to their prevalence in microorganisms, a basic understanding of th...

  17. Using structural information to change the phosphotransfer specificity of a two-component chemotaxis signalling complex.

    Directory of Open Access Journals (Sweden)

    Christian H Bell

    2010-02-01

    Full Text Available Two-component signal transduction pathways comprising histidine protein kinases (HPKs and their response regulators (RRs are widely used to control bacterial responses to environmental challenges. Some bacteria have over 150 different two-component pathways, and the specificity of the phosphotransfer reactions within these systems is tightly controlled to prevent unwanted crosstalk. One of the best understood two-component signalling pathways is the chemotaxis pathway. Here, we present the 1.40 A crystal structure of the histidine-containing phosphotransfer domain of the chemotaxis HPK, CheA(3, in complex with its cognate RR, CheY(6. A methionine finger on CheY(6 that nestles in a hydrophobic pocket in CheA(3 was shown to be important for the interaction and was found to only occur in the cognate RRs of CheA(3, CheY(6, and CheB(2. Site-directed mutagenesis of this methionine in combination with two adjacent residues abolished binding, as shown by surface plasmon resonance studies, and phosphotransfer from CheA(3-P to CheY(6. Introduction of this methionine and an adjacent alanine residue into a range of noncognate CheYs, dramatically changed their specificity, allowing protein interaction and rapid phosphotransfer from CheA(3-P. The structure presented here has allowed us to identify specificity determinants for the CheA-CheY interaction and subsequently to successfully reengineer phosphotransfer signalling. In summary, our results provide valuable insight into how cells mediate specificity in one of the most abundant signalling pathways in biology, two-component signal transduction.

  18. Two-component model of the interaction of an interstellar cloud with surrounding hot plasma

    OpenAIRE

    Provornikova, E. A.; Izmodenov, V. V.; Lallement, R.

    2011-01-01

    We present a two-component gasdynamic model of an interstellar cloud embedded in a hot plasma. It is assumed that the cloud consists of atomic hydrogen gas, interstellar plasma is quasineutral. Hydrogen atoms and plasma protons interact through a charge exchange process. Magnetic felds and radiative processes are ignored in the model. The influence of heat conduction within plasma on the interaction between a cloud and plasma is studied. We consider the extreme case and assume that hot plasma...

  19. General aspects of two-component regulatory circuits in bacteria: Domains, signals and roles.

    Science.gov (United States)

    Padilla-Vaca, Felipe; Mondragón-Jaimes, Verónica; Franco, Bernardo

    2016-08-09

    All living organisms are subject to changing environments, which must be sensed in order to respond swiftly and efficiently. Two-component systems (TCS) are signal transduction regulatory circuits based typically on a membrane bound sensor kinase and a cytoplasmic response regulator, that is activated through a histidine to aspartate phosphorelay reactions. Activated response regulator acts usually as a transcription factor. The best known examples were identified in bacteria, but they are also found in fungi, algae and plants. Thus far, they are not found in mammals. Regulatory circuits coupled to two-component systems exhibit a myriad of responses to environmental stimuli such as: redox potential, pH, specific metabolites, pressure, light and more recently to specific antimicrobial peptides that activate a sensor kinase responsible for expressing virulence factors through the active response regulator. In this review we explore general aspects on two-component systems that ultimately can play a role on virulence regulation, also the intriguing domain properties of the sensor kinases that can be a potential target for antimicrobial compounds. Only a handful of sensor kinases are extensively characterized, the vast majority belong to what we call 'the dark matter of bacterial signal transduction' since no known signal, structure and biochemical properties are available. Regulatory circuits from vertebrate pathogenic organisms can explain virulence in terms of either response to environmental factors or specific niche occupancy. Hopefully, knowledge on these signal transduction systems can lead to identify novel molecules that target two-component systems, since the increase of drug resistant microorganisms is worrisome.

  20. Histidine Phosphotransfer Proteins in Fungal Two-Component Signal Transduction Pathways

    OpenAIRE

    2013-01-01

    The histidine phosphotransfer (HPt) protein Ypd1 is an important participant in the Saccharomyces cerevisiae multistep two-component signal transduction pathway and, unlike the expanded histidine kinase gene family, is encoded by a single gene in nearly all model and pathogenic fungi. Ypd1 is essential for viability in both S. cerevisiae and in Cryptococcus neoformans. These and other aspects of Ypd1 biology, combined with the availability of structural and mutational data in S. cerevisiae, s...

  1. Stability properties of vector solitons in two-component Bose-Einstein condensates with tunable interactions

    Institute of Scientific and Technical Information of China (English)

    Zhang Xiao-Fei; Zhang Pei; He Wan-Quan; Liu Xun-Xu

    2011-01-01

    By using a unified theory of the formation of various types of vector-solitons in two-component Bose-Einstein condensates with tunable interactions, we obtain a family of exact vector-soliton solutions for the coupled nonlinear Schr(o)dinger equations. Moreover, the Bogoliubov equation shows that there exists stable dark soliton in specific situations. Our results open up new ways in considerable experimental interest for the quantum control of multi-component Bose-Einstein condensates.

  2. Bloch Oscillations of Two-Component Bose-Einstein Condensates in Optical Lattices

    Institute of Scientific and Technical Information of China (English)

    GU Huai-Qiang; WANG Zhi-Cheng; JIN Kang; TAN Lei

    2006-01-01

    @@ We study the Bloch oscillations of two-component Bose-Einstein condensates trapped in spin-dependent optical lattices. The influence of the intercomponent atom interaction on the system is discussed in detail Accelerated breakdown of the Bloch oscillations and revival phenomena are found respectively for the repulsive and attractive case. For both the cases, the system will finally be set in a quantum self-trapping state due to dynamical instability.

  3. The CpxRA two-component system is essential for Citrobacter rodentium virulence.

    Science.gov (United States)

    Thomassin, Jenny-Lee; Giannakopoulou, Natalia; Zhu, Lei; Gross, Jeremy; Salmon, Kristiana; Leclerc, Jean-Mathieu; Daigle, France; Le Moual, Hervé; Gruenheid, Samantha

    2015-05-01

    Citrobacter rodentium is a murine intestinal pathogen used as a model for the foodborne human pathogens enterohemorrhagic Escherichia coli and enteropathogenic E. coli. During infection, these pathogens use two-component signal transduction systems to detect and adapt to changing environmental conditions. In E. coli, the CpxRA two-component signal transduction system responds to envelope stress by modulating the expression of a myriad of genes. Quantitative real-time PCR showed that cpxRA was expressed in the colon of C57BL/6J mice infected with C. rodentium. To determine whether CpxRA plays a role during C. rodentium infection, a cpxRA deletion strain was generated and found to have a colonization defect during infection. This defect was independent of an altered growth rate or a defective type III secretion system, and single-copy chromosomal complementation of cpxRA restored virulence. The C. rodentium strains were then tested in C3H/HeJ mice, a lethal intestinal infection model. Mice infected with the ΔcpxRA strain survived infection, whereas mice infected with the wild-type or complemented strains succumbed to infection. Furthermore, we found that the cpxRA expression level was higher during early infection than at a later time point. Taken together, these data demonstrate that the CpxRA two-component signal transduction system is essential for the in vivo virulence of C. rodentium. In addition, these data suggest that fine-tuned cpxRA expression is important for infection. This is the first study that identifies a C. rodentium two-component transduction system required for pathogenesis. This study further indicates that CpxRA is an interesting target for therapeutics against enteric pathogens.

  4. A Possible Two-Component Structure of the Non-Perturbative Pomeron

    CERN Document Server

    Gauron, P; Gauron, Pierre; Nicolescu, Basarab

    2000-01-01

    We propose a QCD-inspired two-component Pomeron form which gives an excellent description of the proton-proton, pi-proton, kaon-proton, gamma-proton and gamma-gamma total cross sections. Our fit has a better CHI2/dof for a smaller number of parameters as compared with the PDG fit. Our 2-Pomeron form is fully compatible with weak Regge exchange-degeneracy, universality, Regge factorization and the generalized vector dominance model.

  5. Different electronic charges in two-component superconductor by coherent state

    Energy Technology Data Exchange (ETDEWEB)

    Shi, Xuguang, E-mail: shixg@bjfu.edu.cn

    2015-07-17

    Recently, the different electronic charges, which are related to the different coupling constants with magnetic field, in the two-component superconductor have been studied in the frame of Ginzburg–Landau theory. In order to study the electronic charges in detail we suggest the wave function in the two-component superconductor to be in the coherent state. We find the different electronic charges exist not only in the coherent state but also in the incoherent state. But the ratio of the different charges in the coherent state is different from the ratio in the incoherence. The expressions of the coupling constants are given directly based on the coherence effects. We also discuss the winding number in such a system. - Highlights: • Suggest the wave function in two-component superconductor is coherent. • Interpret the existence of different electric charges by the coherent states. • Derive a new expression for the supercurrent. • Reveal the relation between different electric charges and winding number.

  6. Sub classification and targeted characterization of prophage-encoded two-component cell lysis cassette

    Indian Academy of Sciences (India)

    K V Srividhya; S Krishnaswamy

    2007-08-01

    Bacteriophage induced lysis of host bacterial cell is mediated by a two component cell lysis cassette comprised of holin and lysozyme. Prophages are integrated forms of bacteriophages in bacterial genomes providing a repertoire for bacterial evolution. Analysis using the prophage database (http://bicmku.in:8082) constructed by us showed 47 prophages were associated with putative two component cell lysis genes. These proteins cluster into four different subgroups. In this process, a putative holin (essd) and endolysin (ybcS), encoded by the defective lambdoid prophage DLP12 was found to be similar to two component cell lysis genes in functional bacteriophages like p21 and P1. The holin essd was found to have a characteristic dual start motif with two transmembrane regions and C-terminal charged residues as in class II holins. Expression of a fusion construct of essd in Escherichia coli showed slow growth. However, under appropriate conditions, this protein could be over expressed and purified for structure function studies. The second component of the cell lysis cassette, ybcS, was found to have an N-terminal SAR (Signal Arrest Release) transmembrane domain. The construct of ybcS has been over expressed in E. coli and the purified protein was functional, exhibiting lytic activity against E. coli and Salmonella typhi cell wall substrate. Such targeted sequence-structure-function characterization of proteins encoded by cryptic prophages will help understand the contribution of prophage proteins to bacterial evolution.

  7. Design of Novel Mixer and Applicator for Two-Component Surgical Adhesives

    Science.gov (United States)

    Go, Kevin; Kim, Yeong; Lee, Andy H.; Staricha, Kelly; Messersmith, Phillip; Glucksberg, Matthew

    2015-01-01

    Current mixer and applicator devices on the market are not able to properly and efficiently mix two-component surgical adhesives in small volumes necessary to achieve economic viability. Furthermore, in these devices a significant amount of adhesive is wasted during the application process, as material within the dead space of the mixing chamber must be discarded. We have designed and demonstrated a new active mixer and applicator system capable of rapidly and efficiently mixing two components of an adhesive and applying it to the surgical site. Recently, Messersmith et al. have developed a tissue adhesive inspired by the mussel byssus and have shown that it is effective as a surgical sealant, and is especially suited for wet environments such as in fetal surgery. Like some other tissue sealants, this one requires that two components of differing viscosities be thoroughly mixed within a specified and short time period. Through a combination of compression and shear testing, we demonstrated that our device could effectively mix the adhesive developed by Messersmith et al. and improve its shear strength to significantly higher values than what has been reported for vortex mixing. Overall, our mixer and applicator system not only has potential applications in mixing and applying various adhesives in multiple surgical fields but also makes this particular adhesive viable for clinical use. PMID:26421090

  8. Real time propagation of the exact two component time-dependent density functional theory

    Science.gov (United States)

    Goings, Joshua J.; Kasper, Joseph M.; Egidi, Franco; Sun, Shichao; Li, Xiaosong

    2016-09-01

    We report the development of a real time propagation method for solving the time-dependent relativistic exact two-component density functional theory equations (RT-X2C-TDDFT). The method is fundamentally non-perturbative and may be employed to study nonlinear responses for heavy elements which require a relativistic Hamiltonian. We apply the method to several group 12 atoms as well as heavy-element hydrides, comparing with the extensive theoretical and experimental studies on this system, which demonstrates the correctness of our approach. Because the exact two-component Hamiltonian contains spin-orbit operators, the method is able to describe the non-zero transition moment of otherwise spin-forbidden processes in non-relativistic theory. Furthermore, the two-component approach is more cost effective than the full four-component approach, with similar accuracy. The RT-X2C-TDDFT will be useful in future studies of systems containing heavy elements interacting with strong external fields.

  9. Bioinformatics analysis of two-component regulatory systems in Staphylococcus epidermidis

    Institute of Scientific and Technical Information of China (English)

    QIN Zhiqiang; ZHONG Yang; ZHANG Jian; HE Youyu; WU Yang; JIANG Juan; CHEN Jiemin; LUO Xiaomin; QU Di

    2004-01-01

    Sixteen pairs of two-component regulatory systems are identified in the genome of Staphylococcus epidermidis ATCC12228 strain, which is newly sequenced by our laboratory for Medical Molecular Virology and Chinese National Human Genome Center at Shanghai, by using bioinformatics analysis. Comparative analysis of the twocomponent regulatory systems in S. epidermidis and that of S.aureus and Bacillus subtilis shows that these systems may regulate some important biological functions, e.g. growth,biofilm formation, and expression of virulence factors in S.epidermidis. Two conserved domains, i.e. HATPase_c and REC domains, are found in all 16 pairs of two-component proteins.Homologous modelling analysis indicates that there are 4similar HATPase_c domain structures of histidine kinases and 13 similar REC domain structures of response regulators,and there is one AMP-PNP binding pocket in the HATPase_c domain and three active aspartate residues in the REC domain. Preliminary experiment reveals that the bioinformatics analysis of the conserved domain structures in the two-component regulatory systems in S. epidermidis may provide useful information for discovery of potential drug target.

  10. REGULARITY CRITERIA FOR WEAK SOLUTION TO THE 3D MAGNETOHYDRODYNAMIC EQUATIONS

    Institute of Scientific and Technical Information of China (English)

    Wang Yuzhu; Wang Shubin; Wang Yinxia

    2012-01-01

    In this article,regularity criteria for the 3D magnetohydrodynamic equations are investigated.Some sufficient integrability conditions on two components or the gradient of two components of u + B and u - B in Morrey-Campanato spaces are obtained.

  11. NOETHERIAN GR-REGULAR RINGS ARE REGULAR

    Institute of Scientific and Technical Information of China (English)

    LIHUISHI

    1994-01-01

    It is proved that for a left Noetherian z-graded ring A,if every finitely generated graded A-module has finite projective dimension(i.e-,A is gr-regular)then every finitely generated A-module has finite projective dimension(i.e.,A is regular).Some applications of this result to filtered rings and some classical cases are also given.

  12. Diversity of two-component systems: insights into the signal transduction mechanism by the  Staphylococcus aureus two-component system GraSR.

    Science.gov (United States)

    Muzamal, Uzma; Gomez, Daniel; Kapadia, Fenika; Golemi-Kotra, Dasantila

    2014-01-01

    The response to cationic antimicrobial peptides (CAMPs) in Staphylococcus aureus relies on a two-component system (TCS), GraSR, an auxiliary protein GraX and an ATP-binding cassette (ABC) transporter, VraF/G. To understand the signal transduction mechanism by GraSR, we investigated the kinase activity of the cytoplasmic domain of histidine kinase GraS and the interaction with its cognate response regulator GraR. We also investigated interactions among the auxiliary protein GraX, GraS/R and the ATPase protein of the ABC transporter, VraF. We found that GraS lacks autophosphorylation activity, unlike a similar histidine kinase, BceS, of Bacillus subtilis. In addition, the interaction between GraS and GraR is very weak in comparison to the stronger interaction observed between BceS and its conjugated response regulator, BceR, suggesting that CAMP signaling may not flow directly from GraS to GraR. We found that the auxiliary protein GraX interacts with VraF and GraR, and requires the histidine phosphotransfer and dimerization domain of GraS to interact with this protein. Further, VraF requires the GraS region that connects the membrane-bound domain with the cytoplasmic domain of this protein for interaction with GraS. The interactions of GraX with GraS/R and VraF indicate that GraX may serve as a scaffold to bring these proteins in close proximity to GraS, plausibly to facilitate activation of GraS to ultimately transduce the signal to GraR.

  13. Predictions of Phase Distribution in Liquid-Liquid Two-Component Flow

    Science.gov (United States)

    Wang, Xia; Sun, Xiaodong; Duval, Walter M.

    2011-06-01

    Ground-based liquid-liquid two-component flow can be used to study reduced-gravity gas-liquid two-phase flows provided that the two liquids are immiscible with similar densities. In this paper, we present a numerical study of phase distribution in liquid-liquid two-component flows using the Eulerian two-fluid model in FLUENT, together with a one-group interfacial area transport equation (IATE) that takes into account fluid particle interactions, such as coalescence and disintegration. This modeling approach is expected to dynamically capture changes in the interfacial structure. We apply the FLUENT-IATE model to a water-Therminol 59® two-component vertical flow in a 25-mm inner diameter pipe, where the two liquids are immiscible with similar densities (3% difference at 20°C). This study covers bubbly (drop) flow and bubbly-to-slug flow transition regimes with area-averaged void (drop) fractions from 3 to 30%. Comparisons of the numerical results with the experimental data indicate that for bubbly flows, the predictions of the lateral phase distributions using the FLUENT-IATE model are generally more accurate than those using the model without the IATE. In addition, we demonstrate that the coalescence of fluid particles is dominated by wake entrainment and enhanced by increasing either the continuous or dispersed phase velocity. However, the predictions show disagreement with experimental data in some flow conditions for larger void fraction conditions, which fall into the bubbly-to-slug flow transition regime. We conjecture that additional fluid particle interaction mechanisms due to the change of flow regimes are possibly involved.

  14. Specificity residues determine binding affinity for two-component signal transduction systems.

    Science.gov (United States)

    Willett, Jonathan W; Tiwari, Nitija; Müller, Susanne; Hummels, Katherine R; Houtman, Jon C D; Fuentes, Ernesto J; Kirby, John R

    2013-11-05

    Two-component systems (TCS) comprise histidine kinases and their cognate response regulators and allow bacteria to sense and respond to a wide variety of signals. Histidine kinases (HKs) phosphorylate and dephosphorylate their cognate response regulators (RRs) in response to stimuli. In general, these reactions appear to be highly specific and require an appropriate association between the HK and RR proteins. The Myxococcus xanthus genome encodes one of the largest repertoires of signaling proteins in bacteria (685 open reading frames [ORFs]), including at least 127 HKs and at least 143 RRs. Of these, 27 are bona fide NtrC-family response regulators, 21 of which are encoded adjacent to their predicted cognate kinases. Using system-wide profiling methods, we determined that the HK-NtrC RR pairs display a kinetic preference during both phosphotransfer and phosphatase functions, thereby defining cognate signaling systems in M. xanthus. Isothermal titration calorimetry measurements indicated that cognate HK-RR pairs interact with dissociation constants (Kd) of approximately 1 µM, while noncognate pairs had no measurable binding. Lastly, a chimera generated between the histidine kinase, CrdS, and HK1190 revealed that residues conferring phosphotransfer and phosphatase specificity dictate binding affinity, thereby establishing discrete protein-protein interactions which prevent cross talk. The data indicate that binding affinity is a critical parameter governing system-wide signaling fidelity for bacterial signal transduction proteins. Using in vitro phosphotransfer and phosphatase profiling assays and isothermal titration calorimetry, we have taken a system-wide approach to demonstrate specificity for a family of two-component signaling proteins in Myxococcus xanthus. Our results demonstrate that previously identified specificity residues dictate binding affinity and that phosphatase specificity follows phosphotransfer specificity for cognate HK-RR pairs. The data

  15. A novel two-component system involved in the transition to secondary metabolism in Streptomyces coelicolor.

    Directory of Open Access Journals (Sweden)

    Daniel Rozas

    Full Text Available BACKGROUND: Bacterial two-component signal transduction regulatory systems are the major set of signalling proteins frequently mediating responses to changes in the environment. They typically consist of a sensor, a membrane-associated histidine kinase and a cytoplasmic response regulator. The membrane-associated sensor detects the environmental signal or stress, whereas the cytoplasmic regulatory protein controls the cellular response usually by gene transcription modulation. METHODOLOGY/PRINCIPALFINDINGS: The Streptomyces coelicolor two genes operon SCO5784-SCO5785 encodes a two-component system, where SCO5784 encodes a histidine-kinase sensor and SCO5785 encodes a response regulator protein. When the expression level of the regulator gene decreases, the antibiotic synthesis and sporulation is delayed temporarily in addition to some ribosomal genes became up regulated, whereas the propagation of the regulatory gene in high copy number results in the earlier synthesis of antibiotics and sporulation, as well as the down regulation of some ribosomal genes and, moreover, in the overproduction of several extracellular proteins. Therefore, this two-component system in S. coelicolor seems to influence various processes characterised by the transition from primary to secondary metabolism, as determined by proteomic and transcriptomic analyses. CONCLUSIONS/SIGNIFICANCE: Propagation of SCO5785 in multicopy enhances the production of antibiotics as well as secretory proteins. In particular, the increase in the expression level of secretory protein encoding genes, either as an artefactual or real effect of the regulator, could be of potential usefulness when using Streptomyces strains as hosts for homologous or heterologous extracellular protein production.

  16. Analytical solution and meaning of feasible regions in two-component three-way arrays.

    Science.gov (United States)

    Omidikia, Nematollah; Abdollahi, Hamid; Kompany-Zareh, Mohsen; Rajkó, Róbert

    2016-10-01

    Although many efforts have been directed to the development of approximation methods for determining the extent of feasible regions in two- and three-way data sets; analytical determination (i.e. using only finite-step direct calculation(s) instead of the less exact numerical ones) of feasible regions in three-way arrays has remained unexplored. In this contribution, an analytical solution of trilinear decomposition is introduced which can be considered as a new direct method for the resolution of three-way two-component systems. The proposed analytical calculation method is applied to the full rank three-way data array and arrays with rank overlap (a type of rank deficiency) loadings in a mode. Close inspections of the analytically calculated feasible regions of rank deficient cases help us to make clearer the information gathered from multi-way problems frequently emerged in physics, chemistry, biology, agricultural, environmental and clinical sciences, etc. These examinations can also help to answer, e.g., the following practical question: "Is two-component three-way data with proportional loading in a mode actually a three-way data array?" By the aid of the additional information resulted from the investigated feasible regions of two-component three-way data arrays with proportional profile in a mode, reasons for the inadequacy of the seemingly trilinear data treatment methods published in the literature (e.g., U-PLS/RBL-LD that was used for extraction of quantitative and qualitative information reported by Olivieri et al. (Anal. Chem. 82 (2010) 4510-4519)) could be completely understood.

  17. Regular Expression Pocket Reference

    CERN Document Server

    Stubblebine, Tony

    2007-01-01

    This handy little book offers programmers a complete overview of the syntax and semantics of regular expressions that are at the heart of every text-processing application. Ideal as a quick reference, Regular Expression Pocket Reference covers the regular expression APIs for Perl 5.8, Ruby (including some upcoming 1.9 features), Java, PHP, .NET and C#, Python, vi, JavaScript, and the PCRE regular expression libraries. This concise and easy-to-use reference puts a very powerful tool for manipulating text and data right at your fingertips. Composed of a mixture of symbols and text, regular exp

  18. Design principles in two component systems and his-asp phosphorelays

    OpenAIRE

    Salvadó López, Baldiri

    2016-01-01

    L’objectiu d’aquesta tesi és trobar principis generals que permetin relacionar l’estructura i les propietats funcionals dels circuits moleculars de transducció de senyals two-component systems (TCS) i his-asp phosphorelays (PR). La tesi s’inicia revisant els mètodes usats per a l’estudi de principis de disseny en sistemes moleculars i alguns dels resultats obtinguts fins ara, i discutint la importància de l’estudi dels principis de disseny. A continuació, explorem els proteomes seqüenc...

  19. On the inspection policy of a two-component parallel system with failure interaction

    Energy Technology Data Exchange (ETDEWEB)

    Zequeira, Romulo I. [ISTIT, Equipe Modelisation et Surete des Systemes, Universite de Technologie de Troyes, 12 Rue Marie Curie, BP 2060, 10010 Troyes Cedex (France)]. E-mail: romulo.zequeira@utt.fr; Berenguer, Christophe [ISTIT, Equipe Modelisation et Surete des Systemes, Universite de Technologie de Troyes, 12 Rue Marie Curie, BP 2060, 10010 Troyes Cedex (France)]. E-mail: christophe.berenguer@utt.fr

    2005-04-01

    In this paper we study a two-component standby system which can successfully operate upon a demand if at least one component is not failed. We assume that failures can be detected only by periodic inspections. We consider that the failure of one component can modify the (conditional) failure probability of the component still alive with probability p and do not interact with probability 1-p. For that failure interaction scheme we obtain the system reliability function for the case of staggered inspections. We compare staggered and non-staggered inspections through numerical examples considering constant hazard rates.

  20. Optimization and control of two-component radially self-accelerating beams

    Energy Technology Data Exchange (ETDEWEB)

    Vetter, Christian; Eichelkraut, Toni; Ornigotti, Marco; Szameit, Alexander [Institute of Applied Physics, Abbe Center of Photonics, Friedrich-Schiller-Universität Jena, Albert-Einstein-Str. 15, 07745 Jena (Germany)

    2015-11-23

    We report on the properties of radially self-accelerating intensity distributions consisting of two components in the angular frequency domain. We show how this subset of solutions, in literature also known as helicon beams, possesses peculiar characteristics that enable a better control over its properties. In this work, we present a step-by-step optimization procedure to achieve the best possible intensity contrast, a distinct rotation rate and long propagation lengths. All points are discussed on a theoretical basis and are experimentally verified.

  1. Modulational instability for a self-attractive two-component Bose-Einstein condensate

    Institute of Scientific and Technical Information of China (English)

    Li Sheng-Chang; Duan Wen-Shan

    2009-01-01

    By means of the multiple-scale expansion method, the coupled nonlinear Schr(o)dinger equations without an explicit external potential are obtained in two-dimensional geometry for a self-attractive Bose-Einstein condensate composed of different hyperfine states. The modulational instability of two-component condensate is investigated by using a simple technique. Based on the discussion about two typical cases, the explicit expression of the growth rate for a purely growing modulational instability and the optimum stable conditions are given and analysed analytically. The results show that the modulational instability of this two-dimensional system is quite different from that in a one-dimensional system.

  2. Mapping the Two-Component Atomic Fermi Gas to the Nuclear Shell-Model

    DEFF Research Database (Denmark)

    Özen, C.; Zinner, Nikolaj Thomas

    2014-01-01

    The physics of a two-component cold fermi gas is now frequently addressed in laboratories. Usually this is done for large samples of tens to hundreds of thousands of particles. However, it is now possible to produce few-body systems (1-100 particles) in very tight traps where the shell structure...... of the external potential becomes important. A system of two-species fermionic cold atoms with an attractive zero-range interaction is analogous to a simple model of nucleus in which neutrons and protons interact only through a residual pairing interaction. In this article, we discuss how the problem of a two...

  3. A hybrid two-component Bose-Einstein condensate interferometer for measuring magnetic field gradients

    Science.gov (United States)

    Xu, Fei; Huang, Jiahao; Liu, Quan

    2017-03-01

    We have proposed a scheme to detect magnetic field gradients via an interferometer based on a double-well two-component Bose-Einstein condensate (BEC). Utilizing a sequence of quantum control operations on both external and internal degree of the BEC, one can extract the magnetic field gradients by measuring either the population in one component or the fidelity between the final external state and the initial ground state. Our scheme can be implemented by current experimental techniques of manipulating ultracold atoms.

  4. Topological phases of two-component bosons in species-dependent artificial gauge potentials

    Science.gov (United States)

    Wu, Ying-Hai; Shi, Tao

    2016-08-01

    We study bosonic atoms with two internal states in artificial gauge potentials whose strengths are different for the two components. A series of topological phases for such systems is proposed using the composite fermion theory and the parton construction. It is found in exact diagonalization that some of the proposed states may be realized for simple contact interaction between bosons. The ground states and low-energy excitations of these states are modeled using trial wave functions. The effective field theories for these states are also constructed and reveal some interesting properties.

  5. Mapping the Two-Component Atomic Fermi Gas to the Nuclear Shell-Model

    DEFF Research Database (Denmark)

    Özen, C.; Zinner, Nikolaj Thomas

    2014-01-01

    of the external potential becomes important. A system of two-species fermionic cold atoms with an attractive zero-range interaction is analogous to a simple model of nucleus in which neutrons and protons interact only through a residual pairing interaction. In this article, we discuss how the problem of a two......-component atomic fermi gas in a tight external trap can be mapped to the nuclear shell model so that readily available many-body techniques in nuclear physics, such as the Shell Model Monte Carlo (SMMC) method, can be directly applied to the study of these systems. We demonstrate an application of the SMMC method...

  6. Numerical simulation of two-component flow fluid - fluid in the microchannel T- type

    Directory of Open Access Journals (Sweden)

    Shebeleva A.A.

    2015-01-01

    Full Text Available Results of testing methodology for calculating two-phase flows based on the method of fluid in the cells (VOF method, and the procedure for CSF accounting of surface tension forces in the microchannel are considered in the work. Mathematical modeling of two-component flow fluid -fluid in the T- microchannel conducted using this methodology. The following flow regimes studied slug flow, rivulet flow, parallel flow, dispersed (droplet flow, plug flow. Comparison of numerical results with experimental data done. Satisfactory agreement between the calculated values with the experimental data obtained.

  7. Two-component systems and their co-option for eukaryotic signal transduction.

    Science.gov (United States)

    Schaller, G Eric; Shiu, Shin-Han; Armitage, Judith P

    2011-05-10

    Two-component signaling pathways involve histidine kinases, response regulators, and sometimes histidine-containing phosphotransfer proteins. Prevalent in prokaryotes, these signaling elements have also been co-opted to meet the needs of signal transduction in eukaryotes such as fungi and plants. Here we consider the evolution of such regulatory systems, with a particular emphasis on the roles they play in signaling by the plant hormones cytokinin and ethylene, in phytochrome-mediated perception of light, and as integral components of the circadian clock. Copyright © 2011 Elsevier Ltd. All rights reserved.

  8. Periodic and Solitary Wave Solutions of Two Component Zakharov-Yajima-Oikawa System, Using Madelung's Approach

    Directory of Open Access Journals (Sweden)

    Anca Visinescu

    2011-04-01

    Full Text Available Using the multiple scales method, the interaction between two bright and one dark solitons is studied. Provided that a long wave-short wave resonance condition is satisfied, the two-component Zakharov-Yajima-Oikawa (ZYO completely integrable system is obtained. By using a Madelung fluid description, the one-soliton solutions of the corresponding ZYO system are determined. Furthermore, a discussion on the interaction between one bright and two dark solitons is presented. In particular, this problem is reduced to solve a one-component ZYO system in the resonance conditions.

  9. Two-component colour dipole emission in the central region of onium-onium scattering

    CERN Document Server

    Peschanski, R

    1995-01-01

    The initial-state radiation of soft colour dipoles produced in the central region of onium-onium scattering via single QCD Pomeron exchange (BFKL) is calculated in the framework of Mueller's dipole approach. The resulting dipole production has a two-component structure. One is constant with energy while the other grows and possesses a power-law tail at appreciably large transverse distances from the collision axis. It may be related to the growth of the gluon distribution at small Bjorken-x.

  10. Dynamics of bubbles in a two-component Bose-Einstein condensate

    Science.gov (United States)

    Sasaki, Kazuki; Suzuki, Naoya; Saito, Hiroki

    2011-03-01

    The dynamics of a phase-separated two-component Bose-Einstein condensate are investigated, in which a bubble of one component moves through the other component. Numerical simulations of the Gross-Pitaevskii equation reveal a variety of dynamics associated with the creation of quantized vortices. In two dimensions, a circular bubble deforms into an ellipse and splits into fragments with vortices, which undergo the Magnus effect. The Bénard-von Kármán vortex street is also generated. In three dimensions, a spherical bubble deforms into toruses with vortex rings. When two rings are formed, they exhibit leapfrogging dynamics.

  11. Two-component model of strong Langmuir turbulence - Scalings, spectra, and statistics of Langmuir waves

    Science.gov (United States)

    Robinson, P. A.; Newman, D. L.

    1990-01-01

    A simple two-component model of strong turbulence that makes clear predictions for the scalings, spectra, and statistics of Langmuir waves is developed. Scalings of quantities such as energy density, power input, dissipation power wave collapse, and number density of collapsing objects are investigated in detail and found to agree well with model predictions. The nucleation model of wave-packet formation is strongly supported by the results. Nucleation proceeds with energy flowing from background to localized states even in the absence of a driver. Modulational instabilities play little or no role in maintaining the turbulent state when significant density nonuniformities are present.

  12. The Two-Component Virial Theorem and the Physical Properties of Stellar Systems.

    Science.gov (United States)

    Dantas; Ribeiro; Capelato; de Carvalho RR

    2000-01-01

    Motivated by present indirect evidence that galaxies are surrounded by dark matter halos, we investigate whether their physical properties can be described by a formulation of the virial theorem that explicitly takes into account the gravitational potential term representing the interaction of the dark halo with the baryonic or luminous component. Our analysis shows that the application of such a "two-component virial theorem" not only accounts for the scaling relations displayed by, in particular, elliptical galaxies, but also for the observed properties of all virialized stellar systems, ranging from globular clusters to galaxy clusters.

  13. Anisotropic pair superfluidity of trapped two-component Bose gases in an optical lattice

    Science.gov (United States)

    Li, Yongqiang; He, Liang; Hofstetter, Walter

    2013-09-01

    We theoretically investigate the pair-superfluid phase of two-component ultracold gases with attractive inter-species interactions in an optical lattice. We establish the phase diagram for filling n = 1 at zero and finite temperatures, by applying bosonic dynamical mean-field theory, and observe stable pair-superfluid and charge-density wave quantum phases for asymmetric hopping of the two species. While the pair superfluid is found to be robust in the presence of a harmonic trap, we observe that it is destroyed already by a small population imbalance of the two species.

  14. Two-component Fermions in Optical Lattice with Spatially Alternating Interactions

    Science.gov (United States)

    Hoang, Anh-Tuan; Nguyen, Thi-Hai-Yen; Tran, Thi-Thu-Trang; Le, Duc-Anh

    2016-10-01

    We investigate two-component mass-imbalanced fermions in an optical lattice with spatially modulated interactions by using two-site dynamical mean field theory. At half-filling and zero temperature, the phase diagram of the system is analytically obtained, in which the metallic region is reduced with increasing the mass imbalance. The ground-state properties of the fermionic system are discussed from the behaviors of both the spin-dependent quasi-particle weight at the Fermi level and the double occupancy for each sublattice as functions of the local interaction strengths for various values of the mass imbalance.

  15. Comparing numerical and analytical approaches to strongly interacting two-component mixtures in one dimensional traps

    DEFF Research Database (Denmark)

    Bellotti, Filipe Furlan; Salami Dehkharghani, Amin; Zinner, Nikolaj Thomas

    2017-01-01

    We investigate one-dimensional harmonically trapped two-component systems for repulsive interaction strengths ranging from the non-interacting to the strongly interacting regime for Fermi-Fermi mixtures. A new and powerful mapping between the interaction strength parameters from a continuous......) and exact diagonalization) and analytically. Since DMRG results do not converge as the interaction strength is increased, analytical solutions are used as a benchmark to identify the point where these calculations become unstable. We use the proposed mapping to set a quantitative limit on the interaction...

  16. Dimensional regularization is generic

    CERN Document Server

    Fujikawa, Kazuo

    2016-01-01

    The absence of the quadratic divergence in the Higgs sector of the Standard Model in the dimensional regularization is usually regarded to be an exceptional property of a specific regularization. To understand what is going on in the dimensional regularization, we illustrate how to reproduce the results of the dimensional regularization for the $\\lambda\\phi^{4}$ theory in the more conventional regularization such as the higher derivative regularization; the basic postulate involved is that the quadratically divergent induced mass, which is independent of the scale change of the physical mass, is kinematical and unphysical. This is consistent with the derivation of the Callan-Symanzik equation, which is a comparison of two theories with slightly different masses, for the $\\lambda\\phi^{4}$ theory without encountering the quadratic divergence. We thus suggest that the dimensional regularization is generic in a bottom-up approach starting with a successful low-energy theory. We also define a modified version of t...

  17. Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis

    National Research Council Canada - National Science Library

    Skerker, Jeffrey M; Prasol, Melanie S; Perchuk, Barrett S; Biondi, Emanuele G; Laub, Michael T

    2005-01-01

    Two-component signal transduction systems, comprised of histidine kinases and their response regulator substrates, are the predominant means by which bacteria sense and respond to extracellular signals...

  18. Two-component jet simulations: I. Topological stability of analytical MHD outflow solutions

    CERN Document Server

    Matsakos, T; Vlahakis, N; Massaglia, S; Mignone, A; Trussoni, E

    2007-01-01

    Observations of collimated outflows in young stellar objects indicate that several features of the jets can be understood by adopting the picture of a two-component outflow, wherein a central stellar component around the jet axis is surrounded by an extended disk-wind. The precise contribution of each component may depend on the intrinsic physical properties of the YSO-disk system as well as its evolutionary stage. In this context, the present article starts a systematic investigation of two-component jet models via time-dependent simulations of two prototypical and complementary analytical solutions, each closely related to the properties of stellar-outflows and disk-winds. These models describe a meridionally and a radially self-similar exact solution of the steady-state, ideal hydromagnetic equations, respectively. By using the PLUTO code to carry out the simulations, the study focuses on the topological stability of each of the two analytical solutions, which are successfully extended to all space by remo...

  19. Arabidopsis ethylene-response gene ETR1: Similiarity of product to two-component regulators

    Energy Technology Data Exchange (ETDEWEB)

    Chang, C.; Kwok, S.F.; Bleecker, A.B.; Meyerowitz, E.M. (California Institute of Technology, Pasadena, CA (United States))

    1993-10-22

    Ethylene behaves as a hormone in plants, regulating such aspects of growth and development as fruit ripening, flower senescence, and abscission. Ethylene insensitivity is conferred by dominant mutations in the ETR1 gene early in the ethylene signal transduction pathway of Arabidopsis thaliana. The ETR1 gene was cloned by the method of chromosome walking. Each of the four known etr1 mutant alleles contains a missense mutation near the amino terminus of the predicted protein. Although the sequence of the amino-terminal half of the deduced ETR1 protein appears to be novel, the carboxyl-terminal half is similar in sequence to both components of the prokaryotic family of signal transducers known as the two-component systems. Thus, an early step in ethylene signal transduction in plants may involve transfer of phosphate as in prokaryotic two-component systems. The dominant etr1-1 mutant gene conferred ethylene insensitivity to wild-type Arabidopsis plants when introduced by transformation.

  20. Two-Component Signal Transduction System SaeRS Positively Regulates Staphylococcus epidermidis Glucose Metabolism

    Directory of Open Access Journals (Sweden)

    Qiang Lou

    2014-01-01

    Full Text Available Staphylococcus epidermidis, which is a causative pathogen of nosocomial infection, expresses its virulent traits such as biofilm and autolysis regulated by two-component signal transduction system SaeRS. In this study, we performed a proteomic analysis of differences in expression between the S. epidermidis 1457 wild-type and saeRS mutant to identify candidates regulated by saeRS using two-dimensional gel electrophoresis (2-DE combined with matrix-assisted laser desorption/lonization mass spectrometry (MALDI-TOF-MS. Of 55 identified proteins that significantly differed in expression between the two strains, 15 were upregulated and 40 were downregulated. The downregulated proteins included enzymes related to glycolysis and TCA cycle, suggesting that glucose is not properly utilized in S. epidermidis when saeRS was deleted. The study will be helpful for treatment of S. epidermidis infection from the viewpoint of metabolic modulation dependent on two-component signal transduction system SaeRS.

  1. Two-component model of the interaction of an interstellar cloud with surrounding hot plasma

    CERN Document Server

    Provornikova, E A; Lallement, R

    2011-01-01

    We present a two-component gasdynamic model of an interstellar cloud embedded in a hot plasma. It is assumed that the cloud consists of atomic hydrogen gas, interstellar plasma is quasineutral. Hydrogen atoms and plasma protons interact through a charge exchange process. Magnetic felds and radiative processes are ignored in the model. The influence of heat conduction within plasma on the interaction between a cloud and plasma is studied. We consider the extreme case and assume that hot plasma electrons instantly heat the plasma in the interaction region and that plasma flow can be described as isothermal. Using the two-component model of the interaction of cold neutral cloud and hot plasma, we estimate the lifetime of interstellar clouds. We focus on the clouds typical for the cluster of local interstellar clouds embedded in the hot Local Bubble and give an estimate of the lifetime of the Local interstellar cloud where the Sun currently travels. The charge transfer between highly charged plasma ions and neutr...

  2. Patient Autonomy for the Management of Chronic Conditions: A Two-Component Re-conceptualization

    Science.gov (United States)

    Naik, Aanand D.; Dyer, Carmel B.; Kunik, Mark E.; McCullough, Laurence B.

    2010-01-01

    The clinical application of the concept of patient autonomy has centered on the ability to deliberate and make treatment decisions (decisional autonomy) to the virtual exclusion of the capacity to execute the treatment plan (executive autonomy). However, the one-component concept of autonomy is problematic in the context of multiple chronic conditions. Adherence to complex treatments commonly breaks down when patients have functional, educational, and cognitive barriers that impair their capacity to plan, sequence, and carry out tasks associated with chronic care. The purpose of this article is to call for a two-component re-conceptualization of autonomy and to argue that the clinical assessment of capacity for patients with chronic conditions should be expanded to include both autonomous decision making and autonomous execution of the agreed-upon treatment plan. We explain how the concept of autonomy should be expanded to include both decisional and executive autonomy, describe the biopsychosocial correlates of the two-component concept of autonomy, and recommend diagnostic and treatment strategies to support patients with deficits in executive autonomy. PMID:19180389

  3. Numerical analysis of a non equilibrium two-component two-compressible flow in porous media

    KAUST Repository

    Saad, Bilal Mohammed

    2013-09-01

    We propose and analyze a finite volume scheme to simulate a non equilibrium two components (water and hydrogen) two phase flow (liquid and gas) model. In this model, the assumption of local mass non equilibrium is ensured and thus the velocity of the mass exchange between dissolved hydrogen and hydrogen in the gas phase is supposed finite. The proposed finite volume scheme is fully implicit in time together with a phase-by-phase upwind approach in space and it is discretize the equations in their general form with gravity and capillary terms We show that the proposed scheme satisfies the maximum principle for the saturation and the concentration of the dissolved hydrogen. We establish stability results on the velocity of each phase and on the discrete gradient of the concentration. We show the convergence of a subsequence to a weak solution of the continuous equations as the size of the discretization tends to zero. At our knowledge, this is the first convergence result of finite volume scheme in the case of two component two phase compressible flow in several space dimensions.

  4. Implications of Two-component Dark Matter Induced by Forbidden Channels and Thermal Freeze-out

    CERN Document Server

    Aoki, Mayumi

    2016-01-01

    We consider a model of two-component dark matter based on a hidden $U(1)_D$ symmetry, in which relic densities of the dark matter are determined by forbidden channels and thermal freeze-out. The hidden $U(1)_D$ symmetry is spontaneously broken to a residual $\\mathbb{Z}_4$ symmetry, and the lightest $\\mathbb{Z}_4$ charged particle can be a dark matter candidate. Moreover, depending on the mass hierarchy in the dark sector, we have two-component dark matter. We show that the relic density of the lighter dark matter component can be determined by forbidden annihilation channels which require larger couplings compared to the normal freeze-out mechanism. As a result, a large self-interaction of the lighter dark matter component can be induced, which may solve small scale problems of $\\Lambda$CDM model. On the other hand, the heavier dark matter component is produced by normal freeze-out mechanism. We find that interesting implications emerge between the two dark matter components in this framework. We explore dete...

  5. Negative control in two-component signal transduction by transmitter phosphatase activity.

    Science.gov (United States)

    Huynh, TuAnh Ngoc; Stewart, Valley

    2011-10-01

    Bifunctional sensor transmitter modules of two-component systems exert both positive and negative control on the receiver domain of the cognate response regulator. In negative control, the transmitter module accelerates the rate of phospho-receiver dephosphorylation. This transmitter phosphatase reaction serves the important physiological functions of resetting response regulator phosphorylation level and suppressing cross-talk. Although the biochemical reactions underlying positive control are reasonably well understood, the mechanism for transmitter phosphatase activity has been unknown. A recent hypothesis is that the transmitter phosphatase reaction is catalysed by a conserved Gln, Asn or Thr residue, via a hydrogen bond between the amide or hydroxyl group and the nucleophilic water molecule in acyl-phosphate hydrolysis. This hypothetical mechanism closely resembles the established mechanisms of auxiliary phosphatases such as CheZ and CheX, and may be widely conserved in two-component signal transduction. In addition to the proposed catalytic residues, transmitter phosphatase activity also requires the correct transmitter conformation and appropriate interactions with the receiver. Evidence suggests that the phosphatase-competent and autokinase-competent states are mutually exclusive, and the corresponding negative and positive activities are likely to be reciprocally regulated through dynamic control of transmitter conformations. © 2011 Blackwell Publishing Ltd.

  6. Positive autoregulation shapes response timing and intensity in two-component signal transduction systems.

    Science.gov (United States)

    Mitrophanov, Alexander Y; Hadley, Tricia J; Groisman, Eduardo A

    2010-08-27

    Positive feedback loops are regulatory elements that can modulate expression output, kinetics and noise in genetic circuits. Transcriptional regulators participating in such loops are often expressed from two promoters, one constitutive and one autoregulated. Here, we investigate the interplay of promoter strengths and the intensity of the stimulus activating the transcriptional regulator in defining the output of a positively autoregulated genetic circuit. Using a mathematical model of two-component regulatory systems, which are present in all domains of life, we establish that positive feedback strongly affects the steady-state output levels at both low and high levels of stimulus if the constitutive promoter of the regulator is weak. By contrast, the effect of positive feedback is negligible when the constitutive promoter is sufficiently strong, unless the stimulus intensity is very high. Furthermore, we determine that positive feedback can affect both transient and steady state output levels even in the simplest genetic regulatory systems. We tested our modeling predictions by abolishing the positive feedback loop in the two-component regulatory system PhoP/PhoQ of Salmonella enterica, which resulted in diminished induction of PhoP-activated genes. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

  7. Two-component vector solitons in defocusing Kerr-type media with spatially modulated nonlinearity

    Energy Technology Data Exchange (ETDEWEB)

    Zhong, Wei-Ping, E-mail: zhongwp6@126.com [Department of Electronic and Information Engineering, Shunde Polytechnic, Guangdong Province, Shunde 528300 (China); Texas A and M University at Qatar, P.O. Box 23874 Doha (Qatar); Belić, Milivoj [Texas A and M University at Qatar, P.O. Box 23874 Doha (Qatar); Institute of Physics, University of Belgrade, P.O. Box 57, 11001 Belgrade (Serbia)

    2014-12-15

    We present a class of exact solutions to the coupled (2+1)-dimensional nonlinear Schrödinger equation with spatially modulated nonlinearity and a special external potential, which describe the evolution of two-component vector solitons in defocusing Kerr-type media. We find a robust soliton solution, constructed with the help of Whittaker functions. For specific choices of the topological charge, the radial mode number and the modulation depth, the solitons may exist in various forms, such as the half-moon, necklace-ring, and sawtooth vortex-ring patterns. Our results show that the profile of such solitons can be effectively controlled by the topological charge, the radial mode number, and the modulation depth. - Highlights: • Two-component vector soliton clusters in defocusing Kerr-type media are reported. • These soliton clusters are constructed with the help of Whittaker functions. • The half-moon, necklace-ring and vortex-ring patterns are found. • The profile of these solitons can be effectively controlled by three soliton parameters.

  8. Modeling and Simulation of Two-Phase Two-Component Flow with Disappearing Nonwetting Phase

    CERN Document Server

    Neumann, Rebecca; Ippisch, Olaf

    2012-01-01

    Carbon Capture and Storage (CCS) is a recently discussed new technology, aimed at allowing an ongoing use of fossil fuels while preventing the produced CO2 to be released to the atmosphere. CSS can be modeled with two components (water and CO2) in two phases (liquid and CO2). To simulate the process, a multiphase flow equation with equilibrium phase exchange is used. One of the big problems arising in two-phase two-component flow simulations is the disappearance of the nonwetting phase, which leads to a degeneration of the equations satisfied by the saturation. A standard choice of primary variables, which is the pressure of one phase and the saturation of the other phase, cannot be applied here. We developed a new approach using the pressure of the nonwetting phase and the capillary pressure as primary variables. One important advantage of this approach is the fact that we have only one set of primary variables that can be used for the biphasic as well as the monophasic case. We implemented this new choice o...

  9. Features of protein-protein interactions in two-component signaling deduced from genomic libraries.

    Science.gov (United States)

    White, Robert A; Szurmant, Hendrik; Hoch, James A; Hwa, Terence

    2007-01-01

    As more and more sequence data become available, new approaches for extracting information from these data become feasible. This chapter reports on one such method that has been applied to elucidate protein-protein interactions in bacterial two-component signaling pathways. The method identifies residues involved in the interaction through an analysis of over 2500 functionally coupled proteins and a precise determination of the substitutional constraints placed on one protein by its signaling mate. Once identified, a simple log-likelihood scoring procedure is applied to these residues to build a predictive tool for assigning signaling mates. The ability to apply this method is based on a proliferation of related domains within multiple organisms. Paralogous evolution through gene duplication and divergence of two-component systems has commonly resulted in tens of closely related interacting pairs within one organism with a roughly one-to-one correspondence between signal and response. This provides us with roughly an order of magnitude more protein pairs than there are unique, fully sequenced bacterial species. Consequently, this chapter serves as both a detailed exposition of the method that has provided more depth to our knowledge of bacterial signaling and a look ahead to what would be possible on a more widespread scale, that is, to protein-protein interactions that have only one example per genome, as the number of genomes increases by a factor of 10.

  10. A theory of scintillation for two-component power law irregularity spectra: Overview and numerical results

    Science.gov (United States)

    Carrano, Charles S.; Rino, Charles L.

    2016-06-01

    We extend the power law phase screen theory for ionospheric scintillation to account for the case where the refractive index irregularities follow a two-component inverse power law spectrum. The two-component model includes, as special cases, an unmodified power law and a modified power law with spectral break that may assume the role of an outer scale, intermediate break scale, or inner scale. As such, it provides a framework for investigating the effects of a spectral break on the scintillation statistics. Using this spectral model, we solve the fourth moment equation governing intensity variations following propagation through two-dimensional field-aligned irregularities in the ionosphere. A specific normalization is invoked that exploits self-similar properties of the structure to achieve a universal scaling, such that different combinations of perturbation strength, propagation distance, and frequency produce the same results. The numerical algorithm is validated using new theoretical predictions for the behavior of the scintillation index and intensity correlation length under strong scatter conditions. A series of numerical experiments are conducted to investigate the morphologies of the intensity spectrum, scintillation index, and intensity correlation length as functions of the spectral indices and strength of scatter; retrieve phase screen parameters from intensity scintillation observations; explore the relative contributions to the scintillation due to large- and small-scale ionospheric structures; and quantify the conditions under which a general spectral break will influence the scintillation statistics.

  11. Regrowth of stellar discs in mature galaxies: the two-component nature of NGC 7217 revisited with VIRUS-W

    Science.gov (United States)

    Fabricius, Maximilian H.; Coccato, Lodovico; Bender, Ralf; Drory, Niv; Gössl, Claus.; Landriau, Martin; Saglia, Roberto P.; Thomas, Jens; Williams, Michael J.

    2014-07-01

    Previous studies have reported the existence of two counter-rotating stellar discs in the early-type spiral galaxy NGC 7217. We have obtained high-resolution optical spectroscopic data (R ≈ 9000) with the new fibre-based Integral Field Unit instrument VIRUS-W at the 2.7-m telescope of the McDonald Observatory in Texas. Our analysis confirms the existence of two components. However, we find them to be corotating. The first component is the more luminous (≈77 per cent of the total light), has the higher velocity dispersion (≈170 km s-1) and rotates relatively slowly (projected vmax = 50 km s-1). The lower luminosity second component (≈23 per cent of the total light) has a low velocity dispersion (≈20 km s-1) and rotates quickly (projected vmax = 150 km s-1). The difference in the kinematics of the two stellar components allows us to perform a kinematic decomposition and to measure the strengths of their Mg and Fe Lick indices separately. The rotational velocities and dispersions of the less luminous and faster component are very similar to those of the interstellar gas as measured from the [O III] emission. Morphological evidence of active star formation in this component further suggests that NGC 7217 may be in the process of (re)growing a disc inside a more massive and higher dispersion stellar halo. The kinematically cold and regular structure of the gas disc in combination with the central almost dust-free morphology allows us to compare the dynamical mass inside of the central 500 pc with predictions from a stellar population analysis. We find agreement between the two if a Kroupa stellar initial mass function is assumed.

  12. Robust Sparse Analysis Regularization

    CERN Document Server

    Vaiter, Samuel; Dossal, Charles; Fadili, Jalal

    2011-01-01

    This paper studies the properties of L1-analysis regularization for the resolution of linear inverse problems. Most previous works consider sparse synthesis priors where the sparsity is measured as the L1 norm of the coefficients that synthesize the signal in a given dictionary. In contrast, the more general analysis regularization minimizes the L1 norm of the correlations between the signal and the atoms in the dictionary. The corresponding variational problem includes several well-known regularizations such as the discrete total variation and the fused lasso. We first prove that a solution of analysis regularization is a piecewise affine function of the observations. Similarly, it is a piecewise affine function of the regularization parameter. This allows us to compute the degrees of freedom associated to sparse analysis estimators. Another contribution gives a sufficient condition to ensure that a signal is the unique solution of the analysis regularization when there is no noise in the observations. The s...

  13. Regular expressions cookbook

    CERN Document Server

    Goyvaerts, Jan

    2009-01-01

    This cookbook provides more than 100 recipes to help you crunch data and manipulate text with regular expressions. Every programmer can find uses for regular expressions, but their power doesn't come worry-free. Even seasoned users often suffer from poor performance, false positives, false negatives, or perplexing bugs. Regular Expressions Cookbook offers step-by-step instructions for some of the most common tasks involving this tool, with recipes for C#, Java, JavaScript, Perl, PHP, Python, Ruby, and VB.NET. With this book, you will: Understand the basics of regular expressions through a

  14. Bacillus subtilis Two-Component System Sensory Kinase DegS Is Regulated by Serine Phosphorylation in Its Input Domain

    DEFF Research Database (Denmark)

    Jers, Carsten; Kobir, Ahasanul; Søndergaard, Elsebeth Oline;

    2011-01-01

    Bacillus subtilis two-component system DegS/U is well known for the complexity of its regulation. The cytosolic sensory kinase DegS does not receive a single predominant input signal like most two-component kinases, instead it integrates a wide array of metabolic inputs that modulate its activity...

  15. SO(3,2) Structure and Distributions of Two-Component Bose-Einstein Condensates with Lower Excitations

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hong-Biao

    2003-01-01

    The eigenstates describing two-component Bose-Einstein condensates (BEC) with weakly excitations have been found, by using the SO(3,2) algebraic mean-field approximation. We show that the two-component modified BEC (see Eq (26)) possesses uniquely super-Poissonian distribution in a fixcd magnetic ficld along z direction. The distribution will be uncertain, if B = 0.

  16. Atomic Tunneling Effect in Two-Component Bose-Einstein Condensates with a Coupling Drive

    Institute of Scientific and Technical Information of China (English)

    JIAO Zhi-Yong; YU Zhao-Xian; YANG Xin-Jian

    2004-01-01

    In this paper, we have studied the atomic population difference and the atomic tunneling current of twocomponent Bose-Einstein condensates with a coupling drive. It is found that when the two-component Bose-Einstein condensates are initially in the coherent states, the atomic population difference may exhibit the step structure, in which the numbers of the step increase with the decrease of the Rabi frequency and with the increment of the initial phase difference. The atomic population difference may exhibit collapses, and revivals, in which their periods are affected dramatically by the Rabi frequency and the initial phase difference. The atomic tunneling current may exhibit damping oscillation behaviors, and exist the step structure for the time range of 10-10 ~ 10-9 second.

  17. Global solutions for the two-component Camassa-Holm system

    CERN Document Server

    Grunert, K; Raynaud, X

    2011-01-01

    We prove existence of a global conservative solution of the Cauchy problem for the two-component Camassa-Holm (2CH) system on the line, allowing for nonvanishing and distinct asymptotics at plus and minus infinity. The solution is proven to be smooth as long as the density is bounded away from zero. Furthermore, we show that by taking the limit of vanishing density in the 2CH system, we obtain the global conservative solution of the (scalar) Camassa-Holm equation, which provides a novel way to define and obtain these solutions. Finally, it is shown that while solutions of the 2CH system have infinite speed of propagation, singularities travel with finite speed.

  18. The sae locus of Staphylococcus aureus encodes a two-component regulatory system.

    Science.gov (United States)

    Giraudo, A T; Calzolari, A; Cataldi, A A; Bogni, C; Nagel, R

    1999-08-01

    Sae is a regulatory locus that activates the production of several exoproteins in Staphylococcus aureus. A 3.4-kb fragment of a S. aureus genomic library, screened with a probe adjacent to the transposon insertion of a sae::Tn551 mutant, was cloned into a bifunctional vector. This fragment was shown to carry the sae locus by restoration of exoprotein production in sae mutants. The sae locus was mapped to the SmaI-D fragment of the staphylococcal chromosome by pulse-field electrophoresis. Sequence analysis of the cloned fragment revealed the presence of two genes, designated saeR and saeS, encoding a response regulator and a histidine protein kinase, respectively, with high homology to other bacterial two-component regulatory systems.

  19. The curvature of semidirect product groups associated with two-component Hunter-Saxton systems

    Science.gov (United States)

    Kohlmann, Martin

    2011-06-01

    In this paper, we study two-component versions of the periodic Hunter-Saxton equation and its μ-variant. Considering both equations as a geodesic flow on the semidirect product of the circle diffeomorphism group Diff( S) with a space of scalar functions on S we show that both equations are locally well posed. The main result of this paper is that the sectional curvature associated with the 2HS is constant and positive and that 2µHS allows for a large subspace of positive sectional curvature. The issues of this paper are related to some of the results for 2CH and 2DP presented in Escher et al (2011 J. Geom. Phys. 61 436-52).

  20. Feshbach P -Q partitioning technique and the two-component Dirac equation

    Science.gov (United States)

    Luo, Da-Wei; Pyshkin, P. V.; Yu, Ting; Lin, Hai-Qing; You, J. Q.; Wu, Lian-Ao

    2016-09-01

    We provide an alternative approach to relativistic dynamics based on the Feshbach projection technique. Instead of directly studying the Dirac equation, we derive a two-component equation for the upper spinor. This approach allows one to investigate the underlying physics in a different perspective. For particles with small mass such as the neutrino, the leading-order equation has a Hermitian effective Hamiltonian, implying there is no leakage between the upper and lower spinors. In the weak relativistic regime, the leading order corresponds to a non-Hermitian correction to the Pauli equation, which takes into account the nonzero possibility of finding the lower-spinor state and offers a more precise description.

  1. Energy Spectrum of Two-Component Bose-Einstein Condensates in Optical Lattices

    Institute of Scientific and Technical Information of China (English)

    HAN Jiu-Rong; LIU Jin-Ming; JING Hui; WANG Yu-Zhu

    2005-01-01

    With the method of Green's function, we investigate the energy spectra of two-component ultracold bosonic atoms in optical lattices. We find that there are two energy bands for each component. The critical condition of the superfluid-Mott insulator phase transition is determined by the energy band structure. We also find that the nearest neighboring and on-site interactions fail to change the structure of energy bands, but shift the energy bands only.According to the conditions of the phase transitions, three stable superfluid and Mott insulating phases can be found by adjusting the experiment parameters. We also discuss the possibility of observing these new phases and their transitions in further experiments.

  2. The SaeRS Two-Component System of Staphylococcus aureus

    Science.gov (United States)

    Liu, Qian; Yeo, Won-Sik; Bae, Taeok

    2016-01-01

    In the Gram-positive pathogenic bacterium Staphylococcus aureus, the SaeRS two-component system (TCS) plays a major role in controlling the production of over 20 virulence factors including hemolysins, leukocidins, superantigens, surface proteins, and proteases. The SaeRS TCS is composed of the sensor histidine kinase SaeS, response regulator SaeR, and two auxiliary proteins SaeP and SaeQ. Since its discovery in 1994, the sae locus has been studied extensively, and its contributions to staphylococcal virulence and pathogenesis have been well documented and understood; however, the molecular mechanism by which the SaeRS TCS receives and processes cognate signals is not. In this article, therefore, we review the literature focusing on the signaling mechanism and its interaction with other global regulators. PMID:27706107

  3. Two-component system YvqEC-dependent bacterial resistance against vancomycin in Bacillus thuringiensis.

    Science.gov (United States)

    Zhang, Shumeng; Hu, Yimin; Fan, Qingyun; Wang, Xun; He, Jin

    2015-08-01

    YvqEC is one of the two-component signal transduction systems that may respond to cell envelope stress and enable cells to adjust multiple cellular functions. It consists of a histidine kinase YvqE and a response regulator YvqC. In this study, we separately constructed a single gene mutant ΔyvqE and a double gene mutant ΔyvqEC in Bacillus thuringiensis BMB171 through a homing endonucleases I-SceI mediated markerless gene deletion method. We found that the deletion of either yvqE or yvqEC weakened the resistance of B. thuringiensis against vancomycin. We also identified nine operons that may be involved in the cellular metabolism regulated by YvqC. This study not only enriches our understanding of bacterial resistance mechanisms against vancomycin, but also helps investigate the functions of YvqEC.

  4. Phase Separation and Dynamics of two-component Bose-Einstein condensates

    CERN Document Server

    Lee, Kean Loon; Liu, I-Kang; Wacker, Lars; Arlt, Jan J; Proukakis, Nick P

    2016-01-01

    The miscibility of two interacting quantum systems is an important testing ground for the understanding of complex quantum systems. Two-component Bose-Einstein condensates enable the investigation of this scenario in a particularly well controlled setting. In a homogeneous system, the transition between mixed and separated phases is fully characterised by a `miscibility parameter', based on the ratio of intra- to inter-species interaction strengths. Here we show, however, that this parameter is no longer the optimal one for trapped gases, for which the location of the phase boundary depends critically on atom numbers. We demonstrate how monitoring of damping rates and frequencies of dipole oscillations enables the experimental mapping of the phase diagram by numerical implementation of a fully self-consistent finite-temperature kinetic theory for binary condensates. The change in damping rate is explained in terms of surface oscillation in the immiscible regime, and counterflow instability in the miscible reg...

  5. Addition Formulae of Discrete KP, q-KP and Two-Component BKP Systems

    Science.gov (United States)

    Gao, Xu; Li, Chuan-Zhong; He, Jing-Song

    2016-04-01

    In this paper, we construct the addition formulae for several integrable hierarchies, including the discrete KP, the q-deformed KP, the two-component BKP and the D type Drinfeld-Sokolov hierarchies. With the help of the Hirota bilinear equations and τ functions of different kinds of KP hierarchies, we prove that these addition formulae are equivalent to these hierarchies. These studies show that the addition formula in the research of the integrable systems has good universality. Supported by the Zhejiang Provincial Natural Science Foundation under Grant No. LY15A010004, the National Natural Science Foundation of China under Grant Nos. 11201251, 11571192 and the Natural Science Foundation of Ningbo under Grant No. 2015A610157. Jingsong He is supported by the National Natural Science Foundation of China under Grant No. 11271210, K.C. Wong Magna Fund in Ningbo University

  6. Preparation of two component Fibrin Glue and its clinical evaluation in skin grafts and flaps

    Directory of Open Access Journals (Sweden)

    Jain P

    2003-01-01

    Full Text Available Tissue adhesive is one of the alternative to conventional suturing and has some added advantages. Fibrin glue has been used in obtaining haemostasis following trauma to spleen and liver. It has also been used in repair of dural tear and bronchial fistula. Fibrin glue is a biological tissue adhesive based on the final stage of coagulation wherein. Thrombin acting on fibrinogen converts it into fibrin. Thus, it has two components, one is fibrinogen and another is thrombin. We have prepared both components of fibrin glue. Fibrinogen was obtained from patient's own blood and thrombin from fresh frozen plasma of screened healthy donor. The glue was used in 20 cases requiring skin graft or flap. The results were compared with conventional suturing method. Use of the fibrin glue is simple, safe, cost effective, and rapid technique to fix the skin grafts and flaps with avoidance of peroperative bleeding and postoperative collection. It also has better overall results.

  7. Dynamic form factor of two-component plasmas beyond the static local field approximation

    CERN Document Server

    Daligault, J

    2003-01-01

    The spectrum of ion density fluctuations in a strongly coupled plasma is described both within the static G(k, 0) and high-frequency G(k, infinity) local field approximation. By a direct comparison with molecular dynamics data, we find that for large coupling, G(k, 0) is inadequate. Based on this result, we employ the Zwanzig-Mori memory function approach to model the Thomson scattering cross section, i.e. the electron dynamic form factor S sub e sub e (k, omega) of a dense two-component plasma. We show the sensitivity of S sub e sub e (k, omega) to three approximations for G(k, omega).

  8. PREPARATION OF PUZZOLANA ACTIVE TWO COMPONENT COMPOSITE FOR LATENT HEAT STORAGE

    Directory of Open Access Journals (Sweden)

    Jan Fort

    2016-10-01

    Full Text Available Application of Phase Change Materials (PCMs represents promising way for an increase of energy efficiency of industrial devices, reduction of energy demands for heating and cooling, waste heat recovery, solar energy storage and smart control of buildings interior climate. In this paper, the potential of diatomite as the bearer for the shape stable PCM was studied in order to develop material applicable in the mix composition of composite materials. Considering availability, endurance and compatibility of diatomite with the cement and lime based materials, preparation of diatomite/wax composite brings pozzolana active PCM with great promises at a reasonable cost. Prepared composite was analysed in detail using laser diffraction, scanning electron microscopy, Fourier transform infrared spectroscopy and differential scanning calorimetry. Also the pozzolanic activity was measured. The prepared two components composite exhibits high latent heat storage and particle size distribution compatible with cement and hydrated lime.

  9. WalRK two component system of Bacillus anthracis responds to temperature and antibiotic stress.

    Science.gov (United States)

    Dhiman, Alisha; Gopalani, Monisha; Bhatnagar, Rakesh

    2015-04-17

    WalRK Two Component System (TCS) of Bacillus anthracis forms a functional TCS. This report elaborates upon the WalRK genomic architecture, promoter structure, promoter activity and expression under various stress conditions in B. anthracis. 5' RACE located the WalRK functional promoter within 317 bp region upstream of WalR. Reporter gene assays demonstrated maximal promoter activity during early growth phases indicating utility in exponential stages of growth. qRT-PCR showed upregulation of WalRK transcripts during temperature and antibiotic stress. However, WalR overexpression did not affect the tested antibiotic MIC values in B. anthracis. Collectively, these results confirm that WalRK responds to cell envelope stress in B. anthracis.

  10. Output Rate of Atomic Four-Wave Mixing in Two-Component Bose-Einstein Condensate

    Institute of Scientific and Technical Information of China (English)

    LI Jia-Hua; LI Wei-Bing; PENG Ju-Cun

    2004-01-01

    In this letter, following the proposal of Heurich et al. [Phys. Rev. A63 (2001) 033605], we analyze and discuss output rate of atomic four-wave mixing in the two-component Bose-Einstein condensate under the condition of the steady state. The results show that the magnitude of the signal beam increases with the increase of the intensity of the probe beam, up to a saturated value, then it decreases as the probe beam increases. The influence of the interaction range on the signal beam is also predicted. In particular, it is worth while pointing out that in contrast to the previous solutions, our obtained analytical solutions are of very simple and explicit forms, which open the door for further investigating the related physical mechanisms.

  11. Genomic analysis of two-component signal transduction proteins in basidiomycetes.

    Science.gov (United States)

    Lavín, José L; Ramírez, Lucía; Ussery, David W; Pisabarro, Antonio G; Oguiza, José A

    2010-01-01

    Two-component system (TCS) proteins are components of complex signal transduction pathways in fungi, and play essential roles in the regulation of several cellular functions and responses. Species of basidiomycetes have a marked variation in their specific physiological traits, morphological complexity and lifestyles. In this study, we have used the available complete genomes of basidiomycetes to carry out a thorough identification and an extensive comparative analysis of the TCS proteins in this fungal phylum. In comparison with ascomycetes, basidiomycetes exhibit an intermediate number of TCS proteins. Several TCS proteins are highly conserved among all the basidiomycetes, and other TCS proteins appear to be specific to particular species of basidiomycetes. Moreover, some species appear to have developed a unique histidine kinase group with unusual domain architecture, the Dual-histidine kinases. The presence of differential sets of TCS proteins between basidiomycete species might reflect their adaptation to diverse environmental niches.

  12. A two-component system regulates hemin acquisition in Porphyromonas gingivalis.

    Directory of Open Access Journals (Sweden)

    Jodie C Scott

    Full Text Available Porphyromonas gingivalis is a Gram-negative oral anaerobe associated with infection of the periodontia. The organism has a small number of two-component signal transduction systems, and after comparing genome sequences of strains W83 and ATCC 33277 we discovered that the latter was mutant in histidine kinase (PGN_0752, while the cognate response regulator (PGN_0753 remained intact. Microarray-based transcriptional profiling and ChIP-seq assays were carried out with an ATCC 33277 transconjugant containing the functional histidine kinase from strain W83 (PG0719. The data showed that the regulon of this signal transduction system contained genes that were involved in hemin acquisition, including gingipains, at least three transport systems, as well as being self-regulated. Direct regulation by the response regulator was confirmed by electrophoretic mobility shift assays. In addition, the system appears to be activated by hemin and the regulator acts as both an activator and repressor.

  13. Histidine phosphotransfer proteins in fungal two-component signal transduction pathways.

    Science.gov (United States)

    Fassler, Jan S; West, Ann H

    2013-08-01

    The histidine phosphotransfer (HPt) protein Ypd1 is an important participant in the Saccharomyces cerevisiae multistep two-component signal transduction pathway and, unlike the expanded histidine kinase gene family, is encoded by a single gene in nearly all model and pathogenic fungi. Ypd1 is essential for viability in both S. cerevisiae and in Cryptococcus neoformans. These and other aspects of Ypd1 biology, combined with the availability of structural and mutational data in S. cerevisiae, suggest that the essential interactions between Ypd1 and response regulator domains would be a good target for antifungal drug development. The goal of this minireview is to summarize the wealth of data on S. cerevisiae Ypd1 and to consider the potential benefits of conducting related studies in pathogenic fungi.

  14. An intimate link: two-component signal transduction systems and metal transport systems in bacteria.

    Science.gov (United States)

    Singh, Kamna; Senadheera, Dilani B; Cvitkovitch, Dennis G

    2014-01-01

    Bacteria have evolved various strategies to contend with high concentrations of environmental heavy metal ions for rapid, adaptive responses to maintain cell viability. Evidence gathered in the past two decades suggests that bacterial two-component signal transduction systems (TCSTSs) are intimately involved in monitoring cation accumulation, and can regulate the expression of related metabolic and virulence genes to elicit adaptive responses to changes in the concentration of these ions. Using examples garnered from recent studies, we summarize the cross-regulatory relationships between metal ions and TCSTSs. We present evidence of how bacterial TCSTSs modulate metal ion homeostasis and also how metal ions, in turn, function to control the activities of these signaling systems linked with bacterial survival and virulence.

  15. Two-component signal transduction as potential drug targets in pathogenic bacteria.

    Science.gov (United States)

    Gotoh, Yasuhiro; Eguchi, Yoko; Watanabe, Takafumi; Okamoto, Sho; Doi, Akihiro; Utsumi, Ryutaro

    2010-04-01

    Gene clusters contributing to processes such as cell growth and pathogenicity are often controlled by two-component signal transduction systems (TCSs). Specific inhibitors against TCS systems work differently from conventional antibiotics, and developing them into new drugs that are effective against various drug-resistant bacteria may be possible. Furthermore, inhibitors of TCSs that control virulence factors may reduce virulence without killing the pathogenic bacteria. Previous TCS inhibitors targeting the kinase domain of the histidine kinase sensor suffered from poor selectivity. Recent TCS inhibitors, however, target the sensory domains of the sensors blocking the quorum sensing system, or target the essential response regulator. These new targets are introduced, together with several specific TCSs that have the potential to serve as effective drug targets. Copyright 2010 Elsevier Ltd. All rights reserved.

  16. Cross-talk and specificity in two-component signal transduction pathways.

    Science.gov (United States)

    Agrawal, Ruchi; Sahoo, Bikash Kumar; Saini, Deepak Kumar

    2016-05-01

    Two-component signaling systems (TCSs) are composed of two proteins, sensor kinases and response regulators, which can cross-talk and integrate information between them by virtue of high-sequence conservation and modular nature, to generate concerted and diversified responses. However, TCSs have been shown to be insulated, to facilitate linear signal transmission and response generation. Here, we discuss various mechanisms that confer specificity or cross-talk among TCSs. The presented models are supported with evidence that indicate the physiological significance of the observed TCS signaling architecture. Overall, we propose that the signaling topology of any TCSs cannot be predicted using obvious sequence or structural rules, as TCS signaling is regulated by multiple factors, including spatial and temporal distribution of the participating proteins.

  17. Two-component hybrid time-dependent density functional theory within the Tamm-Dancoff approximation

    Energy Technology Data Exchange (ETDEWEB)

    Kühn, Michael [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Weigend, Florian, E-mail: florian.weigend@kit.edu [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Institut für Nanotechnologie, Karlsruher Institut für Technologie, Postfach 3640, 76021 Karlsruhe (Germany)

    2015-01-21

    We report the implementation of a two-component variant of time-dependent density functional theory (TDDFT) for hybrid functionals that accounts for spin-orbit effects within the Tamm-Dancoff approximation (TDA) for closed-shell systems. The influence of the admixture of Hartree-Fock exchange on excitation energies is investigated for several atoms and diatomic molecules by comparison to numbers for pure density functionals obtained previously [M. Kühn and F. Weigend, J. Chem. Theory Comput. 9, 5341 (2013)]. It is further related to changes upon switching to the local density approximation or using the full TDDFT formalism instead of TDA. Efficiency is demonstrated for a comparably large system, Ir(ppy){sub 3} (61 atoms, 1501 basis functions, lowest 10 excited states), which is a prototype molecule for organic light-emitting diodes, due to its “spin-forbidden” triplet-singlet transition.

  18. Images and Spectral Properties of Two Component Advective Flows Around Black Holes: Effects of Photon Bending

    CERN Document Server

    Chatterjee, Arka; Ghosh, Himadri

    2016-01-01

    Two component advective flow (TCAF) successfully explains spectral and timing properties of black hole candidates. We study the nature of photon trajectories in the vicinity of a Schwarzschild black hole and incorporate this in predicting images of TCAF with a black hole at the Centre. We also compute the emitted spectra. We employ a Monte-Carlo simulation technique to achieve our goal. For accurate prediction of the image and the spectra, null trajectories are generated without constraining the motion to any specific plane. Red shift, bolometric flux and corresponding temperature have been calculated with appropriate relativistic consideration. The centrifugal barrier dominated boundary layer or CENBOL near the inner region of the disk which acts as the Compton cloud is appropriately modelled as a thick accretion disk in Schwarzschild geometry for the purpose of imaging and computing spectra. The variations of spectra and image with physical parameters such as the accretion rate ($\\dot{m}_d$) and inclination...

  19. Comparing numerical and analytical approaches to strongly interacting two-component mixtures in one dimensional traps

    Science.gov (United States)

    Bellotti, Filipe F.; Dehkharghani, Amin S.; Zinner, Nikolaj T.

    2017-02-01

    We investigate one-dimensional harmonically trapped two-component systems for repulsive interaction strengths ranging from the non-interacting to the strongly interacting regime for Fermi-Fermi mixtures. A new and powerful mapping between the interaction strength parameters from a continuous Hamiltonian and a discrete lattice Hamiltonian is derived. As an example, we show that this mapping does not depend neither on the state of the system nor on the number of particles. Energies, density profiles and correlation functions are obtained both numerically (density matrix renormalization group (DMRG) and exact diagonalization) and analytically. Since DMRG results do not converge as the interaction strength is increased, analytical solutions are used as a benchmark to identify the point where these calculations become unstable. We use the proposed mapping to set a quantitative limit on the interaction parameter of a discrete lattice Hamiltonian above which DMRG gives unrealistic results.

  20. Correlations of the upper branch of 1D harmonically trapped two-component fermi gases.

    Science.gov (United States)

    Gharashi, Seyed Ebrahim; Blume, D

    2013-07-26

    We present highly accurate energy spectra and eigenfunctions of small 1D harmonically trapped two-component Fermi gases with interspecies δ-function interactions, and analyze the correlations of the so-called upper branch (i.e., the branch that describes a repulsive Fermi gas consisting of atoms but no molecules) for positive and negative coupling constants. Changes of the two-body correlations as a function of the interspecies coupling strength reflect the competition of the interspecies interaction and the effective repulsion due to the Pauli exclusion principle, and are interpreted as a few-body analog of a transition from a nonmagnetic to a magnetic phase. Moreover, we show that the eigenstate ψadia of the infinitely strongly interacting system with |n1+n2|>2 and |n1-n2|Fermi-Fermi mapping function to the eigenfunction of the noninteracting single-component Fermi gas.

  1. Level shift two-components autoregressive conditional heteroscedasticity modelling for WTI crude oil market

    Science.gov (United States)

    Sin, Kuek Jia; Cheong, Chin Wen; Hooi, Tan Siow

    2017-04-01

    This study aims to investigate the crude oil volatility using a two components autoregressive conditional heteroscedasticity (ARCH) model with the inclusion of abrupt jump feature. The model is able to capture abrupt jumps, news impact, clustering volatility, long persistence volatility and heavy-tailed distributed error which are commonly observed in the crude oil time series. For the empirical study, we have selected the WTI crude oil index from year 2000 to 2016. The results found that by including the multiple-abrupt jumps in ARCH model, there are significant improvements of estimation evaluations as compared with the standard ARCH models. The outcomes of this study can provide useful information for risk management and portfolio analysis in the crude oil markets.

  2. Universal properties of a trapped two-component fermi gas at unitarity.

    Science.gov (United States)

    Blume, D; von Stecher, J; Greene, Chris H

    2007-12-01

    We treat the trapped two-component Fermi system, in which unlike fermions interact through a two-body short-range potential having no bound state but an infinite scattering length. By accurately solving the Schrödinger equation for up to N=6 fermions, we show that no many-body bound states exist other than those bound by the trapping potential, and we demonstrate unique universal properties of the system: Certain excitation frequencies are separated by 2variant Planck's over 2piomega, the wave functions agree with analytical predictions and a virial theorem is fulfilled. Further calculations up to N=30 determine the excitation gap, an experimentally accessible universal quantity, and it agrees with recent predictions based on a density functional approach.

  3. The curvature of semidirect product groups associated with two-component Hunter-Saxton systems

    Energy Technology Data Exchange (ETDEWEB)

    Kohlmann, Martin, E-mail: kohlmann@ifam.uni-hannover.de [Institute for Applied Mathematics, University of Hannover, D-30167 Hannover (Germany)

    2011-06-03

    In this paper, we study two-component versions of the periodic Hunter-Saxton equation and its {mu}-variant. Considering both equations as a geodesic flow on the semidirect product of the circle diffeomorphism group Diff(S) with a space of scalar functions on S we show that both equations are locally well posed. The main result of this paper is that the sectional curvature associated with the 2HS is constant and positive and that 2{mu}HS allows for a large subspace of positive sectional curvature. The issues of this paper are related to some of the results for 2CH and 2DP presented in Escher et al (2011 J. Geom. Phys. 61 436-52).

  4. Phase diagram of two-component bosons on an optical lattice

    Energy Technology Data Exchange (ETDEWEB)

    Altman, Ehud; Hofstetter, Walter; Demler, Eugene; Lukin, Mikhail D [Department of Physics, Harvard University, Cambridge, MA 02138 (United States)

    2003-09-01

    We present a theoretical analysis of the phase diagram of two-component bosons on an optical lattice. A new formalism is developed which treats the effective spin interactions in the Mott and superfluid phases on the same footing. Using this new approach we chart the phase boundaries of the broken spin symmetry states up to the Mott to superfluid transition and beyond. Near the transition point, the magnitude of spin exchange can be very large, which facilitates the experimental realization of spin-ordered states. We find that spin and quantum fluctuations have a dramatic effect on the transition, making it first order in extended regions of the phase diagram. When each species is at integer filling, an additional phase transition may occur, from a spin-ordered insulator to a Mott insulator with no broken symmetries. We determine the phase boundaries in this regime and show that this is essentially a Mott transition in the spin sector.

  5. Two-component mixture model: Application to palm oil and exchange rate

    Science.gov (United States)

    Phoong, Seuk-Yen; Ismail, Mohd Tahir; Hamzah, Firdaus Mohamad

    2014-12-01

    Palm oil is a seed crop which is widely adopt for food and non-food products such as cookie, vegetable oil, cosmetics, household products and others. Palm oil is majority growth in Malaysia and Indonesia. However, the demand for palm oil is getting growth and rapidly running out over the years. This phenomenal cause illegal logging of trees and destroy the natural habitat. Hence, the present paper investigates the relationship between exchange rate and palm oil price in Malaysia by using Maximum Likelihood Estimation via Newton-Raphson algorithm to fit a two components mixture model. Besides, this paper proposes a mixture of normal distribution to accommodate with asymmetry characteristics and platykurtic time series data.

  6. Special relativistic magnetohydrodynamic simulation of two-component outflow powered by magnetic explosion on compact stars

    Science.gov (United States)

    Matsumoto, Jin; Masada, Youhei; Asano, Eiji; Shibata, Kazunari

    2011-06-01

    The nonlinear dynamics of the outflow driven by magnetic explosion on the surface of compact object is investigated through special relativistic magnetohydrodynamic simulations. We adopt, as an initial equilibrium state, a spherical stellar object embedded in the hydrostatic plasma which has a density ρ(r) ~ r-α and is threaded by a dipole magnetic field. The injection of magnetic energy at the surface of compact star breaks the dynamical equilibrium and triggers two-component outflow. At the early evolutionary stage, the magnetic pressure increases rapidly in time around the stellar surface, initiating a magnetically driven outflow. Then it excites a strong forward shock, shock driven outflow. The expansion velocity of the magnetically driven outflow is characterized by the Alfvén velocity on the stellar surface, and follows a simple scaling relation υmag ~ υA1/2. When the initial density profile declines steeply with radius, the strong shock is accelerated self-similarly to relativistic velocity ahead of the magnetically driven component. We find that the evolution of the strong forward shock can be described by a self-similar relation Γsh ~ rsh, where Γsh is the Lorentz factor of the plasma measured at the shock surface rsh. It should be stressed that the pure hydrodynamic process is responsible for the acceleration of the shock driven outflow. Our two-component outflow model, which is the natural outcome of the magnetic explosion, would deepen the understanding of the magnetic active phenomena on various magnetized stellar objects.

  7. Phosphate sink containing two-component signaling systems as tunable threshold devices.

    Directory of Open Access Journals (Sweden)

    Munia Amin

    2014-10-01

    Full Text Available Synthetic biology aims to design de novo biological systems and reengineer existing ones. These efforts have mostly focused on transcriptional circuits, with reengineering of signaling circuits hampered by limited understanding of their systems dynamics and experimental challenges. Bacterial two-component signaling systems offer a rich diversity of sensory systems that are built around a core phosphotransfer reaction between histidine kinases and their output response regulator proteins, and thus are a good target for reengineering through synthetic biology. Here, we explore the signal-response relationship arising from a specific motif found in two-component signaling. In this motif, a single histidine kinase (HK phosphotransfers reversibly to two separate output response regulator (RR proteins. We show that, under the experimentally observed parameters from bacteria and yeast, this motif not only allows rapid signal termination, whereby one of the RRs acts as a phosphate sink towards the other RR (i.e. the output RR, but also implements a sigmoidal signal-response relationship. We identify two mathematical conditions on system parameters that are necessary for sigmoidal signal-response relationships and define key parameters that control threshold levels and sensitivity of the signal-response curve. We confirm these findings experimentally, by in vitro reconstitution of the one HK-two RR motif found in the Sinorhizobium meliloti chemotaxis pathway and measuring the resulting signal-response curve. We find that the level of sigmoidality in this system can be experimentally controlled by the presence of the sink RR, and also through an auxiliary protein that is shown to bind to the HK (yielding Hill coefficients of above 7. These findings show that the one HK-two RR motif allows bacteria and yeast to implement tunable switch-like signal processing and provides an ideal basis for developing threshold devices for synthetic biology applications.

  8. A new pair of hard-soft plastic combination for precision manufacturing of two component plastic parts

    DEFF Research Database (Denmark)

    Islam, Aminul; Hansen, Hans Nørgaard; Marhöfer, David Maximilian

    2011-01-01

    Two component (2k) injection moulding is growing rapidly even in the field of precision micro moulding. Besides combining different material properties in the same product, two component moulding can eliminate many assembly steps in manufacturing process chain. One of the biggest technical...... challenges associated with 2k moulding is the unavailability of suitable two component material combinations which can meet the diverse requirement from product and process point of view. This paper presents a new pair of commercial polymer materials (BASF Ultramid A3EG10 and Kraiburg TPE Thermolast K TC5PCZ......-of-the-art two component micro moulding machine named Formica Plast from Desma Tec. The tests performed on the demonstrator showed potential for the material pair to be used in high precision two component moulding applications. The adhesion between the two materials, replication quality of the 2k part, sealing...

  9. Regularization in kernel learning

    CERN Document Server

    Mendelson, Shahar; 10.1214/09-AOS728

    2010-01-01

    Under mild assumptions on the kernel, we obtain the best known error rates in a regularized learning scenario taking place in the corresponding reproducing kernel Hilbert space (RKHS). The main novelty in the analysis is a proof that one can use a regularization term that grows significantly slower than the standard quadratic growth in the RKHS norm.

  10. Regular database update logics

    NARCIS (Netherlands)

    Spruit, Paul; Wieringa, Roel; Meyer, John-Jules

    2001-01-01

    We study regular first-order update logic (FUL), which is a variant of regular dynamic logic in which updates to function symbols as well as to predicate symbols are possible. We fi1rst study FUL without making assumptions about atomic updates. Second, we look at relational algebra update logic (RAU

  11. Stenotrophomonas maltophilia PhoP, a Two-Component Response Regulator, Involved in Antimicrobial Susceptibilities.

    Directory of Open Access Journals (Sweden)

    Ming-Che Liu

    Full Text Available Stenotrophomonas maltophilia, a gram-negative bacterium, has increasingly emerged as an important nosocomial pathogen. It is well-known for resistance to a variety of antimicrobial agents including cationic antimicrobial polypeptides (CAPs. Resistance to polymyxin B, a kind of CAPs, is known to be controlled by the two-component system PhoPQ. To unravel the role of PhoPQ in polymyxin B resistance of S. maltophilia, a phoP mutant was constructed. We found MICs of polymyxin B, chloramphenicol, ampicillin, gentamicin, kanamycin, streptomycin and spectinomycin decreased 2-64 fold in the phoP mutant. Complementation of the phoP mutant by the wild-type phoP gene restored all of the MICs to the wild type levels. Expression of PhoP was shown to be autoregulated and responsive to Mg2+ levels. The polymyxin B and gentamicin killing tests indicated that pretreatment of low Mg2+ can protect the wild-type S. maltophilia from killing but not phoP mutant. Interestingly, we found phoP mutant had a decrease in expression of SmeZ, an efflux transporter protein for aminoglycosides in S. maltophilia. Moreover, phoP mutant showed increased permeability in the cell membrane relative to the wild-type. In summary, we demonstrated the two-component regulator PhoP of S. maltophilia is involved in antimicrobial susceptibilities and low Mg2+ serves as a signal for triggering the pathway. Both the alteration in membrane permeability and downregulation of SmeZ efflux transporter in the phoP mutant contributed to the increased drug susceptibilities of S. maltophilia, in particular for aminoglycosides. This is the first report to describe the role of the Mg2+-sensing PhoP signaling pathway of S. maltophilia in regulation of the SmeZ efflux transporter and in antimicrobial susceptibilities. This study suggests PhoPQ TCS may serve as a target for development of antimicrobial agents against multidrug-resistant S. maltophilia.

  12. The Two-Component Signal Transduction System VxrAB Positively Regulates Vibrio cholerae Biofilm Formation.

    Science.gov (United States)

    Teschler, Jennifer K; Cheng, Andrew T; Yildiz, Fitnat H

    2017-09-15

    Two-component signal transduction systems (TCSs), typically composed of a sensor histidine kinase (HK) and a response regulator (RR), are the primary mechanism by which pathogenic bacteria sense and respond to extracellular signals. The pathogenic bacterium Vibrio cholerae is no exception and harbors 52 RR genes. Using in-frame deletion mutants of each RR gene, we performed a systematic analysis of their role in V. cholerae biofilm formation. We determined that 7 RRs impacted the expression of an essential biofilm gene and found that the recently characterized RR, VxrB, regulates the expression of key structural and regulatory biofilm genes in V. choleraevxrB is part of a 5-gene operon, which contains the cognate HK vxrA and three genes of unknown function. Strains carrying ΔvxrA and ΔvxrB mutations are deficient in biofilm formation, while the ΔvxrC mutation enhances biofilm formation. The overexpression of VxrB led to a decrease in motility. We also observed a small but reproducible effect of the absence of VxrB on the levels of cyclic di-GMP (c-di-GMP). Our work reveals a new function for the Vxr TCS as a regulator of biofilm formation and suggests that this regulation may act through key biofilm regulators and the modulation of cellular c-di-GMP levels.IMPORTANCE Biofilms play an important role in the Vibrio cholerae life cycle, providing protection from environmental stresses and contributing to the transmission of V. cholerae to the human host. V. cholerae can utilize two-component systems (TCS), composed of a histidine kinase (HK) and a response regulator (RR), to regulate biofilm formation in response to external cues. We performed a systematic analysis of V. cholerae RRs and identified a new regulator of biofilm formation, VxrB. We demonstrated that the VxrAB TCS is essential for robust biofilm formation and that this system may regulate biofilm formation via its regulation of key biofilm regulators and cyclic di-GMP levels. This research furthers our

  13. Two-component coupled KdV equations and its connection with the generalized Harry Dym equations

    Energy Technology Data Exchange (ETDEWEB)

    Popowicz, Ziemowit, E-mail: ziemek@ift.uni.wroc.pl [Institute of Theoretical Physics, University of Wrocław, Wrocław pl. M. Borna 9, 50-205 Wrocław (Poland)

    2014-01-15

    It is shown that three different Lax operators in the Dym hierarchy produce three generalized coupled Harry Dym equations. These equations transform, via the reciprocal link, to the coupled two-component Korteweg de Vries (KdV) system. The first equation gives us known integrable two-component KdV system, while the second reduces to the known symmetrical two-component KdV equation. The last one reduces to the Drienfeld-Sokolov equation. This approach gives us new Lax representation for these equations.

  14. Two-component coupled KdV equations and its connection with the generalized Harry Dym equations

    Science.gov (United States)

    Popowicz, Ziemowit

    2014-01-01

    It is shown that three different Lax operators in the Dym hierarchy produce three generalized coupled Harry Dym equations. These equations transform, via the reciprocal link, to the coupled two-component Korteweg de Vries (KdV) system. The first equation gives us known integrable two-component KdV system, while the second reduces to the known symmetrical two-component KdV equation. The last one reduces to the Drienfeld-Sokolov equation. This approach gives us new Lax representation for these equations.

  15. Regularization by External Variables

    DEFF Research Database (Denmark)

    Bossolini, Elena; Edwards, R.; Glendinning, P. A.

    2016-01-01

    Regularization was a big topic at the 2016 CRM Intensive Research Program on Advances in Nonsmooth Dynamics. There are many open questions concerning well known kinds of regularization (e.g., by smoothing or hysteresis). Here, we propose a framework for an alternative and important kind of regula...... of regularization, by external variables that shadow either the state or the switch of the original system. The shadow systems are derived from and inspired by various applications in electronic control, predator-prey preference, time delay, and genetic regulation....

  16. Phylogenetic Classification Of Bartonella Species By Comparing The Two-Component System Response Regulator Feup Sequences

    Directory of Open Access Journals (Sweden)

    Mhamad Abou-Hamdan

    2015-08-01

    Full Text Available Abstract The bacterial genus Bartonella is classified in the alpha-2 Proteobacteria on the basis of 16S rDNA sequence comparison. The Bartonella two-component system feuPQ is found in nearly all bacterial species. We investigated the usefulness of the response regulator feuP gene sequence in the classification of 18 well characterized Bartonella species. Phylogenetic relationships were inferred using parsimony neighbour-joining and maximum-likelihood methods. Reliable classifications of most of the studied species were obtained. Bartonella were divided into two supported clades containing two supported clusters each. These results were similar to our previous data obtained with groEL ftsZ and ribC genes sequences. The wide range of feuP DNA sequence similarity 78.6 to 96.5 among Bartonella species makes it a promising candidate for multi-locus sequence typing MLST of clinical isolates. This is the first report proving the usefulness of feuP sequences in bartonellae classification at the species level.

  17. Direct molecular dynamics simulation of liquid-solid phase equilibria for two-component plasmas.

    Science.gov (United States)

    Schneider, A S; Hughto, J; Horowitz, C J; Berry, D K

    2012-06-01

    We determine the liquid-solid phase diagram for carbon-oxygen and oxygen-selenium plasma mixtures using two-phase molecular dynamics simulations. We identify liquid, solid, and interface regions using a bond angle metric. To study finite-size effects, we perform 27,648- and 55,296-ion simulations. To help monitor nonequilibrium effects, we calculate diffusion constants D(i). For the carbon-oxygen system we find that D(O) for oxygen ions in the solid is much smaller than D(C) for carbon ions and that both diffusion constants are 80 or more times smaller than diffusion constants in the liquid phase. There is excellent agreement between our carbon-oxygen phase diagram and that predicted by Medin and Cumming. This suggests that errors from finite-size and nonequilibrium effects are small and that the carbon-oxygen phase diagram is now accurately known. The oxygen-selenium system is a simple two-component model for more complex rapid proton capture nucleosynthesis ash compositions for an accreting neutron star. Diffusion of oxygen, in a predominantly selenium crystal, is remarkably fast, comparable to diffusion in the liquid phase. We find a somewhat lower melting temperature for the oxygen-selenium system than that predicted by Medin and Cumming. This is probably because of electron screening effects.

  18. Comparative Analysis of Two-component Signal Transduction System in Two Streptomycete Genomes

    Institute of Scientific and Technical Information of China (English)

    Wu WEI; Yixue LI; Weihua WANG; Zhiwei CAO; Hong YU; Xiaojing WANG; Jing ZHAO; Hao TAN; Hao XU; Weihong JIANG

    2007-01-01

    Species of the genus Streptomyces are major bacteria responsible for producing most natural antibiotics. Streptomyces coelicolor A3(2) and Streptomyces avermitilis were sequenced in 2002 and 2003,respectively. Two-component signal transduction systems (TCSs), consisting of a histidine sensor kinase (SK) and a cognate response regulator (RR), form the most common mechanism of transmembrane signal transduction in prokaryotes. TCSs in S. coelicolor A3(2) have been analyzed in detail. Here, we identify and classify the SK and RR of S. avermitilis and compare the TCSs with those of S. coelicolor A3(2) by computational approaches. Phylogenetic analysis of the cognate SK-RR pairs of the two species indicated that the cognate SK-RR pairs fall into four classes according to the distribution of their orthologs in other organisms. In addition to the cognate SK-RR pairs, some potential partners of non-cognate SK-RR were found, including those of unpaired SK and orphan RR and the cross-talk between different components in either strain. Our study provides new clues for further exploration of the molecular regulation mechanism of streptomycetes with industrial importance.

  19. A feasibility study of using two-component polyurethane adhesive in constructing wooden structures

    Institute of Scientific and Technical Information of China (English)

    Mohammad Derikvand; Ghanbar Ebrahimi; Mehdi Tajvidi

    2014-01-01

    This investigation was conducted to determine the feasibility of using a two-component polyurethane (PUR) adhesive, with special waterproof properties, in constructing wooden structures. We designed and conducted tests to compare the shear strength and adhesion per-formance of PUR with polyvinyl acetate (PVAc) adhesive on block-shear specimens constructed of oriental beech (Fagus orientalis L.), fir (Abies alba Mill.), poplar (Populus deltoides Bartr.), white oak (Quercus alba L.), sycamore (Platanus orientalis L.) and white walnut (Juglans cinerea L.). The values of the percentage of wood failure were also determined in specimens constructed with each adhesive. The highest shear strength values of both adhesives were obtained in specimens constructed of beech, while the lowest shear strength values were obtained in fir and poplar specimens. Average shear strength of the PUR adhesive was 16.5%higher than that of the PVAc adhesive. Specimens constructed of fir, poplar and sycamore were characterised by the highest percentages of wood failure, whereas the lowest average percentages of wood failure were obtained in beech and oak specimens. With the exception of oak specimens, there was no statistically significant difference between per-centage of wood failure among the PUR and PVAc adhesives. Generally, the PUR adhesive showed an acceptable adhesion performance on wood materials used in our study.

  20. The Evolution of Two-Component Systems in Bacteria RevealsDifferent Strategies for Niche Adaptation

    Energy Technology Data Exchange (ETDEWEB)

    Alm, Eric; Huang, Katherine; Arkin, Adam

    2006-09-13

    Two-component systems including histidine protein kinasesrepresent the primary signal transduction paradigm in prokaryoticorganisms. To understand how these systems adapt to allow organisms todetect niche-specific signals, we analyzed the phylogenetic distributionof nearly 5000 histidine protein kinases from 207 sequenced prokaryoticgenomes. We found that many genomes carry a large repertoire of recentlyevolved signaling genes, which may reflect selective pressure to adapt tonew environmental conditions. Both lineage-specific gene family expansionand horizontal gene transfer play major roles in the introduction of newhistidine kinases into genomes; however, there are differences in howthese two evolutionary forces act. Genes imported via horizontal transferare more likely to retain their original functionality as inferred from asimilar complement of signaling domains, while gene family expansionaccompanied by domain shuffling appears to be a major source of novelgenetic diversity. Family expansion is the dominantsource of newhistidine kinase genes in the genomes most enriched in signalingproteins, and detailed analysis reveals that divergence in domainstructure and changes in expression patterns are hallmarks of recentexpansions. Finally, while these two modes of gene acquisition arewidespread across bacterial taxa, there are clear species-specificpreferences for which mode is used.

  1. Transcriptional and proteomic analyses of two-component response regulators in multidrug-resistant Mycobacterium tuberculosis.

    Science.gov (United States)

    Zhou, Lei; Yang, Liu; Zeng, Xianfei; Danzheng, Jiacuo; Zheng, Qing; Liu, Jiayun; Liu, Feng; Xin, Yijuan; Cheng, Xiaodong; Su, Mingquan; Ma, Yueyun; Hao, Xiaoke

    2015-07-01

    Two-component systems (TCSs) have been reported to exhibit a sensing and responding role under drug stress that induces drug resistance in several bacterial species. However, the relationship between TCSs and multidrug resistance in Mycobacterium tuberculosis has not been comprehensively analysed to date. In this study, 90 M. tuberculosis clinical isolates were analysed using 15-loci mycobacterial interspersed repetitive unit (MIRU)-variable number tandem repeat (VNTR) typing and repetitive extragenic palindromic (rep)-PCR-based DNA fingerprinting. The results showed that all of the isolates were of the Beijing lineage, and strains with a drug-susceptible phenotype had not diverged into similar genotype clusters. Expression analysis of 13 response regulators of TCSs using real-time PCR and tandem mass spectrometry (MS/MS) proteomic analysis demonstrated that four response regulator genes (devR, mtrA, regX3 and Rv3143) were significantly upregulated in multidrug-resistant (MDR) strains compared with the laboratory strain H37Rv as well as drug-susceptible and isoniazid-monoresistant strains (PMycobacterium bovis BCG did not alter its sensitivity to the four antitubercular drugs. This suggests that upregulation of devR, which is common in MDR-TB strains, might be induced by drug stress and hypoxic adaptation following the acquisition of multidrug resistance.

  2. Singular solutions of a modified two-component Camassa-Holm equation.

    Science.gov (United States)

    Holm, Darryl D; O Náraigh, Lennon; Tronci, Cesare

    2009-01-01

    The Camassa-Holm (CH) equation is a well-known integrable equation describing the velocity dynamics of shallow water waves. This equation exhibits spontaneous emergence of singular solutions (peakons) from smooth initial conditions. The CH equation has been recently extended to a two-component integrable system (CH2), which includes both velocity and density variables in the dynamics. Although possessing peakon solutions in the velocity, the CH2 equation does not admit singular solutions in the density profile. We modify the CH2 system to allow a dependence on the average density as well as the pointwise density. The modified CH2 system (MCH2) does admit peakon solutions in the velocity and average density. We analytically identify the steepening mechanism that allows the singular solutions to emerge from smooth spatially confined initial data. Numerical results for the MCH2 system are given and compared with the pure CH2 case. These numerics show that the modification in the MCH2 system to introduce the average density has little short-time effect on the emergent dynamical properties. However, an analytical and numerical study of pairwise peakon interactions for the MCH2 system shows a different asymptotic feature. Namely, besides the expected soliton scattering behavior seen in overtaking and head-on peakon collisions, the MCH2 system also allows the phase shift of the peakon collision to diverge in certain parameter regimes.

  3. ACOUSTIC WAVES EMISSION IN THE TWO-COMPONENT HEREDITARY-ELASTIC MEDIUM

    Directory of Open Access Journals (Sweden)

    V. S. Polenov

    2014-01-01

    Full Text Available Summary. On the dynamics of two-component media a number of papers, which address the elastic waves in a homogeneous, unbounded fluid-saturated porous medium. In other studies address issues of dissipative processes in harmonic deformation hereditary elastic medium. In the article the dissipative processes of the viscoelastic porous medium, which hereditary properties are described by the core relaxation fractional exponential function U.N. Rabotnova integro-differential Boltzmann-Volterr ratio, harmonic deformation by the straining saturated incompressible liquid are investigated. Speed of wave propagation, absorption coefficient, mechanical loss tangent, logarithmic decrement, depending on fractional parameter γ, determining formulas received. The frequency logarithm and temperature graph dependences with the goal fractional parameter are constructed. Shows the dependences velocity and attenuation coefficient of the tangent of the phase angle of the logarithm of the temperature, and the dependence of the attenuation coefficient of the logarithm of the frequency. Dependencies the speed and the tangent of the phase angle of the frequency identical function of the logarithm of temperature.

  4. A two component system is involved in acid adaptation of Lactobacillus delbrueckii subsp. bulgaricus.

    Science.gov (United States)

    Cui, Yanhua; Liu, Wei; Qu, Xiaojun; Chen, Zhangting; Zhang, Xu; Liu, Tong; Zhang, Lanwei

    2012-05-20

    The Gram-positive bacterium Lactobacillus delbrueckii subsp. bulgaricus is of vital importance to the food industry, especially to the dairy industry. Two component systems (TCSs) are one of the most important mechanisms for environmental sensing and signal transduction in the majority of Gram-positive and Gram-negative bacteria. A typical TCS consists of a histidine protein kinase (HPK) and a cytoplasmic response regulator (RR). To investigate the functions of TCSs during acid adaptation in L. bulgaricus, we used quantitative PCR to reveal how TCSs expression changes during acid adaptation. Two TCSs (JN675228/JN675229 and JN675230/JN675231) and two HPKs (JN675236 and JN675240) were induced during acid adaptation. These TCSs were speculated to be related with the acid adaptation ability of L. bulgaricus. The mutants of JN675228/JN675229 were constructed in order to investigate the functions of JN675228/JN675229. The mutants showed reduced acid adaptation compared to that of wild type, and the complemented strains were similar to the wild-type strain. These observations suggested that JN675228 and JN675229 were involved in acid adaptation in L. bulgaricus. The interaction between JN675228 and JN675229 was identified by means of yeast two-hybrid system. The results indicated there is interaction between JN675228 and JN675229.

  5. Freshwater DOM quantity and quality from a two-component model of UV absorbance

    Science.gov (United States)

    Carter, Heather T.; Tipping, Edward; Koprivnjak, Jean-Francois; Miller, Matthew P.; Cookson, Brenda; Hamilton-Taylor, John

    2012-01-01

    We present a model that considers UV-absorbing dissolved organic matter (DOM) to consist of two components (A and B), each with a distinct and constant spectrum. Component A absorbs UV light strongly, and is therefore presumed to possess aromatic chromophores and hydrophobic character, whereas B absorbs weakly and can be assumed hydrophilic. We parameterised the model with dissolved organic carbon concentrations [DOC] and corresponding UV spectra for c. 1700 filtered surface water samples from North America and the United Kingdom, by optimising extinction coefficients for A and B, together with a small constant concentration of non-absorbing DOM (0.80 mg DOC L-1). Good unbiased predictions of [DOC] from absorbance data at 270 and 350 nm were obtained (r2 = 0.98), the sum of squared residuals in [DOC] being reduced by 66% compared to a regression model fitted to absorbance at 270 nm alone. The parameterised model can use measured optical absorbance values at any pair of suitable wavelengths to calculate both [DOC] and the relative amounts of A and B in a water sample, i.e. measures of quantity and quality. Blind prediction of [DOC] was satisfactory for 9 of 11 independent data sets (181 of 213 individual samples).

  6. Monte Carlo simulations of two-component drop growth by stochastic coalescence

    Science.gov (United States)

    Alfonso, L.; Raga, G. B.; Baumgardner, D.

    2009-02-01

    The evolution of two-dimensional drop distributions is simulated in this study using a Monte Carlo method. The stochastic algorithm of Gillespie (1976) for chemical reactions in the formulation proposed by Laurenzi et al. (2002) was used to simulate the kinetic behavior of the drop population. Within this framework, species are defined as droplets of specific size and aerosol composition. The performance of the algorithm was checked by a comparison with the analytical solutions found by Lushnikov (1975) and Golovin (1963) and with finite difference solutions of the two-component kinetic collection equation obtained for the Golovin (sum) and hydrodynamic kernels. Very good agreement was observed between the Monte Carlo simulations and the analytical and numerical solutions. A simulation for realistic initial conditions is presented for the hydrodynamic kernel. As expected, the aerosol mass is shifted from small to large particles due to collection process. This algorithm could be extended to incorporate various properties of clouds such several crystals habits, different types of soluble CCN, particle charging and drop breakup.

  7. Monte Carlo simulations of two-component drop growth by stochastic coalescence

    Directory of Open Access Journals (Sweden)

    L. Alfonso

    2009-02-01

    Full Text Available The evolution of two-dimensional drop distributions is simulated in this study using a Monte Carlo method. The stochastic algorithm of Gillespie (1976 for chemical reactions in the formulation proposed by Laurenzi et al. (2002 was used to simulate the kinetic behavior of the drop population. Within this framework, species are defined as droplets of specific size and aerosol composition. The performance of the algorithm was checked by a comparison with the analytical solutions found by Lushnikov (1975 and Golovin (1963 and with finite difference solutions of the two-component kinetic collection equation obtained for the Golovin (sum and hydrodynamic kernels. Very good agreement was observed between the Monte Carlo simulations and the analytical and numerical solutions. A simulation for realistic initial conditions is presented for the hydrodynamic kernel. As expected, the aerosol mass is shifted from small to large particles due to collection process. This algorithm could be extended to incorporate various properties of clouds such several crystals habits, different types of soluble CCN, particle charging and drop breakup.

  8. Thermoset nanocomposites from two-component waterborne polyurethanes and cellulose whiskers.

    Science.gov (United States)

    Wu, Guo-min; Chen, Jian; Huo, Shu-ping; Liu, Gui-feng; Kong, Zhen-wu

    2014-05-25

    We prepared thermoset nancomposites from biomass-based two-component waterborne polyurethane (2K-WPU) and cellulose namowhiskers (CNWs). Due to the formation of hydrogen bonds, the viscosity of 2K-WPU dispersion was found to be increased with the addition of CNWs. SEM images showed "sea-island structure" corresponding to the microphase separation between CNWs nano-filler and the 2K-WPU matrix. The α-relaxation temperature (Tα) and glass transition temperature (Tg) increased with the increase of CNWs content, which was due to the formation of a rigid CNWs nano-phase acting as crosslinking points in the 2K-WPU matrix. Mechanical properties from tensile test showed Young's modulus and tensile strength of 2K-WPU/CNWs nanocomposites were reinforced by the addition of CNWs. Thermo-stability of 2K-WPU/CNWs nanocomposites decreased slightly with the increase of CNWs content, which could be attributed to the increased thermal conductivity of the material after adding CNWs. Copyright © 2014 Elsevier Ltd. All rights reserved.

  9. Photonic band-gap properties for two-component slow light

    CERN Document Server

    Ruseckas, J; Juzeliunas, G; Unanyan, R G; Otterbach, J; Fleischhauer, M

    2011-01-01

    We consider two-component "spinor" slow light in an ensemble of atoms coherently driven by two pairs of counterpropagating control laser fields in a double tripod-type linkage scheme. We derive an equation of motion for the spinor slow light (SSL) representing an effective Dirac equation for a massive particle with the mass determined by the two-photon detuning. By changing the detuning the atomic medium acts as a photonic crystal with a controllable band gap. If the frequency of the incident probe light lies within the band gap, the light tunnels through the sample. For frequencies outside the band gap, the transmission probability oscillates with increasing length of the sample. In both cases the reflection takes place into the complementary mode of the probe field. We investigate the influence of the finite excited state lifetime on the transmission and reflection coefficients of the probe light. We discuss possible experimental implementations of the SSL using alkali atoms such as Rubidium or Sodium.

  10. The two-component model of memory development, and its potential implications for educational settings.

    Science.gov (United States)

    Sander, Myriam C; Werkle-Bergner, Markus; Gerjets, Peter; Shing, Yee Lee; Lindenberger, Ulman

    2012-02-15

    We recently introduced a two-component model of the mechanisms underlying age differences in memory functioning across the lifespan. According to this model, memory performance is based on associative and strategic components. The associative component is relatively mature by middle childhood, whereas the strategic component shows a maturational lag and continues to develop until young adulthood. Focusing on work from our own lab, we review studies from the domains of episodic and working memory informed by this model, and discuss their potential implications for educational settings. The episodic memory studies uncover the latent potential of the associative component in childhood by documenting children's ability to greatly improve their memory performance following mnemonic instruction and training. The studies on working memory also point to an immature strategic component in children whose operation is enhanced under supportive conditions. Educational settings may aim at fostering the interplay between associative and strategic components. We explore possible routes towards this goal by linking our findings to recent trends in research on instructional design. Copyright © 2011 Elsevier Ltd. All rights reserved.

  11. Rotational properties of two-component Bose gases in the lowest Landau level

    Science.gov (United States)

    Meyer, Marius; Sreejith, Ganesh Jaya; Viefers, Susanne

    2015-03-01

    We study the rotational (yrast) spectra of dilute two-component atomic Bose gases in the low angular momentum regime, assuming equal interspecies and intraspecies interaction. Our analysis employs the composite fermion (CF) approach including a pseudospin degree of freedom. While the CF approach is not a priori expected to work well in this angular momentum regime, we show that composite fermion diagonalization gives remarkably accurate approximations to low energy states in the spectra. For angular momenta 0 = N), we find that the CF states span the full Hilbert space and provide a convenient set of basis states which, by construction, are eigenstates of the symmetries of the Hamiltonian. Within this CF basis, we identify a subset of the basis states with the lowest Λ-level kinetic energy. Diagonalization within this significally smaller subspace constitutes a major computational simplification and provides very close approximations to ground states and a number of low-lying states within each pseudospin and angular momentum channel. This work was financially supported by the Research Council of Norway and by NORDITA.

  12. Bioorthogonal two-component drug delivery in HER2(+) breast cancer mouse models

    Science.gov (United States)

    Hapuarachchige, Sudath; Kato, Yoshinori; Artemov, Dmitri

    2016-04-01

    The HER2 receptor is overexpressed in approximately 20% of breast cancers and is associated with tumorigenesis, metastasis, and a poor prognosis. Trastuzumab is a first-line targeted drug used against HER2(+) breast cancers; however, at least 50% of HER2(+) tumors develop resistance to trastuzumab. To treat these patients, trastuzumab-based antibody-drug conjugates (ACDs) have been developed and are currently used in the clinic. Despite their high efficacy, the long circulation half-life and non-specific binding of cytotoxic ADCs can result in systemic toxicity. In addition, standard ADCs do not provide an image-guided mode of administration. Here, we have developed a two-component, two-step, pre-targeting drug delivery system integrated with image guidance to circumvent these issues. In this strategy, HER2 receptors are pre-labeled with a functionalized trastuzumab antibody followed by the delivery of drug-loaded nanocarriers. Both components are cross-linked by multiple bioorthogonal click reactions in situ on the surface of the target cell and internalized as nanoclusters. We have explored the efficacy of this delivery strategy in HER2(+) human breast cancer models. Our therapeutic study confirms the high therapeutic efficacy of the new delivery system, with no significant toxicity.

  13. Vortices with scalar condensates in two-component Ginzburg-Landau systems

    CERN Document Server

    Forgacs, Peter

    2016-01-01

    In a class of two-component Ginzburg-Landau models (TCGL) with a U(1)$\\times$U(1) symmetric potential, vortices with a condensate at their core may have significantly lower energies than the Abrikosov-Nielsen-Olesen (ANO) ones. On the example of liquid metallic hydrogen (LMH) above the critical temperature for protons we show that the ANO vortices become unstable against core-condensation, while condensate-core (CC) vortices are stable. For LMH the ratio of the masses of the two types of condensates, $M=m_2/m_1$ is large, and then as a consequence the energy per flux quantum of the vortices, $E_n/n$ becomes a non-monotonous function of the number of flux quanta, $n$. This leads to yet another manifestation of neither type 1 nor type 2, (type 1.5) superconductivity: superconducting and normal domains coexist while various "giant" vortices form. We note that LMH provides a particularly clean example of type 1.5 state as the interband coupling between electronic and protonic Cooper-pairs is forbidden.

  14. Two-component membrane material properties and domain formation from dissipative particle dynamics.

    Science.gov (United States)

    Illya, G; Lipowsky, R; Shillcock, J C

    2006-09-21

    The material parameters (area stretch modulus and bending rigidity) of two-component amphiphilic membranes are determined from dissipative particle dynamics simulations. The preferred area per molecule for each species is varied so as to produce homogeneous mixtures or nonhomogeneous mixtures that form domains. If the latter mixtures are composed of amphiphiles with the same tail length, but different preferred areas per molecule, their material parameters increase monotonically as a function of composition. By contrast, mixtures of amphiphiles that differ in both tail length and preferred area per molecule form both homogeneous and nonhomogeneous mixtures that both exhibit smaller values of their material properties compared to the corresponding pure systems. When the same nonhomogeneous mixtures of amphiphiles are assembled into planar membrane patches and vesicles, the resulting domain shapes are different when the bending rigidities of the domains are sufficiently different. Additionally, both bilayer and monolayer domains are observed in vesicles. We conclude that the evolution of the domain shapes is influenced by the high curvature of the vesicles in the simulation, a result that may be relevant for biological vesicle membranes.

  15. Modified Baryonic Dynamics: two-component cosmological simulations with light sterile neutrinos

    Energy Technology Data Exchange (ETDEWEB)

    Angus, G.W.; Gentile, G. [Department of Physics and Astrophysics, Vrije Universiteit Brussel, Pleinlaan 2, Brussels, 1050 Belgium (Belgium); Diaferio, A. [Dipartimento di Fisica, Università di Torino, Via P. Giuria 1, Torino, I-10125 Italy (Italy); Famaey, B. [Observatoire astronomique de Strasbourg, CNRS UMR 7550, Université de Strasbourg, 11 rue de l' Université, Strasbourg, F-67000 France (France); Heyden, K.J. van der, E-mail: garry.angus@vub.ac.be, E-mail: diaferio@ph.unito.it, E-mail: benoit.famaey@astro.unistra.fr, E-mail: gianfranco.gentile@ugent.be, E-mail: heyden@ast.uct.ac.za [Astrophysics, Cosmology and Gravity Centre, Dept. of Astronomy, University of Cape Town, Private Bag X3, Rondebosch, 7701 South Africa (South Africa)

    2014-10-01

    In this article we continue to test cosmological models centred on Modified Newtonian Dynamics (MOND) with light sterile neutrinos, which could in principle be a way to solve the fine-tuning problems of the standard model on galaxy scales while preserving successful predictions on larger scales. Due to previous failures of the simple MOND cosmological model, here we test a speculative model where the modified gravitational field is produced only by the baryons and the sterile neutrinos produce a purely Newtonian field (hence Modified Baryonic Dynamics). We use two-component cosmological simulations to separate the baryonic N-body particles from the sterile neutrino ones. The premise is to attenuate the over-production of massive galaxy cluster halos which were prevalent in the original MOND plus light sterile neutrinos scenario. Theoretical issues with such a formulation notwithstanding, the Modified Baryonic Dynamics model fails to produce the correct amplitude for the galaxy cluster mass function for any reasonable value of the primordial power spectrum normalisation.

  16. Modelling elliptical galaxies phase-space constraints on two-component (gamma1,gamma2) models

    CERN Document Server

    Ciotti, L

    1999-01-01

    In the context of the study of the properties of the mutual mass distribution of the bright and dark matter in elliptical galaxies, present a family of two-component, spherical, self-consistent galaxy models, where one density distribution follows a gamma_1 profile, and the other a gamma_2 profile [(gamma_1,gamma_2) models], with different total masses and ``core'' radii. A variable amount of Osipkov-Merritt (radial) orbital anisotropy is allowed in both components. For these models, I derive analytically the necessary and sufficient conditions that the model parameters must satisfy in order to correspond to a physical system. Moreover, the possibility of adding a black hole at the center of radially anisotropic gamma models is discussed, determining analytically a lower limit of the anisotropy radius as a function of gamma. The analytical phase-space distribution function for (1,0) models is presented, together with the solution of the Jeans equations and the quantities entering the scalar virial theorem. It...

  17. P2CS: a two-component system resource for prokaryotic signal transduction research

    Directory of Open Access Journals (Sweden)

    Méjean Vincent

    2009-07-01

    Full Text Available Abstract Background With the escalation of high throughput prokaryotic genome sequencing, there is an ever-increasing need for databases that characterise, catalogue and present data relating to particular gene sets and genomes/metagenomes. Two-component system (TCS signal transduction pathways are the dominant mechanisms by which micro-organisms sense and respond to external as well as internal environmental changes. These systems respond to a wide range of stimuli by triggering diverse physiological adjustments, including alterations in gene expression, enzymatic reactions, or protein-protein interactions. Description We present P2CS (Prokaryotic 2-Component Systems, an integrated and comprehensive database of TCS signal transduction proteins, which contains a compilation of the TCS genes within 755 completely sequenced prokaryotic genomes and 39 metagenomes. P2CS provides detailed annotation of each TCS gene including family classification, sequence features, functional domains, as well as genomic context visualization. To bypass the generic problem of gene underestimation during genome annotation, we also constituted and searched an ORFeome, which improves the recovery of TCS proteins compared to searches on the equivalent proteomes. Conclusion P2CS has been developed for computational analysis of the modular TCSs of prokaryotic genomes and metagenomes. It provides a complete overview of information on TCSs, including predicted candidate proteins and probable proteins, which need further curation/validation. The database can be browsed and queried with a user-friendly web interface at http://www.p2cs.org/.

  18. Physiological Role of Two-Component Signal Transduction Systems in Food-Associated Lactic Acid Bacteria.

    Science.gov (United States)

    Monedero, Vicente; Revilla-Guarinos, Ainhoa; Zúñiga, Manuel

    2017-01-01

    Two-component systems (TCSs) are widespread signal transduction pathways mainly found in bacteria where they play a major role in adaptation to changing environmental conditions. TCSs generally consist of sensor histidine kinases that autophosphorylate in response to a specific stimulus and subsequently transfer the phosphate group to their cognate response regulators thus modulating their activity, usually as transcriptional regulators. In this review we present the current knowledge on the physiological role of TCSs in species of the families Lactobacillaceae and Leuconostocaceae of the group of lactic acid bacteria (LAB). LAB are microorganisms of great relevance for health and food production as the group spans from starter organisms to pathogens. Whereas the role of TCSs in pathogenic LAB (most of them belonging to the family Streptococcaceae) has focused the attention, the roles of TCSs in commensal LAB, such as most species of Lactobacillaceae and Leuconostocaceae, have been somewhat neglected. However, evidence available indicates that TCSs are key players in the regulation of the physiology of these bacteria. The first studies in food-associated LAB showed the involvement of some TCSs in quorum sensing and production of bacteriocins, but subsequent studies have shown that TCSs participate in other physiological processes, such as stress response, regulation of nitrogen metabolism, regulation of malate metabolism, and resistance to antimicrobial peptides, among others. Copyright © 2017 Elsevier Inc. All rights reserved.

  19. The Role of Two-Component Signal Transduction Systems in Staphylococcus aureus Virulence Regulation.

    Science.gov (United States)

    Haag, Andreas F; Bagnoli, Fabio

    2016-01-05

    Staphylococcus aureus is a versatile, opportunistic human pathogen that can asymptomatically colonize a human host but can also cause a variety of cutaneous and systemic infections. The ability of S. aureus to adapt to such diverse environments is reflected in the presence of complex regulatory networks fine-tuning metabolic and virulence gene expression. One of the most widely distributed mechanisms is the two-component signal transduction system (TCS) which allows a pathogen to alter its gene expression profile in response to environmental stimuli. The simpler TCSs consist of only a transmembrane histidine kinase (HK) and a cytosolic response regulator. S. aureus encodes a total of 16 conserved pairs of TCSs that are involved in diverse signalling cascades ranging from global virulence gene regulation (e.g. quorum sensing by the Agr system), the bacterial response to antimicrobial agents, cell wall metabolism, respiration and nutrient sensing. These regulatory circuits are often interconnected and affect each other's expression, thus fine-tuning staphylococcal gene regulation. This manuscript gives an overview of the current knowledge of staphylococcal environmental sensing by TCS and its influence on virulence gene expression and virulence itself. Understanding bacterial gene regulation by TCS can give major insights into staphylococcal pathogenicity and has important implications for knowledge-based drug design and vaccine formulation.

  20. Functional characterization of WalRK: A two-component signal transduction system from Bacillus anthracis

    Directory of Open Access Journals (Sweden)

    Alisha Dhiman

    2014-01-01

    Full Text Available Two-component signal transduction systems (TCS, consisting of a sensor histidine protein kinase and its cognate response regulator, are an important mode of environmental sensing in bacteria. Additionally, they have been found to regulate virulence determinants in several pathogens. Bacillus anthracis, the causative agent of anthrax and a bioterrorism agent, harbours 41 pairs of TCS. However, their role in its pathogenicity has remained largely unexplored. Here, we show that WalRK of B. anthracis forms a functional TCS which exhibits some species-specific functions. Biochemical studies showed that domain variants of WalK, the histidine kinase, exhibit classical properties of autophosphorylation and phosphotransfer to its cognate response regulator WalR. Interestingly, these domain variants also show phosphatase activity towards phosphorylated WalR, thereby making WalK a bifunctional histidine kinase/phosphatase. An in silico regulon determination approach, using a consensus binding sequence from Bacillus subtilis, provided a list of 30 genes that could form a putative WalR regulon in B. anthracis. Further, electrophoretic mobility shift assay was used to show direct binding of purified WalR to the upstream regions of three putative regulon candidates, an S-layer protein EA1, a cell division ABC transporter FtsE and a sporulation histidine kinase KinB3. Our work lends insight into the species-specific functions and mode of action of B. anthracis WalRK.

  1. The evolution of two-component systems in bacteria reveals different strategies for niche adaptation.

    Directory of Open Access Journals (Sweden)

    Eric Alm

    2006-11-01

    Full Text Available Two-component systems including histidine protein kinases represent the primary signal transduction paradigm in prokaryotic organisms. To understand how these systems adapt to allow organisms to detect niche-specific signals, we analyzed the phylogenetic distribution of nearly 5,000 histidine protein kinases from 207 sequenced prokaryotic genomes. We found that many genomes carry a large repertoire of recently evolved signaling genes, which may reflect selective pressure to adapt to new environmental conditions. Both lineage-specific gene family expansion and horizontal gene transfer play major roles in the introduction of new histidine kinases into genomes; however, there are differences in how these two evolutionary forces act. Genes imported via horizontal transfer are more likely to retain their original functionality as inferred from a similar complement of signaling domains, while gene family expansion accompanied by domain shuffling appears to be a major source of novel genetic diversity. Family expansion is the dominant source of new histidine kinase genes in the genomes most enriched in signaling proteins, and detailed analysis reveals that divergence in domain structure and changes in expression patterns are hallmarks of recent expansions. Finally, while these two modes of gene acquisition are widespread across bacterial taxa, there are clear species-specific preferences for which mode is used.

  2. Functional characterization of WalRK: A two-component signal transduction system from Bacillus anthracis.

    Science.gov (United States)

    Dhiman, Alisha; Bhatnagar, Sonika; Kulshreshtha, Parul; Bhatnagar, Rakesh

    2014-01-01

    Two-component signal transduction systems (TCS), consisting of a sensor histidine protein kinase and its cognate response regulator, are an important mode of environmental sensing in bacteria. Additionally, they have been found to regulate virulence determinants in several pathogens. Bacillus anthracis, the causative agent of anthrax and a bioterrorism agent, harbours 41 pairs of TCS. However, their role in its pathogenicity has remained largely unexplored. Here, we show that WalRK of B. anthracis forms a functional TCS which exhibits some species-specific functions. Biochemical studies showed that domain variants of WalK, the histidine kinase, exhibit classical properties of autophosphorylation and phosphotransfer to its cognate response regulator WalR. Interestingly, these domain variants also show phosphatase activity towards phosphorylated WalR, thereby making WalK a bifunctional histidine kinase/phosphatase. An in silico regulon determination approach, using a consensus binding sequence from Bacillus subtilis, provided a list of 30 genes that could form a putative WalR regulon in B. anthracis. Further, electrophoretic mobility shift assay was used to show direct binding of purified WalR to the upstream regions of three putative regulon candidates, an S-layer protein EA1, a cell division ABC transporter FtsE and a sporulation histidine kinase KinB3. Our work lends insight into the species-specific functions and mode of action of B. anthracis WalRK.

  3. [Two-component signal transduction as attractive drug targets in pathogenic bacteria].

    Science.gov (United States)

    Utsumi, Ryutaro; Igarashi, Masayuki

    2012-01-01

    Gene clusters contributing to processes such as cell growth and pathogenicity are often controlled by two-component signal transduction systems (TCSs). TCS consists of a histidine kinase (HK) and a response regulator (RR). TCSs are attractive as drug targets for antimicrobials because many HK and RR genes are coded on the bacterial genome though few are found in lower eukaryotes. The HK/RR signal transduction system is distinct from serine/threonine and tyrosine phosphorylation in higher eukaryotes. Specific inhibitors against TCS systems work differently from conventional antibiotics, and developing them into new drugs that are effective against various drug-resistant bacteria may be possible. Furthermore, inhibitors of TCSs that control virulence factors may reduce virulence without killing the pathogenic bacteria. Previous TCS inhibitors targeting the kinase domain of the histidine kinase sensor suffered from poor selectivity. Recent TCS inhibitors, however, target the sensory domains of the sensors blocking the quorum sensing system, or target the essential response regulator. These new targets are introduced, together with several specific TCSs that have the potential to serve as effective drug targets.

  4. P2CS: a two-component system resource for prokaryotic signal transduction research.

    Science.gov (United States)

    Barakat, Mohamed; Ortet, Philippe; Jourlin-Castelli, Cécile; Ansaldi, Mireille; Méjean, Vincent; Whitworth, David E

    2009-07-15

    With the escalation of high throughput prokaryotic genome sequencing, there is an ever-increasing need for databases that characterise, catalogue and present data relating to particular gene sets and genomes/metagenomes. Two-component system (TCS) signal transduction pathways are the dominant mechanisms by which micro-organisms sense and respond to external as well as internal environmental changes. These systems respond to a wide range of stimuli by triggering diverse physiological adjustments, including alterations in gene expression, enzymatic reactions, or protein-protein interactions. We present P2CS (Prokaryotic 2-Component Systems), an integrated and comprehensive database of TCS signal transduction proteins, which contains a compilation of the TCS genes within 755 completely sequenced prokaryotic genomes and 39 metagenomes. P2CS provides detailed annotation of each TCS gene including family classification, sequence features, functional domains, as well as genomic context visualization. To bypass the generic problem of gene underestimation during genome annotation, we also constituted and searched an ORFeome, which improves the recovery of TCS proteins compared to searches on the equivalent proteomes. P2CS has been developed for computational analysis of the modular TCSs of prokaryotic genomes and metagenomes. It provides a complete overview of information on TCSs, including predicted candidate proteins and probable proteins, which need further curation/validation. The database can be browsed and queried with a user-friendly web interface at http://www.p2cs.org/.

  5. Comparative Genomic Analysis of Two-Component Signal Transduction Systems in Probiotic Lactobacillus casei.

    Science.gov (United States)

    Yu, Shuijing; Peng, Yanping; Chen, Wanyi; Deng, Yangwu; Guo, Yanhua

    2014-09-01

    Lactobacillus casei has traditionally been recognized as a probiotic, thus needing to survive the industrial production processes and transit through the gastrointestinal tract before providing benefit to human health. The two-component signal transduction system (TCS) plays important roles in sensing and reacting to environmental changes, which consists of a histidine kinase (HK) and a response regulator (RR). In this study we identified HKs and RRs of six sequenced L. casei strains. Ortholog analysis revealed 15 TCS clusters (HK-RR pairs), one orphan HKs and three orphan RRs, of which 12 TCS clusters were common to all six strains, three were absent in one strain. Further classification of the predicted HKs and RRs revealed interesting aspects of their putative functions. Some TCS clusters are involved with the response under the stress of the bile salts, acid, or oxidative, which contribute to survive the difficult journey through the human gastrointestinal tract. Computational predictions of 15 TCSs were verified by PCR experiments. This genomic level study of TCSs should provide valuable insights into the conservation and divergence of TCS proteins in the L. casei strains.

  6. Identification of a two-component signal transduction system that regulates maltose genes in Clostridium perfringens.

    Science.gov (United States)

    Hiscox, Thomas J; Ohtani, Kaori; Shimizu, Tohru; Cheung, Jackie K; Rood, Julian I

    2014-12-01

    Clostridium perfringens is a Gram-positive rod that is widely distributed in nature and is the etiological agent of several human and animal diseases. The complete genome sequence of C. perfringens strain 13 has been determined and multiple two-component signal transduction systems identified. One of these systems, designated here as the MalNO system, was analyzed in this study. Microarray analysis was used to carry out functional analysis of a malO mutant. The results, which were confirmed by quantitative reverse-transcriptase PCR, indicated that genes putatively involved in the uptake and metabolism of maltose were up-regulated in the malO mutant. These effects were reversed by complementation with the wild-type malO gene. Growth of these isogenic strains in medium with and without maltose showed that the malO mutant recovered more quickly from maltose deprivation when compared to the wild-type and complemented strains, leading to the conclusion that the MalNO system regulates maltose utilization in C. perfringens. It is postulated that this regulatory network may allow this soil bacterium and opportunistic pathogen to respond to environmental conditions where there are higher concentrations of maltose or maltodextrins, such as in the presence of decaying plant material in rich soil. Copyright © 2014 Elsevier Ltd. All rights reserved.

  7. Adaptation to environmental stimuli within the host: two-component signal transduction systems of Mycobacterium tuberculosis.

    Science.gov (United States)

    Bretl, Daniel J; Demetriadou, Chrystalla; Zahrt, Thomas C

    2011-12-01

    Pathogenic microorganisms encounter a variety of environmental stresses following infection of their respective hosts. Mycobacterium tuberculosis, the etiological agent of tuberculosis, is an unusual bacterial pathogen in that it is able to establish lifelong infections in individuals within granulomatous lesions that are formed following a productive immune response. Adaptation to this highly dynamic environment is thought to be mediated primarily through transcriptional reprogramming initiated in response to recognition of stimuli, including low-oxygen tension, nutrient depletion, reactive oxygen and nitrogen species, altered pH, toxic lipid moieties, cell wall/cell membrane-perturbing agents, and other environmental cues. To survive continued exposure to these potentially adverse factors, M. tuberculosis encodes a variety of regulatory factors, including 11 complete two-component signal transduction systems (TCSSs) and several orphaned response regulators (RRs) and sensor kinases (SKs). This report reviews our current knowledge of the TCSSs present in M. tuberculosis. In particular, we discuss the biochemical and functional characteristics of individual RRs and SKs, the environmental stimuli regulating their activation, the regulons controlled by the various TCSSs, and the known or postulated role(s) of individual TCSSs in the context of M. tuberculosis physiology and/or pathogenesis.

  8. Osmotic Second Virial Coefficients of Aqueous Solutions from Two-Component Equations of State.

    Science.gov (United States)

    Cerdeiriña, Claudio A; Widom, B

    2016-12-29

    Osmotic second virial coefficients in dilute aqueous solutions of small nonpolar solutes are calculated from three different two-component equations of state. The solutes are five noble gases, four diatomics, and six hydrocarbons in the range C1-C4. The equations of state are modified versions of the van der Waals, Redlich-Kwong, and Peng-Robinson equations, with an added hydrogen-bonding term for the solvent water. The parameters in the resulting equations of state are assigned so as to reproduce the experimental values and temperature dependence of the density, vapor pressure, and compressibility of the solvent, the gas-phase second virial coefficient of the pure solute, the solubility and partial molecular volume of the solute, and earlier estimates of the solutes' molecular radii. For all 15 solutes, the calculations are done for 298.15 K, whereas for CH4, C2H6, and C3H8 in particular, they are also done as functions of temperature over the full range 278.15-348.15 K. The calculated osmotic virial coefficients are compared with earlier calculations of these coefficients for these solutes and also with the results derived from earlier computer simulations of model aqueous solutions of methane. They are also compared with the experimental gas-phase second virial coefficients of the pure gaseous solutes to determine the effect the mediation of the solvent has on the resulting solute-solute interactions in the solution.

  9. The Formation of Bulges, Discs and Two Component Galaxies in the CANDELS Survey at z < 3

    CERN Document Server

    Margalef-Bentabol, Berta; Mortlock, Alice; Hartley, Will; Duncan, Kenneth; Ferguson, Harry C; Koekemoer, Anton M; Dekel, Avishai; Primack, Joel R

    2016-01-01

    We examine a sample of 1495 galaxies in the CANDELS fields to determine the evolution of two component galaxies, including bulges and discs, within massive galaxies at the epoch 1 < z < 3 when the Hubble sequence forms. We fit all of our galaxies' light profiles with a single S\\'ersic fit, as well as with a combination of exponential and S\\'ersic profiles. The latter is done in order to describe a galaxy with an inner and an outer component, or bulge and disc component. We develop and use three classification methods (visual, F-test and the RFF) to separate our sample into 1-component galaxies (disc/spheroids-like galaxies) and 2-component galaxies (galaxies formed by an 'inner part' or bulge and an 'outer part' or disc). We then compare the results from using these three different ways to classify our galaxies. We find that the fraction of galaxies selected as 2-component galaxies increases on average 50 per cent from the lowest mass bin to the most massive galaxies, and decreases with redshift by a fa...

  10. Packing characteristics of two-component bilayers composed of ester- and ether-linked phospholipids.

    Science.gov (United States)

    Batenjany, M M; O'Leary, T J; Levin, I W; Mason, J T

    1997-01-01

    The miscibility properties of ether- and ester-linked phospholipids in two-component, fully hydrated bilayers have been studied by differential scanning calorimetry (DSC) and Raman spectroscopy. Mixtures of 1,2-di-O-hexadecyl-rac-glycero-3-phosphocholine (DHPC) with 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DHPE) and of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) with 1,2-di-O-hexadecyl-sn-glycero-3-phosphoethanolamine (DHPE) have been investigated. The phase diagram for the DPPC/DHPE mixtures indicates that these two phospholipids are miscible in all proportions in the nonrippled bilayer gel phase. In contrast, the DHPC/DPPE mixtures display two regions of gel phase immiscibility between 10 and 30 mol% DPPE. Raman spectroscopic measurements of DHPC/DPPE mixtures in the C-H stretching mode region suggest that this immiscibility arises from the formation of DHPC-rich interdigitated gel phase domains with strong lateral chain packing interactions at temperatures below 27 degrees C. However, in the absence of interdigitation, our findings, and those of others, lead to the conclusion that the miscibility properties of mixtures of ether- and ester-linked phospholipids are determined by the nature of the phospholipid headgroups and are independent of the character of the hydrocarbon chain linkages. Thus it seems unlikely that the ether linkage has any significant effect on the miscibility properties of phospholipids in biological membranes. PMID:9083673

  11. Vapour-mediated sensing and motility in two-component droplets

    Science.gov (United States)

    Cira, N. J.; Benusiglio, A.; Prakash, M.

    2015-03-01

    Controlling the wetting behaviour of liquids on surfaces is important for a variety of industrial applications such as water-repellent coatings and lubrication. Liquid behaviour on a surface can range from complete spreading, as in the `tears of wine' effect, to minimal wetting as observed on a superhydrophobic lotus leaf. Controlling droplet movement is important in microfluidic liquid handling, on self-cleaning surfaces and in heat transfer. Droplet motion can be achieved by gradients of surface energy. However, existing techniques require either a large gradient or a carefully prepared surface to overcome the effects of contact line pinning, which usually limit droplet motion. Here we show that two-component droplets of well-chosen miscible liquids such as propylene glycol and water deposited on clean glass are not subject to pinning and cause the motion of neighbouring droplets over a distance. Unlike the canonical predictions for these liquids on a high-energy surface, these droplets do not spread completely but exhibit an apparent contact angle. We demonstrate experimentally and analytically that these droplets are stabilized by evaporation-induced surface tension gradients and that they move in response to the vapour emitted by neighbouring droplets. Our fundamental understanding of this robust system enabled us to construct a wide variety of autonomous fluidic machines out of everyday materials.

  12. Impact of backmixing of the aqueous phase on two-component rare earth separation process

    Institute of Scientific and Technical Information of China (English)

    WU Sheng; CHENG Fuxiang; LIAO Chunsheng; YAN Chunhua

    2013-01-01

    Solvent extraction based on mixer-settler is the major industrial method of rare earth (RE) separation.In the mixer-settler extraction process,due to the insufficient settling time in normal circumstances,backmixing of the aqueous phase could have significant impact on the process of RE extraction separation.Therefore on the basis of the extraction equilibrium and mass balance of the mixer-settler extraction process,here we developed a mathematic expression of the aqueous phase backmixing in a two-component separation process,and obtained a quantitative analysis of the backmixing effect on the purification process by the approximations according to certain hypotheses.Two extraction systems of La/Ce and Pr/Nd separation were chosen as the examples to analyze the backmixing effect,and the results showed that the aqueous backmixing had greater influence in the scrubbing segment than in the extraction segment,especially in the system with a high separation factor such as La/Ce separation.Therefore it was suggested that the aqueous backmixing effect should be well attended in the design and application of RE extraction separation.

  13. A hybrid two-component system protein from Azospirillum brasilense Sp7 was involved in chemotaxis.

    Science.gov (United States)

    Cui, Yanhua; Tu, Ran; Wu, Lixian; Hong, Yuanyuan; Chen, Sanfeng

    2011-09-20

    We here report the sequence and functional analysis of org35 of Azospirillum brasilense Sp7, which was originally identified to be able to interact with NifA in yeast-two-hybrid system. The org35 encodes a hybrid two-component system protein, including N-terminal PAS domains, a histidine kinase (HPK) domain and a response regulator (RR) domain in C-terminal. To determine the function of the Org35, a deletion-insertion mutant in PAS domain [named Sp7353] and a complemental strain Sp7353C were constructed. The mutant had reduced chemotaxis ability compared to that of wild-type, and the complemental strain was similar to the wild-type strain. These data suggested that the A. brasilense org35 played a key role in chemotaxis. Variants containing different domains of the org35 were expressed, and the functions of these domains were studied in vitro. Phosphorylation assays in vitro demonstrated that the HPK domain of Org35 possessed the autokinase activity and that the phosphorylated HPK was able to transfer phosphate groups to the RR domain. The result indicated Org35 was a phosphorylation-communicating protein.

  14. Adhesion-induced phase behavior of two-component membranes and vesicles.

    Science.gov (United States)

    Rouhiparkouhi, Tahereh; Weikl, Thomas R; Discher, Dennis E; Lipowsky, Reinhard

    2013-01-22

    The interplay of adhesion and phase separation is studied theoretically for two-component membranes that can phase separate into two fluid phases such as liquid-ordered and liquid-disordered phases. Many adhesion geometries provide two different environments for these membranes and then partition the membranes into two segments that differ in their composition. Examples are provided by adhering vesicles, by hole- or pore-spanning membranes, and by membranes supported by chemically patterned surfaces. Generalizing a lattice model for binary mixtures to these adhesion geometries, we show that the phase behavior of the adhering membranes depends, apart from composition and temperature, on two additional parameters, the area fraction of one membrane segment and the affinity contrast between the two segments. For the generic case of non-vanishing affinity contrast, the adhering membranes undergo two distinct phase transitions and the phase diagrams in the composition/temperature plane have a generic topology that consists of two two-phase coexistence regions separated by an intermediate one-phase region. As a consequence, phase separation and domain formation is predicted to occur separately in each of the two membrane segments but not in both segments simultaneously. Furthermore, adhesion is also predicted to suppress the phase separation process for certain regions of the phase diagrams. These generic features of the adhesion-induced phase behavior are accessible to experiment.

  15. Regularized maximum correntropy machine

    KAUST Repository

    Wang, Jim Jing-Yan

    2015-02-12

    In this paper we investigate the usage of regularized correntropy framework for learning of classifiers from noisy labels. The class label predictors learned by minimizing transitional loss functions are sensitive to the noisy and outlying labels of training samples, because the transitional loss functions are equally applied to all the samples. To solve this problem, we propose to learn the class label predictors by maximizing the correntropy between the predicted labels and the true labels of the training samples, under the regularized Maximum Correntropy Criteria (MCC) framework. Moreover, we regularize the predictor parameter to control the complexity of the predictor. The learning problem is formulated by an objective function considering the parameter regularization and MCC simultaneously. By optimizing the objective function alternately, we develop a novel predictor learning algorithm. The experiments on two challenging pattern classification tasks show that it significantly outperforms the machines with transitional loss functions.

  16. Regular Expression Containment

    DEFF Research Database (Denmark)

    Henglein, Fritz; Nielsen, Lasse

    2011-01-01

    We present a new sound and complete axiomatization of regular expression containment. It consists of the conventional axiomatiza- tion of concatenation, alternation, empty set and (the singleton set containing) the empty string as an idempotent semiring, the fixed- point rule E* = 1 + E × E......* for Kleene-star, and a general coin- duction rule as the only additional rule. Our axiomatization gives rise to a natural computational inter- pretation of regular expressions as simple types that represent parse trees, and of containment proofs as coercions. This gives the axiom- atization a Curry......-Howard-style constructive interpretation: Con- tainment proofs do not only certify a language-theoretic contain- ment, but, under our computational interpretation, constructively transform a membership proof of a string in one regular expres- sion into a membership proof of the same string in another regular expression. We...

  17. Regularities of Multifractal Measures

    Indian Academy of Sciences (India)

    Hun Ki Baek

    2008-05-01

    First, we prove the decomposition theorem for the regularities of multifractal Hausdorff measure and packing measure in $\\mathbb{R}^d$. This decomposition theorem enables us to split a set into regular and irregular parts, so that we can analyze each separately, and recombine them without affecting density properties. Next, we give some properties related to multifractal Hausdorff and packing densities. Finally, we extend the density theorem in [6] to any measurable set.

  18. On Regular Linear Relations

    Institute of Scientific and Technical Information of China (English)

    T. (A)LVAREZ

    2012-01-01

    For a closed linear relation in a Banach space the concept of regularity is introduced and studied.It is shown that many of the results of Mbekhta and other authors for operators remain valid in the context of multivalued linear operators.We also extend the punctured neighbourhood theorem for operators to linear relations and as an application we obtain a characterization of semiFredholm linear relations which are regular.

  19. Effects of external magnetic trap on two dark solitons of a two-component Bose-Einstein condensate

    Institute of Scientific and Technical Information of China (English)

    Hong Li; D. N. Wang

    2008-01-01

    Two dark solitons are considered in a two-component Bose-Einstein condensate with an external magnetic trap, and effects of the trap potential on their dynamics are investigated by the numerical simulation. The results show that the dark solitons attract, collide and repel periodically in two components as time changes, the time period depends strictly on the initial condition and the potential, and there are obvious self-trapping effects on the two dark solitons.

  20. Distribution, structure and diversity of “bacterial” genes encoding two-component proteins in the Euryarchaeota

    Directory of Open Access Journals (Sweden)

    Mark K. Ashby

    2006-01-01

    Full Text Available The publicly available annotated archaeal genome sequences (23 complete and three partial annotations, October 2005 were searched for the presence of potential two-component open reading frames (ORFs using gene category lists and BLASTP. A total of 489 potential two-component genes were identified from the gene category lists and BLASTP. Two-component genes were found in 14 of the 21 Euryarchaeal sequences (October 2005 and in neither the Crenarchaeota nor the Nanoarchaeota. A total of 20 predicted protein domains were identified in the putative two-component ORFs that, in addition to the histidine kinase and receiver domains, also includes sensor and signalling domains. The detailed structure of these putative proteins is shown, as is the distribution of each class of two-component genes in each species. Potential members of orthologous groups have been identified, as have any potential operons containing two or more two-component genes. The number of two-component genes in those Euryarchaeal species which have them seems to be linked more to lifestyle and habitat than to genome complexity, with most examples being found in Methanospirillum hungatei, Haloarcula marismortui, Methanococcoides burtonii and the mesophilic Methanosarcinales group. The large numbers of two-component genes in these species may reflect a greater requirement for internal regulation. Phylogenetic analysis of orthologous groups of five different protein classes, three probably involved in regulating taxis, suggests that most of these ORFs have been inherited vertically from an ancestral Euryarchaeal species and point to a limited number of key horizontal gene transfer events.

  1. A two-component generalization of the reduced Ostrovsky equation and its integrable semi-discrete analogue

    Science.gov (United States)

    Feng, Bao-Feng; Maruno, Ken-ichi; Ohta, Yasuhiro

    2017-02-01

    In the present paper, we propose a two-component generalization of the reduced Ostrovsky (Vakhnenko) equation, whose differential form can be viewed as the short-wave limit of a two-component Degasperis-Procesi (DP) equation. They are integrable due to the existence of Lax pairs. Moreover, we have shown that the two-component reduced Ostrovsky equation can be reduced from an extended BKP hierarchy with negative flow through a pseudo 3-reduction and a hodograph (reciprocal) transform. As a by-product, its bilinear form and N-soliton solution in terms of pfaffians are presented. One- and two-soliton solutions are provided and analyzed. In the second part of the paper, we start with a modified BKP hierarchy, which is a Bäcklund transformation of the above extended BKP hierarchy, an integrable semi-discrete analogue of the two-component reduced Ostrovsky equation is constructed by defining an appropriate discrete hodograph transform and dependent variable transformations. In particular, the backward difference form of above semi-discrete two-component reduced Ostrovsky equation gives rise to the integrable semi-discretization of the short wave limit of a two-component DP equation. Their N-soliton solutions in terms of pffafians are also provided.

  2. Quantitative Kinetic Analyses of Shutting Off a Two-Component System

    Directory of Open Access Journals (Sweden)

    Rong Gao

    2017-05-01

    Full Text Available Cells rely on accurate control of signaling systems to adapt to environmental perturbations. System deactivation upon stimulus removal is as important as activation of signaling pathways. The two-component system (TCS is one of the major bacterial signaling schemes. In many TCSs, phosphatase activity of the histidine kinase (HK is believed to play an essential role in shutting off the pathway and resetting the system to the prestimulus state. Two basic challenges are to understand the dynamic behavior of system deactivation and to quantitatively evaluate the role of phosphatase activity under natural cellular conditions. Here we report a kinetic analysis of the response to shutting off the archetype Escherichia coli PhoR-PhoB TCS pathway using both transcription reporter assays and in vivo phosphorylation analyses. Upon removal of the stimulus, the pathway is shut off by rapid dephosphorylation of the PhoB response regulator (RR while PhoB-regulated gene products gradually reset to prestimulus levels through growth dilution. We developed an approach combining experimentation and modeling to assess in vivo kinetic parameters of the phosphatase activity with kinetic data from multiple phosphatase-diminished mutants. This enabled an estimation of the PhoR phosphatase activity in vivo, which is much stronger than the phosphatase activity of PhoR cytoplasmic domains analyzed in vitro. We quantitatively modeled how strong the phosphatase activity needs to be to suppress nonspecific phosphorylation in TCSs and discovered that strong phosphatase activity of PhoR is required for cross-phosphorylation suppression.

  3. Transcriptome analysis of the Brucella abortus BvrR/BvrS two-component regulatory system.

    Directory of Open Access Journals (Sweden)

    Cristina Viadas

    Full Text Available BACKGROUND: The two-component BvrR/BvrS system is essential for Brucella abortus virulence. It was shown previously that its dysfunction alters the expression of some major outer membrane proteins and the pattern of lipid A acylation. To determine the genes regulated by BvrR/BvrS, we performed a whole-genome microarray analysis using B. abortus RNA obtained from wild type and bvrR mutant cells grown in the same conditions. METHODOLOGY/PRINCIPAL FINDINGS: A total of 127 differentially expressed genes were found: 83 were over expressed and 44 were less expressed in the bvrR mutant. Two operons, the phosphotransferase system and the maltose transport system, were down-regulated. Several genes involved in cell envelope or outer membrane biogenesis were differentially expressed: genes for outer membrane proteins (omp25a, omp25d, lipoproteins, LPS and fatty acid biosynthesis, stress response proteins, chaperones, flagellar genes, and twelve genes encoding ABC transport systems. Ten genes related with carbon metabolism (pckA and fumB among others were up-regulated in the bvrR mutant, and denitrification genes (nirK, norC and nosZ were also regulated. Notably, seven transcriptional regulators were affected, including VjbR, ExoR and OmpR that were less expressed in the bvrR mutant. Finally, the expression of eleven genes which have been previously related with Brucella virulence was also altered. CONCLUSIONS/SIGNIFICANCE: All these data corroborate the impact of BvrR/BvrS on cell envelope modulation, confirm that this system controls the carbon and nitrogen metabolism, and suggest a cross-talk among some regulators to adjust the Brucella physiology to the shift expected to occur during the transit from the extracellular to the intracellular niche.

  4. Structural studies of the activation of the two component receiver domain NTRC by multidimensional heteronuclear NMR

    Energy Technology Data Exchange (ETDEWEB)

    Nohaile, M J [Univ. of California, Berkeley, CA (United States). Dept. of Chemistry

    1996-05-01

    Multidimensional heteronuclear NMR spectroscopy was used to investigate the N-terminal domain of the transcriptional enhancer NTRC (NiTrogen Regulatory protein C). This domain belongs to the family of receiver domains of two-component regulatory systems involved in signal transduction. Phosphorylation of NTRC at D54 leads to an activated form of the molecule which stimulates transcription of genes involved in nitrogen regulation. Three and four dimensional NMR techniques were used to determine an intermediate resolution structure of the unphosphorylated, inactive form of the N-terminal domain of NTRC. The structure is comprised of five {alpha}-helices and a five-stranded {beta}-sheet in a ({beta}/{alpha}){sub 5} topology. Analysis of the backbone dynamics of NTRC indicate that helix 4 and strand 5 are significantly more flexible than the rest of the secondary structure of the protein and that the loops making up the active site are flexible. The short lifetime of phospho-NTRC hampers the study of this form. However, conditions for determining the resonance assignments and, possibly, the three dimensional structure of phosphorylated NTRC have been obtained. Tentative assignments of the phosphorylated form indicate that the majority of the changes that NTRC experiences upon phosphorylation occur in helix 3, strand 4, helix 4, strand 5, and the loop between strand 5 and helix 5 (the 3445 face of NTRC) as well as near the site of phosphorylation. In order to examine a stable, activated form of the protein, constitutively active mutants of NTRC were investigated.

  5. Low temperatures shear viscosity of a two-component dipolar Fermi gas with unequal population

    Science.gov (United States)

    Darsheshdar, E.; Yavari, H.; Zangeneh, Z.

    2016-07-01

    By using the Green's functions method and linear response theory we calculate the shear viscosity of a two-component dipolar Fermi gas with population imbalance (spin polarized) in the low temperatures limit. In the strong-coupling Bose-Einstein condensation (BEC) region where a Feshbach resonance gives rise to tightly bound dimer molecules, a spin-polarized Fermi superfluid reduces to a simple Bose-Fermi mixture of Bose-condensed dimers and the leftover unpaired fermions (atoms). The interactions between dimer-atom, dimer-dimer, and atom-atom take into account to the viscous relaxation time (τη) . By evaluating the self-energies in the ladder approximation we determine the relaxation times due to dimer-atom (τDA) , dimer-dimer (τcDD ,τdDD) , and atom-atom (τAA) interactions. We will show that relaxation rates due to these interactions τDA-1 ,τcDD-1, τdDD-1, and τAA-1 have T2, T4, e - E /kB T (E is the spectrum of the dimer atoms), and T 3 / 2 behavior respectively in the low temperature limit (T → 0) and consequently, the atom-atom interaction plays the dominant role in the shear viscosity in this rang of temperatures. For small polarization (τDA ,τAA ≫τcDD ,τdDD), the low temperatures shear viscosity is determined by contact interaction between dimers and the shear viscosity varies as T-5 which has the same behavior as the viscosity of other superfluid systems such as superfluid neutron stars, and liquid helium.

  6. Gene Regulation by the LiaSR Two-Component System in Streptococcus mutans.

    Directory of Open Access Journals (Sweden)

    Manoharan Shankar

    Full Text Available The LiaSR two-component signal transduction system regulates cellular responses to several environmental stresses, including those that induce cell envelope damages. Downstream regulons of the LiaSR system have been implicated in tolerance to acid, antibiotics and detergents. In the dental pathogen Streptococcus mutans, the LiaSR system is necessary for tolerance against acid, antibiotics, and cell wall damaging stresses during growth in the oral cavity. To understand the molecular mechanisms by which LiaSR regulates gene expression, we created a mutant LiaR in which the conserved aspartic acid residue (the phosphorylation site, was changed to alanine residue (D58A. As expected, the LiaR-D58A variant was unable to acquire the phosphate group and bind to target promoters. We also noted that the predicted LiaR-binding motif upstream of the lia operon does not appear to be well conserved. Consistent with this observation, we found that LiaR was unable to bind to the promoter region of lia; however, we showed that LiaR was able to bind to the promoters of SMU.753, SMU.2084 and SMU.1727. Based on sequence analysis and DNA binding studies we proposed a new 25-bp conserved motif essential for LiaR binding. Introducing alterations at fully conserved positions in the 25-bp motif affected LiaR binding, and the binding was dependent on the combination of positions that were altered. By scanning the S. mutans genome for the occurrence of the newly defined LiaR binding motif, we identified the promoter of hrcA (encoding a key regulator of the heat shock response that contains a LiaR binding motif, and we showed that hrcA is negatively regulated by the LiaSR system. Taken together our results suggest a putative role of the LiaSR system in heat shock responses of S. mutans.

  7. Regulation of acid resistance by connectors of two-component signal transduction systems in Escherichia coli.

    Science.gov (United States)

    Eguchi, Yoko; Ishii, Eiji; Hata, Kensuke; Utsumi, Ryutaro

    2011-03-01

    Two-component signal transduction systems (TCSs), utilized extensively by bacteria and archaea, are involved in the rapid adaptation of the organisms to fluctuating environments. A typical TCS transduces the signal by a phosphorelay between the sensor histidine kinase and its cognate response regulator. Recently, small-sized proteins that link TCSs have been reported and are called "connectors." Their physiological roles, however, have remained elusive. SafA (sensor associating factor A) (formerly B1500), a small (65-amino-acid [65-aa]) membrane protein, is among such connectors and links Escherichia coli TCSs EvgS/EvgA and PhoQ/PhoP. Since the activation of the EvgS/EvgA system induces acid resistance, we examined whether the SafA-activated PhoQ/PhoP system is also involved in the acid resistance induced by EvgS/EvgA. Using a constitutively active evgS1 mutant for the activation of EvgS/EvgA, we found that SafA, PhoQ, and PhoP all contributed to the acid resistance phenotype. Moreover, EvgS/EvgA activation resulted in the accumulation of cellular RpoS in the exponential-phase cells in a SafA-, PhoQ-, and PhoP-dependent manner. This RpoS accumulation was caused by another connector, IraM, expression of which was induced by the activation of the PhoQ/PhoP system, thus preventing RpoS degradation by trapping response regulator RssB. Acid resistance assays demonstrated that IraM also participated in the EvgS/EvgA-induced acid resistance. Therefore, we propose a model of a signal transduction cascade proceeding from EvgS/EvgA to PhoQ/PhoP and then to RssB (connected by SafA and IraM) and discuss its contribution to the acid resistance phenotype.

  8. Signal integration by the two-component signal transduction response regulator CpxR.

    Science.gov (United States)

    Wolfe, Alan J; Parikh, Niyati; Lima, Bruno P; Zemaitaitis, Bozena

    2008-04-01

    The CpxAR two-component signal transduction system in Escherichia coli and other pathogens senses diverse envelope stresses and promotes the transcription of a variety of genes that remedy these stresses. An important member of the CpxAR regulon is cpxP. The CpxA-dependent transcription of cpxP has been linked to stresses such as misfolded proteins and alkaline pH. It also has been proposed that acetyl phosphate, the intermediate of the phosphotransacetylase (Pta)-acetate kinase (AckA) pathway, can activate the transcription of cpxP in a CpxA-independent manner by donating its phosphoryl group to CpxR. We tested this hypothesis by measuring the transcription of cpxP using mutants with mutations in the CpxAR pathway, mutants with mutations in the Pta-AckA pathway, and mutants with a combination of both types of mutations. From this epistasis analysis, we learned that CpxR integrates diverse stimuli. The stimuli that originate in the envelope depend on CpxA, while those associated with growth and central metabolism depend on the Pta-AckA pathway. While CpxR could receive a phosphoryl group from acetyl phosphate, this global signal was not the primary trigger for CpxR activation associated with the Pta-AckA pathway. On the strength of these results, we contend that the interactions between central metabolism and signal transduction can be quite complex and that successful investigations of such interactions must include a complete epistatic analysis.

  9. Conformational transition of response regulator RR468 in a two-component system signal transduction process.

    Science.gov (United States)

    Banerjee, Rahul; Yan, Honggao; Cukier, Robert I

    2014-05-08

    Signal transduction can be accomplished via a two-component system (TCS) consisting of a histidine kinase (HK) and a response regulator (RR). In this work, we simulate the response regulator RR468 from Thermotoga maritima, in which phosphorylation and dephosphorylation of a conserved aspartate residue acts as a switch via a large conformational change concentrated in three proximal loops. A detailed view of the conformational transition is obscured by the lack of stability of the intermediate states, which are difficult to detect using common structural biology techniques. Molecular dynamics (MD) trajectories of the inactive and active conformations were run, and show that the inactive (or active) trajectories do not exhibit sampling of the active (or inactive) conformations on this time scale. Targeted MD (TMD) was used to generate trajectories that span the inactive and active conformations and provide a view of how a localized event like phosphorylation can lead to conformational changes elsewhere in the protein, especially in the three proximal loops. The TMD trajectories are clustered to identify stages along the transition path. Residue interaction networks are identified that point to key residues having to rearrange in the process of transition. These are identified using both hydrogen bond analysis and residue interaction strength measurements. Potentials of mean force are generated for key residue rearrangements to ascertain their free energy barriers. We introduce methods that attempt to extrapolate from one conformation to the other and find that the most fluctuating proximal loop can transit part way from one to the other, suggesting that this conformational information is embedded in the sequence.

  10. Imidazole as a Small Molecule Analogue in Two-Component Signal Transduction.

    Science.gov (United States)

    Page, Stephani C; Silversmith, Ruth E; Collins, Edward J; Bourret, Robert B

    2015-12-15

    In two-component signal transduction systems (TCSs), responses to stimuli are mediated through phosphotransfer between protein components. Canonical TCSs use His → Asp phosphotransfer in which phosphoryl groups are transferred from a conserved His on a sensory histidine kinase (HK) to a conserved Asp on a response regulator (RR). RRs contain the catalytic core of His → Asp phosphotransfer, evidenced by the ability of RRs to autophosphorylate with small molecule analogues of phospho-His proteins. Phosphorelays are a more complex variation of TCSs that additionally utilize Asp → His phosphotransfer through the use of an additional component, the histidine-containing phosphotransfer domain (Hpt), which reacts with RRs both as phosphodonors and phosphoacceptors. Here we show that imidazole has features of a rudimentary Hpt. Imidazole acted as a nucleophile and attacked phosphorylated RRs (RR-P) to produce monophosphoimidazole (MPI) and unphosphorylated RR. Phosphotransfer from RR-P to imidazole required the intact RR active site, indicating that the RR provided the core catalytic machinery for Asp → His phosphotransfer. Imidazole functioned in an artificial phosphorelay to transfer phosphoryl groups between unrelated RRs. The X-ray crystal structure of an activated RR·imidazole complex showed imidazole oriented in the RR active site similarly to the His of an Hpt. Imidazole interacted with RR nonconserved active site residues, which influenced the relative reactivity of RR-P with imidazole versus water. Rate constants for reaction of imidazole or MPI with chimeric RRs suggested that the RR active site contributes to the kinetic preferences exhibited by the YPD1 Hpt.

  11. Temporal Variability from the Two-Component Advective Flow Solution and Its Observational Evidence

    Science.gov (United States)

    Dutta, Broja G.; Chakrabarti, Sandip K.

    2016-09-01

    In the propagating oscillatory shock model, the oscillation of the post-shock region, i.e., the Compton cloud, causes the observed low-frequency quasi-periodic oscillations (QPOs). The evolution of QPO frequency is explained by the systematic variation of the Compton cloud size, i.e., the steady radial movement of the shock front, which is triggered by the cooling of the post-shock region. Thus, analysis of the energy-dependent temporal properties in different variability timescales can diagnose the dynamics and geometry of accretion flows around black holes. We study these properties for the high-inclination black hole source XTE J1550-564 during its 1998 outburst and the low-inclination black hole source GX 339-4 during its 2006-07 outburst using RXTE/PCA data, and we find that they can satisfactorily explain the time lags associated with the QPOs from these systems. We find a smooth decrease of the time lag as a function of time in the rising phase of both sources. In the declining phase, the time lag increases with time. We find a systematic evolution of QPO frequency and hard lags in these outbursts. In XTE J1550-564, the lag changes from hard to soft (i.e., from a positive to a negative value) at a crossing frequency (ν c) of ˜3.4 Hz. We present possible mechanisms to explain the lag behavior of high and low-inclination sources within the framework of a single two-component advective flow model.

  12. Large-scale Models Reveal the Two-component Mechanics of Striated Muscle

    Directory of Open Access Journals (Sweden)

    Robert Jarosch

    2008-12-01

    Full Text Available This paper provides a comprehensive explanation of striated muscle mechanics and contraction on the basis of filament rotations. Helical proteins, particularly the coiled-coils of tropomyosin, myosin and α-actinin, shorten their H-bonds cooperatively and produce torque and filament rotations when the Coulombic net-charge repulsion of their highly charged side-chains is diminished by interaction with ions. The classical “two-component model” of active muscle differentiated a “contractile component” which stretches the “series elastic component” during force production. The contractile components are the helically shaped thin filaments of muscle that shorten the sarcomeres by clockwise drilling into the myosin cross-bridges with torque decrease (= force-deficit. Muscle stretch means drawing out the thin filament helices off the cross-bridges under passive counterclockwise rotation with torque increase (= stretch activation. Since each thin filament is anchored by four elastic α-actinin Z-filaments (provided with forceregulating sites for Ca2+ binding, the thin filament rotations change the torsional twist of the four Z-filaments as the “series elastic components”. Large scale models simulate the changes of structure and force in the Z-band by the different Z-filament twisting stages A, B, C, D, E, F and G. Stage D corresponds to the isometric state. The basic phenomena of muscle physiology, i. e. latency relaxation, Fenn-effect, the force-velocity relation, the length-tension relation, unexplained energy, shortening heat, the Huxley-Simmons phases, etc. are explained and interpreted with the help of the model experiments.

  13. Structural studies of the activation of the two component receiver domain NTRC by multidimensional heteronuclear NMR

    Energy Technology Data Exchange (ETDEWEB)

    Nohaile, Michael James [Univ. of California, Berkeley, CA (United States). Dept. of Chemistry

    1996-05-01

    Multidimensional heteronuclear NMR spectroscopy was used to investigate the N-terminal domain of the transcriptional enhancer NTRC (NiTrogen Regulatory protein C). This domain belongs to the family of receiver domains of two-component regulatory systems involved in signal transduction. Phosphorylation of NTRC at D54 leads to an activated form of the molecule which stimulates transcription of genes involved in nitrogen regulation. Three and four dimensional NMR techniques were used to determine an intermediate resolution structure of the unphosphorylated, inactive form of the N-terminal domain of NTRC. The structure is comprised of five α-helices and a five-stranded β-sheet in a (β/α)5 topology. Analysis of the backbone dynamics of NTRC indicate that helix 4 and strand 5 are significantly more flexible than the rest of the secondary structure of the protein and that the loops making up the active site are flexible. The short lifetime of phospho-NTRC hampers the study of this form. However, conditions for determining the resonance assignments and, possibly, the three dimensional structure of phosphorylated NTRC have been obtained. Tentative assignments of the phosphorylated form indicate that the majority of the changes that NTRC experiences upon phosphorylation occur in helix 3, strand 4, helix 4, strand 5, and the loop between strand 5 and helix 5 (the 3445 face of NTRC) as well as near the site of phosphorylation. In order to examine a stable, activated form of the protein, constitutively active mutants of NTRC were investigated.

  14. A second order anti-diffusive Lagrange-remap scheme for two-component flows

    Directory of Open Access Journals (Sweden)

    Lagoutière Frédéric

    2011-11-01

    Full Text Available We build a non-dissipative second order algorithm for the approximate resolution of the one-dimensional Euler system of compressible gas dynamics with two components. The considered model was proposed in [1]. The algorithm is based on [8] which deals with a non-dissipative first order resolution in Lagrange-remap formalism. In the present paper we describe, in the same framework, an algorithm that is second order accurate in time and space, and that preserves sharp interfaces. Numerical results reported at the end of the paper are very encouraging, showing the interest of the second order accuracy for genuinely non-linear waves. Nous construisons un algorithme d’ordre deux et non dissipatif pour la résolution approchée des équations d’Euler de la dynamique des gaz compressibles à deux constituants en dimension un. Le modèle que nous considérons est celui à cinq équations proposé et analysé dans [1]. L’algorithme est basé sur [8] qui proposait une résolution approchée à l’ordre un et non dissipative au moyen d’un splitting de type Lagrange-projection. Dans le présent article, nous décrivons, dans le même formalisme, un algorithme d’ordre deux en temps et en espace, qui préserve des interfaces « parfaites » entre les constituants. Les résultats numériques rapportés à la fin de l’article sont très encourageants ; ils montrent clairement les avantages d’un schéma d’ordre deux pour les ondes vraiment non linéaires.

  15. Perturbative treatment of spin-orbit coupling within spin-free exact two-component theory

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, Lan, E-mail: chenglanster@gmail.com [Institute for Theoretical Chemistry, Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712 (United States); Gauss, Jürgen, E-mail: gauss@uni-mainz.de [Institut für Physikalische Chemie, Universität Mainz, D-55099 Mainz (Germany)

    2014-10-28

    This work deals with the perturbative treatment of spin-orbit-coupling (SOC) effects within the spin-free exact two-component theory in its one-electron variant (SFX2C-1e). We investigate two schemes for constructing the SFX2C-1e SOC matrix: the SFX2C-1e+SOC [der] scheme defines the SOC matrix elements based on SFX2C-1e analytic-derivative theory, hereby treating the SOC integrals as the perturbation; the SFX2C-1e+SOC [fd] scheme takes the difference between the X2C-1e and SFX2C-1e Hamiltonian matrices as the SOC perturbation. Furthermore, a mean-field approach in the SFX2C-1e framework is formulated and implemented to efficiently include two-electron SOC effects. Systematic approximations to the two-electron SOC integrals are also proposed and carefully assessed. Based on benchmark calculations of the second-order SOC corrections to the energies and electrical properties for a set of diatomic molecules, we show that the SFX2C-1e+SOC [der] scheme performs very well in the computation of perturbative SOC corrections and that the “2eSL” scheme, which neglects the (SS|SS)-type two-electron SOC integrals, is both efficient and accurate. In contrast, the SFX2C-1e+SOC [fd] scheme turns out to be incompatible with a perturbative treatment of SOC effects. Finally, as a first chemical application, we report high-accuracy calculations of the {sup 201}Hg quadrupole-coupling parameters of the recently characterized ethylmercury hydride (HHgCH{sub 2}CH{sub 3}) molecule based on SFX2C-1e coupled-cluster calculations augmented with second-order SOC corrections obtained at the Hartree-Fock level using the SFX2C-1e+SOC [der]/2eSL scheme.

  16. Characterization of an archaeal two-component system that regulates methanogenesis in Methanosaeta harundinacea.

    Directory of Open Access Journals (Sweden)

    Jie Li

    Full Text Available Two-component signal transduction systems (TCSs are a major mechanism used by bacteria in response to environmental changes. Although many sequenced archaeal genomes encode TCSs, they remain poorly understood. Previously, we reported that a methanogenic archaeon, Methanosaeta harundinacea, encodes FilI, which synthesizes carboxyl-acyl homoserine lactones, to regulate transitions of cellular morphology and carbon metabolic fluxes. Here, we report that filI, the cotranscribed filR2, and the adjacent filR1 constitute an archaeal TCS. FilI possesses a cytoplasmic kinase domain (histidine kinase A and histidine kinase-like ATPase and its cognate response regulator. FilR1 carries a receiver (REC domain coupled with an ArsR-related domain with potential DNA-binding ability, while FilR2 carries only a REC domain. In a phosphorelay assay, FilI was autophosphorylated and specifically transferred the phosphoryl group to FilR1 and FilR2, confirming that the three formed a cognate TCS. Through chromatin immunoprecipitation-quantitative polymerase chain reaction (ChIP-qPCR using an anti-FilR1 antibody, FilR1 was shown to form in vivo associations with its own promoter and the promoter of the filI-filR2 operon, demonstrating a regulatory pattern common among TCSs. ChIP-qPCR also detected FilR1 associations with key genes involved in acetoclastic methanogenesis, acs4 and acs1. Electrophoretic mobility shift assays confirmed the in vitro tight binding of FilR1 to its own promoter and those of filI-filR2, acs4, and mtrABC. This also proves the DNA-binding ability of the ArsR-related domain, which is found primarily in Archaea. The archaeal promoters of acs4, filI, acs1, and mtrABC also initiated FilR1-modulated expression in an Escherichia coli lux reporter system, suggesting that FilR1 can up-regulate both archaeal and bacterial transcription. In conclusion, this work identifies an archaeal FilI/FilRs TCS that regulates the methanogenesis of M. harundinacea.

  17. The two-component giant radio halo in the galaxy cluster Abell 2142

    Science.gov (United States)

    Venturi, T.; Rossetti, M.; Brunetti, G.; Farnsworth, D.; Gastaldello, F.; Giacintucci, S.; Lal, D. V.; Rudnick, L.; Shimwell, T. W.; Eckert, D.; Molendi, S.; Owers, M.

    2017-07-01

    Aims: We report on a spectral study at radio frequencies of the giant radio halo in A 2142 (z = 0.0909), which we performed to explore its nature and origin. The optical and X-ray properties of the cluster suggest that A 2142 is not a major merger and the presence of a giant radio halo is somewhat surprising. Methods: We performed deep radio observations of A 2142 with the Giant Metrewave Radio Telescope (GMRT) at 608 MHz, 322 MHz, and 234 MHz and with the Very Large Array (VLA) in the 1-2 GHz band. We obtained high-quality images at all frequencies in a wide range of resolutions, from the galaxy scale, i.e. 5'', up to 60'' to image the diffuse cluster-scale emission. The radio halo is well detected at all frequencies and extends out to the most distant cold front in A 2142, about 1 Mpc away from the cluster centre. We studied the spectral index in two regions: the central part of the halo, where the X-ray emission peaks and the two brightest dominant galaxies are located; and a second region, known as the ridge (in the direction of the most distant south-eastern cold front), selected to follow the bright part of the halo and X-ray emission. We complemented our deep observations with a preliminary LOw Frequency ARray (LOFAR) image at 118 MHz and with the re-analysis of archival VLA data at 1.4 GHz. Results: The two components of the radio halo show different observational properties. The central brightest part has higher surface brightess and a spectrum whose steepness is similar to those of the known radio halos, i.e. α1.78 GHz118 MHz = 1.33 ± 0.08 . The ridge, which fades into the larger scale emission, is broader in size and has considerably lower surface brightess and a moderately steeper spectrum, i.e. α1.78 GHz118 MHz 1.5. We propose that the brightest part of the radio halo is powered by the central sloshing in A 2142, in a process similar to what has been suggested for mini-halos, or by secondary electrons generated by hadronic collisions in the ICM. On

  18. Evolutionary tuning of protein expression levels of a positively autoregulated two-component system.

    Directory of Open Access Journals (Sweden)

    Rong Gao

    2013-10-01

    Full Text Available Cellular adaptation relies on the development of proper regulatory schemes for accurate control of gene expression levels in response to environmental cues. Over- or under-expression can lead to diminished cell fitness due to increased costs or insufficient benefits. Positive autoregulation is a common regulatory scheme that controls protein expression levels and gives rise to essential features in diverse signaling systems, yet its roles in cell fitness are less understood. It remains largely unknown how much protein expression is 'appropriate' for optimal cell fitness under specific extracellular conditions and how the dynamic environment shapes the regulatory scheme to reach appropriate expression levels. Here, we investigate the correlation of cell fitness and output response with protein expression levels of the E. coli PhoB/PhoR two-component system (TCS. In response to phosphate (Pi-depletion, the PhoB/PhoR system activates genes involved in phosphorus assimilation as well as genes encoding themselves, similarly to many other positively autoregulated TCSs. We developed a bacteria competition assay in continuous cultures and discovered that different Pi conditions have conflicting requirements of protein expression levels for optimal cell fitness. Pi-replete conditions favored cells with low levels of PhoB/PhoR while Pi-deplete conditions selected for cells with high levels of PhoB/PhoR. These two levels matched PhoB/PhoR concentrations achieved via positive autoregulation in wild-type cells under Pi-replete and -deplete conditions, respectively. The fitness optimum correlates with the wild-type expression level, above which the phosphorylation output saturates, thus further increase in expression presumably provides no additional benefits. Laboratory evolution experiments further indicate that cells with non-ideal protein levels can evolve toward the optimal levels with diverse mutational strategies. Our results suggest that the natural

  19. Regularized Structural Equation Modeling.

    Science.gov (United States)

    Jacobucci, Ross; Grimm, Kevin J; McArdle, John J

    A new method is proposed that extends the use of regularization in both lasso and ridge regression to structural equation models. The method is termed regularized structural equation modeling (RegSEM). RegSEM penalizes specific parameters in structural equation models, with the goal of creating easier to understand and simpler models. Although regularization has gained wide adoption in regression, very little has transferred to models with latent variables. By adding penalties to specific parameters in a structural equation model, researchers have a high level of flexibility in reducing model complexity, overcoming poor fitting models, and the creation of models that are more likely to generalize to new samples. The proposed method was evaluated through a simulation study, two illustrative examples involving a measurement model, and one empirical example involving the structural part of the model to demonstrate RegSEM's utility.

  20. Regularity of Bound States

    DEFF Research Database (Denmark)

    Faupin, Jeremy; Møller, Jacob Schach; Skibsted, Erik

    2011-01-01

    We study regularity of bound states pertaining to embedded eigenvalues of a self-adjoint operator H, with respect to an auxiliary operator A that is conjugate to H in the sense of Mourre. We work within the framework of singular Mourre theory which enables us to deal with confined massless Pauli–......–Fierz models, our primary example, and many-body AC-Stark Hamiltonians. In the simpler context of regular Mourre theory, our results boil down to an improvement of results obtained recently in [8, 9]....

  1. Manifold Regularized Reinforcement Learning.

    Science.gov (United States)

    Li, Hongliang; Liu, Derong; Wang, Ding

    2017-01-27

    This paper introduces a novel manifold regularized reinforcement learning scheme for continuous Markov decision processes. Smooth feature representations for value function approximation can be automatically learned using the unsupervised manifold regularization method. The learned features are data-driven, and can be adapted to the geometry of the state space. Furthermore, the scheme provides a direct basis representation extension for novel samples during policy learning and control. The performance of the proposed scheme is evaluated on two benchmark control tasks, i.e., the inverted pendulum and the energy storage problem. Simulation results illustrate the concepts of the proposed scheme and show that it can obtain excellent performance.

  2. High-temperature superfluidity of the two-component Bose gas in a transition metal dichalcogenide bilayer

    Science.gov (United States)

    Berman, Oleg L.; Kezerashvili, Roman Ya.

    2016-06-01

    The high-temperature superfluidity of two-dimensional dipolar excitons in two parallel transition metal dichalcogenide (TMDC) layers is predicted. We study Bose-Einstein condensation in the two-component system of dipolar A and B excitons. The effective mass, energy spectrum of the collective excitations, the sound velocity, and critical temperature are obtained for different TMDC materials. It is shown that in the Bogoliubov approximation, the sound velocity in the two-component dilute exciton Bose gas is always larger than in any one-component exciton system. The difference between the sound velocities for two-component and one-component dilute gases is caused by the fact that the sound velocity for a two-component system depends on the reduced mass of A and B excitons, which is always smaller than the individual mass of A or B exciton. Due to this fact, the critical temperature Tc for superfluidity for the two-component exciton system in a TMDC bilayer is about one order of magnitude higher than Tc in any one-component exciton system. We propose to observe the superfluidity of two-dimensional dipolar excitons in two parallel TMDC layers, which causes two opposite superconducting currents in each TMDC layer.

  3. Annotation of Regular Polysemy

    DEFF Research Database (Denmark)

    Martinez Alonso, Hector

    Regular polysemy has received a lot of attention from the theory of lexical semantics and from computational linguistics. However, there is no consensus on how to represent the sense of underspecified examples at the token level, namely when annotating or disambiguating senses of metonymic words...

  4. Two-component systems in microbial communities: approaches and resources for generating and analyzing metagenomic data sets.

    Science.gov (United States)

    Podar, Mircea

    2007-01-01

    Two-component signal transduction represents the main mechanism by which bacterial cells interact with their environment. The functional diversity of two-component systems and their relative importance in the different taxonomic groups and ecotypes of bacteria has become evident with the availability of several hundred genomic sequences. The vast majority of bacteria, including many high rank taxonomic units, while being components of complex microbial communities remain uncultured (i.e., have not been isolated or grown in the laboratory). Environmental genomic data from such communities are becoming available, and in addition to its profound impact on microbial ecology it will propel molecular biological disciplines beyond the traditional model organisms. This chapter describes the general approaches used in generating environmental genomic data and how that data can be used to advance the study of two component-systems and signal transduction in general.

  5. Experimental investigation of the factors influencing the polymer-polymer bond strength during two component injection moulding

    DEFF Research Database (Denmark)

    Islam, Mohammad Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben

    2007-01-01

    . A thorough understanding of the factors that influence the bond strength of polymers is necessary for multi component polymer processing. This paper investigates the effects of the process and material parameters on the bond strength of two component polymer parts and identifies the factors which can......Two component injection moulding is a commercially important manufacturing process and a key technology for Moulded Interconnect Devices (MIDs). Many fascinating applications of two component or multi component polymer parts are restricted due to the weak interfacial adhesion of the polymers...... effectively control the adhesion between two polymers. The effects of environmental conditions on the bond strength after moulding are also investigated. The material selections and environmental conditions were chosen based on the suitability of MID production, but the results and discussion presented...

  6. A Two-Component Regulatory System Integrates Redox State and Population Density Sensing in Pseudomonas putida▿ †

    OpenAIRE

    Fernández-Piñar, Regina; Ramos, Juan Luis; Rodríguez-Herva, José Juan; Espinosa-Urgel, Manuel

    2008-01-01

    A two-component system formed by a sensor histidine kinase and a response regulator has been identified as an element participating in cell density signal transduction in Pseudomonas putida KT2440. It is a homolog of the Pseudomonas aeruginosa RoxS/RoxR system, which in turn belongs to the RegA/RegB family, described in photosynthetic bacteria as a key regulatory element. In KT2440, the two components are encoded by PP_0887 (roxS) and PP_0888 (roxR), which are transcribed in a single unit. Ch...

  7. Connecting two-component regulatory systems by a protein that protects a response regulator from dephosphorylation by its cognate sensor

    OpenAIRE

    Kato, Akinori; Groisman, Eduardo A.

    2004-01-01

    A fundamental question in signal transduction is how an organism integrates multiple signals into a cellular response. Here we report the mechanism by which the Salmonella PmrA/PmrB two-component system responds to the signal controlling the PhoP/PhoQ two-component system. We establish that the PhoP-activated PmrD protein binds to the phosphorylated form of the response regulator PmrA, preventing both its intrinsic dephosphorylation and that promoted by its cognate sensor kinase PmrB. This re...

  8. A Principle of Corresponding States for Two-Component, Self-Gravitating Fluids

    Directory of Open Access Journals (Sweden)

    Caimmi, R.

    2010-06-01

    Full Text Available Macrogases are defined as two-component,large-scale celestial objects where the subsystems interact only via gravitation.The macrogas equation of state is formulated and compared to the van der Waals (VDWequation of state for ordinary gases.By analogy, it is assumed that real macroisothermal curves in macrogases occur as real isothermal curves in ordinary gases, where a phase transition(vapour-liquid observed in ordinary gases and gas-stars assumed in macrogases takesplace along a horizontal linein the macrovolume-macropressure{small $({sf O}sX_mathrm{V}sX_mathrm{p}$} plane.The intersections between real and theoretical(deduced from the equation of state macro isothermalcurves, make two regions of equal surface as for ordinary gases obeying the VDW equation of state.A numerical algorithm is developed for determining the following points of a selected theoretical macroisothermal curve on the {small $({sf O}sX_mathrm{V}sX_mathrm{p}$} plane:the three intersections with the related real macroisothermal curve,and the two extremum points (one maximum and one minimum. Different kinds of macrogases are studied in detail: UU, where U density profiles are flat, to be conceived as a simple guidance case; HH, where H density profiles obey the Hernquist (1990 law, which satisfactorily fits the observed spheroidal components of galaxies; HN/NH, where N density profiles obey the Navarro-Frenk-White (1995,1996, 1997 law, which satisfactorily fits the simulated nonbaryonic dark matter haloes.A different trend is shown by theoretical macroisothermal curves on the{small $({sf O}sX_mathrm{V}sX_mathrm{p}$} plane,according to whether density profiles are sufficiently mild (UU or sufficiently steep (HH, HN/NH.In the former alternative, no critical macroisothermal curve exists, below or above which the trend is monotonous. In the latter alternative, a critical macroisothermal curve exists, as shown by VDW gases, where the critical point may be defined as the horizontal

  9. Sparse structure regularized ranking

    KAUST Repository

    Wang, Jim Jing-Yan

    2014-04-17

    Learning ranking scores is critical for the multimedia database retrieval problem. In this paper, we propose a novel ranking score learning algorithm by exploring the sparse structure and using it to regularize ranking scores. To explore the sparse structure, we assume that each multimedia object could be represented as a sparse linear combination of all other objects, and combination coefficients are regarded as a similarity measure between objects and used to regularize their ranking scores. Moreover, we propose to learn the sparse combination coefficients and the ranking scores simultaneously. A unified objective function is constructed with regard to both the combination coefficients and the ranking scores, and is optimized by an iterative algorithm. Experiments on two multimedia database retrieval data sets demonstrate the significant improvements of the propose algorithm over state-of-the-art ranking score learning algorithms.

  10. Regularized Reduced Order Models

    CERN Document Server

    Wells, David; Xie, Xuping; Iliescu, Traian

    2015-01-01

    This paper puts forth a regularization approach for the stabilization of proper orthogonal decomposition (POD) reduced order models (ROMs) for the numerical simulation of realistic flows. Two regularized ROMs (Reg-ROMs) are proposed: the Leray ROM (L-ROM) and the evolve-then-filter ROM (EF-ROM). These new Reg-ROMs use spatial filtering to smooth (regularize) various terms in the ROMs. Two spatial filters are used: a POD projection onto a POD subspace (Proj) and a new POD differential filter (DF). The four Reg-ROM/filter combinations are tested in the numerical simulation of the one-dimensional Burgers equation with a small diffusion coefficient and the three-dimensional flow past a circular cylinder at a low Reynolds number (Re = 100). Overall, the most accurate Reg-ROM/filter combination is EF-ROM-DF. Furthermore, the DF generally yields better results than Proj. Finally, the four Reg-ROM/filter combinations are computationally efficient and generally more accurate than the standard Galerkin ROM.

  11. Regularizing portfolio optimization

    Science.gov (United States)

    Still, Susanne; Kondor, Imre

    2010-07-01

    The optimization of large portfolios displays an inherent instability due to estimation error. This poses a fundamental problem, because solutions that are not stable under sample fluctuations may look optimal for a given sample, but are, in effect, very far from optimal with respect to the average risk. In this paper, we approach the problem from the point of view of statistical learning theory. The occurrence of the instability is intimately related to over-fitting, which can be avoided using known regularization methods. We show how regularized portfolio optimization with the expected shortfall as a risk measure is related to support vector regression. The budget constraint dictates a modification. We present the resulting optimization problem and discuss the solution. The L2 norm of the weight vector is used as a regularizer, which corresponds to a diversification 'pressure'. This means that diversification, besides counteracting downward fluctuations in some assets by upward fluctuations in others, is also crucial because it improves the stability of the solution. The approach we provide here allows for the simultaneous treatment of optimization and diversification in one framework that enables the investor to trade off between the two, depending on the size of the available dataset.

  12. The Campylobacter jejuni CprRS two-component regulatory system regulates aspects of the cell envelope

    Science.gov (United States)

    As a leading cause of foodborne bacterial gastroenteritis, Campylobacter jejuni is a significant human pathogen. C. jejuni lives commensally in the gastrointestinal tract of animals, but tolerates variable environments during transit to a susceptible host. A two-component regulatory system, CprRS, w...

  13. Cloning of a two-component signal transduction system of Xanthomonas campestris pv. phaseoli var. fuscans strain BXPF65

    DEFF Research Database (Denmark)

    Chan, JWYF; Maynard, Scott; Goodwin, PH

    1998-01-01

    A putative two-component signal transduction system was amplified and cloned from the plant pathogenic bacterium Xanthomonas campestris pv. phaseoli var. fuscans isolate BXPF65. The 620 bp amplified fragment was sequenced and analyzed with the BLAST Enhanced Alignment Utility (BEAUTY). BEAUTY ana...

  14. Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis

    NARCIS (Netherlands)

    Been, de M.W.H.J.; Francke, C.; Moezelaar, R.; Abee, T.; Siezen, R.J.

    2006-01-01

    Members of the Bacillus cereus group are ubiquitously present in the environment and can adapt to a wide range of environmental fluctuations. In bacteria, these adaptive responses are generally mediated by two-component signal transduction systems (TCSs), which consist of a histidine kinase (HK) and

  15. The YvfTU Two-component System is involved in plcR expression in Bacillus cereus

    NARCIS (Netherlands)

    Brillard, Julien; Susanna, Kim; Michaud, Caroline; Dargaignaratz, Claire; Gohar, Michel; Nielsen-Leroux, Christina; Ramarao, Nalini; Kolsto, Anne-Brit; Nguyen-The, Christophe; Lereclus, Didier; Broussolle, Veronique

    2008-01-01

    Background: Most extracellular virulence factors produced by Bacillus cereus are regulated by the pleiotropic transcriptional activator PlcR. Among strains belonging to the B. cereus group, the plcR gene is always located in the vicinity of genes encoding the YvfTU two-component system. The putative

  16. A Conserved Two-Component Signal Transduction System Controls the Response to Phosphate Starvation in Bifidobacterium breve UCC2003.

    NARCIS (Netherlands)

    Alvarez-Martin, P.; Fernandez, M.; O'Connell-Motherway, M.; O'Connell, K.J.; Sauvageot, N.; Fitzgerald, G.F.; Macsharry, J.; Zomer, A.L.; Sinderen, D. van

    2012-01-01

    This work reports on the identification and molecular characterization of the two-component regulatory system (2CRS) PhoRP, which controls the response to inorganic phosphate (P(i)) starvation in Bifidobacterium breve UCC2003. The response regulator PhoP was shown to bind to the promoter region of

  17. Experimental investigation of the factors influencing the polymer-polymer bond strength during two-component injection moulding

    DEFF Research Database (Denmark)

    Islam, Aminul; Hansen, Hans Nørgaard; Bondo, Martin

    2010-01-01

    Two-component injection moulding is a commercially important manufacturing process and a key technology for combining different material properties in a single plastic product. It is also one of most industrially adaptive process chain for manufacturing so-called moulded interconnect devices (MID...

  18. Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis

    NARCIS (Netherlands)

    Been, M.W.H.J. de; Francke, C.; Moezelaar, R.; Abee, T.; Siezen, R.J.

    2006-01-01

    Members of the Bacillus cereus group are ubiquitously present in the environment and can adapt to a wide range of environmental fluctuations. In bacteria, these adaptive responses are generally mediated by two-component signal transduction systems (TCSs), which consist of a histidine kinase (HK) and

  19. k-Walk-Regular Digraphs

    Institute of Scientific and Technical Information of China (English)

    Wen LIU; Jing LIN

    2011-01-01

    In this paper,we define a class of strongly connected digraph,called the k-walk-regular digraph,study some properties of it,provide its some algebraic characterization and point out that the O-walk-regular digraph is the same as the walk-regular digraph discussed BY Liu and Lin in 2010 and the D-walk-regular digraph is identical with the weakly distance-regular digraph defined by Comellas et al in 2004.

  20. Phenotype MicroArray Analysis of Escherichia coli K-12 Mutants with Deletions of All Two-Component Systems

    Science.gov (United States)

    Zhou, Lu; Lei, Xiang-He; Bochner, Barry R.; Wanner, Barry L.

    2003-01-01

    Two-component systems are the most common mechanism of transmembrane signal transduction in bacteria. A typical system consists of a histidine kinase and a partner response regulator. The histidine kinase senses an environmental signal, which it transmits to its partner response regulator via a series of autophosphorylation, phosphotransfer, and dephosphorylation reactions. Much work has been done on particular systems, including several systems with regulatory roles in cellular physiology, communication, development, and, in the case of bacterial pathogens, the expression of genes important for virulence. We used two methods to investigate two-component regulatory systems in Escherichia coli K-12. First, we systematically constructed mutants with deletions of all two-component systems by using a now-standard technique of gene disruption (K. A. Datsenko and B. L. Wanner, Proc. Natl. Acad. Sci. USA 97:6640-6645, 2000). We then analyzed these deletion mutants with a new technology called Phenotype MicroArrays, which permits assays of nearly 2,000 growth phenotypes simultaneously. In this study we tested 100 mutants, including mutants with individual deletions of all two-component systems and several related genes, including creBC-regulated genes (cbrA and cbrBC), phoBR-regulated genes (phoA, phoH, phnCDEFGHIJKLMNOP, psiE, and ugpBAECQ), csgD, luxS, and rpoS. The results of this battery of nearly 200,000 tests provided a wealth of new information concerning many of these systems. Of 37 different two-component mutants, 22 showed altered phenotypes. Many phenotypes were expected, and several new phenotypes were also revealed. The results are discussed in terms of the biological roles and other information concerning these systems, including DNA microarray data for a large number of the same mutants. Other mutational effects are also discussed. PMID:12897016

  1. The multi-step phosphorelay mechanism of unorthodox two-component systems in E. coli realizes ultrasensitivity to stimuli while maintaining robustness to noises.

    Science.gov (United States)

    Kim, Jeong-Rae; Cho, Kwang-Hyun

    2006-12-01

    E. coli has two-component systems composed of histidine kinase proteins and response regulator proteins. For a given extracellular stimulus, a histidine kinase senses the stimulus, autophosphorylates and then passes the phosphates to the cognate response regulators. The histidine kinase in an orthodox two-component system has only one histidine domain where the autophosphorylation occurs, but a histidine kinase in some unusual two-component systems (unorthodox two-component systems) has two histidine domains and one aspartate domain. So, the unorthodox two-component systems have more complex phosphorelay mechanisms than orthodox two-component systems. In general, the two-component systems are required to promptly respond to external stimuli for survival of E. coli. In this respect, the complex multi-step phosphorelay mechanism seems to be disadvantageous, but there are several unorthodox two-component systems in E. coli. In this paper, we investigate the reason why such unorthodox two-component systems are present in E. coli. For this purpose, we have developed simplified mathematical models of both orthodox and unorthodox two-component systems and analyzed their dynamical characteristics through extensive computer simulations. We have finally revealed that the unorthodox two-component systems realize ultrasensitive responses to external stimuli and also more robust responses to noises than the orthodox two-component systems.

  2. Annotation of Regular Polysemy

    DEFF Research Database (Denmark)

    Martinez Alonso, Hector

    Regular polysemy has received a lot of attention from the theory of lexical semantics and from computational linguistics. However, there is no consensus on how to represent the sense of underspecified examples at the token level, namely when annotating or disambiguating senses of metonymic words...... like “London” (Location/Organization) or “cup” (Container/Content). The goal of this dissertation is to assess whether metonymic sense underspecification justifies incorporating a third sense into our sense inventories, thereby treating the underspecified sense as independent from the literal...

  3. From regular modules to von Neumann regular rings via coordinatization

    Directory of Open Access Journals (Sweden)

    Leonard Daus

    2014-07-01

    Full Text Available In this paper we establish a very close link (in terms of von Neu- mann's coordinatization between regular modules introduced by Zel- manowitz, on one hand, and von Neumann regular rings, on the other hand: we prove that the lattice L^{fg}(M of all finitely generated submodules of a finitely generated regular module M, over an arbitrary ring, can be coordinatized as the lattice of all principal right ideals of some von Neumann regular ring S.

  4. Modular Regularization Algorithms

    DEFF Research Database (Denmark)

    Jacobsen, Michael

    2004-01-01

    The class of linear ill-posed problems is introduced along with a range of standard numerical tools and basic concepts from linear algebra, statistics and optimization. Known algorithms for solving linear inverse ill-posed problems are analyzed to determine how they can be decomposed into indepen......The class of linear ill-posed problems is introduced along with a range of standard numerical tools and basic concepts from linear algebra, statistics and optimization. Known algorithms for solving linear inverse ill-posed problems are analyzed to determine how they can be decomposed...... into independent modules. These modules are then combined to form new regularization algorithms with other properties than those we started out with. Several variations are tested using the Matlab toolbox MOORe Tools created in connection with this thesis. Object oriented programming techniques are explained...... and used to set up the illposed problems in the toolbox. Hereby, we are able to write regularization algorithms that automatically exploit structure in the ill-posed problem without being rewritten explicitly. We explain how to implement a stopping criteria for a parameter choice method based upon...

  5. Structure for Regular Inclusions

    CERN Document Server

    Pitts, David R

    2012-01-01

    We study pairs (C,D) of unital C*-algebras where D is an abelian C*-subalgebra of C which is regular in C. When D is a MASA in C, there exists a unique completely positive unital map E of C into the injective envelope I(D) of D whose restriction to D is the identity on D. We show that the left kernel of E is the unique closed two-sided ideal of C maximal with respect to having trivial intersection with D. We introduce a new class of well behaved state extensions, the compatible states; we identify compatible states when D is a MASA in C in terms of groups constructed from local dynamics near a pure state on D. When C is separable, D is a MASA in C, and the pair (C,D) is regular, the set of pure states on D with unique state extensions to C is dense in D. The map E can be used as a substitute for a conditional expectation in the construction of coordinates for C relative to D. We show that certain classes of compatible states have natural groupoid operations, and we show that constructions of Kumjian and Renau...

  6. Two-component Dirac-like Hamiltonian for generating quantum walk on one-, two- and three-dimensional lattices.

    Science.gov (United States)

    Chandrashekar, C M

    2013-10-03

    From the unitary operator used for implementing two-state discrete-time quantum walk on one-, two- and three- dimensional lattice we obtain a two-component Dirac-like Hamiltonian. In particular, using different pairs of Pauli basis as position translation states we obtain three different form of Hamiltonians for evolution on one-dimensional lattice. We extend this to two- and three-dimensional lattices using different Pauli basis states as position translation states for each dimension and show that the external coin operation, which is necessary for one-dimensional walk is not a necessary requirement for a walk on higher dimensions but can serve as an additional resource to control the dynamics. The two-component Hamiltonian we present here for quantum walk on different lattices can serve as a general framework to simulate, control, and study the dynamics of quantum systems governed by Dirac-like Hamiltonian.

  7. Salmonella enterica serovar Typhimurium BaeSR two-component system positively regulates sodA in response to ciprofloxacin.

    Science.gov (United States)

    Guerrero, P; Collao, B; Álvarez, R; Salinas, H; Morales, E H; Calderón, I L; Saavedra, C P; Gil, F

    2013-10-01

    In response to antibiotics, bacteria activate regulatory systems that control the expression of genes that participate in detoxifying these compounds, like multidrug efflux systems. We previously demonstrated that the BaeSR two-component system from Salmonella enterica serovar Typhimurium (S. Typhimurium) participates in the detection of ciprofloxacin, a bactericidal antibiotic, and in the positive regulation of mdtA, an efflux pump implicated in antibiotic resistance. In the present work, we provide further evidence for a role of the S. Typhimurium BaeSR two-component system in response to ciprofloxacin treatment and show that it regulates sodA expression. We demonstrate that, in the absence of BaeSR, the transcript levels of sodA and the activity of its gene product are lower. Using electrophoretic mobility shift assays and transcriptional fusions, we demonstrate that BaeR regulates sodA by a direct interaction with the promoter region.

  8. Interference of Two-Component Bose-Einstein Condensates with a Coupling Drive in Presence of Dissipation

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The interference of the two-component Bose-Einstein condensates with a coupling drive in the presence of the dissipation is studied. We find that when the two-component Bose-Einstein condensates are initially in the coherent states, for the smaller dissipation parameters compared with that of the rf frequency ωrf, the interference intensity exhibits damply oscillation behavior, whereas when the dissipation parameters are larger than that of the ωrf, the interference intensity exhibits a fast attenuation behavior. As a comparison, the interference intensity in the absence of the dissipation is also studied. We conclude that the dissipation of the system can be evaluated by selecting the ωrf experimentally.

  9. Localization of a two-component Bose–Einstein condensate in a two-dimensional bichromatic optical lattice

    Energy Technology Data Exchange (ETDEWEB)

    Xi, Kui-Tian, E-mail: kuitianxi@gmail.com; Li, Jinbin, E-mail: jinbin@nuaa.edu.cn; Shi, Da-Ning, E-mail: shi@nuaa.edu.cn

    2014-03-01

    We consider a weakly interacting two-component Bose–Einstein condensate (BEC) in a two-dimensional (2D) quasi-periodic bichromatic optical lattice (BOL). The problem is studied by means of split-step Crank–Nicolson method. The effects of weak intra- and inter-component interactions on localization of a two-component BEC are investigated. It is shown that in the quasi-2D regime, due to the enhanced disorder, there is no symmetry breaking like that in the one-dimensional (1D) case under a sine-typed potential, while configurations of density profiles are also quite different from that in the 1D case. By modulating interactions, the interplay of disorder and weak repulsive or attractive interactions is studied in detail. The cases with sine- and cosine-typed potentials acting on components 1 and 2 respectively are also discussed.

  10. A pair of two-component regulatory genes ecrA1/A2 in S.coelicolor

    Institute of Scientific and Technical Information of China (English)

    李永泉; 岑沛霖; 陈时飞; 吴丹; 郑静

    2004-01-01

    Two-component genes are kinds of genetic elements involved in regulation of antibiotic production in Streptomyces coelicolor. DNA microarray analysis revealed that ecrA1/A2, which mapped at distant sites from red locus and encode respectively the kinase and regulator, expressed coordinately with genes of Red specific biosynthetic pathway, ecrA1 and ecrA2 gene-disruptive mutants were constructed using homogenotisation by reciprocal double crossover. Fermentation data showed that the undecylprodigiosin (Red) level of production was lower than that of wild-type strain. However, the change of the actinorhodin (Act) production level was not significant compared with wild type. Thus, these experiment results confirmed that the two-component system ecrA 1/A2 was positive regulatory element for red gene cluster.

  11. The implicit contribution of slab modes to the perpendicular diffusion coefficient of particles interacting with two-component turbulence

    CERN Document Server

    Shalchi, Andreas

    2016-01-01

    We explore the transport of energetic particles in two-component turbulence in which the stochastic magnetic field is assumed to be a superposition of slab and two-dimensional modes. It is known that in magnetostatic slab turbulence, the motion of particles across the mean magnetic field is subdiffusive. If a two-dimensional component is added, diffusion is recovered. It was also shown before that in two-component turbulence, the slab modes do not explicitly contribute to the perpendicular diffusion coefficient. In the current paper the implicit contribution of slab modes is explored and it is shown that this contribution leads to a reduction of the perpendicular diffusion coefficient. This effect improves the agreement between simulations and analytical theory. Furthermore, the obtained results are relevant for investigations of diffusive shock acceleration.

  12. Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis.

    Directory of Open Access Journals (Sweden)

    Jeffrey M Skerker

    2005-10-01

    Full Text Available Two-component signal transduction systems, comprised of histidine kinases and their response regulator substrates, are the predominant means by which bacteria sense and respond to extracellular signals. These systems allow cells to adapt to prevailing conditions by modifying cellular physiology, including initiating programs of gene expression, catalyzing reactions, or modifying protein-protein interactions. These signaling pathways have also been demonstrated to play a role in coordinating bacterial cell cycle progression and development. Here we report a system-level investigation of two-component pathways in the model organism Caulobacter crescentus. First, by a comprehensive deletion analysis we show that at least 39 of the 106 two-component genes are required for cell cycle progression, growth, or morphogenesis. These include nine genes essential for growth or viability of the organism. We then use a systematic biochemical approach, called phosphotransfer profiling, to map the connectivity of histidine kinases and response regulators. Combining these genetic and biochemical approaches, we identify a new, highly conserved essential signaling pathway from the histidine kinase CenK to the response regulator CenR, which plays a critical role in controlling cell envelope biogenesis and structure. Depletion of either cenK or cenR leads to an unusual, severe blebbing of cell envelope material, whereas constitutive activation of the pathway compromises cell envelope integrity, resulting in cell lysis and death. We propose that the CenK-CenR pathway may be a suitable target for new antibiotic development, given previous successes in targeting the bacterial cell wall. Finally, the ability of our in vitro phosphotransfer profiling method to identify signaling pathways that operate in vivo takes advantage of an observation that histidine kinases are endowed with a global kinetic preference for their cognate response regulators. We propose that this

  13. Systematic Dissection and Trajectory-Scanning Mutagenesis of the Molecular Interface That Ensures Specificity of Two-Component Signaling Pathways

    Science.gov (United States)

    Lubin, Emma A.; Ashenberg, Orr; Skerker, Jeffrey M.; Laub, Michael T.

    2010-01-01

    Two-component signal transduction systems enable bacteria to sense and respond to a wide range of environmental stimuli. Sensor histidine kinases transmit signals to their cognate response regulators via phosphorylation. The faithful transmission of information through two-component pathways and the avoidance of unwanted cross-talk require exquisite specificity of histidine kinase-response regulator interactions to ensure that cells mount the appropriate response to external signals. To identify putative specificity-determining residues, we have analyzed amino acid coevolution in two-component proteins and identified a set of residues that can be used to rationally rewire a model signaling pathway, EnvZ-OmpR. To explore how a relatively small set of residues can dictate partner selectivity, we combined alanine-scanning mutagenesis with an approach we call trajectory-scanning mutagenesis, in which all mutational intermediates between the specificity residues of EnvZ and another kinase, RstB, were systematically examined for phosphotransfer specificity. The same approach was used for the response regulators OmpR and RstA. Collectively, the results begin to reveal the molecular mechanism by which a small set of amino acids enables an individual kinase to discriminate amongst a large set of highly-related response regulators and vice versa. Our results also suggest that the mutational trajectories taken by two-component signaling proteins following gene or pathway duplication may be constrained and subject to differential selective pressures. Only some trajectories allow both the maintenance of phosphotransfer and the avoidance of unwanted cross-talk. PMID:21124821

  14. Two-Component Signal Transduction Pathways Regulating Growth and Cell Cycle Progression in a Bacterium: A System-Level Analysis

    Science.gov (United States)

    Skerker, Jeffrey M; Prasol, Melanie S; Perchuk, Barrett S; Biondi, Emanuele G

    2005-01-01

    Two-component signal transduction systems, comprised of histidine kinases and their response regulator substrates, are the predominant means by which bacteria sense and respond to extracellular signals. These systems allow cells to adapt to prevailing conditions by modifying cellular physiology, including initiating programs of gene expression, catalyzing reactions, or modifying protein–protein interactions. These signaling pathways have also been demonstrated to play a role in coordinating bacterial cell cycle progression and development. Here we report a system-level investigation of two-component pathways in the model organism Caulobacter crescentus. First, by a comprehensive deletion analysis we show that at least 39 of the 106 two-component genes are required for cell cycle progression, growth, or morphogenesis. These include nine genes essential for growth or viability of the organism. We then use a systematic biochemical approach, called phosphotransfer profiling, to map the connectivity of histidine kinases and response regulators. Combining these genetic and biochemical approaches, we identify a new, highly conserved essential signaling pathway from the histidine kinase CenK to the response regulator CenR, which plays a critical role in controlling cell envelope biogenesis and structure. Depletion of either cenK or cenR leads to an unusual, severe blebbing of cell envelope material, whereas constitutive activation of the pathway compromises cell envelope integrity, resulting in cell lysis and death. We propose that the CenK–CenR pathway may be a suitable target for new antibiotic development, given previous successes in targeting the bacterial cell wall. Finally, the ability of our in vitro phosphotransfer profiling method to identify signaling pathways that operate in vivo takes advantage of an observation that histidine kinases are endowed with a global kinetic preference for their cognate response regulators. We propose that this system

  15. Two-component signal transduction in Corynebacterium glutamicum and other corynebacteria: on the way towards stimuli and targets.

    Science.gov (United States)

    Bott, Michael; Brocker, Melanie

    2012-06-01

    In bacteria, adaptation to changing environmental conditions is often mediated by two-component signal transduction systems. In the prototypical case, a specific stimulus is sensed by a membrane-bound histidine kinase and triggers autophosphorylation of a histidine residue. Subsequently, the phosphoryl group is transferred to an aspartate residue of the cognate response regulator, which then becomes active and mediates a specific response, usually by activating and/or repressing a set of target genes. In this review, we summarize the current knowledge on two-component signal transduction in Corynebacterium glutamicum. This Gram-positive soil bacterium is used for the large-scale biotechnological production of amino acids and can also be applied for the synthesis of a wide variety of other products, such as organic acids, biofuels, or proteins. Therefore, C. glutamicum has become an important model organism in industrial biotechnology and in systems biology. The type strain ATCC 13032 possesses 13 two-component systems and the role of five has been elucidated in recent years. They are involved in citrate utilization (CitAB), osmoregulation and cell wall homeostasis (MtrAB), adaptation to phosphate starvation (PhoSR), adaptation to copper stress (CopSR), and heme homeostasis (HrrSA). As C. glutamicum does not only face changing conditions in its natural environment, but also during cultivation in industrial bioreactors of up to 500 m(3) volume, adaptability can also be crucial for good performance in biotechnological production processes. Detailed knowledge on two-component signal transduction and regulatory networks therefore will contribute to both the application and the systemic understanding of C. glutamicum and related species.

  16. Influence of two-component signal transduction systems of Lactobacillus casei BL23 on tolerance to stress conditions.

    Science.gov (United States)

    Alcántara, Cristina; Revilla-Guarinos, Ainhoa; Zúñiga, Manuel

    2011-02-01

    Lactobacillus casei BL23 carries 17 two-component signal transduction systems. Insertional mutations were introduced into each gene encoding the cognate response regulators, and their effects on growth under different conditions were assayed. Inactivation of systems TC01, TC06, and TC12 (LCABL_02080-LCABL_02090, LCABL_12050-LCABL_12060, and LCABL_19600-LCABL_19610, respectively) led to major growth defects under the conditions assayed.

  17. The graphic representations for the one-dimensional solutions of problem from elastic mechanic deformations of two-component mixture

    Directory of Open Access Journals (Sweden)

    Ghenadie Bulgac

    2006-12-01

    Full Text Available In this paper we find the analytical solution of simple one-dimensional unsteady elastic problem of two-component mixture using Laplace integral transformation. The integral transformations simplify the initial motion systems for finding analytical solutions. The analytical solutions are represented as the graphic on time dependence in the fixed point of medium, and the graphic on the horizontal coordinate at the fixed time.

  18. Organic salts and aromatic substrates in two-component gel phase formation: the study of properties and release processes.

    Science.gov (United States)

    Vitale, Paola; D'Anna, Francesca; Marullo, Salvatore; Noto, Renato

    2015-09-07

    To identify gel phases able to act as confined reaction media or materials for the removal of organic pollutants, we studied two-component gel phases formed by naphthalenedisulfonate diimidazolium salts in the presence of some organic guests, in 1-propanol solution. Guests differing in π-surface area, bulkiness and electronic properties were taken into account. Soft materials obtained were investigated for their thermal stability, self-repairing ability and morphology. Furthermore, two-component gel phase formation was studied using resonance light scattering (RLS) measurements. Guest release processes from the gel phase were also studied. These processes were monitored as a function of time using both UV-vis and RLS measurements and considering important parameters such as the gelator concentration, the nature of extraction solvent and the extension of contact surface area between solvent and gel phase. Data collected shed light on the properties of the two-component gels and could represent a useful tool to better plan the application of these soft materials.

  19. Dynamics of coupled simplest chaotic two-component electronic circuits and its potential application to random bit generation

    Energy Technology Data Exchange (ETDEWEB)

    Modeste Nguimdo, Romain, E-mail: Romain.Nguimdo@vub.ac.be [Applied Physics Research Group, APHY, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussel (Belgium); Tchitnga, Robert [Laboratory of Electronics, Automation and Signal Processing, Department of Physics, University of Dschang, P.O. Box 67, Dschang (Cameroon); Woafo, Paul [Laboratory of Modelling and Simulation in Engineering and Biological Physics, Faculty of Science, University of Yaoundé I, P.O. Box 812, Yaoundé (Cameroon)

    2013-12-15

    We numerically investigate the possibility of using a coupling to increase the complexity in simplest chaotic two-component electronic circuits operating at high frequency. We subsequently show that complex behaviors generated in such coupled systems, together with the post-processing are suitable for generating bit-streams which pass all the NIST tests for randomness. The electronic circuit is built up by unidirectionally coupling three two-component (one active and one passive) oscillators in a ring configuration through resistances. It turns out that, with such a coupling, high chaotic signals can be obtained. By extracting points at fixed interval of 10 ns (corresponding to a bit rate of 100 Mb/s) on such chaotic signals, each point being simultaneously converted in 16-bits (or 8-bits), we find that the binary sequence constructed by including the 10(or 2) least significant bits pass statistical tests of randomness, meaning that bit-streams with random properties can be achieved with an overall bit rate up to 10×100 Mb/s =1Gbit/s (or 2×100 Mb/s =200 Megabit/s). Moreover, by varying the bias voltages, we also investigate the parameter range for which more complex signals can be obtained. Besides being simple to implement, the two-component electronic circuit setup is very cheap as compared to optical and electro-optical systems.

  20. Localization of a two-component Bose–Einstein condensate in a one-dimensional random potential

    Energy Technology Data Exchange (ETDEWEB)

    Xi, Kui-Tian; Li, Jinbin, E-mail: jinbin@nuaa.edu.cn; Shi, Da-Ning, E-mail: shi@nuaa.edu.cn

    2015-02-15

    We consider a weakly interacting two-component Bose–Einstein condensate (BEC) in a one-dimensional random speckle potential. The problem is studied with solutions of Gross–Pitaevskii (GP) equations by means of numerical method in Crank–Nicolson scheme. Properties of various cases owing to the competition of disorder and repulsive interactions of a cigar-shaped two-component BEC are discussed in detail. It is shown that in the central region, phase separation of a two-component BEC is not only affected by the intra- and inter-component interactions, but also influenced by the strength of the random speckle potential. Due to the strong disorder of the potential, the criterion of phase separation which is independent of the trap strength in an ordered potential, such as a harmonic potential, is no longer available. The influence of different random numbers generated by distinct processes on localization of BEC in the random potential is also investigated, as well as the configurations of the density profiles in the tail regions.

  1. Purification and assays of Rhodobacter capsulatus RegB-RegA two-component signal transduction system.

    Science.gov (United States)

    Swem, Lee R; Swem, Danielle L; Wu, Jiang; Bauer, Carl E

    2007-01-01

    Two-component signal-transduction systems, composed of a histidine-sensor kinase and a DNA-binding response regulator, allow bacteria to detect environmental changes and adjust cellular physiology to live more efficiently in a broad distribution of niches. Although many two-component signal-transduction systems are known, a limited number of signals that stimulate these systems have been discovered. This chapter describes the purification and characterization of the predominant two-component signal-transduction system utilized by Rhodobacter capsulatus, a nonsulfur purple photosynthetic bacterium. Specifically, we explain the overexpression, detergent solubilization, and purification of the full-length membrane-spanning histidine-sensor kinase RegB. We also provide a method to measure autophosphorylation of RegB and discern the effect of its signal molecule, ubiquinone, on autophosphorylation levels. In addition we describe the overexpression and purification of the cognate response regulator RegA and a technique used to visualize the phosphotransfer reaction from RegB to RegA.

  2. Two-Component Signal Transduction Systems That Regulate the Temporal and Spatial Expression of Myxococcus xanthus Sporulation Genes.

    Science.gov (United States)

    Sarwar, Zaara; Garza, Anthony G

    2015-09-14

    When starved for nutrients, Myxococcus xanthus produces a biofilm that contains a mat of rod-shaped cells, known as peripheral rods, and aerial structures called fruiting bodies, which house thousands of dormant and stress-resistant spherical spores. Because rod-shaped cells differentiate into spherical, stress-resistant spores and spore differentiation occurs only in nascent fruiting bodies, many genes and multiple levels of regulation are required. Over the past 2 decades, many regulators of the temporal and spatial expression of M. xanthus sporulation genes have been uncovered. Of these sporulation gene regulators, two-component signal transduction circuits, which typically contain a histidine kinase sensor protein and a transcriptional regulator known as response regulator, are among the best characterized. In this review, we discuss prototypical two-component systems (Nla6S/Nla6 and Nla28S/Nla28) that regulate an early, preaggregation phase of sporulation gene expression during fruiting body development. We also discuss orphan response regulators (ActB and FruA) that regulate a later phase of sporulation gene expression, which begins during the aggregation stage of fruiting body development. In addition, we summarize the research on a complex two-component system (Esp) that is important for the spatial regulation of sporulation. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

  3. Five new Fast Radio Bursts from the HTRU high latitude survey: first evidence for two-component bursts

    CERN Document Server

    Champion, D J; Kramer, M; Keith, M J; Bailes, M; Barr, E D; Bates, S D; Bhat, N D R; Burgay, M; Burke-Spolaor, S; Flynn, C M L; Jameson, A; Johnston, S; Ng, C; Levin, L; Possenti, A; Stappers, B W; van Straten, W; Tiburzi, C; Lyne, A G

    2015-01-01

    The detection of five new fast radio bursts (FRBs) found in the High Time Resolution Universe high latitude survey is presented. The rate implied is 6$^{+4}_{-3}\\times~10^3$ (95%) FRBs sky$^{-1}$ day$^{-1}$ above a fluence of between 0.13 and 5.9 Jy ms for FRBs between 0.128 and 262 ms in duration. One of these FRBs has a clear two-component profile, each component is similar to the known population of single component FRBs and are separated by 2.4(4) ms. All the FRB components appear to be unresolved following deconvolution with a scattering tail and accounting for intra-channel smearing. The two-component FRB also has the highest dispersion measure (1629 pc cm$^{-3}$) of any FRB to-date. Many of the proposed models to explain FRBs use a single high energy event involving compact objects (such as neutron star mergers) and therefore cannot easily explain a two-component FRB. Models that are based on extreme versions of flaring, pulsing or orbital events however could produce multiple component profiles. The c...

  4. Two-component Langmuir monolayers and LB films of DPPC with partially fluorinated alcohol (F8H9OH).

    Science.gov (United States)

    Nakahara, Hiromichi; Hirano, Chikayo; Shibata, Osamu

    2013-01-01

    The interaction of (perfluorooctyl)nonanol (F8H9OH) with dipalmitoylphosphatidylcholine (DPPC) was systematically studied in two-component monolayers at air-water interface. The thermodynamic property and phase morphology of the monolayers were investigated by isotherm measurements and several microscopic methods such as Brewster angle microscopy, fluorescence microscopy, and atomic force microscopy (AFM). The AFM topographies for Langmuir-Blodgett films of F8H9OH exhibit the formation of monodispersed surface micelles. In the two-component system, the incorporation of F8H9OH induces condensation (or solidification) of DPPC monolayers. The excess Gibbs free energy and interaction parameter (or energy) of the two components were calculated from the isotherm data. Both the phase transition pressure for the coexistence of ordered and disordered phases and collapse pressure of monolayers vary with the mole fraction of F8H9OH, indicating binary miscibility between F8H9OH and DPPC within a monolayer state. The miscibility is also confirmed visually by in situ and ex situ microscopy at micro- and nanometer scales.

  5. Evolutionary internalized regularities.

    Science.gov (United States)

    Schwartz, R

    2001-08-01

    Roger Shepard's proposals and supporting experiments concerning evolutionary internalized regularities have been very influential in the study of vision and in other areas of psychology and cognitive science. This paper examines issues concerning the need, nature, explanatory role, and justification for postulating such internalized constraints. In particular, I seek further clarification from Shepard on how best to understand his claim that principles of kinematic geometry underlie phenomena of motion perception. My primary focus is on the ecological validity of Shepard's kinematic constraint in the context of ordinary motion perception. First, I explore the analogy Shepard draws between internalized circadian rhythms and the supposed internalization of kinematic geometry. Next, questions are raised about how to interpret and justify applying results from his own and others' experimental studies of apparent motion to more everyday cases of motion perception in richer environments. Finally, some difficulties with Shepard's account of the evolutionary development of his kinematic constraint are considered.

  6. The Escherichia coli BarA-UvrY two-component system is a virulence determinant in the urinary tract

    Directory of Open Access Journals (Sweden)

    Georgellis Dimitris

    2006-03-01

    Full Text Available Abstract Background The Salmonella enterica BarA-SirA, the Erwinia carotovora ExpS-ExpA, the Vibrio cholerae BarA-VarA and the Pseudomonas spp GacS-GacA all belong to the same orthologous family of two-component systems as the Escherichia coli BarA-UvrY. In the first four species it has been demonstrated that disruption of this two-component system leads to a clear reduction in virulence of the bacteria. Our aim was to determine if the Escherichia coli BarA-UvrY two-component system is connected with virulence using a monkey cystitis model. Results Cystitis was generated in Macaque fascularis monkeys by infecting the bladder with a 1:1 mixture of the uropathogenic Escherichia coli isolate DS17 and a derivative where the uvrY gene had been disrupted with a kanamycin resistance gene. Urine was collected through bladder punctuation at subsequent time intervals and the relative amount of uvrY mutant was determined. This showed that inactivation of the UvrY response regulator leads to a reduced fitness. In similar competitions in culture flasks with Luria Broth (LB the uvrY mutant rather had a higher fitness than the wild type. When the competitions were done in flasks with human urine the uvrY mutant initially had a lower fitness. This was followed by a fluctuation in the level of mutant in the long-term culture, with a pattern that was specific for the individual urines that were tested. Addition of LB to the different urine competition cultures however clearly led to a consistently higher fitness of the uvrY mutant. Conclusion This paper demonstrates that the BarA-UvrY two-component system is a determinant for virulence in a monkey cystitis model. The observed competition profiles strengthen our previous hypothesis that disruption of the BarA-UvrY two-component system impairs the ability of the bacteria to switch between different carbon sources. The urine in the bladder contains several different carbon sources and its composition changes over

  7. Adaptive Regularization of Neural Classifiers

    DEFF Research Database (Denmark)

    Andersen, Lars Nonboe; Larsen, Jan; Hansen, Lars Kai

    1997-01-01

    We present a regularization scheme which iteratively adapts the regularization parameters by minimizing the validation error. It is suggested to use the adaptive regularization scheme in conjunction with optimal brain damage pruning to optimize the architecture and to avoid overfitting. Furthermo...

  8. Rotating regular black holes

    CERN Document Server

    Bambi, Cosimo

    2013-01-01

    The formation of spacetime singularities is a quite common phenomenon in General Relativity and it is regulated by specific theorems. It is widely believed that spacetime singularities do not exist in Nature, but that they represent a limitation of the classical theory. While we do not yet have any solid theory of quantum gravity, toy models of black hole solutions without singularities have been proposed. So far, there are only non-rotating regular black holes in the literature. These metrics can be hardly tested by astrophysical observations, as the black hole spin plays a fundamental role in any astrophysical process. In this letter, we apply the Newman-Janis algorithm to the Hayward and to the Bardeen black hole metrics. In both cases, we obtain a family of rotating solutions. Every solution corresponds to a different matter configuration. Each family has one solution with special properties, which can be written in Kerr-like form in Boyer-Lindquist coordinates. These special solutions are of Petrov type ...

  9. Rotating regular black holes

    Energy Technology Data Exchange (ETDEWEB)

    Bambi, Cosimo, E-mail: bambi@fudan.edu.cn; Modesto, Leonardo, E-mail: lmodesto@fudan.edu.cn

    2013-04-25

    The formation of spacetime singularities is a quite common phenomenon in General Relativity and it is regulated by specific theorems. It is widely believed that spacetime singularities do not exist in Nature, but that they represent a limitation of the classical theory. While we do not yet have any solid theory of quantum gravity, toy models of black hole solutions without singularities have been proposed. So far, there are only non-rotating regular black holes in the literature. These metrics can be hardly tested by astrophysical observations, as the black hole spin plays a fundamental role in any astrophysical process. In this Letter, we apply the Newman–Janis algorithm to the Hayward and to the Bardeen black hole metrics. In both cases, we obtain a family of rotating solutions. Every solution corresponds to a different matter configuration. Each family has one solution with special properties, which can be written in Kerr-like form in Boyer–Lindquist coordinates. These special solutions are of Petrov type D, they are singularity free, but they violate the weak energy condition for a non-vanishing spin and their curvature invariants have different values at r=0 depending on the way one approaches the origin. We propose a natural prescription to have rotating solutions with a minimal violation of the weak energy condition and without the questionable property of the curvature invariants at the origin.

  10. Ensemble manifold regularization.

    Science.gov (United States)

    Geng, Bo; Tao, Dacheng; Xu, Chao; Yang, Linjun; Hua, Xian-Sheng

    2012-06-01

    We propose an automatic approximation of the intrinsic manifold for general semi-supervised learning (SSL) problems. Unfortunately, it is not trivial to define an optimization function to obtain optimal hyperparameters. Usually, cross validation is applied, but it does not necessarily scale up. Other problems derive from the suboptimality incurred by discrete grid search and the overfitting. Therefore, we develop an ensemble manifold regularization (EMR) framework to approximate the intrinsic manifold by combining several initial guesses. Algorithmically, we designed EMR carefully so it 1) learns both the composite manifold and the semi-supervised learner jointly, 2) is fully automatic for learning the intrinsic manifold hyperparameters implicitly, 3) is conditionally optimal for intrinsic manifold approximation under a mild and reasonable assumption, and 4) is scalable for a large number of candidate manifold hyperparameters, from both time and space perspectives. Furthermore, we prove the convergence property of EMR to the deterministic matrix at rate root-n. Extensive experiments over both synthetic and real data sets demonstrate the effectiveness of the proposed framework.

  11. A novel two-component response regulator links rpf with biofilm formation and virulence of Xanthomonas axonopodis pv. citri.

    Directory of Open Access Journals (Sweden)

    Tzu-Pi Huang

    Full Text Available Citrus bacterial canker caused by Xanthomonas axonopodis pv. citri is a serious disease that impacts citrus production worldwide, and X. axonopodis pv. citri is listed as a quarantine pest in certain countries. Biofilm formation is important for the successful development of a pathogenic relationship between various bacteria and their host(s. To understand the mechanisms of biofilm formation by X. axonopodis pv. citri strain XW19, the strain was subjected to transposon mutagenesis. One mutant with a mutation in a two-component response regulator gene that was deficient in biofilm formation on a polystyrene microplate was selected for further study. The protein was designated as BfdR for biofilm formation defective regulator. BfdR from strain XW19 shares 100% amino acid sequence identity with XAC1284 of X. axonopodis pv. citri strain 306 and 30-100% identity with two-component response regulators in various pathogens and environmental microorganisms. The bfdR mutant strain exhibited significantly decreased biofilm formation on the leaf surfaces of Mexican lime compared with the wild type strain. The bfdR mutant was also compromised in its ability to cause canker lesions. The wild-type phenotype was restored by providing pbfdR in trans in the bfdR mutant. Our data indicated that BfdR did not regulate the production of virulence-related extracellular enzymes including amylase, lipase, protease, and lecithinase or the expression of hrpG, rfbC, and katE; however, BfdR controlled the expression of rpfF in XVM2 medium, which mimics cytoplasmic fluids in planta. In conclusion, biofilm formation on leaf surfaces of citrus is important for canker development in X. axonopodis pv. citri XW19. The process is controlled by the two-component response regulator BfdR via regulation of rpfF, which is required for the biosynthesis of a diffusible signal factor.

  12. Bacillus subtilis Two-Component System Sensory Kinase DegS Is Regulated by Serine Phosphorylation in Its Input Domain

    Science.gov (United States)

    Jers, Carsten; Kobir, Ahasanul; Søndergaard, Elsebeth Oline; Jensen, Peter Ruhdal; Mijakovic, Ivan

    2011-01-01

    Bacillus subtilis two-component system DegS/U is well known for the complexity of its regulation. The cytosolic sensory kinase DegS does not receive a single predominant input signal like most two-component kinases, instead it integrates a wide array of metabolic inputs that modulate its activity. The phosphorylation state of the response regulator DegU also does not confer a straightforward “on/off” response; it is fine-tuned and at different levels triggers different sub-regulons. Here we describe serine phosphorylation of the DegS sensing domain, which stimulates its kinase activity. We demonstrate that DegS phosphorylation can be carried out by at least two B. subtilis Hanks-type kinases in vitro, and this stimulates the phosphate transfer towards DegU. The consequences of this process were studied in vivo, using phosphomimetic (Ser76Asp) and non-phosphorylatable (Ser76Ala) mutants of DegS. In a number of physiological assays focused on different processes regulated by DegU, DegS S76D phosphomimetic mutant behaved like a strain with intermediate levels of DegU phosphorylation, whereas DegS S76A behaved like a strain with lower levels of DegU phophorylation. These findings suggest a link between DegS phosphorylation at serine 76 and the level of DegU phosphorylation, establishing this post-translational modification as an additional trigger for this two-component system. PMID:21304896

  13. Bacillus subtilis two-component system sensory kinase DegS is regulated by serine phosphorylation in its input domain.

    Directory of Open Access Journals (Sweden)

    Carsten Jers

    Full Text Available Bacillus subtilis two-component system DegS/U is well known for the complexity of its regulation. The cytosolic sensory kinase DegS does not receive a single predominant input signal like most two-component kinases, instead it integrates a wide array of metabolic inputs that modulate its activity. The phosphorylation state of the response regulator DegU also does not confer a straightforward "on/off" response; it is fine-tuned and at different levels triggers different sub-regulons. Here we describe serine phosphorylation of the DegS sensing domain, which stimulates its kinase activity. We demonstrate that DegS phosphorylation can be carried out by at least two B. subtilis Hanks-type kinases in vitro, and this stimulates the phosphate transfer towards DegU. The consequences of this process were studied in vivo, using phosphomimetic (Ser76Asp and non-phosphorylatable (Ser76Ala mutants of DegS. In a number of physiological assays focused on different processes regulated by DegU, DegS S76D phosphomimetic mutant behaved like a strain with intermediate levels of DegU phosphorylation, whereas DegS S76A behaved like a strain with lower levels of DegU phophorylation. These findings suggest a link between DegS phosphorylation at serine 76 and the level of DegU phosphorylation, establishing this post-translational modification as an additional trigger for this two-component system.

  14. Reciprocal Regulation as a Source of Ultrasensitivity in Two-Component Systems with a Bifunctional Sensor Kinase

    Science.gov (United States)

    Straube, Ronny

    2014-01-01

    Two-component signal transduction systems, where the phosphorylation state of a regulator protein is modulated by a sensor kinase, are common in bacteria and other microbes. In many of these systems, the sensor kinase is bifunctional catalyzing both, the phosphorylation and the dephosphorylation of the regulator protein in response to input signals. Previous studies have shown that systems with a bifunctional enzyme can adjust the phosphorylation level of the regulator protein independently of the total protein concentrations – a property known as concentration robustness. Here, I argue that two-component systems with a bifunctional enzyme may also exhibit ultrasensitivity if the input signal reciprocally affects multiple activities of the sensor kinase. To this end, I consider the case where an allosteric effector inhibits autophosphorylation and, concomitantly, activates the enzyme's phosphatase activity, as observed experimentally in the PhoQ/PhoP and NRII/NRI systems. A theoretical analysis reveals two operating regimes under steady state conditions depending on the effector affinity: If the affinity is low the system produces a graded response with respect to input signals and exhibits stimulus-dependent concentration robustness – consistent with previous experiments. In contrast, a high-affinity effector may generate ultrasensitivity by a similar mechanism as phosphorylation-dephosphorylation cycles with distinct converter enzymes. The occurrence of ultrasensitivity requires saturation of the sensor kinase's phosphatase activity, but is restricted to low effector concentrations, which suggests that this mode of operation might be employed for the detection and amplification of low abundant input signals. Interestingly, the same mechanism also applies to covalent modification cycles with a bifunctional converter enzyme, which suggests that reciprocal regulation, as a mechanism to generate ultrasensitivity, is not restricted to two-component systems, but

  15. A novel "four-component" two-component signal transduction mechanism regulates developmental progression in Myxococcus xanthus.

    Science.gov (United States)

    Jagadeesan, Sakthimala; Mann, Petra; Schink, Christian W; Higgs, Penelope I

    2009-08-07

    Histidine-aspartate phosphorelays are employed by two-component signal transduction family proteins to mediate responses to specific signals or stimuli in microorganisms and plants. The RedCDEF proteins constitute a novel signaling system in which four two-component proteins comprising a histidine kinase, a histidine-kinase like protein, and two response regulators function together to regulate progression through the elaborate developmental program of Myxococcus xanthus. A combination of in vivo phenotypic analyses of in-frame deletions and non-functional point mutations in each gene as well as in vitro autophosphorylation and phosphotransfer analyses of recombinant proteins indicate that the RedC histidine kinase protein autophosphorylates and donates a phosphoryl group to the single domain response regulator, RedF, to repress progression through the developmental program. To relieve this developmental repression, RedC instead phosphorylates RedD, a dual receiver response regulator protein. Surprisingly, RedD transfers the phosphoryl group to the histidine kinase-like protein RedE, which itself appears to be incapable of autophosphorylation. Phosphorylation of RedE may render RedE accessible to RedF, where it removes the phosphoryl group from RedF-P, which is otherwise an unusually stable phosphoprotein. These analyses reveal a novel "four-component" signaling mechanism that has probably arisen to temporally coordinate signals controlling the developmental program in M. xanthus. The RedCDEF signaling system provides an important example of how the inherent plasticity and modularity of the basic two-component signaling domains comprise a highly adaptable framework well suited to expansion into complex signaling mechanisms.

  16. Identification of a second two-component signal transduction system that controls fosfomycin tolerance and glycerol-3-phosphate uptake.

    Science.gov (United States)

    Kurabayashi, Kumiko; Hirakawa, Yuko; Tanimoto, Koichi; Tomita, Haruyoshi; Hirakawa, Hidetada

    2015-03-01

    Particular interest in fosfomycin has resurfaced because it is a highly beneficial antibiotic for the treatment of refractory infectious diseases caused by pathogens that are resistant to other commonly used antibiotics. The biological cost to cells of resistance to fosfomycin because of chromosomal mutation is high. We previously found that a bacterial two-component system, CpxAR, induces fosfomycin tolerance in enterohemorrhagic Escherichia coli (EHEC) O157:H7. This mechanism does not rely on irreversible genetic modification and allows EHEC to relieve the fitness burden that results from fosfomycin resistance in the absence of fosfomycin. Here we show that another two-component system, TorSRT, which was originally characterized as a regulatory system for anaerobic respiration utilizing trimethylamine-N-oxide (TMAO), also induces fosfomycin tolerance. Activation of the Tor regulatory pathway by overexpression of torR, which encodes the response regulator, or addition of TMAO increased fosfomycin tolerance in EHEC. We also show that phosphorylated TorR directly represses the expression of glpT, a gene that encodes a symporter of fosfomycin and glycerol-3-phosphate, and activation of the TorR protein results in the reduced uptake of fosfomycin by cells. However, cells in which the Tor pathway was activated had an impaired growth phenotype when cultured with glycerol-3-phosphate as a carbon substrate. These observations suggest that the TorSRT pathway is the second two-component system to reversibly control fosfomycin tolerance and glycerol-3-phosphate uptake in EHEC, and this may be beneficial for bacteria by alleviating the biological cost. We expect that this mechanism could be a potential target to enhance the utility of fosfomycin as chemotherapy against multidrug-resistant pathogens. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  17. Reciprocal regulation as a source of ultrasensitivity in two-component systems with a bifunctional sensor kinase.

    Directory of Open Access Journals (Sweden)

    Ronny Straube

    2014-05-01

    Full Text Available Two-component signal transduction systems, where the phosphorylation state of a regulator protein is modulated by a sensor kinase, are common in bacteria and other microbes. In many of these systems, the sensor kinase is bifunctional catalyzing both, the phosphorylation and the dephosphorylation of the regulator protein in response to input signals. Previous studies have shown that systems with a bifunctional enzyme can adjust the phosphorylation level of the regulator protein independently of the total protein concentrations--a property known as concentration robustness. Here, I argue that two-component systems with a bifunctional enzyme may also exhibit ultrasensitivity if the input signal reciprocally affects multiple activities of the sensor kinase. To this end, I consider the case where an allosteric effector inhibits autophosphorylation and, concomitantly, activates the enzyme's phosphatase activity, as observed experimentally in the PhoQ/PhoP and NRII/NRI systems. A theoretical analysis reveals two operating regimes under steady state conditions depending on the effector affinity: If the affinity is low the system produces a graded response with respect to input signals and exhibits stimulus-dependent concentration robustness--consistent with previous experiments. In contrast, a high-affinity effector may generate ultrasensitivity by a similar mechanism as phosphorylation-dephosphorylation cycles with distinct converter enzymes. The occurrence of ultrasensitivity requires saturation of the sensor kinase's phosphatase activity, but is restricted to low effector concentrations, which suggests that this mode of operation might be employed for the detection and amplification of low abundant input signals. Interestingly, the same mechanism also applies to covalent modification cycles with a bifunctional converter enzyme, which suggests that reciprocal regulation, as a mechanism to generate ultrasensitivity, is not restricted to two-component

  18. Reciprocal regulation as a source of ultrasensitivity in two-component systems with a bifunctional sensor kinase.

    Directory of Open Access Journals (Sweden)

    Ronny Straube

    2014-05-01

    Full Text Available Two-component signal transduction systems, where the phosphorylation state of a regulator protein is modulated by a sensor kinase, are common in bacteria and other microbes. In many of these systems, the sensor kinase is bifunctional catalyzing both, the phosphorylation and the dephosphorylation of the regulator protein in response to input signals. Previous studies have shown that systems with a bifunctional enzyme can adjust the phosphorylation level of the regulator protein independently of the total protein concentrations--a property known as concentration robustness. Here, I argue that two-component systems with a bifunctional enzyme may also exhibit ultrasensitivity if the input signal reciprocally affects multiple activities of the sensor kinase. To this end, I consider the case where an allosteric effector inhibits autophosphorylation and, concomitantly, activates the enzyme's phosphatase activity, as observed experimentally in the PhoQ/PhoP and NRII/NRI systems. A theoretical analysis reveals two operating regimes under steady state conditions depending on the effector affinity: If the affinity is low the system produces a graded response with respect to input signals and exhibits stimulus-dependent concentration robustness--consistent with previous experiments. In contrast, a high-affinity effector may generate ultrasensitivity by a similar mechanism as phosphorylation-dephosphorylation cycles with distinct converter enzymes. The occurrence of ultrasensitivity requires saturation of the sensor kinase's phosphatase activity, but is restricted to low effector concentrations, which suggests that this mode of operation might be employed for the detection and amplification of low abundant input signals. Interestingly, the same mechanism also applies to covalent modification cycles with a bifunctional converter enzyme, which suggests that reciprocal regulation, as a mechanism to generate ultrasensitivity, is not restricted to two-component

  19. Raman-shifted eye-safe aerosol lidar (REAL) in 2010: instrument status and two-component wind measurements

    Science.gov (United States)

    Mayor, Shane D.

    2010-10-01

    This paper and corresponding seminar given on 20 September 2010 at the 16th International School for Quantum Electronics in Nesebar, Bulgaria, will describe the key hardware aspects of the Raman-shifted Eye-safe Aerosol Lidar (REAL) and recent advances in extracting two-component wind vector fields from the images it produces. The REAL is an eye-safe, ground-based, scanning, elastic aerosol backscatter lidar operating at 1.54 microns wavelength. Operation at this wavelength offers several advantages compared to other laser wavelengths including: (1) maximum eye-safety, (2) invisible beam, (3) superior performance photodetectors compared with those used at longer wavelengths, (4) low atmospheric molecular scattering when compared with operation at shorter wavelengths, (5) good aerosol backscattering, (6) atmospheric transparency, and (7) availability of optical and photonic components used in the modern telecommunations industry. A key issue for creating a high-performance direct-detection lidar at 1.5 microns is the use of InGaAs avalanche photodetectors that have active areas of at most 200 microns in diameter. The small active area imposes a maximum limitation on the field-of-view of the receiver (about 0.54 mrad full-angle for REAL). As a result, a key requirement is a transmitter that can produce a pulsed (>10 Hz) beam with low divergence (150 mJ), and short pulse-duration (lidars in that two components of motion can be sensed. (Doppler lidars can sense only the radial component of flow.) Two-component velocity estimation is done by computing two-dimensional cross-correlation functions (CCFs) and noting the displacement of the peak of the CCF with respect to the origin. Motion vectors derived from this method are compared with coincident sonic anemometer measurements at 1.6 km range. Preliminary results indicate the method performs best when the atmosphere is stable with light winds.

  20. Matter-Wave Solitons in Two-Component Bose-Einstein Condensates with Tunable Interactions and Time Varying Potential

    Institute of Scientific and Technical Information of China (English)

    宣恒农; 左苗

    2011-01-01

    We present three families of exact matter-wave soliton solutions for an effective one-dimension two- component Bose-Einstein condensates (BECs) with tunable interactions, harmonic potential and gain or loss term. We investigate the dynamics of bright-bright solitons, bright-dark solitons and dark-dark solitons for the time-dependent expulsive harmonic trap potential, periodically modulated harmonic trap potential, and kinklike modulated harmonic trap potential. Through the Feshbach resonance, these dynamics can be realized in experiments by suitable control of time-dependent trap parameters, atomic interactions, and interaction with thermal cloud.

  1. The periplasmic regulator ExoR inhibits ExoS/ChvI two-component signaling in Sinorhizobium meliloti

    OpenAIRE

    Chen, Esther J.; Sabio, Erich A.; Long, Sharon R

    2008-01-01

    Sinorhizobium meliloti requires ExoS/ChvI two-component signaling to establish a nitrogen-fixing symbiosis with legume hosts. The importance of ExoS/ChvI signaling in microbe-host interactions is underscored by the requirement of ExoS/ChvI orthologs for virulence of the related α-proteobacteria Agrobacterium tumefaciens and Brucella abortus. In S. meliloti, ExoS/ChvI is a key regulator of gene expression for exopolysaccharide synthesis, biofilm formation, motility, nutrient utilization, and f...

  2. Regulatory Role of the MisR/S Two-Component System in Hemoglobin Utilization in Neisseria meningitidis▿ †

    OpenAIRE

    2009-01-01

    Outer membrane iron receptors are some of the major surface entities that are critical for meningococcal pathogenesis. The gene encoding the meningococcal hemoglobin receptor, HmbR, is both independently transcribed and transcriptionally linked to the upstream gene hemO, which encodes a heme oxygenase. The MisR/S two-component system was previously determined to regulate hmbR transcription, and its hemO and hmbR regulatory mechanisms were characterized further here. The expression of hemO and...

  3. Classification of the ground states and topological defects in a rotating two-component Bose-Einstein condensate

    Energy Technology Data Exchange (ETDEWEB)

    Mason, Peter [Laboratoire de Physique Statistique, Ecole Normale Superieure, UPMC Paris 06, Universite Paris Diderot, CNRS, 24 rue Lhomond, F-75005 Paris (France); Institut Jean Le Rond D' Alembert, UMR 7190 CNRS-UPMC, 4 place Jussieu, F-75005 Paris (France); Aftalion, Amandine [CNRS and Universite Versailles-Saint-Quentin-en-Yvelines, Laboratoire de Mathematiques de Versailles, CNRS UMR 8100, 45 avenue des Etats-Unis, F-78035 Versailles Cedex (France)

    2011-09-15

    We classify the ground states and topological defects of a rotating two-component condensate when varying several parameters: the intracomponent coupling strengths, the intercomponent coupling strength, and the particle numbers. No restriction is placed on the masses or trapping frequencies of the individual components. We present numerical phase diagrams which show the boundaries between the regions of coexistence, spatial separation, and symmetry breaking. Defects such as triangular coreless vortex lattices, square coreless vortex lattices, and giant skyrmions are classified. Various aspects of the phase diagrams are analytically justified thanks to a nonlinear {sigma} model that describes the condensate in terms of the total density and a pseudo-spin representation.

  4. Kink-Like Wave and Compacton-Like Wave Solutions for a Two-Component Fornberg-Whitham Equation

    Directory of Open Access Journals (Sweden)

    Shaoyong Li

    2014-01-01

    systems, we study a two-component Fornberg-Whitham equation. Two types of bounded traveling wave solutions are found, that is, the kink-like wave and compacton-like wave solutions. The planar graphs of these solutions are simulated by using software Mathematica; meanwhile, two new phenomena are revealed; that is, the periodic wave solution can become the kink-like wave or compacton-like wave solution under some conditions, respectively. Exact implicit or parameter expressions of these solutions are given.

  5. Engineered microbial biosensors based on bacterial two-component systems as synthetic biotechnology platforms in bioremediation and biorefinery.

    Science.gov (United States)

    Ravikumar, Sambandam; Baylon, Mary Grace; Park, Si Jae; Choi, Jong-Il

    2017-04-14

    Two-component regulatory systems (TCRSs) mediate cellular response by coupling sensing and regulatory mechanisms. TCRSs are comprised of a histidine kinase (HK), which serves as a sensor, and a response regulator, which regulates expression of the effector gene after being phosphorylated by HK. Using these attributes, bacterial TCRSs can be engineered to design microbial systems for different applications. This review focuses on the current advances in TCRS-based biosensors and on the design of microbial systems for bioremediation and their potential application in biorefinery.

  6. Three-body recombination of two-component cold atomic gases into deep dimers in an optical model

    DEFF Research Database (Denmark)

    Mikkelsen, Mathias; Jensen, A. S.; Fedorov, D. V.

    2015-01-01

    We consider three-body recombination into deep dimers in a mass-imbalanced two-component atomic gas. We use an optical model where a phenomenological imaginary potential is added to the lowest adiabatic hyper-spherical potential. The consequent imaginary part of the energy eigenvalue corresponds...... to the decay rate or recombination probability of the three-body system. The method is formulated in details and the relevant qualitative features are discussed as functions of scattering lengths and masses. We use zero-range model in analyses of recent recombination data. The dominating scattering length...

  7. SELF-SIMILAR SOLUTIONS AND BLOW-UP PHENOMENA FOR A TWO-COMPONENT SHALLOW WATER SYSTEM

    Institute of Scientific and Technical Information of China (English)

    Shouming ZHOU; Chunlai MU; Liangchen WANG

    2013-01-01

    In this article,we consider a two-component nonlinear shallow water system,which includes the famous 2-component Camassa-Holm and Degasperis-Procesi equations as special cases.The local well-posedess for this equations is established.Some sufficient conditions for blow-up of the solutions in finite time are given.Moreover,by separation method,the self-similar solutions for the nonlinear shallow water equations are obtained,and which local or global behavior can be determined by the corresponding Emden equation.

  8. Novel two-component regulatory systems play a role in biofilm formation of Lactobacillus reuteri rodent isolate 100-23.

    Science.gov (United States)

    Su, Marcia Shu-Wei; Gänzle, Michael G

    2014-04-01

    This study characterized the two-component regulatory systems encoded by bfrKRT and cemAKR, and assessed their influence on biofilm formation by Lactobacillus reuteri 100-23. A method for deletion of multiple genes was employed to disrupt the genetic loci of two-component systems. The operons bfrKRT and cemAKR showed complementary organization. Genes bfrKRT encode a histidine kinase, a response regulator and an ATP-binding cassette-type transporter with a bacteriocin-processing peptidase domain, respectively. Genes cemAKR code for a signal peptide, a histidine kinase and a response regulator, respectively. Deletion of single or multiple genes in the operons bfrKRT and cemAKR did not affect cell morphology, growth or the sensitivity to various stressors. However, gene disruption affected biofilm formation; this effect was dependent on the carbon source. Deletion of bfrK or cemA increased sucrose-dependent biofilm formation in vitro. Glucose-dependent biofilm formation was particularly increased by deletion of cemK. The expression of cemK and cemR was altered by deletion of bfrK, indicating cross-talk between these two regulatory systems. These results may contribute to our understanding of the genetic factors related to the biofilm formation and competitiveness of L. reuteri in intestinal ecosystems.

  9. Analysis of the BarA/UvrY two-component system in Shewanella oneidensis MR-1.

    Directory of Open Access Journals (Sweden)

    Lucas Binnenkade

    Full Text Available The BarA/UvrY two-component system is well conserved in species of the γ-proteobacteria and regulates numerous processes predominantly by controlling the expression of a subset of noncoding small RNAs. In this study, we identified and characterized the BarA/UvrY two-component system in the gammaproteobacterium Shewanella oneidensis MR-1. Functional interaction of sensor kinase BarA and the cognate response regulator UvrY was indicated by in vitro phosphotransfer studies. The expression of two predicted small regulatory RNAs (sRNAs, CsrB1 and CsrB2, was dependent on UvrY. Transcriptomic analysis by microarrays revealed that UvrY is a global regulator and directly or indirectly affects transcript levels of more than 200 genes in S. oneidensis. Among these are genes encoding key enzymes of central carbon metabolism such as ackA, aceAB, and pflAB. As predicted of a signal transduction pathway that controls aspects of central metabolism, mutants lacking UvrY reach a significantly higher OD than the wild type during aerobic growth on N-acetylglucosamine (NAG while under anaerobic conditions the mutant grew more slowly. A shorter lag phase occurred with lactate as carbon source. In contrast, significant growth phenotypes were absent in complex medium. Based on these studies we hypothesize that, in S. oneidensis MR-1, the global BarA/UvrY/Csr regulatory pathway is involved in central carbon metabolism processes.

  10. Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks.

    Directory of Open Access Journals (Sweden)

    Andrea Procaccini

    Full Text Available Predictive understanding of the myriads of signal transduction pathways in a cell is an outstanding challenge of systems biology. Such pathways are primarily mediated by specific but transient protein-protein interactions, which are difficult to study experimentally. In this study, we dissect the specificity of protein-protein interactions governing two-component signaling (TCS systems ubiquitously used in bacteria. Exploiting the large number of sequenced bacterial genomes and an operon structure which packages many pairs of interacting TCS proteins together, we developed a computational approach to extract a molecular interaction code capturing the preferences of a small but critical number of directly interacting residue pairs. This code is found to reflect physical interaction mechanisms, with the strongest signal coming from charged amino acids. It is used to predict the specificity of TCS interaction: Our results compare favorably to most available experimental results, including the prediction of 7 (out of 8 known interaction partners of orphan signaling proteins in Caulobacter crescentus. Surveying among the available bacterial genomes, our results suggest 15∼25% of the TCS proteins could participate in out-of-operon "crosstalks". Additionally, we predict clusters of crosstalking candidates, expanding from the anecdotally known examples in model organisms. The tools and results presented here can be used to guide experimental studies towards a system-level understanding of two-component signaling.

  11. Special Relativistic Magnetohydrodynamic Simulation of a Two-component Outflow Powered by Magnetic Explosion on Compact Stars

    Science.gov (United States)

    Matsumoto, Jin; Masada, Youhei; Asano, Eiji; Shibata, Kazunari

    2011-05-01

    The nonlinear dynamics of outflows driven by magnetic explosion on the surface of a compact star is investigated through special relativistic magnetohydrodynamic simulations. We adopt, as the initial equilibrium state, a spherical stellar object embedded in hydrostatic plasma which has a density ρ(r) vprop r -α and is threaded by a dipole magnetic field. The injection of magnetic energy at the surface of a compact star breaks the equilibrium and triggers a two-component outflow. At the early evolutionary stage, the magnetic pressure increases rapidly around the stellar surface, initiating a magnetically driven outflow. A strong forward shock driven outflow is then excited. The expansion velocity of the magnetically driven outflow is characterized by the Alfvén velocity on the stellar surface and follows a simple scaling relation v mag vprop v A 1/2. When the initial density profile declines steeply with radius, the strong shock is accelerated self-similarly to relativistic velocity ahead of the magnetically driven component. We find that it evolves according to a self-similar relation Γsh vprop r sh, where Γsh is the Lorentz factor of the plasma measured at the shock surface r sh. A purely hydrodynamic process would be responsible for the acceleration mechanism of the shock driven outflow. Our two-component outflow model, which is the natural outcome of the magnetic explosion, can provide a better understanding of the magnetic active phenomena on various magnetized compact stars.

  12. Origin and evolution of two-component debris discs and an application to the q$^1$ Eridani system

    CERN Document Server

    Schüppler, Christian; Löhne, Torsten; Booth, Mark; Kirchschlager, Florian; Wolf, Sebastian

    2016-01-01

    Many debris discs reveal a two-component structure, with an outer Kuiper-belt analogue and a warm inner component whose origin is still a matter of debate. One possibility is that warm emission stems from an "asteroid belt" closer in to the star. We consider a scenario in which a set of giant planets is formed in an initially extended planetesimal disc. These planets carve a broad gap around their orbits, splitting up the disc into the outer and the inner belts. After the gas dispersal, both belts undergo collisional evolution in a steady-state regime. This scenario is explored with detailed collisional simulations involving realistic physics to describe a long-term collisional depletion of the two-component disc. We find that the inner disc may be able to retain larger amounts of material at older ages than thought before on the basis of simplified analytic models. We show that the proposed scenario is consistent with a suite of thermal emission and scattered light observational data for a bright two-tempera...

  13. Evaluation of the operational parameters for NBI-driven fusion in low-gain tokamaks with two-component plasma

    Science.gov (United States)

    Chirkov, A. Yu.

    2015-09-01

    Low gain (Q ~ 1) fusion plasma systems are of interest for concepts of fusion-fission hybrid reactors. Operational regimes of large modern tokamaks are close to Q  ≈  1. Therefore, they can be considered as prototypes of neutron sources for fusion-fission hybrids. Powerful neutral beam injection (NBI) can support the essential population of fast particles compared with the Maxwellial population. In such two-component plasma, fusion reaction rate is higher than for Maxwellian plasma. Increased reaction rate allows the development of relatively small-size and relatively inexpensive neutron sources. Possible operating regimes of the NBI-heated tokamak neutron source are discussed. In a relatively compact device, the predictions of physics of two-component fusion plasma have some volatility that causes taking into account variations of the operational parameters. Consequent parameter ranges are studied. The feasibility of regimes with Q  ≈  1 is shown for the relatively small and low-power system. The effect of NBI fraction in total heating power is analyzed.

  14. Vortices in a rotating two-component Bose–Einstein condensate with tunable interactions and harmonic potential

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Xiao-Fei, E-mail: xfzhang@ntsc.ac.cn [Key Laboratory of Time and Frequency Primary Standards, National Time Service Center, Chinese Academy of Sciences, Xi’an 710600 (China); Du, Zhi-Jing [Key Laboratory of Time and Frequency Primary Standards, National Time Service Center, Chinese Academy of Sciences, Xi’an 710600 (China); Tan, Ren-Bing [Department of Physics, School of Mathematics and Physics, Chongqing University of Science and Technology, Chongqing 401331 (China); Dong, Rui-Fang; Chang, Hong; Zhang, Shou-Gang [Key Laboratory of Time and Frequency Primary Standards, National Time Service Center, Chinese Academy of Sciences, Xi’an 710600 (China)

    2014-07-15

    We consider a pair of coupled nonlinear Schrödinger equations modeling a rotating two-component Bose–Einstein condensate with tunable interactions and harmonic potential, with emphasis on the structure of vortex states by varying the strength of inter-component interaction, rotational frequency, and the aspect ratio of the harmonic potential. Our results show that the inter-component interaction greatly enhances the effect of rotation. For the case of isotropic harmonic potential and small inter-component interaction, the initial vortex structure remains unchanged. As the ratio of inter- to intra-component interactions increases, each component undergoes a transition from a vortex lattice (vortex line) in an isotropic (anisotropic) harmonic potential to an alternatively arranged stripe pattern, and eventually to the interwoven “serpentine” vortex sheets. Moreover, in the case of anisotropic harmonic potential the system can develop to a rotating droplet structure. -- Highlights: •Different vortex structures are obtained within the full parameter space. •Effects of system parameters on the ground state structure are discussed. •Phase transition between different vortex structures is also examined. •Present one possible way to obtain the rotating droplet structure. •Provide many possibilities to manipulate vortex in two-component BEC.

  15. Two-Component Regulatory Systems – implication in the quorum sensing mechanisms and bacteriocin production in lactic acid bacteria

    Directory of Open Access Journals (Sweden)

    Lia–Mara Ditu

    2014-08-01

    Full Text Available For lactic acid bacteria, the mechanisms of quorum sensing and response are mediated by peptides or pheromones that interfere with the synthesis of antimicrobial peptides (AMP called bacteriocins, when these molecules reach a certain critical level of concentration. Generally, the synthesis and activity of pheromones is adjusted by means of a two-component regulatory system. The observation that some microorganisms, in particular lactic acid bacteria, produce bacteriocins according to the cell density, has led to the discovery of the involvement of QS mechanisms in the synthesis of these peptides. Bacteriocins synthesis is inducible, the process requiring the extracellular accumulation of peptides that functions as chemical messengers activators of bacteriocins synthesis. This minireview presents the molecular architecture and functions of two-component regulatory systems and ABC transporters implicated in the synthesis and secretion of nisin, one of the most studied bacteriocin. The elucidation of the intimate mechanisms of bacteriocins synthesis is equally of biotechnological and medical importance, opening interesting perspectives for the development of improved technologies for the production of bacteriocins with good yields, and also, for increasing the beneficial anti-infective roles of probiotic bacteria when administered in vivo.

  16. Stochastic kinetic model of two component system signalling reveals all-or-none, graded and mixed mode stochastic switching responses.

    Science.gov (United States)

    Kierzek, Andrzej M; Zhou, Lu; Wanner, Barry L

    2010-03-01

    Two-component systems (TCSs) are prevalent signal transduction systems in bacteria that control innumerable adaptive responses to environmental cues and host-pathogen interactions. We constructed a detailed stochastic kinetic model of two component signalling based on published data. Our model has been validated with flow cytometry data and used to examine reporter gene expression in response to extracellular signal strength. The model shows that, depending on the actual kinetic parameters, TCSs exhibit all-or-none, graded or mixed mode responses. In accordance with other studies, positively autoregulated TCSs exhibit all-or-none responses. Unexpectedly, our model revealed that TCSs lacking a positive feedback loop exhibit not only graded but also mixed mode responses, in which variation of the signal strength alters the level of gene expression in induced cells while the regulated gene continues to be expressed at the basal level in a substantial fraction of cells. The graded response of the TCS changes to mixed mode response by an increase of the translation initiation rate of the histidine kinase. Thus, a TCS is an evolvable design pattern capable of implementing deterministic regulation and stochastic switches associated with both graded and threshold responses. This has implications for understanding the emergence of population diversity in pathogenic bacteria and the design of genetic circuits in synthetic biology applications. The model is available in systems biology markup language (SBML) and systems biology graphical notation (SBGN) formats and can be used as a component of large-scale biochemical reaction network models.

  17. Evolutionary analysis and lateral gene transfer of two-component regulatory systems associated with heavy-metal tolerance in bacteria.

    Science.gov (United States)

    Bouzat, Juan L; Hoostal, Matthew J

    2013-05-01

    Microorganisms have adapted intricate signal transduction mechanisms to coordinate tolerance to toxic levels of metals, including two-component regulatory systems (TCRS). In particular, both cop and czc operons are regulated by TCRS; the cop operon plays a key role in bacterial tolerance to copper, whereas the czc operon is involved in the efflux of cadmium, zinc, and cobalt from the cell. Although the molecular physiology of heavy metal tolerance genes has been extensively studied, their evolutionary relationships are not well-understood. Phylogenetic relationships among heavy-metal efflux proteins and their corresponding two-component regulatory proteins revealed orthologous and paralogous relationships from species divergences and ancient gene duplications. The presence of heavy metal tolerance genes on bacterial plasmids suggests these genes may be prone to spread through horizontal gene transfer. Phylogenetic inferences revealed nine potential examples of lateral gene transfer associated with metal efflux proteins and two examples for regulatory proteins. Notably, four of the examples suggest lateral transfer across major evolutionary domains. In most cases, differences in GC content in metal tolerance genes and their corresponding host genomes confirmed lateral gene transfer events. Three-dimensional protein structures predicted for the response regulators encoded by cop and czc operons showed a high degree of structural similarity with other known proteins involved in TCRS signal transduction, which suggests common evolutionary origins of functional phenotypes and similar mechanisms of action for these response regulators.

  18. An Overview of Two-Component Signal Transduction Systems Implicated in Extra-Intestinal Pathogenic E. coli Infections

    Directory of Open Access Journals (Sweden)

    Erin J. Breland

    2017-05-01

    Full Text Available Extra-intestinal pathogenic E. coli (ExPEC infections are common in mammals and birds. The predominant ExPEC types are avian pathogenic E. coli (APEC, neonatal meningitis causing E. coli/meningitis associated E. coli (NMEC/MAEC, and uropathogenic E. coli (UPEC. Many reviews have described current knowledge on ExPEC infection strategies and virulence factors, especially for UPEC. However, surprisingly little has been reported on the regulatory modules that have been identified as critical in ExPEC pathogenesis. Two-component systems (TCSs comprise the predominant method by which bacteria respond to changing environments and play significant roles in modulating bacterial fitness in diverse niches. Recent studies have highlighted the potential of manipulating signal transduction systems as a means to chemically re-wire bacterial pathogens, thereby reducing selective pressure and avoiding the emergence of antibiotic resistance. This review begins by providing a brief introduction to characterized infection strategies and common virulence factors among APEC, NMEC, and UPEC and continues with a comprehensive overview of two-component signal transduction networks that have been shown to influence ExPEC pathogenesis.

  19. An Overview of Two-Component Signal Transduction Systems Implicated in Extra-Intestinal Pathogenic E. coli Infections.

    Science.gov (United States)

    Breland, Erin J; Eberly, Allison R; Hadjifrangiskou, Maria

    2017-01-01

    Extra-intestinal pathogenic E. coli (ExPEC) infections are common in mammals and birds. The predominant ExPEC types are avian pathogenic E. coli (APEC), neonatal meningitis causing E. coli/meningitis associated E. coli (NMEC/MAEC), and uropathogenic E. coli (UPEC). Many reviews have described current knowledge on ExPEC infection strategies and virulence factors, especially for UPEC. However, surprisingly little has been reported on the regulatory modules that have been identified as critical in ExPEC pathogenesis. Two-component systems (TCSs) comprise the predominant method by which bacteria respond to changing environments and play significant roles in modulating bacterial fitness in diverse niches. Recent studies have highlighted the potential of manipulating signal transduction systems as a means to chemically re-wire bacterial pathogens, thereby reducing selective pressure and avoiding the emergence of antibiotic resistance. This review begins by providing a brief introduction to characterized infection strategies and common virulence factors among APEC, NMEC, and UPEC and continues with a comprehensive overview of two-component signal transduction networks that have been shown to influence ExPEC pathogenesis.

  20. Characterization of the Arc two-component signal transduction system of the capnophilic rumen bacterium Mannheimia succiniciproducens.

    Science.gov (United States)

    Jung, Won Seok; Jung, Young Ryul; Oh, Doo-Byoung; Kang, Hyun Ah; Lee, Sang Yup; Chavez-Canales, Maria; Georgellis, Dimitris; Kwon, Ohsuk

    2008-07-01

    The ArcB/A two-component signal transduction system of Escherichia coli modulates the expression of numerous operons in response to redox conditions of growth. We demonstrate that the putative arcA and arcB genes of Mannheimia succiniciproducens MBEL55E, a capnophilic (CO2-loving) rumen bacterium, encode functional proteins that specify a two-component system. The Arc proteins of the two bacterial species sufficiently resemble each other that they can participate in heterologous transphosphorylation in vitro, and the arcA and arcB genes of M. succiniciproducens confer toluidine blue resistance to E. coli arcA and arcB mutants. However, neither the quinone analogs (ubiquinone 0 and menadione) nor the cytosolic effectors (d-lactate, acetate, and pyruvate) affect the net phosphorylation of M. succiniciproducens ArcB. Our results indicate that different types of signaling molecules and distinct modes of kinase regulation are used by the ArcB proteins of E. coli and M. succiniciproducens.

  1. Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system.

    Science.gov (United States)

    Lynch, Jonathan B; Sonnenburg, Justin L

    2012-08-01

    Bacteroides is a dominant genus within the intestinal microbiota of healthy humans. Key adaptations of the Bacteroides to the dynamic intestinal ecosystem include a diverse repertoire of genes involved in sensing and processing numerous diet- and host-derived polysaccharides. One such adaptation is the carbohydrate-sensing hybrid two-component system (HTCS) family of signalling sensors, which has been widely expanded within the Bacteroides. Using Bacteroides thetaiotaomicron as a model, we have created a chimeric HTCS consisting of the well-characterized sensing domain of one HTCS, BT1754, and the regulatory domain of another HTCS, BT0366, to explore the regulatory capabilities of these molecules. We found that the BT0366 regulatory region directly binds to and mediates induction of the adjacent polysaccharide utilization locus (PUL) using whole-genome transcriptional profiling after inducing signalling through our chimeric protein. We also found that BT0366 activation simultaneously leads to repression of distal PULs involved in mucus carbohydrate consumption. These results suggest a novel mechanism by which an HTCS enforces a nutrient hierarchy within the Bacteroides via induction and repression of multiple PULs. Thus, hybrid two-component systems provide a mechanism for prioritizing consumption of carbohydrates through simultaneous binding and regulation of multiple polysaccharide utilization loci. © 2012 Blackwell Publishing Ltd.

  2. Transcriptional regulation of drug efflux genes by EvgAS, a two-component system in Escherichia coli.

    Science.gov (United States)

    Eguchi, Yoko; Oshima, Taku; Mori, Hirotada; Aono, Rikizo; Yamamoto, Kaneyoshi; Ishihama, Akira; Utsumi, Ryutaro

    2003-10-01

    A constitutively active mutant of histidine kinase sensor EvgS was found to confer multi-drug resistance (MDR) to an acrA-deficient Escherichia coli, indicating the relationship between the two-component system EvgAS and the expression of the MDR system. The observed MDR also depended on an outer-membrane channel, TolC. Microarray and S1 mapping assays indicated that, in the presence of this constitutive mutant EvgS, the level of transcription increased for some MDR genes, including the drug efflux genes emrKY, yhiUV, acrAB, mdfA and tolC. Transcription in vitro of emrK increased by the addition of phosphorylated EvgA. Transcription activation of tolC by the activated EvgS was, however, dependent on both EvgAS and PhoPQ (Mg(2+)-responsive two-component system), in agreement with the presence of the binding site (PhoP box) for the regulator PhoP in the tolC promoter region. Transcription in vitro of yhiUV also appears to require an as-yet-unidentified additional transcriptional factor besides EvgA. Taken together we propose that the expression of the MDR system is under a complex regulatory network, including the phosphorylated EvgA serving as the master regulator.

  3. Identification and characterization of the two-component NtrY/NtrX regulatory system in Azospirillum brasilense

    Directory of Open Access Journals (Sweden)

    M.L. Ishida

    2002-06-01

    Full Text Available Two Azospirillum brasilense open reading frames (ORFs exhibited homology with the two-component NtrY/NtrX regulatory system from Azorhizobium caulinodans. These A. brasilense ORFs, located downstream to the nifR3ntrBC operon, were isolated, sequenced and characterized. The present study suggests that ORF1 and ORF2 correspond to the A. brasilense ntrY and ntrX genes, respectively. The amino acid sequences of A. brasilense NtrY and NtrX proteins showed high similarity to sensor/kinase and regulatory proteins, respectively. Analysis of lacZ transcriptional fusions by the ß-galactosidase assay in Escherichia coli ntrC mutants showed that the NtrY/NtrX proteins failed to activate transcription of the nifA promoter of A. brasilense. The ntrYX operon complemented a nifR3ntrBC deletion mutant of A. brasilense for nitrate-dependent growth, suggesting a possible cross-talk between the NtrY/X and NtrB/C sensor/regulator pairs. Our data support the existence of another two-component regulatory system in A. brasilense, the NtrY/NtrX system, probably involved in the regulation of nitrate assimilation.

  4. Regular Bisimple ω2-semigroups

    Institute of Scientific and Technical Information of China (English)

    汪立民; 商宇

    2008-01-01

    @@ The regular semigroups S with an idempotent set Es = {e0,e1,…,en,…} such that e0 > e1 >…> en >… is called a regular ω-semigroup. In [5] Reilly determined the structure of a regular bisimple ω-semigroup as BR(G,θ),which is the classical Bruck-Reilly extension of a group G.

  5. Completely regular fuzzifying topological spaces

    Directory of Open Access Journals (Sweden)

    A. K. Katsaras

    2005-12-01

    Full Text Available Some of the properties of the completely regular fuzzifying topological spaces are investigated. It is shown that a fuzzifying topology τ is completely regular if and only if it is induced by some fuzzy uniformity or equivalently by some fuzzifying proximity. Also, τ is completely regular if and only if it is generated by a family of probabilistic pseudometrics.

  6. On regular rotating black holes

    Science.gov (United States)

    Torres, R.; Fayos, F.

    2017-01-01

    Different proposals for regular rotating black hole spacetimes have appeared recently in the literature. However, a rigorous analysis and proof of the regularity of this kind of spacetimes is still lacking. In this note we analyze rotating Kerr-like black hole spacetimes and find the necessary and sufficient conditions for the regularity of all their second order scalar invariants polynomial in the Riemann tensor. We also show that the regularity is linked to a violation of the weak energy conditions around the core of the rotating black hole.

  7. Constrained and regularized system identification

    Directory of Open Access Journals (Sweden)

    Tor A. Johansen

    1998-04-01

    Full Text Available Prior knowledge can be introduced into system identification problems in terms of constraints on the parameter space, or regularizing penalty functions in a prediction error criterion. The contribution of this work is mainly an extension of the well known FPE (Final Production Error statistic to the case when the system identification problem is constrained and contains a regularization penalty. The FPECR statistic (Final Production Error with Constraints and Regularization is of potential interest as a criterion for selection of both regularization parameters and structural parameters such as order.

  8. On regular rotating black holes

    CERN Document Server

    Torres, Ramon

    2016-01-01

    Different proposals for regular rotating black hole spacetimes have appeared recently in the literature. However, a rigorous analysis and proof of the regularity of this kind of spacetimes is still lacking. In this note we analyze rotating Kerr-like black hole spacetimes and find the necessary and sufficient conditions for the regularity of all their second order scalar invariants polynomial in the Riemann tensor. We also show that the regularity is linked to a violation of the weak energy conditions around the core of the rotating black hole.

  9. On Ideals of Regular Rings

    Institute of Scientific and Technical Information of China (English)

    CHEN Huan Yin; LI Fu An

    2002-01-01

    In this paper, we investigate ideals of regular rings and give several characterizations for an ideal to satisfy the comparability. In addition, it is shown that, if Ⅰ is a minimal two-sided ideal of a regular ring R, then Ⅰ satisfies the comparability if and only if Ⅰ is separative. Furthermore, we prove that, for ideals with stable range one, Roth's problem has an affirmative solution. These extend the corresponding results on unit-regularity and one-sided unit-regularity.

  10. Mutational activation of the AmgRS two-component system in aminoglycoside-resistant Pseudomonas aeruginosa.

    Science.gov (United States)

    Lau, Calvin Ho-Fung; Fraud, Sebastien; Jones, Marcus; Peterson, Scott N; Poole, Keith

    2013-05-01

    The amgRS operon encodes a presumed membrane stress-responsive two-component system linked to intrinsic aminoglycoside resistance in Pseudomonas aeruginosa. Genome sequencing of a lab isolate showing modest pan-aminoglycoside resistance, strain K2979, revealed a number of mutations, including a substitution in amgS that produced an R182C change in the AmgS sensor kinase product of this gene. Introduction of this mutation into an otherwise wild-type strain recapitulated the resistance phenotype, while correcting the mutation in the resistant mutant abrogated the resistant phenotype, confirming that the amgS mutation is responsible for the aminoglycoside resistance of strain K2979. The amgSR182 mutation promoted an AmgR-dependent, 2- to 3-fold increase in expression of the AmgRS target genes htpX and PA5528, mirroring the impact of aminoglycoside exposure of wild-type cells on htpX and PA5528 expression. This suggests that amgSR182 is a gain-of-function mutation that activates AmgS and the AmgRS two-component system in promoting modest resistance to aminoglycosides. Screening of several pan-aminoglycoside-resistant clinical isolates of P. aeruginosa revealed three that showed elevated htpX and PA5528 expression and harbored single amino acid-altering mutations in amgS (V121G or D106N) and no mutations in amgR. Introduction of the amgSV121G mutation into wild-type P. aeruginosa generated a resistance phenotype reminiscent of the amgSR182 mutant and produced a 2- to 3-fold increase in htpX and PA5528 expression, confirming that it, too, is a gain-of-function aminoglycoside resistance-promoting mutation. These results highlight the contribution of amgS mutations and activation of the AmgRS two-component system to acquired aminoglycoside resistance in lab and clinical isolates of P. aeruginosa.

  11. The Vibrio cholerae VprA-VprB two-component system controls virulence through endotoxin modification.

    Science.gov (United States)

    Herrera, Carmen M; Crofts, Alexander A; Henderson, Jeremy C; Pingali, S Cassandra; Davies, Bryan W; Trent, M Stephen

    2014-12-23

    The bacterial cell surface is the first structure the host immune system targets to prevent infection. Cationic antimicrobial peptides of the innate immune system bind to the membrane of Gram-negative pathogens via conserved, surface-exposed lipopolysaccharide (LPS) molecules. We recently reported that modern strains of the global intestinal pathogen Vibrio cholerae modify the anionic lipid A domain of LPS with a novel moiety, amino acids. Remarkably, glycine or diglycine addition to lipid A alters the surface charge of the bacteria to help evade the cationic antimicrobial peptide polymyxin. However, the regulatory mechanisms of lipid A modification in V. cholerae are unknown. Here, we identify a novel two-component system that regulates lipid A glycine modification by responding to important biological cues associated with pathogenesis, including bile, mildly acidic pH, and cationic antimicrobial peptides. The histidine kinase Vc1319 (VprB) and the response regulator Vc1320 (VprA) respond to these signals and are required for the expression of the almEFG operon that encodes the genes essential for glycine modification of lipid A. Importantly, both the newly identified two-component system and the lipid A modification machinery are required for colonization of the mammalian host. This study demonstrates how V. cholerae uses a previously unknown regulatory network, independent of well-studied V. cholerae virulence factors and regulators, to respond to the host environment and cause infection. Vibrio cholerae, the etiological agent of cholera disease, infects millions of people every year. V. cholerae El Tor and classical biotypes have been responsible for all cholera pandemics. The El Tor biotype responsible for the current seventh pandemic has displaced the classical biotype worldwide and is highly resistant to cationic antimicrobial peptides, like polymyxin B. This resistance arises from the attachment of one or two glycine residues to the lipid A domain of

  12. Stochastic simulation of prokaryotic two-component signalling indicates stochasticity-induced active-state locking and growth-rate dependent bistability

    NARCIS (Netherlands)

    K. Wei (Katy); M. Moinat (Maxim); T.R. Maarleveld (Timo); F.J. Bruggeman (Frank)

    2014-01-01

    htmlabstractSignal transduction by prokaryotes almost exclusively relies on two-component systems for sensing and responding to (extracellular) signals. Here, we use stochastic models of two-component systems to better understand the impact of stochasticity on the fidelity and robustness of signal

  13. The Campylobacter jejuni PhosS/PhosR operon represents a non-classical phosphate-sensitive two-component system

    NARCIS (Netherlands)

    Wösten, MM; Parker, Craig T; van Mourik, Andries; Guilhabert, Magalie R; van Dijk, Linda; van Putten, Jos P M

    2006-01-01

    The bacterial pathogen Campylobacter jejuni carries several putative two-component signal transduction systems of unknown function. Here we report that the PhosS (Cj0889) and PhosR (Cj0890) proteins constitute a two-component system that is activated by phosphate limitation. Microarray analysis,

  14. Regularly timed events amid chaos

    Science.gov (United States)

    Blakely, Jonathan N.; Cooper, Roy M.; Corron, Ned J.

    2015-11-01

    We show rigorously that the solutions of a class of chaotic oscillators are characterized by regularly timed events in which the derivative of the solution is instantaneously zero. The perfect regularity of these events is in stark contrast with the well-known unpredictability of chaos. We explore some consequences of these regularly timed events through experiments using chaotic electronic circuits. First, we show that a feedback loop can be implemented to phase lock the regularly timed events to a periodic external signal. In this arrangement the external signal regulates the timing of the chaotic signal but does not strictly lock its phase. That is, phase slips of the chaotic oscillation persist without disturbing timing of the regular events. Second, we couple the regularly timed events of one chaotic oscillator to those of another. A state of synchronization is observed where the oscillators exhibit synchronized regular events while their chaotic amplitudes and phases evolve independently. Finally, we add additional coupling to synchronize the amplitudes, as well, however in the opposite direction illustrating the independence of the amplitudes from the regularly timed events.

  15. Online co-regularized algorithms

    NARCIS (Netherlands)

    Ruijter, T. de; Tsivtsivadze, E.; Heskes, T.

    2012-01-01

    We propose an online co-regularized learning algorithm for classification and regression tasks. We demonstrate that by sequentially co-regularizing prediction functions on unlabeled data points, our algorithm provides improved performance in comparison to supervised methods on several UCI benchmarks

  16. Online co-regularized algorithms

    NARCIS (Netherlands)

    Ruijter, T. de; Tsivtsivadze, E.; Heskes, T.

    2012-01-01

    We propose an online co-regularized learning algorithm for classification and regression tasks. We demonstrate that by sequentially co-regularizing prediction functions on unlabeled data points, our algorithm provides improved performance in comparison to supervised methods on several UCI benchmarks

  17. Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo

    DEFF Research Database (Denmark)

    Jovanovic, Goran; Sheng, Xia; Ale, Angelique;

    2015-01-01

    the functional relevance of the dimerization of a non-orthodox or hybrid histidine kinase along which the phosphorelay takes place has been a subject of debate. We use a combination of molecular and genetic approaches, coupled to mathematical and statistical modelling, to demonstrate that the different possible...... intra- and inter-molecular mechanisms of phosphotransfer are formally non-identifiable in Escherichia coli expressing the ArcB non-orthodox histidine kinase used in anoxic redox control. In order to resolve this issue we further analyse the mathematical model in order to identify discriminatory...... in the histidine kinase. This is the first detailed mechanistic analysis of the molecular processes involved in non-orthodox two-component signalling and our results suggest strongly that dimerization facilitates more discriminatory proof-reading of external signals, via these allosteric reactions, prior to them...

  18. ‘Forcing the issue’ - Aromatic tuning facilitates stimulus-independent modulation of a two-component signaling circuit

    DEFF Research Database (Denmark)

    Nørholm, Morten; von Heijne, Gunnar; Draheim, Roger R.

    2014-01-01

    desirable because particular physiological or developmental processes could be controlled for biotechnological purposes without the need to identify the stimulus itself. Here, we demonstrate that aromatic tuning, i.e., repositioning the aromatic residues commonly found at the cytoplasmic end of the receptor...... receptors were not locked in a single conformation. We also noted that circuits containing aromatically tuned variants became more sensitive to changes in the receptor concentration than their wild-type counterpart, suggesting a new way to study mechanisms underpinning receptor concentration......-dependent robustness. We believe that aromatic tuning has several advantages compared to previous methods aimed at stimulus-independent modulation of receptors and that it will be generally applicable to a wide-range of two-component circuits....

  19. Temperature-controlled structure and kinetics of ripple phases in one- and two-component supported lipid bilayers

    DEFF Research Database (Denmark)

    Kaasgaard, Thomas; Leidy, Chad; Crowe, J.H.

    2003-01-01

    ripples was seen. From height profiles of the AFM images, estimates of the amplitudes of the different ripple phases are reported. To elucidate the processes of ripple formation and disappearance, a ripple-phase DPPC lipid bilayer was taken through the pretransition in the cooling and the heating......Temperature-controlled atomic force microscopy (AFM) has been used to visualize and study the structure and kinetics of ripple phases in one-component dipalmitoylphosphaticlylcholine (DPPC) and two-component dimyristoylphosphatidylcholine-distearoylphosphatidylcholine (DMPC-DSPC) lipid bilayers....... The lipid bilayers are mica-supported double bilayers in which ripple-phase formation occurs in the top bilayer. In one-component DPPC lipid bilayers, the stable and metastable ripple phases were observed. In addition, a third ripple structure with approximately twice the wavelength of the metastable...

  20. Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis

    DEFF Research Database (Denmark)

    Binnewies, Tim Terence; Ussery, David; Lavín, JL

    2010-01-01

    Two-component systems (TCSs) are the predominant bacterial signal transduction mechanisms. Species of the genus Brucella are genetically highly related and differ mainly in mammalian host adaptation and pathogenesis. In this study, TCS proteins encoded in the available genome sequences of Brucella...... species have been identified using bioinformatic methods. All the Brucella species share an identical set of TCS proteins, and the number of TCS proteins in the closely related opportunistic human pathogen Ochrobactrum anthropi was higher than in Brucella species as expected from its lifestyle. O....... anthropi lacks orthologs of the Brucella TCSs NodVW, TceSR and TcfSR, suggesting that these TCS proteins could be necessary for the adaptation of Brucella as an intracellular pathogen. This genomic analysis revealed the presence of a differential distribution of TCS pseudogenes among Brucella species...

  1. Streptococcus rattus strain BHT produces both a class I two-component lantibiotic and a class II bacteriocin.

    Science.gov (United States)

    Hyink, Otto; Balakrishnan, Mayooran; Tagg, John R

    2005-11-15

    Streptococcus rattus strain BHT is a species representative and strong bacteriocin producer. Here we report that S. rattus BHT produces two quite different types of bacteriocin activity, named BHT-A and BHT-B. The two bacteriocins were purified and analysed for activity and by MALDI-TOF mass spectrophotometry. BHT-A was found to be a variant of the two-component lantibiotic, Smb. BHT-B is a non-modified 5195Da peptide with some similarity to the tryptophan-rich Staphylococcus aureus bacteriocin, aureocin A53. Six S. rattus and two S. mutans strains were found to contain both the BHT-A and BHT-B genetic loci.

  2. Two-Component Signal Transduction Systems of Desulfovibrio Vulgaris: Structural and Phylogenetic Analysis and Deduction of Putative Cognate Pairs

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Weiwen; Culley, David E.; Wu, Gang; Brockman, Fred J.

    2006-01-20

    ABSTRACT-Two-component signal transduction systems (TCSTS) composed of sensory histidine kinases (HK) and response regulators (RR), constitute a key element of the mechanism by which bacteria sense and respond to changes in environments. A large number of TCSTSs including 59 putative HKs and 55 RRs were identified from the Desulfovibrio vulgaris genome, indicating their important roles in regulation of cellular metabolism. In this study, the structural and phylogenetic analysis of all putative TCSTSs in D. vulgaris was performed. The results showed D. vulgaris contained an unexpectedly large number of hybrid-type HKs, implying that multiple-step phosphorelay may be a common signal transduction mechanism in D. vulgaris. Most TCSTS components of D. vulgaris were found clustered into several subfamilies previously recognized in other bacteria and extensive co-evolution between D. vulgaris HKs and RRs was observed, suggesting that the concordance of HKs and RRs in cognate phylogenetic groups could be indicative of cognate TCSTSs...

  3. Characterization of the yehUT two-component regulatory system of Salmonella enterica Serovar Typhi and Typhimurium.

    Science.gov (United States)

    Wong, Vanessa K; Pickard, Derek J; Barquist, Lars; Sivaraman, Karthikeyan; Page, Andrew J; Hart, Peter J; Arends, Mark J; Holt, Kathryn E; Kane, Leanne; Mottram, Lynda F; Ellison, Louise; Bautista, Ruben; McGee, Chris J; Kay, Sally J; Wileman, Thomas M; Kenney, Linda J; MacLennan, Calman A; Kingsley, Robert A; Dougan, Gordon

    2013-01-01

    Proteins exhibiting hyper-variable sequences within a bacterial pathogen may be associated with host adaptation. Several lineages of the monophyletic pathogen Salmonella enterica serovar Typhi (S. Typhi) have accumulated non-synonymous mutations in the putative two-component regulatory system yehUT. Consequently we evaluated the function of yehUT in S. Typhi BRD948 and S. Typhimurium ST4/74. Transcriptome analysis identified the cstA gene, encoding a carbon starvation protein as the predominantly yehUT regulated gene in both these serovars. Deletion of yehUT had no detectable effect on the ability of these mutant Salmonella to invade cultured epithelial cells (S. Typhi and S. Typhimurium) or induce colitis in a murine model (S. Typhimurium only). Growth, metabolic and antimicrobial susceptibility tests identified no obvious influences of yehUT on these phenotypes.

  4. Investigation of Self-Assembly of Two-Component Organogel System Based on Trigonal Acids and Aminobenzothiazole Derivatives

    Directory of Open Access Journals (Sweden)

    Youbo Di

    2013-01-01

    Full Text Available We reported here the gelation behaviors of two-component organogel system based on different acids and aminobenzothiazole derivatives in various organic solvents. Their gelation behaviors in 20 solvents were tested as new organic gelators. It was shown that the molecular skeletons and substituted groups in these compounds played a crucial role in the gelation behavior of the mixtures. Only the binary mixture of 2-aminobenzothiazole and trigonal 1,3,5-benzenetricarboxylic acid with aromatic core could form organogels in ethanol and acetone. Morphological observations reveal that the microstructures of both xerogels showed similar wrinkle-shaped domains composed of sheet-like aggregates with many holes. Spectral studies reveal the hydrogen bonding interaction between the amide of the gelator and lamellar-like structure of the aggregates in both gels. The present investigation is a perspective to provide new clues for the design of new nanomaterials and functional textile materials with special microstructures.

  5. Temperature-controlled structure and kinetics of ripple phases in one- and two-component supported lipid bilayers

    DEFF Research Database (Denmark)

    Kaasgaard, Thomas; Leidy, Chad; Crowe, J.H.

    2003-01-01

    ripples was seen. From height profiles of the AFM images, estimates of the amplitudes of the different ripple phases are reported. To elucidate the processes of ripple formation and disappearance, a ripple-phase DPPC lipid bilayer was taken through the pretransition in the cooling and the heating...... was heated from the ripple phase and into the ripple-phase/fluid-phase coexistence temperature region, the AFM images revealed that several dynamic properties of the ripple phase are important for the melting behavior of the lipid mixture. Onset of melting is observed at grain boundaries between different......Temperature-controlled atomic force microscopy (AFM) has been used to visualize and study the structure and kinetics of ripple phases in one-component dipalmitoylphosphaticlylcholine (DPPC) and two-component dimyristoylphosphatidylcholine-distearoylphosphatidylcholine (DMPC-DSPC) lipid bilayers...

  6. Two-component signal transduction system SaeRS is involved in competence and penicillin susceptibility in Staphylococcus epidermidis.

    Science.gov (United States)

    Lou, Qiang; Ma, Yuanfang; Qu, Di

    2016-04-01

    Staphylococcus epidermidis, which is a causative pathogen of nosocomial infection, expresses its virulent traits such as biofilm and autolysis regulated by two-component signal transduction system SaeRS. In this study, the S. epidermidis SaeRS was identified to negatively regulate the expression of genes involved in competence (comF, murF), cytolysis (lrgA), and autolysis (lytS) by DNA microarray or real-time RT-PCR analysis. In addition, saeRS mutant showed increased competence and higher susceptibility to antibiotics such as penicillin and oxacillin than the wild-type strain. The study will be helpful for understanding the characterization of the SaeRS in S. epidermidis. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. Functional assembly of camphor converting two-component Baeyer-Villiger monooxygenases with a flavin reductase from E. coli.

    Science.gov (United States)

    Kadow, Maria; Balke, Kathleen; Willetts, Andrew; Bornscheuer, Uwe T; Bäckvall, J-E

    2014-05-01

    The major limitation in the synthetic application of two-component Baeyer-Villiger monooxygenases was addressed by identifying the 28-kDa flavin-reductase Fre from Escherichia coli as a suitable supplier of reduced FMN for these enzymes. Coexpression of Fre with either 2,5- or 3,6-diketocamphane monooxygenase from Pseudomonas putida NCIMB 10007 significantly enhanced the conversion of camphor and norcamphor serving as representative ketones. With purified enzymes, full conversion was achieved, while only slight amounts of product were formed in the absence of this flavin reductase. Fusion of the genes of Fre and DKCMOs into single open reading frame constructs resulted in unstable proteins exhibiting flavin reducing, but poor oxygenating activity, which led to overall decreased conversion of camphor.

  8. Three-body recombination of two-component cold atomic gases into deep dimers in an optical model

    DEFF Research Database (Denmark)

    Mikkelsen, Mathias; Jensen, A. S.; Fedorov, D. V.

    2015-01-01

    . The Efimov scaling between recombination peaks is calculated and shown to depend on both scattering lengths. Recombination is predicted to be largest for heavy-heavy-light systems. Universal properties of the optical parameters are indicated. We compare to available experiments and find in general very......We consider three-body recombination into deep dimers in a mass-imbalanced two-component atomic gas. We use an optical model where a phenomenological imaginary potential is added to the lowest adiabatic hyper-spherical potential. The consequent imaginary part of the energy eigenvalue corresponds...... to the decay rate or recombination probability of the three-body system. The method is formulated in details and the relevant qualitative features are discussed as functions of scattering lengths and masses. We use zero-range model in analyses of recent recombination data. The dominating scattering length...

  9. Calprotectin Increases the Activity of the SaeRS Two Component System and Murine Mortality during Staphylococcus aureus Infections.

    Directory of Open Access Journals (Sweden)

    Hoonsik Cho

    2015-07-01

    Full Text Available Calprotectin, the most abundant cytoplasmic protein in neutrophils, suppresses the growth of Staphylococcus aureus by sequestering the nutrient metal ions Zn and Mn. Here we show that calprotectin can also enhance the activity of the SaeRS two component system (TCS, a signaling system essential for production of over 20 virulence factors in S. aureus. The activity of the SaeRS TCS is repressed by certain divalent ions found in blood or neutrophil granules; however, the Zn bound-form of calprotectin relieves this repression. During staphylococcal encounter with murine neutrophils or staphylococcal infection of the murine peritoneal cavity, calprotectin increases the activity of the SaeRS TCS as well as the production of proinflammatory cytokines such as IL-1β and TNF-α, resulting in higher murine mortality. These results suggest that, under certain conditions, calprotectin can be exploited by S. aureus to increase bacterial virulence and host mortality.

  10. Calprotectin Increases the Activity of the SaeRS Two Component System and Murine Mortality during Staphylococcus aureus Infections.

    Science.gov (United States)

    Cho, Hoonsik; Jeong, Do-Won; Liu, Qian; Yeo, Won-Sik; Vogl, Thomas; Skaar, Eric P; Chazin, Walter J; Bae, Taeok

    2015-07-01

    Calprotectin, the most abundant cytoplasmic protein in neutrophils, suppresses the growth of Staphylococcus aureus by sequestering the nutrient metal ions Zn and Mn. Here we show that calprotectin can also enhance the activity of the SaeRS two component system (TCS), a signaling system essential for production of over 20 virulence factors in S. aureus. The activity of the SaeRS TCS is repressed by certain divalent ions found in blood or neutrophil granules; however, the Zn bound-form of calprotectin relieves this repression. During staphylococcal encounter with murine neutrophils or staphylococcal infection of the murine peritoneal cavity, calprotectin increases the activity of the SaeRS TCS as well as the production of proinflammatory cytokines such as IL-1β and TNF-α, resulting in higher murine mortality. These results suggest that, under certain conditions, calprotectin can be exploited by S. aureus to increase bacterial virulence and host mortality.

  11. Structure of the response regulator ChrA in the haem-sensing two-component system of Corynebacterium diphtheriae.

    Science.gov (United States)

    Doi, Akihiro; Nakamura, Hiro; Shiro, Yoshitsugu; Sugimoto, Hiroshi

    2015-08-01

    ChrA is a response regulator (RR) in the two-component system involved in regulating the degradation and transport of haem (Fe-porphyrin) in the pathogen Corynebacterium diphtheriae. Here, the crystal structure of full-length ChrA is described at a resolution of 1.8 Å. ChrA consists of an N-terminal regulatory domain, a long linker region and a C-terminal DNA-binding domain. A structural comparison of ChrA with other RRs revealed substantial differences in the relative orientation of the two domains and the conformation of the linker region. The structural flexibility of the linker could be an important feature in rearrangement of the domain orientation to create a dimerization interface to bind DNA during haem-sensing signal transduction.

  12. Influence of quantum diffraction and shielding on electron-ion collision in two-component semiclassical plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Hong, Woo-Pyo [Department of Electronics Engineering, Catholic University of Daegu, Hayang 712-702 (Korea, Republic of); Jung, Young-Dae, E-mail: ydjung@hanyang.ac.kr [Department of Physics, Applied Physics, and Astronomy, Rensselaer Polytechnic Institute, 110 8th Street, Troy, New York 12180-3590 (United States); Department of Applied Physics and Department of Bionanotechnology, Hanyang University, Ansan, Kyunggi-Do 426-791 (Korea, Republic of)

    2015-01-15

    The influence of quantum diffraction and shielding on the electron-ion collision process is investigated in two-component semiclassical plasmas. The eikonal method and micropotential taking into account the quantum diffraction and shielding are used to obtain the eikonal scattering phase shift and the eikonal collision cross section as functions of the collision energy, density parameter, Debye length, electron de Broglie wavelength, and the impact parameter. The result shows that the quantum diffraction and shielding effects suppress the eikonal scattering phase shift as well as the differential eikonal collision cross section, especially, in small-impact parameter regions. It is also shown that the quantum shielding effect on the eikonal collision cross section is more important in low-collision energies. In addition, it is found that the eikonal collision cross section increases with an increase in the density parameter. The variations of the eikonal cross section due to the quantum diffraction and shielding effects are also discussed.

  13. Steady-state composition of a two-component gas bubble growing in a liquid solution: self-similar approach

    CERN Document Server

    Gor, G Yu

    2009-01-01

    The paper presents an analytical description of the growth of a two-component bubble in a binary liquid-gas solution. We obtain asymptotic self-similar time dependence of the bubble radius and analytical expressions for the non-steady profiles of dissolved gases around the bubble. We show that the necessary condition for the self-similar regime of bubble growth is the constant, steady-state composition of the bubble. The equation for the steady-state composition is obtained. We reveal the dependence of the steady-state composition on the solubility laws of the bubble components. Besides, the universal, independent from the solubility laws, expressions for the steady-state composition are obtained for the case of strong supersaturations, which are typical for the homogeneous nucleation of a bubble.

  14. Odd-parity superconductors with two-component order parameters: Nematic and chiral, full gap, and Majorana node

    Science.gov (United States)

    Venderbos, Jörn W. F.; Kozii, Vladyslav; Fu, Liang

    2016-11-01

    Motivated by the recent experiment indicating that superconductivity in the doped topological insulator CuxBi2Se3 has an odd-parity pairing symmetry with rotational symmetry breaking, we study the general class of odd-parity superconductors with two-component order parameters in trigonal and hexagonal crystal systems. In the presence of strong spin-orbit interaction, we find two possible superconducting phases below Tc, a time-reversal-breaking (i.e., chiral) phase and an anisotropic (i.e., nematic) phase, and determine their relative energetics from the gap function in momentum space. The nematic superconductor generally has a full quasiparticle gap, whereas the chiral superconductor with a three-dimensional (3D) Fermi surface has point nodes with lifted spin degeneracy, resulting in itinerant Majorana fermions in the bulk and topological Majorana arcs on the surface.

  15. Relatedness between the two-component lantibiotics lacticin 3147 and staphylococcin C55 based on structure, genetics and biological activity

    Directory of Open Access Journals (Sweden)

    O'Sullivan Orla

    2007-04-01

    Full Text Available Abstract Background Two component lantibiotics, such as the plasmid-encoded lacticin 3147 produced by Lactococcus lactis DPC3147 and staphylococcin C55 produced by Staphylococcus aureus C55, represent an emerging subgroup of bacteriocins. These two bacteriocins are particularly closely related, exhibiting 86% (LtnA1 and C55α and 55% (LtnA2 and C55β identity in their component peptides. The aim of this study was to investigate, for the first time for any two component bacteriocins, the significance of the relatedness between these two systems. Results So close is this relatedness that the hybrid peptide pairs LtnA1:C55β and C55α:LtnA2 were found to have activities in the single nanomolar range, comparing well with the native pairings. To determine whether this flexibility extended to the associated post-translational modification/processing machinery, the staphylococcin C55 structural genes were directly substituted for their lacticin 3147 counterparts in the ltn operon on the large conjugative lactococcal plasmid pMRC01. It was established that the lacticin LtnA1 post-translational and processing machinery could produce functionally active C55α, but not C55β. In order to investigate in closer detail the significance of the differences between LtnA1 and C55α, three residues in LtnA1 were replaced with the equivalent residues in C55α. Surprisingly, one such mutant LtnA1-Leu21Ala was not produced. This may be significant given the positioning of this residue in a putative lipid II binding loop. Conclusion It is apparent, despite sharing striking similarities in terms of structure and activity, that these two complex bacteriocins display some highly dedicated features particular to either system.

  16. The σ(54)-dependent two-component system regulating sulfur oxidization (Sox) system in Acidithiobacillus caldus and some chemolithotrophic bacteria.

    Science.gov (United States)

    Li, Li-Feng; Fu, Luo-Jie; Lin, Jian-Qun; Pang, Xin; Liu, Xiang-Mei; Wang, Rui; Wang, Zhao-Bao; Lin, Jian-Qiang; Chen, Lin-Xu

    2017-03-01

    The sulfur oxidization (Sox) system is the central sulfur oxidization pathway of phototrophic and chemotrophic sulfur-oxidizing bacteria. Regulation and function of the Sox system in the chemotrophic Paracoccus pantotrophus has been elucidated; however, to date, no information is available on the regulation of this system in the chemolithotrophic Acidithiobacillus caldus, which is widely utilized in bioleaching. We described the novel tspSR-sox-like clusters in A. caldus and other chemolithotrophic sulfur-oxidizing bacteria containing Sox systems. The highly homologous σ(54)-dependent two-component signaling system (TspS/R), upstream of the sox operons in these novel clusters, was identified by phylogenetic analyses. A typical σ(54)-dependent promoter, P1, was identified upstream of soxX-I in the sox-I cluster of A. caldus MTH-04. The transcriptional start site (G) and the -12/-24 regions (GC/GG) of P1 were determined by rapid amplification of cDNA ends (5'RACE), and the upstream activator sequences (UASs; TGTCCCAAATGGGACA) were confirmed by electrophoretic mobility shift assays (EMSAs) in vitro and by UAS-probe-plasmids assays in vivo. Sequence analysis of promoter regions in tspSR-sox-like clusters revealed that there were similar σ(54)-dependent promoters upstream of the soxX genes. Based on our results, we proposed a TspSR-mediated signal transduction and transcriptional regulation pathway for the Sox system in A. caldus. The regulation of σ(54)-dependent two-component systems (TCSs) for Sox pathways were explained for the first time in A. caldus, A. thiooxidans, T. tepidarius, and T. denitrificans, indicating the significance of modulating the sulfur oxidization in these chemolithotrophic sulfur oxidizers.

  17. The VirSR two-component signal transduction system regulates NetB toxin production in Clostridium perfringens.

    Science.gov (United States)

    Cheung, Jackie K; Keyburn, Anthony L; Carter, Glen P; Lanckriet, Anouk L; Van Immerseel, Filip; Moore, Robert J; Rood, Julian I

    2010-07-01

    Clostridium perfringens causes several diseases in domestic livestock, including necrotic enteritis in chickens, which is of concern to the poultry industry due to its health implications and associated economic cost. The novel pore-forming toxin NetB is a critical virulence factor in the pathogenesis of this disease. In this study, we have examined the regulation of NetB toxin production. In C. perfringens, the quorum sensing-dependent VirSR two-component signal transduction system regulates genes encoding several toxins and extracellular enzymes. Analysis of the sequence upstream of the netB gene revealed the presence of potential DNA binding sites, or VirR boxes, that are recognized by the VirR response regulator. In vitro binding experiments showed that purified VirR was able to recognize and bind to these netB-associated VirR boxes. Furthermore, using a reporter gene assay, the netB VirR boxes were shown to be functional. Mutation of the virR gene in two avian C. perfringens strains was shown to significantly reduce the production of the NetB toxin; culture supernatants derived from these strains were no longer cytotoxic to Leghorn male hepatoma cells. Complementation with the virRS operon restored the toxin phenotypes to wild type. The results also showed that the VirSR two-component system regulates the expression of netB at the level of transcription. We postulate that in the gastrointestinal tract of infected birds, NetB production is upregulated when the population of C. perfringens cells reaches a threshold level that leads to activation of the VirSR system.

  18. The Nla28S/Nla28 two-component signal transduction system regulates sporulation in Myxococcus xanthus.

    Science.gov (United States)

    Sarwar, Zaara; Garza, Anthony G

    2012-09-01

    The response regulator Nla28 is a key component in a cascade of transcriptional activators that modulates expression of many important developmental genes in Myxococcus xanthus. In this study, we identified and characterized Nla28S, a histidine kinase that modulates the activity of this important regulator of M. xanthus developmental genes. We show that the putative cytoplasmic domain of Nla28S has the in vitro biochemical properties of a histidine kinase protein: it hydrolyzes ATP and undergoes an ATP-dependent autophosphorylation that is acid labile and base stable. We also show that the putative cytoplasmic domain of Nla28S transfers a phosphoryl group to Nla28 in vitro, that the phosphotransfer is specific, and that a substitution in the predicted site of Nla28 phosphorylation (aspartate 53) abolishes the phosphotransfer reaction. In phenotypic studies, we found that a mutation in nla28S produces a developmental phenotype similar to, but weaker than, that produced by a mutation in nla28; both mutations primarily affect sporulation. Together, these data indicate that Nla28S is the in vivo histidine kinase partner of Nla28 and that the primary function of the Nla28S/Nla28 two-component signal transduction system is to regulate sporulation genes. The results of genetic studies suggest that phosphorylation of Nla28S is important for the in vivo sporulation function of the Nla28S/Nla28 two-component system. In addition, the quorum signal known as A-signal is important for full developmental expression of the nla28S-nla28 operon, suggesting that quorum signaling regulates the availability of the Nla28S/Nla28 signal transduction circuit in developing cells.

  19. Characterization of a two-component regulatory system from Acinetobacter baumannii that controls biofilm formation and cellular morphology.

    Science.gov (United States)

    Tomaras, Andrew P; Flagler, Michael J; Dorsey, Caleb W; Gaddy, Jennifer A; Actis, Luis A

    2008-11-01

    Acinetobacter baumannii forms biofilms on abiotic surfaces, a phenotype that may explain its ability to survive in nosocomial environments and to cause device-related infections in compromised patients. The biofilm proficiency of the 19606 type strain depends on the production of pili, cell-surface appendages assembled via the CsuAB-A-B-C-D-E chaperone-usher secretion system. The screening of a bank of isogenic insertion derivatives led to the identification of a biofilm-deficient derivative in which a transposon insertion disrupted a gene predicted to encode the response regulator of a two-component regulatory system. This gene, which was named bfmR, is required for the expression of the Csu pili chaperone-usher assembly system. This coding region is followed by an ORF encoding a putative sensor kinase that was named bfmS, which plays a less relevant role in biofilm formation when cells are cultured in rich medium. Further examination showed that the bfmR mutant was capable of attaching to abiotic surfaces, although to levels significantly lower than those of the parental strain, when it was cultured in a chemically defined minimal medium. Additionally, the morphology of planktonic cells of this mutant, when grown in minimal medium, was drastically affected, while adherent mutant cells were indistinguishable in shape and size from the parental strain. Together, these results indicate that BfmR is part of a two-component regulatory system that plays an important role in the morphology of A. baumannii 19606 cells and their ability to form biofilms on abiotic surfaces.

  20. Critical point of gas-liquid type phase transition and phase equilibrium functions in developed two-component plasma model

    Energy Technology Data Exchange (ETDEWEB)

    Butlitsky, M. A.; Zelener, B. V. [Joint Institute for High Temperature of Russian Academy of Science, 125412, Russia, Moscow, Izhorskaya str. 13/2 (Russian Federation); Zelener, B. B. [Joint Institute for High Temperature of Russian Academy of Science, 125412, Russia, Moscow, Izhorskaya str. 13/2 (Russian Federation); Moscow Engineering Physics Institute, 115409, Russia, Moscow, Kashirskoe sh. 31 (Russian Federation)

    2014-07-14

    A two-component plasma model, which we called a “shelf Coulomb” model has been developed in this work. A Monte Carlo study has been undertaken to calculate equations of state, pair distribution functions, internal energies, and other thermodynamics properties. A canonical NVT ensemble with periodic boundary conditions was used. The motivation behind the model is also discussed in this work. The “shelf Coulomb” model can be compared to classical two-component (electron-proton) model where charges with zero size interact via a classical Coulomb law. With important difference for interaction of opposite charges: electrons and protons interact via the Coulomb law for large distances between particles, while interaction potential is cut off on small distances. The cut off distance is defined by an arbitrary ε parameter, which depends on system temperature. All the thermodynamics properties of the model depend on dimensionless parameters ε and γ = βe{sup 2}n{sup 1/3} (where β = 1/k{sub B}T, n is the particle's density, k{sub B} is the Boltzmann constant, and T is the temperature) only. In addition, it has been shown that the virial theorem works in this model. All the calculations were carried over a wide range of dimensionless ε and γ parameters in order to find the phase transition region, critical point, spinodal, and binodal lines of a model system. The system is observed to undergo a first order gas-liquid type phase transition with the critical point being in the vicinity of ε{sub crit}≈13(T{sub crit}{sup *}≈0.076),γ{sub crit}≈1.8(v{sub crit}{sup *}≈0.17),P{sub crit}{sup *}≈0.39, where specific volume v* = 1/γ{sup 3} and reduced temperature T{sup *} = ε{sup −1}.

  1. Critical point of gas-liquid type phase transition and phase equilibrium functions in developed two-component plasma model.

    Science.gov (United States)

    Butlitsky, M A; Zelener, B B; Zelener, B V

    2014-07-14

    A two-component plasma model, which we called a "shelf Coulomb" model has been developed in this work. A Monte Carlo study has been undertaken to calculate equations of state, pair distribution functions, internal energies, and other thermodynamics properties. A canonical NVT ensemble with periodic boundary conditions was used. The motivation behind the model is also discussed in this work. The "shelf Coulomb" model can be compared to classical two-component (electron-proton) model where charges with zero size interact via a classical Coulomb law. With important difference for interaction of opposite charges: electrons and protons interact via the Coulomb law for large distances between particles, while interaction potential is cut off on small distances. The cut off distance is defined by an arbitrary ɛ parameter, which depends on system temperature. All the thermodynamics properties of the model depend on dimensionless parameters ɛ and γ = βe(2)n(1/3) (where β = 1/kBT, n is the particle's density, kB is the Boltzmann constant, and T is the temperature) only. In addition, it has been shown that the virial theorem works in this model. All the calculations were carried over a wide range of dimensionless ɛ and γ parameters in order to find the phase transition region, critical point, spinodal, and binodal lines of a model system. The system is observed to undergo a first order gas-liquid type phase transition with the critical point being in the vicinity of ɛ(crit) ≈ 13(T(*)(crit) ≈ 0.076), γ(crit) ≈ 1.8(v(*)(crit) ≈ 0.17), P(*)(crit) ≈ 0.39, where specific volume v* = 1/γ(3) and reduced temperature T(*) = ɛ(-1).

  2. The VirSR Two-Component Signal Transduction System Regulates NetB Toxin Production in Clostridium perfringens▿

    Science.gov (United States)

    Cheung, Jackie K.; Keyburn, Anthony L.; Carter, Glen P.; Lanckriet, Anouk L.; Van Immerseel, Filip; Moore, Robert J.; Rood, Julian I.

    2010-01-01

    Clostridium perfringens causes several diseases in domestic livestock, including necrotic enteritis in chickens, which is of concern to the poultry industry due to its health implications and associated economic cost. The novel pore-forming toxin NetB is a critical virulence factor in the pathogenesis of this disease. In this study, we have examined the regulation of NetB toxin production. In C. perfringens, the quorum sensing-dependent VirSR two-component signal transduction system regulates genes encoding several toxins and extracellular enzymes. Analysis of the sequence upstream of the netB gene revealed the presence of potential DNA binding sites, or VirR boxes, that are recognized by the VirR response regulator. In vitro binding experiments showed that purified VirR was able to recognize and bind to these netB-associated VirR boxes. Furthermore, using a reporter gene assay, the netB VirR boxes were shown to be functional. Mutation of the virR gene in two avian C. perfringens strains was shown to significantly reduce the production of the NetB toxin; culture supernatants derived from these strains were no longer cytotoxic to Leghorn male hepatoma cells. Complementation with the virRS operon restored the toxin phenotypes to wild type. The results also showed that the VirSR two-component system regulates the expression of netB at the level of transcription. We postulate that in the gastrointestinal tract of infected birds, NetB production is upregulated when the population of C. perfringens cells reaches a threshold level that leads to activation of the VirSR system. PMID:20457789

  3. Activation of the Campylobacter jejuni FlgSR two-component system is linked to the flagellar export apparatus.

    Science.gov (United States)

    Joslin, Stephanie N; Hendrixson, David R

    2009-04-01

    Activation of sigma(54)-dependent gene expression essential for formation of flagella in Campylobacter jejuni requires the components of the inner membrane-localized flagellar export apparatus and the FlgSR two-component regulatory system. In this study, we characterized the FlgS sensor kinase and how activation of the protein is linked to the flagellar export apparatus. We found that FlgS is localized to the C. jejuni cytoplasm and that His141 of FlgS is essential for autophosphorylation, phosphorelay to the cognate FlgR response regulator, motility, and expression of sigma(54)-dependent flagellar genes. Mutants with incomplete flagellar export apparatuses produced wild-type levels of FlgS and FlgR, but they were defective for signaling through the FlgSR system. By using genetic approaches, we found that FlgSR activity is linked to and downstream of the flagellar export apparatus in a regulatory cascade that terminates in expression of sigma(54)-dependent flagellar genes. By analyzing defined flhB and fliI mutants of C. jejuni that form flagellar export apparatuses that are secretion incompetent, we determined that formation of the apparatus is required to contribute to the signal sensed by FlgS to terminate in activation of expression of sigma(54)-dependent flagellar genes. Considering that the flagellar export apparatuses of Escherichia coli and Salmonella species influence sigma(28)-dependent flagellar gene expression, our work expands the signaling activity of the apparatuses to include sigma(54)-dependent pathways of C. jejuni and possibly other motile bacteria. This study indicates that these apparatuses have broader functions beyond flagellar protein secretion, including activation of essential two-component regulatory systems required for expression of sigma(54)-dependent flagellar genes.

  4. Nonconvex Regularization in Remote Sensing

    Science.gov (United States)

    Tuia, Devis; Flamary, Remi; Barlaud, Michel

    2016-11-01

    In this paper, we study the effect of different regularizers and their implications in high dimensional image classification and sparse linear unmixing. Although kernelization or sparse methods are globally accepted solutions for processing data in high dimensions, we present here a study on the impact of the form of regularization used and its parametrization. We consider regularization via traditional squared (2) and sparsity-promoting (1) norms, as well as more unconventional nonconvex regularizers (p and Log Sum Penalty). We compare their properties and advantages on several classification and linear unmixing tasks and provide advices on the choice of the best regularizer for the problem at hand. Finally, we also provide a fully functional toolbox for the community.

  5. Conservative regularization of compressible flow

    CERN Document Server

    Krishnaswami, Govind S; Thyagaraja, Anantanarayanan

    2015-01-01

    Ideal Eulerian flow may develop singularities in vorticity w. Navier-Stokes viscosity provides a dissipative regularization. We find a local, conservative regularization - lambda^2 w times curl(w) of compressible flow and compressible MHD: a three dimensional analogue of the KdV regularization of the one dimensional kinematic wave equation. The regulator lambda is a field subject to the constitutive relation lambda^2 rho = constant. Lambda is like a position-dependent mean-free path. Our regularization preserves Galilean, parity and time-reversal symmetries. We identify locally conserved energy, helicity, linear and angular momenta and boundary conditions ensuring their global conservation. Enstrophy is shown to remain bounded. A swirl velocity field is identified, which transports w/rho and B/rho generalizing the Kelvin-Helmholtz and Alfven theorems. A Hamiltonian and Poisson bracket formulation is given. The regularized equations are used to model a rotating vortex, channel flow, plane flow, a plane vortex ...

  6. Approximate Sparse Regularized Hyperspectral Unmixing

    Directory of Open Access Journals (Sweden)

    Chengzhi Deng

    2014-01-01

    Full Text Available Sparse regression based unmixing has been recently proposed to estimate the abundance of materials present in hyperspectral image pixel. In this paper, a novel sparse unmixing optimization model based on approximate sparsity, namely, approximate sparse unmixing (ASU, is firstly proposed to perform the unmixing task for hyperspectral remote sensing imagery. And then, a variable splitting and augmented Lagrangian algorithm is introduced to tackle the optimization problem. In ASU, approximate sparsity is used as a regularizer for sparse unmixing, which is sparser than l1 regularizer and much easier to be solved than l0 regularizer. Three simulated and one real hyperspectral images were used to evaluate the performance of the proposed algorithm in comparison to l1 regularizer. Experimental results demonstrate that the proposed algorithm is more effective and accurate for hyperspectral unmixing than state-of-the-art l1 regularizer.

  7. Regular Small-World Network

    Institute of Scientific and Technical Information of China (English)

    ZOU Zhi-Yun; MAO Bao-Hua; HAO Hai-Ming; GAO Jian-Zhi; YANG Jie-Jiao

    2009-01-01

    According to the deficiencies in Watts and Strogatz's small-world network model, we present a new regular model to establish the small-world network. Besides the property of the small-world, this model has other properties such as accuracy in controlling the average shortest path length L, and the average clustering coefficient C, also regular network topology as well as enhanced network robustness. This method improves the construction of the small-world network essentially, so that the regular small-world network closely resembles the actual network. We also present studies on the relationships among the quantities of a variety of edges, L and C in regular small-world network in detail. This research lays the foundation for the establishment of the regular small-world network and acts as a good guidance for further research of this model and its applications.

  8. A Criterion for Regular Sequences

    Indian Academy of Sciences (India)

    D P Patil; U Storch; J Stückrad

    2004-05-01

    Let be a commutative noetherian ring and $f_1,\\ldots,f_r \\in R$. In this article we give (cf. the Theorem in $\\mathcal{x}$2) a criterion for $f_1,\\ldots,f_r$ to be regular sequence for a finitely generated module over which strengthens and generalises a result in [2]. As an immediate consequence we deduce that if $V(g_1,\\ldots,g_r) \\subseteq V(f_1,\\ldots,f_r)$ in Spec and if $f_1,\\ldots,f_r$ is a regular sequence in , then $g_1,\\ldots,g_r$ is also a regular sequence in .

  9. A Novel Two-Component System, GluR-GluK, Involved in Glutamate Sensing and Uptake in Streptomyces coelicolor.

    Science.gov (United States)

    Li, Lei; Jiang, Weihong; Lu, Yinhua

    2017-09-15

    Two-component systems (TCSs), the predominant signal transduction pathways employed by bacteria, play important roles in physiological metabolism in Streptomyces Here, a novel TCS, GluR-GluK (encoded by SCO5778-SCO5779), which is located divergently from the gluABCD operon encoding a glutamate uptake system, was identified as being involved in glutamate sensing and uptake as well as antibiotic biosynthesis in Streptomyces coelicolor Under the condition of minimal medium (MM) supplemented with different concentrations of glutamate, deletion of the gluR-gluK operon (gluR-K) resulted in enhanced actinorhodin (ACT) but reduced undecylprodigiosin (RED) and yellow type I polyketide (yCPK) production, suggesting that GluR-GluK plays a differential role in antibiotic biosynthesis. Furthermore, we found that the response regulator GluR directly promotes the expression of gluABCD under the culture condition of MM with a high concentration of glutamate (75 mM). Using the biolayer interferometry assay, we demonstrated that glutamate acts as the direct signal of the histidine kinase GluK. It was therefore suggested that upon sensing high concentrations of glutamate, GluR-GluK would be activated and thereby facilitate glutamate uptake by increasing gluABCD expression. Finally, we demonstrated that the role of GluR-GluK in antibiotic biosynthesis is independent of its function in glutamate uptake. Considering the wide distribution of the glutamate-sensing (GluR-GluK) and uptake (GluABCD) module in actinobacteria, it could be concluded that the GluR-GluK signal transduction pathway involved in secondary metabolism and glutamate uptake should be highly conserved in this bacterial phylum.IMPORTANCE In this study, a novel two-component system (TCS), GluR-GluK, was identified to be involved in glutamate sensing and uptake as well as antibiotic biosynthesis in Streptomyces coelicolor A possible GluR-GluK working model was proposed. Upon sensing high glutamate concentrations (such as 75

  10. On Regular Power-Substitution

    Institute of Scientific and Technical Information of China (English)

    Huanyin CHEN

    2009-01-01

    The necessary and sufficient conditions under which a ring satisfies regular power-substitution are investigated. It is shown that a ring R satisfies regular power-substitution if and only if a(-~)b in R implies that there exist n ∈ N and a U ∈ GLn(R) such that aU =Ub if and only if for any regular x ∈ R there exist m,n ∈ N and U ∈ GLn(R) such that xmIn = xmUxm, where a(-~)b means that there exists x, y, z ∈ R such that a = ybx, b = xaz and x = xyx = xzx. It is proved that every directly finite simple ring satisfies regular power-substitution. Some applications for stably free R-modules are also obtained.

  11. NONCONVEX REGULARIZATION FOR SHAPE PRESERVATION

    Energy Technology Data Exchange (ETDEWEB)

    CHARTRAND, RICK [Los Alamos National Laboratory

    2007-01-16

    The authors show that using a nonconvex penalty term to regularize image reconstruction can substantially improve the preservation of object shapes. The commonly-used total-variation regularization, {integral}|{del}u|, penalizes the length of the object edges. They show that {integral}|{del}u|{sup p}, 0 < p < 1, only penalizes edges of dimension at least 2-p, and thus finite-length edges not at all. We give numerical examples showing the resulting improvement in shape preservation.

  12. Regularization with a pruning prior

    DEFF Research Database (Denmark)

    Goutte, Cyril; Hansen, Lars Kai

    1997-01-01

    We investigate the use of a regularization priorthat we show has pruning properties. Analyses areconducted both using a Bayesian framework and withthe generalization method, on a simple toyproblem. Results are thoroughly compared withthose obtained with a traditional weight decay.......We investigate the use of a regularization priorthat we show has pruning properties. Analyses areconducted both using a Bayesian framework and withthe generalization method, on a simple toyproblem. Results are thoroughly compared withthose obtained with a traditional weight decay....

  13. Regular and Periodic Tachyon Kinks

    OpenAIRE

    Bazeia, D.; Menezes, R.; Ramos, J. G.

    2004-01-01

    We search for regular tachyon kinks in an extended model, which includes the tachyon action recently proposed to describe the tachyon field. The extended model that we propose adds a new contribution to the tachyon action, and seems to enrich the present scenario for the tachyon field. We have found stable tachyon kinks of regular profile, which may appropriately lead to the singular kink found by Sen sometime ago. Also, under specific conditions we may find periodic array of kink-antikink co...

  14. Commuting Π-regular rings

    Directory of Open Access Journals (Sweden)

    Shervin Sahebi

    2014-05-01

    Full Text Available ‎$R$ is called commuting regular ring (resp‎. ‎semigroupif‎ for each $x,y\\in R$ there exists $a\\in R$‎ such that$xy=yxayx$‎. ‎In this paper‎, ‎we introduce the concept of‎‎commuting $\\pi$-regular rings (resp‎. ‎semigroups and‎‎study various properties of them.

  15. Two-component systems are involved in the regulation of botulinum neurotoxin synthesis in Clostridium botulinum type A strain Hall.

    Science.gov (United States)

    Connan, Chloé; Brüggemann, Holger; Brueggemann, Holger; Mazuet, Christelle; Raffestin, Stéphanie; Cayet, Nadège; Popoff, Michel R

    2012-01-01

    Clostridium botulinum synthesizes a potent neurotoxin (BoNT) which associates with non-toxic proteins (ANTPs) to form complexes of various sizes. The bont and antp genes are clustered in two operons. In C. botulinum type A, bont/A and antp genes are expressed during the end of the exponential growth phase and the beginning of the stationary phase under the control of an alternative sigma factor encoded by botR/A, which is located between the two operons. In the genome of C. botulinum type A strain Hall, 30 gene pairs predicted to encode two-component systems (TCSs) and 9 orphan regulatory genes have been identified. Therefore, 34 Hall isogenic antisense strains on predicted regulatory genes (29 TCSs and 5 orphan regulatory genes) have been obtained by a mRNA antisense procedure. Two TCS isogenic antisense strains showed more rapid growth kinetics and reduced BoNT/A production than the control strain, as well as increased bacterial lysis and impairment of the bacterial cell wall structure. Three other TCS isogenic antisense strains induced a low level of BoNT/A and ANTP production. Interestingly, reduced expression of bont/A and antp genes was shown to be independent of botR/A. These results indicate that BoNT/A synthesis is under the control of a complex network of regulation including directly at least three TCSs.

  16. Two-component systems are involved in the regulation of botulinum neurotoxin synthesis in Clostridium botulinum type A strain Hall.

    Directory of Open Access Journals (Sweden)

    Chloé Connan

    Full Text Available Clostridium botulinum synthesizes a potent neurotoxin (BoNT which associates with non-toxic proteins (ANTPs to form complexes of various sizes. The bont and antp genes are clustered in two operons. In C. botulinum type A, bont/A and antp genes are expressed during the end of the exponential growth phase and the beginning of the stationary phase under the control of an alternative sigma factor encoded by botR/A, which is located between the two operons. In the genome of C. botulinum type A strain Hall, 30 gene pairs predicted to encode two-component systems (TCSs and 9 orphan regulatory genes have been identified. Therefore, 34 Hall isogenic antisense strains on predicted regulatory genes (29 TCSs and 5 orphan regulatory genes have been obtained by a mRNA antisense procedure. Two TCS isogenic antisense strains showed more rapid growth kinetics and reduced BoNT/A production than the control strain, as well as increased bacterial lysis and impairment of the bacterial cell wall structure. Three other TCS isogenic antisense strains induced a low level of BoNT/A and ANTP production. Interestingly, reduced expression of bont/A and antp genes was shown to be independent of botR/A. These results indicate that BoNT/A synthesis is under the control of a complex network of regulation including directly at least three TCSs.

  17. The two-component system CBO2306/CBO2307 is important for cold adaptation of Clostridium botulinum ATCC 3502.

    Science.gov (United States)

    Derman, Yağmur; Isokallio, Marita; Lindström, Miia; Korkeala, Hannu

    2013-10-01

    Clostridium botulinum is a notorious foodborne pathogen. Its ability to adapt to and grow at low temperatures is of interest for food safety. Two-component systems (TCSs) have been reported to be involved in cold-shock and growth at low temperatures. Here we show the importance of TCS CBO2306/CBO2307 in the cold-shock response of C. botulinum ATCC 3502. The relative expression levels of the cbo2306 and cbo2307 were up to 4.4-fold induced in the cold-shocked cultures but negatively regulated in the late-log and stationary growth phase in relation to early logarithmic growth phase in non-shocked cultures. Importance of the CBO2306/CBO2307 in the cold stress was further demonstrated by impaired growth of insertional cbo2306 or cbo2307 knockout mutants in relation to the wild-type strain ATCC 3502. The results suggest that the TCS CBO2306/CBO2307 is important for cold-shock response and adaptation of C. botulinum ATCC 3502 to low temperature.

  18. Micro-Structured Two-Component 3D Metamaterials with Negative Thermal-Expansion Coefficient from Positive Constituents

    Science.gov (United States)

    Qu, Jingyuan; Kadic, Muamer; Naber, Andreas; Wegener, Martin

    2017-01-01

    Controlling the thermal expansion of materials is of great technological importance. Uncontrolled thermal expansion can lead to failure or irreversible destruction of structures and devices. In ordinary crystals, thermal expansion is governed by the asymmetry of the microscopic binding potential, which cannot be adjusted easily. In artificial crystals called metamaterials, thermal expansion can be controlled by structure. Here, following previous theoretical work, we fabricate three-dimensional (3D) two-component polymer micro-lattices by using gray-tone laser lithography. We perform cross-correlation analysis of optical microscopy images taken at different sample temperatures. The derived displacement-vector field reveals that the thermal expansion and resulting bending of the bi-material beams leads to a rotation of the 3D chiral crosses arranged onto a 3D checkerboard pattern within one metamaterial unit cell. These rotations can compensate the expansion of the all positive constituents, leading to an effectively near-zero thermal length-expansion coefficient, or over-compensate the expansion, leading to an effectively negative thermal length-expansion coefficient. This evidences a striking level of thermal-expansion control.

  19. A Two-Component Regulatory System Impacts Extracellular Membrane-Derived Vesicle Production in Group A Streptococcus

    Directory of Open Access Journals (Sweden)

    Ulrike Resch

    2016-11-01

    Full Text Available Export of macromolecules via extracellular membrane-derived vesicles (MVs plays an important role in the biology of Gram-negative bacteria. Gram-positive bacteria have also recently been reported to produce MVs; however, the composition and mechanisms governing vesiculogenesis in Gram-positive bacteria remain undefined. Here, we describe MV production in the Gram-positive human pathogen group A streptococcus (GAS, the etiological agent of necrotizing fasciitis and streptococcal toxic shock syndrome. M1 serotype GAS isolates in culture exhibit MV structures both on the cell wall surface and in the near vicinity of bacterial cells. A comprehensive analysis of MV proteins identified both virulence-associated protein substrates of the general secretory pathway in addition to “anchorless surface proteins.” Characteristic differences in the contents, distributions, and fatty acid compositions of specific lipids between MVs and GAS cell membrane were also observed. Furthermore, deep RNA sequencing of vesicular RNAs revealed that GAS MVs contained differentially abundant RNA species relative to bacterial cellular RNA. MV production by GAS strains varied in a manner dependent on an intact two-component system, CovRS, with MV production negatively regulated by the system. Modulation of MV production through CovRS was found to be independent of both GAS cysteine protease SpeB and capsule biosynthesis. Our data provide an explanation for GAS secretion of macromolecules, including RNAs, lipids, and proteins, and illustrate a regulatory mechanism coordinating this secretory response.

  20. Maladaptive correlates of the failure to forgive self and others: further evidence for a two-component model of forgiveness.

    Science.gov (United States)

    Ross, Scott R; Hertenstein, Matthew J; Wrobel, Thomas A

    2007-04-01

    In a sample composed of 162 young adults, we examined the generalizability of an orthogonal, 2-component model of forgiveness previously reported by Ross, Kendall, Matters, Rye, and Wrobel (2004). Furthermore, we examined the relationship of these two components with maladaptive personality characteristics as measured by the Schedule for Nonadaptive and Adaptive Personality (SNAP; Clark, 1993), with an emphasis on Five-factor model markers of personality. Using multiple measures of forgiveness, principal components analysis supported a 2-component model representing self-forgiveness and other forgiveness. Despite the independence of self-forgiveness and other forgiveness, zero order correlations with SNAP scales supported convergent more than discriminant validity. In contrast, hierarchical multiple regression analyses emphasized the discriminant validity of self-forgiveness and other forgiveness. Among indices of Neuroticism, Extraversion, and Agreeableness, Negative Temperament (+) was the sole predictor of self-forgiveness. In contrast, Positive Temperament (+), Aggression (-), and Histrionic PD (-) were most associated with other forgiveness. Overall, these findings support the validity of these factors and highlight the importance of self-forgiveness in clinical assessment.

  1. The YvqE two-component system controls biofilm formation and acid production in Streptococcus pyogenes.

    Science.gov (United States)

    Isaka, Masanori; Tatsuno, Ichiro; Maeyama, Jun-Ichi; Matsui, Hideyuki; Zhang, Yan; Hasegawa, Tadao

    2016-07-01

    In Streptococcus pyogenes, proteins involved in determining virulence are controlled by stand-alone response regulators and by two-component regulatory systems. Previous studies reported that, compared to the parental strain, the yvqE sensor knockout strain showed significantly reduced growth and lower virulence. To determine the function of YvqE, we performed biofilm analysis and pH assays on yvqE mutants, and site-directed mutagenesis of YvqE. The yvqE deletion mutant showed a slower acid production rate, indicating that YvqE regulates acid production from sugar fermentation. The mutant strain, in which the Asp(26) residue in YvqE was replaced with Asn, affected biofilm formation, suggesting that this amino acid senses hydrogen ions produced by fermentative sugar metabolism. Signals received by YvqE were directly or indirectly responsible for inducing pilus expression. This study shows that at low environmental pH, biofilm formation in S. pyogenes is mediated by YvqE and suggests that regulation of pilus expression by environmental acidification could be directly under the control of YvqE.

  2. Comparative Expression Analysis of Two-Component System Members in Arabidopsis and Oryza sativa under Abiotic Stress

    Directory of Open Access Journals (Sweden)

    Anupama eSingh

    2015-09-01

    Full Text Available Two component system (TCS is one of the key signal sensing machinery which enables species to sense environmental stimuli. It essentially comprises of three major components, sensory histidine kinase proteins (HKs, histidine phosphotransfer proteins (Hpts and response regulator proteins (RRs. The members of the TCS family have already been identified in Arabidopsis and rice but the knowledge about their functional indulgence during various abiotic stress conditions remains meagre. Current study is an attempt to carry out comprehensive analysis of the expression of TCS members in response to various abiotic stress conditions and in various plant tissues in Arabidopsis and rice using MPSS and publicly available microarray data. The analysis suggests that despite having almost similar number of genes, rice expresses higher number of TCS members during various abiotic stress conditions than Arabidopsis. We found that the TCS machinery is regulated by not only various abiotic stresses, but also by the tissue specificity. Analysis of expression of some representative members of TCS gene family showed their regulation by the diurnal cycle in rice seedlings, thus bringing-in another level of their transcriptional control. Thus, we report a highly complex and tight regulatory network of TCS members, as influenced by the tissue, abiotic stress signal and diurnal rhythm. The insights on the comparative expression analysis presented in this study may provide crucial leads towards dissection of diverse role(s of the various TCS family members in Arabidopsis and rice.

  3. A Cyclic di-GMP-binding Adaptor Protein Interacts with Histidine Kinase to Regulate Two-component Signaling.

    Science.gov (United States)

    Xu, Linghui; Venkataramani, Prabhadevi; Ding, Yichen; Liu, Yang; Deng, Yinyue; Yong, Grace Lisi; Xin, Lingyi; Ye, Ruijuan; Zhang, Lianhui; Yang, Liang; Liang, Zhao-Xun

    2016-07-29

    The bacterial messenger cyclic di-GMP (c-di-GMP) binds to a diverse range of effectors to exert its biological effect. Despite the fact that free-standing PilZ proteins are by far the most prevalent c-di-GMP effectors known to date, their physiological function and mechanism of action remain largely unknown. Here we report that the free-standing PilZ protein PA2799 from the opportunistic pathogen Pseudomonas aeruginosa interacts directly with the hybrid histidine kinase SagS. We show that PA2799 (named as HapZ: histidine kinase associated PilZ) binds directly to the phosphoreceiver (REC) domain of SagS, and that the SagS-HapZ interaction is further enhanced at elevated c-di-GMP concentration. We demonstrate that binding of HapZ to SagS inhibits the phosphotransfer between SagS and the downstream protein HptB in a c-di-GMP-dependent manner. In accordance with the role of SagS as a motile-sessile switch and biofilm growth factor, we show that HapZ impacts surface attachment and biofilm formation most likely by regulating the expression of a large number of genes. The observations suggest a previously unknown mechanism whereby c-di-GMP mediates two-component signaling through a PilZ adaptor protein.

  4. A highly efficient white-light-emitting diode based on a two-component polyfluorene/quantum dot composite

    Science.gov (United States)

    Dayneko, S. V.; Samokhvalov, P. S.; Lypenko, D.; Nosova, G. I.; Berezin, I. A.; Yakimanskii, A. V.; Chistyakov, A. A.; Nabiev, I.

    2017-01-01

    Organic light-emitting diodes (OLEDs) are attracting great interest of the scientific community and industry because they can be grown on flexible substrates using relatively simple and inexpensive technologies (solution processes). However, a problem in the fabrication of white OLEDs is that it is difficult to achieve a balance between the intensities of individual emission components in the blue, green, and red spectral regions. In this work, we try to solve this problem by creating a two-component light-emitting diode based on modified polyfluorene (PF-BT), which efficiently emits in the blue-green region, and CdSe/ZnS/CdS/ZnS semiconductor quantum dots emitting in the orange-red region with a fluorescence quantum yield exceeding 90%. By changing the mass ratio of components in the active light-emitting composite within 40-50%, it is possible to transform the diode emission spectrum from cold to warm white light without loss of the diode efficiency. It is very likely that optimization of the morphology of multilayer light-emitting diodes will lead to further improvement of their characteristics.

  5. Structural dynamics of the two-component response regulator RstA in recognition of promoter DNA element

    Science.gov (United States)

    Li, Yi-Chuan; Chang, Chung-ke; Chang, Chi-Fon; Cheng, Ya-Hsin; Fang, Pei-Ju; Yu, Tsunai; Chen, Sheng-Chia; Li, Yi-Ching; Hsiao, Chwan-Deng; Huang, Tai-huang

    2014-01-01

    The RstA/RstB system is a bacterial two-component regulatory system consisting of the membrane sensor, RstB and its cognate response regulator (RR) RstA. The RstA of Klebsiella pneumoniae (kpRstA) consists of an N-terminal receiver domain (RD, residues 1–119) and a C-terminal DNA-binding domain (DBD, residues 130–236). Phosphorylation of kpRstA induces dimerization, which allows two kpRstA DBDs to bind to a tandem repeat, called the RstA box, and regulate the expression of downstream genes. Here we report the solution and crystal structures of the free kpRstA RD, DBD and DBD/RstA box DNA complex. The structure of the kpRstA DBD/RstA box complex suggests that the two protomers interact with the RstA box in an asymmetric fashion. Equilibrium binding studies further reveal that the two protomers within the kpRstA dimer bind to the RstA box in a sequential manner. Taken together, our results suggest a binding model where dimerization of the kpRstA RDs provides the platform to allow the first kpRstA DBD protomer to anchor protein–DNA interaction, whereas the second protomer plays a key role in ensuring correct recognition of the RstA box. PMID:24990372

  6. The Role of CzcRS Two-Component Systems in the Heavy Metal Resistance of Pseudomonas putida X4

    Directory of Open Access Journals (Sweden)

    Pulin Liu

    2015-07-01

    Full Text Available The role of different czcRS genes in metal resistance and the cross-link between czcRS and czcCBA in Pseudomonas putida X4 were studied to advance understanding of the mechanisms by which P. putida copes with metal stress. Similar to P. putida KT2440, two complete czcRS1 and czcRS2 two-component systems, as well as a czcR3 without the corresponding sensing component were amplified in P. putida X4. The histidine kinase genes czcS1 and czcS2 were inactivated and fused to lacZ by homologous recombination. The lacZ fusion assay revealed that Cd2+ and Zn2+ caused a decrease in the transcription of czcRS1, whereas Cd2+ treatment enhanced the transcription of czcRS2. The mutation of different czcRSs showed that all czcRSs are necessary to facilitate full metal resistance in P. putida X4. A putative gene just downstream of czcR3 is related to metal ion resistance, and its transcription was activated by Zn2+. Data from quantitative real-time polymerase chain reaction (qRT-PCR strongly suggested that czcRSs regulate the expression of czcCBA, and a cross-link exists between different czcRSs.

  7. A two-component jet model based on the Blandford-Znajek and Blandford-Payne processes

    CERN Document Server

    Xie, Wei; Zou, Yuan-Chuan; Wang, Ding-Xiong; Wu, Qingwen; Wang, Jiu-Zhou

    2012-01-01

    We propose a two-component jet model consistent with the observations of several gamma ray bursts (GRBs) and active galactic nuclei (AGNs). The jet consists of inner and outer components, and they are supposed to be driven by the Blandford-Znajek (BZ) and Blandford-Payne (BP) processes, respectively. The baryons in the BP jet is accelerated centrifugally via the magnetic field anchored in the accretion disk. The BZ jet is assumed to be entrained a fraction of accreting matter leaving the inner edge of the accretion disk, and the baryons are accelerated in the conversion from electromagnetic energy to the kinetic energy. By fitting the Lorentz factors of some GRBs (GRB 030329, GRB 051221A, GRB 080413B) and AGNs (Cen A, Mkn 501 and Mkn 421) with this model, we constrain the physical parameters related to the accretion and outflow of these two kind of objects. We conclude that the spine/sheath structure of the jet from these sources can be interpreted naturally by the BZ and BP processes.

  8. Gene expression of a two-component regulatory system associated with sunscreen biosynthesis in the cyanobacterium Nostoc punctiforme ATCC 29133.

    Science.gov (United States)

    Janssen, Jacob; Soule, Tanya

    2016-01-01

    Long-wavelength ultraviolet radiation (UVA) can damage cells through photooxidative stress, leading to harmful photosensitized proteins and pigments in cyanobacteria. To mitigate damage, some cyanobacteria secrete the UVA-absorbing pigment scytonemin into their extracellular sheath. Comparative genomic analyses suggest that scytonemin biosynthesis is regulated by the two-component regulatory system (TCRS) proteins encoded by Npun_F1277 and Npun_F1278 in the cyanobacterium Nostoc punctiforme ATCC 29133. To understand the dynamics of these genes, their expression was measured following exposure to UVA, UVB, high visible (VIS) irradiance and oxidative stress for 20, 40 and 60 min. Overall, both genes had statistically similar patterns of expression for all four conditions and were generally upregulated, except for those exposed to UVB by 60 min and for the cells under oxidative stress. The greatest UVA response was an upregulation by 20 min, while the response to UVB was the most dramatic and persisted through 40 min. High VIS irradiance resulted in a modest upregulation, while oxidative stress caused a slight downregulation. Both genes were also found to occur on the same transcript. These results demonstrate that these genes are positively responding to several light-associated conditions, which suggests that this TCRS may regulate more than just scytonemin biosynthesis under UVA stress. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  9. A two-component jet model based on the Blandford-Znajek and Blandford-Payne processes

    Science.gov (United States)

    Xie, Wei; Lei, Wei-Hua; Zou, Yuan-Chuan; Wang, Ding-Xiong; Wu, Qingwen; Wang, Jiu-Zhou

    2012-07-01

    We propose a two-component jet model consistent with the observations of several gamma ray bursts (GRBs) and active galactic nuclei (AGNs). The jet consists of inner and outer components, which are supposed to be driven by the Blandford-Znajek (BZ) and Blandford-Payne (BP) processes, respectively. The baryons in the BP jet are accelerated centrifugally via the magnetic field anchored in the accretion disk. The BZ jet is assumed to be entrained in a fraction of accreting matter leaving the inner edge of the accretion disk, and the baryons are accelerated in the conversion from electromagnetic energy to kinetic energy. By fitting the Lorentz factors of some GRBs (GRB 030329, GRB 051221A and GRB 080413B) and AGNs (Cen A, Mkn 501 and Mkn 421) with this model, we constrain the physical parameters related to the accretion and outflow of these two kinds of objects. We conclude that the spine/sheath structure of the jet from these sources can be interpreted naturally by the BZ and BP processes.

  10. A two-component jet model based on the Blandford-Znajek and Blandford-Payne processes

    Institute of Scientific and Technical Information of China (English)

    Wei Xie; Wei-Hua Lei; Yuan-Chuan Zou; Ding-Xiong Wang; Qingwen Wu; Jiu-Zhou Wang

    2012-01-01

    We propose a two-component jet model consistent with the observations of several gamma ray bursts(GRBs)and active galactic nuclei(AGNs).The jet consists of inner and outer components,which are supposed to be driven by the BlandfordZnajek(BZ)and Blandford-Payne(BP)processes,respectively.The baryons in the BP jet are accelerated centrifugally via the magnetic field anchored in the accretion disk.The BZ jet is assumed to be entrained in a fraction of accreting matter leaving the inner edge of the accretion disk,and the baryons are accelerated in the conversion from electromagnetic energy to kinetic energy.By fitting the Lorentz factors of some GRBs(GRB 030329,GRB 051221A and GRB 080413B)and AGNs(Cen A,Mkn 501 and Mkn 421)with this model,we constrain the physical parameters related to the accretion and outflow of these two kinds of objects.We conclude that the spine/sheath structure of the jet from these sources can be interpreted naturally by the BZ and BP processes.

  11. Two-component system response regulators involved in virulence of Streptococcus pneumoniae TIGR4 in infective endocarditis.

    Directory of Open Access Journals (Sweden)

    My Trihn

    Full Text Available Streptococci resident in the oral cavity have been linked to infective endocarditis (IE. While other viridans streptococci are commonly studied in relation to IE, less research has been focused on Streptococcus pneumoniae. We established for the first time an animal model of S. pneumoniae IE, and examined the virulence of the TIGR4 strain in this model. We hypothesized that two-component systems (TCS may mediate S. pneumoniae TIGR4 strain virulence in IE and examined TCS response regulator (RR mutants of TIGR4 in vivo with the IE model. Thirteen of the 14 RR protein genes were mutagenized, excluding only the essential gene SP_1227. The requirement of the 13 RRs for S. pneumoniae competitiveness in the IE model was assessed in vivo through use of quantitative real-time PCR (qPCR and competitive index assays. Using real-time PCR, several RR mutants were detected at significantly lower levels in infected heart valves compared with a control strain suggesting the respective RRs are candidate virulence factors for IE. The virulence reduction of the ΔciaR mutant was further confirmed by competitive index assay. Our data suggest that CiaR is a virulence factor of S. pneumoniae strain TIGR4 for IE.

  12. Two-component system response regulators involved in virulence of Streptococcus pneumoniae TIGR4 in infective endocarditis.

    Science.gov (United States)

    Trihn, My; Ge, Xiuchun; Dobson, Alleson; Kitten, Todd; Munro, Cindy L; Xu, Ping

    2013-01-01

    Streptococci resident in the oral cavity have been linked to infective endocarditis (IE). While other viridans streptococci are commonly studied in relation to IE, less research has been focused on Streptococcus pneumoniae. We established for the first time an animal model of S. pneumoniae IE, and examined the virulence of the TIGR4 strain in this model. We hypothesized that two-component systems (TCS) may mediate S. pneumoniae TIGR4 strain virulence in IE and examined TCS response regulator (RR) mutants of TIGR4 in vivo with the IE model. Thirteen of the 14 RR protein genes were mutagenized, excluding only the essential gene SP_1227. The requirement of the 13 RRs for S. pneumoniae competitiveness in the IE model was assessed in vivo through use of quantitative real-time PCR (qPCR) and competitive index assays. Using real-time PCR, several RR mutants were detected at significantly lower levels in infected heart valves compared with a control strain suggesting the respective RRs are candidate virulence factors for IE. The virulence reduction of the ΔciaR mutant was further confirmed by competitive index assay. Our data suggest that CiaR is a virulence factor of S. pneumoniae strain TIGR4 for IE.

  13. Identification of a U/Zn/Cu responsive global regulatory two-component system in Caulobacter crescentus.

    Science.gov (United States)

    Park, Dan M; Overton, K Wesley; Liou, Megan J; Jiao, Yongqin

    2016-12-30

    Despite the well-known toxicity of uranium (U) to bacteria, little is known about how cells sense and respond to U. The recent finding of a U-specific stress response in Caulobacter crescentus has provided a foundation for studying the mechanisms of U- perception in bacteria. To gain insight into this process, we used a forward genetic screen to identify the regulatory components governing expression of the urcA promoter (PurcA ) that is strongly induced by U. This approach unearthed a previously uncharacterized two-component system, named UzcRS, which is responsible for U-dependent activation of PurcA . UzcRS is also highly responsive to zinc and copper, revealing a broader specificity than previously thought. Using ChIP-seq, we found that UzcR binds extensively throughout the genome in a metal-dependent manner and recognizes a noncanonical DNA-binding site. Coupling the genome-wide occupancy data with RNA-seq analysis revealed that UzcR is a global regulator of transcription, predominately activating genes encoding proteins that are localized to the cell envelope; these include metallopeptidases, multidrug-resistant efflux (MDR) pumps, TonB-dependent receptors and many proteins of unknown function. Collectively, our data suggest that UzcRS couples the perception of U, Zn and Cu with a novel extracytoplasmic stress response.

  14. Laplace-transformed atomic orbital-based Møller-Plesset perturbation theory for relativistic two-component Hamiltonians.

    Science.gov (United States)

    Helmich-Paris, Benjamin; Repisky, Michal; Visscher, Lucas

    2016-07-07

    We present a formulation of Laplace-transformed atomic orbital-based second-order Møller-Plesset perturbation theory (MP2) energies for two-component Hamiltonians in the Kramers-restricted formalism. This low-order scaling technique can be used to enable correlated relativistic calculations for large molecular systems. We show that the working equations to compute the relativistic MP2 energy differ by merely a change of algebra (quaternion instead of real) from their non-relativistic counterparts. With a proof-of-principle implementation we study the effect of the nuclear charge on the magnitude of half-transformed integrals and show that for light elements spin-free and spin-orbit MP2 energies are almost identical. Furthermore, we investigate the effect of separation of charge distributions on the Coulomb and exchange energy contributions, which show the same long-range decay with the inter-electronic/atomic distance as for non-relativistic MP2. A linearly scaling implementation is possible if the proper distance behavior is introduced to the quaternion Schwarz-type estimates as for non-relativistic MP2.

  15. High Energy Positrons and Gamma Radiation from Decaying Constituents of a two-component Dark Atom Model

    CERN Document Server

    Belotsky, K; Kouvaris, C; Laletin, M

    2015-01-01

    We study a two component dark matter candidate inspired by the Minimal Walking Technicolor model. Dark matter consists of a dominant SIMP-like dark atom component made of bound states between primordial helium nuclei and a doubly charged technilepton, and a small WIMP-like component made of another dark atom bound state between a doubly charged technibaryon and a technilepton. This scenario is consistent with direct search experimental findings because the dominant SIMP component interacts too strongly to reach the depths of current detectors with sufficient energy to recoil and the WIMP-like component is too small to cause significant amount of events. In this context a metastable technibaryon that decays to $e^+e^+$, $\\mu^+ \\mu^+$ and $\\tau^+ \\tau^+$ can in principle explain the observed positron excess by AMS-02 and PAMELA, while being consistent with the photon flux observed by FERMI/LAT. We scan the parameters of the model and we find the best possible fit to the latest experimental data. We find that th...

  16. A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003.

    Science.gov (United States)

    Alvarez-Martin, Pablo; Fernández, Matilde; O'Connell-Motherway, Mary; O'Connell, Kerry Joan; Sauvageot, Nicolas; Fitzgerald, Gerald F; MacSharry, John; Zomer, Aldert; van Sinderen, Douwe

    2012-08-01

    This work reports on the identification and molecular characterization of the two-component regulatory system (2CRS) PhoRP, which controls the response to inorganic phosphate (P(i)) starvation in Bifidobacterium breve UCC2003. The response regulator PhoP was shown to bind to the promoter region of pstSCAB, specifying a predicted P(i) transporter system, as well as that of phoU, which encodes a putative P(i)-responsive regulatory protein. This interaction is assumed to cause transcriptional modulation under conditions of P(i) limitation. Our data suggest that the phoRP genes are subject to positive autoregulation and, together with pstSCAB and presumably phoU, represent the complete regulon controlled by the phoRP-encoded 2CRS in B. breve UCC2003. Determination of the minimal PhoP binding region combined with bioinformatic analysis revealed the probable recognition sequence of PhoP, designated here as the PHO box, which together with phoRP is conserved among many high-GC-content Gram-positive bacteria. The importance of the phoRP 2CRS in the response of B. breve to P(i) starvation conditions was confirmed by analysis of a B. breve phoP insertion mutant which exhibited decreased growth under phosphate-limiting conditions compared to its parent strain UCC2003.

  17. Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus.

    Science.gov (United States)

    Ji, Quanjiang; Chen, Peter J; Qin, Guangrong; Deng, Xin; Hao, Ziyang; Wawrzak, Zdzislaw; Yeo, Won-Sik; Quang, Jenny Winjing; Cho, Hoonsik; Luo, Guan-Zheng; Weng, Xiaocheng; You, Qiancheng; Luan, Chi-Hao; Yang, Xiaojing; Bae, Taeok; Yu, Kunqian; Jiang, Hualiang; He, Chuan

    2016-03-18

    Most low GC Gram-positive bacteria possess an essential walKR two-component system (TCS) for signal transduction involved in regulating cell wall homoeostasis. Despite the well-established intracellular regulatory mechanism, the role of this TCS in extracellular signal recognition and factors that modulate the activity of this TCS remain largely unknown. Here we identify the extracellular receptor of the kinase 'WalK' (erWalK) as a key hub for bridging extracellular signal input and intracellular kinase activity modulation in Staphylococcus aureus. Characterization of the crystal structure of erWalK revealed a canonical Per-Arnt-Sim (PAS) domain for signal sensing. Single amino-acid mutation of potential signal-transduction residues resulted in severely impaired function of WalKR. A small molecule derived from structure-based virtual screening against erWalK is capable of selectively activating the walKR TCS. The molecular level characterization of erWalK will not only facilitate exploration of natural signal(s) but also provide a template for rational design of erWalK inhibitors.

  18. Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis.

    Science.gov (United States)

    Lavín, José Luis; Binnewies, Tim T; Pisabarro, Antonio G; Ussery, David W; García-Lobo, Juan M; Oguiza, José A

    2010-08-26

    Two-component systems (TCSs) are the predominant bacterial signal transduction mechanisms. Species of the genus Brucella are genetically highly related and differ mainly in mammalian host adaptation and pathogenesis. In this study, TCS proteins encoded in the available genome sequences of Brucella species have been identified using bioinformatic methods. All the Brucella species share an identical set of TCS proteins, and the number of TCS proteins in the closely related opportunistic human pathogen Ochrobactrum anthropi was higher than in Brucella species as expected from its lifestyle. O. anthropi lacks orthologs of the Brucella TCSs NodVW, TceSR and TcfSR, suggesting that these TCS proteins could be necessary for the adaptation of Brucella as an intracellular pathogen. This genomic analysis revealed the presence of a differential distribution of TCS pseudogenes among Brucella species. Moreover, there were also differences in TCS pseudogenes between strains belonging to the same Brucella species, and in particular between B. suis biovars 1 and 2. Copyright 2010 Elsevier B.V. All rights reserved.

  19. Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm.

    Science.gov (United States)

    Kyriakidis, Dimitrios A; Tiligada, Ekaterini

    2009-09-01

    Adaptive signal transduction within microbial cells involves a multi-faceted regulated phosphotransfer mechanism that comprises structural rearrangements of sensor histidine kinases upon ligand-binding and phosphorylation-induced conformational changes in response regulators of versatile two-component systems (TCS), arisen early in bacterial evolution. In Escherichia coli, cross-talk between the AtoS histidine kinase and the AtoC response regulator, forming the AtoSC TCS, through His --> Asp phosphotransfer, activates AtoC directly to induce atoDAEB operon expression, thus modulating diverse fundamental cellular processes such as short-chain fatty acid catabolism, poly-(R)-3-hydroxybutyrate biosynthesis and chemotaxis. Among the inducers hitherto identified, acetoacetate is the classical activator. The AtoSC TCS functional modulation by polyamines, histamine and Ca(2+), as well as the role of AtoC as transcriptional regulator, add new promising perspectives in the physiological significance and potential pharmacological exploitation of this TCS in cell proliferation, bacteria-host interactions, chemotaxis, and adaptation.

  20. Two-component signal transduction in Synechocystis sp. PCC 6803 under phosphate limitation: role of acetyl phosphate.

    Science.gov (United States)

    Juntarajumnong, Waraporn; Eaton-Rye, Julian J; Incharoensakdi, Aran

    2007-09-30

    The two-component signal transduction, which typically consists of a histidine kinase and a response regulator, is used by bacterial cells to sense changes in their environment. Previously, the SphS-SphR histidine kinase and response regulator pair of phosphate sensing signal transduction has been identified in Synechocystis sp. PCC 6803. In addition, some response regulators in bacteria have been shown to be cross regulated by low molecular weight phosphorylated compounds in the absence of the cognate histidine kinase. The ability of an endogenous acetyl phosphate to phosphorylate the response regulator, SphR in the absence of the cognate histidine kinase, SphS was therefore tested in Synechocystis sp. PCC 6803. The mutant lacking functional SphS and acetate kinase showed no detectable alkaline phosphatase activity under phosphate-limiting growth conditions. The results suggested that the endogenous acetyl phosphate accumulated inside the mutants could not activate the SphR via phosphorylation. On the other hand, exogenous acetyl phosphate could allow the mutant lacking functional acetate kinase and phosphotransacetylase to grow under phosphate-limiting conditions suggesting the role of acetyl phosphate as an energy source. Reverse transcription PCR demonstrated that the transcripts of acetate kinase and phosphotransacetylase genes in Synechocystis sp. PCC 6803 is upregulated in response to phosphate limitation suggesting the importance of these two enzymes for energy metabolism in Synechocystis cells.

  1. Analysis of protein expression regulated by the Helicobacter pylori ArsRS two-component signal transduction system.

    Science.gov (United States)

    Loh, John T; Gupta, Shobhana S; Friedman, David B; Krezel, Andrzej M; Cover, Timothy L

    2010-04-01

    Previous studies have shown that the Helicobacter pylori ArsRS two-component signal transduction system contributes to acid-responsive gene expression. To identify additional members of the ArsRS regulon and further investigate the regulatory role of the ArsRS system, we analyzed protein expression in wild-type and arsS null mutant strains. Numerous proteins were differentially expressed in an arsS mutant strain compared to a wild-type strain when the bacteria were cultured at pH 5.0 and also when they were cultured at pH 7.0. Genes encoding 14 of these proteins were directly regulated by the ArsRS system, based on observed binding of ArsR to the relevant promoter regions. The ArsRS-regulated proteins identified in this study contribute to acid resistance (urease and amidase), acetone metabolism (acetone carboxylase), resistance to oxidative stress (thioredoxin reductase), quorum sensing (Pfs), and several other functions. These results provide further definition of the ArsRS regulon and underscore the importance of the ArsRS system in regulating expression of H. pylori proteins during bacterial growth at both neutral pH and acidic pH.

  2. The two-component signal transduction system YvcPQ regulates the bacterial resistance to bacitracin in Bacillus thuringiensis.

    Science.gov (United States)

    Zhang, Shumeng; Li, Xinfeng; Wang, Xun; Li, Zhou; He, Jin

    2016-10-01

    YvcPQ is one of the two-component signal transduction systems that respond to specific stimuli and enable cells to adjust multiple cellular functions. It consists of a histidine kinase YvcQ and a response regulator YvcP. In this study, through searching the consensus sequence recognized by YvcP, we found four YvcP-binding motifs in the promoter regions of genes yvcR (BMB171_C4100), BMB171_C4385, kapD (BMB171_C4525) and BMB171_C4835 in Bacillus thuringiensis BMB171 which is a representative of Bacillus cereus group, and confirmed that these genes are regulated by YvcP. We compared the sequence of yvcPQ and its downstream genes in genus Bacillus, and found two different kinds of yvc locus, one was the yvcPQ-RS in B. subtilis species and the other was the yvcPQ-R-S1S2 in B. cereus group. Furthermore, we found that YvcP activates the transcription of yvcS1S2 (downstream of yvcR) to promote bacterial resistance to bacitracin and deletion of either yvcPQ operon or yvcS1S2 operon renders the bacterial cells more sensitive to bacitracin. This study enriched our understanding of both the YvcPQ's function and the mechanism of bacterial resistance to bacitracin.

  3. STAC--A New Domain Associated with Transmembrane Solute Transport and Two-Component Signal Transduction Systems.

    Science.gov (United States)

    Korycinski, Mateusz; Albrecht, Reinhard; Ursinus, Astrid; Hartmann, Marcus D; Coles, Murray; Martin, Jörg; Dunin-Horkawicz, Stanislaw; Lupas, Andrei N

    2015-10-09

    Transmembrane receptors are integral components of sensory pathways in prokaryotes. These receptors share a common dimeric architecture, consisting in its basic form of an N-terminal extracellular sensor, transmembrane helices, and an intracellular effector. As an exception, we have identified an archaeal receptor family--exemplified by Af1503 from Archaeoglobus fulgidus--that is C-terminally shortened, lacking a recognizable effector module. Instead, a HAMP domain forms the sole extension for signal transduction in the cytosol. Here, we examine the gene environment of Af1503-like receptors and find a frequent association with transmembrane transport proteins. Furthermore, we identify and define a closely associated new protein domain family, which we characterize structurally using Af1502 from A. fulgidus. Members of this family are found both as stand-alone proteins and as domains within extant receptors. In general, the latter appear as connectors between the solute carrier 5 (SLC5)-like transmembrane domains and two-component signal transduction (TCST) domains. This is seen, for example, in the histidine kinase CbrA, which is a global regulator of metabolism, virulence, and antibiotic resistance in Pseudomonads. We propose that this newly identified domain family mediates signal transduction in systems regulating transport processes and name it STAC, for SLC and TCST-Associated Component. Copyright © 2015 MRC Laboratory of Molecular Biology. Published by Elsevier Ltd.. All rights reserved.

  4. Phosphorescence lifetimes of organic light-emitting diodes from two-component time-dependent density functional theory

    Energy Technology Data Exchange (ETDEWEB)

    Kühn, Michael [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Weigend, Florian, E-mail: florian.weigend@kit.edu [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Institut für Nanotechnologie, Karlsruher Institut für Technologie, Postfach 3640, 76021 Karlsruhe (Germany)

    2014-12-14

    “Spin-forbidden” transitions are calculated for an eight-membered set of iridium-containing candidate molecules for organic light-emitting diodes (OLEDs) using two-component time-dependent density functional theory. Phosphorescence lifetimes (obtained from averaging over relevant excitations) are compared to experimental data. Assessment of parameters like non-distorted and distorted geometric structures, density functionals, relativistic Hamiltonians, and basis sets was done by a thorough study for Ir(ppy){sub 3} focussing not only on averaged phosphorescence lifetimes, but also on the agreement of the triplet substate structure with experimental data. The most favorable methods were applied to an eight-membered test set of OLED candidate molecules; Boltzmann-averaged phosphorescence lifetimes were investigated concerning the convergence with the number of excited states and the changes when including solvent effects. Finally, a simple model for sorting out molecules with long averaged phosphorescence lifetimes is developed by visual inspection of computationally easily achievable one-component frontier orbitals.

  5. Laplace-transformed atomic orbital-based M{\\o}ller-Plesset perturbation theory for relativistic two-component Hamiltonians

    CERN Document Server

    Helmich-Paris, Benjamin; Visscher, Lucas

    2016-01-01

    We present a formulation of Laplace-transformed atomic orbital-based second-order M{\\o}ller-Plesset perturbation theory (MP2) energies for two-component Hamiltonians in the Kramers-restricted formalism. This low-order scaling technique can be used to enable correlated relativistic calculations for large molecular systems. We show that the working equations to compute the relativistic MP2 energy differ by merely a change of algebra (quaternion instead of real) from their non-relativistic counterparts. With a proof-of-principle implementation we study the effect of the nuclear charge on the magnitude of half-transformed integrals and show that for light elements spin-free and spin-orbit MP2 energies are almost identical. Furthermore, we investigate the effect of separation of charge distributions on the Coulomb and exchange energy con- tributions, which show the same long-range decay with the inter-electronic / atomic distance as for non-relativistic MP2. A linearly scaling implementation is possible if the pro...

  6. MECHANICAL RELAXATION TIME OF A TWO-COMPONENT EPOXY NETWORK-LiClO4 POLYMER ELECTROLYTE

    Institute of Scientific and Technical Information of China (English)

    PENG Xinsheng; WU Shuyun; CHEN Donglin

    1993-01-01

    The mechanical relaxation time of a two-component epoxy network-LiClO4 system as a polymer electrolyte was investigated.The network is composed of diglycidyl ether of polyethylene glycol (DGEPEG) and triglycidyl ether of glycerol (TGEG),wherein LiClO4 was incorporated and acts as both the ionic carrier and the curing catalyst.As the relaxation time is informative to the segmental mobility,which is known to be essential for ionic conductivity,the average relaxation times of the specimens were determined through master curve construction.Experimental results showed that the salt concentration,molecular weight of PEG in DGEPEG and DGEPEG/TGEG ratio have profound effect on the relaxation time of the specimen.Among these factors,the former reinforces the network hains,leading to lengthen the relaxation time,whereas the latter two are in favour of the chain flexibility and show an opposite effect.The findings was rationalized in terms of the free volume concept.

  7. A two-component histidine kinase Shk1 controls stress response, sclerotial formation and fungicide resistance in Sclerotinia sclerotiorum.

    Science.gov (United States)

    Duan, Yabing; Ge, Changyan; Liu, Shengming; Wang, Jianxin; Zhou, Mingguo

    2013-09-01

    Fungal histidine kinases (HKs) are involved in osmotic and oxidative stress responses, hyphal development, fungicide sensitivity and virulence. Members of HK class III are known to signal through the high-osmolarity glycerol mitogen-activated protein kinase (HOG MAPK). In this study, we characterized the Shk1 gene (SS1G_12694.3), which encodes a putative class III HK, from the plant pathogen Sclerotinia sclerotiorum. Disruption of Shk1 resulted in resistance to phenylpyrrole and dicarboximide fungicides and increased sensitivity to hyperosmotic stress and H2 O2 -induced oxidative stress. The Shk1 mutant showed a significant reduction in vegetative hyphal growth and was unable to produce sclerotia. Quantitative real-time polymerase chain reaction (qRT-PCR and glycerol determination assays showed that the expression of SsHOG1 (the last kinase of the Hog pathway) and glycerol accumulation were regulated by the Shk1 gene, but PAK (p21-activated kinase) was not. In addition, the Shk1 mutant showed no change in virulence. All the defects were restored by genetic complementation of the Shk1 deletion mutant with the wild-type Shk1 gene. These findings indicate that Shk1 is involved in vegetative differentiation, sclerotial formation, glycerol accumulation and adaption to hyperosmotic and oxidative stresses, and to fungicides, in S. sclerotiorum. Taken together, our results demonstrate, for the first time, the role of two-component HKs in Sclerotinia.

  8. Promoter Escape with Bacterial Two-component σ Factor Suggests Retention of σ Region Two in the Elongation Complex.

    Science.gov (United States)

    Sengupta, Shreya; Prajapati, Ranjit Kumar; Mukhopadhyay, Jayanta

    2015-11-20

    The transition from the formation of the RNA polymerase (RNAP)-promoter open complex step to the productive elongation complex step involves "promoter escape" of RNAP. From the structure of RNAP, a promoter escape model has been proposed that suggests that the interactions between σR4 and RNAP and σR4 and DNA are destabilized upon transition to elongation. This accounts for the reduced affinity of σ to RNAP and stochastic release of σ. However, as the loss of interaction of σR4 with RNAP results in the release of intact σ, assessing this interaction remains challenging to be experimentally verified. Here we study the promoter escape model using a two-component σ factor YvrI and YvrHa from Bacillus subtilis that independently contributes to the functions of σR4 and σR2 in a RNAP-promoter complex. Our results show that YvrI, which mimics σR4, is released gradually as transcription elongation proceeds, whereas YvrHa, which mimics σR2 is retained throughout the elongation complexes. Thus our result validates the proposed model for promoter escape and also suggests that promoter escape involves little or no change in the interaction of σR2 with RNAP.

  9. Two-component laser Doppler anemometer for measurement of velocity and turbulent shear stress near prosthetic heart valves.

    Science.gov (United States)

    Woo, Y R; Yoganathan, A P

    1985-01-01

    The velocity and turbulent shear stress measured in the immediate vicinity of prosthetic heart valves play a vital role in the design and evaluation of these devices. In the past hot wire/film and one-component laser Doppler anemometer (LDA) systems were used extensively to obtain these measurements. Hot wire/film anemometers, however, have some serious disadvantages, including the inability to measure the direction of the flow, the disturbance of the flow field caused by the probe, and the need for frequent calibration. One-component LDA systems do not have these problems, but they cannot measure turbulent shear stresses directly. Since these measurements are essential and are not available in the open literature, a two-component LDA system for measuring velocity and turbulent shear stress fields under pulsatile flow conditions was assembled under an FDA contract. The experimental methods used to create an in vitro data base of velocity and turbulent shear stress fields in the immediate vicinity of prosthetic heart valves of various designs in current clinical use are also discussed.

  10. Functionalization of PDMS modified and plasma activated two-component polyurethane coatings by surface attachment of enzymes

    Science.gov (United States)

    Kreider, Alexej; Richter, Katharina; Sell, Stephan; Fenske, Mandus; Tornow, Christian; Stenzel, Volkmar; Grunwald, Ingo

    2013-05-01

    This article describes a new strategy for coupling the enzyme horseradish peroxidase to a two-component polyurethane (2C-PUR) coating. A stable polymer conjugate was achieved by combining the enzyme and the 2C-PUR coating which was modified with poly(dimethylsiloxane) (PDMS), located at the surface. An atmospheric pressure plasma jet system was used to convert alkyl groups from the PDMS into polar silanol functionalities. This conversion was proven by X-ray photoelectron spectroscopy and dynamic contact angle measurements. In addition, the stability of the activated 2C-PUR surface containing silanol groups was determined by measuring the contact angle as a function of time. Compared to the non-modified 2C-PUR systems the one with PDMS displayed a higher stability over a time period over 28 h. In a silanization process the coating was treated with (3-aminopropyl) trimethoxysilane and the enzyme was subsequently immobilized to the coating via the cross linker glutaraldehyde to receive new biomimetic catalytic/enzymatic functions. The chemical immobilization (chemisorption) of the enzyme to the surface showed statistically significant higher biological activity as compared to references samples without using a cross linker (physisorption). The presented technique offers the opportunity to design new and smart multifunctional surface coatings which employ biomimetic capabilities.

  11. Functionalization of PDMS modified and plasma activated two-component polyurethane coatings by surface attachment of enzymes

    Energy Technology Data Exchange (ETDEWEB)

    Kreider, Alexej; Richter, Katharina; Sell, Stephan; Fenske, Mandus; Tornow, Christian; Stenzel, Volkmar [Fraunhofer Institute for Manufacturing Technology and Advanced Materials - IFAM, Wiener Strasse 12, 28359 Bremen (Germany); Grunwald, Ingo, E-mail: ingo.grunwald@ifam.fraunhofer.de [Fraunhofer Institute for Manufacturing Technology and Advanced Materials - IFAM, Wiener Strasse 12, 28359 Bremen (Germany)

    2013-05-15

    This article describes a new strategy for coupling the enzyme horseradish peroxidase to a two-component polyurethane (2C-PUR) coating. A stable polymer conjugate was achieved by combining the enzyme and the 2C-PUR coating which was modified with poly(dimethylsiloxane) (PDMS), located at the surface. An atmospheric pressure plasma jet system was used to convert alkyl groups from the PDMS into polar silanol functionalities. This conversion was proven by X-ray photoelectron spectroscopy and dynamic contact angle measurements. In addition, the stability of the activated 2C-PUR surface containing silanol groups was determined by measuring the contact angle as a function of time. Compared to the non-modified 2C-PUR systems the one with PDMS displayed a higher stability over a time period over 28 h. In a silanization process the coating was treated with (3-aminopropyl) trimethoxysilane and the enzyme was subsequently immobilized to the coating via the cross linker glutaraldehyde to receive new biomimetic catalytic/enzymatic functions. The chemical immobilization (chemisorption) of the enzyme to the surface showed statistically significant higher biological activity as compared to references samples without using a cross linker (physisorption). The presented technique offers the opportunity to design new and smart multifunctional surface coatings which employ biomimetic capabilities.

  12. The GacS-GacA two-component regulatory system of Pseudomonas fluorescens: a bacterial two-hybrid analysis.

    Science.gov (United States)

    Workentine, Matthew L; Chang, Limei; Ceri, Howard; Turner, Raymond J

    2009-03-01

    The two-component regulatory system comprised of the sensor kinase, GacS, and its response regulator, GacA, is involved in regulation of secondary metabolism and many other aspects of bacterial physiology. Although it is known that the sensor kinases RetS and LadS feed into the GacS/GacA system, the mechanism through which this occurs is unknown, as are the protein-protein interactions in this system. To characterize and define these interactions, we utilized a bacterial two-hybrid system to study the interactions of GacS and GacA from Pseudomonas fluorescens CHA0. Domains of GacA and GacS, identified through bioinformatics, were subcloned and their ability to interact in vivo was investigated. We found that the entire GacA molecule is required for GacA to interact with itself or GacS. Furthermore, the HisKA/HATPase/REC domains of GacS together are responsible for GacS interacting with GacA, while the HAMP domain of GacS is responsible for GacS interacting with itself. In addition, homologs of Pseudomonas aeruginosa hybrid sensor kinases, RetS and LadS, were identified in P. fluorescens, and shown to interact with GacS, but not GacA.

  13. Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system.

    Directory of Open Access Journals (Sweden)

    Ana M Tomljenovic-Berube

    2010-03-01

    Full Text Available Sequence data from the past decade has laid bare the significance of horizontal gene transfer in creating genetic diversity in the bacterial world. Regulatory evolution, in which non-coding DNA is mutated to create new regulatory nodes, also contributes to this diversity to allow niche adaptation and the evolution of pathogenesis. To survive in the host environment, Salmonella enterica uses a type III secretion system and effector proteins, which are activated by the SsrA-SsrB two-component system in response to the host environment. To better understand the phenomenon of regulatory evolution in S. enterica, we defined the SsrB regulon and asked how this transcription factor interacts with the cis-regulatory region of target genes. Using ChIP-on-chip, cDNA hybridization, and comparative genomics analyses, we describe the SsrB-dependent regulon of ancestral and horizontally acquired genes. Further, we used a genetic screen and computational analyses integrating experimental data from S. enterica and sequence data from an orthologous regulatory system in the insect endosymbiont, Sodalis glossinidius, to identify the conserved yet flexible palindrome sequence that defines DNA recognition by SsrB. Mutational analysis of a representative promoter validated this palindrome as the minimal architecture needed for regulatory input by SsrB. These data provide a high-resolution map of a regulatory network and the underlying logic enabling pathogen adaptation to a host.

  14. Images and spectral properties of two-component advective flows around black holes: effects of photon bending

    Science.gov (United States)

    Chatterjee, Arka; Chakrabarti, Sandip K.; Ghosh, Himadri

    2017-03-01

    Two-component advective flow (TCAF) successfully explains spectral and timing properties of black hole candidates. We study the nature of photon trajectories in the vicinity of a Schwarzschild black hole and incorporate this in predicting images of TCAF with a black hole at the Centre. We also compute the emitted spectra. We employ a Monte Carlo simulation technique to achieve our goal. For accurate prediction of the image and the spectra, null trajectories are generated without constraining the motion to any specific plane. Redshift, bolometric flux and corresponding temperature have been calculated with appropriate relativistic consideration. The CENtrifugal pressure supported BOundary Layer or CENBOL near the inner region of the disc, which acts as the Compton cloud, is appropriately modelled as a thick accretion disc in Schwarzschild geometry for the purpose of imaging and computing spectra. The variations of spectra and image with physical parameters such as the accretion rate (dot{m}_d) and inclination angle are presented. We show that the gravitational bending effects of photons do change the spectral shape to some extent.

  15. A hybrid two-component system of Tannerella forsythia affects autoaggregation and post-translational modification of surface proteins.

    Science.gov (United States)

    Niwa, Daisuke; Nishikawa, Kiyoshi; Nakamura, Hiroshi

    2011-05-01

    Tannerella forsythia is a Gram-negative oral anaerobe closely associated with both periodontal and periapical diseases. The ORF TF0022 of strain ATCC 43037 encodes a hybrid two-component system consisting of an N-terminal histidine kinase and a C-terminal response regulator. Disruption of the TF0022 locus enhanced autoaggregation of the broth-cultured cells. Comparative proteome analyses revealed that two S-layer proteins in the TF0022 mutant exhibited decreased apparent masses by denaturing gel electrophoresis, suggesting a deficiency in post-translational modification. Furthermore, the mutant decreased the production of a glycosyltransferase encoded by TF1061 that is located in a putative glycosylation-related gene cluster. Quantitative real-time PCR revealed reduced transcription of TF1061 and the associated genes in the TF0022 mutant. These results indicate that TF0022 upregulates the expression of the glycosylation-related genes and suggest modulation of the autoaggregation of T. forsythia cells by a possible post-translational modification of cell-surface components.

  16. Preparation and properties of high storage stability polyester polyol dispersion for two-component waterborne polyurethane coating

    Science.gov (United States)

    Hao, H.; Hu, J. Q.; Wang, F.; Tu, W. P.

    2017-01-01

    A new type of polyester polyol dispersion with good storage stability was prepared based on a hydrophilic monomer 5-sodium sulfodimethyl isophthalate (5-SIPM), and frequently-used monomers such as neopentyl glycol (NPG), dimethyl terephthalate (DMT), dimethyl phthalate (DMP) and trimethylolpropane (TMP) by the transpolycondensation and polycondensation method. The polyester polyol dispersion was characterized by FTIR and GPC. The proper content of these monomers were determined by the performance of polyester dispersion: the content of TMP was 15wt%, the content of NPG was 7.5wt% and the hydrophilic monomer 5-SIPM content was 5wt%. Two-component waterborne polyurethane (2K-WPU) coatings were prepared by Bayhydur® XP2487/1 and polyester polyol dispersions, which were stored before and after at 40 ° for 6 weeks, the prepared films have no differences in drying time, adhesion, pencil hardness, gloss and chemical resistance, the result also reveals that the polyester polyol dispersion have excellent storage stability resistance.

  17. PhoR/PhoP two component regulatory system affects biocontrol capability of Bacillus subtilis NCD-2

    Directory of Open Access Journals (Sweden)

    Qinggang Guo

    2010-01-01

    Full Text Available The Bacillus subtilis strain NCD-2 is an important biocontrol agent against cotton verticillium wilt and cotton sore shin in the field, which are caused by Verticillium dahliae Kleb and Rhizoctonia solani Kuhn, respectively. A mutant of strain NCD-2, designated M216, with decreased antagonism to V. dahliae and R. solani, was selected by mini-Tn10 mutagenesis and in vitro virulence screening. The inserted gene in the mutant was cloned and identified as the phoR gene, which encodes a sensor kinase in the PhoP/PhoR two-component system. Compared to the wild-type strain, the APase activities of the mutant was decreased significantly when cultured in low phosphate medium, but no obvious difference was observed when cultured in high phosphate medium. The mutant also grew more slowly on organic phosphate agar and lost its phosphatidylcholine-solubilizing ability. The suppression of cotton seedling damping-off in vivo and colonization of the rhizosphere of cotton also decreased in the mutant strain when compared with the wild type strain. All of these characteristics could be partially restored by complementation of the phoR gene in the M216 mutant.

  18. PhoR/PhoP two component regulatory system affects biocontrol capability of Bacillus subtilis NCD-2.

    Science.gov (United States)

    Guo, Qinggang; Li, Shezeng; Lu, Xiuyun; Li, Baoqing; Ma, Ping

    2010-04-01

    The Bacillus subtilis strain NCD-2 is an important biocontrol agent against cotton verticillium wilt and cotton sore shin in the field, which are caused by Verticillium dahliae Kleb and Rhizoctonia solani Kuhn, respectively. A mutant of strain NCD-2, designated M216, with decreased antagonism to V. dahliae and R. solani, was selected by mini-Tn10 mutagenesis and in vitro virulence screening. The inserted gene in the mutant was cloned and identified as the phoR gene, which encodes a sensor kinase in the PhoP/PhoR two-component system. Compared to the wild-type strain, the APase activities of the mutant was decreased significantly when cultured in low phosphate medium, but no obvious difference was observed when cultured in high phosphate medium. The mutant also grew more slowly on organic phosphate agar and lost its phosphatidylcholine-solubilizing ability. The suppression of cotton seedling damping-off in vivo and colonization of the rhizosphere of cotton also decreased in the mutant strain when compared with the wild type strain. All of these characteristics could be partially restored by complementation of the phoR gene in the M216 mutant.

  19. Condition Number Regularized Covariance Estimation.

    Science.gov (United States)

    Won, Joong-Ho; Lim, Johan; Kim, Seung-Jean; Rajaratnam, Bala

    2013-06-01

    Estimation of high-dimensional covariance matrices is known to be a difficult problem, has many applications, and is of current interest to the larger statistics community. In many applications including so-called the "large p small n" setting, the estimate of the covariance matrix is required to be not only invertible, but also well-conditioned. Although many regularization schemes attempt to do this, none of them address the ill-conditioning problem directly. In this paper, we propose a maximum likelihood approach, with the direct goal of obtaining a well-conditioned estimator. No sparsity assumption on either the covariance matrix or its inverse are are imposed, thus making our procedure more widely applicable. We demonstrate that the proposed regularization scheme is computationally efficient, yields a type of Steinian shrinkage estimator, and has a natural Bayesian interpretation. We investigate the theoretical properties of the regularized covariance estimator comprehensively, including its regularization path, and proceed to develop an approach that adaptively determines the level of regularization that is required. Finally, we demonstrate the performance of the regularized estimator in decision-theoretic comparisons and in the financial portfolio optimization setting. The proposed approach has desirable properties, and can serve as a competitive procedure, especially when the sample size is small and when a well-conditioned estimator is required.

  20. Condition Number Regularized Covariance Estimation*

    Science.gov (United States)

    Won, Joong-Ho; Lim, Johan; Kim, Seung-Jean; Rajaratnam, Bala

    2012-01-01

    Estimation of high-dimensional covariance matrices is known to be a difficult problem, has many applications, and is of current interest to the larger statistics community. In many applications including so-called the “large p small n” setting, the estimate of the covariance matrix is required to be not only invertible, but also well-conditioned. Although many regularization schemes attempt to do this, none of them address the ill-conditioning problem directly. In this paper, we propose a maximum likelihood approach, with the direct goal of obtaining a well-conditioned estimator. No sparsity assumption on either the covariance matrix or its inverse are are imposed, thus making our procedure more widely applicable. We demonstrate that the proposed regularization scheme is computationally efficient, yields a type of Steinian shrinkage estimator, and has a natural Bayesian interpretation. We investigate the theoretical properties of the regularized covariance estimator comprehensively, including its regularization path, and proceed to develop an approach that adaptively determines the level of regularization that is required. Finally, we demonstrate the performance of the regularized estimator in decision-theoretic comparisons and in the financial portfolio optimization setting. The proposed approach has desirable properties, and can serve as a competitive procedure, especially when the sample size is small and when a well-conditioned estimator is required. PMID:23730197