Two-component Abelian sandpile models.
Alcaraz, F C; Pyatov, P; Rittenberg, V
2009-04-01
In one-component Abelian sandpile models, the toppling probabilities are independent quantities. This is not the case in multicomponent models. The condition of associativity of the underlying Abelian algebras imposes nonlinear relations among the toppling probabilities. These relations are derived for the case of two-component quadratic Abelian algebras. We show that Abelian sandpile models with two conservation laws have only trivial avalanches.
Two-component model of solar plages
Institute of Scientific and Technical Information of China (English)
LI; Jianping(李建平); DING; Mingde(丁明德); FANG; Cheng(方成)
2002-01-01
By use of the 2-m Mcmath-Pierce telescope at Kitt Peak, the high-quality spectra of a plage with moderate brightness near the center of solar disk were obtained. The data include seven spectral lines, which are Hα, Hβ, CaII H and K lines and the infrared triplet. With the consideration of fine structures of solar plages, a two-component atmospheric model is constructed by keeping the cool component to be the quiet atmosphere. Three cases of the hot component are given for different filling factors where the temperature and density distribution are adjusted in order to reproduce the seven observed spectral profiles. We also briefly discuss the influence of the column density at the base of the corona, m0, and the macro-turbulent velocity on the required filling factor and computed profiles. The two-component model is compared with precious one-component semi-empirical models. The limitation of the model is pointed out and further improvement is indicated.
A polaritonic two-component Bose-Hubbard model
Energy Technology Data Exchange (ETDEWEB)
Hartmann, M J; Brandao, F G S L; Plenio, M B [Institute for Mathematical Sciences, Imperial College London, 53 Exhibition Road, SW7 2PE (United Kingdom)], E-mail: m.hartmann@imperial.ac.uk
2008-03-15
We demonstrate that polaritons in an array of interacting micro-cavities with strong atom-photon coupling can form a two-component Bose-Hubbard model in which both polariton species are protected against spontaneous emission as their atomic part is stored in two ground states of the atoms. The parameters of the effective model can be tuned via the driving strength of external lasers and include attractive and repulsive polariton interactions. We also describe a method to measure the number statistics in one cavity for each polariton species independently.
A minimal model for two-component dark matter
Energy Technology Data Exchange (ETDEWEB)
Esch, Sonja; Klasen, Michael; Yaguna, Carlos E. [Institut fuer theoretische Physik, Universitaet Muenster, Wilhelm-Klemm-Strasse 9,D-48149 Muenster (Germany)
2015-07-01
We propose and study a new minimal model for two-component dark matter. The model contains only three additional fields, one fermion and two scalars, all singlets under the Standard Model gauge group. Two of these fields, one fermion and one scalar, are odd under a Z{sub 2} symmetry that renders them simultaneously stable. Thus, both particles contribute to the observed dark matter density. This model resembles the union of the singlet scalar and the singlet fermionic models but it contains some new features of its own. We analyze in some detail its dark matter phenomenology. Regarding the relic density, the main novelty is the possible annihilation of one dark matter particle into the other, which can affect the predicted relic density in a significant way. Regarding dark matter detection, we identify a new contribution that can lead either to an enhancement or to a suppression of the spin-independent cross section for the scalar dark matter particle. Finally, we define a set of five benchmarks models compatible with all present bounds and examine their direct detection prospects at planned experiments. A generic feature of this model is that both particles give rise to observable signals in 1-ton direct detection experiments. In fact, such experiments will be able to probe even a subdominant dark matter component at the percent level.
A minimal model for two-component dark matter
Esch, Sonja; Klasen, Michael; Yaguna, Carlos E.
2014-09-01
We propose and study a new minimal model for two-component dark matter. The model contains only three additional fields, one fermion and two scalars, all singlets under the Standard Model gauge group. Two of these fields, one fermion and one scalar, are odd under a Z 2 symmetry that renders them simultaneously stable. Thus, both particles contribute to the observed dark matter density. This model resembles the union of the singlet scalar and the singlet fermionic models but it contains some new features of its own. We analyze in some detail its dark matter phenomenology. Regarding the relic density, the main novelty is the possible annihilation of one dark matter particle into the other, which can affect the predicted relic density in a significant way. Regarding dark matter detection, we identify a new contribution that can lead either to an enhancement or to a suppression of the spin-independent cross section for the scalar dark matter particle. Finally, we define a set of five benchmarks models compatible with all present bounds and examine their direct detection prospects at planned experiments. A generic feature of this model is that both particles give rise to observable signals in 1-ton direct detection experiments. In fact, such experiments will be able to probe even a subdominant dark matter component at the percent level.
A minimal model for two-component dark matter
Esch, Sonja; Yaguna, Carlos E
2014-01-01
We propose and study a new minimal model for two-component dark matter. The model contains only three additional fields, one fermion and two scalars, all singlets under the Standard Model gauge group. Two of these fields, one fermion and one scalar, are odd under a $Z_2$ symmetry that renders them simultaneously stable. Thus, both particles contribute to the observed dark matter density. This model resembles the union of the singlet scalar and the singlet fermionic models but it contains some new features of its own. We analyze in some detail its dark matter phenomenology. Regarding the relic density, the main novelty is the possible annihilation of one dark matter particle into the other, which can affect the predicted relic density in a significant way. Regarding dark matter detection, we identify a new contribution that can lead either to an enhancement or to a suppression of the spin-independent cross section for the scalar dark matter particle. Finally, we define a set of five benchmarks models compatibl...
Two-component model of the interaction of an interstellar cloud with surrounding hot plasma
Provornikova, E. A.; Izmodenov, V. V.; Lallement, R.
2011-01-01
We present a two-component gasdynamic model of an interstellar cloud embedded in a hot plasma. It is assumed that the cloud consists of atomic hydrogen gas, interstellar plasma is quasineutral. Hydrogen atoms and plasma protons interact through a charge exchange process. Magnetic felds and radiative processes are ignored in the model. The influence of heat conduction within plasma on the interaction between a cloud and plasma is studied. We consider the extreme case and assume that hot plasma...
Transport of Solar Wind Fluctuations: A Two-Component Model
Oughton, S.; Matthaeus, W. H.; Smith, C. W.; Breech, B.; Isenberg, P. A.
2011-01-01
We present a new model for the transport of solar wind fluctuations which treats them as two interacting incompressible components: quasi-two-dimensional turbulence and a wave-like piece. Quantities solved for include the energy, cross helicity, and characteristic transverse length scale of each component, plus the proton temperature. The development of the model is outlined and numerical solutions are compared with spacecraft observations. Compared to previous single-component models, this new model incorporates a more physically realistic treatment of fluctuations induced by pickup ions and yields improved agreement with observed values of the correlation length, while maintaining good observational accord with the energy, cross helicity, and temperature.
Two-component model of the interaction of an interstellar cloud with surrounding hot plasma
Provornikova, E A; Lallement, R
2011-01-01
We present a two-component gasdynamic model of an interstellar cloud embedded in a hot plasma. It is assumed that the cloud consists of atomic hydrogen gas, interstellar plasma is quasineutral. Hydrogen atoms and plasma protons interact through a charge exchange process. Magnetic felds and radiative processes are ignored in the model. The influence of heat conduction within plasma on the interaction between a cloud and plasma is studied. We consider the extreme case and assume that hot plasma electrons instantly heat the plasma in the interaction region and that plasma flow can be described as isothermal. Using the two-component model of the interaction of cold neutral cloud and hot plasma, we estimate the lifetime of interstellar clouds. We focus on the clouds typical for the cluster of local interstellar clouds embedded in the hot Local Bubble and give an estimate of the lifetime of the Local interstellar cloud where the Sun currently travels. The charge transfer between highly charged plasma ions and neutr...
Dou, Mei; Zhang, Qiong; Meng, Yang; Li, Jing; Lu, Yiming; Zhu, Kaiguang
2017-01-01
Conductivity-depth imaging (CDI) of data is generally applied in identifying conductive targets. CDI results will be affected by the bird attitude especially the pitch of the receiver coil due to the attitude, velocity of the aircraft and the wind speed. A CDI algorithm with consideration of pitch is developed based on two-component measurement. A table is established based on two-component B field response and the pitch is considered as a parameter in the table. Primary advantages of this method are immunity to pith errors and better resolution of conductive layers than results without consideration of pith. Not only the conductivity but also the pitch can be obtained from this algorithm. Tests on synthetic data demonstrate that the CDI results with pitch based on two-component measurement does a better job than the results without consideration of pitch and the pitch obtained is close to the true model in many circumstances.
Travelling wave solutions for some two-component shallow water models
Dutykh, Denys; Ionescu-Kruse, Delia
2016-07-01
In the present study we perform a unified analysis of travelling wave solutions to three different two-component systems which appear in shallow water theory. Namely, we analyze the celebrated Green-Naghdi equations, the integrable two-component Camassa-Holm equations and a new two-component system of Green-Naghdi type. In particular, we are interested in solitary and cnoidal-type solutions, as two most important classes of travelling waves that we encounter in applications. We provide a complete phase-plane analysis of all possible travelling wave solutions which may arise in these models. In particular, we show the existence of new type of solutions.
VISCOELASTICITY AND IONIC CONDUCTIVITY OF TWO-COMPONENT EPOXY NETWORK CONTAINING LITHIUM PERCHLORATE
Institute of Scientific and Technical Information of China (English)
PENG Xinsheng; BA Hengfei; QIAO Ziwen; CHEN Donglin; WANG Fosong
1991-01-01
Polymeric solid electrolyte system composed of triglycidyl ether of glycerol (TGEG), diglycidyl ether of polyethylene glycol (DGEPEG)and LiClO4 salt were synthesized. In this system the electrolyte has a pecularity that not merely can the LiClO4 provide ionic carriers, but also catalyze the crosslinking reaction without adding an usual curing agent. The effect of salt content and degree of crosslinking on the viscoelasticity and ionic conductivity were studied. Both WLF and VTF equations were used to treat the experimental data in order to elucidate the mechanism of ionic conduction. It was found that the ionic conductivity of the system is carried out through the segmental motion mechanism. However, the data must be treated with care. For example, in evaluating WLF parameters, the contribution concerned with ionic carrier generation with temperature to the conductivity must be differentiated from that concerned with segmental motion. Besides, the temperature range suitable to WLF equation must also be considered. For VTF equation, it might be inapplicable if the temperature is too low and close to the glass transition temperature of the specimen. Further study is needed in order to have a quantitative information on the limitation of these equations.
Meisner, Aaron M.; Finkbeiner, Douglas P.
2015-01-01
We apply the Finkbeiner et al. two-component thermal dust emission model to the Planck High Frequency Instrument maps. This parameterization of the far-infrared dust spectrum as the sum of two modified blackbodies (MBBs) serves as an important alternative to the commonly adopted single-MBB dust emission model. Analyzing the joint Planck/DIRBE dust spectrum, we show that two-component models provide a better fit to the 100-3000 GHz emission than do single-MBB models, though by a lesser margin than found by Finkbeiner et al. based on FIRAS and DIRBE. We also derive full-sky 6.'1 resolution maps of dust optical depth and temperature by fitting the two-component model to Planck 217-857 GHz along with DIRBE/IRAS 100 μm data. Because our two-component model matches the dust spectrum near its peak, accounts for the spectrum's flattening at millimeter wavelengths, and specifies dust temperature at 6.'1 FWHM, our model provides reliable, high-resolution thermal dust emission foreground predictions from 100 to 3000 GHz. We find that, in diffuse sky regions, our two-component 100-217 GHz predictions are on average accurate to within 2.2%, while extrapolating the Planck Collaboration et al. single-MBB model systematically underpredicts emission by 18.8% at 100 GHz, 12.6% at 143 GHz, and 7.9% at 217 GHz. We calibrate our two-component optical depth to reddening, and compare with reddening estimates based on stellar spectra. We find the dominant systematic problems in our temperature/reddening maps to be zodiacal light on large angular scales and the cosmic infrared background anisotropy on small angular scales.
Instabilities on crystal surfaces: The two-component body-centered solid-on-solid model
Carlon, E.; van Beijeren, H.; Mazzeo, G.
1996-01-01
The free energy of crystal surfaces that can be described by the two-component body-centered solid-on-solid model has been calculated in a mean-field approximation. The system may model ionic crystals with a bcc lattice structure (for instance CsCl). Crossings between steps are energetically favored
Domain Walls and Textured Vortices in a Two-Component Ginzburg-Landau Model
DEFF Research Database (Denmark)
Madsen, Søren Peder; Gaididei, Yu. B.; Christiansen, Peter Leth
2005-01-01
We look for domain wall and textured vortex solutions in a two-component Ginzburg-Landau model inspired by two-band superconductivity. The two-dimensional two-component model, with equal coherence lengths and no magnetic field, shows some interesting properties. In the absence of a Josephson type...... coupling between the two order parameters a ''textured vortex'' is found by analytical and numerical solution of the Ginzburg-Landau equations. With a Josephson type coupling between the two order parameters we find the system to split up in two domains separated by a domain wall, where the order parameter...
Domain Walls and Textured Vortices in a Two-Component Ginzburg-Landau Model
DEFF Research Database (Denmark)
Madsen, Søren Peder; Gaididei, Yu. B.; Christiansen, Peter Leth
2005-01-01
We look for domain wall and textured vortex solutions in a two-component Ginzburg-Landau model inspired by two-band superconductivity. The two-dimensional two-component model, with equal coherence lengths and no magnetic field, shows some interesting properties. In the absence of a Josephson type...... coupling between the two order parameters a ''textured vortex'' is found by analytical and numerical solution of the Ginzburg-Landau equations. With a Josephson type coupling between the two order parameters we find the system to split up in two domains separated by a domain wall, where the order parameter...
Modeling Thermal Dust Emission with Two Components: Application to the Planck HFI Maps
Meisner, Aaron
2014-01-01
We apply the Finkbeiner et al. (1999) two-component thermal dust emission model to the Planck HFI maps. This parametrization of the far-infrared dust spectrum as the sum of two modified blackbodies serves as an important alternative to the commonly adopted single modified blackbody (MBB) dust emission model. Analyzing the joint Planck/DIRBE dust spectrum, we show that two-component models provide a better fit to the 100-3000 GHz emission than do single-MBB models, though by a lesser margin than found by Finkbeiner et al. (1999) based on FIRAS and DIRBE. We also derive full-sky 6.1' resolution maps of dust optical depth and temperature by fitting the two-component model to Planck 217-857 GHz along with DIRBE/IRAS 100 micron data. Because our two-component model matches the dust spectrum near its peak, accounts for the spectrum's flattening at millimeter wavelengths, and specifies dust temperature at 6.1' FWHM, our model provides reliable, high-resolution thermal dust emission foreground predictions from 100 to...
Modelling elliptical galaxies phase-space constraints on two-component (gamma1,gamma2) models
Ciotti, L
1999-01-01
In the context of the study of the properties of the mutual mass distribution of the bright and dark matter in elliptical galaxies, present a family of two-component, spherical, self-consistent galaxy models, where one density distribution follows a gamma_1 profile, and the other a gamma_2 profile [(gamma_1,gamma_2) models], with different total masses and ``core'' radii. A variable amount of Osipkov-Merritt (radial) orbital anisotropy is allowed in both components. For these models, I derive analytically the necessary and sufficient conditions that the model parameters must satisfy in order to correspond to a physical system. Moreover, the possibility of adding a black hole at the center of radially anisotropic gamma models is discussed, determining analytically a lower limit of the anisotropy radius as a function of gamma. The analytical phase-space distribution function for (1,0) models is presented, together with the solution of the Jeans equations and the quantities entering the scalar virial theorem. It...
Indian Academy of Sciences (India)
Surendra P Verma
2000-03-01
This paper presents error propagation equations for modeling of radiogenic isotopes during mixing of two components or end-members. These equations can be used to estimate errors on an isotopic ratio in the mixture of two components, as a function of the analytical errors or the total errors of geological field sampling and analytical errors. Two typical cases (``Small errors'' and ``Large errors'') are illustrated for mixing of Sr isotopes. Similar examples can be formulated for the other radiogenic isotopic ratios. Actual isotopic data for sediment and basalt samples from the Cocos plate are also included to further illustrate the use of these equations. The isotopic compositions of the predicted mixtures can be used to constrain the origin of magmas in the central part of the Mexican Volcanic Belt. These examples show the need of high quality experimental data for them to be useful in geochemical modeling of magmatic processes.
A two-component Frenkel-Kontorowa model for surface alloy formation
Daruka, I
2003-01-01
It has been shown by recent experiments that bulk immiscible metals (e.g. Ag/Cu, Ag/Co and Au/Ni) can form binary alloys on certain surfaces where the substrate mediates the elastic misfits between the two components, thus relieving the elastic strain in the overlayer. These novel surface alloys exhibit a rich phase structure. We formulate a two-component Frenkel-Kontorova model in one dimension to study surface alloy formation. This model can naturally incorporate dislocation formation that plays a crucial role in determining the actual structure of the system. Using energy minimization calculations we provide a phase diagram in terms of average alloy composition and the energy of mixing. Monte Carlo simulations were also performed to study the structure and interaction of the emerging dislocations.
Mapping the Two-Component Atomic Fermi Gas to the Nuclear Shell-Model
DEFF Research Database (Denmark)
Özen, C.; Zinner, Nikolaj Thomas
2014-01-01
of the external potential becomes important. A system of two-species fermionic cold atoms with an attractive zero-range interaction is analogous to a simple model of nucleus in which neutrons and protons interact only through a residual pairing interaction. In this article, we discuss how the problem of a two......-component atomic fermi gas in a tight external trap can be mapped to the nuclear shell model so that readily available many-body techniques in nuclear physics, such as the Shell Model Monte Carlo (SMMC) method, can be directly applied to the study of these systems. We demonstrate an application of the SMMC method...
Robinson, P. A.; Newman, D. L.
1990-01-01
A simple two-component model of strong turbulence that makes clear predictions for the scalings, spectra, and statistics of Langmuir waves is developed. Scalings of quantities such as energy density, power input, dissipation power wave collapse, and number density of collapsing objects are investigated in detail and found to agree well with model predictions. The nucleation model of wave-packet formation is strongly supported by the results. Nucleation proceeds with energy flowing from background to localized states even in the absence of a driver. Modulational instabilities play little or no role in maintaining the turbulent state when significant density nonuniformities are present.
Mapping the Two-Component Atomic Fermi Gas to the Nuclear Shell-Model
DEFF Research Database (Denmark)
Özen, C.; Zinner, Nikolaj Thomas
2014-01-01
The physics of a two-component cold fermi gas is now frequently addressed in laboratories. Usually this is done for large samples of tens to hundreds of thousands of particles. However, it is now possible to produce few-body systems (1-100 particles) in very tight traps where the shell structure...... of the external potential becomes important. A system of two-species fermionic cold atoms with an attractive zero-range interaction is analogous to a simple model of nucleus in which neutrons and protons interact only through a residual pairing interaction. In this article, we discuss how the problem of a two...
Sin, Kuek Jia; Cheong, Chin Wen; Hooi, Tan Siow
2017-04-01
This study aims to investigate the crude oil volatility using a two components autoregressive conditional heteroscedasticity (ARCH) model with the inclusion of abrupt jump feature. The model is able to capture abrupt jumps, news impact, clustering volatility, long persistence volatility and heavy-tailed distributed error which are commonly observed in the crude oil time series. For the empirical study, we have selected the WTI crude oil index from year 2000 to 2016. The results found that by including the multiple-abrupt jumps in ARCH model, there are significant improvements of estimation evaluations as compared with the standard ARCH models. The outcomes of this study can provide useful information for risk management and portfolio analysis in the crude oil markets.
Modeling and Simulation of Two-Phase Two-Component Flow with Disappearing Nonwetting Phase
Neumann, Rebecca; Ippisch, Olaf
2012-01-01
Carbon Capture and Storage (CCS) is a recently discussed new technology, aimed at allowing an ongoing use of fossil fuels while preventing the produced CO2 to be released to the atmosphere. CSS can be modeled with two components (water and CO2) in two phases (liquid and CO2). To simulate the process, a multiphase flow equation with equilibrium phase exchange is used. One of the big problems arising in two-phase two-component flow simulations is the disappearance of the nonwetting phase, which leads to a degeneration of the equations satisfied by the saturation. A standard choice of primary variables, which is the pressure of one phase and the saturation of the other phase, cannot be applied here. We developed a new approach using the pressure of the nonwetting phase and the capillary pressure as primary variables. One important advantage of this approach is the fact that we have only one set of primary variables that can be used for the biphasic as well as the monophasic case. We implemented this new choice o...
Two-component mixture model: Application to palm oil and exchange rate
Phoong, Seuk-Yen; Ismail, Mohd Tahir; Hamzah, Firdaus Mohamad
2014-12-01
Palm oil is a seed crop which is widely adopt for food and non-food products such as cookie, vegetable oil, cosmetics, household products and others. Palm oil is majority growth in Malaysia and Indonesia. However, the demand for palm oil is getting growth and rapidly running out over the years. This phenomenal cause illegal logging of trees and destroy the natural habitat. Hence, the present paper investigates the relationship between exchange rate and palm oil price in Malaysia by using Maximum Likelihood Estimation via Newton-Raphson algorithm to fit a two components mixture model. Besides, this paper proposes a mixture of normal distribution to accommodate with asymmetry characteristics and platykurtic time series data.
Freshwater DOM quantity and quality from a two-component model of UV absorbance
Carter, Heather T.; Tipping, Edward; Koprivnjak, Jean-Francois; Miller, Matthew P.; Cookson, Brenda; Hamilton-Taylor, John
2012-01-01
We present a model that considers UV-absorbing dissolved organic matter (DOM) to consist of two components (A and B), each with a distinct and constant spectrum. Component A absorbs UV light strongly, and is therefore presumed to possess aromatic chromophores and hydrophobic character, whereas B absorbs weakly and can be assumed hydrophilic. We parameterised the model with dissolved organic carbon concentrations [DOC] and corresponding UV spectra for c. 1700 filtered surface water samples from North America and the United Kingdom, by optimising extinction coefficients for A and B, together with a small constant concentration of non-absorbing DOM (0.80 mg DOC L-1). Good unbiased predictions of [DOC] from absorbance data at 270 and 350 nm were obtained (r2 = 0.98), the sum of squared residuals in [DOC] being reduced by 66% compared to a regression model fitted to absorbance at 270 nm alone. The parameterised model can use measured optical absorbance values at any pair of suitable wavelengths to calculate both [DOC] and the relative amounts of A and B in a water sample, i.e. measures of quantity and quality. Blind prediction of [DOC] was satisfactory for 9 of 11 independent data sets (181 of 213 individual samples).
Sander, Myriam C; Werkle-Bergner, Markus; Gerjets, Peter; Shing, Yee Lee; Lindenberger, Ulman
2012-02-15
We recently introduced a two-component model of the mechanisms underlying age differences in memory functioning across the lifespan. According to this model, memory performance is based on associative and strategic components. The associative component is relatively mature by middle childhood, whereas the strategic component shows a maturational lag and continues to develop until young adulthood. Focusing on work from our own lab, we review studies from the domains of episodic and working memory informed by this model, and discuss their potential implications for educational settings. The episodic memory studies uncover the latent potential of the associative component in childhood by documenting children's ability to greatly improve their memory performance following mnemonic instruction and training. The studies on working memory also point to an immature strategic component in children whose operation is enhanced under supportive conditions. Educational settings may aim at fostering the interplay between associative and strategic components. We explore possible routes towards this goal by linking our findings to recent trends in research on instructional design. Copyright © 2011 Elsevier Ltd. All rights reserved.
Bioorthogonal two-component drug delivery in HER2(+) breast cancer mouse models
Hapuarachchige, Sudath; Kato, Yoshinori; Artemov, Dmitri
2016-04-01
The HER2 receptor is overexpressed in approximately 20% of breast cancers and is associated with tumorigenesis, metastasis, and a poor prognosis. Trastuzumab is a first-line targeted drug used against HER2(+) breast cancers; however, at least 50% of HER2(+) tumors develop resistance to trastuzumab. To treat these patients, trastuzumab-based antibody-drug conjugates (ACDs) have been developed and are currently used in the clinic. Despite their high efficacy, the long circulation half-life and non-specific binding of cytotoxic ADCs can result in systemic toxicity. In addition, standard ADCs do not provide an image-guided mode of administration. Here, we have developed a two-component, two-step, pre-targeting drug delivery system integrated with image guidance to circumvent these issues. In this strategy, HER2 receptors are pre-labeled with a functionalized trastuzumab antibody followed by the delivery of drug-loaded nanocarriers. Both components are cross-linked by multiple bioorthogonal click reactions in situ on the surface of the target cell and internalized as nanoclusters. We have explored the efficacy of this delivery strategy in HER2(+) human breast cancer models. Our therapeutic study confirms the high therapeutic efficacy of the new delivery system, with no significant toxicity.
Large-scale Models Reveal the Two-component Mechanics of Striated Muscle
Directory of Open Access Journals (Sweden)
Robert Jarosch
2008-12-01
Full Text Available This paper provides a comprehensive explanation of striated muscle mechanics and contraction on the basis of filament rotations. Helical proteins, particularly the coiled-coils of tropomyosin, myosin and ÃŽÂ±-actinin, shorten their H-bonds cooperatively and produce torque and filament rotations when the Coulombic net-charge repulsion of their highly charged side-chains is diminished by interaction with ions. The classical Ã¢Â€Âœtwo-component modelÃ¢Â€Â of active muscle differentiated a Ã¢Â€Âœcontractile componentÃ¢Â€Â which stretches the Ã¢Â€Âœseries elastic componentÃ¢Â€Â during force production. The contractile components are the helically shaped thin filaments of muscle that shorten the sarcomeres by clockwise drilling into the myosin cross-bridges with torque decrease (= force-deficit. Muscle stretch means drawing out the thin filament helices off the cross-bridges under passive counterclockwise rotation with torque increase (= stretch activation. Since each thin filament is anchored by four elastic ÃŽÂ±-actinin Z-filaments (provided with forceregulating sites for Ca2+ binding, the thin filament rotations change the torsional twist of the four Z-filaments as the Ã¢Â€Âœseries elastic componentsÃ¢Â€Â. Large scale models simulate the changes of structure and force in the Z-band by the different Z-filament twisting stages A, B, C, D, E, F and G. Stage D corresponds to the isometric state. The basic phenomena of muscle physiology, i. e. latency relaxation, Fenn-effect, the force-velocity relation, the length-tension relation, unexplained energy, shortening heat, the Huxley-Simmons phases, etc. are explained and interpreted with the help of the model experiments.
Discrete kink dynamics in hydrogen-bonded chains: The two-component model
DEFF Research Database (Denmark)
Karpan, V.M.; Zolotaryuk, Yaroslav; Christiansen, Peter Leth
2004-01-01
We study discrete topological solitary waves (kinks and antikinks) in two nonlinear diatomic chain models that describe the collective dynamics of proton transfers in one-dimensional hydrogen-bonded networks. The essential ingredients of the models are (i) a realistic (anharmonic) ion-proton inte......We study discrete topological solitary waves (kinks and antikinks) in two nonlinear diatomic chain models that describe the collective dynamics of proton transfers in one-dimensional hydrogen-bonded networks. The essential ingredients of the models are (i) a realistic (anharmonic) ion...... principal differences, like a significant difference in the stability switchings behavior for the kinks and the antikinks. Water-filled carbon nanotubes are briefly discussed as possible realistic systems, where topological discrete (anti)kink states might exist....
Two Component Dark Matters in S_4 x Z_2 Flavor Symmetric Extra U(1) Model
Daikoku, Yasuhiro; Toma, Takashi
2011-01-01
We study cosmic-ray anomaly observed by PAMELA based on E_6 inspired extra U(1) model with S_4 x Z_2 flavor symmetry. In our model, the lightest flavon has very long lifetime of O(10^{18)) second which is longer than the age of the universe, but not long enough to explain the PAMELA result ~ O(10^{26}) sec. Such a situation could be avoidable by considering that the flavon is not the dominant component of dark matters and the dominant one is the lightest neutralino. With appropriate parameter set, density parameter of dark matter and over-abundance of positron flux in cosmic-ray are realized at the same time. There is interesting correlation between spectrum of positron flux and V_{MNS}. No excess of anti-proton in cosmic-ray suggests that sfermions are heavier than 4 TeV and the masses of the light Higgs bosons are degenerated.
Two-Component Jet Models of Gamma-Ray Burst Sources
Peng, F; Granot, J; Peng, Fang; Konigl, Arieh; Granot, Jonathan
2004-01-01
Recent observational and theoretical studies have raised the possibility that the collimated outflows in gamma-ray burst (GRB) sources have two distinct components: a narrow (opening half-angle $\\theta_{\\rm n}$), highly relativistic (initial Lorentz factor $\\eta_\\rmn \\gtrsim 10^2$) outflow, from which the $\\gamma$-ray emission originates, and a wider ($\\theta_{\\rm w} \\lesssim 3 \\theta_{\\rm n}$), moderately relativistic ($\\eta_{\\rm w}\\sim 10$) surrounding flow. Using a simple synchrotron emission model, we calculate the R-band afterglow lightcurves expected in this scenario and derive algebraic expressions for the flux ratios of the emission from the two jet components at the main transition times in the lightcurve. We apply this model to GRB sources, for explaining the structure of afterglows and source energetics, as well as to X-ray flash sources, which we interpret as GRB jets viewed at an angle $\\theta_{\\rm obs} > \\theta_{\\rm n}$. Finally, we argue that a neutron-rich hydromagnetic outflow may naturally g...
A two component model for thermal emission from organic grains in Comet Halley
Chyba, Christopher; Sagan, Carl
1988-01-01
Observations of Comet Halley in the near infrared reveal a triple-peaked emission feature near 3.4 micrometer, characteristic of C-H stretching in hydrocarbons. A variety of plausible cometary materials exhibit these features, including the organic residue of irradiated candidate cometary ices (such as the residue of irradiated methane ice clathrate, and polycyclic aromatic hydrocarbons. Indeed, any molecule containing -CH3 and -CH2 alkanes will emit at 3.4 micrometer under suitable conditions. Therefore tentative identifications must rest on additional evidence, including a plausible account of the origins of the organic material, a plausible model for the infrared emission of this material, and a demonstration that this conjunction of material and model not only matches the 3 to 4 micrometer spectrum, but also does not yield additional emission features where none is observed. In the case of the residue of irradiated low occupancy methane ice clathrate, it is argued that the lab synthesis of the organic residue well simulates the radiation processing experienced by Comet Halley.
Three-body recombination of two-component cold atomic gases into deep dimers in an optical model
DEFF Research Database (Denmark)
Mikkelsen, Mathias; Jensen, A. S.; Fedorov, D. V.
2015-01-01
We consider three-body recombination into deep dimers in a mass-imbalanced two-component atomic gas. We use an optical model where a phenomenological imaginary potential is added to the lowest adiabatic hyper-spherical potential. The consequent imaginary part of the energy eigenvalue corresponds...... to the decay rate or recombination probability of the three-body system. The method is formulated in details and the relevant qualitative features are discussed as functions of scattering lengths and masses. We use zero-range model in analyses of recent recombination data. The dominating scattering length...
Numerical modeling of sintering of two-component metal powders with laser beams
Niziev, V. G.; Koldoba, A. V.; Mirzade, F. Kh.; Panchenko, V. Ya.; Poveschenko, Yu. A.; Popov, M. V.
2011-02-01
Direct laser sintering of a mixture of two metal powders with significantly different melting points is investigated by numerical simulation. The model is based on self-consistent non-linear continuity equations for volume fractions of components and on energy transfer equations for the powder mixture. It includes the movement of the solid particles due to shrinkage because of the density change of the powder mixture and the liquid flow driven by the capillary and gravity forces. The liquid flow is determined by Darcy's law. The effect of surface settlement of the powder is obtained. The width increasing rate of the melting zone depend both on the parameters of the laser radiation (on the power of the beam) and on the physical parameters of the particle's material, and it increases with the increasing of the penetrability or the increasing of the phase-transition heat. The increasing of the laser power under other factors being equal results in the acceleration of the melting front propagation.
Kierzek, Andrzej M; Zhou, Lu; Wanner, Barry L
2010-03-01
Two-component systems (TCSs) are prevalent signal transduction systems in bacteria that control innumerable adaptive responses to environmental cues and host-pathogen interactions. We constructed a detailed stochastic kinetic model of two component signalling based on published data. Our model has been validated with flow cytometry data and used to examine reporter gene expression in response to extracellular signal strength. The model shows that, depending on the actual kinetic parameters, TCSs exhibit all-or-none, graded or mixed mode responses. In accordance with other studies, positively autoregulated TCSs exhibit all-or-none responses. Unexpectedly, our model revealed that TCSs lacking a positive feedback loop exhibit not only graded but also mixed mode responses, in which variation of the signal strength alters the level of gene expression in induced cells while the regulated gene continues to be expressed at the basal level in a substantial fraction of cells. The graded response of the TCS changes to mixed mode response by an increase of the translation initiation rate of the histidine kinase. Thus, a TCS is an evolvable design pattern capable of implementing deterministic regulation and stochastic switches associated with both graded and threshold responses. This has implications for understanding the emergence of population diversity in pathogenic bacteria and the design of genetic circuits in synthetic biology applications. The model is available in systems biology markup language (SBML) and systems biology graphical notation (SBGN) formats and can be used as a component of large-scale biochemical reaction network models.
Energy Technology Data Exchange (ETDEWEB)
Butlitsky, M. A.; Zelener, B. V. [Joint Institute for High Temperature of Russian Academy of Science, 125412, Russia, Moscow, Izhorskaya str. 13/2 (Russian Federation); Zelener, B. B. [Joint Institute for High Temperature of Russian Academy of Science, 125412, Russia, Moscow, Izhorskaya str. 13/2 (Russian Federation); Moscow Engineering Physics Institute, 115409, Russia, Moscow, Kashirskoe sh. 31 (Russian Federation)
2014-07-14
A two-component plasma model, which we called a “shelf Coulomb” model has been developed in this work. A Monte Carlo study has been undertaken to calculate equations of state, pair distribution functions, internal energies, and other thermodynamics properties. A canonical NVT ensemble with periodic boundary conditions was used. The motivation behind the model is also discussed in this work. The “shelf Coulomb” model can be compared to classical two-component (electron-proton) model where charges with zero size interact via a classical Coulomb law. With important difference for interaction of opposite charges: electrons and protons interact via the Coulomb law for large distances between particles, while interaction potential is cut off on small distances. The cut off distance is defined by an arbitrary ε parameter, which depends on system temperature. All the thermodynamics properties of the model depend on dimensionless parameters ε and γ = βe{sup 2}n{sup 1/3} (where β = 1/k{sub B}T, n is the particle's density, k{sub B} is the Boltzmann constant, and T is the temperature) only. In addition, it has been shown that the virial theorem works in this model. All the calculations were carried over a wide range of dimensionless ε and γ parameters in order to find the phase transition region, critical point, spinodal, and binodal lines of a model system. The system is observed to undergo a first order gas-liquid type phase transition with the critical point being in the vicinity of ε{sub crit}≈13(T{sub crit}{sup *}≈0.076),γ{sub crit}≈1.8(v{sub crit}{sup *}≈0.17),P{sub crit}{sup *}≈0.39, where specific volume v* = 1/γ{sup 3} and reduced temperature T{sup *} = ε{sup −1}.
Butlitsky, M A; Zelener, B B; Zelener, B V
2014-07-14
A two-component plasma model, which we called a "shelf Coulomb" model has been developed in this work. A Monte Carlo study has been undertaken to calculate equations of state, pair distribution functions, internal energies, and other thermodynamics properties. A canonical NVT ensemble with periodic boundary conditions was used. The motivation behind the model is also discussed in this work. The "shelf Coulomb" model can be compared to classical two-component (electron-proton) model where charges with zero size interact via a classical Coulomb law. With important difference for interaction of opposite charges: electrons and protons interact via the Coulomb law for large distances between particles, while interaction potential is cut off on small distances. The cut off distance is defined by an arbitrary ɛ parameter, which depends on system temperature. All the thermodynamics properties of the model depend on dimensionless parameters ɛ and γ = βe(2)n(1/3) (where β = 1/kBT, n is the particle's density, kB is the Boltzmann constant, and T is the temperature) only. In addition, it has been shown that the virial theorem works in this model. All the calculations were carried over a wide range of dimensionless ɛ and γ parameters in order to find the phase transition region, critical point, spinodal, and binodal lines of a model system. The system is observed to undergo a first order gas-liquid type phase transition with the critical point being in the vicinity of ɛ(crit) ≈ 13(T(*)(crit) ≈ 0.076), γ(crit) ≈ 1.8(v(*)(crit) ≈ 0.17), P(*)(crit) ≈ 0.39, where specific volume v* = 1/γ(3) and reduced temperature T(*) = ɛ(-1).
Three-body recombination of two-component cold atomic gases into deep dimers in an optical model
DEFF Research Database (Denmark)
Mikkelsen, Mathias; Jensen, A. S.; Fedorov, D. V.
2015-01-01
. The Efimov scaling between recombination peaks is calculated and shown to depend on both scattering lengths. Recombination is predicted to be largest for heavy-heavy-light systems. Universal properties of the optical parameters are indicated. We compare to available experiments and find in general very......We consider three-body recombination into deep dimers in a mass-imbalanced two-component atomic gas. We use an optical model where a phenomenological imaginary potential is added to the lowest adiabatic hyper-spherical potential. The consequent imaginary part of the energy eigenvalue corresponds...... to the decay rate or recombination probability of the three-body system. The method is formulated in details and the relevant qualitative features are discussed as functions of scattering lengths and masses. We use zero-range model in analyses of recent recombination data. The dominating scattering length...
Directory of Open Access Journals (Sweden)
P.K. Tripathy
2008-07-01
Full Text Available A new type of replenishment policy is suggested in an entropy order quantity model for a perishable product possessing fuzzy holding cost and fuzzy disposal cost. This model represents an appropriate combination of two component demand with discounted selling price, particularly over a finite time horizon. Its main aim lies in the need for an entropic cost of the cycle time is a key feature of specific perishable product like fruits, vegetables, food stuffs, fishes etc. To handle this multiplicity of objectives in a pragmatic approach, entropic ordering quantity model with discounted selling price during pre and post deterioration of perishable items to optimize its payoff is proposed. It has been imperative to demonstrate this model by analysis, which reveals some important characteristics of discounted structure. Furthermore, numerical experiments are conducted to evaluate the difference between the crisp and fuzzy cases in EOQ and EnOQ separately. This paper explores the economy of investing in economics of lot sizing in Fuzzy EOQ, Crisp EOQ and Crisp EnOQ models. The proposed paper reveals itself as a pragmatic alternative to other approaches based on two component demand function with very sound theoretical underpinnings but with few possibilities of actually being put into practice. The results indicate that this can become a good model and can be replicated by researchers in neighbourhood of its possible extensions.
Ross, Scott R; Hertenstein, Matthew J; Wrobel, Thomas A
2007-04-01
In a sample composed of 162 young adults, we examined the generalizability of an orthogonal, 2-component model of forgiveness previously reported by Ross, Kendall, Matters, Rye, and Wrobel (2004). Furthermore, we examined the relationship of these two components with maladaptive personality characteristics as measured by the Schedule for Nonadaptive and Adaptive Personality (SNAP; Clark, 1993), with an emphasis on Five-factor model markers of personality. Using multiple measures of forgiveness, principal components analysis supported a 2-component model representing self-forgiveness and other forgiveness. Despite the independence of self-forgiveness and other forgiveness, zero order correlations with SNAP scales supported convergent more than discriminant validity. In contrast, hierarchical multiple regression analyses emphasized the discriminant validity of self-forgiveness and other forgiveness. Among indices of Neuroticism, Extraversion, and Agreeableness, Negative Temperament (+) was the sole predictor of self-forgiveness. In contrast, Positive Temperament (+), Aggression (-), and Histrionic PD (-) were most associated with other forgiveness. Overall, these findings support the validity of these factors and highlight the importance of self-forgiveness in clinical assessment.
A two-component jet model based on the Blandford-Znajek and Blandford-Payne processes
Xie, Wei; Zou, Yuan-Chuan; Wang, Ding-Xiong; Wu, Qingwen; Wang, Jiu-Zhou
2012-01-01
We propose a two-component jet model consistent with the observations of several gamma ray bursts (GRBs) and active galactic nuclei (AGNs). The jet consists of inner and outer components, and they are supposed to be driven by the Blandford-Znajek (BZ) and Blandford-Payne (BP) processes, respectively. The baryons in the BP jet is accelerated centrifugally via the magnetic field anchored in the accretion disk. The BZ jet is assumed to be entrained a fraction of accreting matter leaving the inner edge of the accretion disk, and the baryons are accelerated in the conversion from electromagnetic energy to the kinetic energy. By fitting the Lorentz factors of some GRBs (GRB 030329, GRB 051221A, GRB 080413B) and AGNs (Cen A, Mkn 501 and Mkn 421) with this model, we constrain the physical parameters related to the accretion and outflow of these two kind of objects. We conclude that the spine/sheath structure of the jet from these sources can be interpreted naturally by the BZ and BP processes.
A two-component jet model based on the Blandford-Znajek and Blandford-Payne processes
Xie, Wei; Lei, Wei-Hua; Zou, Yuan-Chuan; Wang, Ding-Xiong; Wu, Qingwen; Wang, Jiu-Zhou
2012-07-01
We propose a two-component jet model consistent with the observations of several gamma ray bursts (GRBs) and active galactic nuclei (AGNs). The jet consists of inner and outer components, which are supposed to be driven by the Blandford-Znajek (BZ) and Blandford-Payne (BP) processes, respectively. The baryons in the BP jet are accelerated centrifugally via the magnetic field anchored in the accretion disk. The BZ jet is assumed to be entrained in a fraction of accreting matter leaving the inner edge of the accretion disk, and the baryons are accelerated in the conversion from electromagnetic energy to kinetic energy. By fitting the Lorentz factors of some GRBs (GRB 030329, GRB 051221A and GRB 080413B) and AGNs (Cen A, Mkn 501 and Mkn 421) with this model, we constrain the physical parameters related to the accretion and outflow of these two kinds of objects. We conclude that the spine/sheath structure of the jet from these sources can be interpreted naturally by the BZ and BP processes.
A two-component jet model based on the Blandford-Znajek and Blandford-Payne processes
Institute of Scientific and Technical Information of China (English)
Wei Xie; Wei-Hua Lei; Yuan-Chuan Zou; Ding-Xiong Wang; Qingwen Wu; Jiu-Zhou Wang
2012-01-01
We propose a two-component jet model consistent with the observations of several gamma ray bursts(GRBs)and active galactic nuclei(AGNs).The jet consists of inner and outer components,which are supposed to be driven by the BlandfordZnajek(BZ)and Blandford-Payne(BP)processes,respectively.The baryons in the BP jet are accelerated centrifugally via the magnetic field anchored in the accretion disk.The BZ jet is assumed to be entrained in a fraction of accreting matter leaving the inner edge of the accretion disk,and the baryons are accelerated in the conversion from electromagnetic energy to kinetic energy.By fitting the Lorentz factors of some GRBs(GRB 030329,GRB 051221A and GRB 080413B)and AGNs(Cen A,Mkn 501 and Mkn 421)with this model,we constrain the physical parameters related to the accretion and outflow of these two kinds of objects.We conclude that the spine/sheath structure of the jet from these sources can be interpreted naturally by the BZ and BP processes.
Belotsky, K; Kouvaris, C; Laletin, M
2015-01-01
We study a two component dark matter candidate inspired by the Minimal Walking Technicolor model. Dark matter consists of a dominant SIMP-like dark atom component made of bound states between primordial helium nuclei and a doubly charged technilepton, and a small WIMP-like component made of another dark atom bound state between a doubly charged technibaryon and a technilepton. This scenario is consistent with direct search experimental findings because the dominant SIMP component interacts too strongly to reach the depths of current detectors with sufficient energy to recoil and the WIMP-like component is too small to cause significant amount of events. In this context a metastable technibaryon that decays to $e^+e^+$, $\\mu^+ \\mu^+$ and $\\tau^+ \\tau^+$ can in principle explain the observed positron excess by AMS-02 and PAMELA, while being consistent with the photon flux observed by FERMI/LAT. We scan the parameters of the model and we find the best possible fit to the latest experimental data. We find that th...
Rafal Podlaski; Francis Roesch
2014-01-01
In recent years finite-mixture models have been employed to approximate and model empirical diameter at breast height (DBH) distributions. We used two-component mixtures of either the Weibull distribution or the gamma distribution for describing the DBH distributions of mixed-species, two-cohort forest stands, to analyse the relationships between the DBH components,...
Institute of Scientific and Technical Information of China (English)
无
2010-01-01
We re-examine the ten Reverberation Mapping(RM) sources with public data based on the two-component model of the Broad Line Region(BLR).In fitting their broad Hβ Mlines,six of them only need one Gaussian component,one of them has a double-peak profile,one has an irregular profile,and only two of them need two components,i.e.,a Very Broad Gaussian Component(VBGC) and an Inter-Mediate Gaussian Component(IMGC).The Gaussian components are assumed to come from two distinct regions in the two-component model;they are the Very Broad Line Region(VBLR) and the Inter-Mediate Line region(IMLR).The two sources with a two-component profile are Mrk 509 and NGC 4051.The time lags of the two components of both sources satisfy tIMLR/tVBLR=V 2VBLR/V 2IMLR,where tIMLR and tVBLR are the lags of the two components while VIMLR and VVBLR represent the mean gas velocities of the two regions,supporting the two-component model of the BLR of Active Galactic Nuclei(AGNs).The fact that most of these ten sources only have the VBGC confirms the assumption that RM mainly measures the radius of the VBLR;consequently,the radius obtained from the R-L relationship mainly represents the radius of VBLR.Moreover,NGC 4051,with a lag of about 5 days in the one component model,is an outlier on the R-L relationship as shown in Kaspi et al.(2005);however this problem disappears in our two-component model with lags of about 2 and 6 days for the VBGC and IMGC,respectively.
Grasman, J.; Herwaarden, van O.A.; Hemerik, L.; Lenteren, van J.C.
2001-01-01
A two-component differential equation model is formulated for a host–parasitoid interaction. Transient dynamics and population crashes of this system are analysed using differential inequalities. Two different cases can be distinguished: either the intrinsic growth rate of the host population is sma
Indian Academy of Sciences (India)
Debasish Majumdar; Kamakshya Prasad Modak; Subhendu Rakshit
2016-02-01
We propose a two-component dark matter (DM) model, each component of which is a real singlet scalar, to explain results from both direct and indirect detection experiments. We put the constraints on the model parameters from theoretical bounds, PLANCK relic density results and direct DM experiments. The -ray flux is computed from DM annihilation in this framework and is then compared with the Fermi-LAT observations from galactic centre region and Fermi bubble.
Podlaski, Rafał; Roesch, Francis A
2014-03-01
In recent years finite-mixture models have been employed to approximate and model empirical diameter at breast height (DBH) distributions. We used two-component mixtures of either the Weibull distribution or the gamma distribution for describing the DBH distributions of mixed-species, two-cohort forest stands, to analyse the relationships between the DBH components, age cohorts and dominant species, and to assess the significance of differences between the mixture distributions and the kernel density estimates. The data consisted of plots from the Świętokrzyski National Park (Central Poland) and areas close to and including the North Carolina section of the Great Smoky Mountains National Park (USA; southern Appalachians). The fit of the mixture Weibull model to empirical DBH distributions had a precision similar to that of the mixture gamma model, slightly less accurate estimate was obtained with the kernel density estimator. Generally, in the two-cohort, two-storied, multi-species stands in the southern Appalachians, the two-component DBH structure was associated with age cohort and dominant species. The 1st DBH component of the mixture model was associated with the 1st dominant species sp1 occurred in young age cohort (e.g., sweetgum, eastern hemlock); and to a lesser degree, the 2nd DBH component was associated with the 2nd dominant species sp2 occurred in old age cohort (e.g., loblolly pine, red maple). In two-cohort, partly multilayered, stands in the Świętokrzyski National Park, the DBH structure was usually associated with only age cohorts (two dominant species often occurred in both young and old age cohorts). When empirical DBH distributions representing stands of complex structure are approximated using mixture models, the convergence of the estimation process is often significantly dependent on the starting strategies. Depending on the number of DBHs measured, three methods for choosing the initial values are recommended: min.k/max.k, 0.5/1.5/mean
Directory of Open Access Journals (Sweden)
J. P. Kochendorfer
2010-10-01
Full Text Available The statistical-dynamical annual water balance model of Eagleson (1978 is a pioneering work in the analysis of climate, soil and vegetation interactions. This paper describes several enhancements and modifications to the model that improve its physical realism at the expense of its mathematical elegance and analytical tractability. In particular, the analytical solutions for the root zone fluxes are re-derived using separate potential rates of transpiration and bare-soil evaporation. Those potential rates, along with the rate of evaporation from canopy interception, are calculated using the two-component Shuttleworth-Wallace (1985 canopy model. In addition, the soil column is divided into two layers, with the upper layer representing the dynamic root zone. The resulting ability to account for changes in root-zone water storage allows for implementation at the monthly timescale. This new version of the Eagleson model is coined the Statistical-Dynamical Ecohydrology Model (SDEM. The ability of the SDEM to capture the seasonal dynamics of the local-scale soil-water balance is demonstrated for two grassland sites in the US Great Plains. Sensitivity of the results to variations in peak green leaf area index (LAI suggests that the mean peak green LAI is determined by some minimum in root zone soil moisture during the growing season. That minimum appears to be close to the soil matric potential at which the dominant grass species begins to experience water stress and well above the wilting point, thereby suggesting an ecological optimality hypothesis in which the need to avoid water-stress-induced leaf abscission is balanced by the maximization of carbon assimilation (and associated transpiration. Finally, analysis of the sensitivity of model-determined peak green LAI to soil texture shows that the coupled model is able to reproduce the so-called "inverse texture effect", which consists of the observation that natural vegetation in dry climates tends
Directory of Open Access Journals (Sweden)
J. P. Kochendorfer
2008-03-01
Full Text Available The statistical-dynamical annual water balance model of Eagleson (1978 is a pioneering work in the analysis of climate, soil and vegetation interactions. This paper describes several enhancements and modifications to the model that improve its physical realism at the expense of its mathematical elegance and analytical tractability. In particular, the analytical solutions for the root zone fluxes are re-derived using separate potential rates of transpiration and bare-soil evaporation. Those potential rates, along with the rate of evaporation from canopy interception, are calculated using the two-component Shuttleworth-Wallace (1985 canopy model. In addition, the soil column is divided into two layers, with the upper layer representing the dynamic root zone. The resulting ability to account for changes in root-zone water storage allows for implementation at the monthly timescale. This new version of the Eagleson model is coined the Statistical-Dynamical Ecohydrology Model (SDEM. The ability of the SDEM to capture the seasonal dynamics of the local-scale soil-water balance is demonstrated for two grassland sites in the US Great Plains. Sensitivity of the results to variations in peak green Leaf Area Index (LAI suggests that the mean peak green LAI is determined by some minimum in root zone soil moisture during the growing season. That minimum appears to be close to the soil matric potential at which the dominant grass species begins to experience water stress and well above the wilting point, thereby suggesting an ecological optimality hypothesis in which the need to avoid water-stress-induced leaf abscission is balanced by the maximization of carbon assimilation (and associated transpiration. Finally, analysis of the sensitivity of model-determined peak green LAI to soil texture shows that the coupled model is able to reproduce the so-called "inverse texture effect", which consists of the observation that natural vegetation in dry climates tends
Bright, Nathan G.; Carroll, Richard J.; Applegate, Bruce M.
2004-03-01
Microbial contamination has become a mounting concern the last decade due to an increased emphasis of minimally processed food products specifically produce, and the recognition of foodborne pathogens such as Campylobacter jejuni, Escherichia coli O157:H7, and Listeria monocytogenes. This research investigates a detection approach utilizing bacteriophage pathogen specificity coupled with a bacterial bioluminescent bioreporter utilizing the quorum sensing molecule from Vibrio fischeri, N-(3-oxohexanoyl)-homoserine lactone (3-oxo-C6-HSL). The 3-oxo-C6-HSL molecules diffuse out of the target cell after infection and induce bioluminescence from a population of 3-oxo-C6-HSL bioreporters (ROLux). E. coli phage M13, a well-characterized bacteriophage, offers a model system testing the use of bacteriophage for pathogen detection through cell-to-cell communication via a LuxR/3-oxo-C6-HSL system. Simulated temperate phage assays tested functionality of the ROLux reporter and production of 3-oxo-C6-HSL by various test strains. These assays showed detection limits of 102cfu after 24 hours in a varietry of detection formats. Assays incorporating the bacteriophage M13-luxI with the ROLux reporter and a known population of target cells were subsequently developed and have shown consistent detection limits of 105cfu target organisms. Measurable light response from high concentrations of target cells was almost immediate, suggesting an enrichment step to further improve detection limits and reduce assay time.
Directory of Open Access Journals (Sweden)
Bhanupriya Dash
2017-09-01
Full Text Available Background: Replenishment policy for entropic order quantity model with two component demand and partial backlogging under inflation is an important subject in the stock management. Methods: In this paper an inventory model for non-instantaneous deteriorating items with stock dependant consumption rate and partial back logged in addition the effect of inflection and time value of money on replacement policy with zero lead time consider was developed. Profit maximization model is formulated by considering the effects of partial backlogging under inflation with cash discounts. Further numerical example presented to evaluate the relative performance between the entropic order quantity and EOQ models separately. Numerical example is present to demonstrate the developed model and to illustrate the procedure. Lingo 13.0 version software used to derive optimal order quantity and total cost of inventory. Finally sensitivity analysis of the optimal solution with respect to different parameters of the system carried out. Results and conclusions: The obtained inventory model is very useful in retail business. This model can extend to total backorder.
Wiengarten, Tobias; Engelbrecht, Eugene; Fichtner, Horst; Kleimann, Jens; Scherer, Klaus
2016-01-01
We extend a two-component model for the evolution of fluctuations in the solar wind plasma so that it is fully three-dimensional (3D) and also coupled self-consistently to the large-scale magnetohydrodynamic (MHD) equations describing the background solar wind. The two classes of fluctuations considered are a high-frequency parallel-propagating wave-like piece and a low-frequency quasi-two-dimensional component. For both components, the nonlinear dynamics is dominanted by quasi-perpendicular spectral cascades of energy. Driving of the fluctuations, by, for example, velocity shear and pickup ions, is included. Numerical solutions to the new model are obtained using the Cronos framework, and validated against previous simpler models. Comparing results from the new model with spacecraft measurements, we find improved agreement relative to earlier models that employ prescribed background solar wind fields. Finally, the new results for the wave-like and quasi-two-dimensional fluctuations are used to calculate ab i...
Energy Technology Data Exchange (ETDEWEB)
Pegos, V.R. [Universidade Estadual de Campinas (UNICAMP), SP (Brazil); Oliveira, P.S.L.; Balan, A. [Laboratorio Nacional de Biociencias - LNBIO, Campinas, SP (Brazil)
2012-07-01
Full text: In Xanthomonas citri, the phytopathogen responsible for the canker citrus disease, we identified in the ssuABCDE operon, genes encoding the alkanesulfonate ABC transporter as well as the two enzymes responsible for oxido reduction of the respective substrates. SsuD and SsuE proteins represent a two-component system that can be assigned to the group of FMNH{sub 2} -dependent monooxygenases. How- ever, despite of the biochemical information about SsuD and SsuE orthologs from Escherichia coli, there is no structural information of how the two proteins work together. In this work, we used ultracentrifugation, SAXS data and molecular modeling to construct a structural/functional model, which consists of eight molecules organized in a weathervane shape. Through this model, SsuD ligand-binding site for NADPH{sub 2} and FMN substrates is clearly exposed, in a way that might allow the protein-protein interactions with SsuE. Moreover, based on molecular dynamics simulations of SsuD in apo state, docked with NADPH{sub 2}, FMN or both substrates, we characterized the residues of the pocket, the mechanism of substrate interaction and transfer of electrons from NADPH{sub 2} to FMN. This is the first report that links functional and biochemical data with structural analyses. (author)
Shimizu, Kei; Saal, Alberto E.; Myers, Corinne E.; Nagle, Ashley N.; Hauri, Erik H.; Forsyth, Donald W.; Kamenetsky, Vadim S.; Niu, Yaoling
2016-03-01
We report major, trace, and volatile element (CO2, H2O, F, Cl, S) contents and Sr, Nd, and Pb isotopes of mid-ocean ridge basalt (MORB) glasses from the Northern East Pacific Rise (NEPR) off-axis seamounts, the Quebrada-Discovery-GoFar (QDG) transform fault system, and the Macquarie Island. The incompatible trace element (ITE) contents of the samples range from highly depleted (DMORB, Th/La ⩽ 0.035) to enriched (EMORB, Th/La ⩾ 0.07), and the isotopic composition spans the entire range observed in EPR MORB. Our data suggest that at the time of melt generation, the source that generated the EMORB was essentially peridotitic, and that the composition of NMORB might not represent melting of a single upper mantle source (DMM), but rather mixing of melts from a two-component mantle (depleted and enriched DMM or D-DMM and E-DMM, respectively). After filtering the volatile element data for secondary processes (degassing, sulfide saturation, assimilation of seawater-derived component, and fractional crystallization), we use the volatiles to ITE ratios of our samples and a two-component mantle melting-mixing model to estimate the volatile content of the D-DMM (CO2 = 22 ppm, H2O = 59 ppm, F = 8 ppm, Cl = 0.4 ppm, and S = 100 ppm) and the E-DMM (CO2 = 990 ppm, H2O = 660 ppm, F = 31 ppm, Cl = 22 ppm, and S = 165 ppm). Our two-component mantle melting-mixing model reproduces the kernel density estimates (KDE) of Th/La and 143Nd/144Nd ratios for our samples and for EPR axial MORB compiled from the literature. This model suggests that: (1) 78% of the Pacific upper mantle is highly depleted (D-DMM) while 22% is enriched (E-DMM) in volatile and refractory ITE, (2) the melts produced during variable degrees of melting of the E-DMM controls most of the MORB geochemical variation, and (3) a fraction (∼65% to 80%) of the low degree EMORB melts (produced by ∼1.3% melting) may escape melt aggregation by freezing at the base of the oceanic lithosphere, significantly enriching it in
Huang, Y.; Shao, H.; Thullner, M.; Kolditz, O.
2014-12-01
In applications of Deep Geothermal reservoirs, thermal recovery processes, and contaminated groundwater sites, the multiphase multicomponent flow and transport processes are often considered the most important underlying physical process. In particular, the behavior of phase appearance and disappearance is the critical to the performance of many geo-reservoirs, and great interests exit in the scientific community to simulate this coupled process. This work is devoted to the modeling and simulation of two-phase, two components flow and transport in the porous medium, whereas the phase change behavior in non-isothermal conditions is considered. In this work, we have implemented the algorithm developed by Marchand, et al., into the open source scientific software OpenGeoSys. The governing equation is formulated in terms of molar fraction of the light component and mean pressure as the persistent primary variables, which leads to a fully coupled nonlinear PDE system. One of the important advantages of this approach is avoiding the primary variables switching between single phase and two phase zones, so that this uniform system can be applied to describe the behavior of phase change. On the other hand, due to the number of unkown variables closure relationships are also formulated to close the whole equation system by using the approach of complementarity constrains. For the numerical technical scheme: The standard Galerkin Finite element method is applied for space discretization, while a fully implicit scheme for the time discretization, and Newton-Raphson method is utilized for the global linearization, as well as the closure relationship. This model is verified based on one test case developed to simulate the heat pipe problem. This benchmark involves two-phase two-component flow in saturated/unsaturated porous media under non-isothermal condition, including phase change and mineral-water geochemical reactive transport processes. The simulation results will be
Institute of Scientific and Technical Information of China (English)
Yan Jing; Shan Lei; Wang Yue; Xiao Zhi-Li; Wen Hai-Hu
2008-01-01
Low-temperature specific heat in a dichalcogenide superconductor 2H-NbSe2 is measured in various magnetic fields. It is found that the specific heat can be described very well by a simple model concerning two components corresponding to vortex normal core and ambient superconducting region, separately. For calculating the specific heat outside the vortex core region, we use the Bardeen-Cooper-Schrieffer (BCS) formalism under the assumption of a narrow distribution of the superconducting gaps. The field-dependent vortex core size in the mixed state of 2H-NbSe2, determined by using this model, can explain the nonlinear field dependence of specific heat coefficient γ(H), which is in good agreement with the previous experimental results and more formal calculations. With the high-temperature specific heat data, we can find that, in the multi-band superconductor 2H-NbSe2, the recovered density of states (or Fermi surface) below Tc under a magnetic field seems not to be gapped again by the charge density wave (CDW) gap, which suggests that the superconducting gap and the CDW gap may open on different Fermi surface sheets.
Di Paola, Vieri; Marijuán, Pedro C; Lahoz-Beltra, Rafael
2004-01-01
Adaptive behavior in unicellular organisms (i.e., bacteria) depends on highly organized networks of proteins governing purposefully the myriad of molecular processes occurring within the cellular system. For instance, bacteria are able to explore the environment within which they develop by utilizing the motility of their flagellar system as well as a sophisticated biochemical navigation system that samples the environmental conditions surrounding the cell, searching for nutrients or moving away from toxic substances or dangerous physical conditions. In this paper we discuss how proteins of the intervening signal transduction network could be modeled as artificial neurons, simulating the dynamical aspects of the bacterial taxis. The model is based on the assumption that, in some important aspects, proteins can be considered as processing elements or McCulloch-Pitts artificial neurons that transfer and process information from the bacterium's membrane surface to the flagellar motor. This simulation of bacterial taxis has been carried out on a hardware realization of a McCulloch-Pitts artificial neuron using an operational amplifier. Based on the behavior of the operational amplifier we produce a model of the interaction between CheY and FliM, elements of the prokaryotic two component system controlling chemotaxis, as well as a simulation of learning and evolution processes in bacterial taxis. On the one side, our simulation results indicate that, computationally, these protein 'switches' are similar to McCulloch-Pitts artificial neurons, suggesting a bridge between evolution and learning in dynamical systems at cellular and molecular levels and the evolutive hardware approach. On the other side, important protein 'tactilizing' properties are not tapped by the model, and this suggests further complexity steps to explore in the approach to biological molecular computing.
Directory of Open Access Journals (Sweden)
Rebecca B Hoyle
Full Text Available Phenotypic differences of genetically identical cells under the same environmental conditions have been attributed to the inherent stochasticity of biochemical processes. Various mechanisms have been suggested, including the existence of alternative steady states in regulatory networks that are reached by means of stochastic fluctuations, long transient excursions from a stable state to an unstable excited state, and the switching on and off of a reaction network according to the availability of a constituent chemical species. Here we analyse a detailed stochastic kinetic model of two-component system signalling in bacteria, and show that alternative phenotypes emerge in the absence of these features. We perform a bifurcation analysis of deterministic reaction rate equations derived from the model, and find that they cannot reproduce the whole range of qualitative responses to external signals demonstrated by direct stochastic simulations. In particular, the mixed mode, where stochastic switching and a graded response are seen simultaneously, is absent. However, probabilistic and equation-free analyses of the stochastic model that calculate stationary states for the mean of an ensemble of stochastic trajectories reveal that slow transcription of either response regulator or histidine kinase leads to the coexistence of an approximate basal solution and a graded response that combine to produce the mixed mode, thus establishing its essential stochastic nature. The same techniques also show that stochasticity results in the observation of an all-or-none bistable response over a much wider range of external signals than would be expected on deterministic grounds. Thus we demonstrate the application of numerical equation-free methods to a detailed biochemical reaction network model, and show that it can provide new insight into the role of stochasticity in the emergence of phenotypic diversity.
Odille, Fabrice G J; Jónsson, Stefán; Stjernqvist, Susann; Rydén, Tobias; Wärnmark, Kenneth
2007-01-01
A general mathematical model for the characterization of the dynamic (kinetically labile) association of supramolecular assemblies in solution is presented. It is an extension of the equal K (EK) model by the stringent use of linear algebra to allow for the simultaneous presence of an unlimited number of different units in the resulting assemblies. It allows for the analysis of highly complex dynamic equilibrium systems in solution, including both supramolecular homo- and copolymers without the recourse to extensive approximations, in a field in which other analytical methods are difficult. The derived mathematical methodology makes it possible to analyze dynamic systems such as supramolecular copolymers regarding for instance the degree of polymerization, the distribution of a given monomer in different copolymers as well as its position in an aggregate. It is to date the only general means to characterize weak supramolecular systems. The model was fitted to NMR dilution titration data by using the program Matlab, and a detailed algorithm for the optimization of the different parameters has been developed. The methodology is applied to a case study, a hydrogen-bonded supramolecular system, salen 4+porphyrin 5. The system is formally a two-component system but in reality a three-component system. This results in a complex dynamic system in which all monomers are associated to each other by hydrogen bonding with different association constants, resulting in homo- and copolymers 4n5m as well as cyclic structures 6 and 7, in addition to free 4 and 5. The system was analyzed by extensive NMR dilution titrations at variable temperatures. All chemical shifts observed at different temperatures were used in the fitting to obtain the DeltaH degrees and DeltaS degrees values producing the best global fit. From the derived general mathematical expressions, system 4+5 could be characterized with respect to above-mentioned parameters.
Two component theory and electron magnetic moment
Veltman, M.J.G.
1998-01-01
The two-component formulation of quantum electrodynamics is studied. The relation with the usual Dirac formulation is exhibited, and the Feynman rules for the two-component form of the theory are presented in terms of familiar objects. The transformation from the Dirac theory to the two-component th
Two component theory and electron magnetic moment
Veltman, M.J.G.
1998-01-01
The two-component formulation of quantum electrodynamics is studied. The relation with the usual Dirac formulation is exhibited, and the Feynman rules for the two-component form of the theory are presented in terms of familiar objects. The transformation from the Dirac theory to the two-component
Bauer, Hannes R.; Kirkman, George; Gundersen, Martin A.
1990-04-01
Temperature, energy, and densities of two electron distribution function components, including an isotropic bulk part and an anisotropic beam, are analyzed for a hydrogen pseudospark and/or backlighted thyratron switch plasma with a peak electron density of 1-3 x 10 to the 15th/cu cm and peak current density of about 10 kA/sq cm. Estimates of a very small cathode-fall width during the conduction phase and high electric field strengths lead to the injection of an electron beam with energies of about 100 eV and density (1-10) x 10 to the 13th/cu cm into a Maxwellian bulk plasma. Collisional and radiative processes of monoenergetic beam electrons, bulk plasma electrons and ions, and atomic hydrogen are modeled by a set of rate equations, and line intensity ratios are compared with measurements. Under these high-current conditions, for an initial density nH2 = 10 to the 16th/cu cm and electron temperature of 0.8-1 eV, the estimated beam density is about (1-10) x 10 to the 13th/cu cm.
Two-component Duality and Strings
Freund, Peter G O
2007-01-01
A phenomenologically successful two-component hadronic duality picture led to Veneziano's amplitude, the fundamental first step to string theory. This picture is briefly recalled and its two components are identified as the open strings (mesons and baryons) and closed strings (Pomeron).
Selected soil thermal conductivity models
Directory of Open Access Journals (Sweden)
Rerak Monika
2017-01-01
Full Text Available The paper presents collected from the literature models of soil thermal conductivity. This is a very important parameter, which allows one to assess how much heat can be transferred from the underground power cables through the soil. The models are presented in table form, thus when the properties of the soil are given, it is possible to select the most accurate method of calculating its thermal conductivity. Precise determination of this parameter results in designing the cable line in such a way that it does not occur the process of cable overheating.
Energy Technology Data Exchange (ETDEWEB)
Herrou, Julien; Foreman, Robert; Fiebig, Aretha; Crosson, Sean (UC)
2012-05-09
PhyR is a hybrid stress regulator conserved in {alpha}-proteobacteria that contains an N-terminal {sigma}-like (SL) domain and a C-terminal receiver domain. Phosphorylation of the receiver domain is known to promote binding of the SL domain to an anti-{sigma} factor. PhyR thus functions as an anti-anti-{sigma} factor in its phosphorylated state. We present genetic evidence that Caulobacter crescentus PhyR is a phosphorylation-dependent stress regulator that functions in the same pathway as {sigma}{sup T} and its anti-{sigma} factor, NepR. Additionally, we report the X-ray crystal structure of PhyR at 1.25 {angstrom} resolution, which provides insight into the mechanism of anti-anti-{sigma} regulation. Direct intramolecular contact between the PhyR receiver and SL domains spans regions {sigma}{sub 2} and {sigma}{sub 4}, likely serving to stabilize the SL domain in a closed conformation. The molecular surface of the receiver domain contacting the SL domain is the structural equivalent of {alpha}4-{beta}5-{alpha}5, which is known to undergo dynamic conformational change upon phosphorylation in a diverse range of receiver proteins. We propose a structural model of PhyR regulation in which receiver phosphorylation destabilizes the intramolecular interaction between SL and receiver domains, thereby permitting regions {sigma}{sub 2} and {sigma}{sub 4} in the SL domain to open about a flexible connector loop and bind anti-{sigma} factor.
Energy Technology Data Exchange (ETDEWEB)
Herrou, Julien; Foreman, Robert; Fiebig, Aretha; Crosson, Sean (UC)
2012-03-30
PhyR is a hybrid stress regulator conserved in {alpha}-proteobacteria that contains an N-terminal {sigma}-like (SL) domain and a C-terminal receiver domain. Phosphorylation of the receiver domain is known to promote binding of the SL domain to an anti-{sigma} factor. PhyR thus functions as an anti-anti-{sigma} factor in its phosphorylated state. We present genetic evidence that Caulobacter crescentus PhyR is a phosphorylation-dependent stress regulator that functions in the same pathway as {sigma}{sup T} and its anti-{sigma} factor, NepR. Additionally, we report the X-ray crystal structure of PhyR at 1.25 {angstrom} resolution, which provides insight into the mechanism of anti-anti-{sigma} regulation. Direct intramolecular contact between the PhyR receiver and SL domains spans regions {sigma}{sub 2} and {sigma}{sub 4}, likely serving to stabilize the SL domain in a closed conformation. The molecular surface of the receiver domain contacting the SL domain is the structural equivalent of {alpha}4-{beta}5-{alpha}5, which is known to undergo dynamic conformational change upon phosphorylation in a diverse range of receiver proteins. We propose a structural model of PhyR regulation in which receiver phosphorylation destabilizes the intramolecular interaction between SL and receiver domains, thereby permitting regions {sigma}{sub 2} and {sigma}{sub 4} in the SL domain to open about a flexible connector loop and bind anti-{sigma} factor.
Goal-Directed Aiming: Two Components but Multiple Processes
Elliott, Digby; Hansen, Steve; Grierson, Lawrence E. M.; Lyons, James; Bennett, Simon J.; Hayes, Spencer J.
2010-01-01
This article reviews the behavioral literature on the control of goal-directed aiming and presents a multiple-process model of limb control. The model builds on recent variants of Woodworth's (1899) two-component model of speed-accuracy relations in voluntary movement and incorporates ideas about dynamic online limb control based on prior…
Inhibitors targeting two-component signal transduction.
Watanabe, Takafumi; Okada, Ario; Gotoh, Yasuhiro; Utsumi, Ryutaro
2008-01-01
A two-component signal transduction system (TCS) is an attractive target for antibacterial agents. In this chapter, we review the TCS inhibitors developed during the past decade and introduce novel drug discovery systems to isolate the inhibitors of the YycG/YycF system, an essential TCS for bacterial growth, in an effort to develop a new class of antibacterial agents.
Two Component Signal Transduction in Desulfovibrio Species
Energy Technology Data Exchange (ETDEWEB)
Luning, Eric; Rajeev, Lara; Ray, Jayashree; Mukhopadhyay, Aindrila
2010-05-17
The environmentally relevant Desulfovibrio species are sulfate-reducing bacteria that are of interest in the bioremediation of heavy metal contaminated water. Among these, the genome of D. vulgaris Hildenborough encodes a large number of two component systems consisting of 72 putative response regulators (RR) and 64 putative histidinekinases (HK), the majority of which are uncharacterized. We classified the D. vulgaris Hildenborough RRs based on their output domains and compared the distribution of RRs in other sequenced Desulfovibrio species. We have successfully purified most RRs and several HKs as His-tagged proteins. We performed phospho-transfer experiments to verify relationships between cognate pairs of HK and RR, and we have also mapped a few non-cognate HK-RR pairs. Presented here are our discoveries from the Desulfovibrio RR categorization and results from the in vitro studies using purified His tagged D. vulgaris HKs and RRs.
Two-Component Description for Relativistic Fermions
Institute of Scientific and Technical Information of China (English)
CHEN Yu-Qi; SANG Wen-Long; YANG Lan-Fei
2009-01-01
We propose a two-component form to describe massive relativistic fermions in gauge theories. Relations between the Green's functions in this form and those in the conventional four-component form are derived. It is shown that the S-matrix elements in both forms are exactly the same. The description of the fermion in the new form simplifies significantly the γ-matrix algebra in the four-component form. In particular, in perturbative calculations the propagator of the fermion is a scalar function. As examples, we use this form to reproduce the relativistic spectrum of hydrodron atom, the S-matrix of e+ e-→μ+ μ- and QED one-loop vacuum polarization of photon.
Two-Component Multi-Parameter Time-Frequency Electromagnetics
Institute of Scientific and Technical Information of China (English)
HuangZhou; DongWeibin; HeTiezhi
2003-01-01
The two-component multi-parameter time-frequency electromagnetic method, used for the development of oilfields,makes use of both the traditional individual conductivity parameters of oil-producing layers and the dispersion information of the conductivity, i.e., the induced polarization parameter. The frequency-domain dispersion data is used to delineate the contacts between oil and water and the time domain dBz/dt component is used to estimate the depths to the un-known reservoirs so as to offer significant data in many aspects for oil exploration and detection.
Tobacco two-component gene NTHK2
Institute of Scientific and Technical Information of China (English)
无
2001-01-01
By using a previously isolated tobacco two- component gene NTHK1 as a probe, we screened a cDNA library and obtained a homologous gene designated NTHK2. Sequencing analysis revealed that NTHK2 encoded a putative ethylene receptor homolog and contained a histidine kinase domain and a receiver domain. In the histidine kinase domain, the histidine at the phosphorylation site was replaced by an asparagine. Southern analysis indicated that NTHK2 was present at low copies in tobacco genome. The expression of NTHK2 was studied using a competitive RT-PCR method. It was found that, in young flower buds, NTHK2 was expressed abundantly, while in other organs or tissues, it was expressed in a low level. When leaf was subjected to wounding (cutting) treatment, NTHK2 expression was increased. When tobacco seedlings were stressed with PEG and heat shock, NTHK2 transcription was also enhanced. Other treatments showed little effects. These results indicated that NTHK2 might be involved in the developmental processes and in plant responses to some environmental stresses.
Graphene Oxide: A One- versus Two-Component Material.
Naumov, Anton; Grote, Fabian; Overgaard, Marc; Roth, Alexandra; Halbig, Christian E; Nørgaard, Kasper; Guldi, Dirk M; Eigler, Siegfried
2016-09-14
The structure of graphene oxide (GO) is a matter of discussion. While established GO models are based on functional groups attached to the carbon framework, another frequently used model claims that GO consists of two components, a slightly oxidized graphene core and highly oxidized molecular species, oxidative debris (OD), adsorbed on it. Those adsorbents are claimed to be the origin for optical properties of GO. Here, we examine this model by preparing GO with a low degree of functionalization, combining it with OD and studying the optical properties of both components and their combination in an artificial two-component system. The analyses of absorption and emission spectra as well as lifetime measurements reveal that properties of the combined system are distinctly different from those of GO. That confirms structural models of GO as a separate oxygenated hexagonal carbon framework with optical properties governed by its internal structure rather than the presence of OD. Understanding the structure of GO allows further reliable interpretation of its optical and electronic properties and enables controlled processing of GO.
TASI 2011 lectures notes: two-component fermion notation and supersymmetry
Martin, Stephen P.
2012-01-01
These notes, based on work with Herbi Dreiner and Howie Haber, discuss how to do practical calculations of cross sections and decay rates using two-component fermion notation, as appropriate for supersymmetry and other beyond-the-Standard-Model theories. Included are a list of two-component fermion Feynman rules for the Minimal Supersymmetric Standard Model, and some example calculations.
Hopping models for ion conduction in noncrystals
DEFF Research Database (Denmark)
Dyre, Jeppe; Schrøder, Thomas
2007-01-01
Ion conduction in noncrystals (glasses, polymers, etc) has a number of properties in common. In fact, from a purely phenomenological point of view, these properties are even more widely observed: ion conduction behaves much like electronic conduction in disordered materials (e.g., amorphous...... semiconductors). These universalities are subject of much current interest, for instance interpreted in the context of simple hopping models. In the present paper we first discuss the temperature dependence of the dc conductivity in hopping models and the importance of the percolation phenomenon. Next......, the experimental (quasi)universality of the ac conductivity is discussed. It is shown that hopping models are able to reproduce the experimental finding that the response obeys time-temperature superposition, while at the same time a broad range of activation energies is involved in the conduction process. Again...
Numerical simulation of two-component flow fluid - fluid in the microchannel T- type
Directory of Open Access Journals (Sweden)
Shebeleva A.A.
2015-01-01
Full Text Available Results of testing methodology for calculating two-phase flows based on the method of fluid in the cells (VOF method, and the procedure for CSF accounting of surface tension forces in the microchannel are considered in the work. Mathematical modeling of two-component flow fluid -fluid in the T- microchannel conducted using this methodology. The following flow regimes studied slug flow, rivulet flow, parallel flow, dispersed (droplet flow, plug flow. Comparison of numerical results with experimental data done. Satisfactory agreement between the calculated values with the experimental data obtained.
Charge-transport model for conducting polymers
Dongmin Kang, Stephen; Jeffrey Snyder, G.
2016-11-01
The growing technological importance of conducting polymers makes the fundamental understanding of their charge transport extremely important for materials and process design. Various hopping and mobility edge transport mechanisms have been proposed, but their experimental verification is limited to poor conductors. Now that advanced organic and polymer semiconductors have shown high conductivity approaching that of metals, the transport mechanism should be discernible by modelling the transport like a semiconductor with a transport edge and a transport parameter s. Here we analyse the electrical conductivity and Seebeck coefficient together and determine that most polymers (except possibly PEDOT:tosylate) have s = 3 and thermally activated conductivity, whereas s = 1 and itinerant conductivity is typically found in crystalline semiconductors and metals. The different transport in polymers may result from the percolation of charge carriers from conducting ordered regions through poorly conducting disordered regions, consistent with what has been expected from structural studies.
Characterising and modelling extended conducted electromagnetic emission
CSIR Research Space (South Africa)
Grobler, Inus
2013-06-01
Full Text Available -1 2013 IEEE Energy Conversion Congress and Exposition Asia (ECCE Downunder), Melbourne, Australia, 3-6 June 2013 Characterising and Modelling Extended Conducted Electromagnetic Emission I Grobler1 and MN Gitau2 Department of Electrical...
No electrostatic supersolitons in two-component plasmas
Energy Technology Data Exchange (ETDEWEB)
Verheest, Frank, E-mail: frank.verheest@ugent.be [Sterrenkundig Observatorium, Universiteit Gent, Krijgslaan 281, B–9000 Gent (Belgium); School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4000 (South Africa); Lakhina, Gurbax S., E-mail: lakhina@iigm.iigs.res.in [Indian Institute of Geomagnetism, New Panvel (W), Navi Mumbai (India); Hellberg, Manfred A., E-mail: hellberg@ukzn.ac.za [School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4000 (South Africa)
2014-06-15
The concept of acoustic supersolitons was introduced for a very specific plasma with five constituents, and discussed only for a single set of plasma parameters. Supersolitons are characterized by having subsidiary extrema on the sides of a typical bipolar electric field signature, or by association with a root beyond double layers in the fully nonlinear Sagdeev pseudopotential description. It was subsequently found that supersolitons could exist in several plasma models having three constituent species, rather than four or five. In the present paper, it is proved that standard two-component plasma models cannot generate supersolitons, by recalling and extending results already in the literature, and by establishing the necessary properties of a more recent model.
Homogenized thermal conduction model for particulate foods
Energy Technology Data Exchange (ETDEWEB)
Chinesta, Francisco [Laboratoire de mecanique des systemes et des procedes, Ecole nationale superieure d' arts et metiers, 151 boulevard de l' Hopital, 75013, Paris (France); Torres, Rafael [Departamento de Ingenieria Mecanica, Universidad Politecnica de Valencia, Camino de Vera s/n. 46071, Valencia (Spain); Ramon, Antonio [AIMPLAS, Gustave Eiffel 4, 46980 Paterna, Valencia (Spain); Rodrigo, Mari Carmen; Rodrigo, Miguel [Instituto de Agroquimica y Tecnologia de Alimentos, Consejo Superior de Investigaciones Cientificas, Apartado de correos 73, 46100, Burjasot (Spain)
2002-12-01
This paper deals with the definition of an equivalent thermal conductivity for particulate foods. An homogenized thermal model is used to asses the effect of particulate spatial distribution and differences in thermal conductivities. We prove that the spatial average of the conductivity can be used in an homogenized heat transfer model if the conductivity differences among the food components are not very large, usually the highest conductivity ratio between the foods components is lower than 5. In the general case we propose to use a standard spatial homogenization procedure. Although the heterogeneity give rise to an anisotropic heat transfer behaviour, this effect is negligible when the food particles are randomly distributed. When we use pre-mixed particulate foods a statistical average can be defined from a small number of possible particle arrangements. (authors)
Modeling Classical Heat Conduction in FLAG
Energy Technology Data Exchange (ETDEWEB)
Ramsey, Scott D. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Hendon, Raymond Cori [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
2015-01-12
The Los Alamos National Laboratory FLAG code contains both electron and ion heat conduction modules; these have been constructed to be directly relevant to user application problems. However, formal code verification of these modules requires quantitative comparison to exact solutions of the underlying mathematical models. A wide variety of exact solutions to the classical heat conduction equation are available for this purpose. This report summarizes efforts involving the representation of the classical heat conduction equation as following from the large electron-ion coupling limit of the electron and ion 3T temperature equations, subject to electron and ion conduction processes. In FLAG, this limiting behavior is quantitatively verified using a simple exact solution of the classical heat conduction equation. For this test problem, both heat conduction modules produce nearly identical spatial electron and ion temperature profiles that converge at slightly less than 2nd order to the corresponding exact solution.
Modeling liver electrical conductivity during hypertonic injection.
Castellví, Quim; Sánchez-Velázquez, Patricia; Moll, Xavier; Berjano, Enrique; Andaluz, Anna; Burdío, Fernando; Bijnens, Bart; Ivorra, Antoni
2017-05-30
Metastases in the liver frequently grow as scattered tumor nodules that neither can be removed by surgical resection nor focally ablated. Previously, we have proposed a novel technique based on irreversible electroporation that may be able to simultaneously treat all nodules in the liver while sparing healthy tissue. The proposed technique requires increasing the electrical conductivity of healthy liver by injecting a hypersaline solution through the portal vein. Aiming to assess the capability of increasing the global conductivity of the liver by means of hypersaline fluids, here, it is presented a mathematical model that estimates the NaCl distribution within the liver and the resulting conductivity change. The model fuses well-established compartmental pharmacokinetic models of the organ with saline injection models used for resuscitation treatments, and it considers changes in sinusoidal blood viscosity because of the hypertonicity of the solution. Here, it is also described a pilot experimental study in pigs in which different volumes of NaCl 20% (from 100 to 200 mL) were injected through the portal vein at different flow rates (from 53 to 171 mL/minute). The in vivo conductivity results fit those obtained by the model, both quantitatively and qualitatively, being able to predict the maximum conductivity with a 14.6% average relative error. The maximum conductivity value was 0.44 second/m, which corresponds to increasing 4 times the mean basal conductivity (0.11 second/m). The results suggest that the presented model is well suited for predicting on liver conductivity changes during hypertonic saline injection. Copyright © 2017 John Wiley & Sons, Ltd.
Modeling of ion conductivity in Nafion membranes
Institute of Scientific and Technical Information of China (English)
YANG Zhen; PENG Xiaofeng; WANG Buxuan; LEE Duujong; DUAN Yuanyuan
2007-01-01
A theoretical investigation was conducted to describe the ion transport behavior in a Nafion Membrane of proton exchange membrane fuel cells (PEMFC).By analyzing the surface energy configuration of the ionic clusters in a Nafion membrane,an equivalent field intensity,Ee,was introduced to facilitate the analysis of surface resistance against ion conduction in the central region of clusters.An expression was derived for ionic conductivity incorporating the influence of surface resistance.A face-centered cubic (FCC)lattice model for a spatial cluster distribution was used to modify the effect of water content on ionic conductivity in the polymeric matrix,i.e.,the regions between clusters.Compared with the available empirical correlations,the new expression showed much better agreement with the available experimental results,which indicates the rationality to consider the structural influence on ion conduction in water-swollen Nation membranes.
Conductivity bounds in probe brane models
Ikeda, Tatsuhiko N; Nakai, Yuichiro
2016-01-01
We discuss upper and lower bounds on the electrical conductivity of finite temperature strongly coupled quantum field theories, holographically dual to probe brane models, within linear response. In a probe limit where disorder is introduced entirely through an inhomogeneous background charge density, we find simple lower and upper bounds on the electrical conductivity in arbitrary dimensions. In field theories in two spatial dimensions, we show that both bounds persist even when disorder is included in the bulk metric. We discuss the challenges with finding sharp lower bounds on conductivity in three or more spatial dimensions when the metric is inhomogeneous.
Two-component jet simulations: Combining analytical and numerical approaches
Matsakos, T; Trussoni, E; Tsinganos, K; Vlahakis, N; Sauty, C; Mignone, A
2009-01-01
Recent observations as well as theoretical studies of YSO jets suggest the presence of two steady components: a disk wind type outflow needed to explain the observed high mass loss rates and a stellar wind type outflow probably accounting for the observed stellar spin down. In this framework, we construct numerical two-component jet models by properly mixing an analytical disk wind solution with a complementary analytically derived stellar outflow. Their combination is controlled by both spatial and temporal parameters, in order to address different physical conditions and time variable features. We study the temporal evolution and the interaction of the two jet components on both small and large scales. The simulations reach steady state configurations close to the initial solutions. Although time variability is not found to considerably affect the dynamics, flow fluctuations generate condensations, whose large scale structures have a strong resemblance to observed YSO jet knots.
Efficient two-component relativistic method for large systems
Energy Technology Data Exchange (ETDEWEB)
Nakai, Hiromi [Department of Chemitsry and Biochemistry, School of Advanced Science and Engineering, Waseda University, Tokyo 169-8555 (Japan); Research Institute for Science and Engineering, Waseda University, Tokyo 169-8555 (Japan); CREST, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012 (Japan); Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Katsura, Kyoto 615-8520 (Japan)
2015-12-31
This paper reviews a series of theoretical studies to develop efficient two-component (2c) relativistic method for large systems by the author’s group. The basic theory is the infinite-order Douglas-Kroll-Hess (IODKH) method for many-electron Dirac-Coulomb Hamiltonian. The local unitary transformation (LUT) scheme can effectively produce the 2c relativistic Hamiltonian, and the divide-and-conquer (DC) method can achieve linear-scaling of Hartree-Fock and electron correlation methods. The frozen core potential (FCP) theoretically connects model potential calculations with the all-electron ones. The accompanying coordinate expansion with a transfer recurrence relation (ACE-TRR) scheme accelerates the computations of electron repulsion integrals with high angular momenta and long contractions.
Budding Transition of Asymmetric Two-component Lipid Domains
Wolff, Jean; Andelman, David
2016-01-01
We propose a model that accounts for the budding transition of asymmetric two-component lipid domains, where the two monolayers (leaflets) have different average compositions controlled by independent chemical potentials. Assuming a coupling between the local curvature and local lipid composition in each of the leaflets, we discuss the morphology and thermodynamic behavior of asymmetric lipid domains. The membrane free-energy contains three contributions: the bending energy, the line tension, and a Landau free-energy for a lateral phase separation. Within a mean-field treatment, we obtain various phase diagrams containing fully budded, dimpled, and flat states as a function of the two leaflet compositions. The global phase behavior is analyzed, and depending on system parameters, the phase diagrams include one-phase, two-phase and three-phase regions. In particular, we predict various phase coexistence regions between different morphologies of domains, which may be observed in multi-component membranes or ves...
The mechanism of signal transduction by two-component systems.
Casino, Patricia; Rubio, Vicente; Marina, Alberto
2010-12-01
Two-component systems, composed of a homodimeric histidine kinase (HK) and a response regulator (RR), are major signal transduction devices in bacteria. Typically the signal triggers HK autophosphorylation at one His residue, followed by phosphoryl transfer from the phospho-His to an Asp residue in the RR. Signal extinction frequently involves phospho-RR dephosphorylation by a phosphatase activity of the HK. Our understanding of these reactions and of the determinants of partner specificity among HK-RR couples has been greatly increased by recent crystal structures and biochemical experiments on HK-RR complexes. Cis-autophosphorylation (one subunit phosphorylates itself) occurs in some HKs while trans-autophosphorylation takes place in others. We review and integrate this new information, discuss the mechanism of the three reactions and propose a model for transmembrane signaling by these systems. Copyright © 2010 Elsevier Ltd. All rights reserved.
Recent progress on the Random Conductance Model
Biskup, Marek
2011-01-01
Recent progress on the understanding of the Random Conductance Model is reviewed and commented. A particular emphasis is on the results on the scaling limit of the random walk among random conductances for almost every realization of the environment, observations on the behavior of the effective resistance as well as the scaling limit of certain models of gradient fields with non-convex interactions. The text is an expanded version of the lecture notes for a course delivered at the 2011 Cornell Summer School on Probability.
An Introductory Idea for Teaching Two-Component Phase Diagrams
Peckham, Gavin D.; McNaught, Ian J.
2011-01-01
The teaching of two-component phase diagrams has attracted little attention in this "Journal," and it is hoped that this article will make a useful contribution. Current physical chemistry textbooks describe two-component phase diagrams adequately, but do so in a piecemeal fashion one section at a time; first solid-liquid equilibria, then…
Two-component micro injection moulding for hearing aid applications
DEFF Research Database (Denmark)
Islam, Aminul; Hansen, Hans Nørgaard; Marhöfer, David Maximilian
2012-01-01
Two-component (2k) injection moulding is an important process technique at the present state of technology, and it is growing rapidly in the field of precision micro moulding. Besides combining different material properties in the same product, two-component moulding can eliminate many assembly s...
Feedback Control of Two-Component Regulatory Systems.
Groisman, Eduardo A
2016-09-08
Two-component systems are a dominant form of bacterial signal transduction. The prototypical two-component system consists of a sensor that responds to a specific input(s) by modifying the output of a cognate regulator. Because the output of a two-component system is the amount of phosphorylated regulator, feedback mechanisms may alter the amount of regulator, and/or modify the ability of a sensor or other proteins to alter the phosphorylation state of the regulator. Two-component systems may display intrinsic feedback whereby the amount of phosphorylated regulator changes under constant inducing conditions and without the participation of additional proteins. Feedback control allows a two-component system to achieve particular steady-state levels, to reach a given steady state with distinct dynamics, to express coregulated genes in a given order, and to activate a regulator to different extents, depending on the signal acting on the sensor.
Carrano, Charles S.; Rino, Charles L.
2016-06-01
We extend the power law phase screen theory for ionospheric scintillation to account for the case where the refractive index irregularities follow a two-component inverse power law spectrum. The two-component model includes, as special cases, an unmodified power law and a modified power law with spectral break that may assume the role of an outer scale, intermediate break scale, or inner scale. As such, it provides a framework for investigating the effects of a spectral break on the scintillation statistics. Using this spectral model, we solve the fourth moment equation governing intensity variations following propagation through two-dimensional field-aligned irregularities in the ionosphere. A specific normalization is invoked that exploits self-similar properties of the structure to achieve a universal scaling, such that different combinations of perturbation strength, propagation distance, and frequency produce the same results. The numerical algorithm is validated using new theoretical predictions for the behavior of the scintillation index and intensity correlation length under strong scatter conditions. A series of numerical experiments are conducted to investigate the morphologies of the intensity spectrum, scintillation index, and intensity correlation length as functions of the spectral indices and strength of scatter; retrieve phase screen parameters from intensity scintillation observations; explore the relative contributions to the scintillation due to large- and small-scale ionospheric structures; and quantify the conditions under which a general spectral break will influence the scintillation statistics.
Finite Element Model of Cardiac Electrical Conduction.
Yin, John Zhihao
1994-01-01
In this thesis, we develop mathematical models to study electrical conduction of the heart. One important pattern of wave propagation of electrical excitation in the heart is reentry which is believed to be the underlying mechanism of some dangerous cardiac arhythmias such as ventricular tachycardia and ventricular fibrillation. We present in this thesis a new ionic channel model of the ventricular cardiac cell membrane to study the microscopic electrical properties of myocardium. We base our model on recent single channel experiment data and a simple physical diffusion model of the calcium channel. Our ionic channel model of myocardium has simpler differential equations and fewer parameters than previous models. Further more, our ionic channel model achieves better results in simulating the strength-interval curve when we connect the membrane patch model to form a one dimensional cardiac muscle strand. We go on to study a finite element model which uses multiple states and non-nearest neighbor interactions to include curvature and dispersion effects. We create a generalized lattice randomization to overcome the artifacts generated by the interaction between the local dynamics and the regularities of the square lattice. We show that the homogeneous model does not display spontaneous wavefront breakup in a reentrant wave propagation once the lattice artifacts have been smoothed out by lattice randomization with a randomization scale larger than the characteristic length of the interaction. We further develop a finite 3-D 3-state heart model which employs a probability interaction rule. This model is applied to the simulation of Body Surface Laplacian Mapping (BSLM) using a cylindrical volume conductor as the torso model. We show that BSLM has a higher spatial resolution than conventional mapping methods in revealing the underlying electrical activities of the heart. The results of these studies demonstrate that mathematical modeling and computer simulation are very
Model calculation of thermal conductivity in antiferromagnets
Energy Technology Data Exchange (ETDEWEB)
Mikhail, I.F.I., E-mail: ifi_mikhail@hotmail.com; Ismail, I.M.M.; Ameen, M.
2015-11-01
A theoretical study is given of thermal conductivity in antiferromagnetic materials. The study has the advantage that the three-phonon interactions as well as the magnon phonon interactions have been represented by model operators that preserve the important properties of the exact collision operators. A new expression for thermal conductivity has been derived that involves the same terms obtained in our previous work in addition to two new terms. These two terms represent the conservation and quasi-conservation of wavevector that occur in the three-phonon Normal and Umklapp processes respectively. They gave appreciable contributions to the thermal conductivity and have led to an excellent quantitative agreement with the experimental measurements of the antiferromagnet FeCl{sub 2}. - Highlights: • The Boltzmann equations of phonons and magnons in antiferromagnets have been studied. • Model operators have been used to represent the magnon–phonon and three-phonon interactions. • The models possess the same important properties as the exact operators. • A new expression for the thermal conductivity has been derived. • The results showed a good quantitative agreement with the experimental data of FeCl{sub 2}.
Measurement and modeling of unsaturated hydraulic conductivity
Perkins, Kim S.; Elango, Lakshmanan
2011-01-01
The unsaturated zone plays an extremely important hydrologic role that influences water quality and quantity, ecosystem function and health, the connection between atmospheric and terrestrial processes, nutrient cycling, soil development, and natural hazards such as flooding and landslides. Unsaturated hydraulic conductivity is one of the main properties considered to govern flow; however it is very difficult to measure accurately. Knowledge of the highly nonlinear relationship between unsaturated hydraulic conductivity (K) and volumetric water content is required for widely-used models of water flow and solute transport processes in the unsaturated zone. Measurement of unsaturated hydraulic conductivity of sediments is costly and time consuming, therefore use of models that estimate this property from more easily measured bulk-physical properties is common. In hydrologic studies, calculations based on property-transfer models informed by hydraulic property databases are often used in lieu of measured data from the site of interest. Reliance on database-informed predicted values with the use of neural networks has become increasingly common. Hydraulic properties predicted using databases may be adequate in some applications, but not others. This chapter will discuss, by way of examples, various techniques used to measure and model hydraulic conductivity as a function of water content, K. The parameters that describe the K curve obtained by different methods are used directly in Richards’ equation-based numerical models, which have some degree of sensitivity to those parameters. This chapter will explore the complications of using laboratory measured or estimated properties for field scale investigations to shed light on how adequately the processes are represented. Additionally, some more recent concepts for representing unsaturated-zone flow processes will be discussed.
Itinerant electron model and conductance of DNA
Institute of Scientific and Technical Information of China (English)
Zhen QU; Da-wei KANG; Xu-tuan GAO; Shi-jie XIE
2008-01-01
DNA (Deoxyribonucleic acid) has recently caught the attention of chemists and physicists.A major reason for this interest is DNA's potential use in nanoelectronie devices,both as a template for assembling nanocireuits and as an element of such circuits.However,the electronic properties of the DNA molecule remain very controversial. Charge-transfer reactions and conductivity measurements show a large variety of possible electronic behavior,ranging from Anderson and bandgap insulators to effective molecular wires and induced superconductors.In this review article,we summarize the wide-ranging experimental and theoretical results of charge transport in DNA.An itinerant electron model is suggested and the effect of the density of itinerant electrons on the conductivity of DNA is studied.Calculations show that a DNA molecule may show conductivity from insulating to metallic,which explains the controversial and profuse electric characteristics of DNA to some extent.
Conductive thermal modeling of Wyoming geothermal systems
Energy Technology Data Exchange (ETDEWEB)
Heasler, H.P.; Ruscetta, C.A.; Foley, D. (eds.)
1981-05-01
A summary of techniques used by the Wyoming Geothermal Resource Assessment Group in defining low-temperature hydrothermal resource areas is presented. Emphasis is placed on thermal modeling techniques appropriate to Wyoming's geologic setting. Thermal parameters discussed include oil-well bottom hole temperatures, heat flow, thermal conductivity, and measured temperature-depth profiles. Examples of the use of these techniques are from the regional study of the Bighorn Basin and two site specific studies within the Basin.
Implementation of Two Component Advective Flow Solution in XSPEC
Debnath, Dipak; Mondal, Santanu
2014-01-01
Spectral and Temporal properties of black hole candidates can be explained reasonably well using Chakrabarti-Titarchuk solution of two component advective flow (TCAF). This model requires two accretion rates, namely, the Keplerian disk accretion rate and the halo accretion rate, the latter being composed of a sub-Keplerian, low angular momentum flow which may or may not develop a shock. In this solution, the relevant parameter is the relative importance of the halo (which creates the Compton cloud region) rate with respect to the Keplerian disk rate (soft photon source). Though this model has been used earlier to manually fit data of several black hole candidates quite satisfactorily, for the first time, we made it user friendly by implementing it into XSPEC software of GSFC/NASA. This enables any user to extract physical parameters of the accretion flows, such as two accretion rates, the shock location, the shock strength etc. for any black hole candidate. We provide some examples of fitting a few cases usin...
Role of functionality in two-component signal transduction: A stochastic study
Maity, Alok Kumar; Bandyopadhyay, Arnab; Chaudhury, Pinaki; Banik, Suman K.
2014-03-01
We present a stochastic formalism for signal transduction processes in a bacterial two-component system. Using elementary mass action kinetics, the proposed model takes care of signal transduction in terms of a phosphotransfer mechanism between the cognate partners of a two-component system, viz., the sensor kinase and the response regulator. Based on the difference in functionality of the sensor kinase, the noisy phosphotransfer mechanism has been studied for monofunctional and bifunctional two-component systems using the formalism of the linear noise approximation. Steady-state analysis of both models quantifies different physically realizable quantities, e.g., the variance, the Fano factor (variance/mean), and mutual information. The resultant data reveal that both systems reliably transfer information of extracellular environment under low external stimulus and in a high-kinase-and-phosphatase regime. We extend our analysis further by studying the role of the two-component system in downstream gene regulation.
Receptor domains of two-component signal transduction systems.
Perry, Julie; Koteva, Kalinka; Wright, Gerard
2011-05-01
Two-component signal transduction systems are found ubiquitously in prokaryotes, and in archaea, fungi, yeast and some plants, where they regulate physiologic and molecular processes at both transcriptional and post-transcriptional levels. Two-component systems sense changes in environmental conditions when a specific ligand binds to the receptor domain of the histidine kinase sensory component. The structures of many histidine kinase receptors are known, including those which sense extracellular and cytoplasmic signals. In this review, we discuss the basic architecture of two-component signalling circuits, including known system ligands, structure and function of both receptor and signalling domains, the chemistry of phosphotransfer, and cross-talk between different two-component pathways. Given the importance of these systems in regulating cellular responses, many biochemical techniques have been developed for their study and analysis. We therefore also review current methods used to study two-component signalling, including a new affinity-based proteomics approach used to study inducible resistance to the antibiotic vancomycin through the VanSR two-component signal transduction system.
Thermal Conductivity Coefficient from Microscopic Models
Nemakhavhani, T E
2016-01-01
Thermal conductivity of hadron matter is studied using a microscopic transport model, which will be used to simulate ultra-relativistic heavy ion collisions at different energy densities, namely the Ultra-relativistic Quantum Molecular Dynamics (UrQMD). The molecular dynamics simulation is performed for a system of light mesons species (pion, rho, kaon) in a box with periodic boundary conditions. The equilibrium state is investigated by studying chemical equilibrium and thermal equilibrium of the system. Particle multiplicity equilibrates with time, and the energy spectra of different light mesons species have the same slopes and common temperatures when thermal equilibrium is reached. Thermal conductivity transport coefficient is calculated from the heat current - current correlations using the Green-Kubo relations.
Histidine phosphotransfer proteins in fungal two-component signal transduction pathways.
Fassler, Jan S; West, Ann H
2013-08-01
The histidine phosphotransfer (HPt) protein Ypd1 is an important participant in the Saccharomyces cerevisiae multistep two-component signal transduction pathway and, unlike the expanded histidine kinase gene family, is encoded by a single gene in nearly all model and pathogenic fungi. Ypd1 is essential for viability in both S. cerevisiae and in Cryptococcus neoformans. These and other aspects of Ypd1 biology, combined with the availability of structural and mutational data in S. cerevisiae, suggest that the essential interactions between Ypd1 and response regulator domains would be a good target for antifungal drug development. The goal of this minireview is to summarize the wealth of data on S. cerevisiae Ypd1 and to consider the potential benefits of conducting related studies in pathogenic fungi.
Two-component perfect fluid in FRW universe
,
2012-01-01
We propose the cosmological model which allows to describe on equal footing the evolution of matter in the universe on the time interval from the inflation till the domination of dark energy. The matter is considered as a two-component perfect fluid imitated by homogeneous scalar fields between which there is energy exchange. Dark energy is represented by the cosmological constant, which is supposed invariable during the whole evolution of the universe. The matter changes its equation of state with time, so that the era of radiation domination in the early universe smoothly passes into the era of a pressureless gas, which then passes into the late-time epoch, when the matter is represented by a gas of low-velocity cosmic strings. The inflationary phase is described as an analytic continuation of the energy density in the very early universe into the region of small negative values of the parameter which characterizes typical time of energy transfer from one matter component to another. The Hubble expansion ra...
Energy Technology Data Exchange (ETDEWEB)
Erena, J.; Arandes, J.M.; Bilbao, J.; Gayubo, A.G. [Universidad del Pais Vasco, Bilbao (Spain). Dept. de Ingeneria Quimica; De Lasa, H.I. [University of Western Ontario, London, ONT (Canada). Chemical Reactor Engineering Centre
2000-05-01
The present study describes the kinetics of syngas transformation into liquid hydrocarbons (boiling point in the gasoline range) using as catalyst a mixture of a metallic component, Cr{sub 2}O{sub 3}-ZnO, and of an acidic component, ZSM-5 zeolite. Experimental results were obtained in an isothermal fixed-bed integral reactor. The validity of several kinetic models, available for methanol synthesis, is analysed and modifications are proposed. These changes involve a rate equation with a CO{sub 2} concentration-dependent term. Catalyst deactivation is also evaluated and the effect of the operating conditions on coke deposition is established. Moreover, the rate of CO conversion and the change of catalytic activity with time-on-stream were described using a kinetic model showing a weak influence of temperature. (Author)
Multiscale Modeling of UHTC: Thermal Conductivity
Lawson, John W.; Murry, Daw; Squire, Thomas; Bauschlicher, Charles W.
2012-01-01
We are developing a multiscale framework in computational modeling for the ultra high temperature ceramics (UHTC) ZrB2 and HfB2. These materials are characterized by high melting point, good strength, and reasonable oxidation resistance. They are candidate materials for a number of applications in extreme environments including sharp leading edges of hypersonic aircraft. In particular, we used a combination of ab initio methods, atomistic simulations and continuum computations to obtain insights into fundamental properties of these materials. Ab initio methods were used to compute basic structural, mechanical and thermal properties. From these results, a database was constructed to fit a Tersoff style interatomic potential suitable for atomistic simulations. These potentials were used to evaluate the lattice thermal conductivity of single crystals and the thermal resistance of simple grain boundaries. Finite element method (FEM) computations using atomistic results as inputs were performed with meshes constructed on SEM images thereby modeling the realistic microstructure. These continuum computations showed the reduction in thermal conductivity due to the grain boundary network.
Two component systems: physiological effect of a third component.
Directory of Open Access Journals (Sweden)
Baldiri Salvado
Full Text Available Signal transduction systems mediate the response and adaptation of organisms to environmental changes. In prokaryotes, this signal transduction is often done through Two Component Systems (TCS. These TCS are phosphotransfer protein cascades, and in their prototypical form they are composed by a kinase that senses the environmental signals (SK and by a response regulator (RR that regulates the cellular response. This basic motif can be modified by the addition of a third protein that interacts either with the SK or the RR in a way that could change the dynamic response of the TCS module. In this work we aim at understanding the effect of such an additional protein (which we call "third component" on the functional properties of a prototypical TCS. To do so we build mathematical models of TCS with alternative designs for their interaction with that third component. These mathematical models are analyzed in order to identify the differences in dynamic behavior inherent to each design, with respect to functionally relevant properties such as sensitivity to changes in either the parameter values or the molecular concentrations, temporal responsiveness, possibility of multiple steady states, or stochastic fluctuations in the system. The differences are then correlated to the physiological requirements that impinge on the functioning of the TCS. This analysis sheds light on both, the dynamic behavior of synthetically designed TCS, and the conditions under which natural selection might favor each of the designs. We find that a third component that modulates SK activity increases the parameter space where a bistable response of the TCS module to signals is possible, if SK is monofunctional, but decreases it when the SK is bifunctional. The presence of a third component that modulates RR activity decreases the parameter space where a bistable response of the TCS module to signals is possible.
Circulation Condition of Two-component Bose-Einstein Condensate
Institute of Scientific and Technical Information of China (English)
无
2001-01-01
In the report we point out that there exists an intrinsic difference in the internal symmetry of the two components spin-1/2 Bose condensates from that of spinor Bose condensates of the atoms with hyperfine states of nonzero integer-spins,which gives rise to a new topological constrain on the circulation for this two-component spin-1/2 Bose condensates.It is shown that the SU(2) symmetry of the spin-1/2 Bose condensate implies a
Itinerant Ferromagnetism in a Polarized Two-Component Fermi Gas
DEFF Research Database (Denmark)
Massignan, Pietro; Yu, Zhenhua; Bruun, Georg
2013-01-01
We analyze when a repulsively interacting two-component Fermi gas becomes thermodynamically unstable against phase separation. We focus on the strongly polarized limit, where the free energy of the homogeneous mixture can be calculated accurately in terms of well-defined quasiparticles, the repul......We analyze when a repulsively interacting two-component Fermi gas becomes thermodynamically unstable against phase separation. We focus on the strongly polarized limit, where the free energy of the homogeneous mixture can be calculated accurately in terms of well-defined quasiparticles...
Two component permeation through thin zeolite MFI membranes
Keizer, K.; Burggraaf, A.J.; Vroon, Z.A.E.P.; Verweij, H.
1998-01-01
Two component permeation measurements have been performed by the Wicke-Kallenbach method on a thin (3 μm) zeolite MFI (Silicalite-1) membrane with molecules of different kinetic diameters, d(k). The membrane was supported by a flat porous α-Al2O3 substrate. The results obtained could be classified i
two component permeation through thin zeolite MFI membranes
Keizer, Klaas; Burggraaf, Anthonie; Burggraaf, A.J.; Vroon, Z.A.E.P.; Vroon, Z.A.E.P.; Verweij, H.
1998-01-01
Two component permeation measurements have been performed by the Wicke–Kallenbach method on a thin (3 μm) zeolite MFI (Silicalite-1) membrane with molecules of different kinetic diameters, dk. The membrane was supported by a flat porous -Al2O3 substrate. The results obtained could be classified in s
TWO-COMPONENT JETS AND THE FANAROFF-RILEY DICHOTOMY
Meliani, Z.; Keppens, R.; Sauty, C.
2010-01-01
Transversely stratified jets are observed in many classes of astrophysical objects, ranging from young stellar objects, mu-quasars, to active galactic nuclei and even in gamma-ray bursts. Theoretical arguments support this transverse stratification of jets with two components induced by intrinsic fe
Two component injection moulding: Present and future perspectives
DEFF Research Database (Denmark)
Islam, Aminul; Hansen, Hans Nørgaard
2009-01-01
Two component injection moulding has widespread industrial applications. Still the technology is yet to gain its full potential in highly demanding and technically challenging applications areas. The smart use of this technology can open the doors for cost effective and convergent manufacturing...
Entanglement Properties in Two-Component Bose-Einstein Condensate
Jiang, Di-You
2016-10-01
We investigate entanglement inseparability and bipartite entanglement of in two-component Bose-Einstein condensate in the presence of the nonlinear interatomic interaction, interspecies interaction. Entanglement inseparability and bipartite entanglement have the similar properties. More entanglement can be generated by adjusting the nonlinear interatomic interaction and control the time interval of the entanglement by adjusting interspecies interaction.
Kox, Linda F.F.; Wösten, Marc M. S. M.; Groisman, Eduardo A.
2000-01-01
The PmrA–PmrB two-component system of Salmonella enterica controls resistance to the peptide antibiotic polymyxin B and to several antimicrobial proteins from human neutrophils. Transcription of PmrA-activated genes is induced by high iron, but can also be promoted by growth in low magnesium in a process that requires another two-component system, PhoP–PhoQ. Here, we define the genetic basis for the interaction between the PhoP–PhoQ and PmrA–PmrB systems. We have identified pmrD as a PhoP-act...
The dynamics of nonstationary solutions in one-dimensional two-component Bose-Einstein condensates
Institute of Scientific and Technical Information of China (English)
Lü Bin-Bin; Hao Xue; Tian Qiang
2011-01-01
This paper investigates the dynamical properties of nonstationary solutions in one-dimensional two-component Bose-Einstein condensates. It gives three kinds of stationary solutions to this model and develops a general method of constructing nonstationary solutions. It obtains the unique features about general evolution and soliton evolution of nonstationary solutions in this model.
A two-component NZRI metamaterial based rectangular cloak
Islam, Sikder Sunbeam; Faruque, Mohammd Rashed Iqbal; Islam, Mohammad Tariqul
2015-10-01
A new two-component, near zero refractive index (NZRI) metamaterial is presented for electromagnetic rectangular cloaking operation in the microwave range. In the basic design a pi-shaped, metamaterial was developed and its characteristics were investigated for the two major axes (x and z-axis) wave propagation through the material. For the z-axis wave propagation, it shows more than 2 GHz bandwidth and for the x-axis wave propagation; it exhibits more than 1 GHz bandwidth of NZRI property. The metamaterial was then utilized in designing a rectangular cloak where a metal cylinder was cloaked perfectly in the C-band area of microwave regime. The experimental result was provided for the metamaterial and the cloak and these results were compared with the simulated results. This is a novel and promising design for its two-component NZRI characteristics and rectangular cloaking operation in the electromagnetic paradigm.
On a periodic two-component Hunter-Saxton equation
Kohlmann, Martin
2011-01-01
We determine the solution of the geodesic equation associated with a periodic two-component Hunter-Saxton system on a semidirect product obtained from the diffeomorphism group of the circle, modulo rigid rotations, and a space of scalar functions. In particular, we compute the time of breakdown of the geodesic flow. As a further goal, we establish a local well-posedness result for the two-component Hunter-Saxton system in the smooth category. The paper gets in line with some recent results for the generalized Hunter-Saxton equation provided by Escher, Wu and Wunsch in [J. Escher, Preprint 2010] and [H. Wu, M. Wunsch, arXiv:1009.1688v1 [math.AP
Two Component Injection Moulding for Moulded Interconnect Devices
DEFF Research Database (Denmark)
Islam, Aminul
The moulded interconnect devices (MIDs) contain huge possibilities for many applications in micro electro-mechanical-systems because of their potential in reducing the number of components, process steps and finally in miniaturization of the product. Among the available MID process chains, two...... component (2k) injection moulding is one of the most industrially adaptive processes. However, the use of two component injection moulding for MID fabrication, with circuit patterns in sub-millimeter range, is still a big challenge. This book searches for the technical difficulties associated...... with the process and makes attempts to overcome those challenges. In search of suitable polymer materials for MID applications, potential materials are characterized in terms of polymer-polymer bond strength, polymer-polymer interface quality and selective metallization. The experimental results find the factors...
Two-component microinjection moulding for MID fabrication
DEFF Research Database (Denmark)
Islam, Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben
2010-01-01
Moulded interconnect devices (MIDs) are plastic substrates with electrical infrastructure. The fabrication of MIDs is usually based on injection moulding, and different process chains may be identified from this starting point. The use of MIDs has been driven primarily by the automotive sector......, but recently, the medical sector seems more and more interested. In particular, the possibility of miniaturisation of three-dimensional components with electrical infrastructure is attractive. The present paper describes possible manufacturing routes and challenges of miniaturised MIDs based on two......-component injection moulding and subsequent metallisation. This technology promises cost effective and convergent manufacturing approaches for both macro- and microapplications. This paper presents the results of industrial MID production based on two-component injection moulding and discusses the important issues...
The Fractional Virial Potential Energy in Two-Component Systems
Directory of Open Access Journals (Sweden)
Caimmi, R.
2008-12-01
Full Text Available Two-component systems are conceived as macrogases, and the related equation of state is expressed using the virial theorem for subsystems, under the restriction of homeoidally striated density profiles. Explicit calculations are performed for a useful reference case and a few cases of astrophysical interest, both with and without truncation radius. Shallower density profiles are found to yield an equation of state, $phi=phi(y,m$, characterized (for assigned values of the fractional mass, $m=M_j/ M_i$ by the occurrence of two extremum points, a minimum and a maximum, as found in an earlier attempt. Steeper density profiles produce a similar equation of state, which implies that a special value of $m$ is related to a critical curve where the above mentioned extremum points reduce to a single horizontal inflexion point, and curves below the critical one show no extremum points. The similarity of the isofractional mass curves to van der Waals' isothermal curves, suggests the possibility of a phase transition in a bell-shaped region of the $({sf O}yphi$ plane, where the fractional truncation radius along a selected direction is $y=R_j/R_i$, and the fractional virial potential energy is $phi=(E_{ji}_mathrm{vir}/(E_{ij}_mathrm{vir}$. Further investigation is devoted to mass distributions described by Hernquist (1990 density profiles, for which an additional relation can be used to represent a sample of $N=16$ elliptical galaxies (EGs on the $({sf O}yphi$ plane. Even if the evolution of elliptical galaxies and their hosting dark matter (DM haloes, in the light of the model, has been characterized by equal fractional mass, $m$, and equal scaled truncation radius, or concentration, $Xi_u=R_u/r_u^dagger$, $u=i,j$, still it cannot be considered as strictly homologous, due to different values of fractional truncation radii, $y$, or fractional scaling radii, $y^dagger=r_j^dagger/r_i^dagger$, deduced from sample objects.
Interaction Analysis of a Two-Component System Using Nanodiscs.
Directory of Open Access Journals (Sweden)
Patrick Hörnschemeyer
Full Text Available Two-component systems are the major means by which bacteria couple adaptation to environmental changes. All utilize a phosphorylation cascade from a histidine kinase to a response regulator, and some also employ an accessory protein. The system-wide signaling fidelity of two-component systems is based on preferential binding between the signaling proteins. However, information on the interaction kinetics between membrane embedded histidine kinase and its partner proteins is lacking. Here, we report the first analysis of the interactions between the full-length membrane-bound histidine kinase CpxA, which was reconstituted in nanodiscs, and its cognate response regulator CpxR and accessory protein CpxP. Using surface plasmon resonance spectroscopy in combination with interaction map analysis, the affinity of membrane-embedded CpxA for CpxR was quantified, and found to increase by tenfold in the presence of ATP, suggesting that a considerable portion of phosphorylated CpxR might be stably associated with CpxA in vivo. Using microscale thermophoresis, the affinity between CpxA in nanodiscs and CpxP was determined to be substantially lower than that between CpxA and CpxR. Taken together, the quantitative interaction data extend our understanding of the signal transduction mechanism used by two-component systems.
Rewiring the specificity of two-component signal transduction systems.
Skerker, Jeffrey M; Perchuk, Barrett S; Siryaporn, Albert; Lubin, Emma A; Ashenberg, Orr; Goulian, Mark; Laub, Michael T
2008-06-13
Two-component signal transduction systems are the predominant means by which bacteria sense and respond to environmental stimuli. Bacteria often employ tens or hundreds of these paralogous signaling systems, comprised of histidine kinases (HKs) and their cognate response regulators (RRs). Faithful transmission of information through these signaling pathways and avoidance of detrimental crosstalk demand exquisite specificity of HK-RR interactions. To identify the determinants of two-component signaling specificity, we examined patterns of amino acid coevolution in large, multiple sequence alignments of cognate kinase-regulator pairs. Guided by these results, we demonstrate that a subset of the coevolving residues is sufficient, when mutated, to completely switch the substrate specificity of the kinase EnvZ. Our results shed light on the basis of molecular discrimination in two-component signaling pathways, provide a general approach for the rational rewiring of these pathways, and suggest that analyses of coevolution may facilitate the reprogramming of other signaling systems and protein-protein interactions.
Modulational instability of two-component Bose-Einstein condensates in an optical lattice
Jin, G R; Nahm, K; Jin, Guang-Ri; Kim, Chul Koo; Nahm, Kyun
2004-01-01
We study modulational instability of two-component Bose-Einstein condensates in a deep optical lattice, which is modelled as a coupled discrete nonlinear Schr\\"{o}dinger equation. The excitation spectrum and the modulational instability condition of the total system are presented analytically. In the long-wavelength limit, our results agree with the homogeneous two-component Bose-Einstein condensates case. The discreteness effects result in the appearance of the modulational instability for the condensates in miscible region. The numerical calculations confirm our analytical results and show that the interspecies coupling can transfer the instability from one component to another.
Mapder, Tarunendu; Banik, Suman K
2016-01-01
Studies on the role of fluctuations in signal propagation and on gene regulation in monoclonal bacterial population have been extensively pursued based on the machinery of two-component system. The bacterial two-component system shows noise utilisation through its inherent plasticity. The fluctuations propagation takes place using the phosphotransfer module and the feedback mechanism during gene regulation. To delicately observe the noisy kinetics the generic cascade needs stochastic investigation at the mRNA and protein levels. To this end, we propose a theoretical framework to investigate the noisy signal transduction in a generic two-component system. The model shows reliability in information transmission through quantification of several statistical measures. We further extend our analysis to observe the protein distribution in a population of cells. Through numerical simulation, we identify the regime of the kinetic parameter set that generates a stability switch in the steady state distribution of prot...
Two-Component Signal Transduction Systems in the Cyanobacterium Synechocystis sp. PCC 6803
Institute of Scientific and Technical Information of China (English)
LIU Xingguo; HUANG Wei; WU Qingyu
2006-01-01
Two-component systems are signal transduction systems which enable bacteria to regulate cellular functions in response to changing environmental conditions. The unicellular Synechocystis sp. PCC 6803 has become a model organism for a range of biochemical and molecular biology studies aiming at investigating environmental stress response. The publication of the complete genome sequence of the cyanobacterium Synechocystis sp. PCC 6803 provided a tremendous stimulus for research in this field, and at least 80 open reading frames were identified as members of the two-component signal transduction systems in this single species of cyanobacteria. To date, functional roles have been determined for only a limited number of such proteins. This review summarizes our current knowledge about the two-component signal transduction systems in Synechocystis sp. PCC 6803 and describes recent achievements in elucidating the functional roles of these systems.
Impacts of photon bending on observational aspects of Two Component Advective Flow
Chatterjee, Arka
2016-01-01
Nature of photon trajectories in a curved spacetime around black holes are studied without constraining their motion to any plane. Impacts of photon bending are separately scrutinized for Keplerian and CENBOL components of Two Component Advective Flow (TCAF) model. Parameters like Red shift, Bolometric Flux, temperature profile and time of arrival of photons are also computed.
Two component micro injection moulding for moulded interconnect devices
DEFF Research Database (Denmark)
Islam, Aminul
2008-01-01
Moulded interconnect devices (MIDs) contain huge possibilities for many applications in micro electro-mechanical-systems because of their capability of reducing the number of components, process steps and finally in miniaturization of the product. Among the available MID process chains, two...... and a reasonable adhesion between them. • Selective metallization of the two component plastic part (coating one polymer with metal and leaving the other one uncoated) To overcome these two main issues in MID fabrication for micro applications, the current Ph.D. project explores the technical difficulties...
Two-component Fermi gas in a Harmonic Trap
Yi, X X; Cui, H T; Zhang, C M
2002-01-01
We consider a mixture of two-component Fermi gases at low temperature. The density profile of this degenerate Fermi gas is calculated under the semiclassical approximation. The results show that the fermion-fermion interactions make a large correction to the density profile at low temperature. The phase separation of such a mixture is also discussed for both attractive and repulsive interatomic interactions, and the numerical calculations demonstrate the exist of a stable temperature region $T_{c1}
Interaction potentials and thermodynamic properties of two component semiclassical plasma
Energy Technology Data Exchange (ETDEWEB)
Ramazanov, T. S.; Moldabekov, Zh. A.; Ismagambetova, T. N. [Al-Farabi Kazakh National University, IETP, 71 al-Farabi Av., Almaty 050040 (Kazakhstan); Gabdullin, M. T. [Al-Farabi Kazakh National University, NNLOT, 71 al-Farabi Av., Almaty 050040 (Kazakhstan)
2014-01-15
In this paper, the effective interaction potential in two component semiclassical plasma, taking into account the long-range screening and the quantum-mechanical diffraction effects at short distances, is obtained on the basis of dielectric response function method. The structural properties of the semiclassical plasma are considered. The thermodynamic characteristics (the internal energy and the equation of state) are calculated using two methods: the method of effective potentials and the method of micropotentials with screening effect taken into account by the Ornstein-Zernike equation in the HNC approximation.
Itinerant ferromagnetism in a polarized two-component Fermi gas.
Massignan, Pietro; Yu, Zhenhua; Bruun, Georg M
2013-06-07
We analyze when a repulsively interacting two-component Fermi gas becomes thermodynamically unstable against phase separation. We focus on the strongly polarized limit, where the free energy of the homogeneous mixture can be calculated accurately in terms of well-defined quasiparticles, the repulsive polarons. Phase diagrams as a function of polarization, temperature, mass imbalance, and repulsive polaron energy, as well as scattering length and range parameter, are provided. We show that the lifetime of the repulsive polaron increases significantly with the interaction range and the mass of the minority atoms, raising the prospects of detecting the transition to the elusive itinerant ferromagnetic state with ultracold atoms.
Two component micro injection molding for MID fabrication
DEFF Research Database (Denmark)
Islam, Mohammad Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben
2009-01-01
Molded Interconnect Devices (MIDs) are plastic substrates with electrical infrastructure. The fabrication of MIDs is usually based on injection molding and different process chains may be identified from this starting point. The use of MIDs has been driven primarily by the automotive sector......, but recently the medical sector seems more and more interested. In particular the possibility of miniaturization of 3D components with electrical infrastructure is attractive. The paper describes possible manufacturing routes and challenges of miniaturized MIDs based on two component micro injection molding...
Evolution of two-component signal transduction systems.
Capra, Emily J; Laub, Michael T
2012-01-01
To exist in a wide range of environmental niches, bacteria must sense and respond to a variety of external signals. A primary means by which this occurs is through two-component signal transduction pathways, typically composed of a sensor histidine kinase that receives the input stimuli and then phosphorylates a response regulator that effects an appropriate change in cellular physiology. Histidine kinases and response regulators have an intrinsic modularity that separates signal input, phosphotransfer, and output response; this modularity has allowed bacteria to dramatically expand and diversify their signaling capabilities. Recent work has begun to reveal the molecular basis by which two-component proteins evolve. How and why do orthologous signaling proteins diverge? How do cells gain new pathways and recognize new signals? What changes are needed to insulate a new pathway from existing pathways? What constraints are there on gene duplication and lateral gene transfer? Here, we review progress made in answering these questions, highlighting how the integration of genome sequence data with experimental studies is providing major new insights.
The Evolution of Two-Component Signal Transduction Systems
Capra, Emily J.; Laub, Michael T.
2014-01-01
To exist in a wide range of environmental niches, bacteria must sense and respond to a myriad of external signals. A primary means by which this occurs is through two-component signal transduction pathways, typically comprised of a histidine kinase that receives the input stimuli and a response regulator that effects an appropriate change in cellular physiology. Histidine kinases and response regulators have an intrinsic modularity that separates signal input, phosphotransfer, and output response; this modularity has allowed bacteria to dramatically expand and diversify their signaling capabilities. Recent work has begun to reveal the molecular basis by which two-component proteins evolve. How and why do orthologous signaling proteins diverge? How do cells gain new pathways and recognize new signals? What changes are needed to insulate a new pathway from existing pathways? What constraints are there on gene duplication and lateral gene transfer? Here, we review progress made in answering these questions, highlighting how the integration of genome sequence data with experimental studies is providing major new insights. PMID:22746333
Kinetics and mechanism of the oxidation process of two-component Fe-Al alloys
Przewlocka, H.; Siedlecka, J.
1982-01-01
The oxidation process of two-component Fe-Al alloys containing up to 7.2% Al and from 18 to 30% Al was studied. Kinetic measurements were conducted using the isothermal gravimetric method in the range of 1073-1223 K and 1073-1373 K for 50 hours. The methods used in studies of the mechanism of oxidation included: X-ray microanalysis, X-ray structural analysis, metallographic analysis and marker tests.
A Simple Holographic Model of Nonlinear Conductivity
Horowitz, Gary T; Santos, Jorge E
2013-01-01
We present a simple analytic gravitational solution which describes the holographic dual of a 2+1-dimensional conductor which goes beyond the usual linear response. In particular it includes Joule heating. We find that the nonlinear frequency-dependent conductivity is a constant. Surprisingly, the pressure remains isotropic. We also apply an electric field to a holographic insulator and show that there is a maximum electric field below which it can remain an insulator. Above this critical value, we argue that it becomes a conductor due to pair creation of charged particles. Finally, we study 1+1 and 3+1 dimensional conductors at the nonlinear level; here exact solutions are not available and a perturbative analysis shows that the current becomes time dependent, but in a way that is captured by a time-dependent effective temperature.
Trapping in the random conductance model
Biskup, M; Rozinov, A; Vandenberg-Rodes, A
2012-01-01
We consider random walks on $\\Z^d$ among nearest-neighbor random conductances which are i.i.d., positive, bounded uniformly from above but whose support extends all the way to zero. Our focus is on the detailed properties of the paths of the random walk conditioned to return back to the starting point at time $2n$. We show that in the situations when the heat kernel exhibits subdiffusive decay --- which is known to occur in dimensions $d\\ge4$ --- the walk gets trapped for a time of order $n$ in a small spatial region. This shows that the strategy used earlier to infer subdiffusive lower bounds on the heat kernel in specific examples is in fact dominant. In addition, we settle a conjecture concerning the worst possible subdiffusive decay in four dimensions.
Trapping in the Random Conductance Model
Biskup, M.; Louidor, O.; Rozinov, A.; Vandenberg-Rodes, A.
2013-01-01
We consider random walks on ℤ d among nearest-neighbor random conductances which are i.i.d., positive, bounded uniformly from above but whose support extends all the way to zero. Our focus is on the detailed properties of the paths of the random walk conditioned to return back to the starting point at time 2 n. We show that in the situations when the heat kernel exhibits subdiffusive decay—which is known to occur in dimensions d≥4—the walk gets trapped for a time of order n in a small spatial region. This shows that the strategy used earlier to infer subdiffusive lower bounds on the heat kernel in specific examples is in fact dominant. In addition, we settle a conjecture concerning the worst possible subdiffusive decay in four dimensions.
Microscale Heat Conduction Models and Doppler Feedback
Energy Technology Data Exchange (ETDEWEB)
Hawari, Ayman I. [North Carolina State Univ., Raleigh, NC (United States); Ougouag, Abderrafi [Idaho National Lab. (INL), Idaho Falls, ID (United States)
2015-01-22
The objective of this project is to establish an approach for providing the fundamental input that is needed to estimate the magnitude and time-dependence of the Doppler feedback mechanism in Very High Temperature reactors. This mechanism is the foremost contributor to the passive safety of gas-cooled, graphite-moderated high temperature reactors that use fuel based on Tristructural-Isotropic (TRISO) coated particles. Therefore, its correct prediction is essential to the conduct of safety analyses for these reactors. Since the effect is directly dependent on the actual temperature reached by the fuel during transients, the underlying phenomena of heat deposition, heat transfer and temperature rise must be correctly predicted. To achieve the above objective, this project will explore an approach that accounts for lattice effects as well as local temperature variations and the correct definition of temperature and related local effects.
Two-component systems and toxinogenesis regulation in Clostridium botulinum.
Connan, Chloé; Popoff, Michel R
2015-05-01
Botulinum neurotoxins (BoNTs) are the most potent toxins ever known. They are mostly produced by Clostridium botulinum but also by other clostridia. BoNTs associate with non-toxic proteins (ANTPs) to form complexes of various sizes. Toxin production is highly regulated through complex networks of regulatory systems involving an alternative sigma factor, BotR, and at least 6 recently described two-component systems (TCSs). TCSs allow bacteria to sense environmental changes and to respond to various stimuli by regulating the expression of specific genes at a transcriptional level. Several environmental stimuli have been identified to positively or negatively regulate toxin synthesis; however, the link between environmental stimuli and TCSs is still elusive. This review aims to highlight the role of TCSs as a central point in the regulation of toxin production in C. botulinum.
Exact two-component relativistic energy band theory and application
Energy Technology Data Exchange (ETDEWEB)
Zhao, Rundong; Zhang, Yong; Xiao, Yunlong; Liu, Wenjian, E-mail: liuwj@pku.edu.cn [Beijing National Laboratory for Molecular Sciences, Institute of Theoretical and Computational Chemistry, State Key Laboratory of Rare Earth Materials Chemistry and Applications, College of Chemistry and Molecular Engineering, and Center for Computational Science and Engineering, Peking University, Beijing 100871 (China)
2016-01-28
An exact two-component (X2C) relativistic density functional theory in terms of atom-centered basis functions is proposed for relativistic calculations of band structures and structural properties of periodic systems containing heavy elements. Due to finite radial extensions of the local basis functions, the periodic calculation is very much the same as a molecular calculation, except only for an Ewald summation for the Coulomb potential of fluctuating periodic monopoles. For comparison, the nonrelativistic and spin-free X2C counterparts are also implemented in parallel. As a first and pilot application, the band gaps, lattice constants, cohesive energies, and bulk moduli of AgX (X = Cl, Br, I) are calculated to compare with other theoretical results.
Dynamics of two-component membranes surrounded by viscoelastic media.
Komura, Shigeyuki; Yasuda, Kento; Okamoto, Ryuichi
2015-11-01
We discuss the dynamics of two-component fluid membranes which are surrounded by viscoelastic media. We assume that membrane-embedded proteins can diffuse laterally and induce a local membrane curvature. The mean squared displacement of a tagged membrane segment is obtained as a generalized Einstein relation. When the elasticity of the surrounding media obeys a power-law behavior in frequency, an anomalous diffusion of the membrane segment is predicted. We also consider the situation where the proteins generate active non-equilibrium forces. The generalized Einstein relation is further modified by an effective temperature that depends on the force dipole energy. The obtained generalized Einstein relations are useful for membrane microrheology experiments.
Exact two-component relativistic energy band theory and application.
Zhao, Rundong; Zhang, Yong; Xiao, Yunlong; Liu, Wenjian
2016-01-28
An exact two-component (X2C) relativistic density functional theory in terms of atom-centered basis functions is proposed for relativistic calculations of band structures and structural properties of periodic systems containing heavy elements. Due to finite radial extensions of the local basis functions, the periodic calculation is very much the same as a molecular calculation, except only for an Ewald summation for the Coulomb potential of fluctuating periodic monopoles. For comparison, the nonrelativistic and spin-free X2C counterparts are also implemented in parallel. As a first and pilot application, the band gaps, lattice constants, cohesive energies, and bulk moduli of AgX (X = Cl, Br, I) are calculated to compare with other theoretical results.
Recent advances in description of few two-component fermions
Kartavtsev, O I
2012-01-01
Overview of the recent advances in description of the few two-component fermions is presented. The zero-range interaction limit is generally considered to discuss the principal aspects of the few-body dynamics. Significant attention is paid to detailed description of two identical fermions of mass $m$ and a distinct particle of mass $m_1$; two universal $L^P = 1^-$ bound states arise for mass ratio $m/m_1$ increasing up to the critical value $\\mu_c \\approx 13.607$, beyond which the Efimov effect takes place. The topics considered include rigorous treatment of the few-fermion problem in the zero-range interaction limit, low-dimensional results, the four-body energy spectrum, crossover of the energy spectra for $m/m_1$ near the critical value $\\mu_c $, and properties of potential-dependent states. At last, enlisted are the problems, whose solution is in due course.
Molecular Mechanisms of Two-Component Signal Transduction.
Zschiedrich, Christopher P; Keidel, Victoria; Szurmant, Hendrik
2016-09-25
Two-component systems (TCS) comprising sensor histidine kinases and response regulator proteins are among the most important players in bacterial and archaeal signal transduction and also occur in reduced numbers in some eukaryotic organisms. Given their importance to cellular survival, virulence, and cellular development, these systems are among the most scrutinized bacterial proteins. In the recent years, a flurry of bioinformatics, genetic, biochemical, and structural studies have provided detailed insights into many molecular mechanisms that underlie the detection of signals and the generation of the appropriate response by TCS. Importantly, it has become clear that there is significant diversity in the mechanisms employed by individual systems. This review discusses the current knowledge on common themes and divergences from the paradigm of TCS signaling. An emphasis is on the information gained by a flurry of recent structural and bioinformatics studies.
Bond strength of two component injection moulded MID
DEFF Research Database (Denmark)
Islam, Mohammad Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben
2006-01-01
Most products of the future will require industrially adapted, cost effective production processes and on this issue two-component (2K) injection moulding is a potential candidate for MID manufacturing. MID based on 2k injection moulded plastic part with selectively metallised circuit tracks allows...... the integration of electrical and mechanical functionalities in a real 3D structure. If 2k injection moulding is applied with two polymers, of which one is plateable and the other is not, it will be possible to make 3D electrical structures directly on the component. To be applicable in the real engineering field...... the two different plastic materials in the MID structure require good bonding between them. This paper finds suitable combinations of materials for MIDs from both bond strength and metallisation view-point. Plastic parts were made by two-shot injection moulding and the effects of some important process...
Determinants of specificity in two-component signal transduction.
Podgornaia, Anna I; Laub, Michael T
2013-04-01
Maintaining the faithful flow of information through signal transduction pathways is critical to the survival and proliferation of organisms. This problem is particularly challenging as many signaling proteins are part of large, paralogous families that are highly similar at the sequence and structural levels, increasing the risk of unwanted cross-talk. To detect environmental signals and process information, bacteria rely heavily on two-component signaling systems comprised of sensor histidine kinases and their cognate response regulators. Although most species encode dozens of these signaling pathways, there is relatively little cross-talk, indicating that individual pathways are well insulated and highly specific. Here, we review the molecular mechanisms that enforce this specificity. Further, we highlight recent studies that have revealed how these mechanisms evolve to accommodate the introduction of new pathways by gene duplication. Copyright © 2013 Elsevier Ltd. All rights reserved.
Rewiring two-component signal transduction with small RNAs.
Göpel, Yvonne; Görke, Boris
2012-04-01
Bacterial two-component systems (TCSs) and small regulatory RNAs (sRNAs) form densely interconnected networks that integrate and transduce information from the environment into fine-tuned changes of gene expression. Many TCSs control target genes indirectly through regulation of sRNAs, which in turn regulate gene expression by base-pairing with mRNAs or targeting a protein. Conversely, sRNAs may control TCS synthesis, thereby recruiting the TCS regulon to other regulatory networks. Several TCSs control expression of multiple homologous sRNAs providing the regulatory networks with further flexibility. These sRNAs act redundantly, additively or hierarchically on targets. The regulatory speed of sRNAs and their unique features in gene regulation make them ideal players extending the flexibility, dynamic range or timing of TCS signaling. Copyright © 2011 Elsevier Ltd. All rights reserved.
Auxiliary phosphatases in two-component signal transduction.
Silversmith, Ruth E
2010-04-01
Signal termination in two-component systems occurs by loss of the phosphoryl group from the response regulator protein. This review explores our current understanding of the structures, catalytic mechanisms and means of regulation of the known families of phosphatases that catalyze response regulator dephosphorylation. The CheZ and CheC/CheX/FliY families, despite different overall structures, employ identical catalytic strategies using an amide side chain to orient a water molecule for in-line attack of the aspartyl phosphate. Spo0E phosphatases contain sequence and structural features that suggest a strategy similar to the chemotaxis phosphatases but the mechanism used by the Rap phosphatases is not yet elucidated. Identification of features shared by phosphatase families may aid in the identification of currently unrecognized classes of response regulator phosphatases. Copyright 2010 Elsevier Ltd. All rights reserved.
How insects overcome two-component plant chemical defence
DEFF Research Database (Denmark)
Pentzold, Stefan; Zagrobelny, Mika; Rook, Frederik;
2014-01-01
Insect herbivory is often restricted by glucosylated plant chemical defence compounds that are activated by plant β-glucosidases to release toxic aglucones upon plant tissue damage. Such two-component plant defences are widespread in the plant kingdom and examples of these classes of compounds...... are alkaloid, benzoxazinoid, cyanogenic and iridoid glucosides as well as glucosinolates and salicinoids. Conversely, many insects have evolved a diversity of counteradaptations to overcome this type of constitutive chemical defence. Here we discuss that such counter-adaptations occur at different time points......-component chemical defence. These adaptations include host plant choice, non-disruptive feeding guilds and various physiological adaptations as well as metabolic enzymatic strategies of the insect’s digestive system. Furthermore, insect adaptations often act in combination, may exist in both generalists...
Parallel TREE code for two-component ultracold plasma analysis
Jeon, Byoungseon; Kress, Joel D.; Collins, Lee A.; Grønbech-Jensen, Niels
2008-02-01
The TREE method has been widely used for long-range interaction N-body problems. We have developed a parallel TREE code for two-component classical plasmas with open boundary conditions and highly non-uniform charge distributions. The program efficiently handles millions of particles evolved over long relaxation times requiring millions of time steps. Appropriate domain decomposition and dynamic data management were employed, and large-scale parallel processing was achieved using an intermediate level of granularity of domain decomposition and ghost TREE communication. Even though the computational load is not fully distributed in fine grains, high parallel efficiency was achieved for ultracold plasma systems of charged particles. As an application, we performed simulations of an ultracold neutral plasma with a half million particles and a half million time steps. For the long temporal trajectories of relaxation between heavy ions and light electrons, large configurations of ultracold plasmas can now be investigated, which was not possible in past studies.
Modelling electrolyte conductivity in a water electrolyzer cell
DEFF Research Database (Denmark)
Caspersen, Michael; Kirkegaard, Julius Bier
2012-01-01
An analytical model describing the hydrogen gas evolution under natural convection in an electrolyzer cell is developed. Main purpose of the model is to investigate the electrolyte conductivity through the cell under various conditions. Cell conductivity is calculated from a parallel resistor app...... for electrolyte conductivity from combinations of pressure, current density and electrolyte width among others....
Quantum Ising model coupled with conducting electrons
Energy Technology Data Exchange (ETDEWEB)
Yamashita, Yasufumi; Yonemitsu, Kenji [Institute for Molecular Science, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585 (Japan); Graduate University for Advanced studies, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585 (Japan)
2005-01-01
The effect of photo-doping on the quantum paraelectric SrTiO{sub 3} is studied by using the one-dimensional quantum Ising model, where the Ising spin describes the effective lattice polarization of an optical phonon. Two types of electron-phonon couplings are introduced through the modulation of transfer integral via lattice deformations. After the exact diagonalization and the perturbation studies, we find that photo-induced low-density carriers can drastically alter quantum fluctuations when the system locates near the quantum critical point between the quantum para- and ferro-electric phases.
Quantum Ising model coupled with conducting electrons
Yamashita, Yasufumi; Yonemitsu, Kenji
2005-01-01
The effect of photo-doping on the quantum paraelectric SrTiO3 is studied by using the one-dimensional quantum Ising model, where the Ising spin describes the effective lattice polarization of an optical phonon. Two types of electron-phonon couplings are introduced through the modulation of transfer integral via lattice deformations. After the exact diagonalization and the perturbation studies, we find that photo-induced low-density carriers can drastically alter quantum fluctuations when the system locates near the quantum critical point between the quantum para- and ferro-electric phases.
Non-Michaelis-Menten kinetics model for conductance of low-conductance potassium ion channels.
Tolokh, Igor S; Tolokh, Illya I; Cho, Hee Cheol; D'Avanzo, Nazzareno; Backx, Peter H; Goldman, Saul; Gray, C G
2005-02-01
A reduced kinetics model is proposed for ion permeation in low-conductance potassium ion channels with zero net electrical charge in the selectivity filter region. The selectivity filter is assumed to be the only conductance-determining part of the channel. Ion entry and exit rate constants depend on the occupancy of the filter due to ion-ion interactions. The corresponding rates are assumed slow relative to the rates of ion motion between binding sites inside the filter, allowing a reduction of the kinetics model of the filter by averaging the entry and exit rate constants over the states with a particular occupancy number. The reduced kinetics model for low-conductance channels is described by only three states and two sets of effective rate constants characterizing transitions between these states. An explicit expression for the channel conductance as a function of symmetrical external ion concentration is derived under the assumption that the average electrical mobility of ions in the selectivity filter region in a limited range of ion concentrations does not depend on these concentrations. The simplified conductance model is shown to provide a good description of the experimentally observed conductance-concentration curve for the low-conductance potassium channel Kir2.1, and also predicts the mean occupancy of the selectivity filter of this channel. We find that at physiological external ion concentrations this occupancy is much lower than the value of two ions observed for one of the high-conductance potassium channels, KcsA.
Institute of Scientific and Technical Information of China (English)
WAN Meixiang
1989-01-01
Method of VSC (Voltage Shorted Compaction ) can be used to determine the intrinsic temperature dependence of conductivity of polycrystalline compaction .The experimental conditions and technical key for preparation of VSC device and its physical model as well as its applications in conducting polymers are discussed in detail.
Dynamical principles of two-component genetic oscillators.
Directory of Open Access Journals (Sweden)
Raúl Guantes
2006-03-01
Full Text Available Genetic oscillators based on the interaction of a small set of molecular components have been shown to be involved in the regulation of the cell cycle, the circadian rhythms, or the response of several signaling pathways. Uncovering the functional properties of such oscillators then becomes important for the understanding of these cellular processes and for the characterization of fundamental properties of more complex clocks. Here, we show how the dynamics of a minimal two-component oscillator is drastically affected by its genetic implementation. We consider a repressor and activator element combined in a simple logical motif. While activation is always exerted at the transcriptional level, repression is alternatively operating at the transcriptional (Design I or post-translational (Design II level. These designs display differences on basic oscillatory features and on their behavior with respect to molecular noise or entrainment by periodic signals. In particular, Design I induces oscillations with large activator amplitudes and arbitrarily small frequencies, and acts as an "integrator" of external stimuli, while Design II shows emergence of oscillations with finite, and less variable, frequencies and smaller amplitudes, and detects better frequency-encoded signals ("resonator". Similar types of stimulus response are observed in neurons, and thus this work enables us to connect very different biological contexts. These dynamical principles are relevant for the characterization of the physiological roles of simple oscillator motifs, the understanding of core machineries of complex clocks, and the bio-engineering of synthetic oscillatory circuits.
Hamiltonian of a homogeneous two-component plasma.
Essén, Hanno; Nordmark, A
2004-03-01
The Hamiltonian of one- and two-component plasmas is calculated in the negligible radiation Darwin approximation. Since the Hamiltonian is the phase space energy of the system its form indicates, according to statistical mechanics, the nature of the thermal equilibrium that plasmas strive to attain. The main issue is the length scale of the magnetic interaction energy. In the past a screening length lambda=1/square root of r(e)n], with n number density and r(e) classical electron radius, has been derived. We address the question whether the corresponding longer screening range obtained from the classical proton radius is physically relevant and the answer is affirmative. Starting from the Darwin Lagrangian it is nontrivial to find the Darwin Hamiltonian of a macroscopic system. For a homogeneous system we resolve the difficulty by temporarily approximating the particle number density by a smooth constant density. This leads to Yukawa-type screened vector potential. The nontrivial problem of finding the corresponding, divergence free, Coulomb gauge version is solved.
Kim, Jeong-Rae; Cho, Kwang-Hyun
2006-12-01
E. coli has two-component systems composed of histidine kinase proteins and response regulator proteins. For a given extracellular stimulus, a histidine kinase senses the stimulus, autophosphorylates and then passes the phosphates to the cognate response regulators. The histidine kinase in an orthodox two-component system has only one histidine domain where the autophosphorylation occurs, but a histidine kinase in some unusual two-component systems (unorthodox two-component systems) has two histidine domains and one aspartate domain. So, the unorthodox two-component systems have more complex phosphorelay mechanisms than orthodox two-component systems. In general, the two-component systems are required to promptly respond to external stimuli for survival of E. coli. In this respect, the complex multi-step phosphorelay mechanism seems to be disadvantageous, but there are several unorthodox two-component systems in E. coli. In this paper, we investigate the reason why such unorthodox two-component systems are present in E. coli. For this purpose, we have developed simplified mathematical models of both orthodox and unorthodox two-component systems and analyzed their dynamical characteristics through extensive computer simulations. We have finally revealed that the unorthodox two-component systems realize ultrasensitive responses to external stimuli and also more robust responses to noises than the orthodox two-component systems.
Histidine Phosphotransfer Proteins in Fungal Two-Component Signal Transduction Pathways
2013-01-01
The histidine phosphotransfer (HPt) protein Ypd1 is an important participant in the Saccharomyces cerevisiae multistep two-component signal transduction pathway and, unlike the expanded histidine kinase gene family, is encoded by a single gene in nearly all model and pathogenic fungi. Ypd1 is essential for viability in both S. cerevisiae and in Cryptococcus neoformans. These and other aspects of Ypd1 biology, combined with the availability of structural and mutational data in S. cerevisiae, s...
A Possible Two-Component Structure of the Non-Perturbative Pomeron
Gauron, P; Gauron, Pierre; Nicolescu, Basarab
2000-01-01
We propose a QCD-inspired two-component Pomeron form which gives an excellent description of the proton-proton, pi-proton, kaon-proton, gamma-proton and gamma-gamma total cross sections. Our fit has a better CHI2/dof for a smaller number of parameters as compared with the PDG fit. Our 2-Pomeron form is fully compatible with weak Regge exchange-degeneracy, universality, Regge factorization and the generalized vector dominance model.
Configurational Model for Conductivity of Stabilized Fluorite Structure Oxides
DEFF Research Database (Denmark)
Poulsen, Finn Willy
1981-01-01
The formalism developed here furnishes means by which ionic configurations, solid solution limits, and conductivity mechanisms in doped fluorite structures can be described. The present model differs markedly from previous models but reproduces qualitatively reality. The analysis reported...
Trapping of two-component matter-wave solitons by mismatched optical lattices
Energy Technology Data Exchange (ETDEWEB)
Shi, Z.; Law, K.J.H. [Department of Mathematics and Statistics, University of Massachusetts, Amherst, MA 01003-4515 (United States); Kevrekidis, P.G. [Department of Mathematics and Statistics, University of Massachusetts, Amherst, MA 01003-4515 (United States)], E-mail: kevrekid@gmail.com; Malomed, B.A. [Department of Physical Electronics, School of Electrical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv 69978 (Israel)
2008-05-26
We consider a one-dimensional model of a two-component Bose-Einstein condensate in the presence of periodic external potentials of opposite signs, acting on the two species. The interaction between the species is attractive, while intra-species interactions may be attractive too [the system of the bright-bright (BB) type], or of opposite signs in the two components [the gap-bright (GB) type]. We identify the existence and stability domains for soliton complexes of the BB and GB types. The evolution of unstable solitons leads to the establishment of oscillatory states. The increase of the strength of the nonlinear attraction between the species results in symbiotic stabilization of the complexes, despite the fact that one component is centered around a local maximum of the respective periodic potential.
Casino, Patricia; Rubio, Vicente; Marina, Alberto
2009-10-16
The chief mechanism used by bacteria for sensing their environment is based on two conserved proteins: a sensor histidine kinase (HK) and an effector response regulator (RR). The signal transduction process involves highly conserved domains of both proteins that mediate autokinase, phosphotransfer, and phosphatase activities whose output is a finely tuned RR phosphorylation level. Here, we report the structure of the complex between the entire cytoplasmic portion of Thermotoga maritima class I HK853 and its cognate, RR468, as well as the structure of the isolated RR468, both free and BeF(3)(-) bound. Our results provide insight into partner specificity in two-component systems, recognition of the phosphorylation state of each partner, and the catalytic mechanism of the phosphatase reaction. Biochemical analysis shows that the HK853-catalyzed autokinase reaction proceeds by a cis autophosphorylation mechanism within the HK subunit. The results suggest a model for the signal transduction mechanism in two-component systems.
A hydrodynamic scheme for two-component winds from hot stars
Votruba, V; Kubát, J; Rätzel, D
2007-01-01
We have developed a time-dependent two-component hydrodynamics code to simulate radiatively-driven stellar winds from hot stars. We use a time-explicit van Leer scheme to solve the hydrodynamic equations of a two-component stellar wind. Dynamical friction due to Coulomb collisions between the passive bulk plasma and the line-scattering ions is treated by a time-implicit, semi-analytic method using a polynomial fit to the Chandrasekhar function. This gives stable results despite the stiffness of the problem. This method was applied to model stars with winds that are both poorly and well-coupled. While for the former case we reproduce the mCAK solution, for the latter case our solution leads to wind decoupling.
Model for electrical conductivity of muscle meat during Ohmic heating
Sman, van der R.G.M.
2017-01-01
A model is presented for predicting the electrical conductivity of muscle meat, which can be used for the evaluation of Ohmic heating. The model computes the conductivity as a function of composition, temperature and microstructure. The muscle meat is thought to be composed of protein, water, salt.
The CpxRA two-component system is essential for Citrobacter rodentium virulence.
Thomassin, Jenny-Lee; Giannakopoulou, Natalia; Zhu, Lei; Gross, Jeremy; Salmon, Kristiana; Leclerc, Jean-Mathieu; Daigle, France; Le Moual, Hervé; Gruenheid, Samantha
2015-05-01
Citrobacter rodentium is a murine intestinal pathogen used as a model for the foodborne human pathogens enterohemorrhagic Escherichia coli and enteropathogenic E. coli. During infection, these pathogens use two-component signal transduction systems to detect and adapt to changing environmental conditions. In E. coli, the CpxRA two-component signal transduction system responds to envelope stress by modulating the expression of a myriad of genes. Quantitative real-time PCR showed that cpxRA was expressed in the colon of C57BL/6J mice infected with C. rodentium. To determine whether CpxRA plays a role during C. rodentium infection, a cpxRA deletion strain was generated and found to have a colonization defect during infection. This defect was independent of an altered growth rate or a defective type III secretion system, and single-copy chromosomal complementation of cpxRA restored virulence. The C. rodentium strains were then tested in C3H/HeJ mice, a lethal intestinal infection model. Mice infected with the ΔcpxRA strain survived infection, whereas mice infected with the wild-type or complemented strains succumbed to infection. Furthermore, we found that the cpxRA expression level was higher during early infection than at a later time point. Taken together, these data demonstrate that the CpxRA two-component signal transduction system is essential for the in vivo virulence of C. rodentium. In addition, these data suggest that fine-tuned cpxRA expression is important for infection. This is the first study that identifies a C. rodentium two-component transduction system required for pathogenesis. This study further indicates that CpxRA is an interesting target for therapeutics against enteric pathogens.
Soil hydraulic properties near saturation, an improved conductivity model
DEFF Research Database (Denmark)
Børgesen, Christen Duus; Jacobsen, Ole Hørbye; Hansen, Søren;
2006-01-01
The hydraulic properties near saturation can change dramatically due to the presence of macropores that are usually difficult to handle in traditional pore size models. The purpose of this study is to establish a data set on hydraulic conductivity near saturation, test the predictive capability...... of commonly used hydraulic conductivity models and give suggestions for improved models. Water retention and near saturated and saturated hydraulic conductivity were measured for a variety of 81 top and subsoils. The hydraulic conductivity models by van Genuchten [van Genuchten, 1980. A closed-form equation...... for predicting the hydraulic conductivity of unsaturated soils. Soil Sci. Soc. Am. J. 44, 892–898.] (vGM) and Brooks and Corey, modified by Jarvis [Jarvis, 1991. MACRO—A Model of Water Movement and Solute Transport in Macroporous Soils. Swedish University of Agricultural Sciences. Department of Soil Sciences...
Numerical Modelling of Electric Conductance of a thin Sheet
Directory of Open Access Journals (Sweden)
Mojmir Kollar
2006-01-01
Full Text Available In this paper the numeric modelling of total resistance of a thin sheet, with local conductivity in randomlydistributed grains higher then is that of the basic matrix, is presented. The 2D model is formed by a structure of longitudinaland transversal conductors interconnected in nodes of a square net. In all nodes, using iteration procedure, the potential isdetermined from which the conductance of sheet is computed between two touching electrodes. The described model can beused to imitate the behaviour of heterogeneous thin conducting sheets prepared by different techniques. The model wasverified in some cases where the net resistance is well known from the theory.
Bioinformatics analysis of two-component regulatory systems in Staphylococcus epidermidis
Institute of Scientific and Technical Information of China (English)
QIN Zhiqiang; ZHONG Yang; ZHANG Jian; HE Youyu; WU Yang; JIANG Juan; CHEN Jiemin; LUO Xiaomin; QU Di
2004-01-01
Sixteen pairs of two-component regulatory systems are identified in the genome of Staphylococcus epidermidis ATCC12228 strain, which is newly sequenced by our laboratory for Medical Molecular Virology and Chinese National Human Genome Center at Shanghai, by using bioinformatics analysis. Comparative analysis of the twocomponent regulatory systems in S. epidermidis and that of S.aureus and Bacillus subtilis shows that these systems may regulate some important biological functions, e.g. growth,biofilm formation, and expression of virulence factors in S.epidermidis. Two conserved domains, i.e. HATPase_c and REC domains, are found in all 16 pairs of two-component proteins.Homologous modelling analysis indicates that there are 4similar HATPase_c domain structures of histidine kinases and 13 similar REC domain structures of response regulators,and there is one AMP-PNP binding pocket in the HATPase_c domain and three active aspartate residues in the REC domain. Preliminary experiment reveals that the bioinformatics analysis of the conserved domain structures in the two-component regulatory systems in S. epidermidis may provide useful information for discovery of potential drug target.
Model for thermal conductivity of CNT-nanofluids
Indian Academy of Sciences (India)
H E Patel; K B Anoop; T Sundararajan; Sarit K Das
2008-06-01
This work presents a simple model for predicting the thermal conductivity of carbon nanotube (CNT) nanofluids. Effects due to the high thermal conductivity of CNTs and the percolation of heat through it are considered to be the most important reasons for their anomalously high thermal conductivity enhancement. A new approach is taken for the modeling, the novelty of which lies in the prediction of the thermal behaviour of oil based as well as water based CNT nanofluids, which are quite different from each other in thermal characteristics. The model is found to correctly predict the trends observed in experimental data for different combinations of CNT nanofluids with varying concentrations.
Predicting Two Components of Career Maturity in School Based Adolescents.
Creed, Peter A.; Patton, Wendy A.
2003-01-01
Multiple regression analyses of data on career maturity, work commitment, work values, self-efficacy, age, and career decidedness were conducted for 367 Australian students in grades 8-12. Chief predictors of career maturity attitudes were age, gender, and career certainty. Commitment and career indecision were the main predictors of career…
Precise methods for conducted EMI modeling,analysis,and prediction
Institute of Scientific and Technical Information of China (English)
2008-01-01
Focusing on the state-of-the-art conducted EMI prediction, this paper presents a noise source lumped circuit modeling and identification method, an EMI modeling method based on multiple slope approximation of switching transitions, and dou-ble Fourier integral method modeling PWM conversion units to achieve an accurate modeling of EMI noise source. Meanwhile, a new sensitivity analysis method, a general coupling model for steel ground loops, and a partial element equivalent circuit method are proposed to identify and characterize conducted EMI coupling paths. The EMI noise and propagation modeling provide an accurate prediction of conducted EMI in the entire frequency range (0―10 MHz) with good practicability and generality. Finally a new measurement approach is presented to identify the surface current of large dimensional metal shell. The proposed analytical modeling methodology is verified by experimental results.
Precise methods for conducted EMI modeling,analysis, and prediction
Institute of Scientific and Technical Information of China (English)
MA WeiMing; ZHAO ZhiHua; MENG Jin; PAN QiJun; ZHANG Lei
2008-01-01
Focusing on the state-of-the-art conducted EMI prediction, this paper presents a noise source lumped circuit modeling and identification method, an EMI modeling method based on multiple slope approximation of switching transitions, and dou-ble Fourier integral method modeling PWM conversion units to achieve an accurate modeling of EMI noise source. Meanwhile, a new sensitivity analysis method, a general coupling model for steel ground loops, and a partial element equivalent circuit method are proposed to identify and characterize conducted EMI coupling paths. The EMI noise and propagation modeling provide an accurate prediction of conducted EMI in the entire frequency range (0-10 MHz) with good practicability and generality. Finally a new measurement approach is presented to identify the surface current of large dimensional metal shell. The proposed analytical modeling methodology is verified by experimental results.
Height-integrated conductivity in auroral substorms - 2. Modeling
DEFF Research Database (Denmark)
Gjerløv, Jesper Wittendorff; Hoffman, R.A.
2000-01-01
Calculations of height-integrated conductivity from 31 individual Dynamics Explorer (DE 2) substorm crossings presented by Gjerloev and Hoffman [this issue] are used to compile empirical models of the height-integrated Pedersen and Hall conductivities (conductances) in a bulge-type auroral substorm....... Global auroral images obtained by Dynamics Explorer 1 (DE 1) were used to select substorms displaying a typical bulge-type emission pattern and each individual DE 2 pass was positioned with respect to key features in the observed emission pattern. The conductances were calculated for each DE 2 pass using...... electron precipitation data and a monoenergetic conductance model. All passes were divided into six different sectors, and average conductance profiles were carefully deduced for each of these sectors. Using a simple boxcar filter, smoothed average sector passes were calculated and from linear...
Predictions of Phase Distribution in Liquid-Liquid Two-Component Flow
Wang, Xia; Sun, Xiaodong; Duval, Walter M.
2011-06-01
Ground-based liquid-liquid two-component flow can be used to study reduced-gravity gas-liquid two-phase flows provided that the two liquids are immiscible with similar densities. In this paper, we present a numerical study of phase distribution in liquid-liquid two-component flows using the Eulerian two-fluid model in FLUENT, together with a one-group interfacial area transport equation (IATE) that takes into account fluid particle interactions, such as coalescence and disintegration. This modeling approach is expected to dynamically capture changes in the interfacial structure. We apply the FLUENT-IATE model to a water-Therminol 59® two-component vertical flow in a 25-mm inner diameter pipe, where the two liquids are immiscible with similar densities (3% difference at 20°C). This study covers bubbly (drop) flow and bubbly-to-slug flow transition regimes with area-averaged void (drop) fractions from 3 to 30%. Comparisons of the numerical results with the experimental data indicate that for bubbly flows, the predictions of the lateral phase distributions using the FLUENT-IATE model are generally more accurate than those using the model without the IATE. In addition, we demonstrate that the coalescence of fluid particles is dominated by wake entrainment and enhanced by increasing either the continuous or dispersed phase velocity. However, the predictions show disagreement with experimental data in some flow conditions for larger void fraction conditions, which fall into the bubbly-to-slug flow transition regime. We conjecture that additional fluid particle interaction mechanisms due to the change of flow regimes are possibly involved.
Graphene Nanoribbon Conductance Model in Parabolic Band Structure
Directory of Open Access Journals (Sweden)
Mohammad Taghi Ahmadi
2010-01-01
Full Text Available Many experimental measurements have been done on GNR conductance. In this paper, analytical model of GNR conductance is presented. Moreover, comparison with published data which illustrates good agreement between them is studied. Conductance of GNR as a one-dimensional device channel with parabolic band structures near the charge neutrality point is improved. Based on quantum confinement effect, the conductance of GNR in parabolic part of the band structure, also the temperature-dependent conductance which displays minimum conductance near the charge neutrality point are calculated. Graphene nanoribbon (GNR with parabolic band structure near the minimum band energy terminates Fermi-Dirac integral base method on band structure study. While band structure is parabola, semiconducting GNRs conductance is a function of Fermi-Dirac integral which is based on Maxwell approximation in nondegenerate limit especially for a long channel.
Multiscale modeling of thermal conductivity of polycrystalline graphene sheets.
Mortazavi, Bohayra; Pötschke, Markus; Cuniberti, Gianaurelio
2014-03-21
We developed a multiscale approach to explore the effective thermal conductivity of polycrystalline graphene sheets. By performing equilibrium molecular dynamics (EMD) simulations, the grain size effect on the thermal conductivity of ultra-fine grained polycrystalline graphene sheets is investigated. Our results reveal that the ultra-fine grained graphene structures have thermal conductivity one order of magnitude smaller than that of pristine graphene. Based on the information provided by the EMD simulations, we constructed finite element models of polycrystalline graphene sheets to probe the thermal conductivity of samples with larger grain sizes. Using the developed multiscale approach, we also investigated the effects of grain size distribution and thermal conductivity of grains on the effective thermal conductivity of polycrystalline graphene. The proposed multiscale approach on the basis of molecular dynamics and finite element methods could be used to evaluate the effective thermal conductivity of polycrystalline graphene and other 2D structures.
Investigating Student Understanding of Quantum Mechanics Spontaneous Models of Conductivity
Wittmann, M C; Redish, E F; Wittmann, Michael C.; Steinberg, Richard N.; Redish, Edward F.
2002-01-01
Students are taught several models of conductivity, both at the introductory and the advanced level. From early macroscopic models of current flow in circuits, through the discussion of microscopic particle descriptions of electrons flowing in an atomic lattice, to the development of microscopic non-localized band diagram descriptions in advanced physics courses, they need to be able to distinguish between commonly used, though sometimes contradictory, physical models. In investigations of student reasoning about models of conduction, we find that students often are unable to account for the existence of free electrons in a conductor and create models that lead to incorrect predictions and responses contradictory to expert descriptions of the physics. We have used these findings as a guide to creating curriculum materials that we show can be effective helping students to apply the different conduction models more effectively.
A D-region conductivity model from EISCAT VHF measurements
Directory of Open Access Journals (Sweden)
K. Schlegel
Full Text Available An easy-to-use model to evaluate conductivities at high and middle latitudes in the height range 70–100 km is presented. It is based on electron density profiles obtained with the EISCAT VHF radar during 11 years and on the neutral atmospheric model MSIS95. The model uses solar zenith angle, geomagnetic activity and season as input parameters. It was mainly constructed to study the properties of Schumann resonances that depend on such conductivity profiles.
Key words. Meteorology and atmospheric dynamics (middle atmospheric dynamics – Ionosphere (modeling and forecasting; ionosphere-atmosphere interaction
Thermal conductivity modeling of water containing metal oxide nanoparticles
Institute of Scientific and Technical Information of China (English)
Ahmad Azari
2015-01-01
The nano particles have demonstrated great potential to improve the heat transfer characteristics of heat transfer fluids. Possible parameters responsible for this increase were studied. The heat transfer profile in the nanolayer region was combined with other parameters such as volume fraction, particle radius thermal conductivity of the fluid, particle and nanolayer, to formulate a thermal conductivity model. Results predicting the thermal conductivity of nanofluids using the model were compared with experimental results as well as studies by other researchers. The comparison of the results obtained for the CuO/water and TiO2/water nanofluids studied shows that the correlation proposed is in closest proximity in predicting the experimental results for the thermal conductivity of a nanofluid. Also, a parametric study was performed to understand how a number of factors affect the thermal conductivity of nanofluids using the developed correlation.
Modeling of the RF system for the normal conducting linac
Institute of Scientific and Technical Information of China (English)
GENG Zhe-Qiao; HOU Mi; PEI Guo-Xi
2008-01-01
To study the new RF control methods, a mathematic model of the RF system for the normal conducting linac is built and implemented with the software of Matlab. The model contains some typical units of the RF system, such as the klystron, the SLED and the traveling wave accelerating tube. Finally, the model is used to study the working point of the SLED and the adaptive feed forward algorithm for the RF control system. Simulation shows that the model works well as expected.
Fractional Heat Conduction Models and Thermal Diffusivity Determination
Directory of Open Access Journals (Sweden)
Monika Žecová
2015-01-01
Full Text Available The contribution deals with the fractional heat conduction models and their use for determining thermal diffusivity. A brief historical overview of the authors who have dealt with the heat conduction equation is described in the introduction of the paper. The one-dimensional heat conduction models with using integer- and fractional-order derivatives are listed. Analytical and numerical methods of solution of the heat conduction models with using integer- and fractional-order derivatives are described. Individual methods have been implemented in MATLAB and the examples of simulations are listed. The proposal and experimental verification of the methods for determining thermal diffusivity using half-order derivative of temperature by time are listed at the conclusion of the paper.
Topological phases of two-component bosons in species-dependent artificial gauge potentials
Wu, Ying-Hai; Shi, Tao
2016-08-01
We study bosonic atoms with two internal states in artificial gauge potentials whose strengths are different for the two components. A series of topological phases for such systems is proposed using the composite fermion theory and the parton construction. It is found in exact diagonalization that some of the proposed states may be realized for simple contact interaction between bosons. The ground states and low-energy excitations of these states are modeled using trial wave functions. The effective field theories for these states are also constructed and reveal some interesting properties.
Modelling of diffusion and conductivity relaxation of oxide ceramics
Preis, Wolfgang
2016-12-01
A two-dimensional square grain model has been applied to simulate simultaneously the diffusion process and relaxation of the dc conduction of polycrystalline oxide materials due to a sudden change of the oxygen partial pressure of the surrounding gas phase. The numerical calculations are performed by employing the finite element approach. The grains are squares of equal side length (average grain size) and the grain boundaries may consist of thin slabs of uniform thickness. An additional (space charge) layer adjacent to the grain boundary cores (thin slabs) either blocking (depletion layer) or highly conductive for electronic charge carriers may surround the grains. The electronic transport number of the mixed ionic-electronic conducting oxide ceramics may be close to unity (predominant electronic conduction). If the chemical diffusion coefficient of the neutral mobile component (oxygen) of the grain boundary core regions is assumed to be higher by many orders of magnitude than that in the bulk, the simulated relaxation curves for mass transport (diffusion) and dc conduction can deviate remarkably from each other. Deviations between the relaxation of mass transport and dc conduction are found in the case of considerably different electronic conductivities of grain boundary core regions, space charge layers, and bulk. On the contrary, the relaxation curves of mass transport and electronic conductivity are in perfect coincidence, when either effective medium diffusion occurs or the effective conductivity is unaffected by the individual conductivities of core regions and possible space charge layers, i.e. the grain boundary resistivity is negligible.
PHASE TRANSITION PROPERTIES OF A TWO COMPONENT FINITE MAGNETIC SUPERLATTICE
Institute of Scientific and Technical Information of China (English)
WANG XIAO-GUANG; LIU NING-NING; PAN SHAO-HUA; YANG GUO-ZHEN
2000-01-01
We study an (l, n) finite superlattice, which consists of two alternative magnetic materials(components) of l and n atomic layers, respectively. Based on the Ising model, we examine the phase transition properties of the magnetic superlattice. By transfer matrix method we derive the equation for Curie temperature of the superlattice. Numerical results are obtained for the dependence of Curie temperature on the thickness and exchange constants of the superlattice.
The optimization model of the heat conduction structure
Institute of Scientific and Technical Information of China (English)
Yongcun Zhang; Shutian Liu
2008-01-01
An optimization model considering a novel thermal performance index to be the objective function is proposed for minimizing the highest temperature in this paper. Firstly, the performance of the conventional heat conduction optimization model, with the dissipation of heat transport potential capacity as the objective function, is evaluated by a one-dimensional heat conduction problem in a planar plate exchanger. Then, a new thermal performance index, named the geometric average temperature, is introduced. The new heat conduction optimization model, with the geometric average temperature as the objective function, is developed and the corresponding finite element formula is presented. The results show that the geometric average temperature is an ideal thermal performance index and the solution of the new model is close to the theoretical optimal solution.
Absolutely stable solitons in two-component active systems
Malomed, B A; Malomed, Boris; Winful, Herbert
1995-01-01
As is known, a solitary pulse in the complex cubic Ginzburg-Landau (GL) equation is unstable. We demonstrate that a system of two linearly coupled GL equations with gain and dissipation in one subsystem and pure dissipation in another produces absolutely stable solitons and their bound states. The problem is solved in a fully analytical form by means of the perturbation theory. The soliton coexists with a stable trivial state; there is also an unstable soliton with a smaller amplitude, which is a separatrix between the two stable states. This model has a direct application in nonlinear fiber optics, describing an Erbium-doped laser based on a dual-core fiber.
Heat transfer in two-component internal mist cooling
Energy Technology Data Exchange (ETDEWEB)
Novak, V.; Sadowski, D.L.; Schoonover, K.G.; Abdel-Khalik, S.I. [G.W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, 801 Ferst Drive, Atlanta, GA 30332-0405 (United States); Ghiaasiaan, S.M. [G.W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, 801 Ferst Drive, Atlanta, GA 30332-0405 (United States)], E-mail: mghiaasiaan@gatech.edu
2008-09-15
An experimental investigation was conducted to examine steady, internal, nozzle-generated, gas/liquid mist cooling in vertical channels. The ideal primary cooling mechanism in this situation is surface evaporation of an ultra-thin, subcooled liquid film that forms on the heated surface. The aim was to quantify the effects of various operating and design parameters on the cooling effectiveness. Parameters tested included the liquid atomization nozzle design, inlet flow condition (liquid mass fraction; carrier gas velocity, temperature and humidity; liquid temperature; liquid droplet size distribution; and gas/liquid combination), channel characteristics (cross-section geometry, length and surface wettability), and flow direction. Interest in this research has been motivated by the need for a highly efficient cooling mechanism in high-power lasers for inertial fusion reactor applications. A fully instrumented experimental test facility that included three cylindrical and two rectangular electrically heated test sections with different cross-sections and unheated entry lengths was used. The channel hydraulic diameters covered the range 16-26.7 mm, and the heated length-to-hydraulic-diameter ratio varied in the range from 23.3 to 51. Water was used as the mist liquid, with air or helium as the carrier gas. Three types of mist generating nozzles with significantly different spray characteristics were used. Local heat transfer coefficients, defined based on the temperature difference between the heated surface and the bulk gas, were obtained along the channels for a wide range of operating conditions. The data indicate that mist cooling can increase the heat transfer coefficient by more than an order of magnitude compared to forced convection using only the carrier gas.
Mathematical modeling of mechanical vibration assisted conductivity imaging
Ammari, Habib; Kwon, Hyeuknam; Seo, Jin Keun; Woo, Eung Je
2014-01-01
This paper aims at mathematically modeling a new multi-physics conductivity imaging system incorporating mechanical vibrations simultaneously applied to an imaging object together with current injections. We perturb the internal conductivity distribution by applying time-harmonic mechanical vibrations on the boundary. This enhances the effects of any conductivity discontinuity on the induced internal current density distribution. Unlike other conductivity contrast enhancing frameworks, it does not require a prior knowledge of a reference data. In this paper, we provide a mathematical framework for this novel imaging modality. As an application of the vibration-assisted impedance imaging framework, we propose a new breast image reconstruction method in electrical impedance tomography (EIT). As its another application, we investigate a conductivity anomaly detection problem and provide an efficient location search algorithm. We show both analytically and numerically that the applied mechanical vibration increas...
Modeling Interfacial Thermal Boundary Conductance of Engineered Interfaces
2014-08-31
involving carbon materials. Determined scaling laws for conductivity of carbon nanotube networks [11]. Modified the DMM to predict hBD at metal–graphite...111, 084310 (2012). 11A. N. Volkov and L. V. Zhigilei, “Scaling laws and mesoscopic modeling of thermal conductivity in carbon nanotube materials...instead from an algebraic expression that accurately reproduces the MD results but with negligible computational expense. This permitted a large
Percolative model of proton conductivity of Nafion {sup registered} membranes
Energy Technology Data Exchange (ETDEWEB)
Costamagna, Paola; Grosso, Simone; Di Felice, Renzo [DICheP, Department of Chemical and Process Engineering ' G.B. Bonino' , University of Genoa, Via Opera Pia 15, 16145 Genoa (Italy)
2008-04-01
A model is proposed for the simulation of Nafion {sup registered} proton conductivity, where it is assumed that proton conduction occurs only in the water present in the membrane pores. Water is considered to be present in the pores due to two different phenomena: adsorption and capillary condensation. In the latter case, the pore is flooded and proton conduction occurs throughout the whole pore section. The conditions under which capillary condensation occurs are simulated in the model through the Kelvin-Cohan equation for condensation. The Kelvin-Cohan equation is a function of RH, temperature and the pore radius; the larger the pore, the higher the RH for which capillary condensation takes place. If the conditions for capillary condensation are not satisfied, then water is present in the pore due to adsorption under the form of a water layer which covers the pore walls and provides a path for proton conduction. In this case, the modified Brunauer-Emmet-Teller (BET) equation has been used in the model to simulate the thickness of the water layer. In both cases of capillary condensation and adsorption, the conductance g of a pore has then been calculated through the formula g = {kappa}S/l, where {kappa} is the proton conductivity of water, S the cross-section of the pore volume which is occupied by water, and l is the pore length. Pores of different size are present in the membrane (data of pore size distribution have been extracted from the literature); connectivity of the water layers present in the different pores is necessary in order to achieve a continuous path of proton conduction through the membrane, which is a percolation problem. To this end, the structure of the membrane pores has been simulated in the model through the effective medium approximation (EMA). The simulation results of proton conductivity of the membrane show good agreement with literature experimental data, even when varying the RH operating conditions. (author)
Random resistor network model of minimal conductivity in graphene.
Cheianov, Vadim V; Fal'ko, Vladimir I; Altshuler, Boris L; Aleiner, Igor L
2007-10-26
Transport in undoped graphene is related to percolating current patterns in the networks of n- and p-type regions reflecting the strong bipolar charge density fluctuations. Finite transparency of the p-n junctions is vital in establishing the macroscopic conductivity. We propose a random resistor network model to analyze scaling dependencies of the conductance on the doping and disorder, the quantum magnetoresistance and the corresponding dephasing rate.
Instabilities in relativistic two-component (super)fluids
Haber, Alexander; Stetina, Stephan
2016-01-01
We study two-fluid systems with nonzero fluid velocities and compute their sound modes, which indicate various instabilities. For the case of two zero-temperature superfluids we employ a microscopic field-theoretical model of two coupled bosonic fields, including an entrainment coupling and a non-entrainment coupling. We analyse the onset of the various instabilities systematically and point out that the dynamical two-stream instability can only occur beyond Landau's critical velocity, i.e., in an already energetically unstable regime. A qualitative difference is found for the case of two normal fluids, where certain transverse modes suffer a two-stream instability in an energetically stable regime if there is entrainment between the fluids. Since we work in a fully relativistic setup, our results are very general and of potential relevance for (super)fluids in neutron stars and, in the non-relativistic limit of our results, in the laboratory.
Schwinger effect and negative differential conductivity in holographic models
Directory of Open Access Journals (Sweden)
Shankhadeep Chakrabortty
2015-01-01
Full Text Available The consequences of the Schwinger effect for conductivity are computed for strong coupling systems using holography. The one-loop diagram on the flavor brane introduces an O(λNc imaginary part in the effective action for a Maxwell flavor gauge field. This in turn introduces a real conductivity in an otherwise insulating phase of the boundary theory. Moreover, in certain regions of parameter space the differential conductivity is negative. This is computed in the context of the Sakai–Sugimoto model.
Physical mechanisms of nonlinear conductivity: A model analysis
Heuer, Andreas; Lühning, Lars
2014-03-01
Nonlinear effects are omnipresent in thin films of ion conducting materials showing up as a significant increase of the conductivity. For a disordered hopping model general physical mechanisms are identified giving rise to the occurrence of positive or negative nonlinear effects, respectively. Analytical results are obtained in the limit of high but finite dimensions. They are compared with the numerical results for 3D up to 6D systems. A very good agreement can be found, in particular for higher dimensions. The results can also be used to rationalize previous numerical simulations. The implications for the interpretation of nonlinear conductivity experiments on inorganic ion conductors are discussed.
Two-component jet simulations: I. Topological stability of analytical MHD outflow solutions
Matsakos, T; Vlahakis, N; Massaglia, S; Mignone, A; Trussoni, E
2007-01-01
Observations of collimated outflows in young stellar objects indicate that several features of the jets can be understood by adopting the picture of a two-component outflow, wherein a central stellar component around the jet axis is surrounded by an extended disk-wind. The precise contribution of each component may depend on the intrinsic physical properties of the YSO-disk system as well as its evolutionary stage. In this context, the present article starts a systematic investigation of two-component jet models via time-dependent simulations of two prototypical and complementary analytical solutions, each closely related to the properties of stellar-outflows and disk-winds. These models describe a meridionally and a radially self-similar exact solution of the steady-state, ideal hydromagnetic equations, respectively. By using the PLUTO code to carry out the simulations, the study focuses on the topological stability of each of the two analytical solutions, which are successfully extended to all space by remo...
Numerical analysis of a non equilibrium two-component two-compressible flow in porous media
Saad, Bilal Mohammed
2013-09-01
We propose and analyze a finite volume scheme to simulate a non equilibrium two components (water and hydrogen) two phase flow (liquid and gas) model. In this model, the assumption of local mass non equilibrium is ensured and thus the velocity of the mass exchange between dissolved hydrogen and hydrogen in the gas phase is supposed finite. The proposed finite volume scheme is fully implicit in time together with a phase-by-phase upwind approach in space and it is discretize the equations in their general form with gravity and capillary terms We show that the proposed scheme satisfies the maximum principle for the saturation and the concentration of the dissolved hydrogen. We establish stability results on the velocity of each phase and on the discrete gradient of the concentration. We show the convergence of a subsequence to a weak solution of the continuous equations as the size of the discretization tends to zero. At our knowledge, this is the first convergence result of finite volume scheme in the case of two component two phase compressible flow in several space dimensions.
Implications of Two-component Dark Matter Induced by Forbidden Channels and Thermal Freeze-out
Aoki, Mayumi
2016-01-01
We consider a model of two-component dark matter based on a hidden $U(1)_D$ symmetry, in which relic densities of the dark matter are determined by forbidden channels and thermal freeze-out. The hidden $U(1)_D$ symmetry is spontaneously broken to a residual $\\mathbb{Z}_4$ symmetry, and the lightest $\\mathbb{Z}_4$ charged particle can be a dark matter candidate. Moreover, depending on the mass hierarchy in the dark sector, we have two-component dark matter. We show that the relic density of the lighter dark matter component can be determined by forbidden annihilation channels which require larger couplings compared to the normal freeze-out mechanism. As a result, a large self-interaction of the lighter dark matter component can be induced, which may solve small scale problems of $\\Lambda$CDM model. On the other hand, the heavier dark matter component is produced by normal freeze-out mechanism. We find that interesting implications emerge between the two dark matter components in this framework. We explore dete...
Mitrophanov, Alexander Y; Hadley, Tricia J; Groisman, Eduardo A
2010-08-27
Positive feedback loops are regulatory elements that can modulate expression output, kinetics and noise in genetic circuits. Transcriptional regulators participating in such loops are often expressed from two promoters, one constitutive and one autoregulated. Here, we investigate the interplay of promoter strengths and the intensity of the stimulus activating the transcriptional regulator in defining the output of a positively autoregulated genetic circuit. Using a mathematical model of two-component regulatory systems, which are present in all domains of life, we establish that positive feedback strongly affects the steady-state output levels at both low and high levels of stimulus if the constitutive promoter of the regulator is weak. By contrast, the effect of positive feedback is negligible when the constitutive promoter is sufficiently strong, unless the stimulus intensity is very high. Furthermore, we determine that positive feedback can affect both transient and steady state output levels even in the simplest genetic regulatory systems. We tested our modeling predictions by abolishing the positive feedback loop in the two-component regulatory system PhoP/PhoQ of Salmonella enterica, which resulted in diminished induction of PhoP-activated genes. Copyright (c) 2010 Elsevier Ltd. All rights reserved.
Simple Predictive Models for Saturated Hydraulic Conductivity of Technosands
DEFF Research Database (Denmark)
Arthur, Emmanuel; Razzaghi, Fatemeh; Møldrup, Per
2012-01-01
Accurate estimation of saturated hydraulic conductivity (Ks) of technosands (gravel-free, coarse sands with negligible organic matter content) is important for irrigation and drainage management of athletic fields and golf courses. In this study, we developed two simple models for predicting Ks......-connectivity parameter (m) obtained for pure coarse sand after fitting to measured Ks data was 1.68 for both models and in good agreement with m values obtained from recent solute and gas diffusion studies. Both the modified K-C and R-C models are easy to use and require limited parameter input, and both models gave...
K. Wei (Katy); M. Moinat (Maxim); T.R. Maarleveld (Timo); F.J. Bruggeman (Frank)
2014-01-01
htmlabstractSignal transduction by prokaryotes almost exclusively relies on two-component systems for sensing and responding to (extracellular) signals. Here, we use stochastic models of two-component systems to better understand the impact of stochasticity on the fidelity and robustness of signal
Podar, Mircea
2007-01-01
Two-component signal transduction represents the main mechanism by which bacterial cells interact with their environment. The functional diversity of two-component systems and their relative importance in the different taxonomic groups and ecotypes of bacteria has become evident with the availability of several hundred genomic sequences. The vast majority of bacteria, including many high rank taxonomic units, while being components of complex microbial communities remain uncultured (i.e., have not been isolated or grown in the laboratory). Environmental genomic data from such communities are becoming available, and in addition to its profound impact on microbial ecology it will propel molecular biological disciplines beyond the traditional model organisms. This chapter describes the general approaches used in generating environmental genomic data and how that data can be used to advance the study of two component-systems and signal transduction in general.
A Model for Conducting and Assessing Interdisciplinary Undergraduate Dissertations
Engström, Henrik
2015-01-01
This paper presents an effort to create a unified model for conducting and assessing undergraduate dissertations, shared by all disciplines involved in computer game development at a Swedish university. Computer game development includes technology-oriented disciplines as well as disciplines with aesthetical traditions. The challenge has been to…
Local electric conductive property of Si nanowire models
Directory of Open Access Journals (Sweden)
Yuji Ikeda
2012-12-01
Full Text Available Local electric conductive properties of Si nanowire models are investigated by using two local electric conductivity tensors, σ↔ ext (r⃗ and σ↔ int (r⃗, defined in Rigged QED. It is emphasized that σ↔ int (r⃗ is defined as the response of electric current to the actual electric field at a specific point and does not have corresponding macroscopic physical quantity. For the Si nanowire models, there are regions which show complicated response of electric current density to electric field, in particular, opposite and rotational ones. Local conductivities are considered to be available for the study of a negative differential resistance (NDR, which may be related to this opposite response. It is found that σ↔ int (r⃗ shows quite different pattern from σ↔ ext (r⃗, local electric conductivity defined for the external electric field. The effects of impurities are also studied by using the model including a Ge atom, in terms of the local response to electric field. It is found that the difference from the pristine model is found mainly around the Ge atom.
Modelling and measurement of high switching frequency conducted EMI
CSIR Research Space (South Africa)
Grobler, Inus
2013-11-01
Full Text Available to perform the analyses of the model, presented as a very easy and reliable tool. The common mode effect of electrically non-conductive polymer heatsinks was presented and tested as a remedy to reduce the increased common mode noise levels due to higher...
Physical-Statistical Model of Thermal Conductivity of Nanofluids
Directory of Open Access Journals (Sweden)
B. Usowicz
2014-01-01
Full Text Available A physical-statistical model for predicting the effective thermal conductivity of nanofluids is proposed. The volumetric unit of nanofluids in the model consists of solid, liquid, and gas particles and is treated as a system made up of regular geometric figures, spheres, filling the volumetric unit by layers. The model assumes that connections between layers of the spheres and between neighbouring spheres in the layer are represented by serial and parallel connections of thermal resistors, respectively. This model is expressed in terms of thermal resistance of nanoparticles and fluids and the multinomial distribution of particles in the nanofluids. The results for predicted and measured effective thermal conductivity of several nanofluids (Al2O3/ethylene glycol-based and Al2O3/water-based; CuO/ethylene glycol-based and CuO/water-based; and TiO2/ethylene glycol-based are presented. The physical-statistical model shows a reasonably good agreement with the experimental results and gives more accurate predictions for the effective thermal conductivity of nanofluids compared to existing classical models.
Thermal scale modeling of radiation-conduction-convection systems.
Shannon, R. L.
1972-01-01
Investigation of thermal scale modeling applied to radiation-conduction-convection systems with particular emphasis on the spacecraft cabin atmosphere/cabin wall thermal interface. The 'modified material preservation,' 'temperature preservation,' 'scaling compromises,' and 'Nusselt number preservation' scale modeling techniques and their inherent limitations and problem areas are described. The compromised scaling techniques of mass flux preservation and heat transfer coefficient preservation show promise of giving adequate thermal similitude while preserving both gas and temperature in the scale model. The use of these compromised scaling techniques was experimentally demonstrated in tests of full scale and 1/4 scale models. Correlation of test results for free and forced convection under various test conditions shows the effectiveness of these scaling techniques. It is concluded that either mass flux or heat transfer coefficient preservation may result in adequate thermal similitude depending on the system to be modeled. Heat transfer coefficient preservation should give good thermal similitude for manned spacecraft scale modeling applications.
The regular conducting fluid model for relativistic thermodynamics
Carter, Brandon
2012-01-01
The "regular" model presented here can be considered to be the most natural solution to the problem of constructing the simplest possible relativistic analogue of the category of classical Fourier--Euler thermally conducting fluid models as characterised by a pair of equations of state for just two dependent variables (an equilibrium density and a conducting scalar). The historically established but causally unsatisfactory solution to this problem due to Eckart is shown to be based on an ansatz that is interpretable as postulating a most unnatural relation between the (particle and entropy) velocities and their associated momenta, which accounts for the well known bad behaviour of that model which has recently been shown to have very pathological mixed-elliptic-hyperbolic comportments. The newer (and more elegant) solution of Landau and Lifshitz has a more mathematically respectable parabolic-hyperbolic comportment, but is still compatible with a well posed initial value problem only in such a restricted limi...
Functional mathematical model of dual pathway AV nodal conduction.
Climent, A M; Guillem, M S; Zhang, Y; Millet, J; Mazgalev, T N
2011-04-01
Dual atrioventricular (AV) nodal pathway physiology is described as two different wave fronts that propagate from the atria to the His bundle: one with a longer effective refractory period [fast pathway (FP)] and a second with a shorter effective refractory period [slow pathway (SP)]. By using His electrogram alternance, we have developed a mathematical model of AV conduction that incorporates dual AV nodal pathway physiology. Experiments were performed on five rabbit atrial-AV nodal preparations to develop and test the presented model. His electrogram alternances from the inferior margin of the His bundle were used to identify fast and slow wave front propagations. The ability to predict AV conduction time and the interaction between FP and SP wave fronts have been analyzed during regular and irregular atrial rhythms (e.g., atrial fibrillation). In addition, the role of dual AV nodal pathway wave fronts in the generation of Wenckebach periodicities has been illustrated. Finally, AV node ablative modifications have been evaluated. The model accurately reproduced interactions between FP and SP during regular and irregular atrial pacing protocols. In all experiments, specificity and sensitivity higher than 85% were obtained in the prediction of the pathway responsible for conduction. It has been shown that, during atrial fibrillation, the SP ablation significantly increased the mean HH interval (204 ± 39 vs. 274 ± 50 ms, P AV node mechanisms and should be considered as a step forward in the studies of AV nodal conduction.
A thermal conductivity model for U-Si compounds
Energy Technology Data Exchange (ETDEWEB)
Zhang, Yongfeng [Idaho National Lab. (INL), Idaho Falls, ID (United States); Andersson, Anders David Ragnar [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
2017-02-02
U_{3}Si_{2} is a candidate for accident tolerant nuclear fuel being developed as an alternative to UO_{2} in commercial light water reactors (LWRs). One of its main benefits compared to UO_{2} is higher thermal conductivity that increases with temperature. This increase is contrary to UO_{2}, for which the thermal conductivity decreases with temperature. The reason for the difference is the electronic origin of thermal conductivity in U_{3}Si_{2}, as compared to the phonon mechanism responsible for thermal transport in UO_{2}. The phonon thermal conductivity in UO_{2} is unusually low for a fluorite oxide due to the strong interaction with the spins in the paramagnetic phase. The thermal conductivity of U_{3}Si_{2} as well as other U-Si compounds has been measured experimentally [1-4]. However, for fuel performance simulations it is also critical to model the degradation of the thermal conductivity due to damage and microstructure evolution caused by the reactor environment (irradiation and high temperature). For UO_{2} this reduction is substantial and it has been the topic of extensive NEAMS research resulting in several publications [5, 6]. There are no data or models for the evolution of the U_{3}Si_{2} thermal conductivity under irradiation. We know that the intrinsic thermal conductivities of UO_{2} (semi-conductor) and U_{3}Si_{2} (metal) are very different, and we do not necessarily expect the dependence on damage to be the same either, which could present another advantage for the silicide fuel. In this report we summarize the first step in developing a model for the thermal conductivity of U-Si compounds with the goal of capturing the effect of damage in U_{3}Si_{2}. Next year, we will focus on lattice damage. We will also attempt to assess the impact of fission gas bubbles.
A micro-convection model for thermal conductivity of nanofluids
Indian Academy of Sciences (India)
Hrishikesh E Patel; T Sundararajan; T Pradeep; A Dasgupta; N Dasgupta; Sarit K Das
2005-11-01
Increase in the specific surface area as well as Brownian motion are supposed to be the most significant reasons for the anomalous enhancement in thermal conductivity of nanofluids. This work presents a semi-empirical approach for the same by emphasizing the above two effects through micro-convection. A new way of modeling thermal conductivity of nanofluids has been explored which is found to agree excellently with a wide range of experimental data obtained by the present authors as well as the data published in literature.
Atomistic Modeling of Thermal Conductivity of Epoxy Nanotube Composites
Fasanella, Nicholas A.; Sundararaghavan, Veera
2016-05-01
The Green-Kubo method was used to investigate the thermal conductivity as a function of temperature for epoxy/single wall carbon nanotube (SWNT) nanocomposites. An epoxy network of DGEBA-DDS was built using the `dendrimer' growth approach, and conductivity was computed by taking into account long-range Coulombic forces via a k-space approach. Thermal conductivity was calculated in the direction perpendicular to, and along the SWNT axis for functionalized and pristine SWNT/epoxy nanocomposites. Inefficient phonon transport at the ends of nanotubes is an important factor in the thermal conductivity of the nanocomposites, and for this reason discontinuous nanotubes were modeled in addition to long nanotubes. The thermal conductivity of the long, pristine SWNT/epoxy system is equivalent to that of an isolated SWNT along its axis, but there was a 27% reduction perpendicular to the nanotube axis. The functionalized, long SWNT/epoxy system had a very large increase in thermal conductivity along the nanotube axis (~700%), as well as the directions perpendicular to the nanotube (64%). The discontinuous nanotubes displayed an increased thermal conductivity along the SWNT axis compared to neat epoxy (103-115% for the pristine SWNT/epoxy, and 91-103% for functionalized SWNT/epoxy system). The functionalized system also showed a 42% improvement perpendicular to the nanotube, while the pristine SWNT/epoxy system had no improvement over epoxy. The thermal conductivity tensor is averaged over all possible orientations to see the effects of randomly orientated nanotubes, and allow for experimental comparison. Excellent agreement is seen for the discontinuous, pristine SWNT/epoxy nanocomposite. These simulations demonstrate there exists a threshold of the SWNT length where the best improvement for a composite system with randomly oriented nanotubes would transition from pristine SWNTs to functionalized SWNTs.
Initial data problems for the two-component Camassa-Holm system
Directory of Open Access Journals (Sweden)
Xiaohuan Wang
2014-06-01
Full Text Available This article concerns the study of some properties of the two-component Camassa-Holm system. By constructing two sequences of solutions of the two-component Camassa-Holm system, we prove that the solution map of the Cauchy problem of the two-component Camassa-Holm system is not uniformly continuous in $H^s(\\mathbb{R}$, $s>5/2$.
Bi-Spectrum Scattering Model for Conducting Randomly Rough Surface
Institute of Scientific and Technical Information of China (English)
刘宁; 李宗谦
2002-01-01
A scattering model is developed to predict the scattering coefficient of a conducting randomly rough surface by analyzing the randomly rough surface in the spectral domain using the bi-spectrum method. For common randomly rough surfaces without obvious two-scale characteristics, a scale-compression filter can divide the auto-correlation spectrum into two parts with different correlation lengths. The Kirchhoff approximation and the small perturbation method are used to obtain the surface field, then a bistatic scattering model, the bi-spectrum model (BSM), is used to derive an explicit expression from the surface field. Examples using the integral equation model (IEM), finite difference of the time domain (FDTD) method, and BSM show that the BSM accuracy is acceptable and its range of validity is similar to IEM. BSM can also be extended to a scattering model for dielectric randomly rough surfaces.
Analytical method for yrast line states in the interacting two-component Bose-Einstein condensate
Institute of Scientific and Technical Information of China (English)
解炳昊; 景辉
2002-01-01
The yrast spectrum for the harmonically trapped two-component Bose-Einstein condensate (BEC), omitting thedifference between the two components, has been studied using an analytical method. The energy eigenstates andeigenvalues for L＝0,1,2,3 are given. We illustrate that there are different eigenstate behaviours between the even Land odd L cases for the two-component BEC in two dimensions. Except for symmetric states, there are antisymmetricstates for the permutation of the two components, which cannot reduce to those in a single condensate case when thevalue of L is odd.
A micromechanical model for effective conductivity in granular electrode structures
Ott, Julia; Völker, Benjamin; Gan, Yixiang; McMeeking, Robert M.; Kamlah, Marc
2013-10-01
Optimization of composition and microstructure is important to enhance performance of solid oxide fuel cells (SOFC) and lithium-ion batteries (LIB). For this, the porous electrode structures of both SOFC and LIB are modeled as a binary mixture of electronic and ionic conducting particles to estimate effective transport properties. Particle packings of 10 000 spherical, binary sized and randomly positioned particles are created numerically and densified considering the different manufacturing processes in SOFC and LIB: the sintering of SOFC electrodes is approximated geometrically, whereas the calendering process and volume change due to intercalation in LIB are modeled physically by a discrete element approach. A combination of a tracking algorithm and a resistor network approach is developed to predict the connectivity and effective conductivity for the various densified structures. For SOFC, a systematic study of the influence of morphology on connectivity and conductivity is performed on a large number of assemblies with different compositions and particle size ratios between 1 and 10. In comparison to percolation theory, an enlarged percolation area is found, especially for large size ratios. It is shown that in contrast to former studies the percolation threshold correlates to varying coordination numbers. The effective conductivity shows not only an increase with volume fraction as expected but also with size ratio. For LIB, a general increase of conductivity during the intercalation process was observed in correlation with increasing contact forces. The positive influence of calendering on the percolation threshold and the effective conductivity of carbon black is shown. The anisotropy caused by the calendering process does not influence the carbon black phase.
Molecular Models for Conductance in Junctions and Electrochemical Electron Transfer
Mazinani, Shobeir Khezr Seddigh
This thesis develops molecular models for electron transport in molecular junctions and intra-molecular electron transfer. The goal is to identify molecular descriptors that afford a substantial simplification of these electronic processes. First, the connection between static molecular polarizability and the molecular conductance is examined. A correlation emerges whereby the measured conductance of a tunneling junction decreases as a function of the calculated molecular polarizability for several systems, a result consistent with the idea of a molecule as a polarizable dielectric. A model based on a macroscopic extension of the Clausius-Mossotti equation to the molecular domain and Simmon's tunneling model is developed to explain this correlation. Despite the simplicity of the theory, it paves the way for further experimental, conceptual and theoretical developments in the use of molecular descriptors to describe both conductance and electron transfer. Second, the conductance of several biologically relevant, weakly bonded, hydrogen-bonded systems is systematically investigated. While there is no correlation between hydrogen bond strength and conductance, the results indicate a relation between the conductance and atomic polarizability of the hydrogen bond acceptor atom. The relevance of these results to electron transfer in biological systems is discussed. Hydrogen production and oxidation using catalysts inspired by hydrogenases provides a more sustainable alternative to the use of precious metals. To understand electrochemical and spectroscopic properties of a collection of Fe and Ni mimics of hydrogenases, high-level density functional theory calculations are described. The results, based on a detailed analysis of the energies, charges and molecular orbitals of these metal complexes, indicate the importance of geometric constraints imposed by the ligand on molecular properties such as acidity and electrocatalytic activity. Based on model calculations of
Modeling of thermal conductivity of stainless-steelmaking dust pellets
Institute of Scientific and Technical Information of China (English)
彭兵; 彭及; 余笛
2004-01-01
The thermal conductivity of stainless-steelmaking dust pellets, an important parameter for the direct recycling of the dust, is naturally of interest to metallurgists. The measurement of central temperature and surface temperature was taken in a furnace. The physical model and calculation model for the heating process were set up to check the thermal conductivity of the dust pellets. The physical structure parameters δ and λ of the basic unit are 0.92 and 0.45 based on the calculation. The temperature in the pellet can be expressed in a linear equation a5 Tp =a1 TN +a2 TM +a4. This is convenient to determine the central temperature of a pellet in the direct recycling process.
Dynamic form factor of two-component plasmas beyond the static local field approximation
Daligault, J
2003-01-01
The spectrum of ion density fluctuations in a strongly coupled plasma is described both within the static G(k, 0) and high-frequency G(k, infinity) local field approximation. By a direct comparison with molecular dynamics data, we find that for large coupling, G(k, 0) is inadequate. Based on this result, we employ the Zwanzig-Mori memory function approach to model the Thomson scattering cross section, i.e. the electron dynamic form factor S sub e sub e (k, omega) of a dense two-component plasma. We show the sensitivity of S sub e sub e (k, omega) to three approximations for G(k, omega).
Cross-talk and specificity in two-component signal transduction pathways.
Agrawal, Ruchi; Sahoo, Bikash Kumar; Saini, Deepak Kumar
2016-05-01
Two-component signaling systems (TCSs) are composed of two proteins, sensor kinases and response regulators, which can cross-talk and integrate information between them by virtue of high-sequence conservation and modular nature, to generate concerted and diversified responses. However, TCSs have been shown to be insulated, to facilitate linear signal transmission and response generation. Here, we discuss various mechanisms that confer specificity or cross-talk among TCSs. The presented models are supported with evidence that indicate the physiological significance of the observed TCS signaling architecture. Overall, we propose that the signaling topology of any TCSs cannot be predicted using obvious sequence or structural rules, as TCS signaling is regulated by multiple factors, including spatial and temporal distribution of the participating proteins.
Chatterjee, Arka; Ghosh, Himadri
2016-01-01
Two component advective flow (TCAF) successfully explains spectral and timing properties of black hole candidates. We study the nature of photon trajectories in the vicinity of a Schwarzschild black hole and incorporate this in predicting images of TCAF with a black hole at the Centre. We also compute the emitted spectra. We employ a Monte-Carlo simulation technique to achieve our goal. For accurate prediction of the image and the spectra, null trajectories are generated without constraining the motion to any specific plane. Red shift, bolometric flux and corresponding temperature have been calculated with appropriate relativistic consideration. The centrifugal barrier dominated boundary layer or CENBOL near the inner region of the disk which acts as the Compton cloud is appropriately modelled as a thick accretion disk in Schwarzschild geometry for the purpose of imaging and computing spectra. The variations of spectra and image with physical parameters such as the accretion rate ($\\dot{m}_d$) and inclination...
A Simple Model for Oxygen Conduction in Some Perovskite Compounds
Totsuji, Chieko
1996-01-01
A simple model for oxygen ion conduction in perovskite compounds is proposed. The potential for an oxygen ion is calculated as the sum of the long range Coulomb potential and short range repulsive potential in a cubic lattice. The activation energy is estimated as the difference in the values of potential at the barrier and at the stable site. When appropriate conditions are satisfied, the activation energy has a minimum as a function of lattice constant in accordance with recent experiments.
Measurement and modeling of unsaturated hydraulic conductivity: Chapter 21
Perkins, Kim S.; Elango, Lakshmanan
2011-01-01
The unsaturated zone plays an extremely important hydrologic role that influences water quality and quantity, ecosystem function and health, the connection between atmospheric and terrestrial processes, nutrient cycling, soil development, and natural hazards such as flooding and landslides. Unsaturated hydraulic conductivity is one of the main properties considered to govern flow; however it is very difficult to measure accurately. Knowledge of the highly nonlinear relationship between unsaturated hydraulic conductivity (K) and volumetric water content () is required for widely-used models of water flow and solute transport processes in the unsaturated zone. Measurement of unsaturated hydraulic conductivity of sediments is costly and time consuming, therefore use of models that estimate this property from more easily measured bulk-physical properties is common. In hydrologic studies, calculations based on property-transfer models informed by hydraulic property databases are often used in lieu of measured data from the site of interest. Reliance on database-informed predicted values with the use of neural networks has become increasingly common. Hydraulic properties predicted using databases may be adequate in some applications, but not others.
Excitation model of pacemaker cardiomyocytes of cardiac conduction system
Grigoriev, M.; Babich, L.
2015-11-01
Myocardium includes typical and atypical cardiomyocytes - pacemakers, which form the cardiac conduction system. Excitation from the atrioventricular node in normal conditions is possible only in one direction. Retrograde direction of pulses is impossible. The most important prerequisite for the work of cardiomyocytes is the anatomical integrity of the conduction system. Changes in contractile force of the cardiomyocytes, which appear periodically, are due to two mechanisms of self-regulation - heterometric and homeometric. Graphic course of the excitation pulse propagation along the heart muscle more accurately reveals the understanding of the arrhythmia mechanism. These models have the ability to visualize the essence of excitation dynamics. However, they do not have the proper forecasting function for result estimation. Integrative mathematical model enables further investigation of general laws of the myocardium active behavior, allows for determination of the violation mechanism of electrical and contractile function of cardiomyocytes. Currently, there is no full understanding of the topography of pacemakers and ionic mechanisms. There is a need for the development of direction of mathematical modeling and comparative studies of the electrophysiological arrangement of cells of atrioventricular connection and ventricular conduction system.
Effective Thermal Conductivity Modeling of Sandstones: SVM Framework Analysis
Rostami, Alireza; Masoudi, Mohammad; Ghaderi-Ardakani, Alireza; Arabloo, Milad; Amani, Mahmood
2016-06-01
Among the most significant physical characteristics of porous media, the effective thermal conductivity (ETC) is used for estimating the thermal enhanced oil recovery process efficiency, hydrocarbon reservoir thermal design, and numerical simulation. This paper reports the implementation of an innovative least square support vector machine (LS-SVM) algorithm for the development of enhanced model capable of predicting the ETCs of dry sandstones. By means of several statistical parameters, the validity of the presented model was evaluated. The prediction of the developed model for determining the ETCs of dry sandstones was in excellent agreement with the reported data with a coefficient of determination value ({R}2) of 0.983 and an average absolute relative deviation of 0.35 %. Results from present research show that the proposed LS-SVM model is robust, reliable, and efficient in calculating the ETCs of sandstones.
Rock thermal conductivity as key parameter for geothermal numerical models
Di Sipio, Eloisa; Chiesa, Sergio; Destro, Elisa; Galgaro, Antonio; Giaretta, Aurelio; Gola, Gianluca; Manzella, Adele
2013-04-01
The geothermal energy applications are undergoing a rapid development. However, there are still several challenges in the successful exploitation of geothermal energy resources. In particular, a special effort is required to characterize the thermal properties of the ground along with the implementation of efficient thermal energy transfer technologies. This paper focuses on understanding the quantitative contribution that geosciences can receive from the characterization of rock thermal conductivity. The thermal conductivity of materials is one of the main input parameters in geothermal modeling since it directly controls the steady state temperature field. An evaluation of this thermal property is required in several fields, such as Thermo-Hydro-Mechanical multiphysics analysis of frozen soils, designing ground source heat pumps plant, modeling the deep geothermal reservoirs structure, assessing the geothermal potential of subsoil. Aim of this study is to provide original rock thermal conductivity values useful for the evaluation of both low and high enthalpy resources at regional or local scale. To overcome the existing lack of thermal conductivity data of sedimentary, igneous and metamorphic rocks, a series of laboratory measurements has been performed on several samples, collected in outcrop, representative of the main lithologies of the regions included in the VIGOR Project (southern Italy). Thermal properties tests were carried out both in dry and wet conditions, using a C-Therm TCi device, operating following the Modified Transient Plane Source method.Measurements were made at standard laboratory conditions on samples both water saturated and dehydrated with a fan-forced drying oven at 70 ° C for 24 hr, for preserving the mineral assemblage and preventing the change of effective porosity. Subsequently, the samples have been stored in an air-conditioned room while bulk density, solid volume and porosity were detected. The measured thermal conductivity
A feasibility study of using two-component polyurethane adhesive in constructing wooden structures
Institute of Scientific and Technical Information of China (English)
Mohammad Derikvand; Ghanbar Ebrahimi; Mehdi Tajvidi
2014-01-01
This investigation was conducted to determine the feasibility of using a two-component polyurethane (PUR) adhesive, with special waterproof properties, in constructing wooden structures. We designed and conducted tests to compare the shear strength and adhesion per-formance of PUR with polyvinyl acetate (PVAc) adhesive on block-shear specimens constructed of oriental beech (Fagus orientalis L.), fir (Abies alba Mill.), poplar (Populus deltoides Bartr.), white oak (Quercus alba L.), sycamore (Platanus orientalis L.) and white walnut (Juglans cinerea L.). The values of the percentage of wood failure were also determined in specimens constructed with each adhesive. The highest shear strength values of both adhesives were obtained in specimens constructed of beech, while the lowest shear strength values were obtained in fir and poplar specimens. Average shear strength of the PUR adhesive was 16.5%higher than that of the PVAc adhesive. Specimens constructed of fir, poplar and sycamore were characterised by the highest percentages of wood failure, whereas the lowest average percentages of wood failure were obtained in beech and oak specimens. With the exception of oak specimens, there was no statistically significant difference between per-centage of wood failure among the PUR and PVAc adhesives. Generally, the PUR adhesive showed an acceptable adhesion performance on wood materials used in our study.
Two-Component Super AKNS Equations and Their Finite-Dimensional Integrable Super Hamiltonian System
Jing Yu; Jingwei Han
2014-01-01
Starting from a matrix Lie superalgebra, two-component super AKNS system is constructed. By making use of monononlinearization technique of Lax pairs, we find that the obtained two-component super AKNS system is a finite-dimensional integrable super Hamiltonian system. And its Lax representation and $r$ -matrix are also given in this paper.
Relativistic two-component jet evolutions in 2D and 3D
Meliani, Z.; Keppens, R.
2009-01-01
Observations of astrophysical jets and theoretical arguments suggest a transverse stratification with two components induced by intrinsic features of the central engine (accretion disk + black hole). We study two-component jet dynamics for an inner fast low density jet, surrounded by a slower, dense
Two-Component Super AKNS Equations and Their Finite-Dimensional Integrable Super Hamiltonian System
Directory of Open Access Journals (Sweden)
Jing Yu
2014-01-01
Full Text Available Starting from a matrix Lie superalgebra, two-component super AKNS system is constructed. By making use of monononlinearization technique of Lax pairs, we find that the obtained two-component super AKNS system is a finite-dimensional integrable super Hamiltonian system. And its Lax representation and r-matrix are also given in this paper.
Numerical Model for Conduction-Cooled Current Lead Heat Loads
White, M J; Brueck, H D; 10.1063/1.4706965
2012-01-01
Current leads are utilized to deliver electrical power from a room temperature junction mounted on the vacuum vessel to a superconducting magnet located within the vacuum space of a cryostat. There are many types of current leads used at laboratories throughout the world, however, conduction-cooled current leads are often chosen for their simplicity and reliability. Conduction-cooled leads have the advantage of using common materials, have no superconducting/normal state transition, and have no boil-off vapor to collect. The XFEL (X-Ray Free Electron Laser) magnets are operated at 2 K, which makes vapor-cooled current leads impractical due to the sub-atmospheric bath pressure. This paper presents a numerical model for conduction-cooled current lead heat loads. This model takes into account varying material and fluid thermal properties, varying thicknesses along the length of the lead, heat transfer in the circumferential and longitudinal directions, electrical power dissipation, and the effect of thermal inte...
Current amplification models of sensorineurall and conductive hearing loss
Directory of Open Access Journals (Sweden)
Ostojić Sanja
2012-01-01
Full Text Available The main function of a hearing aid is to improve auditory and language abilities of hearing impaired users. The amplification model has to be adapted according to age, degree and type of hearing loss. The goal of this paper is to analyze the current amplification models of sensorineural and conductive hearing loss which can provide a high quality of speech perception and sounds at any degree of hearing loss. The BAHA is a surgically implantable system for treatment of conductive hearing loss that works through direct bone conduction. BAHA is used to help people with chronic ear infections, congenital external auditory canal atresia and single sided deafness who cannot benefit from conventional hearing aids. The last generation of hearing aid for sensorineural hearing loss is cochlear implant. Bimodal amplification improves binaural hearing. Hearing aids alone do not make listening easier in all situations. The things that can interfere with listening are background noises, distance from a sound and reverberation or echo. The device used most often today is the Frequency Modulated (FM system.
Electromagnetic characterization of the CFRPs anisotropic conductivity: modeling and measurements
Menana, H.; Féliachi, M.
2011-02-01
This work deals with the characterization of the conductivity tensor of a carbon fiber reinforced polymer composite (CFRP) thin plate. We propose a contactless method based on the eddy current non destructive testing technique. The used eddy current sensor consists of a ferrite torus on which a winding is wound. The torus is of a rectangular section and contains a thin air-gap in which the thin CFRP plate is inserted. We developed analytical relations giving the longitudinal and transversal conductivities of the CFRP plate as functions of the impedances variations of the eddy current sensor, corresponding to the orientations of the carbon fibers parallel and transverse to the direction of the torus width which is much greater than its thickness. The analytical relations are developed by inverting interpolation functions of curves giving the variations of the sensor impedances as functions of the longitudinal and transversal conductivities of the CFRP plate. These curves are obtained by a numerical model based on a simplified integro-differential formulation in terms of the electric vector potential in the CFRP plate, coupled to the magnetic circuit equations in the ferrite torus. The modeling results are supported by measurements.
Modified Baryonic Dynamics: two-component cosmological simulations with light sterile neutrinos
Energy Technology Data Exchange (ETDEWEB)
Angus, G.W.; Gentile, G. [Department of Physics and Astrophysics, Vrije Universiteit Brussel, Pleinlaan 2, Brussels, 1050 Belgium (Belgium); Diaferio, A. [Dipartimento di Fisica, Università di Torino, Via P. Giuria 1, Torino, I-10125 Italy (Italy); Famaey, B. [Observatoire astronomique de Strasbourg, CNRS UMR 7550, Université de Strasbourg, 11 rue de l' Université, Strasbourg, F-67000 France (France); Heyden, K.J. van der, E-mail: garry.angus@vub.ac.be, E-mail: diaferio@ph.unito.it, E-mail: benoit.famaey@astro.unistra.fr, E-mail: gianfranco.gentile@ugent.be, E-mail: heyden@ast.uct.ac.za [Astrophysics, Cosmology and Gravity Centre, Dept. of Astronomy, University of Cape Town, Private Bag X3, Rondebosch, 7701 South Africa (South Africa)
2014-10-01
In this article we continue to test cosmological models centred on Modified Newtonian Dynamics (MOND) with light sterile neutrinos, which could in principle be a way to solve the fine-tuning problems of the standard model on galaxy scales while preserving successful predictions on larger scales. Due to previous failures of the simple MOND cosmological model, here we test a speculative model where the modified gravitational field is produced only by the baryons and the sterile neutrinos produce a purely Newtonian field (hence Modified Baryonic Dynamics). We use two-component cosmological simulations to separate the baryonic N-body particles from the sterile neutrino ones. The premise is to attenuate the over-production of massive galaxy cluster halos which were prevalent in the original MOND plus light sterile neutrinos scenario. Theoretical issues with such a formulation notwithstanding, the Modified Baryonic Dynamics model fails to produce the correct amplitude for the galaxy cluster mass function for any reasonable value of the primordial power spectrum normalisation.
Quasiperiodicity route to chaos in cardiac conduction model
Quiroz-Juárez, M. A.; Vázquez-Medina, R.; Ryzhii, E.; Ryzhii, M.; Aragón, J. L.
2017-01-01
It has been suggested that cardiac arrhythmias are instances of chaos. In particular that the ventricular fibrillation is a form of spatio-temporal chaos that arises from normal rhythm through a quasi-periodicity or Ruelle-Takens-Newhouse route to chaos. In this work, we modify the heterogeneous oscillator model of cardiac conduction system proposed in Ref. [Ryzhii E, Ryzhii M. A heterogeneous coupled oscillator model for simulation of ECG signals. Comput Meth Prog Bio 2014;117(1):40-49. doi:10.1016/j.cmpb.2014.04.009.], by including an ectopic pacemaker that stimulates the ventricular muscle to model arrhythmias. With this modification, the transition from normal rhythm to ventricular fibrillation is controlled by a single parameter. We show that this transition follows the so-called torus of quasi-periodic route to chaos, as verified by using numerical tools such as power spectrum and largest Lyapunov exponent.
Matsumoto, Jin; Masada, Youhei; Asano, Eiji; Shibata, Kazunari
2011-06-01
The nonlinear dynamics of the outflow driven by magnetic explosion on the surface of compact object is investigated through special relativistic magnetohydrodynamic simulations. We adopt, as an initial equilibrium state, a spherical stellar object embedded in the hydrostatic plasma which has a density ρ(r) ~ r-α and is threaded by a dipole magnetic field. The injection of magnetic energy at the surface of compact star breaks the dynamical equilibrium and triggers two-component outflow. At the early evolutionary stage, the magnetic pressure increases rapidly in time around the stellar surface, initiating a magnetically driven outflow. Then it excites a strong forward shock, shock driven outflow. The expansion velocity of the magnetically driven outflow is characterized by the Alfvén velocity on the stellar surface, and follows a simple scaling relation υmag ~ υA1/2. When the initial density profile declines steeply with radius, the strong shock is accelerated self-similarly to relativistic velocity ahead of the magnetically driven component. We find that the evolution of the strong forward shock can be described by a self-similar relation Γsh ~ rsh, where Γsh is the Lorentz factor of the plasma measured at the shock surface rsh. It should be stressed that the pure hydrodynamic process is responsible for the acceleration of the shock driven outflow. Our two-component outflow model, which is the natural outcome of the magnetic explosion, would deepen the understanding of the magnetic active phenomena on various magnetized stellar objects.
Multiscale Modeling of Thermal Conductivity of Polymer/Carbon Nanocomposites
Clancy, Thomas C.; Frankland, Sarah-Jane V.; Hinkley, Jeffrey A.; Gates, Thomas S.
2010-01-01
Molecular dynamics simulation was used to estimate the interfacial thermal (Kapitza) resistance between nanoparticles and amorphous and crystalline polymer matrices. Bulk thermal conductivities of the nanocomposites were then estimated using an established effective medium approach. To study functionalization, oligomeric ethylene-vinyl alcohol copolymers were chemically bonded to a single wall carbon nanotube. The results, in a poly(ethylene-vinyl acetate) matrix, are similar to those obtained previously for grafted linear hydrocarbon chains. To study the effect of noncovalent functionalization, two types of polyethylene matrices. -- aligned (extended-chain crystalline) vs. amorphous (random coils) were modeled. Both matrices produced the same interfacial thermal resistance values. Finally, functionalization of edges and faces of plate-like graphite nanoparticles was found to be only modestly effective in reducing the interfacial thermal resistance and improving the composite thermal conductivity
Modeling of Thermal Conductivity of Graphite Nanosheet Composites
Lin, Wei; Zhang, Rongwei; Wong, C. P.
2010-03-01
Recent experiments demonstrated a very high thermal conductivity in graphite nanosheet (GNS)/epoxy nanocomposites; however, theoretical analysis is lacking. In this letter, an effective medium model has been used to analyze the effective thermal conductivity of the GNS/polymer nanocomposites and has shown good validity. Strong influences of the aspect ratio and the orientation of the GNS are evident. As expected, interfacial thermal resistance still plays a role in determining the overall thermal transport in the GNS/polymer nanocomposites. In comparison with the interfacial thermal resistance between carbon nanotubes and polymers, the interfacial thermal resistance between GNS and polymers is about one order of magnitude lower, the reason for which is discussed.
Conductivity models for the North Perth Basin, Western Australia
Hoskin, T. E.; Regenauer-Lieb, K.; Jones, A. G.
2013-12-01
Exploration for geothermal resources in the North Perth basin, Western Australia, led to acquisition of new, high resolution Magnetotelluric (MT) and Audio-Magnetotelluric (AMT) data, the first of its kind in the area. Electromagnetic (EM) techniques are widely used in geothermal exploration and ground water investigations and they are well suited for application in the Perth basin. Two east-west transects investigating the structure of the onshore basin and its eastern margin, the Darling Fault Zone, are compared with existing geological models and geophysical data. Down-hole temperature data and depth-to-basement models were used to define areas of investigation in the basin, but there are limited geophysical data available. 1D, 2D and 3D modeling of electromagnetic data have been used to produce new conductivity models using existing data to constrain modelling. EM data complement existing gravity and seismic data and support published models in the upper 4-6km. However in deeper parts of the basin, MT data provide additional information allowing for revision of depth-to-basement. In addition to this, we clearly identify a conductivity anomaly associated with the Darling Fault Zone and are able to image this anomaly penetrating into the upper mantle. Fault zone conductors have been imaged on other lithosphere faults around the world, with one explanation being fluids in the enhanced permeability of the damage zone. Evidence to explain the fault zone conductor of the Darling Fault is presented and discussed as it could have significant implications in the identification of new areas, prospective for geothermal resources in the basin.
Thermal Conductivity of the Potential Repository Horizon Model Report
Energy Technology Data Exchange (ETDEWEB)
J. Ramsey
2002-08-29
The purpose of this report is to assess the spatial variability and uncertainty of thermal conductivity in the host horizon for the proposed repository at Yucca Mountain. More specifically, the lithostratigraphic units studied are located within the Topopah Spring Tuff (Tpt) and consist of the upper lithophysal zone (Tptpul), the middle nonlithophysal zone (Tptpmn), the lower lithophysal zone (Tptpll), and the lower nonlithophysal zone (Tptpln). The Tptpul is the layer directly above the repository host layers, which consist of the Tptpmn, Tptpll, and the Tptpln. Current design plans indicate that the largest portion of the repository will be excavated in the Tptpll (Board et al. 2002 [157756]). The main distinguishing characteristic among the lithophysal and nonlithophysal units is the percentage of large scale (cm-m) voids within the rock. The Tptpul and Tptpll, as their names suggest, have a higher percentage of lithophysae than the Tptpmn and the Tptpln. Understanding the influence of the lithophysae is of great importance to understanding bulk thermal conductivity and perhaps repository system performance as well. To assess the spatial variability and uncertainty of thermal conductivity, a model is proposed that is functionally dependent on the volume fraction of lithophysae and the thermal conductivity of the matrix portion of the rock. In this model, void space characterized as lithophysae is assumed to be air-saturated under all conditions, while void space characterized as matrix may be either water- or air-saturated. Lithophysae are assumed to be air-saturated under all conditions since the units being studied are all located above the water table in the region of interest, and the relatively strong capillary forces of the matrix will, under most conditions, preferentially retain any moisture present in the rock.
Preclinical models of conduct disorder - principles and pharmacologic perspectives.
Haller, Jozsef
2016-05-26
The translational value of preclinical research was recently enhanced by abnormal aggression models, which focus on deviant behaviors induced by the exposure of rodents to etiological factors of aggression-related psychopathologies. Prompted by similar trials in other psychiatric disorders, here we investigate models of abnormal aggression from the perspective of DSM5 criteria. After proposing principles based on which analogies can be established between psychopathology symptoms and rodent behavioral dysfunctions, we show that rodents submitted to abnormal aggression models fulfill basic criteria of aggression-related psychopathologies; moreover, some models can be considered specific to particular disorders e.g. conduct disorder. We also show that abnormal and species-typical aggressions differ in terms of both brain mechanisms and pharmacological responsiveness, which mimics differences observed in psychiatric disorders. We conclude that evaluating abnormal aggression models from a DSM5 perspective is not only possible but also worthwhile, and such models may contribute to the development of novel treatment strategies not only for aggression as a symptom but also for specific aggression-related disorders or multi-symptom clusters at least. Copyright © 2016 Elsevier Ltd. All rights reserved.
Hybrid fluid/kinetic model for parallel heat conduction
Energy Technology Data Exchange (ETDEWEB)
Callen, J.D.; Hegna, C.C.; Held, E.D. [Univ. of Wisconsin, Madison, WI (United States)
1998-12-31
It is argued that in order to use fluid-like equations to model low frequency ({omega} < {nu}) phenomena such as neoclassical tearing modes in low collisionality ({nu} < {omega}{sub b}) tokamak plasmas, a Chapman-Enskog-like approach is most appropriate for developing an equation for the kinetic distortion (F) of the distribution function whose velocity-space moments lead to the needed fluid moment closure relations. Further, parallel heat conduction in a long collision mean free path regime can be described through a combination of a reduced phase space Chapman-Enskog-like approach for the kinetics and a multiple-time-scale analysis for the fluid and kinetic equations.
Noise Modeling From Conductive Shields Using Kirchhoff Equations.
Sandin, Henrik J; Volegov, Petr L; Espy, Michelle A; Matlashov, Andrei N; Savukov, Igor M; Schultz, Larry J
2010-10-01
Progress in the development of high-sensitivity magnetic-field measurements has stimulated interest in understanding the magnetic noise of conductive materials, especially of magnetic shields based on high-permeability materials and/or high-conductivity materials. For example, SQUIDs and atomic magnetometers have been used in many experiments with mu-metal shields, and additionally SQUID systems frequently have radio frequency shielding based on thin conductive materials. Typical existing approaches to modeling noise only work with simple shield and sensor geometries while common experimental setups today consist of multiple sensor systems with complex shield geometries. With complex sensor arrays used in, for example, MEG and Ultra Low Field MRI studies, knowledge of the noise correlation between sensors is as important as knowledge of the noise itself. This is crucial for incorporating efficient noise cancelation schemes for the system. We developed an approach that allows us to calculate the Johnson noise for arbitrary shaped shields and multiple sensor systems. The approach is efficient enough to be able to run on a single PC system and return results on a minute scale. With a multiple sensor system our approach calculates not only the noise for each sensor but also the noise correlation matrix between sensors. Here we will show how the algorithm can be implemented.
Preparation and frictional investigation of the two-components silanes deposited on alumina surface
Energy Technology Data Exchange (ETDEWEB)
Kośla, K.; Grobelny, J.; Cichomski, M., E-mail: mcichom@uni.lodz.pl
2014-09-30
Highlights: • The two-component silane films on the alumina surface were obtained by a combination of soft lithography and vapor phase deposition method. • The effectiveness of modification procedure was monitored by AFM topography images. • By using gas phase deposition method succeeded in obtaining a good reproduction of pattern. • Silane films with low surface free energy and coefficient of friction values were obtained. • The frictional performance in milli-Newton load range of one- and two-component films was investigated by microtribometry. - Abstract: Functionalization and pattering technique that permits two-component pattern-specific modification of alumina surface with silanes molecules are reported. The method relies on a two-component molecular system that simultaneously decreases coefficient of friction of the alumina surface and provides uniform chemical functionality suitable for further elaboration. Pattern/two-component modification is achieved via gas-phase deposition of the silanes using polydimethylsiloxane stamp. The frictional behaviors of the two-component films of the silane molecules with different chain length covalently absorbed on alumina surfaces, were characterized by the ball-disk (microtribometer) tester. The surfaces of the substrate modified by two-component molecular films were examined by atomic force microscopy (AFM). The measured tribological results showed that the mixing of the fluoroalkylsilane and alkylsilane enhance the lubrication and decrease the friction compared to the one-component thin films.
Conductive polymer foams with carbon nanofillers – Modeling percolation behavior
Directory of Open Access Journals (Sweden)
O. Maxian
2017-05-01
Full Text Available A new numerical model considering nanofiller random distribution in a porous polymeric matrix was developed to predict electrical percolation behavior in systems incorporating 1D-carbon nanotubes (CNTs and/or 2D-graphene nanoplatelets (GNPs. The numerical model applies to porous systems with closed-cell morphology. The percolation threshold was found to decrease with increasing porosity due to filler repositioning as a result of foaming. CNTs were more efficient in forming a percolative network than GNPs. High-aspect ratio (AR and randomly oriented fillers were more prone to form a network. Reduced percolation values were determined for misaligned fillers as they connect better in a network compared to aligned ones. Hybrid CNT-GNP fillers show synergistic effects in forming electrically conductive networks by comparison with single fillers.
Validation of conducting wall models using magnetic measurements
Hanson, J. M.; Bialek, J.; Turco, F.; King, J.; Navratil, G. A.; Strait, E. J.; Turnbull, A.
2016-10-01
The impact of conducting wall eddy currents on perturbed magnetic field measurements is a key issue for understanding the measurement and control of long-wavelength MHD stability in tokamak devices. As plasma response models have growth in sophistication, the need to understand and resolve small changes in these measurements has become more important, motivating increased fidelity in simulations of externally applied fields and the wall eddy current response. In this manuscript, we describe thorough validation studies of the wall models in the mars-f and valen stability codes, using coil-sensor vacuum coupling measurements from the DIII-D tokamak (Luxon et al 2005 Fusion Sci. Technol. 48 807). The valen formulation treats conducting structures with arbitrary three-dimensional geometries, while mars-f uses an axisymmetric wall model and a spectral decomposition of the problem geometry with a fixed toroidal harmonic n. The vacuum coupling measurements have a strong sensitivity to wall eddy currents induced by time-changing coil currents, owing to the close proximities of both the sensors and coils to the wall. Measurements from individual coil and sensor channels are directly compared with valen predictions. It is found that straightforward improvements to the valen model, such as refining the wall mesh and simulating the vertical extent of the DIII-D poloidal field sensors, lead to good agreement with the experimental measurements. In addition, couplings to multi-coil, n = 1 toroidal mode perturbations are calculated from the measurements and compared with predictions from both codes. The toroidal mode comparisons favor the fully three-dimensional simulation approach, likely because this approach naturally treats n > 1 sidebands generated by the coils and wall eddy currents, as well as the n = 1 fundamental.
Steady States and Universal Conductance in a Quenched Luttinger Model
Langmann, Edwin; Lebowitz, Joel L.; Mastropietro, Vieri; Moosavi, Per
2016-05-01
We obtain exact analytical results for the evolution of a 1+1-dimensional Luttinger model prepared in a domain wall initial state, i.e., a state with different densities on its left and right sides. Such an initial state is modeled as the ground state of a translation invariant Luttinger Hamiltonian {H_{λ}} with short range non-local interaction and different chemical potentials to the left and right of the origin. The system evolves for time t > 0 via a Hamiltonian {H_{λ'}} which differs from {H_{λ}} by the strength of the interaction. Asymptotically in time, as {t to &infty}; , after taking the thermodynamic limit, the system approaches a translation invariant steady state. This final steady state carries a current I and has an effective chemical potential difference {μ+ - μ-} between right- (+) and left- (-) moving fermions obtained from the two-point correlation function. Both I and {μ+ - μ-} depend on {λ} and {λ'} . Only for the case {λ = λ' = 0} does {μ+ - μ-} equal the difference in the initial left and right chemical potentials. Nevertheless, the Landauer conductance for the final state, {G = I/(μ+ - μ-)} , has a universal value equal to the conductance quantum {e^2/h} for the spinless case.
Steady States and Universal Conductance in a Quenched Luttinger Model
Langmann, Edwin; Lebowitz, Joel L.; Mastropietro, Vieri; Moosavi, Per
2017-01-01
We obtain exact analytical results for the evolution of a 1+1-dimensional Luttinger model prepared in a domain wall initial state, i.e., a state with different densities on its left and right sides. Such an initial state is modeled as the ground state of a translation invariant Luttinger Hamiltonian {H_{λ}} with short range non-local interaction and different chemical potentials to the left and right of the origin. The system evolves for time t > 0 via a Hamiltonian {H_{λ'}} which differs from {H_{λ}} by the strength of the interaction. Asymptotically in time, as {t to ∞}, after taking the thermodynamic limit, the system approaches a translation invariant steady state. This final steady state carries a current I and has an effective chemical potential difference {μ+ - μ-} between right- (+) and left- (-) moving fermions obtained from the two-point correlation function. Both I and {μ+ - μ-} depend on {λ} and {λ'}. Only for the case {λ = λ' = 0} does {μ+ - μ-} equal the difference in the initial left and right chemical potentials. Nevertheless, the Landauer conductance for the final state, {G = I/(μ+ - μ-)}, has a universal value equal to the conductance quantum {e^2/h} for the spinless case.
Numerical heat conduction in hydrodynamical models of colliding hypersonic flows
Parkin, E R
2010-01-01
Hydrodynamical models of colliding hypersonic flows are presented which explore the dependence of the resulting dynamics and the characteristics of the derived X-ray emission on numerical conduction and viscosity. For the purpose of our investigation we present models of colliding flow with plane-parallel and cylindrical divergence. Numerical conduction causes erroneous heating of gas across the contact discontinuity which has implications for the rate at which the gas cools. We find that the dynamics of the shocked gas and the resulting X-ray emission are strongly dependent on the contrast in the density and temperature either side of the contact discontinuity, these effects being strongest where the postshock gas of one flow behaves quasi-adiabatically while the postshock gas of the other flow is strongly radiative. Introducing additional numerical viscosity into the simulations has the effect of damping the growth of instabilities, which in some cases act to increase the volume of shocked gas and can re-he...
Methods of producing epoxides from alkenes using a two-component catalyst system
Kung, Mayfair C.; Kung, Harold H.; Jiang, Jian
2013-07-09
Methods for the epoxidation of alkenes are provided. The methods include the steps of exposing the alkene to a two-component catalyst system in an aqueous solution in the presence of carbon monoxide and molecular oxygen under conditions in which the alkene is epoxidized. The two-component catalyst system comprises a first catalyst that generates peroxides or peroxy intermediates during oxidation of CO with molecular oxygen and a second catalyst that catalyzes the epoxidation of the alkene using the peroxides or peroxy intermediates. A catalyst system composed of particles of suspended gold and titanium silicalite is one example of a suitable two-component catalyst system.
Two-component generalizations of the periodic Camassa-Holm and Degasperis-Procesi equations
Escher, Joachim; Lenells, Jonatan
2010-01-01
We use geometric methods to study two natural two-component generalizations of the periodic Camassa-Holm and Degasperis-Procesi equations. We show that these generalizations can be regarded as geodesic equations on the semidirect product of the diffeomorphism group of the circle $\\Diff(S^1)$ with some space of sufficiently smooth functions on the circle. Our goals are to understand the geometric properties of these two-component systems and to prove local well-posedness in various function spaces. Furthermore, we perform some explicit curvature calculations for the two-component Camassa-Holm equation, giving explicit examples of large subspaces of positive curvature.
Evolution and phyletic distribution of two-component signal transduction systems.
Wuichet, Kristin; Cantwell, Brian J; Zhulin, Igor B
2010-04-01
Two-component signal transduction systems are abundant in prokaryotes. They enable cells to adjust multiple cellular functions in response to changing environmental conditions. These systems are also found, although in much smaller numbers, in lower eukaryotes and plants, where they appear to control a few very specific functions. Two-component systems have evolved in Bacteria from much simpler one-component systems bringing about the benefit of extracellular versus intracellular sensing. We review reports establishing the origins of two-component systems and documenting their occurrence in major lineages of Life. Copyright 2010 Elsevier Ltd. All rights reserved.
Two-Component Wadati-Konno-Ichikawa Equation and Its Symmetry Reductions
Institute of Scientific and Technical Information of China (English)
QU Chang-Zheng; YAO Ruo-Xia; LI Zhi-Bin
2004-01-01
@@ It is shown that two-component Wadati-Konno-Ichikawa (WKI) equation, i.e. a generalization of the well-known WKI equation, is obtained from the motion of space curves in Euclidean geometry, and it is exactly a system for the graph of the curves when the curve motion is governed by the two-component modified Korteweg-de Vries flow. Group-invariant solutions of the two-component WKI equation which corresponds to an optimal system of its Lie point symmetry groups are obtained, and its similarity reductions to systems of ordinary differential equations are also given.
Thermoset nanocomposites from two-component waterborne polyurethanes and cellulose whiskers.
Wu, Guo-min; Chen, Jian; Huo, Shu-ping; Liu, Gui-feng; Kong, Zhen-wu
2014-05-25
We prepared thermoset nancomposites from biomass-based two-component waterborne polyurethane (2K-WPU) and cellulose namowhiskers (CNWs). Due to the formation of hydrogen bonds, the viscosity of 2K-WPU dispersion was found to be increased with the addition of CNWs. SEM images showed "sea-island structure" corresponding to the microphase separation between CNWs nano-filler and the 2K-WPU matrix. The α-relaxation temperature (Tα) and glass transition temperature (Tg) increased with the increase of CNWs content, which was due to the formation of a rigid CNWs nano-phase acting as crosslinking points in the 2K-WPU matrix. Mechanical properties from tensile test showed Young's modulus and tensile strength of 2K-WPU/CNWs nanocomposites were reinforced by the addition of CNWs. Thermo-stability of 2K-WPU/CNWs nanocomposites decreased slightly with the increase of CNWs content, which could be attributed to the increased thermal conductivity of the material after adding CNWs. Copyright © 2014 Elsevier Ltd. All rights reserved.
AC-conductance of a non-local Thirring model
Energy Technology Data Exchange (ETDEWEB)
Trobo, Marta Liliana; Von Reichenbach, Maria Cecilia [Universidad Nacional de La Plata (UNLP) (Argentina); Barci, Daniel G. [Universidade do Estado do Rio de Janeiro (UERJ), RJ (Brazil)]|[Illinois Univ., Urbana, IL (United States); Medeiros Neto, J.F. de [Universidade Estadual de Santa Cruz (UESC), Ilheus, BA (Brazil)
2000-07-01
Full text follows: In recent years renewed interest has arisen in the study of low dimensional field theories. In particular, research on the one dimensional (1-d) fermionic gas has been very active, mainly due to the actual nano-fabrication of the so called quantum wires and their relevance for low dimensional condensed matter physics as, for instance, the quantum Hall effect and high-T{sub c} superconductivity. Experimental and theoretical investigations of the AC-transport phenomena in nano-structures are of profound scientific interest since they provide insight into the behavior of quantum systems. In this frame, we consider a field theoretical approach that can be used to describe a system of 1-d strongly correlated particles in the low transferred momentum limit. We study a non-local and non-covariant version of the Thirring model where the fermionic densities and currents are coupled through bilocal, distance-dependent potentials which describe the forward scattering processes. We apply the functional bosonization formalism, a very useful technique to understand the non-perturbative regime of strongly correlated one-dimensional fermionic systems, to this non local Thirring like model (NLTM). We are interesting in the transport properties of the system, in particular in the AC-conductance. To this end, we consider a NLTM in the presence of an external electromagnetic field. We obtain the AC-conductance of the model in terms of non-local potentials used to describe the interactions between fermionic currents. We also analyze the transport properties in the case in which weak couplings between fermionic currents and localized impurities are taken into account. (author)
Scale and Contour: Two Components of a Theory of Memory for Melodies.
Dowling, W. Jay
1978-01-01
The author concentrates on two components of memory which contribute to the reproduction and recognition of melodies, namely, melodic contour and musical scale. A new experiment is reported that shows the interdependence of both components. (Author/RK)
Laser controlling chaotic region of a two-component Bose-Einstein condensate
Institute of Scientific and Technical Information of China (English)
Boli Xia; Wenhua Hai
2005-01-01
@@ For a weakly and periodically driven two-component Bose-Einstein condensate (BEC) the Melnikov chaotic solution and boundedness conditions are derived from a direct perturbation theory that leads to the chaotic regions in the parameter space.
Two component injection moulding: an interface quality and bond strength dilemma
DEFF Research Database (Denmark)
Islam, Mohammad Aminul; Hansen, Hans Nørgaard; Tang, Peter Torben
2008-01-01
Two component injection moulding is a special branch of injection moulding where two different polymers are combined in to a single part to exploit the different material properties in the final product. Considering the technical and economical importance of the process, this paper investigates...... on quality parameters of the two component parts. Most engineering applications of two component injection moulding calls for high bond strength between the two polymers, on the other hand a sharp and well-defined interface between the two polymers are required for applications like selective metallization...... conditions for a sharp and well-defined interface are exactly the opposite of what is congenial for higher bond strength. So in the production of two component injection moulded parts, there is a compromise to make between the interface quality and the bond strength of the two polymers. Also the injection...
ZHAO, Haiyan; Tang, Liang
2009-01-01
The multidomain cytoplasmic portion of the histidine protein kinase from an essential two-component signal transduction system has been crystallized and X-ray data have been collected to 2.8 Å resolution.
Totally Asymmetric Limit for Models of Heat Conduction
De Carlo, Leonardo; Gabrielli, Davide
2017-08-01
We consider one dimensional weakly asymmetric boundary driven models of heat conduction. In the cases of a constant diffusion coefficient and of a quadratic mobility we compute the quasi-potential that is a non local functional obtained by the solution of a variational problem. This is done using the dynamic variational approach of the macroscopic fluctuation theory (Bertini et al. in Rev Mod Phys 87:593, 2015). The case of a concave mobility corresponds essentially to the exclusion model that has been discussed in Bertini et al. (J Stat Mech L11001, 2010; Pure Appl Math 64(5):649-696, 2011; Commun Math Phys 289(1):311-334, 2009) and Enaud and Derrida (J Stat Phys 114:537-562, 2004). We consider here the convex case that includes for example the Kipnis-Marchioro-Presutti (KMP) model and its dual (KMPd) (Kipnis et al. in J Stat Phys 27:6574, 1982). This extends to the weakly asymmetric regime the computations in Bertini et al. (J Stat Phys 121(5/6):843-885, 2005). We consider then, both microscopically and macroscopically, the limit of large externalfields. Microscopically we discuss some possible totally asymmetric limits of the KMP model. In one case the totally asymmetric dynamics has a product invariant measure. Another possible limit dynamics has instead a non trivial invariant measure for which we give a duality representation. Macroscopically we show that the quasi-potentials of KMP and KMPd, which are non local for any value of the external field, become local in the limit. Moreover the dependence on one of the external reservoirs disappears. For models having strictly positive quadratic mobilities we obtain instead in the limit a non local functional having a structure similar to the one of the boundary driven asymmetric exclusion process.
Cao, Xinhua; Liu, Xue; Chen, Liming; Mao, Yueyuan; Lan, Haichuang; Yi, Tao
2015-11-15
A two-component gel containing long chain alkylated gallic acid (GA) and photochromic phenazopyridine (PAP) was prepared. The gel was thoroughly characterized by UV-visible and IR spectra, SEM and POM images, XRD diffraction and dynamic oscillatory measurements. The structure and transparency of the two-component gel can be reversibly changed by alternative UV light irradiation and warming in the palm of the hand. This kind of soft material has potential application in upscale surface functional materials.
Competitive Adsorption of a Two-Component Gas on a Deformable Adsorbent
Usenko, A. S.
2013-01-01
We investigate the competitive adsorption of a two-component gas on the surface of an adsorbent whose adsorption properties vary in adsorption due to the adsorbent deformation. The essential difference of adsorption isotherms for a deformable adsorbent both from the classical Langmuir adsorption isotherms of a two-component gas and from the adsorption isotherms of a one-component gas taking into account variations in adsorption properties of the adsorbent in adsorption is obtained. We establi...
Evolution and phyletic distribution of two-component signal transduction systems
Wuichet, Kristin; Cantwell, Brian J.; Zhulin, Igor B.
2010-01-01
Two-component signal transduction systems are abundant in prokaryotes. They enable cells to adjust multiple cellular functions in response to changing environmental conditions. These systems are also found, although in much smaller numbers, in lower eukaryotes and plants, where they appear to control a few very specific functions. Two-component systems have evolved in Bacteria from much simpler one-component systems bringing about the benefit of extracellular versus intracellular sensing. We ...
Variational derivation of two-component Camassa-Holm shallow water system
Ionescu-Kruse, Delia
2012-01-01
By a variational approach in the Lagrangian formalism, we derive the nonlinear integrable two-component Camassa-Holm system (1). We show that the two-component Camassa-Holm system (1) with the plus sign arises as an approximation to the Euler equations of hydrodynamics for propagation of irrotational shallow water waves over a flat bed. The Lagrangian used in the variational derivation is not a metric.
Chloroplast two-component systems: evolution of the link between photosynthesis and gene expression
Puthiyaveetil, Sujith; Allen, John F.
2009-01-01
Two-component signal transduction, consisting of sensor kinases and response regulators, is the predominant signalling mechanism in bacteria. This signalling system originated in prokaryotes and has spread throughout the eukaryotic domain of life through endosymbiotic, lateral gene transfer from the bacterial ancestors and early evolutionary precursors of eukaryotic, cytoplasmic, bioenergetic organelles—chloroplasts and mitochondria. Until recently, it was thought that two-component systems i...
Point Contacts in Modeling Conducting 2D Planar Structures
Thiel, David V; Hettenhausen, Jan; Lewis, Andrew
2015-01-01
Use of an optimization algorithm to improve performance of antennas and electromagnetic structures usually ends up in planar unusual shapes. Using rectangular conducting elements the proposed structures sometimes have connections with only one single point in common between two neighboring areas. The single point connections (point crossing) can affect the electromagnetic performance of the structure. In this letter, we illustrate the influence of point crossing on dipole and loop antennas using MoM, FDTD, and FEM solvers. Current distribution, radiation pattern, and impedance properties for different junctions are different. These solvers do not agree in the modeling of the point crossing junctions which is a warning about uncertainty in using such junctions. However, solvers agree that a negligible change in the junction would significantly change the antenna performance. We propose that one should consider both bridging and chamfering of the conflicting cells to find optimized structures. This reduces the ...
Model Hamiltonian for the conductivity oscillations of magnetic multilayers
Weissmann, Mariana; Llois, Ana Maria; Kiwi, Miguel; Ramirez, Ricardo
1997-03-01
The behavior of the electrical conductivity as a function of layer thickness of the superlattice systems Ni/Co, Ni/Cu and Pd/Ag is studied. Experimentally an oscillatory dependence was found for the first two, while the latter exhibited a monotonous behavior. In our previous calculations we found that, in these superlattices, the current is carried by the sp--character electrons, which are quite insensitive to the interfaces. Therefore, to interpret the experimentally observed resistivity oscillations, we suggest a scattering mechanism of these carriers against d--character quantum well states that are present in only one of the superlattice materials, when the well state energy is close to E_F. To explore the validity of this mechanism we have put forward a model Hamiltonian which, for reasonable values of the parameters, leads to results in good agreement with experiments.
Current fluctuations in a two dimensional model of heat conduction
Pérez-Espigares, Carlos; Garrido, Pedro L.; Hurtado, Pablo I.
2011-03-01
In this work we study numerically and analytically current fluctuations in the two-dimensional Kipnis-Marchioro-Presutti (KMP) model of heat conduction. For that purpose, we use a recently introduced algorithm which allows the direct evaluation of large deviations functions. We compare our results with predictions based on the Hydrodynamic Fluctuation Theory (HFT) of Bertini and coworkers, finding very good agreement in a wide interval of current fluctuations. We also verify the existence of a well-defined temperature profile associated to a given current fluctuation which depends exclusively on the magnitude of the current vector, not on its orientation. This confirms the recently introduced Isometric Fluctuation Relation (IFR), which results from the time-reversibility of the dynamics, and includes as a particular instance the Gallavotti-Cohen fluctuation theorem in this context but adds a completely new perspective on the high level of symmetry imposed by timereversibility on the statistics of nonequilibrium fluctuations.
Two-component mediated peroxide sensing and signal transduction in fission yeast.
Quinn, Janet; Malakasi, Panagiota; Smith, Deborah A; Cheetham, Jill; Buck, Vicky; Millar, Jonathan B A; Morgan, Brian A
2011-07-01
Two-component related proteins play a major role in regulating the oxidative stress response in the fission yeast, Schizosaccharomyces pombe. For example, the peroxide-sensing Mak2 and Mak3 histidine kinases regulate H(2)O(2)-induced activation of the Sty1 stress-activated protein kinase pathway, and the Skn7-related response regulator transcription factor, Prr1, is essential for activation of the core oxidative stress response genes. Here, we investigate the mechanism by which the S. pombe two-component system senses H(2)O(2), and the potential role of two-component signaling in the regulation of Prr1. Significantly, we demonstrate that PAS and GAF domains present in the Mak2 histidine kinase are essential for redox-sensing and activation of Sty1. In addition, we find that Prr1 is required for the transcriptional response to a wide range of H(2)O(2) concentrations and, furthermore, that two-component regulation of Prr1 is specifically required for the response of cells to high levels of H(2)O(2). Significantly, this provides the first demonstration that the conserved two-component phosphorylation site on Skn7-related proteins influences resistance to oxidative stress and oxidative stress-induced gene expression. Collectively, these data provide new insights into the two-component mediated sensing and signaling mechanisms underlying the response of S. pombe to oxidative stress.
Christensen, Steen; Serbus, Laura Renee
2015-03-24
Two-component regulatory systems are commonly used by bacteria to coordinate intracellular responses with environmental cues. These systems are composed of functional protein pairs consisting of a sensor histidine kinase and cognate response regulator. In contrast to the well-studied Caulobacter crescentus system, which carries dozens of these pairs, the streamlined bacterial endosymbiont Wolbachia pipientis encodes only two pairs: CckA/CtrA and PleC/PleD. Here, we used bioinformatic tools to compare characterized two-component system relays from C. crescentus, the related Anaplasmataceae species Anaplasma phagocytophilum and Ehrlichia chaffeensis, and 12 sequenced Wolbachia strains. We found the core protein pairs and a subset of interacting partners to be highly conserved within Wolbachia and these other Anaplasmataceae. Genes involved in two-component signaling were positioned differently within the various Wolbachia genomes, whereas the local context of each gene was conserved. Unlike Anaplasma and Ehrlichia, Wolbachia two-component genes were more consistently found clustered with metabolic genes. The domain architecture and key functional residues standard for two-component system proteins were well-conserved in Wolbachia, although residues that specify cognate pairing diverged substantially from other Anaplasmataceae. These findings indicate that Wolbachia two-component signaling pairs share considerable functional overlap with other α-proteobacterial systems, whereas their divergence suggests the potential for regulatory differences and cross-talk.
Parabolic Anderson Model in a Dynamic Random Environment: Random Conductances
Erhard, D.; den Hollander, F.; Maillard, G.
2016-06-01
The parabolic Anderson model is defined as the partial differential equation ∂ u( x, t)/ ∂ t = κ Δ u( x, t) + ξ( x, t) u( x, t), x ∈ ℤ d , t ≥ 0, where κ ∈ [0, ∞) is the diffusion constant, Δ is the discrete Laplacian, and ξ is a dynamic random environment that drives the equation. The initial condition u( x, 0) = u 0( x), x ∈ ℤ d , is typically taken to be non-negative and bounded. The solution of the parabolic Anderson equation describes the evolution of a field of particles performing independent simple random walks with binary branching: particles jump at rate 2 d κ, split into two at rate ξ ∨ 0, and die at rate (- ξ) ∨ 0. In earlier work we looked at the Lyapunov exponents λ p(κ ) = limlimits _{tto ∞} 1/t log {E} ([u(0,t)]p)^{1/p}, quad p in {N} , qquad λ 0(κ ) = limlimits _{tto ∞} 1/2 log u(0,t). For the former we derived quantitative results on the κ-dependence for four choices of ξ : space-time white noise, independent simple random walks, the exclusion process and the voter model. For the latter we obtained qualitative results under certain space-time mixing conditions on ξ. In the present paper we investigate what happens when κΔ is replaced by Δ𝓚, where 𝓚 = {𝓚( x, y) : x, y ∈ ℤ d , x ˜ y} is a collection of random conductances between neighbouring sites replacing the constant conductances κ in the homogeneous model. We show that the associated annealed Lyapunov exponents λ p (𝓚), p ∈ ℕ, are given by the formula λ p({K} ) = {sup} {λ p(κ ) : κ in {Supp} ({K} )}, where, for a fixed realisation of 𝓚, Supp(𝓚) is the set of values taken by the 𝓚-field. We also show that for the associated quenched Lyapunov exponent λ 0(𝓚) this formula only provides a lower bound, and we conjecture that an upper bound holds when Supp(𝓚) is replaced by its convex hull. Our proof is valid for three classes of reversible ξ, and for all 𝓚
Champion, D J; Kramer, M; Keith, M J; Bailes, M; Barr, E D; Bates, S D; Bhat, N D R; Burgay, M; Burke-Spolaor, S; Flynn, C M L; Jameson, A; Johnston, S; Ng, C; Levin, L; Possenti, A; Stappers, B W; van Straten, W; Tiburzi, C; Lyne, A G
2015-01-01
The detection of five new fast radio bursts (FRBs) found in the High Time Resolution Universe high latitude survey is presented. The rate implied is 6$^{+4}_{-3}\\times~10^3$ (95%) FRBs sky$^{-1}$ day$^{-1}$ above a fluence of between 0.13 and 5.9 Jy ms for FRBs between 0.128 and 262 ms in duration. One of these FRBs has a clear two-component profile, each component is similar to the known population of single component FRBs and are separated by 2.4(4) ms. All the FRB components appear to be unresolved following deconvolution with a scattering tail and accounting for intra-channel smearing. The two-component FRB also has the highest dispersion measure (1629 pc cm$^{-3}$) of any FRB to-date. Many of the proposed models to explain FRBs use a single high energy event involving compact objects (such as neutron star mergers) and therefore cannot easily explain a two-component FRB. Models that are based on extreme versions of flaring, pulsing or orbital events however could produce multiple component profiles. The c...
Inverse modeling for heat conduction problem in human abdominal phantom.
Huang, Ming; Chen, Wenxi
2011-01-01
Noninvasive methods for deep body temperature measurement are based on the principle of heat equilibrium between the thermal sensor and the target location theoretically. However, the measurement position is not able to be definitely determined. In this study, a 2-dimensional mathematical model was built based upon some assumptions for the physiological condition of the human abdomen phantom. We evaluated the feasibility in estimating the internal organs temperature distribution from the readings of the temperature sensors arranged on the skin surface. It is a typical inverse heat conduction problem (IHCP), and is usually mathematically ill-posed. In this study, by integrating some physical and physiological a-priori information, we invoked the quasi-linear (QL) method to reconstruct the internal temperature distribution. The solutions of this method were improved by increasing the accuracy of the sensors and adjusting their arrangement on the outer surface, and eventually reached the state of converging at the best state accurately. This study suggests that QL method is able to reconstruct the internal temperature distribution in this phantom and might be worthy of a further study in an anatomical based model.
Thin inclusion approach for modelling of heterogeneous conducting materials
Energy Technology Data Exchange (ETDEWEB)
Lavrov, Nikolay [Davenport University, 4801 Oakman Boulevard, Dearborn, MI 48126 (United States); Smirnova, Alevtina; Gorgun, Haluk; Sammes, Nigel [University of Connecticut, Department of Materials Science and Engineering, Connecticut Global Fuel Center, 44 Weaver Road, Unit 5233, Storrs, CT 06269 (United States)
2006-04-21
Experimental data show that heterogeneous nanostructure of solid oxide and polymer electrolyte fuel cells could be approximated as an infinite set of fiber-like or penny-shaped inclusions in a continuous medium. Inclusions can be arranged in a cluster mode and regular or random order. In the newly proposed theoretical model of nanostructured material, the most attention is paid to the small aspect ratio of structural elements as well as to some model problems of electrostatics. The proposed integral equation for electric potential caused by the charge distributed over the single circular or elliptic cylindrical conductor of finite length, as a single unit of a nanostructured material, has been asymptotically simplified for the small aspect ratio and solved numerically. The result demonstrates that surface density changes slightly in the middle part of the thin domain and has boundary layers localized near the edges. It is anticipated, that contribution of boundary layer solution to the surface density is significant and cannot be governed by classic equation for smooth linear charge. The role of the cross-section shape is also investigated. Proposed approach is sufficiently simple, robust and allows extension to either regular or irregular system of various inclusions. This approach can be used for the development of the system of conducting inclusions, which are commonly present in nanostructured materials used for solid oxide and polymer electrolyte fuel cell (PEMFC) materials. (author)
Direct molecular dynamics simulation of liquid-solid phase equilibria for two-component plasmas.
Schneider, A S; Hughto, J; Horowitz, C J; Berry, D K
2012-06-01
We determine the liquid-solid phase diagram for carbon-oxygen and oxygen-selenium plasma mixtures using two-phase molecular dynamics simulations. We identify liquid, solid, and interface regions using a bond angle metric. To study finite-size effects, we perform 27,648- and 55,296-ion simulations. To help monitor nonequilibrium effects, we calculate diffusion constants D(i). For the carbon-oxygen system we find that D(O) for oxygen ions in the solid is much smaller than D(C) for carbon ions and that both diffusion constants are 80 or more times smaller than diffusion constants in the liquid phase. There is excellent agreement between our carbon-oxygen phase diagram and that predicted by Medin and Cumming. This suggests that errors from finite-size and nonequilibrium effects are small and that the carbon-oxygen phase diagram is now accurately known. The oxygen-selenium system is a simple two-component model for more complex rapid proton capture nucleosynthesis ash compositions for an accreting neutron star. Diffusion of oxygen, in a predominantly selenium crystal, is remarkably fast, comparable to diffusion in the liquid phase. We find a somewhat lower melting temperature for the oxygen-selenium system than that predicted by Medin and Cumming. This is probably because of electron screening effects.
Vortices with scalar condensates in two-component Ginzburg-Landau systems
Forgacs, Peter
2016-01-01
In a class of two-component Ginzburg-Landau models (TCGL) with a U(1)$\\times$U(1) symmetric potential, vortices with a condensate at their core may have significantly lower energies than the Abrikosov-Nielsen-Olesen (ANO) ones. On the example of liquid metallic hydrogen (LMH) above the critical temperature for protons we show that the ANO vortices become unstable against core-condensation, while condensate-core (CC) vortices are stable. For LMH the ratio of the masses of the two types of condensates, $M=m_2/m_1$ is large, and then as a consequence the energy per flux quantum of the vortices, $E_n/n$ becomes a non-monotonous function of the number of flux quanta, $n$. This leads to yet another manifestation of neither type 1 nor type 2, (type 1.5) superconductivity: superconducting and normal domains coexist while various "giant" vortices form. We note that LMH provides a particularly clean example of type 1.5 state as the interband coupling between electronic and protonic Cooper-pairs is forbidden.
Osmotic Second Virial Coefficients of Aqueous Solutions from Two-Component Equations of State.
Cerdeiriña, Claudio A; Widom, B
2016-12-29
Osmotic second virial coefficients in dilute aqueous solutions of small nonpolar solutes are calculated from three different two-component equations of state. The solutes are five noble gases, four diatomics, and six hydrocarbons in the range C1-C4. The equations of state are modified versions of the van der Waals, Redlich-Kwong, and Peng-Robinson equations, with an added hydrogen-bonding term for the solvent water. The parameters in the resulting equations of state are assigned so as to reproduce the experimental values and temperature dependence of the density, vapor pressure, and compressibility of the solvent, the gas-phase second virial coefficient of the pure solute, the solubility and partial molecular volume of the solute, and earlier estimates of the solutes' molecular radii. For all 15 solutes, the calculations are done for 298.15 K, whereas for CH4, C2H6, and C3H8 in particular, they are also done as functions of temperature over the full range 278.15-348.15 K. The calculated osmotic virial coefficients are compared with earlier calculations of these coefficients for these solutes and also with the results derived from earlier computer simulations of model aqueous solutions of methane. They are also compared with the experimental gas-phase second virial coefficients of the pure gaseous solutes to determine the effect the mediation of the solvent has on the resulting solute-solute interactions in the solution.
Adhesion-induced phase behavior of two-component membranes and vesicles.
Rouhiparkouhi, Tahereh; Weikl, Thomas R; Discher, Dennis E; Lipowsky, Reinhard
2013-01-22
The interplay of adhesion and phase separation is studied theoretically for two-component membranes that can phase separate into two fluid phases such as liquid-ordered and liquid-disordered phases. Many adhesion geometries provide two different environments for these membranes and then partition the membranes into two segments that differ in their composition. Examples are provided by adhering vesicles, by hole- or pore-spanning membranes, and by membranes supported by chemically patterned surfaces. Generalizing a lattice model for binary mixtures to these adhesion geometries, we show that the phase behavior of the adhering membranes depends, apart from composition and temperature, on two additional parameters, the area fraction of one membrane segment and the affinity contrast between the two segments. For the generic case of non-vanishing affinity contrast, the adhering membranes undergo two distinct phase transitions and the phase diagrams in the composition/temperature plane have a generic topology that consists of two two-phase coexistence regions separated by an intermediate one-phase region. As a consequence, phase separation and domain formation is predicted to occur separately in each of the two membrane segments but not in both segments simultaneously. Furthermore, adhesion is also predicted to suppress the phase separation process for certain regions of the phase diagrams. These generic features of the adhesion-induced phase behavior are accessible to experiment.
Bayesian Model Averaging of Artificial Intelligence Models for Hydraulic Conductivity Estimation
Nadiri, A.; Chitsazan, N.; Tsai, F. T.; Asghari Moghaddam, A.
2012-12-01
This research presents a Bayesian artificial intelligence model averaging (BAIMA) method that incorporates multiple artificial intelligence (AI) models to estimate hydraulic conductivity and evaluate estimation uncertainties. Uncertainty in the AI model outputs stems from error in model input as well as non-uniqueness in selecting different AI methods. Using one single AI model tends to bias the estimation and underestimate uncertainty. BAIMA employs Bayesian model averaging (BMA) technique to address the issue of using one single AI model for estimation. BAIMA estimates hydraulic conductivity by averaging the outputs of AI models according to their model weights. In this study, the model weights were determined using the Bayesian information criterion (BIC) that follows the parsimony principle. BAIMA calculates the within-model variances to account for uncertainty propagation from input data to AI model output. Between-model variances are evaluated to account for uncertainty due to model non-uniqueness. We employed Takagi-Sugeno fuzzy logic (TS-FL), artificial neural network (ANN) and neurofuzzy (NF) to estimate hydraulic conductivity for the Tasuj plain aquifer, Iran. BAIMA combined three AI models and produced better fitting than individual models. While NF was expected to be the best AI model owing to its utilization of both TS-FL and ANN models, the NF model is nearly discarded by the parsimony principle. The TS-FL model and the ANN model showed equal importance although their hydraulic conductivity estimates were quite different. This resulted in significant between-model variances that are normally ignored by using one AI model.
Oxygen reduction kinetics on mixed conducting SOFC model cathodes
Energy Technology Data Exchange (ETDEWEB)
Baumann, F.S.
2006-07-01
The kinetics of the oxygen reduction reaction at the surface of mixed conducting solid oxide fuel cell (SOFC) cathodes is one of the main limiting factors to the performance of these promising systems. For ''realistic'' porous electrodes, however, it is usually very difficult to separate the influence of different resistive processes. Therefore, a suitable, geometrically well-defined model system was used in this work to enable an unambiguous distinction of individual electrochemical processes by means of impedance spectroscopy. The electrochemical measurements were performed on dense thin film microelectrodes, prepared by PLD and photolithography, of mixed conducting perovskite-type materials. The first part of the thesis consists of an extensive impedance spectroscopic investigation of La0.6Sr0.4Co0.8Fe0.2O3 (LSCF) microelectrodes. An equivalent circuit was identified that describes the electrochemical properties of the model electrodes appropriately and enables an unambiguous interpretation of the measured impedance spectra. Hence, the dependencies of individual electrochemical processes such as the surface exchange reaction on a wide range of experimental parameters including temperature, dc bias and oxygen partial pressure could be studied. As a result, a comprehensive set of experimental data has been obtained, which was previously not available for a mixed conducting model system. In the course of the experiments on the dc bias dependence of the electrochemical processes a new and surprising effect was discovered: It could be shown that a short but strong dc polarisation of a LSCF microelectrode at high temperature improves its electrochemical performance with respect to the oxygen reduction reaction drastically. The electrochemical resistance associated with the oxygen surface exchange reaction, initially the dominant contribution to the total electrode resistance, can be reduced by two orders of magnitude. This &apos
Lombardozzi, Danica; Sparks, Jed P; Bonan, Gordon; Levis, Samuel
2012-07-01
Industrialization has significantly altered atmospheric chemistry by increasing concentrations of chemicals such as nitrogen oxides (NO( x )) and volatile organic carbon, which react in the presence of sunlight to produce tropospheric ozone (O(3)). Ozone is a powerful oxidant that causes both visual and physiological damage to plants, impairing the ability of the plant to control processes like photosynthesis and transpiration. Damage to photosynthesis and stomatal conductance does not always occur at the same rate, which generates a problem when using the Ball-Berry model to predict stomatal conductance because the calculations directly rely on photosynthesis rates. The goals of this work were to develop a modeling framework to modify Ball-Berry stomatal conductance predictions independently of photosynthesis and to test the framework using experimental data. After exposure to elevated O(3) in open-top chambers, photosynthesis and stomatal conductance in tulip poplar changed at different rates through time. We were able to accurately model observed photosynthetic and stomatal conductance responses to chronic O(3) exposure in a Ball-Berry framework by adjusting stomatal conductance in addition to photosynthesis. This led to a significant improvement in the modeled ability to predict both photosynthesis and stomatal conductance responses to O(3).
Modeling geomagnetic induction hazards using a 3-D electrical conductivity model of Australia
Wang, Liejun; Lewis, Andrew M.; Ogawa, Yasuo; Jones, William V.; Costelloe, Marina T.
2016-12-01
The surface electric field induced by external geomagnetic source fields is modeled for a continental-scale 3-D electrical conductivity model of Australia at periods of a few minutes to a few hours. The amplitude and orientation of the induced electric field at periods of 360 s and 1800 s are presented and compared to those derived from a simplified ocean-continent (OC) electrical conductivity model. It is found that the induced electric field in the Australian region is distorted by the heterogeneous continental electrical conductivity structures and surrounding oceans. On the northern coastlines, the induced electric field is decreased relative to the simple OC model due to a reduced conductivity contrast between the seas and the enhanced conductivity structures inland. In central Australia, the induced electric field is less distorted with respect to the OC model as the location is remote from the oceans, but inland crustal high-conductivity anomalies are the major source of distortion of the induced electric field. In the west of the continent, the lower conductivity of the Western Australia Craton increases the conductivity contrast between the deeper oceans and land and significantly enhances the induced electric field. Generally, the induced electric field in southern Australia, south of latitude -20°, is higher compared to northern Australia. This paper provides a regional indicator of geomagnetic induction hazards across Australia.
The Escherichia coli BarA-UvrY two-component system is a virulence determinant in the urinary tract
Directory of Open Access Journals (Sweden)
Georgellis Dimitris
2006-03-01
Full Text Available Abstract Background The Salmonella enterica BarA-SirA, the Erwinia carotovora ExpS-ExpA, the Vibrio cholerae BarA-VarA and the Pseudomonas spp GacS-GacA all belong to the same orthologous family of two-component systems as the Escherichia coli BarA-UvrY. In the first four species it has been demonstrated that disruption of this two-component system leads to a clear reduction in virulence of the bacteria. Our aim was to determine if the Escherichia coli BarA-UvrY two-component system is connected with virulence using a monkey cystitis model. Results Cystitis was generated in Macaque fascularis monkeys by infecting the bladder with a 1:1 mixture of the uropathogenic Escherichia coli isolate DS17 and a derivative where the uvrY gene had been disrupted with a kanamycin resistance gene. Urine was collected through bladder punctuation at subsequent time intervals and the relative amount of uvrY mutant was determined. This showed that inactivation of the UvrY response regulator leads to a reduced fitness. In similar competitions in culture flasks with Luria Broth (LB the uvrY mutant rather had a higher fitness than the wild type. When the competitions were done in flasks with human urine the uvrY mutant initially had a lower fitness. This was followed by a fluctuation in the level of mutant in the long-term culture, with a pattern that was specific for the individual urines that were tested. Addition of LB to the different urine competition cultures however clearly led to a consistently higher fitness of the uvrY mutant. Conclusion This paper demonstrates that the BarA-UvrY two-component system is a determinant for virulence in a monkey cystitis model. The observed competition profiles strengthen our previous hypothesis that disruption of the BarA-UvrY two-component system impairs the ability of the bacteria to switch between different carbon sources. The urine in the bladder contains several different carbon sources and its composition changes over
Directory of Open Access Journals (Sweden)
Jeffrey M Skerker
2005-10-01
Full Text Available Two-component signal transduction systems, comprised of histidine kinases and their response regulator substrates, are the predominant means by which bacteria sense and respond to extracellular signals. These systems allow cells to adapt to prevailing conditions by modifying cellular physiology, including initiating programs of gene expression, catalyzing reactions, or modifying protein-protein interactions. These signaling pathways have also been demonstrated to play a role in coordinating bacterial cell cycle progression and development. Here we report a system-level investigation of two-component pathways in the model organism Caulobacter crescentus. First, by a comprehensive deletion analysis we show that at least 39 of the 106 two-component genes are required for cell cycle progression, growth, or morphogenesis. These include nine genes essential for growth or viability of the organism. We then use a systematic biochemical approach, called phosphotransfer profiling, to map the connectivity of histidine kinases and response regulators. Combining these genetic and biochemical approaches, we identify a new, highly conserved essential signaling pathway from the histidine kinase CenK to the response regulator CenR, which plays a critical role in controlling cell envelope biogenesis and structure. Depletion of either cenK or cenR leads to an unusual, severe blebbing of cell envelope material, whereas constitutive activation of the pathway compromises cell envelope integrity, resulting in cell lysis and death. We propose that the CenK-CenR pathway may be a suitable target for new antibiotic development, given previous successes in targeting the bacterial cell wall. Finally, the ability of our in vitro phosphotransfer profiling method to identify signaling pathways that operate in vivo takes advantage of an observation that histidine kinases are endowed with a global kinetic preference for their cognate response regulators. We propose that this
Lubin, Emma A.; Ashenberg, Orr; Skerker, Jeffrey M.; Laub, Michael T.
2010-01-01
Two-component signal transduction systems enable bacteria to sense and respond to a wide range of environmental stimuli. Sensor histidine kinases transmit signals to their cognate response regulators via phosphorylation. The faithful transmission of information through two-component pathways and the avoidance of unwanted cross-talk require exquisite specificity of histidine kinase-response regulator interactions to ensure that cells mount the appropriate response to external signals. To identify putative specificity-determining residues, we have analyzed amino acid coevolution in two-component proteins and identified a set of residues that can be used to rationally rewire a model signaling pathway, EnvZ-OmpR. To explore how a relatively small set of residues can dictate partner selectivity, we combined alanine-scanning mutagenesis with an approach we call trajectory-scanning mutagenesis, in which all mutational intermediates between the specificity residues of EnvZ and another kinase, RstB, were systematically examined for phosphotransfer specificity. The same approach was used for the response regulators OmpR and RstA. Collectively, the results begin to reveal the molecular mechanism by which a small set of amino acids enables an individual kinase to discriminate amongst a large set of highly-related response regulators and vice versa. Our results also suggest that the mutational trajectories taken by two-component signaling proteins following gene or pathway duplication may be constrained and subject to differential selective pressures. Only some trajectories allow both the maintenance of phosphotransfer and the avoidance of unwanted cross-talk. PMID:21124821
Skerker, Jeffrey M; Prasol, Melanie S; Perchuk, Barrett S; Biondi, Emanuele G
2005-01-01
Two-component signal transduction systems, comprised of histidine kinases and their response regulator substrates, are the predominant means by which bacteria sense and respond to extracellular signals. These systems allow cells to adapt to prevailing conditions by modifying cellular physiology, including initiating programs of gene expression, catalyzing reactions, or modifying protein–protein interactions. These signaling pathways have also been demonstrated to play a role in coordinating bacterial cell cycle progression and development. Here we report a system-level investigation of two-component pathways in the model organism Caulobacter crescentus. First, by a comprehensive deletion analysis we show that at least 39 of the 106 two-component genes are required for cell cycle progression, growth, or morphogenesis. These include nine genes essential for growth or viability of the organism. We then use a systematic biochemical approach, called phosphotransfer profiling, to map the connectivity of histidine kinases and response regulators. Combining these genetic and biochemical approaches, we identify a new, highly conserved essential signaling pathway from the histidine kinase CenK to the response regulator CenR, which plays a critical role in controlling cell envelope biogenesis and structure. Depletion of either cenK or cenR leads to an unusual, severe blebbing of cell envelope material, whereas constitutive activation of the pathway compromises cell envelope integrity, resulting in cell lysis and death. We propose that the CenK–CenR pathway may be a suitable target for new antibiotic development, given previous successes in targeting the bacterial cell wall. Finally, the ability of our in vitro phosphotransfer profiling method to identify signaling pathways that operate in vivo takes advantage of an observation that histidine kinases are endowed with a global kinetic preference for their cognate response regulators. We propose that this system
Bott, Michael; Brocker, Melanie
2012-06-01
In bacteria, adaptation to changing environmental conditions is often mediated by two-component signal transduction systems. In the prototypical case, a specific stimulus is sensed by a membrane-bound histidine kinase and triggers autophosphorylation of a histidine residue. Subsequently, the phosphoryl group is transferred to an aspartate residue of the cognate response regulator, which then becomes active and mediates a specific response, usually by activating and/or repressing a set of target genes. In this review, we summarize the current knowledge on two-component signal transduction in Corynebacterium glutamicum. This Gram-positive soil bacterium is used for the large-scale biotechnological production of amino acids and can also be applied for the synthesis of a wide variety of other products, such as organic acids, biofuels, or proteins. Therefore, C. glutamicum has become an important model organism in industrial biotechnology and in systems biology. The type strain ATCC 13032 possesses 13 two-component systems and the role of five has been elucidated in recent years. They are involved in citrate utilization (CitAB), osmoregulation and cell wall homeostasis (MtrAB), adaptation to phosphate starvation (PhoSR), adaptation to copper stress (CopSR), and heme homeostasis (HrrSA). As C. glutamicum does not only face changing conditions in its natural environment, but also during cultivation in industrial bioreactors of up to 500 m(3) volume, adaptability can also be crucial for good performance in biotechnological production processes. Detailed knowledge on two-component signal transduction and regulatory networks therefore will contribute to both the application and the systemic understanding of C. glutamicum and related species.
Thermal conductivity modeling of circular-wire nanocomposites
Hsieh, Tse-Yang; Yang, Jaw-Yen
2010-08-01
A phonon Boltzmann equation solver using multiblock-structured grid system is developed and applied to study transverse thermal transport in silicon-germanium circular-wire nanocomposite (silicon nanowires embedded in germanium host matrix). Past studies usually assume geometric simplification for the circular-wire nanocomposite, so the heat transfer is actually modeled in a square-wire nanocomposite. To demonstrate geometry effect, phonon transport in both the circular-wire and square-wire nanocomposites are investigated with various wire spacings, volume fractions, and dimensions. In ballistic phonon transport, due to the smoothness of circular shape, the circular wire imposes less thermal resistance than the square wire. Nevertheless, in the geometric simplification, the wire spacing of the square-wire nanocomposite is larger than that of the circular-wire nanocomposite. The usual geometric simplification can overestimate the thermal conductivity of the circular-wire nanocomposite. The obtained results can provide essential information for the development of bulk-nanostructured thermoelectric devices.
Quantitative Kinetic Analyses of Shutting Off a Two-Component System
Directory of Open Access Journals (Sweden)
Rong Gao
2017-05-01
Full Text Available Cells rely on accurate control of signaling systems to adapt to environmental perturbations. System deactivation upon stimulus removal is as important as activation of signaling pathways. The two-component system (TCS is one of the major bacterial signaling schemes. In many TCSs, phosphatase activity of the histidine kinase (HK is believed to play an essential role in shutting off the pathway and resetting the system to the prestimulus state. Two basic challenges are to understand the dynamic behavior of system deactivation and to quantitatively evaluate the role of phosphatase activity under natural cellular conditions. Here we report a kinetic analysis of the response to shutting off the archetype Escherichia coli PhoR-PhoB TCS pathway using both transcription reporter assays and in vivo phosphorylation analyses. Upon removal of the stimulus, the pathway is shut off by rapid dephosphorylation of the PhoB response regulator (RR while PhoB-regulated gene products gradually reset to prestimulus levels through growth dilution. We developed an approach combining experimentation and modeling to assess in vivo kinetic parameters of the phosphatase activity with kinetic data from multiple phosphatase-diminished mutants. This enabled an estimation of the PhoR phosphatase activity in vivo, which is much stronger than the phosphatase activity of PhoR cytoplasmic domains analyzed in vitro. We quantitatively modeled how strong the phosphatase activity needs to be to suppress nonspecific phosphorylation in TCSs and discovered that strong phosphatase activity of PhoR is required for cross-phosphorylation suppression.
Temporal Variability from the Two-Component Advective Flow Solution and Its Observational Evidence
Dutta, Broja G.; Chakrabarti, Sandip K.
2016-09-01
In the propagating oscillatory shock model, the oscillation of the post-shock region, i.e., the Compton cloud, causes the observed low-frequency quasi-periodic oscillations (QPOs). The evolution of QPO frequency is explained by the systematic variation of the Compton cloud size, i.e., the steady radial movement of the shock front, which is triggered by the cooling of the post-shock region. Thus, analysis of the energy-dependent temporal properties in different variability timescales can diagnose the dynamics and geometry of accretion flows around black holes. We study these properties for the high-inclination black hole source XTE J1550-564 during its 1998 outburst and the low-inclination black hole source GX 339-4 during its 2006-07 outburst using RXTE/PCA data, and we find that they can satisfactorily explain the time lags associated with the QPOs from these systems. We find a smooth decrease of the time lag as a function of time in the rising phase of both sources. In the declining phase, the time lag increases with time. We find a systematic evolution of QPO frequency and hard lags in these outbursts. In XTE J1550-564, the lag changes from hard to soft (i.e., from a positive to a negative value) at a crossing frequency (ν c) of ˜3.4 Hz. We present possible mechanisms to explain the lag behavior of high and low-inclination sources within the framework of a single two-component advective flow model.
Study of gap conductance model for thermo mechanical fully coupled finite element model
Energy Technology Data Exchange (ETDEWEB)
Kim, Hyo Cha; Yang, Yong Sik; Kim, Dae Ho; Bang, Je Geon; Kim, Sun Ki; Koo, Yang Hyun [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)
2012-10-15
A light water reactor (LWR) fuel rod consists of zirconium alloy cladding and uranium dioxide pellets, with a slight gap between them. Therefore, the mechanical integrity of zirconium alloy cladding is the most critical issue, as it is an important barrier for fission products released into the environment. To evaluate the stress and strain of the cladding during operation, fuel performance codes with a one-dimensional (1D) approach have been reported since the 1970s. However, it is difficult for a 1D model to simulate the stress and strain of the cladding accurately owing to a lack of degree of freedom. A LWR fuel performance code should include thermo-mechanical coupled model owing to the existence of the fuel-cladding gap. Generally, the gap that is filled with helium gas results in temperature drop along radius direction. The gap conductance that determines temperature gradient within the gap is very sensitive to gap thickness. For instance, once the gap size increases up to several microns in certain region, difference of surface temperatures increases up to 100 Kelvin. Therefore, iterative thermo-mechanical coupled analysis is required to solve temperature distribution throughout pellet and cladding. Consequently, the Finite Element (FE) module, which can simulate a higher degree of freedom numerically, is an indispensable requirement to understand the thermomechanical behavior of cladding. FRAPCON-3, which is reliable performance code, has iterative loop for thermo-mechanical coupled calculation to solve 1D gap conductance model. In FEMAXI-III, 1D thermal analysis module and FE module for stress-strain analysis were separated. 1D thermal module includes iterative analysis between them. DIONISIO code focused on thermal contact model as function of surface roughness and contact pressure when the gap is closed. In previous works, gap conductance model has been developed only for 1D model or hybrid model (1D and FE). To simulate temperature, stress and strain
Block algebra in two-component BKP and D type Drinfeld-Sokolov hierarchies
Li, Chuanzhong; He, Jingsong
2013-11-01
We construct generalized additional symmetries of a two-component BKP hierarchy defined by two pseudo-differential Lax operators. These additional symmetry flows form a Block type algebra with some modified (or additional) terms because of a B type reduction condition of this integrable hierarchy. Further we show that the D type Drinfeld-Sokolov hierarchy, which is a reduction of the two-component BKP hierarchy, possess a complete Block type additional symmetry algebra. That D type Drinfeld-Sokolov hierarchy has a similar algebraic structure as the bigraded Toda hierarchy which is a differential-discrete integrable system.
Rabi Oscillations in Two-Component Bose-Einstein Condensates with a Coupling Drive
Institute of Scientific and Technical Information of China (English)
LI Wei-Dong; FAN Wen-Bing; ZHOU Xiao-Ji; WANG Yi-Qiu; LIANG Jiu-Qing
2002-01-01
The Rabi oscillations in two-component Bose-Einstein condensates with a coupling drive are studiedby means of a pair of bosonic operators. The coupling drive and initial phase difference will affect the amplitudeand the period of the Rabi oscillations. The Rabi oscillations will vanish in the evolution of the condensate densityfor some special initial phase differences (ψ = 0 or π). Our theory provides not only an analytical framework forquantitative predictions for two-component condensates, but also gives an intuitive understanding of some mysteriousfeatures observed in experiments and numerical. simulations.
Targeting two-component signal transduction: a novel drug discovery system.
Okada, Ario; Gotoh, Yasuhiro; Watanabe, Takafumi; Furuta, Eiji; Yamamoto, Kaneyoshi; Utsumi, Ryutaro
2007-01-01
We have developed two screening systems for isolating inhibitors that target bacterial two-component signal transduction: (1) a differential growth assay using a temperature-sensitive yycF mutant (CNM2000) of Bacillus subtilis, which is supersensitive to histidine kinase inhibitors, and (2) a high-throughput genetic system for targeting the homodimerization of histidine kinases essential for the bacterial two-component signal transduction. By using these methods, we have been able to identify various types of inhibitors that block the autophosphorylation of histidine kinases with different modes of actions.
Block algebra in two-component BKP and D type Drinfeld-Sokolov hierarchies
Energy Technology Data Exchange (ETDEWEB)
Li, Chuanzhong, E-mail: lichuanzhong@nbu.edu.cn; He, Jingsong, E-mail: hejingsong@nbu.edu.cn [Department of Mathematics, Ningbo University, Ningbo 315211 (China)
2013-11-15
We construct generalized additional symmetries of a two-component BKP hierarchy defined by two pseudo-differential Lax operators. These additional symmetry flows form a Block type algebra with some modified (or additional) terms because of a B type reduction condition of this integrable hierarchy. Further we show that the D type Drinfeld-Sokolov hierarchy, which is a reduction of the two-component BKP hierarchy, possess a complete Block type additional symmetry algebra. That D type Drinfeld-Sokolov hierarchy has a similar algebraic structure as the bigraded Toda hierarchy which is a differential-discrete integrable system.
Model for predicting thermal conductivity using transient hot wire method
Kumar, Sublania Harish; Singh K., J.; Somani A., K.
2016-05-01
The use of the hot wire method for estimating the thermal conductivity measurement has recently known a significant increase. However, this method is theoretically not applicable to materials. Thermal conductivity values are necessary whenever a heat transfer problem is to be evaluated.
Eguchi, Yoko; Ishii, Eiji; Hata, Kensuke; Utsumi, Ryutaro
2011-03-01
Two-component signal transduction systems (TCSs), utilized extensively by bacteria and archaea, are involved in the rapid adaptation of the organisms to fluctuating environments. A typical TCS transduces the signal by a phosphorelay between the sensor histidine kinase and its cognate response regulator. Recently, small-sized proteins that link TCSs have been reported and are called "connectors." Their physiological roles, however, have remained elusive. SafA (sensor associating factor A) (formerly B1500), a small (65-amino-acid [65-aa]) membrane protein, is among such connectors and links Escherichia coli TCSs EvgS/EvgA and PhoQ/PhoP. Since the activation of the EvgS/EvgA system induces acid resistance, we examined whether the SafA-activated PhoQ/PhoP system is also involved in the acid resistance induced by EvgS/EvgA. Using a constitutively active evgS1 mutant for the activation of EvgS/EvgA, we found that SafA, PhoQ, and PhoP all contributed to the acid resistance phenotype. Moreover, EvgS/EvgA activation resulted in the accumulation of cellular RpoS in the exponential-phase cells in a SafA-, PhoQ-, and PhoP-dependent manner. This RpoS accumulation was caused by another connector, IraM, expression of which was induced by the activation of the PhoQ/PhoP system, thus preventing RpoS degradation by trapping response regulator RssB. Acid resistance assays demonstrated that IraM also participated in the EvgS/EvgA-induced acid resistance. Therefore, we propose a model of a signal transduction cascade proceeding from EvgS/EvgA to PhoQ/PhoP and then to RssB (connected by SafA and IraM) and discuss its contribution to the acid resistance phenotype.
A second order anti-diffusive Lagrange-remap scheme for two-component flows
Directory of Open Access Journals (Sweden)
Lagoutière Frédéric
2011-11-01
Full Text Available We build a non-dissipative second order algorithm for the approximate resolution of the one-dimensional Euler system of compressible gas dynamics with two components. The considered model was proposed in [1]. The algorithm is based on [8] which deals with a non-dissipative first order resolution in Lagrange-remap formalism. In the present paper we describe, in the same framework, an algorithm that is second order accurate in time and space, and that preserves sharp interfaces. Numerical results reported at the end of the paper are very encouraging, showing the interest of the second order accuracy for genuinely non-linear waves. Nous construisons un algorithme d’ordre deux et non dissipatif pour la résolution approchée des équations d’Euler de la dynamique des gaz compressibles à deux constituants en dimension un. Le modèle que nous considérons est celui à cinq équations proposé et analysé dans [1]. L’algorithme est basé sur [8] qui proposait une résolution approchée à l’ordre un et non dissipative au moyen d’un splitting de type Lagrange-projection. Dans le présent article, nous décrivons, dans le même formalisme, un algorithme d’ordre deux en temps et en espace, qui préserve des interfaces « parfaites » entre les constituants. Les résultats numériques rapportés à la fin de l’article sont très encourageants ; ils montrent clairement les avantages d’un schéma d’ordre deux pour les ondes vraiment non linéaires.
Fractional model for heat conduction in polar bear hairs
Directory of Open Access Journals (Sweden)
Wang Qing-Li
2012-01-01
Full Text Available Time-fractional differential equations can accurately describe heat conduction in fractal media, such as wool fibers, goose down and polar bear hair. The fractional complex transform is used to convert time-fractional heat conduction equations with the modified Riemann-Liouville derivative into ordinary differential equations, and exact solutions can be easily obtained. The solution process is straightforward and concise.
Three-wave interaction in two-component quadratic nonlinear lattices
DEFF Research Database (Denmark)
Konotop, V. V.; Cunha, M. D.; Christiansen, Peter Leth
1999-01-01
We investigate a two-component lattice with a quadratic nonlinearity and find with the multiple scale technique that integrable three-wave interaction takes place between plane wave solutions when these fulfill resonance conditions. We demonstrate that. energy conversion and pulse propagation kno...
A novel two-component system found in Mycobacterium tuberculosis
DEFF Research Database (Denmark)
Morth, J. P.; Gosmann, S.; Nowak, E.;
2005-01-01
We report the identification of a novel two-component system in Mycobacterium tuberculosis. We show that the putative histidine kinase with the genomic locus tag Rv3220c is able to self-phosphorylate in the presence of Mg2+/ATP and subsequently transfer the phosphoryl group to a novel response...
Light Responsive Two-Component Supramolecular Hydrogel: A Sensitive Platform for Humidity Sensors
Samai, Suman
2016-02-15
The supramolecular assembly of anionic azobenzene dicarboxylate and cationic cetyltrimethylammonium bromide (CTAB) formed a stimuli responsive hydrogel with a critical gelation concentration (CGC) of 0.33 wt%. This self-sustainable two-component system was able to repair damage upon light irradiation. Moreover, it was successfully employed in the fabrication of highly sensitive humidity sensors for the first time.
A Two-Component Generalization of Burgers' Equation with Quasi-Periodic Solution
Pan, Hongfei; Xia, Tiecheng; Chen, Dengyuan
2014-10-01
In this paper, we aim for the theta function representation of quasi-periodic solution and related crucial quantities for a two-component generalization of Burgers' equation. Our tools include the theory of algebraic curves, meromorphic functions, Baker-Akhiezer functions and the Dubrovin-type equations for auxiliary divisor. Eith these tools, the explicit representations for above quantities are obtained.
Two-component Brownian coagulation: Monte Carlo simulation and process characterization
Institute of Scientific and Technical Information of China (English)
Haibo Zhao; Chu guang Zheng
2011-01-01
The compositional distribution within aggregates of a given size is essential to the functionality of composite aggregates that are usually enlarged by rapid Brownian coagulation.There is no analytical solution for the process of such two-component systems.Monte Carlo method is an effective numerical approach for two-component coagulation.In this paper,the differentially weighted Monte Carlo method is used to investigate two-component Brownian coagulation,respectively,in the continuum regime,the freemolecular regime and the transition regime.It is found that ( 1 ) for Brownian coagulation in the continuum regime and in the free-molecular regime,the mono-variate compositional distribution,i.e.,the number density distribution function of one component amount (in the form of volume of the component in aggregates) satisfies self-preserving form the same as particle size distribution in mono-component Brownian coagulation; (2) however,for Brownian coagulation in the transition regime the mono-variate compositional distribution cannot reach self-similarity; and (3) the bivariate compositional distribution,i.e.,the combined number density distribution function of two component amounts in the three regimes satisfies a semi self-preserving form.Moreover,other new features inherent to aggregative mixing are also demonstrated; e.g.,the degree of mixing between components,which is largely controlled by the initial compositional mass fraction,improves as aggregate size increases.
Transport of a two-component mixture in one-dimensional channels
Borman, VD; Tronin, VN; Tronin, [No Value; Troyan, [No Value
2004-01-01
The transport of a two-component gas mixture in subnanometer channels is investigated theoretically for an arbitrary filling of channels. Special attention is paid to consistent inclusion of density effects, which are associated both with the interaction and with a finite size of particles. The anal
The Integrability of New Two-Component KdV Equation
Directory of Open Access Journals (Sweden)
Ziemowit Popowicz
2010-02-01
Full Text Available We consider the bi-Hamiltonian representation of the two-component coupled KdV equations discovered by Drinfel'd and Sokolov and rediscovered by Sakovich and Foursov. Connection of this equation with the supersymmetric Kadomtsev-Petviashvilli-Radul-Manin hierarchy is presented. For this new supersymmetric equation the Lax representation and odd Hamiltonian structure is given.
The Qualitative Analysis of a Solution of a Series Maintenance System with Two Components
Institute of Scientific and Technical Information of China (English)
GUOWei-hua; YANGMing-zeng
2003-01-01
In this paper, firstly we study the series maintenance system with two components, obtain its exsistence and uniqueness of a dynamic state nonnegative solution by strongly continuous semigroups of operators theory. Then we prove that 0 is the eigenvalue of the system's host operators, and finally we study the eigenvector of the eigenvalue 0.
A novel two-component system involved in secretion stress response in Streptomyces lividans.
Directory of Open Access Journals (Sweden)
Sonia Gullón
Full Text Available BACKGROUND: Misfolded proteins accumulating outside the bacterial cytoplasmic membrane can interfere with the secretory machinery, hence the existence of quality factors to eliminate these misfolded proteins is of capital importance in bacteria that are efficient producers of secretory proteins. These bacteria normally use a specific two-component system to respond to the stress produced by the accumulation of the misfolded proteins, by activating the expression of HtrA-like proteases to specifically eliminate the incorrectly folded proteins. METHODOLOGY/PRINCIPAL FINDINGS: Overproduction of alpha-amylase in S. lividans causing secretion stress permitted the identification of a two-component system (SCO4156-SCO4155 that regulates three HtrA-like proteases which appear to be involved in secretion stress response. Mutants in each of the genes forming part of the two-genes operon that encodes the sensor and regulator protein components accumulated misfolded proteins outside the cell, strongly suggesting the involvement of this two-component system in the S. lividans secretion stress response. CONCLUSIONS/SIGNIFICANCE: To our knowledge this is the first time that a specific secretion stress response two-component system is found to control the expression of three HtrA-like protease genes in S. lividans, a bacterium that has been repeatedly used as a host for the synthesis of homologous and heterologous secretory proteins of industrial application.
The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis
DEFF Research Database (Denmark)
Bisicchia, Paola; Noone, David; Lioliou, Efthimia
2007-01-01
Adaptation of bacteria to the prevailing environmental and nutritional conditions is often mediated by two-component signal transduction systems (TCS). The Bacillus subtilis YycFG TCS has attracted special attention as it is essential for viability and its regulon is poorly defined. Here we show...
Global dissipative solutions for the two-component Camassa-Holm shallow water system
Directory of Open Access Journals (Sweden)
Yujuan Wang
2015-01-01
Full Text Available This article presents a continuous semigroup of globally defined weak dissipative solutions for the two-component Camassa-Holm system. Such solutions are established by using a new approach based on characteristics a set of new variables overcoming the difficulties inherent in multi-component systems.
Phase separation and dynamics of two-component Bose-Einstein condensates
DEFF Research Database (Denmark)
Lee, Kean Loon; Jørgensen, Nils Byg; Liu, I-Kang;
2016-01-01
The miscibility of two interacting quantum systems is an important testing ground for the understanding of complex quantum systems. Two-component Bose-Einstein condensates enable the investigation of this scenario in a particularly well controlled setting. In a homogeneous system, the transition...
Phase of Two-Component Bose-Einstein Condensates with a Coupling Drive
Institute of Scientific and Technical Information of China (English)
YU Zhao-Xian; JIN Shuo; JIAO Zhi-Yong; WANG Ji-Suo
2007-01-01
By using the invariant theory, we study the phases of two-component Bose-Einstein condensates with a coupling drive under the case that the strength of the interatomic interaction in each condensate equals the interspecies interaction. The dynamical and geometric phases are presented respectively. The Aharonov-Anandan phase is also obtained under the cyclical evolution.
Geometric Integrability of Two-Component Camassa-Holm and Hunter-Saxton Systems
Institute of Scientific and Technical Information of China (English)
SONG Juu-Feng; QU Chang-Zheng
2011-01-01
It is shown that the two-component Camassa-Holm and Hunter-Saxton systems are geometrically integrable, namely they describe pseudo-spherical surfaces. As a consequence, their infinite number o, conservation laws are directly constructed. In addition, a class of nonlocal symmetries depending on the pseudo-potentials are obtained.
Transport of a two-component mixture in one-dimensional channels
Borman, VD; Tronin, VN; Tronin, [No Value; Troyan, [No Value
2004-01-01
The transport of a two-component gas mixture in subnanometer channels is investigated theoretically for an arbitrary filling of channels. Special attention is paid to consistent inclusion of density effects, which are associated both with the interaction and with a finite size of particles. The
Institute of Scientific and Technical Information of China (English)
潘和平; 王家映; 樊政军; 马勇; 柳建华; 李明强
2001-01-01
Shaly sands reservoir is one of the most distributive types of the oil(gas)-bearing reservoirs discovered in China, and low resistivity oil(gas)-bearing reservoirs are mostly shaly sands reservoirs. Therefore, shaly sands reservoir conductive model is the key to evaluate low resistivity oil(gas)-bearing reservoirs using logging information. Some defects were found when we studied the clay distribution type conductive model, dual-water conductive model, conductive rock matrix model, etc. Some models could not distinguish the conductive path and nature of microporosity water and clay water and some models did not consider the clay distribution type and the mount of clay volume. So, we utilize the merits,overcome the defects of the above models, and put forward a new shaly sands conductive model-dual water clay matrix conductive model (DWCMCM) in which dual water is the free water and the microporosity water in shaly sands and the clay matrix(wet clay) is the clay grain containing water. DWCMCM is presented here, the advantages of which can tell the nature and conductive path from different water (microporosity water and freewater), in consid-eration of the clay distribution type and the mount of clay volume in shaly sands. So, the results of logging interpretation in the oil(gas)-bearing reservoirs in the north of Tarim Basin area, China with DWCMCM are better than those interpreted by the above models.
Energy Technology Data Exchange (ETDEWEB)
Mason, Peter [Laboratoire de Physique Statistique, Ecole Normale Superieure, UPMC Paris 06, Universite Paris Diderot, CNRS, 24 rue Lhomond, F-75005 Paris (France); Institut Jean Le Rond D' Alembert, UMR 7190 CNRS-UPMC, 4 place Jussieu, F-75005 Paris (France); Aftalion, Amandine [CNRS and Universite Versailles-Saint-Quentin-en-Yvelines, Laboratoire de Mathematiques de Versailles, CNRS UMR 8100, 45 avenue des Etats-Unis, F-78035 Versailles Cedex (France)
2011-09-15
We classify the ground states and topological defects of a rotating two-component condensate when varying several parameters: the intracomponent coupling strengths, the intercomponent coupling strength, and the particle numbers. No restriction is placed on the masses or trapping frequencies of the individual components. We present numerical phase diagrams which show the boundaries between the regions of coexistence, spatial separation, and symmetry breaking. Defects such as triangular coreless vortex lattices, square coreless vortex lattices, and giant skyrmions are classified. Various aspects of the phase diagrams are analytically justified thanks to a nonlinear {sigma} model that describes the condensate in terms of the total density and a pseudo-spin representation.
A SPICE model for a phase-change memory cell based on the analytical conductivity model
Yiqun, Wei; Xinnan, Lin; Yuchao, Jia; Xiaole, Cui; Jin, He; Xing, Zhang
2012-11-01
By way of periphery circuit design of the phase-change memory, it is necessary to present an accurate compact model of a phase-change memory cell for the circuit simulation. Compared with the present model, the model presented in this work includes an analytical conductivity model, which is deduced by means of the carrier transport theory instead of the fitting model based on the measurement. In addition, this model includes an analytical temperature model based on the 1D heat-transfer equation and the phase-transition dynamic model based on the JMA equation to simulate the phase-change process. The above models for phase-change memory are integrated by using Verilog-A language, and results show that this model is able to simulate the I-V characteristics and the programming characteristics accurately.
Tan, Cheng; Liang, Zhi-Shan
2016-03-01
In this paper, based on the fact that the inductors and capacitors are of fractional order in nature, the four-order mathematical model of the fractional order quadratic Boost converter in type I and type II discontinuous conduction mode (DCM) — DCM is established by using fractional calculus theory. Direct current (DC) analysis is conducted by using the DC equivalent model and the transfer functions are derived from the corresponding alternating current (AC) equivalent model. The DCM-DCM regions of type I and type II are obtained and the relations between the regions and the orders are found. The influence of the orders on the performance of the quadratic Boost converter in DCM-DCM is verified by numerical and circuit simulations. Simulation results demonstrate the correctness of the fractional order model and the efficiency of the proposed theoretical analysis.
Mesophyll conductance and reaction-diffusion models for CO
Berghuijs, Herman N.C.; Yin, Xinyou; Tri Ho, Q.; Driever, Steven M.; Retta, Moges A.; Nicolaï, Bart M.; Struik, Paul C.
2016-01-01
One way to increase potential crop yield could be increasing mesophyll conductance g_{m}. This variable determines the difference between the CO_{2} partial pressure in the intercellular air spaces (C_{i}) and that near Rubisco (C_{c}). Various methods can determin
Modeling the Conductivity of a Subnanosecond Breakdown Gas Switch
Chen, Jinhui; Scott Tyo, J.; Jerald Buchenauer, C.
We present two different modeling methods for understanding subnanosecond breakdown processes in gas plasma switches. The first method uses a finite element time domain method in order to understand experimental measurements of the remote electromagnetic (EM) fields. This method only models the EM fields and is good for analysis, but lacks a predictive capability for the full nonlinear plasma system. The second modeling method uses a PIC code, and is fully self consistent. We make comparisons with experimental measurements and conclude that the PIC model may provide a good understanding of the subnanosecond breakdown phenomena.
Ionospheric conductance distribution and MHD wave structure: observation and model
Directory of Open Access Journals (Sweden)
F. Budnik
Full Text Available The ionosphere influences magnetohydrodynamic waves in the magnetosphere by damping because of Joule heating and by varying the wave structure itself. There are different eigenvalues and eigensolutions of the three dimensional toroidal wave equation if the height integrated Pedersen conductivity exceeds a critical value, namely the wave conductance of the magnetosphere. As a result a jump in frequency can be observed in ULF pulsation records. This effect mainly occurs in regions with gradients in the Pedersen conductances, as in the auroral oval or the dawn and dusk areas. A pulsation event recorded by the geostationary GOES-6 satellite is presented. We explain the observed change in frequency as a change in the wave structure while crossing the terminator. Furthermore, selected results of numerical simulations in a dipole magnetosphere with realistic ionospheric conditions are discussed. These are in good agreement with the observational data.
Key words. Ionosphere · (Ionosphere · magnetosphere interactions · Magnetospheric physics · Magnetosphere · ionosphere interactions · MHD waves and instabilities.
Geotail observations of temperature anisotropy of the two-component protons in the dusk plasma sheet
Directory of Open Access Journals (Sweden)
M. N. Nishino
2007-03-01
Full Text Available In search for clues towards the understanding of the cold plasma sheet formation under northward IMF, we study the temperature anisotropy of the two-component protons in the plasma sheet near the dusk low-latitude boundary observed by the Geotail spacecraft. The two-component protons result from mixing of the cold component from the solar wind and the hot component of the magnetospheric origin, and may be the most eloquent evidence for the transport process across the magnetopause. The cold component occasionally has a strong anisotropy in the dusk flank, and the sense of the anisotropy depends on the observed locations: the parallel temperature is enhanced in the tail flank while the perpendicular temperature is enhanced on the dayside. The hot component is nearly isotropic in the tail while the perpendicular temperature is enhanced on the dayside. We discuss possible mechanism that can lead to the observed temperature anisotropies.
Peng, Daoling; Weigend, Florian; Reiher, Markus
2013-01-01
We present an efficient algorithm for one- and two-component relativistic exact-decoupling calculations. The spin-orbit coupling was taken into account for the evaluation of relativistically transformed Hamiltonian. The relativistic decoupling transformation has to be evaluated with primitive functions so that the construction of the relativistic one-electron Hamiltonian becomes the bottleneck of the whole calculation for large molecules. We apply our recently developed local DLU scheme [J. Chem. Phys. 136 (2012) 244108] to accelerate this step. With our new implementation two-component relativistic density functional calculations can be performed invoking the resolution-of-identity density-fitting approximation and (Abelian as well as non-Abelian) point group symmetries to accelerate both the exact-decoupling and the two-electron part. The capability of our implementation is illustrated at the example of silver clusters with up to 309 atoms, for which the cohesive energy is calculated and extrapolated to the...
Two-component Fermi-liquid theory - Equilibrium properties of liquid metallic hydrogen
Oliva, J.; Ashcroft, N. W.
1981-01-01
It is reported that the transition of condensed hydrogen from an insulating molecular crystal phase to a metallic liquid phase, at zero temperature and high pressure, appears possible. Liquid metallic hydrogen (LMH), comprising interpenetrating proton and electron fluids, would constitute a two-component Fermi liquid with both a very high component-mass ratio and long-range, species-dependent bare interactions. The low-temperature equilibrium properties of LMH are examined by means of a generalization to the case of two components of the phenomenological Landau Fermi-liquid theory, and the low-temperature specific heat, compressibility, thermal expansion coefficient and spin susceptibility are given. It is found that the specific heat and the thermal expansion coefficient are vastly greater in the liquid than in the corresponding solid, due to the presence of proton quasiparticle excitations in the liquid.
Use of two-component signal transduction systems in the construction of synthetic genetic networks.
Ninfa, Alexander J
2010-04-01
Two-component signal transduction systems are a common type of signaling system in prokaryotes; the typical cell has dozens of systems regulating aspects of physiology and controlling responses to environmental conditions. In this review, I consider how these systems may be useful for engineering novel cell functions. Examples of successful incorporation of two-component systems into engineered systems are noted, and features of the systems that favor or hinder potential future use of these signaling systems for synthetic biology applications are discussed. The focus will be on the engineering of novel couplings of sensory functions to signaling outputs. Recent successes in this area are noted, such as the development of light-sensitive transmitter proteins and chemotactic receptors responsive to nitrate. Copyright 2010 Elsevier Ltd. All rights reserved.
Lou, Qiang; Qi, Yijun; Ma, Yuanfang; Qu, Di
2014-01-01
Staphylococcus epidermidis, which is a causative pathogen of nosocomial infection, expresses its virulent traits such as biofilm and autolysis regulated by two-component signal transduction system SaeRS. In this study, we performed a proteomic analysis of differences in expression between the S. epidermidis 1457 wild-type and saeRS mutant to identify candidates regulated by saeRS using two-dimensional gel electrophoresis (2-DE) combined with matrix-assisted laser desorption/lonization mass spectrometry (MALDI-TOF-MS). Of 55 identified proteins that significantly differed in expression between the two strains, 15 were upregulated and 40 were downregulated. The downregulated proteins included enzymes related to glycolysis and TCA cycle, suggesting that glucose is not properly utilized in S. epidermidis when saeRS was deleted. The study will be helpful for treatment of S. epidermidis infection from the viewpoint of metabolic modulation dependent on two-component signal transduction system SaeRS.
Atomic Tunneling Effect in Two-Component Bose-Einstein Condensates with a Coupling Drive
Institute of Scientific and Technical Information of China (English)
JIAOZhi-Yong; YUZhao-Xian; YANGXin-Jian
2004-01-01
In this paper, we have studied the atomic population difference and the atomic tunneling current of two-component Bose-Einstein condensates with a coupling drive. It is found that when the two-component Bose Einstein condensates are initially in the coherent states, the atomic population difference may exhibit the step structure, in which the numbers of the step increase with the decrease of the Rabi frequency and with the increment of the initial phase difference. The atomic population difference may exhibit collapses, and revivals, in which their periods are affected dramatically by the Rabi frequency and the initial phase difference. The atomic tunneling current may exhibit damping oscillation behaviors, and exist the step structure for the time range of 10-10 ～ 10-9 second.
Two-component Fermi-liquid theory - Equilibrium properties of liquid metallic hydrogen
Oliva, J.; Ashcroft, N. W.
1981-01-01
It is reported that the transition of condensed hydrogen from an insulating molecular crystal phase to a metallic liquid phase, at zero temperature and high pressure, appears possible. Liquid metallic hydrogen (LMH), comprising interpenetrating proton and electron fluids, would constitute a two-component Fermi liquid with both a very high component-mass ratio and long-range, species-dependent bare interactions. The low-temperature equilibrium properties of LMH are examined by means of a generalization to the case of two components of the phenomenological Landau Fermi-liquid theory, and the low-temperature specific heat, compressibility, thermal expansion coefficient and spin susceptibility are given. It is found that the specific heat and the thermal expansion coefficient are vastly greater in the liquid than in the corresponding solid, due to the presence of proton quasiparticle excitations in the liquid.
Engineering bacterial two-component system PmrA/PmrB to sense lanthanide ions.
Liang, Haihua; Deng, Xin; Bosscher, Mike; Ji, Quanjiang; Jensen, Mark P; He, Chuan
2013-02-13
The Salmonella PmrA/PmrB two-component system uses an iron(III)-binding motif on the cell surface to sense the environmental or host ferric level and regulate PmrA-controlled gene expression. We replaced the iron(III)-binding motif with a lanthanide-binding peptide sequence that is known to selectively recognize trivalent lanthanide ions. The newly engineered two-component system (PmrA/PmrB) can effectively sense lanthanide ion and regulate gene expression in E. coli . This work not only provides the first known lanthanide-based sensing and response in live cells but also demonstrates that the PmrA/PmrB system is a suitable template for future synthetic biology efforts to construct bacteria that can sense and respond to other metal ions in remediation or sequestration.
Energy Technology Data Exchange (ETDEWEB)
Xu, Fei [Key Laboratory of Fiber Optic Sensing Technology and Information Processing, Ministry of Education, Wuhan University of Technology, Wuhan 430070 (China); Huang, Jiahao, E-mail: hjiahao@mail2.sysu.edu.cn [TianQin Research Center & School of Physics and Astronomy, Sun Yat-Sen University, SYSU Zhuhai Campus, Zhuhai 519082 (China); Liu, Quan [Key Laboratory of Fiber Optic Sensing Technology and Information Processing, Ministry of Education, Wuhan University of Technology, Wuhan 430070 (China)
2017-03-03
Highlights: • A scheme for detecting magnetic field gradients via a double-well two-component Bose–Einstein condensate interferometer. • The magnetic field gradient can be extracted by either the spin population or the external state. • Our proposal is potentially sensitive to weak magnetic field inhomogeneity due to its small sensor size. - Abstract: We have proposed a scheme to detect magnetic field gradients via an interferometer based on a double-well two-component Bose–Einstein condensate (BEC). Utilizing a sequence of quantum control operations on both external and internal degree of the BEC, one can extract the magnetic field gradients by measuring either the population in one component or the fidelity between the final external state and the initial ground state. Our scheme can be implemented by current experimental techniques of manipulating ultracold atoms.
In vivo study of the two-component signaling network in Escherichia coli
Sommer, Erik
2012-01-01
Microorganisms commonly use ‘two-component’ signaling systems for sensing environmental conditions, with members being present in nearly all bacterial and archaeal genomes in different numbers. Prototypical two-component systems are comprised of a sensory histidine kinase and a response regulator protein that is phosphorylated by the kinase. The regulator typically acts as a transcription factor regulating gene expression. Due to their prevalence in microorganisms, a basic understanding of th...
Directory of Open Access Journals (Sweden)
Christian H Bell
2010-02-01
Full Text Available Two-component signal transduction pathways comprising histidine protein kinases (HPKs and their response regulators (RRs are widely used to control bacterial responses to environmental challenges. Some bacteria have over 150 different two-component pathways, and the specificity of the phosphotransfer reactions within these systems is tightly controlled to prevent unwanted crosstalk. One of the best understood two-component signalling pathways is the chemotaxis pathway. Here, we present the 1.40 A crystal structure of the histidine-containing phosphotransfer domain of the chemotaxis HPK, CheA(3, in complex with its cognate RR, CheY(6. A methionine finger on CheY(6 that nestles in a hydrophobic pocket in CheA(3 was shown to be important for the interaction and was found to only occur in the cognate RRs of CheA(3, CheY(6, and CheB(2. Site-directed mutagenesis of this methionine in combination with two adjacent residues abolished binding, as shown by surface plasmon resonance studies, and phosphotransfer from CheA(3-P to CheY(6. Introduction of this methionine and an adjacent alanine residue into a range of noncognate CheYs, dramatically changed their specificity, allowing protein interaction and rapid phosphotransfer from CheA(3-P. The structure presented here has allowed us to identify specificity determinants for the CheA-CheY interaction and subsequently to successfully reengineer phosphotransfer signalling. In summary, our results provide valuable insight into how cells mediate specificity in one of the most abundant signalling pathways in biology, two-component signal transduction.
General aspects of two-component regulatory circuits in bacteria: Domains, signals and roles.
Padilla-Vaca, Felipe; Mondragón-Jaimes, Verónica; Franco, Bernardo
2016-08-09
All living organisms are subject to changing environments, which must be sensed in order to respond swiftly and efficiently. Two-component systems (TCS) are signal transduction regulatory circuits based typically on a membrane bound sensor kinase and a cytoplasmic response regulator, that is activated through a histidine to aspartate phosphorelay reactions. Activated response regulator acts usually as a transcription factor. The best known examples were identified in bacteria, but they are also found in fungi, algae and plants. Thus far, they are not found in mammals. Regulatory circuits coupled to two-component systems exhibit a myriad of responses to environmental stimuli such as: redox potential, pH, specific metabolites, pressure, light and more recently to specific antimicrobial peptides that activate a sensor kinase responsible for expressing virulence factors through the active response regulator. In this review we explore general aspects on two-component systems that ultimately can play a role on virulence regulation, also the intriguing domain properties of the sensor kinases that can be a potential target for antimicrobial compounds. Only a handful of sensor kinases are extensively characterized, the vast majority belong to what we call 'the dark matter of bacterial signal transduction' since no known signal, structure and biochemical properties are available. Regulatory circuits from vertebrate pathogenic organisms can explain virulence in terms of either response to environmental factors or specific niche occupancy. Hopefully, knowledge on these signal transduction systems can lead to identify novel molecules that target two-component systems, since the increase of drug resistant microorganisms is worrisome.
Institute of Scientific and Technical Information of China (English)
Zhang Xiao-Fei; Zhang Pei; He Wan-Quan; Liu Xun-Xu
2011-01-01
By using a unified theory of the formation of various types of vector-solitons in two-component Bose-Einstein condensates with tunable interactions, we obtain a family of exact vector-soliton solutions for the coupled nonlinear Schr(o)dinger equations. Moreover, the Bogoliubov equation shows that there exists stable dark soliton in specific situations. Our results open up new ways in considerable experimental interest for the quantum control of multi-component Bose-Einstein condensates.
Bloch Oscillations of Two-Component Bose-Einstein Condensates in Optical Lattices
Institute of Scientific and Technical Information of China (English)
GU Huai-Qiang; WANG Zhi-Cheng; JIN Kang; TAN Lei
2006-01-01
@@ We study the Bloch oscillations of two-component Bose-Einstein condensates trapped in spin-dependent optical lattices. The influence of the intercomponent atom interaction on the system is discussed in detail Accelerated breakdown of the Bloch oscillations and revival phenomena are found respectively for the repulsive and attractive case. For both the cases, the system will finally be set in a quantum self-trapping state due to dynamical instability.
Different electronic charges in two-component superconductor by coherent state
Energy Technology Data Exchange (ETDEWEB)
Shi, Xuguang, E-mail: shixg@bjfu.edu.cn
2015-07-17
Recently, the different electronic charges, which are related to the different coupling constants with magnetic field, in the two-component superconductor have been studied in the frame of Ginzburg–Landau theory. In order to study the electronic charges in detail we suggest the wave function in the two-component superconductor to be in the coherent state. We find the different electronic charges exist not only in the coherent state but also in the incoherent state. But the ratio of the different charges in the coherent state is different from the ratio in the incoherence. The expressions of the coupling constants are given directly based on the coherence effects. We also discuss the winding number in such a system. - Highlights: • Suggest the wave function in two-component superconductor is coherent. • Interpret the existence of different electric charges by the coherent states. • Derive a new expression for the supercurrent. • Reveal the relation between different electric charges and winding number.
Indian Academy of Sciences (India)
K V Srividhya; S Krishnaswamy
2007-08-01
Bacteriophage induced lysis of host bacterial cell is mediated by a two component cell lysis cassette comprised of holin and lysozyme. Prophages are integrated forms of bacteriophages in bacterial genomes providing a repertoire for bacterial evolution. Analysis using the prophage database (http://bicmku.in:8082) constructed by us showed 47 prophages were associated with putative two component cell lysis genes. These proteins cluster into four different subgroups. In this process, a putative holin (essd) and endolysin (ybcS), encoded by the defective lambdoid prophage DLP12 was found to be similar to two component cell lysis genes in functional bacteriophages like p21 and P1. The holin essd was found to have a characteristic dual start motif with two transmembrane regions and C-terminal charged residues as in class II holins. Expression of a fusion construct of essd in Escherichia coli showed slow growth. However, under appropriate conditions, this protein could be over expressed and purified for structure function studies. The second component of the cell lysis cassette, ybcS, was found to have an N-terminal SAR (Signal Arrest Release) transmembrane domain. The construct of ybcS has been over expressed in E. coli and the purified protein was functional, exhibiting lytic activity against E. coli and Salmonella typhi cell wall substrate. Such targeted sequence-structure-function characterization of proteins encoded by cryptic prophages will help understand the contribution of prophage proteins to bacterial evolution.
Design of Novel Mixer and Applicator for Two-Component Surgical Adhesives
Go, Kevin; Kim, Yeong; Lee, Andy H.; Staricha, Kelly; Messersmith, Phillip; Glucksberg, Matthew
2015-01-01
Current mixer and applicator devices on the market are not able to properly and efficiently mix two-component surgical adhesives in small volumes necessary to achieve economic viability. Furthermore, in these devices a significant amount of adhesive is wasted during the application process, as material within the dead space of the mixing chamber must be discarded. We have designed and demonstrated a new active mixer and applicator system capable of rapidly and efficiently mixing two components of an adhesive and applying it to the surgical site. Recently, Messersmith et al. have developed a tissue adhesive inspired by the mussel byssus and have shown that it is effective as a surgical sealant, and is especially suited for wet environments such as in fetal surgery. Like some other tissue sealants, this one requires that two components of differing viscosities be thoroughly mixed within a specified and short time period. Through a combination of compression and shear testing, we demonstrated that our device could effectively mix the adhesive developed by Messersmith et al. and improve its shear strength to significantly higher values than what has been reported for vortex mixing. Overall, our mixer and applicator system not only has potential applications in mixing and applying various adhesives in multiple surgical fields but also makes this particular adhesive viable for clinical use. PMID:26421090
Real time propagation of the exact two component time-dependent density functional theory
Goings, Joshua J.; Kasper, Joseph M.; Egidi, Franco; Sun, Shichao; Li, Xiaosong
2016-09-01
We report the development of a real time propagation method for solving the time-dependent relativistic exact two-component density functional theory equations (RT-X2C-TDDFT). The method is fundamentally non-perturbative and may be employed to study nonlinear responses for heavy elements which require a relativistic Hamiltonian. We apply the method to several group 12 atoms as well as heavy-element hydrides, comparing with the extensive theoretical and experimental studies on this system, which demonstrates the correctness of our approach. Because the exact two-component Hamiltonian contains spin-orbit operators, the method is able to describe the non-zero transition moment of otherwise spin-forbidden processes in non-relativistic theory. Furthermore, the two-component approach is more cost effective than the full four-component approach, with similar accuracy. The RT-X2C-TDDFT will be useful in future studies of systems containing heavy elements interacting with strong external fields.
A Simple Model for the Non-Arrhenius Ionic Conductivity in Superionic Glasses
Indoh, Takaki; Aniya, Masaru; インドウ, タカキ; アニヤ, マサル; 犬童, 貴樹; 安仁屋, 勝
2010-01-01
Many superionic conducting glasses follow the Arrhenius type temperature dependence of ionic conductivity. However, in some superionic conductors it has been discovered that the conductivity deviate from the Arrhenius type behavior. In this paper, we present a simple model that describes the non-Arrhenius type ionic conductivity based on the Zwanzig model of diffusion. From the theory, the condition for the appearance of non-Arrhenius type ionic conductivity has been obtained.
Decomposition model for phonon thermal conductivity of a monatomic lattice
Evteev, Alexander V.; Momenzadeh, Leila; Levchenko, Elena V.; Belova, Irina V.; Murch, Graeme E.
2014-12-01
An analytical treatment of decomposition of the phonon thermal conductivity of a crystal with a monatomic unit cell is developed on the basis of a two-stage decay of the heat current autocorrelation function observed in molecular dynamics simulations. It is demonstrated that the contributions from the acoustic short- and long-range phonon modes to the total phonon thermal conductivity can be presented in the form of simple kinetic formulas, consisting of products of the heat capacity and the average relaxation time of the considered phonon modes as well as the square of the average phonon velocity. On the basis of molecular dynamics calculations of the heat current autocorrelation function, this treatment allows for a self-consistent numerical evaluation of the aforementioned variables. In addition, the presented analysis allows, within the Debye approximation, for the identification of the temperature range where classical molecular dynamics simulations can be employed for the prediction of phonon thermal transport properties. As a case example, Cu is considered.
Wei, Katy; Moinat, Maxim; Maarleveld, Timo R; Bruggeman, Frank J
2014-07-29
Signal transduction by prokaryotes almost exclusively relies on two-component systems for sensing and responding to (extracellular) signals. Here, we use stochastic models of two-component systems to better understand the impact of stochasticity on the fidelity and robustness of signal transmission, the outcome of autoregulatory gene expression and the influence of cell growth and division. We report that two-component systems are remarkably robust against copy number fluctuations of the signalling proteins they are composed of, which enhances signal transmission fidelity. Furthermore, we find that due to stochasticity these systems can get locked in an active state for extended time periods when (initially high) signal levels drop to zero. This behaviour can contribute to a bet-hedging adaptation strategy, aiding survival in fluctuating environments. Additionally, autoregulatory gene expression can cause two-component systems to become bistable at realistic parameter values. As a result, two sub-populations of cells can co-exist-active and inactive cells, which contributes to fitness in unpredictable environments. Bistability proved robust with respect to cell growth and division, and is tunable by the growth rate. In conclusion, our results indicate how single cells can cope with the inevitable stochasticity occurring in the activity of their two-component systems. They are robust to disadvantageous fluctuations that scramble signal transduction and they exploit beneficial stochasticity that generates fitness-enhancing heterogeneity across an isogenic population of cells.
Muzamal, Uzma; Gomez, Daniel; Kapadia, Fenika; Golemi-Kotra, Dasantila
2014-01-01
The response to cationic antimicrobial peptides (CAMPs) in Staphylococcus aureus relies on a two-component system (TCS), GraSR, an auxiliary protein GraX and an ATP-binding cassette (ABC) transporter, VraF/G. To understand the signal transduction mechanism by GraSR, we investigated the kinase activity of the cytoplasmic domain of histidine kinase GraS and the interaction with its cognate response regulator GraR. We also investigated interactions among the auxiliary protein GraX, GraS/R and the ATPase protein of the ABC transporter, VraF. We found that GraS lacks autophosphorylation activity, unlike a similar histidine kinase, BceS, of Bacillus subtilis. In addition, the interaction between GraS and GraR is very weak in comparison to the stronger interaction observed between BceS and its conjugated response regulator, BceR, suggesting that CAMP signaling may not flow directly from GraS to GraR. We found that the auxiliary protein GraX interacts with VraF and GraR, and requires the histidine phosphotransfer and dimerization domain of GraS to interact with this protein. Further, VraF requires the GraS region that connects the membrane-bound domain with the cytoplasmic domain of this protein for interaction with GraS. The interactions of GraX with GraS/R and VraF indicate that GraX may serve as a scaffold to bring these proteins in close proximity to GraS, plausibly to facilitate activation of GraS to ultimately transduce the signal to GraR.
Directory of Open Access Journals (Sweden)
Andrea Procaccini
Full Text Available Predictive understanding of the myriads of signal transduction pathways in a cell is an outstanding challenge of systems biology. Such pathways are primarily mediated by specific but transient protein-protein interactions, which are difficult to study experimentally. In this study, we dissect the specificity of protein-protein interactions governing two-component signaling (TCS systems ubiquitously used in bacteria. Exploiting the large number of sequenced bacterial genomes and an operon structure which packages many pairs of interacting TCS proteins together, we developed a computational approach to extract a molecular interaction code capturing the preferences of a small but critical number of directly interacting residue pairs. This code is found to reflect physical interaction mechanisms, with the strongest signal coming from charged amino acids. It is used to predict the specificity of TCS interaction: Our results compare favorably to most available experimental results, including the prediction of 7 (out of 8 known interaction partners of orphan signaling proteins in Caulobacter crescentus. Surveying among the available bacterial genomes, our results suggest 15∼25% of the TCS proteins could participate in out-of-operon "crosstalks". Additionally, we predict clusters of crosstalking candidates, expanding from the anecdotally known examples in model organisms. The tools and results presented here can be used to guide experimental studies towards a system-level understanding of two-component signaling.
Matsumoto, Jin; Masada, Youhei; Asano, Eiji; Shibata, Kazunari
2011-05-01
The nonlinear dynamics of outflows driven by magnetic explosion on the surface of a compact star is investigated through special relativistic magnetohydrodynamic simulations. We adopt, as the initial equilibrium state, a spherical stellar object embedded in hydrostatic plasma which has a density ρ(r) vprop r -α and is threaded by a dipole magnetic field. The injection of magnetic energy at the surface of a compact star breaks the equilibrium and triggers a two-component outflow. At the early evolutionary stage, the magnetic pressure increases rapidly around the stellar surface, initiating a magnetically driven outflow. A strong forward shock driven outflow is then excited. The expansion velocity of the magnetically driven outflow is characterized by the Alfvén velocity on the stellar surface and follows a simple scaling relation v mag vprop v A 1/2. When the initial density profile declines steeply with radius, the strong shock is accelerated self-similarly to relativistic velocity ahead of the magnetically driven component. We find that it evolves according to a self-similar relation Γsh vprop r sh, where Γsh is the Lorentz factor of the plasma measured at the shock surface r sh. A purely hydrodynamic process would be responsible for the acceleration mechanism of the shock driven outflow. Our two-component outflow model, which is the natural outcome of the magnetic explosion, can provide a better understanding of the magnetic active phenomena on various magnetized compact stars.
Origin and evolution of two-component debris discs and an application to the q$^1$ Eridani system
Schüppler, Christian; Löhne, Torsten; Booth, Mark; Kirchschlager, Florian; Wolf, Sebastian
2016-01-01
Many debris discs reveal a two-component structure, with an outer Kuiper-belt analogue and a warm inner component whose origin is still a matter of debate. One possibility is that warm emission stems from an "asteroid belt" closer in to the star. We consider a scenario in which a set of giant planets is formed in an initially extended planetesimal disc. These planets carve a broad gap around their orbits, splitting up the disc into the outer and the inner belts. After the gas dispersal, both belts undergo collisional evolution in a steady-state regime. This scenario is explored with detailed collisional simulations involving realistic physics to describe a long-term collisional depletion of the two-component disc. We find that the inner disc may be able to retain larger amounts of material at older ages than thought before on the basis of simplified analytic models. We show that the proposed scenario is consistent with a suite of thermal emission and scattered light observational data for a bright two-tempera...
Energy Technology Data Exchange (ETDEWEB)
Zhang, Xiao-Fei, E-mail: xfzhang@ntsc.ac.cn [Key Laboratory of Time and Frequency Primary Standards, National Time Service Center, Chinese Academy of Sciences, Xi’an 710600 (China); Du, Zhi-Jing [Key Laboratory of Time and Frequency Primary Standards, National Time Service Center, Chinese Academy of Sciences, Xi’an 710600 (China); Tan, Ren-Bing [Department of Physics, School of Mathematics and Physics, Chongqing University of Science and Technology, Chongqing 401331 (China); Dong, Rui-Fang; Chang, Hong; Zhang, Shou-Gang [Key Laboratory of Time and Frequency Primary Standards, National Time Service Center, Chinese Academy of Sciences, Xi’an 710600 (China)
2014-07-15
We consider a pair of coupled nonlinear Schrödinger equations modeling a rotating two-component Bose–Einstein condensate with tunable interactions and harmonic potential, with emphasis on the structure of vortex states by varying the strength of inter-component interaction, rotational frequency, and the aspect ratio of the harmonic potential. Our results show that the inter-component interaction greatly enhances the effect of rotation. For the case of isotropic harmonic potential and small inter-component interaction, the initial vortex structure remains unchanged. As the ratio of inter- to intra-component interactions increases, each component undergoes a transition from a vortex lattice (vortex line) in an isotropic (anisotropic) harmonic potential to an alternatively arranged stripe pattern, and eventually to the interwoven “serpentine” vortex sheets. Moreover, in the case of anisotropic harmonic potential the system can develop to a rotating droplet structure. -- Highlights: •Different vortex structures are obtained within the full parameter space. •Effects of system parameters on the ground state structure are discussed. •Phase transition between different vortex structures is also examined. •Present one possible way to obtain the rotating droplet structure. •Provide many possibilities to manipulate vortex in two-component BEC.
Lynch, Jonathan B; Sonnenburg, Justin L
2012-08-01
Bacteroides is a dominant genus within the intestinal microbiota of healthy humans. Key adaptations of the Bacteroides to the dynamic intestinal ecosystem include a diverse repertoire of genes involved in sensing and processing numerous diet- and host-derived polysaccharides. One such adaptation is the carbohydrate-sensing hybrid two-component system (HTCS) family of signalling sensors, which has been widely expanded within the Bacteroides. Using Bacteroides thetaiotaomicron as a model, we have created a chimeric HTCS consisting of the well-characterized sensing domain of one HTCS, BT1754, and the regulatory domain of another HTCS, BT0366, to explore the regulatory capabilities of these molecules. We found that the BT0366 regulatory region directly binds to and mediates induction of the adjacent polysaccharide utilization locus (PUL) using whole-genome transcriptional profiling after inducing signalling through our chimeric protein. We also found that BT0366 activation simultaneously leads to repression of distal PULs involved in mucus carbohydrate consumption. These results suggest a novel mechanism by which an HTCS enforces a nutrient hierarchy within the Bacteroides via induction and repression of multiple PULs. Thus, hybrid two-component systems provide a mechanism for prioritizing consumption of carbohydrates through simultaneous binding and regulation of multiple polysaccharide utilization loci. © 2012 Blackwell Publishing Ltd.
DEFF Research Database (Denmark)
Jovanovic, Goran; Sheng, Xia; Ale, Angelique;
2015-01-01
the functional relevance of the dimerization of a non-orthodox or hybrid histidine kinase along which the phosphorelay takes place has been a subject of debate. We use a combination of molecular and genetic approaches, coupled to mathematical and statistical modelling, to demonstrate that the different possible...... intra- and inter-molecular mechanisms of phosphotransfer are formally non-identifiable in Escherichia coli expressing the ArcB non-orthodox histidine kinase used in anoxic redox control. In order to resolve this issue we further analyse the mathematical model in order to identify discriminatory...... in the histidine kinase. This is the first detailed mechanistic analysis of the molecular processes involved in non-orthodox two-component signalling and our results suggest strongly that dimerization facilitates more discriminatory proof-reading of external signals, via these allosteric reactions, prior to them...
Specificity residues determine binding affinity for two-component signal transduction systems.
Willett, Jonathan W; Tiwari, Nitija; Müller, Susanne; Hummels, Katherine R; Houtman, Jon C D; Fuentes, Ernesto J; Kirby, John R
2013-11-05
Two-component systems (TCS) comprise histidine kinases and their cognate response regulators and allow bacteria to sense and respond to a wide variety of signals. Histidine kinases (HKs) phosphorylate and dephosphorylate their cognate response regulators (RRs) in response to stimuli. In general, these reactions appear to be highly specific and require an appropriate association between the HK and RR proteins. The Myxococcus xanthus genome encodes one of the largest repertoires of signaling proteins in bacteria (685 open reading frames [ORFs]), including at least 127 HKs and at least 143 RRs. Of these, 27 are bona fide NtrC-family response regulators, 21 of which are encoded adjacent to their predicted cognate kinases. Using system-wide profiling methods, we determined that the HK-NtrC RR pairs display a kinetic preference during both phosphotransfer and phosphatase functions, thereby defining cognate signaling systems in M. xanthus. Isothermal titration calorimetry measurements indicated that cognate HK-RR pairs interact with dissociation constants (Kd) of approximately 1 µM, while noncognate pairs had no measurable binding. Lastly, a chimera generated between the histidine kinase, CrdS, and HK1190 revealed that residues conferring phosphotransfer and phosphatase specificity dictate binding affinity, thereby establishing discrete protein-protein interactions which prevent cross talk. The data indicate that binding affinity is a critical parameter governing system-wide signaling fidelity for bacterial signal transduction proteins. Using in vitro phosphotransfer and phosphatase profiling assays and isothermal titration calorimetry, we have taken a system-wide approach to demonstrate specificity for a family of two-component signaling proteins in Myxococcus xanthus. Our results demonstrate that previously identified specificity residues dictate binding affinity and that phosphatase specificity follows phosphotransfer specificity for cognate HK-RR pairs. The data
Directory of Open Access Journals (Sweden)
Daniel Rozas
Full Text Available BACKGROUND: Bacterial two-component signal transduction regulatory systems are the major set of signalling proteins frequently mediating responses to changes in the environment. They typically consist of a sensor, a membrane-associated histidine kinase and a cytoplasmic response regulator. The membrane-associated sensor detects the environmental signal or stress, whereas the cytoplasmic regulatory protein controls the cellular response usually by gene transcription modulation. METHODOLOGY/PRINCIPALFINDINGS: The Streptomyces coelicolor two genes operon SCO5784-SCO5785 encodes a two-component system, where SCO5784 encodes a histidine-kinase sensor and SCO5785 encodes a response regulator protein. When the expression level of the regulator gene decreases, the antibiotic synthesis and sporulation is delayed temporarily in addition to some ribosomal genes became up regulated, whereas the propagation of the regulatory gene in high copy number results in the earlier synthesis of antibiotics and sporulation, as well as the down regulation of some ribosomal genes and, moreover, in the overproduction of several extracellular proteins. Therefore, this two-component system in S. coelicolor seems to influence various processes characterised by the transition from primary to secondary metabolism, as determined by proteomic and transcriptomic analyses. CONCLUSIONS/SIGNIFICANCE: Propagation of SCO5785 in multicopy enhances the production of antibiotics as well as secretory proteins. In particular, the increase in the expression level of secretory protein encoding genes, either as an artefactual or real effect of the regulator, could be of potential usefulness when using Streptomyces strains as hosts for homologous or heterologous extracellular protein production.
Analytical solution and meaning of feasible regions in two-component three-way arrays.
Omidikia, Nematollah; Abdollahi, Hamid; Kompany-Zareh, Mohsen; Rajkó, Róbert
2016-10-01
Although many efforts have been directed to the development of approximation methods for determining the extent of feasible regions in two- and three-way data sets; analytical determination (i.e. using only finite-step direct calculation(s) instead of the less exact numerical ones) of feasible regions in three-way arrays has remained unexplored. In this contribution, an analytical solution of trilinear decomposition is introduced which can be considered as a new direct method for the resolution of three-way two-component systems. The proposed analytical calculation method is applied to the full rank three-way data array and arrays with rank overlap (a type of rank deficiency) loadings in a mode. Close inspections of the analytically calculated feasible regions of rank deficient cases help us to make clearer the information gathered from multi-way problems frequently emerged in physics, chemistry, biology, agricultural, environmental and clinical sciences, etc. These examinations can also help to answer, e.g., the following practical question: "Is two-component three-way data with proportional loading in a mode actually a three-way data array?" By the aid of the additional information resulted from the investigated feasible regions of two-component three-way data arrays with proportional profile in a mode, reasons for the inadequacy of the seemingly trilinear data treatment methods published in the literature (e.g., U-PLS/RBL-LD that was used for extraction of quantitative and qualitative information reported by Olivieri et al. (Anal. Chem. 82 (2010) 4510-4519)) could be completely understood.
Design principles in two component systems and his-asp phosphorelays
Salvadó López, Baldiri
2016-01-01
L’objectiu d’aquesta tesi és trobar principis generals que permetin relacionar l’estructura i les propietats funcionals dels circuits moleculars de transducció de senyals two-component systems (TCS) i his-asp phosphorelays (PR). La tesi s’inicia revisant els mètodes usats per a l’estudi de principis de disseny en sistemes moleculars i alguns dels resultats obtinguts fins ara, i discutint la importància de l’estudi dels principis de disseny. A continuació, explorem els proteomes seqüenc...
On the inspection policy of a two-component parallel system with failure interaction
Energy Technology Data Exchange (ETDEWEB)
Zequeira, Romulo I. [ISTIT, Equipe Modelisation et Surete des Systemes, Universite de Technologie de Troyes, 12 Rue Marie Curie, BP 2060, 10010 Troyes Cedex (France)]. E-mail: romulo.zequeira@utt.fr; Berenguer, Christophe [ISTIT, Equipe Modelisation et Surete des Systemes, Universite de Technologie de Troyes, 12 Rue Marie Curie, BP 2060, 10010 Troyes Cedex (France)]. E-mail: christophe.berenguer@utt.fr
2005-04-01
In this paper we study a two-component standby system which can successfully operate upon a demand if at least one component is not failed. We assume that failures can be detected only by periodic inspections. We consider that the failure of one component can modify the (conditional) failure probability of the component still alive with probability p and do not interact with probability 1-p. For that failure interaction scheme we obtain the system reliability function for the case of staggered inspections. We compare staggered and non-staggered inspections through numerical examples considering constant hazard rates.
Optimization and control of two-component radially self-accelerating beams
Energy Technology Data Exchange (ETDEWEB)
Vetter, Christian; Eichelkraut, Toni; Ornigotti, Marco; Szameit, Alexander [Institute of Applied Physics, Abbe Center of Photonics, Friedrich-Schiller-Universität Jena, Albert-Einstein-Str. 15, 07745 Jena (Germany)
2015-11-23
We report on the properties of radially self-accelerating intensity distributions consisting of two components in the angular frequency domain. We show how this subset of solutions, in literature also known as helicon beams, possesses peculiar characteristics that enable a better control over its properties. In this work, we present a step-by-step optimization procedure to achieve the best possible intensity contrast, a distinct rotation rate and long propagation lengths. All points are discussed on a theoretical basis and are experimentally verified.
Modulational instability for a self-attractive two-component Bose-Einstein condensate
Institute of Scientific and Technical Information of China (English)
Li Sheng-Chang; Duan Wen-Shan
2009-01-01
By means of the multiple-scale expansion method, the coupled nonlinear Schr(o)dinger equations without an explicit external potential are obtained in two-dimensional geometry for a self-attractive Bose-Einstein condensate composed of different hyperfine states. The modulational instability of two-component condensate is investigated by using a simple technique. Based on the discussion about two typical cases, the explicit expression of the growth rate for a purely growing modulational instability and the optimum stable conditions are given and analysed analytically. The results show that the modulational instability of this two-dimensional system is quite different from that in a one-dimensional system.
Xu, Fei; Huang, Jiahao; Liu, Quan
2017-03-01
We have proposed a scheme to detect magnetic field gradients via an interferometer based on a double-well two-component Bose-Einstein condensate (BEC). Utilizing a sequence of quantum control operations on both external and internal degree of the BEC, one can extract the magnetic field gradients by measuring either the population in one component or the fidelity between the final external state and the initial ground state. Our scheme can be implemented by current experimental techniques of manipulating ultracold atoms.
Two-component systems and their co-option for eukaryotic signal transduction.
Schaller, G Eric; Shiu, Shin-Han; Armitage, Judith P
2011-05-10
Two-component signaling pathways involve histidine kinases, response regulators, and sometimes histidine-containing phosphotransfer proteins. Prevalent in prokaryotes, these signaling elements have also been co-opted to meet the needs of signal transduction in eukaryotes such as fungi and plants. Here we consider the evolution of such regulatory systems, with a particular emphasis on the roles they play in signaling by the plant hormones cytokinin and ethylene, in phytochrome-mediated perception of light, and as integral components of the circadian clock. Copyright © 2011 Elsevier Ltd. All rights reserved.
Directory of Open Access Journals (Sweden)
Anca Visinescu
2011-04-01
Full Text Available Using the multiple scales method, the interaction between two bright and one dark solitons is studied. Provided that a long wave-short wave resonance condition is satisfied, the two-component Zakharov-Yajima-Oikawa (ZYO completely integrable system is obtained. By using a Madelung fluid description, the one-soliton solutions of the corresponding ZYO system are determined. Furthermore, a discussion on the interaction between one bright and two dark solitons is presented. In particular, this problem is reduced to solve a one-component ZYO system in the resonance conditions.
Two-component colour dipole emission in the central region of onium-onium scattering
Peschanski, R
1995-01-01
The initial-state radiation of soft colour dipoles produced in the central region of onium-onium scattering via single QCD Pomeron exchange (BFKL) is calculated in the framework of Mueller's dipole approach. The resulting dipole production has a two-component structure. One is constant with energy while the other grows and possesses a power-law tail at appreciably large transverse distances from the collision axis. It may be related to the growth of the gluon distribution at small Bjorken-x.
Dynamics of bubbles in a two-component Bose-Einstein condensate
Sasaki, Kazuki; Suzuki, Naoya; Saito, Hiroki
2011-03-01
The dynamics of a phase-separated two-component Bose-Einstein condensate are investigated, in which a bubble of one component moves through the other component. Numerical simulations of the Gross-Pitaevskii equation reveal a variety of dynamics associated with the creation of quantized vortices. In two dimensions, a circular bubble deforms into an ellipse and splits into fragments with vortices, which undergo the Magnus effect. The Bénard-von Kármán vortex street is also generated. In three dimensions, a spherical bubble deforms into toruses with vortex rings. When two rings are formed, they exhibit leapfrogging dynamics.
The Two-Component Virial Theorem and the Physical Properties of Stellar Systems.
Dantas; Ribeiro; Capelato; de Carvalho RR
2000-01-01
Motivated by present indirect evidence that galaxies are surrounded by dark matter halos, we investigate whether their physical properties can be described by a formulation of the virial theorem that explicitly takes into account the gravitational potential term representing the interaction of the dark halo with the baryonic or luminous component. Our analysis shows that the application of such a "two-component virial theorem" not only accounts for the scaling relations displayed by, in particular, elliptical galaxies, but also for the observed properties of all virialized stellar systems, ranging from globular clusters to galaxy clusters.
Anisotropic pair superfluidity of trapped two-component Bose gases in an optical lattice
Li, Yongqiang; He, Liang; Hofstetter, Walter
2013-09-01
We theoretically investigate the pair-superfluid phase of two-component ultracold gases with attractive inter-species interactions in an optical lattice. We establish the phase diagram for filling n = 1 at zero and finite temperatures, by applying bosonic dynamical mean-field theory, and observe stable pair-superfluid and charge-density wave quantum phases for asymmetric hopping of the two species. While the pair superfluid is found to be robust in the presence of a harmonic trap, we observe that it is destroyed already by a small population imbalance of the two species.
Two-component Fermions in Optical Lattice with Spatially Alternating Interactions
Hoang, Anh-Tuan; Nguyen, Thi-Hai-Yen; Tran, Thi-Thu-Trang; Le, Duc-Anh
2016-10-01
We investigate two-component mass-imbalanced fermions in an optical lattice with spatially modulated interactions by using two-site dynamical mean field theory. At half-filling and zero temperature, the phase diagram of the system is analytically obtained, in which the metallic region is reduced with increasing the mass imbalance. The ground-state properties of the fermionic system are discussed from the behaviors of both the spin-dependent quasi-particle weight at the Fermi level and the double occupancy for each sublattice as functions of the local interaction strengths for various values of the mass imbalance.
DEFF Research Database (Denmark)
Bellotti, Filipe Furlan; Salami Dehkharghani, Amin; Zinner, Nikolaj Thomas
2017-01-01
We investigate one-dimensional harmonically trapped two-component systems for repulsive interaction strengths ranging from the non-interacting to the strongly interacting regime for Fermi-Fermi mixtures. A new and powerful mapping between the interaction strength parameters from a continuous......) and exact diagonalization) and analytically. Since DMRG results do not converge as the interaction strength is increased, analytical solutions are used as a benchmark to identify the point where these calculations become unstable. We use the proposed mapping to set a quantitative limit on the interaction...
CSIR Research Space (South Africa)
Grobler, Inus
2013-09-01
Full Text Available High density high switching frequency power converter conducted EMC had been analysed, modelling the noise source and noise path, while providing accurate conducted EMC noise limits comparable to accredited noise measurements up to 100 MHz...
Transient heat conduction in a pebble fuel applying fractional model
Energy Technology Data Exchange (ETDEWEB)
Gomez A, R.; Espinosa P, G. [Universidad Autonoma Metropolitana, Unidad Iztapalapa, Area de Ingenieria en Recursos Energeticos, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Mexico D. F. (Mexico)], e-mail: gepe@xanum.uam.mx
2009-10-15
In this paper we presents the equation of thermal diffusion of temporary-fractional order in the one-dimensional space in spherical coordinates, with the objective to analyze the heat transference between the fuel and coolant in a fuel element of a Pebble Bed Modular Reactor. The pebble fuel is the heterogeneous system made by microsphere constitutes by U O, pyrolytic carbon and silicon carbide mixed with graphite. To describe the heat transfer phenomena in the pebble fuel we applied a constitutive law fractional (Non-Fourier) in order to analyze the behaviour transient of the temperature distribution in the pebble fuel with anomalous thermal diffusion effects a numerical model is developed. (Author)
Deng, Dong-dong; Gong, Ying-lan; Shou, Guo-fa; Jiao, Pei-feng; Zhang, Heng-gui; Ye, Xue-song; Xia, Ling
2012-01-01
In order to better understand biatrial conduction, investigate various conduction pathways, and compare the differences between isotropic and anisotropic conductions in human atria, we present a simulation study of biatrial conduction with known/assumed conduction pathways using a recently developed human atrial model. In addition to known pathways: (1) Bachmann’s bundle (BB), (2) limbus of fossa ovalis (LFO), and (3) coronary sinus (CS), we also hypothesize that there exist two fast conducti...
National Research Council Canada - National Science Library
Skerker, Jeffrey M; Prasol, Melanie S; Perchuk, Barrett S; Biondi, Emanuele G; Laub, Michael T
2005-01-01
Two-component signal transduction systems, comprised of histidine kinases and their response regulator substrates, are the predominant means by which bacteria sense and respond to extracellular signals...
Arabidopsis ethylene-response gene ETR1: Similiarity of product to two-component regulators
Energy Technology Data Exchange (ETDEWEB)
Chang, C.; Kwok, S.F.; Bleecker, A.B.; Meyerowitz, E.M. (California Institute of Technology, Pasadena, CA (United States))
1993-10-22
Ethylene behaves as a hormone in plants, regulating such aspects of growth and development as fruit ripening, flower senescence, and abscission. Ethylene insensitivity is conferred by dominant mutations in the ETR1 gene early in the ethylene signal transduction pathway of Arabidopsis thaliana. The ETR1 gene was cloned by the method of chromosome walking. Each of the four known etr1 mutant alleles contains a missense mutation near the amino terminus of the predicted protein. Although the sequence of the amino-terminal half of the deduced ETR1 protein appears to be novel, the carboxyl-terminal half is similar in sequence to both components of the prokaryotic family of signal transducers known as the two-component systems. Thus, an early step in ethylene signal transduction in plants may involve transfer of phosphate as in prokaryotic two-component systems. The dominant etr1-1 mutant gene conferred ethylene insensitivity to wild-type Arabidopsis plants when introduced by transformation.
Directory of Open Access Journals (Sweden)
Qiang Lou
2014-01-01
Full Text Available Staphylococcus epidermidis, which is a causative pathogen of nosocomial infection, expresses its virulent traits such as biofilm and autolysis regulated by two-component signal transduction system SaeRS. In this study, we performed a proteomic analysis of differences in expression between the S. epidermidis 1457 wild-type and saeRS mutant to identify candidates regulated by saeRS using two-dimensional gel electrophoresis (2-DE combined with matrix-assisted laser desorption/lonization mass spectrometry (MALDI-TOF-MS. Of 55 identified proteins that significantly differed in expression between the two strains, 15 were upregulated and 40 were downregulated. The downregulated proteins included enzymes related to glycolysis and TCA cycle, suggesting that glucose is not properly utilized in S. epidermidis when saeRS was deleted. The study will be helpful for treatment of S. epidermidis infection from the viewpoint of metabolic modulation dependent on two-component signal transduction system SaeRS.
Patient Autonomy for the Management of Chronic Conditions: A Two-Component Re-conceptualization
Naik, Aanand D.; Dyer, Carmel B.; Kunik, Mark E.; McCullough, Laurence B.
2010-01-01
The clinical application of the concept of patient autonomy has centered on the ability to deliberate and make treatment decisions (decisional autonomy) to the virtual exclusion of the capacity to execute the treatment plan (executive autonomy). However, the one-component concept of autonomy is problematic in the context of multiple chronic conditions. Adherence to complex treatments commonly breaks down when patients have functional, educational, and cognitive barriers that impair their capacity to plan, sequence, and carry out tasks associated with chronic care. The purpose of this article is to call for a two-component re-conceptualization of autonomy and to argue that the clinical assessment of capacity for patients with chronic conditions should be expanded to include both autonomous decision making and autonomous execution of the agreed-upon treatment plan. We explain how the concept of autonomy should be expanded to include both decisional and executive autonomy, describe the biopsychosocial correlates of the two-component concept of autonomy, and recommend diagnostic and treatment strategies to support patients with deficits in executive autonomy. PMID:19180389
Negative control in two-component signal transduction by transmitter phosphatase activity.
Huynh, TuAnh Ngoc; Stewart, Valley
2011-10-01
Bifunctional sensor transmitter modules of two-component systems exert both positive and negative control on the receiver domain of the cognate response regulator. In negative control, the transmitter module accelerates the rate of phospho-receiver dephosphorylation. This transmitter phosphatase reaction serves the important physiological functions of resetting response regulator phosphorylation level and suppressing cross-talk. Although the biochemical reactions underlying positive control are reasonably well understood, the mechanism for transmitter phosphatase activity has been unknown. A recent hypothesis is that the transmitter phosphatase reaction is catalysed by a conserved Gln, Asn or Thr residue, via a hydrogen bond between the amide or hydroxyl group and the nucleophilic water molecule in acyl-phosphate hydrolysis. This hypothetical mechanism closely resembles the established mechanisms of auxiliary phosphatases such as CheZ and CheX, and may be widely conserved in two-component signal transduction. In addition to the proposed catalytic residues, transmitter phosphatase activity also requires the correct transmitter conformation and appropriate interactions with the receiver. Evidence suggests that the phosphatase-competent and autokinase-competent states are mutually exclusive, and the corresponding negative and positive activities are likely to be reciprocally regulated through dynamic control of transmitter conformations. © 2011 Blackwell Publishing Ltd.
Two-component vector solitons in defocusing Kerr-type media with spatially modulated nonlinearity
Energy Technology Data Exchange (ETDEWEB)
Zhong, Wei-Ping, E-mail: zhongwp6@126.com [Department of Electronic and Information Engineering, Shunde Polytechnic, Guangdong Province, Shunde 528300 (China); Texas A and M University at Qatar, P.O. Box 23874 Doha (Qatar); Belić, Milivoj [Texas A and M University at Qatar, P.O. Box 23874 Doha (Qatar); Institute of Physics, University of Belgrade, P.O. Box 57, 11001 Belgrade (Serbia)
2014-12-15
We present a class of exact solutions to the coupled (2+1)-dimensional nonlinear Schrödinger equation with spatially modulated nonlinearity and a special external potential, which describe the evolution of two-component vector solitons in defocusing Kerr-type media. We find a robust soliton solution, constructed with the help of Whittaker functions. For specific choices of the topological charge, the radial mode number and the modulation depth, the solitons may exist in various forms, such as the half-moon, necklace-ring, and sawtooth vortex-ring patterns. Our results show that the profile of such solitons can be effectively controlled by the topological charge, the radial mode number, and the modulation depth. - Highlights: • Two-component vector soliton clusters in defocusing Kerr-type media are reported. • These soliton clusters are constructed with the help of Whittaker functions. • The half-moon, necklace-ring and vortex-ring patterns are found. • The profile of these solitons can be effectively controlled by three soliton parameters.
Features of protein-protein interactions in two-component signaling deduced from genomic libraries.
White, Robert A; Szurmant, Hendrik; Hoch, James A; Hwa, Terence
2007-01-01
As more and more sequence data become available, new approaches for extracting information from these data become feasible. This chapter reports on one such method that has been applied to elucidate protein-protein interactions in bacterial two-component signaling pathways. The method identifies residues involved in the interaction through an analysis of over 2500 functionally coupled proteins and a precise determination of the substitutional constraints placed on one protein by its signaling mate. Once identified, a simple log-likelihood scoring procedure is applied to these residues to build a predictive tool for assigning signaling mates. The ability to apply this method is based on a proliferation of related domains within multiple organisms. Paralogous evolution through gene duplication and divergence of two-component systems has commonly resulted in tens of closely related interacting pairs within one organism with a roughly one-to-one correspondence between signal and response. This provides us with roughly an order of magnitude more protein pairs than there are unique, fully sequenced bacterial species. Consequently, this chapter serves as both a detailed exposition of the method that has provided more depth to our knowledge of bacterial signaling and a look ahead to what would be possible on a more widespread scale, that is, to protein-protein interactions that have only one example per genome, as the number of genomes increases by a factor of 10.
Wong, Vanessa K; Pickard, Derek J; Barquist, Lars; Sivaraman, Karthikeyan; Page, Andrew J; Hart, Peter J; Arends, Mark J; Holt, Kathryn E; Kane, Leanne; Mottram, Lynda F; Ellison, Louise; Bautista, Ruben; McGee, Chris J; Kay, Sally J; Wileman, Thomas M; Kenney, Linda J; MacLennan, Calman A; Kingsley, Robert A; Dougan, Gordon
2013-01-01
Proteins exhibiting hyper-variable sequences within a bacterial pathogen may be associated with host adaptation. Several lineages of the monophyletic pathogen Salmonella enterica serovar Typhi (S. Typhi) have accumulated non-synonymous mutations in the putative two-component regulatory system yehUT. Consequently we evaluated the function of yehUT in S. Typhi BRD948 and S. Typhimurium ST4/74. Transcriptome analysis identified the cstA gene, encoding a carbon starvation protein as the predominantly yehUT regulated gene in both these serovars. Deletion of yehUT had no detectable effect on the ability of these mutant Salmonella to invade cultured epithelial cells (S. Typhi and S. Typhimurium) or induce colitis in a murine model (S. Typhimurium only). Growth, metabolic and antimicrobial susceptibility tests identified no obvious influences of yehUT on these phenotypes.
A Network Model for the Effective Thermal Conductivity of Rigid Fibrous Refractory Insulations
Marschall, Jochen; Cooper, D. M. (Technical Monitor)
1995-01-01
A procedure is described for computing the effective thermal conductivity of a rigid fibrous refractory insulation. The insulation is modeled as a 3-dimensional Cartesian network of thermal conductance. The values and volume distributions of the conductance are assigned to reflect the physical properties of the insulation, its constituent fibers, and any permeating gas. The effective thermal conductivity is computed by considering the simultaneous energy transport by solid conduction, gas conduction and radiation through a cubic volume of model insulation; thus the coupling between heat transfer modes is retained (within the simplifications inherent to the model), rather than suppressed by treating these heat transfer modes as independent. The model takes into account insulation composition, density and fiber anisotropy, as well as the geometric and material properties of the constituent fibers. A relatively good agreement, between calculated and experimentally derived thermal conductivity values, is obtained for a variety of rigid fibrous insulations.
A Principle of Corresponding States for Two-Component, Self-Gravitating Fluids
Directory of Open Access Journals (Sweden)
Caimmi, R.
2010-06-01
Full Text Available Macrogases are defined as two-component,large-scale celestial objects where the subsystems interact only via gravitation.The macrogas equation of state is formulated and compared to the van der Waals (VDWequation of state for ordinary gases.By analogy, it is assumed that real macroisothermal curves in macrogases occur as real isothermal curves in ordinary gases, where a phase transition(vapour-liquid observed in ordinary gases and gas-stars assumed in macrogases takesplace along a horizontal linein the macrovolume-macropressure{small $({sf O}sX_mathrm{V}sX_mathrm{p}$} plane.The intersections between real and theoretical(deduced from the equation of state macro isothermalcurves, make two regions of equal surface as for ordinary gases obeying the VDW equation of state.A numerical algorithm is developed for determining the following points of a selected theoretical macroisothermal curve on the {small $({sf O}sX_mathrm{V}sX_mathrm{p}$} plane:the three intersections with the related real macroisothermal curve,and the two extremum points (one maximum and one minimum. Different kinds of macrogases are studied in detail: UU, where U density profiles are flat, to be conceived as a simple guidance case; HH, where H density profiles obey the Hernquist (1990 law, which satisfactorily fits the observed spheroidal components of galaxies; HN/NH, where N density profiles obey the Navarro-Frenk-White (1995,1996, 1997 law, which satisfactorily fits the simulated nonbaryonic dark matter haloes.A different trend is shown by theoretical macroisothermal curves on the{small $({sf O}sX_mathrm{V}sX_mathrm{p}$} plane,according to whether density profiles are sufficiently mild (UU or sufficiently steep (HH, HN/NH.In the former alternative, no critical macroisothermal curve exists, below or above which the trend is monotonous. In the latter alternative, a critical macroisothermal curve exists, as shown by VDW gases, where the critical point may be defined as the horizontal
Institute of Scientific and Technical Information of China (English)
Dong-dong DENG; Ying-lan GONG; Guo-fa SHOU; Pei-feng JIAO; Heng-gui ZHANG; Xue-song YE; Ling XIA
2012-01-01
In order to better understand biatrial conduction,investigate various conduction pathways,and compare the differences between isotropic and anisotropic conductions in human atria,we present a simulation study of biatrial conduction with known/assumed conduction pathways using a recently developed human atrial model.In addition to known pathways:(1) Bachmann's bundle (BB),(2) limbus of fossa ovalis (LFO),and (3) coronary sinus (CS),we also hypothesize that there exist two fast conduction bundles that connect the crista terminalis (CT),LFO,and CS.Our simulation demonstrates that use of these fast conduction bundles results in a conduction pattern consistent with experimental data.The comparison of isotropic and anisotropoic conductions in the BB case showed that the atrial working muscles had small effect on conduction time and conduction speed,although the conductivities assigned in anisotropic conduction were two to four times higher than the isotropic conduction.In conclusion,we suggest that the hypothesized intercaval bundles play a significant role in the biatrial conduction and that myofiber orientation has larger effects on the conduction system than the atrial working muscles.This study presents readers with new insights into human atrial conduction.
Wu, Johnny; Witkiewitz, Katie; McMahon, Robert J; Dodge, Kenneth A
2010-10-01
Conduct problems, substance use, and risky sexual behavior have been shown to coexist among adolescents, which may lead to significant health problems. The current study was designed to examine relations among these problem behaviors in a community sample of children at high risk for conduct disorder. A latent growth model of childhood conduct problems showed a decreasing trend from grades K to 5. During adolescence, four concurrent conduct problem and substance use trajectory classes were identified (high conduct problems and high substance use, increasing conduct problems and increasing substance use, minimal conduct problems and increasing substance use, and minimal conduct problems and minimal substance use) using a parallel process growth mixture model. Across all substances (tobacco, binge drinking, and marijuana use), higher levels of childhood conduct problems during kindergarten predicted a greater probability of classification into more problematic adolescent trajectory classes relative to less problematic classes. For tobacco and binge drinking models, increases in childhood conduct problems over time also predicted a greater probability of classification into more problematic classes. For all models, individuals classified into more problematic classes showed higher proportions of early sexual intercourse, infrequent condom use, receiving money for sexual services, and ever contracting an STD. Specifically, tobacco use and binge drinking during early adolescence predicted higher levels of sexual risk taking into late adolescence. Results highlight the importance of studying the conjoint relations among conduct problems, substance use, and risky sexual behavior in a unified model. Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.
DEFF Research Database (Denmark)
Jers, Carsten; Kobir, Ahasanul; Søndergaard, Elsebeth Oline;
2011-01-01
Bacillus subtilis two-component system DegS/U is well known for the complexity of its regulation. The cytosolic sensory kinase DegS does not receive a single predominant input signal like most two-component kinases, instead it integrates a wide array of metabolic inputs that modulate its activity...
Institute of Scientific and Technical Information of China (English)
ZHANG Hong-Biao
2003-01-01
The eigenstates describing two-component Bose-Einstein condensates (BEC) with weakly excitations have been found, by using the SO(3,2) algebraic mean-field approximation. We show that the two-component modified BEC (see Eq (26)) possesses uniquely super-Poissonian distribution in a fixcd magnetic ficld along z direction. The distribution will be uncertain, if B ＝ 0.
Atomic Tunneling Effect in Two-Component Bose-Einstein Condensates with a Coupling Drive
Institute of Scientific and Technical Information of China (English)
JIAO Zhi-Yong; YU Zhao-Xian; YANG Xin-Jian
2004-01-01
In this paper, we have studied the atomic population difference and the atomic tunneling current of twocomponent Bose-Einstein condensates with a coupling drive. It is found that when the two-component Bose-Einstein condensates are initially in the coherent states, the atomic population difference may exhibit the step structure, in which the numbers of the step increase with the decrease of the Rabi frequency and with the increment of the initial phase difference. The atomic population difference may exhibit collapses, and revivals, in which their periods are affected dramatically by the Rabi frequency and the initial phase difference. The atomic tunneling current may exhibit damping oscillation behaviors, and exist the step structure for the time range of 10-10 ～ 10-9 second.
Global solutions for the two-component Camassa-Holm system
Grunert, K; Raynaud, X
2011-01-01
We prove existence of a global conservative solution of the Cauchy problem for the two-component Camassa-Holm (2CH) system on the line, allowing for nonvanishing and distinct asymptotics at plus and minus infinity. The solution is proven to be smooth as long as the density is bounded away from zero. Furthermore, we show that by taking the limit of vanishing density in the 2CH system, we obtain the global conservative solution of the (scalar) Camassa-Holm equation, which provides a novel way to define and obtain these solutions. Finally, it is shown that while solutions of the 2CH system have infinite speed of propagation, singularities travel with finite speed.
The sae locus of Staphylococcus aureus encodes a two-component regulatory system.
Giraudo, A T; Calzolari, A; Cataldi, A A; Bogni, C; Nagel, R
1999-08-01
Sae is a regulatory locus that activates the production of several exoproteins in Staphylococcus aureus. A 3.4-kb fragment of a S. aureus genomic library, screened with a probe adjacent to the transposon insertion of a sae::Tn551 mutant, was cloned into a bifunctional vector. This fragment was shown to carry the sae locus by restoration of exoprotein production in sae mutants. The sae locus was mapped to the SmaI-D fragment of the staphylococcal chromosome by pulse-field electrophoresis. Sequence analysis of the cloned fragment revealed the presence of two genes, designated saeR and saeS, encoding a response regulator and a histidine protein kinase, respectively, with high homology to other bacterial two-component regulatory systems.
The curvature of semidirect product groups associated with two-component Hunter-Saxton systems
Kohlmann, Martin
2011-06-01
In this paper, we study two-component versions of the periodic Hunter-Saxton equation and its μ-variant. Considering both equations as a geodesic flow on the semidirect product of the circle diffeomorphism group Diff( S) with a space of scalar functions on S we show that both equations are locally well posed. The main result of this paper is that the sectional curvature associated with the 2HS is constant and positive and that 2µHS allows for a large subspace of positive sectional curvature. The issues of this paper are related to some of the results for 2CH and 2DP presented in Escher et al (2011 J. Geom. Phys. 61 436-52).
Feshbach P -Q partitioning technique and the two-component Dirac equation
Luo, Da-Wei; Pyshkin, P. V.; Yu, Ting; Lin, Hai-Qing; You, J. Q.; Wu, Lian-Ao
2016-09-01
We provide an alternative approach to relativistic dynamics based on the Feshbach projection technique. Instead of directly studying the Dirac equation, we derive a two-component equation for the upper spinor. This approach allows one to investigate the underlying physics in a different perspective. For particles with small mass such as the neutrino, the leading-order equation has a Hermitian effective Hamiltonian, implying there is no leakage between the upper and lower spinors. In the weak relativistic regime, the leading order corresponds to a non-Hermitian correction to the Pauli equation, which takes into account the nonzero possibility of finding the lower-spinor state and offers a more precise description.
Energy Spectrum of Two-Component Bose-Einstein Condensates in Optical Lattices
Institute of Scientific and Technical Information of China (English)
HAN Jiu-Rong; LIU Jin-Ming; JING Hui; WANG Yu-Zhu
2005-01-01
With the method of Green's function, we investigate the energy spectra of two-component ultracold bosonic atoms in optical lattices. We find that there are two energy bands for each component. The critical condition of the superfluid-Mott insulator phase transition is determined by the energy band structure. We also find that the nearest neighboring and on-site interactions fail to change the structure of energy bands, but shift the energy bands only.According to the conditions of the phase transitions, three stable superfluid and Mott insulating phases can be found by adjusting the experiment parameters. We also discuss the possibility of observing these new phases and their transitions in further experiments.
The SaeRS Two-Component System of Staphylococcus aureus
Liu, Qian; Yeo, Won-Sik; Bae, Taeok
2016-01-01
In the Gram-positive pathogenic bacterium Staphylococcus aureus, the SaeRS two-component system (TCS) plays a major role in controlling the production of over 20 virulence factors including hemolysins, leukocidins, superantigens, surface proteins, and proteases. The SaeRS TCS is composed of the sensor histidine kinase SaeS, response regulator SaeR, and two auxiliary proteins SaeP and SaeQ. Since its discovery in 1994, the sae locus has been studied extensively, and its contributions to staphylococcal virulence and pathogenesis have been well documented and understood; however, the molecular mechanism by which the SaeRS TCS receives and processes cognate signals is not. In this article, therefore, we review the literature focusing on the signaling mechanism and its interaction with other global regulators. PMID:27706107
Zhang, Shumeng; Hu, Yimin; Fan, Qingyun; Wang, Xun; He, Jin
2015-08-01
YvqEC is one of the two-component signal transduction systems that may respond to cell envelope stress and enable cells to adjust multiple cellular functions. It consists of a histidine kinase YvqE and a response regulator YvqC. In this study, we separately constructed a single gene mutant ΔyvqE and a double gene mutant ΔyvqEC in Bacillus thuringiensis BMB171 through a homing endonucleases I-SceI mediated markerless gene deletion method. We found that the deletion of either yvqE or yvqEC weakened the resistance of B. thuringiensis against vancomycin. We also identified nine operons that may be involved in the cellular metabolism regulated by YvqC. This study not only enriches our understanding of bacterial resistance mechanisms against vancomycin, but also helps investigate the functions of YvqEC.
Phase Separation and Dynamics of two-component Bose-Einstein condensates
Lee, Kean Loon; Liu, I-Kang; Wacker, Lars; Arlt, Jan J; Proukakis, Nick P
2016-01-01
The miscibility of two interacting quantum systems is an important testing ground for the understanding of complex quantum systems. Two-component Bose-Einstein condensates enable the investigation of this scenario in a particularly well controlled setting. In a homogeneous system, the transition between mixed and separated phases is fully characterised by a `miscibility parameter', based on the ratio of intra- to inter-species interaction strengths. Here we show, however, that this parameter is no longer the optimal one for trapped gases, for which the location of the phase boundary depends critically on atom numbers. We demonstrate how monitoring of damping rates and frequencies of dipole oscillations enables the experimental mapping of the phase diagram by numerical implementation of a fully self-consistent finite-temperature kinetic theory for binary condensates. The change in damping rate is explained in terms of surface oscillation in the immiscible regime, and counterflow instability in the miscible reg...
Addition Formulae of Discrete KP, q-KP and Two-Component BKP Systems
Gao, Xu; Li, Chuan-Zhong; He, Jing-Song
2016-04-01
In this paper, we construct the addition formulae for several integrable hierarchies, including the discrete KP, the q-deformed KP, the two-component BKP and the D type Drinfeld-Sokolov hierarchies. With the help of the Hirota bilinear equations and τ functions of different kinds of KP hierarchies, we prove that these addition formulae are equivalent to these hierarchies. These studies show that the addition formula in the research of the integrable systems has good universality. Supported by the Zhejiang Provincial Natural Science Foundation under Grant No. LY15A010004, the National Natural Science Foundation of China under Grant Nos. 11201251, 11571192 and the Natural Science Foundation of Ningbo under Grant No. 2015A610157. Jingsong He is supported by the National Natural Science Foundation of China under Grant No. 11271210, K.C. Wong Magna Fund in Ningbo University
Preparation of two component Fibrin Glue and its clinical evaluation in skin grafts and flaps
Directory of Open Access Journals (Sweden)
Jain P
2003-01-01
Full Text Available Tissue adhesive is one of the alternative to conventional suturing and has some added advantages. Fibrin glue has been used in obtaining haemostasis following trauma to spleen and liver. It has also been used in repair of dural tear and bronchial fistula. Fibrin glue is a biological tissue adhesive based on the final stage of coagulation wherein. Thrombin acting on fibrinogen converts it into fibrin. Thus, it has two components, one is fibrinogen and another is thrombin. We have prepared both components of fibrin glue. Fibrinogen was obtained from patient's own blood and thrombin from fresh frozen plasma of screened healthy donor. The glue was used in 20 cases requiring skin graft or flap. The results were compared with conventional suturing method. Use of the fibrin glue is simple, safe, cost effective, and rapid technique to fix the skin grafts and flaps with avoidance of peroperative bleeding and postoperative collection. It also has better overall results.
PREPARATION OF PUZZOLANA ACTIVE TWO COMPONENT COMPOSITE FOR LATENT HEAT STORAGE
Directory of Open Access Journals (Sweden)
Jan Fort
2016-10-01
Full Text Available Application of Phase Change Materials (PCMs represents promising way for an increase of energy efficiency of industrial devices, reduction of energy demands for heating and cooling, waste heat recovery, solar energy storage and smart control of buildings interior climate. In this paper, the potential of diatomite as the bearer for the shape stable PCM was studied in order to develop material applicable in the mix composition of composite materials. Considering availability, endurance and compatibility of diatomite with the cement and lime based materials, preparation of diatomite/wax composite brings pozzolana active PCM with great promises at a reasonable cost. Prepared composite was analysed in detail using laser diffraction, scanning electron microscopy, Fourier transform infrared spectroscopy and differential scanning calorimetry. Also the pozzolanic activity was measured. The prepared two components composite exhibits high latent heat storage and particle size distribution compatible with cement and hydrated lime.
WalRK two component system of Bacillus anthracis responds to temperature and antibiotic stress.
Dhiman, Alisha; Gopalani, Monisha; Bhatnagar, Rakesh
2015-04-17
WalRK Two Component System (TCS) of Bacillus anthracis forms a functional TCS. This report elaborates upon the WalRK genomic architecture, promoter structure, promoter activity and expression under various stress conditions in B. anthracis. 5' RACE located the WalRK functional promoter within 317 bp region upstream of WalR. Reporter gene assays demonstrated maximal promoter activity during early growth phases indicating utility in exponential stages of growth. qRT-PCR showed upregulation of WalRK transcripts during temperature and antibiotic stress. However, WalR overexpression did not affect the tested antibiotic MIC values in B. anthracis. Collectively, these results confirm that WalRK responds to cell envelope stress in B. anthracis.
Output Rate of Atomic Four-Wave Mixing in Two-Component Bose-Einstein Condensate
Institute of Scientific and Technical Information of China (English)
LI Jia-Hua; LI Wei-Bing; PENG Ju-Cun
2004-01-01
In this letter, following the proposal of Heurich et al. [Phys. Rev. A63 (2001) 033605], we analyze and discuss output rate of atomic four-wave mixing in the two-component Bose-Einstein condensate under the condition of the steady state. The results show that the magnitude of the signal beam increases with the increase of the intensity of the probe beam, up to a saturated value, then it decreases as the probe beam increases. The influence of the interaction range on the signal beam is also predicted. In particular, it is worth while pointing out that in contrast to the previous solutions, our obtained analytical solutions are of very simple and explicit forms, which open the door for further investigating the related physical mechanisms.
Genomic analysis of two-component signal transduction proteins in basidiomycetes.
Lavín, José L; Ramírez, Lucía; Ussery, David W; Pisabarro, Antonio G; Oguiza, José A
2010-01-01
Two-component system (TCS) proteins are components of complex signal transduction pathways in fungi, and play essential roles in the regulation of several cellular functions and responses. Species of basidiomycetes have a marked variation in their specific physiological traits, morphological complexity and lifestyles. In this study, we have used the available complete genomes of basidiomycetes to carry out a thorough identification and an extensive comparative analysis of the TCS proteins in this fungal phylum. In comparison with ascomycetes, basidiomycetes exhibit an intermediate number of TCS proteins. Several TCS proteins are highly conserved among all the basidiomycetes, and other TCS proteins appear to be specific to particular species of basidiomycetes. Moreover, some species appear to have developed a unique histidine kinase group with unusual domain architecture, the Dual-histidine kinases. The presence of differential sets of TCS proteins between basidiomycete species might reflect their adaptation to diverse environmental niches.
A two-component system regulates hemin acquisition in Porphyromonas gingivalis.
Directory of Open Access Journals (Sweden)
Jodie C Scott
Full Text Available Porphyromonas gingivalis is a Gram-negative oral anaerobe associated with infection of the periodontia. The organism has a small number of two-component signal transduction systems, and after comparing genome sequences of strains W83 and ATCC 33277 we discovered that the latter was mutant in histidine kinase (PGN_0752, while the cognate response regulator (PGN_0753 remained intact. Microarray-based transcriptional profiling and ChIP-seq assays were carried out with an ATCC 33277 transconjugant containing the functional histidine kinase from strain W83 (PG0719. The data showed that the regulon of this signal transduction system contained genes that were involved in hemin acquisition, including gingipains, at least three transport systems, as well as being self-regulated. Direct regulation by the response regulator was confirmed by electrophoretic mobility shift assays. In addition, the system appears to be activated by hemin and the regulator acts as both an activator and repressor.
An intimate link: two-component signal transduction systems and metal transport systems in bacteria.
Singh, Kamna; Senadheera, Dilani B; Cvitkovitch, Dennis G
2014-01-01
Bacteria have evolved various strategies to contend with high concentrations of environmental heavy metal ions for rapid, adaptive responses to maintain cell viability. Evidence gathered in the past two decades suggests that bacterial two-component signal transduction systems (TCSTSs) are intimately involved in monitoring cation accumulation, and can regulate the expression of related metabolic and virulence genes to elicit adaptive responses to changes in the concentration of these ions. Using examples garnered from recent studies, we summarize the cross-regulatory relationships between metal ions and TCSTSs. We present evidence of how bacterial TCSTSs modulate metal ion homeostasis and also how metal ions, in turn, function to control the activities of these signaling systems linked with bacterial survival and virulence.
Two-component signal transduction as potential drug targets in pathogenic bacteria.
Gotoh, Yasuhiro; Eguchi, Yoko; Watanabe, Takafumi; Okamoto, Sho; Doi, Akihiro; Utsumi, Ryutaro
2010-04-01
Gene clusters contributing to processes such as cell growth and pathogenicity are often controlled by two-component signal transduction systems (TCSs). Specific inhibitors against TCS systems work differently from conventional antibiotics, and developing them into new drugs that are effective against various drug-resistant bacteria may be possible. Furthermore, inhibitors of TCSs that control virulence factors may reduce virulence without killing the pathogenic bacteria. Previous TCS inhibitors targeting the kinase domain of the histidine kinase sensor suffered from poor selectivity. Recent TCS inhibitors, however, target the sensory domains of the sensors blocking the quorum sensing system, or target the essential response regulator. These new targets are introduced, together with several specific TCSs that have the potential to serve as effective drug targets. Copyright 2010 Elsevier Ltd. All rights reserved.
Two-component hybrid time-dependent density functional theory within the Tamm-Dancoff approximation
Energy Technology Data Exchange (ETDEWEB)
Kühn, Michael [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Weigend, Florian, E-mail: florian.weigend@kit.edu [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Institut für Nanotechnologie, Karlsruher Institut für Technologie, Postfach 3640, 76021 Karlsruhe (Germany)
2015-01-21
We report the implementation of a two-component variant of time-dependent density functional theory (TDDFT) for hybrid functionals that accounts for spin-orbit effects within the Tamm-Dancoff approximation (TDA) for closed-shell systems. The influence of the admixture of Hartree-Fock exchange on excitation energies is investigated for several atoms and diatomic molecules by comparison to numbers for pure density functionals obtained previously [M. Kühn and F. Weigend, J. Chem. Theory Comput. 9, 5341 (2013)]. It is further related to changes upon switching to the local density approximation or using the full TDDFT formalism instead of TDA. Efficiency is demonstrated for a comparably large system, Ir(ppy){sub 3} (61 atoms, 1501 basis functions, lowest 10 excited states), which is a prototype molecule for organic light-emitting diodes, due to its “spin-forbidden” triplet-singlet transition.
Bellotti, Filipe F.; Dehkharghani, Amin S.; Zinner, Nikolaj T.
2017-02-01
We investigate one-dimensional harmonically trapped two-component systems for repulsive interaction strengths ranging from the non-interacting to the strongly interacting regime for Fermi-Fermi mixtures. A new and powerful mapping between the interaction strength parameters from a continuous Hamiltonian and a discrete lattice Hamiltonian is derived. As an example, we show that this mapping does not depend neither on the state of the system nor on the number of particles. Energies, density profiles and correlation functions are obtained both numerically (density matrix renormalization group (DMRG) and exact diagonalization) and analytically. Since DMRG results do not converge as the interaction strength is increased, analytical solutions are used as a benchmark to identify the point where these calculations become unstable. We use the proposed mapping to set a quantitative limit on the interaction parameter of a discrete lattice Hamiltonian above which DMRG gives unrealistic results.
Correlations of the upper branch of 1D harmonically trapped two-component fermi gases.
Gharashi, Seyed Ebrahim; Blume, D
2013-07-26
We present highly accurate energy spectra and eigenfunctions of small 1D harmonically trapped two-component Fermi gases with interspecies δ-function interactions, and analyze the correlations of the so-called upper branch (i.e., the branch that describes a repulsive Fermi gas consisting of atoms but no molecules) for positive and negative coupling constants. Changes of the two-body correlations as a function of the interspecies coupling strength reflect the competition of the interspecies interaction and the effective repulsion due to the Pauli exclusion principle, and are interpreted as a few-body analog of a transition from a nonmagnetic to a magnetic phase. Moreover, we show that the eigenstate ψadia of the infinitely strongly interacting system with |n1+n2|>2 and |n1-n2|Fermi-Fermi mapping function to the eigenfunction of the noninteracting single-component Fermi gas.
Universal properties of a trapped two-component fermi gas at unitarity.
Blume, D; von Stecher, J; Greene, Chris H
2007-12-01
We treat the trapped two-component Fermi system, in which unlike fermions interact through a two-body short-range potential having no bound state but an infinite scattering length. By accurately solving the Schrödinger equation for up to N=6 fermions, we show that no many-body bound states exist other than those bound by the trapping potential, and we demonstrate unique universal properties of the system: Certain excitation frequencies are separated by 2variant Planck's over 2piomega, the wave functions agree with analytical predictions and a virial theorem is fulfilled. Further calculations up to N=30 determine the excitation gap, an experimentally accessible universal quantity, and it agrees with recent predictions based on a density functional approach.
The curvature of semidirect product groups associated with two-component Hunter-Saxton systems
Energy Technology Data Exchange (ETDEWEB)
Kohlmann, Martin, E-mail: kohlmann@ifam.uni-hannover.de [Institute for Applied Mathematics, University of Hannover, D-30167 Hannover (Germany)
2011-06-03
In this paper, we study two-component versions of the periodic Hunter-Saxton equation and its {mu}-variant. Considering both equations as a geodesic flow on the semidirect product of the circle diffeomorphism group Diff(S) with a space of scalar functions on S we show that both equations are locally well posed. The main result of this paper is that the sectional curvature associated with the 2HS is constant and positive and that 2{mu}HS allows for a large subspace of positive sectional curvature. The issues of this paper are related to some of the results for 2CH and 2DP presented in Escher et al (2011 J. Geom. Phys. 61 436-52).
Phase diagram of two-component bosons on an optical lattice
Energy Technology Data Exchange (ETDEWEB)
Altman, Ehud; Hofstetter, Walter; Demler, Eugene; Lukin, Mikhail D [Department of Physics, Harvard University, Cambridge, MA 02138 (United States)
2003-09-01
We present a theoretical analysis of the phase diagram of two-component bosons on an optical lattice. A new formalism is developed which treats the effective spin interactions in the Mott and superfluid phases on the same footing. Using this new approach we chart the phase boundaries of the broken spin symmetry states up to the Mott to superfluid transition and beyond. Near the transition point, the magnitude of spin exchange can be very large, which facilitates the experimental realization of spin-ordered states. We find that spin and quantum fluctuations have a dramatic effect on the transition, making it first order in extended regions of the phase diagram. When each species is at integer filling, an additional phase transition may occur, from a spin-ordered insulator to a Mott insulator with no broken symmetries. We determine the phase boundaries in this regime and show that this is essentially a Mott transition in the spin sector.
The comparison of models for calculating heat conduction losses in laser cutting of metals
Galushkin, M. G.; Golubev, V. S.; Grishaev, R. V.; Khomenko, M. D.
2011-02-01
Numerical comparisons of some models for estimating the power losses due to heat conduction in process of gas-assisted laser cutting are presented in this paper. In spite of differences between these models their results match fairly well.
Phosphate sink containing two-component signaling systems as tunable threshold devices.
Directory of Open Access Journals (Sweden)
Munia Amin
2014-10-01
Full Text Available Synthetic biology aims to design de novo biological systems and reengineer existing ones. These efforts have mostly focused on transcriptional circuits, with reengineering of signaling circuits hampered by limited understanding of their systems dynamics and experimental challenges. Bacterial two-component signaling systems offer a rich diversity of sensory systems that are built around a core phosphotransfer reaction between histidine kinases and their output response regulator proteins, and thus are a good target for reengineering through synthetic biology. Here, we explore the signal-response relationship arising from a specific motif found in two-component signaling. In this motif, a single histidine kinase (HK phosphotransfers reversibly to two separate output response regulator (RR proteins. We show that, under the experimentally observed parameters from bacteria and yeast, this motif not only allows rapid signal termination, whereby one of the RRs acts as a phosphate sink towards the other RR (i.e. the output RR, but also implements a sigmoidal signal-response relationship. We identify two mathematical conditions on system parameters that are necessary for sigmoidal signal-response relationships and define key parameters that control threshold levels and sensitivity of the signal-response curve. We confirm these findings experimentally, by in vitro reconstitution of the one HK-two RR motif found in the Sinorhizobium meliloti chemotaxis pathway and measuring the resulting signal-response curve. We find that the level of sigmoidality in this system can be experimentally controlled by the presence of the sink RR, and also through an auxiliary protein that is shown to bind to the HK (yielding Hill coefficients of above 7. These findings show that the one HK-two RR motif allows bacteria and yeast to implement tunable switch-like signal processing and provides an ideal basis for developing threshold devices for synthetic biology applications.
DEFF Research Database (Denmark)
Islam, Aminul; Hansen, Hans Nørgaard; Marhöfer, David Maximilian
2011-01-01
Two component (2k) injection moulding is growing rapidly even in the field of precision micro moulding. Besides combining different material properties in the same product, two component moulding can eliminate many assembly steps in manufacturing process chain. One of the biggest technical...... challenges associated with 2k moulding is the unavailability of suitable two component material combinations which can meet the diverse requirement from product and process point of view. This paper presents a new pair of commercial polymer materials (BASF Ultramid A3EG10 and Kraiburg TPE Thermolast K TC5PCZ......-of-the-art two component micro moulding machine named Formica Plast from Desma Tec. The tests performed on the demonstrator showed potential for the material pair to be used in high precision two component moulding applications. The adhesion between the two materials, replication quality of the 2k part, sealing...
Asymmetric Heat Conduction in One-Dimensional Hard-Point Model with Mass Gradient
Institute of Scientific and Technical Information of China (English)
LI Hai-Bin; NIE Qing-Miao; XIN Xiao-Tian
2009-01-01
The heat conduction in a one-dimensional (1D) hard-point model with mass gradient is studied. Using numerical simulation, we find an asymmetric heat conduction in this model with greater heat current in the direction of mass increase. The increase of temperature gradient, mass gradient and system size are found to enhance the asymmetric heat conduction. Based on the collision dynamic of a hard-point particle, we give a qualitative explanation for the underlying mechanism of asymmetric effect.
Energy Technology Data Exchange (ETDEWEB)
Stigsson, Martin
2009-12-15
The objectives of this report is to investigate the frequency of fractures assumed to be water conductive, i.e. open or partly open and directly or indirectly connected to a source. Also the distribution of total transmissivity in 100 m and 20 m horizontal sections and 8 m vertical sections is calculated. The report is only intended to serve as input to the SER, Site Engineering Report, at Laxemar and Forsmark. The input data for the analyses is taken, as is, from the Discrete Fracture Network sections in published reports. No evaluation that the model parameters are appropriate for the task or sensitivity analysis is performed. The tunnels and deposition holes are modelled as scanlines which is a very coarse approximation, but it may give some rough estimation of the frequency of the water bearing features, especially for the larger ones, and the total transmissivity in a section
Study on Unit Cell Models and the Effective Thermal Conductivities of Silica Aerogel.
Liu, He; Li, Zeng-Yao; Zhao, Xin-Peng; Tao, Wen-Quan
2015-04-01
In this paper, two modified unit cell models, truncated octahedron and cubic array of intersecting square rods with 45-degree rotation, are developed in consideration of the tortuous path of heat conduction in solid skeleton of silica aerogel. The heat conduction is analyzed for each model and the expressions of effective thermal conductivity of the modified unit cell models are derived. Considering the random microstructure of silica aerogel, the probability model is presented. We also discuss the effect of the thermal conductivity of aerogel backbone. The effective thermal conductivities calculated by the proposed probability model are in good agreement with available experimental data when the density of the aerogel is 110 kg/m3.
Modelling the Complex Conductivity of Charged Porous Media using The Grain Polarization Model
Leroy, P.; Revil, A.; Jougnot, D.; Li, S.
2015-12-01
The low-frequency complex conductivity response of charged porous media reflects a combination of three polarization processes occuring at different frequency ranges. One polarization process corresponds to the membrane polarization phenomenon, which is the polarization mechanism associated with the back-diffusion of salt ions through different pore spaces of the porous material (ions-selective zones and zones with no selectivity). This polarization process generally occurs at the lowest frequency range, typically in the frequency range [mHz Hz] because it involves polarization mechanism occurring over different pore spaces (the relaxation frequency is inversely proportional to the length of the polarization process). Another polarization process corresponds to the electrochemical polarization of the electrical double layer coating the surface of the grains. In the grain polarization model, the diffuse layer is assumed to not polarize because it is assumed to form a continuum in the porous medium. The compact Stern layer is assumed to polarize because the Stern layer is assumed to be discontinuous over multiple grains. The electrochemical polarization of the Stern layer typically occurs in the frequency range [Hz kHz]. The last polarization process corresponds to the Maxwell-Wagner polarization mechanism, which is caused by the formation of field-induced free charge distributions near the interface between the phases of the medium. In this presentation, the grain polarization model based on the O'Konski, Schwarz, Schurr and Sen theories and developed later by Revil and co-workers is showed. This spectral induced polarization model was successfully applied to describe the complex conductivity responses of glass beads, sands, clays, clay-sand mixtures and other minerals. The limits of this model and future developments will also be presented.
Compilation of 3D global conductivity model of the Earth for space weather applications
Alekseev, Dmitry; Kuvshinov, Alexey; Palshin, Nikolay
2015-07-01
We have compiled a global three-dimensional (3D) conductivity model of the Earth with an ultimate goal to be used for realistic simulation of geomagnetically induced currents (GIC), posing a potential threat to man-made electric systems. Bearing in mind the intrinsic frequency range of the most intense disturbances (magnetospheric substorms) with typical periods ranging from a few minutes to a few hours, the compiled 3D model represents the structure in depth range of 0-100 km, including seawater, sediments, earth crust, and partly the lithosphere/asthenosphere. More explicitly, the model consists of a series of spherical layers, whose vertical and lateral boundaries are established based on available data. To compile a model, global maps of bathymetry, sediment thickness, and upper and lower crust thicknesses as well as lithosphere thickness are utilized. All maps are re-interpolated on a common grid of 0.25×0.25 degree lateral spacing. Once the geometry of different structures is specified, each element of the structure is assigned either a certain conductivity value or conductivity versus depth distribution, according to available laboratory data and conversion laws. A numerical formalism developed for compilation of the model, allows for its further refinement by incorporation of regional 3D conductivity distributions inferred from the real electromagnetic data. So far we included into our model four regional conductivity models, available from recent publications, namely, surface conductance model of Russia, and 3D conductivity models of Fennoscandia, Australia, and northwest of the United States.
Directory of Open Access Journals (Sweden)
My Trihn
Full Text Available Streptococci resident in the oral cavity have been linked to infective endocarditis (IE. While other viridans streptococci are commonly studied in relation to IE, less research has been focused on Streptococcus pneumoniae. We established for the first time an animal model of S. pneumoniae IE, and examined the virulence of the TIGR4 strain in this model. We hypothesized that two-component systems (TCS may mediate S. pneumoniae TIGR4 strain virulence in IE and examined TCS response regulator (RR mutants of TIGR4 in vivo with the IE model. Thirteen of the 14 RR protein genes were mutagenized, excluding only the essential gene SP_1227. The requirement of the 13 RRs for S. pneumoniae competitiveness in the IE model was assessed in vivo through use of quantitative real-time PCR (qPCR and competitive index assays. Using real-time PCR, several RR mutants were detected at significantly lower levels in infected heart valves compared with a control strain suggesting the respective RRs are candidate virulence factors for IE. The virulence reduction of the ΔciaR mutant was further confirmed by competitive index assay. Our data suggest that CiaR is a virulence factor of S. pneumoniae strain TIGR4 for IE.
Trihn, My; Ge, Xiuchun; Dobson, Alleson; Kitten, Todd; Munro, Cindy L; Xu, Ping
2013-01-01
Streptococci resident in the oral cavity have been linked to infective endocarditis (IE). While other viridans streptococci are commonly studied in relation to IE, less research has been focused on Streptococcus pneumoniae. We established for the first time an animal model of S. pneumoniae IE, and examined the virulence of the TIGR4 strain in this model. We hypothesized that two-component systems (TCS) may mediate S. pneumoniae TIGR4 strain virulence in IE and examined TCS response regulator (RR) mutants of TIGR4 in vivo with the IE model. Thirteen of the 14 RR protein genes were mutagenized, excluding only the essential gene SP_1227. The requirement of the 13 RRs for S. pneumoniae competitiveness in the IE model was assessed in vivo through use of quantitative real-time PCR (qPCR) and competitive index assays. Using real-time PCR, several RR mutants were detected at significantly lower levels in infected heart valves compared with a control strain suggesting the respective RRs are candidate virulence factors for IE. The virulence reduction of the ΔciaR mutant was further confirmed by competitive index assay. Our data suggest that CiaR is a virulence factor of S. pneumoniae strain TIGR4 for IE.
In vitro burn model illustrating heat conduction patterns using compressed thermal papers.
Lee, Jun Yong; Jung, Sung-No; Kwon, Ho
2015-01-01
To date, heat conduction from heat sources to tissue has been estimated by complex mathematical modeling. In the present study, we developed an intuitive in vitro skin burn model that illustrates heat conduction patterns inside the skin. This was composed of tightly compressed thermal papers with compression frames. Heat flow through the model left a trace by changing the color of thermal papers. These were digitized and three-dimensionally reconstituted to reproduce the heat conduction patterns in the skin. For standardization, we validated K91HG-CE thermal paper using a printout test and bivariate correlation analysis. We measured the papers' physical properties and calculated the estimated depth of heat conduction using Fourier's equation. Through contact burns of 5, 10, 15, 20, and 30 seconds on porcine skin and our burn model using a heated brass comb, and comparing the burn wound and heat conduction trace, we validated our model. The heat conduction pattern correlation analysis (intraclass correlation coefficient: 0.846, p < 0.001) and the heat conduction depth correlation analysis (intraclass correlation coefficient: 0.93, p < 0.001) showed statistically significant high correlations between the porcine burn wound and our model. Our model showed good correlation with porcine skin burn injury and replicated its heat conduction patterns.
Models for Unsaturated Hydraulic Conductivity Based on Truncated Lognormal Pore-size Distributions
Malama, Bwalya
2013-01-01
We develop a closed-form three-parameter model for unsaturated hydraulic conductivity associated with a three-parameter lognormal model of moisture retention, which is based on lognormal grainsize distribution. The derivation of the model is made possible by a slight modification to the theory of Mualem. We extend the three-parameter lognormal distribution to a four-parameter model that also truncates the pore size distribution at a minimum pore radius. We then develop the corresponding four-parameter model for moisture retention and the associated closed-form expression for unsaturated hydraulic conductivity. The four-parameter model is fitted to experimental data, similar to the models of Kosugi and van Genuchten. The proposed four-parameter model retains the physical basis of Kosugi's model, while improving fit to observed data especially when simultaneously fitting pressure-saturation and pressure-conductivity data.
Holographic conductivity of 1+1 dimensional systems in soft wall model
Bhatnagar, Neha
2016-01-01
We study the optical conductivity of 1+1 dimensional systems using soft wall model in the bottom up approach of AdS/CFT (anti-de Sitter/conformal field theory) duality. We find the numerical results for optical conductivity and investigate the system using holographic model in the probe limit. The dependence of conductivity on chemical potential is also investigated. Further, we extend the soft wall model as a `no-wall' model by eliminating the dilaton background and study the response of the system in a simplified approach.
A Model of Thermal Conductivity for Planetary Soils: 1. Theory for Unconsolidated Soils
Piqueux, S.; Christensen, P. R.
2009-01-01
We present a model of heat conduction for mono-sized spherical particulate media under stagnant gases based on the kinetic theory of gases, numerical modeling of Fourier s law of heat conduction, theoretical constraints on the gas thermal conductivity at various Knudsen regimes, and laboratory measurements. Incorporating the effect of the temperature allows for the derivation of the pore-filling gas conductivity and bulk thermal conductivity of samples using additional parameters (pressure, gas composition, grain size, and porosity). The radiative and solid-to-solid conductivities are also accounted for. Our thermal model reproduces the well-established bulk thermal conductivity dependency of a sample with the grain size and pressure and also confirms laboratory measurements finding that higher porosities generally lead to lower conductivities. It predicts the existence of the plateau conductivity at high pressure, where the bulk conductivity does not depend on the grain size. The good agreement between the model predictions and published laboratory measurements under a variety of pressures, temperatures, gas compositions, and grain sizes provides additional confidence in our results. On Venus, Earth, and Titan, the pressure and temperature combinations are too high to observe a soil thermal conductivity dependency on the grain size, but each planet has a unique thermal inertia due to their different surface temperatures. On Mars, the temperature and pressure combination is ideal to observe the soil thermal conductivity dependency on the average grain size. Thermal conductivity models that do not take the temperature and the pore-filling gas composition into account may yield significant errors.
Directory of Open Access Journals (Sweden)
Ming-Che Liu
Full Text Available Stenotrophomonas maltophilia, a gram-negative bacterium, has increasingly emerged as an important nosocomial pathogen. It is well-known for resistance to a variety of antimicrobial agents including cationic antimicrobial polypeptides (CAPs. Resistance to polymyxin B, a kind of CAPs, is known to be controlled by the two-component system PhoPQ. To unravel the role of PhoPQ in polymyxin B resistance of S. maltophilia, a phoP mutant was constructed. We found MICs of polymyxin B, chloramphenicol, ampicillin, gentamicin, kanamycin, streptomycin and spectinomycin decreased 2-64 fold in the phoP mutant. Complementation of the phoP mutant by the wild-type phoP gene restored all of the MICs to the wild type levels. Expression of PhoP was shown to be autoregulated and responsive to Mg2+ levels. The polymyxin B and gentamicin killing tests indicated that pretreatment of low Mg2+ can protect the wild-type S. maltophilia from killing but not phoP mutant. Interestingly, we found phoP mutant had a decrease in expression of SmeZ, an efflux transporter protein for aminoglycosides in S. maltophilia. Moreover, phoP mutant showed increased permeability in the cell membrane relative to the wild-type. In summary, we demonstrated the two-component regulator PhoP of S. maltophilia is involved in antimicrobial susceptibilities and low Mg2+ serves as a signal for triggering the pathway. Both the alteration in membrane permeability and downregulation of SmeZ efflux transporter in the phoP mutant contributed to the increased drug susceptibilities of S. maltophilia, in particular for aminoglycosides. This is the first report to describe the role of the Mg2+-sensing PhoP signaling pathway of S. maltophilia in regulation of the SmeZ efflux transporter and in antimicrobial susceptibilities. This study suggests PhoPQ TCS may serve as a target for development of antimicrobial agents against multidrug-resistant S. maltophilia.
Teschler, Jennifer K; Cheng, Andrew T; Yildiz, Fitnat H
2017-09-15
Two-component signal transduction systems (TCSs), typically composed of a sensor histidine kinase (HK) and a response regulator (RR), are the primary mechanism by which pathogenic bacteria sense and respond to extracellular signals. The pathogenic bacterium Vibrio cholerae is no exception and harbors 52 RR genes. Using in-frame deletion mutants of each RR gene, we performed a systematic analysis of their role in V. cholerae biofilm formation. We determined that 7 RRs impacted the expression of an essential biofilm gene and found that the recently characterized RR, VxrB, regulates the expression of key structural and regulatory biofilm genes in V. choleraevxrB is part of a 5-gene operon, which contains the cognate HK vxrA and three genes of unknown function. Strains carrying ΔvxrA and ΔvxrB mutations are deficient in biofilm formation, while the ΔvxrC mutation enhances biofilm formation. The overexpression of VxrB led to a decrease in motility. We also observed a small but reproducible effect of the absence of VxrB on the levels of cyclic di-GMP (c-di-GMP). Our work reveals a new function for the Vxr TCS as a regulator of biofilm formation and suggests that this regulation may act through key biofilm regulators and the modulation of cellular c-di-GMP levels.IMPORTANCE Biofilms play an important role in the Vibrio cholerae life cycle, providing protection from environmental stresses and contributing to the transmission of V. cholerae to the human host. V. cholerae can utilize two-component systems (TCS), composed of a histidine kinase (HK) and a response regulator (RR), to regulate biofilm formation in response to external cues. We performed a systematic analysis of V. cholerae RRs and identified a new regulator of biofilm formation, VxrB. We demonstrated that the VxrAB TCS is essential for robust biofilm formation and that this system may regulate biofilm formation via its regulation of key biofilm regulators and cyclic di-GMP levels. This research furthers our
Sengupta, Shreya; Prajapati, Ranjit Kumar; Mukhopadhyay, Jayanta
2015-11-20
The transition from the formation of the RNA polymerase (RNAP)-promoter open complex step to the productive elongation complex step involves "promoter escape" of RNAP. From the structure of RNAP, a promoter escape model has been proposed that suggests that the interactions between σR4 and RNAP and σR4 and DNA are destabilized upon transition to elongation. This accounts for the reduced affinity of σ to RNAP and stochastic release of σ. However, as the loss of interaction of σR4 with RNAP results in the release of intact σ, assessing this interaction remains challenging to be experimentally verified. Here we study the promoter escape model using a two-component σ factor YvrI and YvrHa from Bacillus subtilis that independently contributes to the functions of σR4 and σR2 in a RNAP-promoter complex. Our results show that YvrI, which mimics σR4, is released gradually as transcription elongation proceeds, whereas YvrHa, which mimics σR2 is retained throughout the elongation complexes. Thus our result validates the proposed model for promoter escape and also suggests that promoter escape involves little or no change in the interaction of σR2 with RNAP.
Multi-ion conduction bands in a simple model of calcium ion channels
Kaufman, I; Tindjong, R; McClintock, P V E; Eisenberg, R S
2012-01-01
We report self-consistent Brownian dynamics simulations of a simple electrostatic model of the selectivity filters (SF) of calcium ion channels. They reveal regular structure in the conductance and selectivity as functions of the fixed negative charge Qf at the SF. This structure comprises distinct regions of high conductance (conduction bands) M0, M1, M2 separated by regions of zero-conductance (stop-bands). Two of these conduction bands, M1 and M2, demonstrate high calcium selectivity and prominent anomalous mole fraction effects and can be identified with the L-type and RyR calcium channels.
Stenroos, Matti; Hauk, Olaf
2013-11-01
The conductivity profile of the head has a major effect on EEG signals, but unfortunately the conductivity for the most important compartment, skull, is only poorly known. In dipole modeling studies, errors in modeled skull conductivity have been considered to have a detrimental effect on EEG source estimation. However, as dipole models are very restrictive, those results cannot be generalized to other source estimation methods. In this work, we studied the sensitivity of EEG and combined MEG+EEG source estimation to errors in skull conductivity using a distributed source model and minimum-norm (MN) estimation. We used a MEG/EEG modeling set-up that reflected state-of-the-art practices of experimental research. Cortical surfaces were segmented and realistically-shaped three-layer anatomical head models were constructed, and forward models were built with Galerkin boundary element method while varying the skull conductivity. Lead-field topographies and MN spatial filter vectors were compared across conductivities, and the localization and spatial spread of the MN estimators were assessed using intuitive resolution metrics. The results showed that the MN estimator is robust against errors in skull conductivity: the conductivity had a moderate effect on amplitudes of lead fields and spatial filter vectors, but the effect on corresponding morphologies was small. The localization performance of the EEG or combined MEG+EEG MN estimator was only minimally affected by the conductivity error, while the spread of the estimate varied slightly. Thus, the uncertainty with respect to skull conductivity should not prevent researchers from applying minimum norm estimation to EEG or combined MEG+EEG data. Comparing our results to those obtained earlier with dipole models shows that general judgment on the performance of an imaging modality should not be based on analysis with one source estimation method only.
Two-component coupled KdV equations and its connection with the generalized Harry Dym equations
Energy Technology Data Exchange (ETDEWEB)
Popowicz, Ziemowit, E-mail: ziemek@ift.uni.wroc.pl [Institute of Theoretical Physics, University of Wrocław, Wrocław pl. M. Borna 9, 50-205 Wrocław (Poland)
2014-01-15
It is shown that three different Lax operators in the Dym hierarchy produce three generalized coupled Harry Dym equations. These equations transform, via the reciprocal link, to the coupled two-component Korteweg de Vries (KdV) system. The first equation gives us known integrable two-component KdV system, while the second reduces to the known symmetrical two-component KdV equation. The last one reduces to the Drienfeld-Sokolov equation. This approach gives us new Lax representation for these equations.
Two-component coupled KdV equations and its connection with the generalized Harry Dym equations
Popowicz, Ziemowit
2014-01-01
It is shown that three different Lax operators in the Dym hierarchy produce three generalized coupled Harry Dym equations. These equations transform, via the reciprocal link, to the coupled two-component Korteweg de Vries (KdV) system. The first equation gives us known integrable two-component KdV system, while the second reduces to the known symmetrical two-component KdV equation. The last one reduces to the Drienfeld-Sokolov equation. This approach gives us new Lax representation for these equations.
MECHANICAL RELAXATION TIME OF A TWO-COMPONENT EPOXY NETWORK-LiClO4 POLYMER ELECTROLYTE
Institute of Scientific and Technical Information of China (English)
PENG Xinsheng; WU Shuyun; CHEN Donglin
1993-01-01
The mechanical relaxation time of a two-component epoxy network-LiClO4 system as a polymer electrolyte was investigated.The network is composed of diglycidyl ether of polyethylene glycol (DGEPEG) and triglycidyl ether of glycerol (TGEG),wherein LiClO4 was incorporated and acts as both the ionic carrier and the curing catalyst.As the relaxation time is informative to the segmental mobility,which is known to be essential for ionic conductivity,the average relaxation times of the specimens were determined through master curve construction.Experimental results showed that the salt concentration,molecular weight of PEG in DGEPEG and DGEPEG/TGEG ratio have profound effect on the relaxation time of the specimen.Among these factors,the former reinforces the network hains,leading to lengthen the relaxation time,whereas the latter two are in favour of the chain flexibility and show an opposite effect.The findings was rationalized in terms of the free volume concept.
Iden, Sascha C.; Peters, Andre; Durner, Wolfgang
2015-11-01
The prediction of unsaturated hydraulic conductivity from the soil water retention curve by pore-bundle models is a cost-effective and widely applied technique. One problem for conductivity predictions from retention functions with continuous derivatives, i.e. continuous water capacity functions, is that the hydraulic conductivity curve exhibits a sharp drop close to water saturation if the pore-size distribution is wide. So far this artifact has been ignored or removed by introducing an explicit air-entry value into the capillary saturation function. However, this correction leads to a retention function which is not continuously differentiable. We present a new parameterization of the hydraulic properties which uses the original saturation function (e.g. of van Genuchten) and introduces a maximum pore radius only in the pore-bundle model. In contrast to models using an explicit air entry, the resulting conductivity function is smooth and increases monotonically close to saturation. The model concept can easily be applied to any combination of retention curve and pore-bundle model. We derive closed-form expressions for the unimodal and multimodal van Genuchten-Mualem models and apply the model concept to curve fitting and inverse modeling of a transient outflow experiment. Since the new model retains the smoothness and continuous differentiability of the retention model and eliminates the sharp drop in conductivity close to saturation, the resulting hydraulic functions are physically more reasonable and ideal for numerical simulations with the Richards equation or multiphase flow models.
Directory of Open Access Journals (Sweden)
Mhamad Abou-Hamdan
2015-08-01
Full Text Available Abstract The bacterial genus Bartonella is classified in the alpha-2 Proteobacteria on the basis of 16S rDNA sequence comparison. The Bartonella two-component system feuPQ is found in nearly all bacterial species. We investigated the usefulness of the response regulator feuP gene sequence in the classification of 18 well characterized Bartonella species. Phylogenetic relationships were inferred using parsimony neighbour-joining and maximum-likelihood methods. Reliable classifications of most of the studied species were obtained. Bartonella were divided into two supported clades containing two supported clusters each. These results were similar to our previous data obtained with groEL ftsZ and ribC genes sequences. The wide range of feuP DNA sequence similarity 78.6 to 96.5 among Bartonella species makes it a promising candidate for multi-locus sequence typing MLST of clinical isolates. This is the first report proving the usefulness of feuP sequences in bartonellae classification at the species level.
Comparative Analysis of Two-component Signal Transduction System in Two Streptomycete Genomes
Institute of Scientific and Technical Information of China (English)
Wu WEI; Yixue LI; Weihua WANG; Zhiwei CAO; Hong YU; Xiaojing WANG; Jing ZHAO; Hao TAN; Hao XU; Weihong JIANG
2007-01-01
Species of the genus Streptomyces are major bacteria responsible for producing most natural antibiotics. Streptomyces coelicolor A3(2) and Streptomyces avermitilis were sequenced in 2002 and 2003,respectively. Two-component signal transduction systems (TCSs), consisting of a histidine sensor kinase (SK) and a cognate response regulator (RR), form the most common mechanism of transmembrane signal transduction in prokaryotes. TCSs in S. coelicolor A3(2) have been analyzed in detail. Here, we identify and classify the SK and RR of S. avermitilis and compare the TCSs with those of S. coelicolor A3(2) by computational approaches. Phylogenetic analysis of the cognate SK-RR pairs of the two species indicated that the cognate SK-RR pairs fall into four classes according to the distribution of their orthologs in other organisms. In addition to the cognate SK-RR pairs, some potential partners of non-cognate SK-RR were found, including those of unpaired SK and orphan RR and the cross-talk between different components in either strain. Our study provides new clues for further exploration of the molecular regulation mechanism of streptomycetes with industrial importance.
The Evolution of Two-Component Systems in Bacteria RevealsDifferent Strategies for Niche Adaptation
Energy Technology Data Exchange (ETDEWEB)
Alm, Eric; Huang, Katherine; Arkin, Adam
2006-09-13
Two-component systems including histidine protein kinasesrepresent the primary signal transduction paradigm in prokaryoticorganisms. To understand how these systems adapt to allow organisms todetect niche-specific signals, we analyzed the phylogenetic distributionof nearly 5000 histidine protein kinases from 207 sequenced prokaryoticgenomes. We found that many genomes carry a large repertoire of recentlyevolved signaling genes, which may reflect selective pressure to adapt tonew environmental conditions. Both lineage-specific gene family expansionand horizontal gene transfer play major roles in the introduction of newhistidine kinases into genomes; however, there are differences in howthese two evolutionary forces act. Genes imported via horizontal transferare more likely to retain their original functionality as inferred from asimilar complement of signaling domains, while gene family expansionaccompanied by domain shuffling appears to be a major source of novelgenetic diversity. Family expansion is the dominantsource of newhistidine kinase genes in the genomes most enriched in signalingproteins, and detailed analysis reveals that divergence in domainstructure and changes in expression patterns are hallmarks of recentexpansions. Finally, while these two modes of gene acquisition arewidespread across bacterial taxa, there are clear species-specificpreferences for which mode is used.
Zhou, Lei; Yang, Liu; Zeng, Xianfei; Danzheng, Jiacuo; Zheng, Qing; Liu, Jiayun; Liu, Feng; Xin, Yijuan; Cheng, Xiaodong; Su, Mingquan; Ma, Yueyun; Hao, Xiaoke
2015-07-01
Two-component systems (TCSs) have been reported to exhibit a sensing and responding role under drug stress that induces drug resistance in several bacterial species. However, the relationship between TCSs and multidrug resistance in Mycobacterium tuberculosis has not been comprehensively analysed to date. In this study, 90 M. tuberculosis clinical isolates were analysed using 15-loci mycobacterial interspersed repetitive unit (MIRU)-variable number tandem repeat (VNTR) typing and repetitive extragenic palindromic (rep)-PCR-based DNA fingerprinting. The results showed that all of the isolates were of the Beijing lineage, and strains with a drug-susceptible phenotype had not diverged into similar genotype clusters. Expression analysis of 13 response regulators of TCSs using real-time PCR and tandem mass spectrometry (MS/MS) proteomic analysis demonstrated that four response regulator genes (devR, mtrA, regX3 and Rv3143) were significantly upregulated in multidrug-resistant (MDR) strains compared with the laboratory strain H37Rv as well as drug-susceptible and isoniazid-monoresistant strains (PMycobacterium bovis BCG did not alter its sensitivity to the four antitubercular drugs. This suggests that upregulation of devR, which is common in MDR-TB strains, might be induced by drug stress and hypoxic adaptation following the acquisition of multidrug resistance.
Singular solutions of a modified two-component Camassa-Holm equation.
Holm, Darryl D; O Náraigh, Lennon; Tronci, Cesare
2009-01-01
The Camassa-Holm (CH) equation is a well-known integrable equation describing the velocity dynamics of shallow water waves. This equation exhibits spontaneous emergence of singular solutions (peakons) from smooth initial conditions. The CH equation has been recently extended to a two-component integrable system (CH2), which includes both velocity and density variables in the dynamics. Although possessing peakon solutions in the velocity, the CH2 equation does not admit singular solutions in the density profile. We modify the CH2 system to allow a dependence on the average density as well as the pointwise density. The modified CH2 system (MCH2) does admit peakon solutions in the velocity and average density. We analytically identify the steepening mechanism that allows the singular solutions to emerge from smooth spatially confined initial data. Numerical results for the MCH2 system are given and compared with the pure CH2 case. These numerics show that the modification in the MCH2 system to introduce the average density has little short-time effect on the emergent dynamical properties. However, an analytical and numerical study of pairwise peakon interactions for the MCH2 system shows a different asymptotic feature. Namely, besides the expected soliton scattering behavior seen in overtaking and head-on peakon collisions, the MCH2 system also allows the phase shift of the peakon collision to diverge in certain parameter regimes.
ACOUSTIC WAVES EMISSION IN THE TWO-COMPONENT HEREDITARY-ELASTIC MEDIUM
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V. S. Polenov
2014-01-01
Full Text Available Summary. On the dynamics of two-component media a number of papers, which address the elastic waves in a homogeneous, unbounded fluid-saturated porous medium. In other studies address issues of dissipative processes in harmonic deformation hereditary elastic medium. In the article the dissipative processes of the viscoelastic porous medium, which hereditary properties are described by the core relaxation fractional exponential function U.N. Rabotnova integro-differential Boltzmann-Volterr ratio, harmonic deformation by the straining saturated incompressible liquid are investigated. Speed of wave propagation, absorption coefficient, mechanical loss tangent, logarithmic decrement, depending on fractional parameter γ, determining formulas received. The frequency logarithm and temperature graph dependences with the goal fractional parameter are constructed. Shows the dependences velocity and attenuation coefficient of the tangent of the phase angle of the logarithm of the temperature, and the dependence of the attenuation coefficient of the logarithm of the frequency. Dependencies the speed and the tangent of the phase angle of the frequency identical function of the logarithm of temperature.
Cui, Yanhua; Liu, Wei; Qu, Xiaojun; Chen, Zhangting; Zhang, Xu; Liu, Tong; Zhang, Lanwei
2012-05-20
The Gram-positive bacterium Lactobacillus delbrueckii subsp. bulgaricus is of vital importance to the food industry, especially to the dairy industry. Two component systems (TCSs) are one of the most important mechanisms for environmental sensing and signal transduction in the majority of Gram-positive and Gram-negative bacteria. A typical TCS consists of a histidine protein kinase (HPK) and a cytoplasmic response regulator (RR). To investigate the functions of TCSs during acid adaptation in L. bulgaricus, we used quantitative PCR to reveal how TCSs expression changes during acid adaptation. Two TCSs (JN675228/JN675229 and JN675230/JN675231) and two HPKs (JN675236 and JN675240) were induced during acid adaptation. These TCSs were speculated to be related with the acid adaptation ability of L. bulgaricus. The mutants of JN675228/JN675229 were constructed in order to investigate the functions of JN675228/JN675229. The mutants showed reduced acid adaptation compared to that of wild type, and the complemented strains were similar to the wild-type strain. These observations suggested that JN675228 and JN675229 were involved in acid adaptation in L. bulgaricus. The interaction between JN675228 and JN675229 was identified by means of yeast two-hybrid system. The results indicated there is interaction between JN675228 and JN675229.
Monte Carlo simulations of two-component drop growth by stochastic coalescence
Alfonso, L.; Raga, G. B.; Baumgardner, D.
2009-02-01
The evolution of two-dimensional drop distributions is simulated in this study using a Monte Carlo method. The stochastic algorithm of Gillespie (1976) for chemical reactions in the formulation proposed by Laurenzi et al. (2002) was used to simulate the kinetic behavior of the drop population. Within this framework, species are defined as droplets of specific size and aerosol composition. The performance of the algorithm was checked by a comparison with the analytical solutions found by Lushnikov (1975) and Golovin (1963) and with finite difference solutions of the two-component kinetic collection equation obtained for the Golovin (sum) and hydrodynamic kernels. Very good agreement was observed between the Monte Carlo simulations and the analytical and numerical solutions. A simulation for realistic initial conditions is presented for the hydrodynamic kernel. As expected, the aerosol mass is shifted from small to large particles due to collection process. This algorithm could be extended to incorporate various properties of clouds such several crystals habits, different types of soluble CCN, particle charging and drop breakup.
Monte Carlo simulations of two-component drop growth by stochastic coalescence
Directory of Open Access Journals (Sweden)
L. Alfonso
2009-02-01
Full Text Available The evolution of two-dimensional drop distributions is simulated in this study using a Monte Carlo method. The stochastic algorithm of Gillespie (1976 for chemical reactions in the formulation proposed by Laurenzi et al. (2002 was used to simulate the kinetic behavior of the drop population. Within this framework, species are defined as droplets of specific size and aerosol composition. The performance of the algorithm was checked by a comparison with the analytical solutions found by Lushnikov (1975 and Golovin (1963 and with finite difference solutions of the two-component kinetic collection equation obtained for the Golovin (sum and hydrodynamic kernels. Very good agreement was observed between the Monte Carlo simulations and the analytical and numerical solutions. A simulation for realistic initial conditions is presented for the hydrodynamic kernel. As expected, the aerosol mass is shifted from small to large particles due to collection process. This algorithm could be extended to incorporate various properties of clouds such several crystals habits, different types of soluble CCN, particle charging and drop breakup.
Photonic band-gap properties for two-component slow light
Ruseckas, J; Juzeliunas, G; Unanyan, R G; Otterbach, J; Fleischhauer, M
2011-01-01
We consider two-component "spinor" slow light in an ensemble of atoms coherently driven by two pairs of counterpropagating control laser fields in a double tripod-type linkage scheme. We derive an equation of motion for the spinor slow light (SSL) representing an effective Dirac equation for a massive particle with the mass determined by the two-photon detuning. By changing the detuning the atomic medium acts as a photonic crystal with a controllable band gap. If the frequency of the incident probe light lies within the band gap, the light tunnels through the sample. For frequencies outside the band gap, the transmission probability oscillates with increasing length of the sample. In both cases the reflection takes place into the complementary mode of the probe field. We investigate the influence of the finite excited state lifetime on the transmission and reflection coefficients of the probe light. We discuss possible experimental implementations of the SSL using alkali atoms such as Rubidium or Sodium.
Rotational properties of two-component Bose gases in the lowest Landau level
Meyer, Marius; Sreejith, Ganesh Jaya; Viefers, Susanne
2015-03-01
We study the rotational (yrast) spectra of dilute two-component atomic Bose gases in the low angular momentum regime, assuming equal interspecies and intraspecies interaction. Our analysis employs the composite fermion (CF) approach including a pseudospin degree of freedom. While the CF approach is not a priori expected to work well in this angular momentum regime, we show that composite fermion diagonalization gives remarkably accurate approximations to low energy states in the spectra. For angular momenta 0 = N), we find that the CF states span the full Hilbert space and provide a convenient set of basis states which, by construction, are eigenstates of the symmetries of the Hamiltonian. Within this CF basis, we identify a subset of the basis states with the lowest Λ-level kinetic energy. Diagonalization within this significally smaller subspace constitutes a major computational simplification and provides very close approximations to ground states and a number of low-lying states within each pseudospin and angular momentum channel. This work was financially supported by the Research Council of Norway and by NORDITA.
Two-component membrane material properties and domain formation from dissipative particle dynamics.
Illya, G; Lipowsky, R; Shillcock, J C
2006-09-21
The material parameters (area stretch modulus and bending rigidity) of two-component amphiphilic membranes are determined from dissipative particle dynamics simulations. The preferred area per molecule for each species is varied so as to produce homogeneous mixtures or nonhomogeneous mixtures that form domains. If the latter mixtures are composed of amphiphiles with the same tail length, but different preferred areas per molecule, their material parameters increase monotonically as a function of composition. By contrast, mixtures of amphiphiles that differ in both tail length and preferred area per molecule form both homogeneous and nonhomogeneous mixtures that both exhibit smaller values of their material properties compared to the corresponding pure systems. When the same nonhomogeneous mixtures of amphiphiles are assembled into planar membrane patches and vesicles, the resulting domain shapes are different when the bending rigidities of the domains are sufficiently different. Additionally, both bilayer and monolayer domains are observed in vesicles. We conclude that the evolution of the domain shapes is influenced by the high curvature of the vesicles in the simulation, a result that may be relevant for biological vesicle membranes.
P2CS: a two-component system resource for prokaryotic signal transduction research
Directory of Open Access Journals (Sweden)
Méjean Vincent
2009-07-01
Full Text Available Abstract Background With the escalation of high throughput prokaryotic genome sequencing, there is an ever-increasing need for databases that characterise, catalogue and present data relating to particular gene sets and genomes/metagenomes. Two-component system (TCS signal transduction pathways are the dominant mechanisms by which micro-organisms sense and respond to external as well as internal environmental changes. These systems respond to a wide range of stimuli by triggering diverse physiological adjustments, including alterations in gene expression, enzymatic reactions, or protein-protein interactions. Description We present P2CS (Prokaryotic 2-Component Systems, an integrated and comprehensive database of TCS signal transduction proteins, which contains a compilation of the TCS genes within 755 completely sequenced prokaryotic genomes and 39 metagenomes. P2CS provides detailed annotation of each TCS gene including family classification, sequence features, functional domains, as well as genomic context visualization. To bypass the generic problem of gene underestimation during genome annotation, we also constituted and searched an ORFeome, which improves the recovery of TCS proteins compared to searches on the equivalent proteomes. Conclusion P2CS has been developed for computational analysis of the modular TCSs of prokaryotic genomes and metagenomes. It provides a complete overview of information on TCSs, including predicted candidate proteins and probable proteins, which need further curation/validation. The database can be browsed and queried with a user-friendly web interface at http://www.p2cs.org/.
Monedero, Vicente; Revilla-Guarinos, Ainhoa; Zúñiga, Manuel
2017-01-01
Two-component systems (TCSs) are widespread signal transduction pathways mainly found in bacteria where they play a major role in adaptation to changing environmental conditions. TCSs generally consist of sensor histidine kinases that autophosphorylate in response to a specific stimulus and subsequently transfer the phosphate group to their cognate response regulators thus modulating their activity, usually as transcriptional regulators. In this review we present the current knowledge on the physiological role of TCSs in species of the families Lactobacillaceae and Leuconostocaceae of the group of lactic acid bacteria (LAB). LAB are microorganisms of great relevance for health and food production as the group spans from starter organisms to pathogens. Whereas the role of TCSs in pathogenic LAB (most of them belonging to the family Streptococcaceae) has focused the attention, the roles of TCSs in commensal LAB, such as most species of Lactobacillaceae and Leuconostocaceae, have been somewhat neglected. However, evidence available indicates that TCSs are key players in the regulation of the physiology of these bacteria. The first studies in food-associated LAB showed the involvement of some TCSs in quorum sensing and production of bacteriocins, but subsequent studies have shown that TCSs participate in other physiological processes, such as stress response, regulation of nitrogen metabolism, regulation of malate metabolism, and resistance to antimicrobial peptides, among others. Copyright © 2017 Elsevier Inc. All rights reserved.
The Role of Two-Component Signal Transduction Systems in Staphylococcus aureus Virulence Regulation.
Haag, Andreas F; Bagnoli, Fabio
2016-01-05
Staphylococcus aureus is a versatile, opportunistic human pathogen that can asymptomatically colonize a human host but can also cause a variety of cutaneous and systemic infections. The ability of S. aureus to adapt to such diverse environments is reflected in the presence of complex regulatory networks fine-tuning metabolic and virulence gene expression. One of the most widely distributed mechanisms is the two-component signal transduction system (TCS) which allows a pathogen to alter its gene expression profile in response to environmental stimuli. The simpler TCSs consist of only a transmembrane histidine kinase (HK) and a cytosolic response regulator. S. aureus encodes a total of 16 conserved pairs of TCSs that are involved in diverse signalling cascades ranging from global virulence gene regulation (e.g. quorum sensing by the Agr system), the bacterial response to antimicrobial agents, cell wall metabolism, respiration and nutrient sensing. These regulatory circuits are often interconnected and affect each other's expression, thus fine-tuning staphylococcal gene regulation. This manuscript gives an overview of the current knowledge of staphylococcal environmental sensing by TCS and its influence on virulence gene expression and virulence itself. Understanding bacterial gene regulation by TCS can give major insights into staphylococcal pathogenicity and has important implications for knowledge-based drug design and vaccine formulation.
Directory of Open Access Journals (Sweden)
Alisha Dhiman
2014-01-01
Full Text Available Two-component signal transduction systems (TCS, consisting of a sensor histidine protein kinase and its cognate response regulator, are an important mode of environmental sensing in bacteria. Additionally, they have been found to regulate virulence determinants in several pathogens. Bacillus anthracis, the causative agent of anthrax and a bioterrorism agent, harbours 41 pairs of TCS. However, their role in its pathogenicity has remained largely unexplored. Here, we show that WalRK of B. anthracis forms a functional TCS which exhibits some species-specific functions. Biochemical studies showed that domain variants of WalK, the histidine kinase, exhibit classical properties of autophosphorylation and phosphotransfer to its cognate response regulator WalR. Interestingly, these domain variants also show phosphatase activity towards phosphorylated WalR, thereby making WalK a bifunctional histidine kinase/phosphatase. An in silico regulon determination approach, using a consensus binding sequence from Bacillus subtilis, provided a list of 30 genes that could form a putative WalR regulon in B. anthracis. Further, electrophoretic mobility shift assay was used to show direct binding of purified WalR to the upstream regions of three putative regulon candidates, an S-layer protein EA1, a cell division ABC transporter FtsE and a sporulation histidine kinase KinB3. Our work lends insight into the species-specific functions and mode of action of B. anthracis WalRK.
Directory of Open Access Journals (Sweden)
Eric Alm
2006-11-01
Full Text Available Two-component systems including histidine protein kinases represent the primary signal transduction paradigm in prokaryotic organisms. To understand how these systems adapt to allow organisms to detect niche-specific signals, we analyzed the phylogenetic distribution of nearly 5,000 histidine protein kinases from 207 sequenced prokaryotic genomes. We found that many genomes carry a large repertoire of recently evolved signaling genes, which may reflect selective pressure to adapt to new environmental conditions. Both lineage-specific gene family expansion and horizontal gene transfer play major roles in the introduction of new histidine kinases into genomes; however, there are differences in how these two evolutionary forces act. Genes imported via horizontal transfer are more likely to retain their original functionality as inferred from a similar complement of signaling domains, while gene family expansion accompanied by domain shuffling appears to be a major source of novel genetic diversity. Family expansion is the dominant source of new histidine kinase genes in the genomes most enriched in signaling proteins, and detailed analysis reveals that divergence in domain structure and changes in expression patterns are hallmarks of recent expansions. Finally, while these two modes of gene acquisition are widespread across bacterial taxa, there are clear species-specific preferences for which mode is used.
Dhiman, Alisha; Bhatnagar, Sonika; Kulshreshtha, Parul; Bhatnagar, Rakesh
2014-01-01
Two-component signal transduction systems (TCS), consisting of a sensor histidine protein kinase and its cognate response regulator, are an important mode of environmental sensing in bacteria. Additionally, they have been found to regulate virulence determinants in several pathogens. Bacillus anthracis, the causative agent of anthrax and a bioterrorism agent, harbours 41 pairs of TCS. However, their role in its pathogenicity has remained largely unexplored. Here, we show that WalRK of B. anthracis forms a functional TCS which exhibits some species-specific functions. Biochemical studies showed that domain variants of WalK, the histidine kinase, exhibit classical properties of autophosphorylation and phosphotransfer to its cognate response regulator WalR. Interestingly, these domain variants also show phosphatase activity towards phosphorylated WalR, thereby making WalK a bifunctional histidine kinase/phosphatase. An in silico regulon determination approach, using a consensus binding sequence from Bacillus subtilis, provided a list of 30 genes that could form a putative WalR regulon in B. anthracis. Further, electrophoretic mobility shift assay was used to show direct binding of purified WalR to the upstream regions of three putative regulon candidates, an S-layer protein EA1, a cell division ABC transporter FtsE and a sporulation histidine kinase KinB3. Our work lends insight into the species-specific functions and mode of action of B. anthracis WalRK.
[Two-component signal transduction as attractive drug targets in pathogenic bacteria].
Utsumi, Ryutaro; Igarashi, Masayuki
2012-01-01
Gene clusters contributing to processes such as cell growth and pathogenicity are often controlled by two-component signal transduction systems (TCSs). TCS consists of a histidine kinase (HK) and a response regulator (RR). TCSs are attractive as drug targets for antimicrobials because many HK and RR genes are coded on the bacterial genome though few are found in lower eukaryotes. The HK/RR signal transduction system is distinct from serine/threonine and tyrosine phosphorylation in higher eukaryotes. Specific inhibitors against TCS systems work differently from conventional antibiotics, and developing them into new drugs that are effective against various drug-resistant bacteria may be possible. Furthermore, inhibitors of TCSs that control virulence factors may reduce virulence without killing the pathogenic bacteria. Previous TCS inhibitors targeting the kinase domain of the histidine kinase sensor suffered from poor selectivity. Recent TCS inhibitors, however, target the sensory domains of the sensors blocking the quorum sensing system, or target the essential response regulator. These new targets are introduced, together with several specific TCSs that have the potential to serve as effective drug targets.
P2CS: a two-component system resource for prokaryotic signal transduction research.
Barakat, Mohamed; Ortet, Philippe; Jourlin-Castelli, Cécile; Ansaldi, Mireille; Méjean, Vincent; Whitworth, David E
2009-07-15
With the escalation of high throughput prokaryotic genome sequencing, there is an ever-increasing need for databases that characterise, catalogue and present data relating to particular gene sets and genomes/metagenomes. Two-component system (TCS) signal transduction pathways are the dominant mechanisms by which micro-organisms sense and respond to external as well as internal environmental changes. These systems respond to a wide range of stimuli by triggering diverse physiological adjustments, including alterations in gene expression, enzymatic reactions, or protein-protein interactions. We present P2CS (Prokaryotic 2-Component Systems), an integrated and comprehensive database of TCS signal transduction proteins, which contains a compilation of the TCS genes within 755 completely sequenced prokaryotic genomes and 39 metagenomes. P2CS provides detailed annotation of each TCS gene including family classification, sequence features, functional domains, as well as genomic context visualization. To bypass the generic problem of gene underestimation during genome annotation, we also constituted and searched an ORFeome, which improves the recovery of TCS proteins compared to searches on the equivalent proteomes. P2CS has been developed for computational analysis of the modular TCSs of prokaryotic genomes and metagenomes. It provides a complete overview of information on TCSs, including predicted candidate proteins and probable proteins, which need further curation/validation. The database can be browsed and queried with a user-friendly web interface at http://www.p2cs.org/.
Yu, Shuijing; Peng, Yanping; Chen, Wanyi; Deng, Yangwu; Guo, Yanhua
2014-09-01
Lactobacillus casei has traditionally been recognized as a probiotic, thus needing to survive the industrial production processes and transit through the gastrointestinal tract before providing benefit to human health. The two-component signal transduction system (TCS) plays important roles in sensing and reacting to environmental changes, which consists of a histidine kinase (HK) and a response regulator (RR). In this study we identified HKs and RRs of six sequenced L. casei strains. Ortholog analysis revealed 15 TCS clusters (HK-RR pairs), one orphan HKs and three orphan RRs, of which 12 TCS clusters were common to all six strains, three were absent in one strain. Further classification of the predicted HKs and RRs revealed interesting aspects of their putative functions. Some TCS clusters are involved with the response under the stress of the bile salts, acid, or oxidative, which contribute to survive the difficult journey through the human gastrointestinal tract. Computational predictions of 15 TCSs were verified by PCR experiments. This genomic level study of TCSs should provide valuable insights into the conservation and divergence of TCS proteins in the L. casei strains.
Hiscox, Thomas J; Ohtani, Kaori; Shimizu, Tohru; Cheung, Jackie K; Rood, Julian I
2014-12-01
Clostridium perfringens is a Gram-positive rod that is widely distributed in nature and is the etiological agent of several human and animal diseases. The complete genome sequence of C. perfringens strain 13 has been determined and multiple two-component signal transduction systems identified. One of these systems, designated here as the MalNO system, was analyzed in this study. Microarray analysis was used to carry out functional analysis of a malO mutant. The results, which were confirmed by quantitative reverse-transcriptase PCR, indicated that genes putatively involved in the uptake and metabolism of maltose were up-regulated in the malO mutant. These effects were reversed by complementation with the wild-type malO gene. Growth of these isogenic strains in medium with and without maltose showed that the malO mutant recovered more quickly from maltose deprivation when compared to the wild-type and complemented strains, leading to the conclusion that the MalNO system regulates maltose utilization in C. perfringens. It is postulated that this regulatory network may allow this soil bacterium and opportunistic pathogen to respond to environmental conditions where there are higher concentrations of maltose or maltodextrins, such as in the presence of decaying plant material in rich soil. Copyright © 2014 Elsevier Ltd. All rights reserved.
Bretl, Daniel J; Demetriadou, Chrystalla; Zahrt, Thomas C
2011-12-01
Pathogenic microorganisms encounter a variety of environmental stresses following infection of their respective hosts. Mycobacterium tuberculosis, the etiological agent of tuberculosis, is an unusual bacterial pathogen in that it is able to establish lifelong infections in individuals within granulomatous lesions that are formed following a productive immune response. Adaptation to this highly dynamic environment is thought to be mediated primarily through transcriptional reprogramming initiated in response to recognition of stimuli, including low-oxygen tension, nutrient depletion, reactive oxygen and nitrogen species, altered pH, toxic lipid moieties, cell wall/cell membrane-perturbing agents, and other environmental cues. To survive continued exposure to these potentially adverse factors, M. tuberculosis encodes a variety of regulatory factors, including 11 complete two-component signal transduction systems (TCSSs) and several orphaned response regulators (RRs) and sensor kinases (SKs). This report reviews our current knowledge of the TCSSs present in M. tuberculosis. In particular, we discuss the biochemical and functional characteristics of individual RRs and SKs, the environmental stimuli regulating their activation, the regulons controlled by the various TCSSs, and the known or postulated role(s) of individual TCSSs in the context of M. tuberculosis physiology and/or pathogenesis.
The Formation of Bulges, Discs and Two Component Galaxies in the CANDELS Survey at z < 3
Margalef-Bentabol, Berta; Mortlock, Alice; Hartley, Will; Duncan, Kenneth; Ferguson, Harry C; Koekemoer, Anton M; Dekel, Avishai; Primack, Joel R
2016-01-01
We examine a sample of 1495 galaxies in the CANDELS fields to determine the evolution of two component galaxies, including bulges and discs, within massive galaxies at the epoch 1 < z < 3 when the Hubble sequence forms. We fit all of our galaxies' light profiles with a single S\\'ersic fit, as well as with a combination of exponential and S\\'ersic profiles. The latter is done in order to describe a galaxy with an inner and an outer component, or bulge and disc component. We develop and use three classification methods (visual, F-test and the RFF) to separate our sample into 1-component galaxies (disc/spheroids-like galaxies) and 2-component galaxies (galaxies formed by an 'inner part' or bulge and an 'outer part' or disc). We then compare the results from using these three different ways to classify our galaxies. We find that the fraction of galaxies selected as 2-component galaxies increases on average 50 per cent from the lowest mass bin to the most massive galaxies, and decreases with redshift by a fa...
Packing characteristics of two-component bilayers composed of ester- and ether-linked phospholipids.
Batenjany, M M; O'Leary, T J; Levin, I W; Mason, J T
1997-01-01
The miscibility properties of ether- and ester-linked phospholipids in two-component, fully hydrated bilayers have been studied by differential scanning calorimetry (DSC) and Raman spectroscopy. Mixtures of 1,2-di-O-hexadecyl-rac-glycero-3-phosphocholine (DHPC) with 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DHPE) and of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) with 1,2-di-O-hexadecyl-sn-glycero-3-phosphoethanolamine (DHPE) have been investigated. The phase diagram for the DPPC/DHPE mixtures indicates that these two phospholipids are miscible in all proportions in the nonrippled bilayer gel phase. In contrast, the DHPC/DPPE mixtures display two regions of gel phase immiscibility between 10 and 30 mol% DPPE. Raman spectroscopic measurements of DHPC/DPPE mixtures in the C-H stretching mode region suggest that this immiscibility arises from the formation of DHPC-rich interdigitated gel phase domains with strong lateral chain packing interactions at temperatures below 27 degrees C. However, in the absence of interdigitation, our findings, and those of others, lead to the conclusion that the miscibility properties of mixtures of ether- and ester-linked phospholipids are determined by the nature of the phospholipid headgroups and are independent of the character of the hydrocarbon chain linkages. Thus it seems unlikely that the ether linkage has any significant effect on the miscibility properties of phospholipids in biological membranes. PMID:9083673
Vapour-mediated sensing and motility in two-component droplets
Cira, N. J.; Benusiglio, A.; Prakash, M.
2015-03-01
Controlling the wetting behaviour of liquids on surfaces is important for a variety of industrial applications such as water-repellent coatings and lubrication. Liquid behaviour on a surface can range from complete spreading, as in the `tears of wine' effect, to minimal wetting as observed on a superhydrophobic lotus leaf. Controlling droplet movement is important in microfluidic liquid handling, on self-cleaning surfaces and in heat transfer. Droplet motion can be achieved by gradients of surface energy. However, existing techniques require either a large gradient or a carefully prepared surface to overcome the effects of contact line pinning, which usually limit droplet motion. Here we show that two-component droplets of well-chosen miscible liquids such as propylene glycol and water deposited on clean glass are not subject to pinning and cause the motion of neighbouring droplets over a distance. Unlike the canonical predictions for these liquids on a high-energy surface, these droplets do not spread completely but exhibit an apparent contact angle. We demonstrate experimentally and analytically that these droplets are stabilized by evaporation-induced surface tension gradients and that they move in response to the vapour emitted by neighbouring droplets. Our fundamental understanding of this robust system enabled us to construct a wide variety of autonomous fluidic machines out of everyday materials.
Impact of backmixing of the aqueous phase on two-component rare earth separation process
Institute of Scientific and Technical Information of China (English)
WU Sheng; CHENG Fuxiang; LIAO Chunsheng; YAN Chunhua
2013-01-01
Solvent extraction based on mixer-settler is the major industrial method of rare earth (RE) separation.In the mixer-settler extraction process,due to the insufficient settling time in normal circumstances,backmixing of the aqueous phase could have significant impact on the process of RE extraction separation.Therefore on the basis of the extraction equilibrium and mass balance of the mixer-settler extraction process,here we developed a mathematic expression of the aqueous phase backmixing in a two-component separation process,and obtained a quantitative analysis of the backmixing effect on the purification process by the approximations according to certain hypotheses.Two extraction systems of La/Ce and Pr/Nd separation were chosen as the examples to analyze the backmixing effect,and the results showed that the aqueous backmixing had greater influence in the scrubbing segment than in the extraction segment,especially in the system with a high separation factor such as La/Ce separation.Therefore it was suggested that the aqueous backmixing effect should be well attended in the design and application of RE extraction separation.
A hybrid two-component system protein from Azospirillum brasilense Sp7 was involved in chemotaxis.
Cui, Yanhua; Tu, Ran; Wu, Lixian; Hong, Yuanyuan; Chen, Sanfeng
2011-09-20
We here report the sequence and functional analysis of org35 of Azospirillum brasilense Sp7, which was originally identified to be able to interact with NifA in yeast-two-hybrid system. The org35 encodes a hybrid two-component system protein, including N-terminal PAS domains, a histidine kinase (HPK) domain and a response regulator (RR) domain in C-terminal. To determine the function of the Org35, a deletion-insertion mutant in PAS domain [named Sp7353] and a complemental strain Sp7353C were constructed. The mutant had reduced chemotaxis ability compared to that of wild-type, and the complemental strain was similar to the wild-type strain. These data suggested that the A. brasilense org35 played a key role in chemotaxis. Variants containing different domains of the org35 were expressed, and the functions of these domains were studied in vitro. Phosphorylation assays in vitro demonstrated that the HPK domain of Org35 possessed the autokinase activity and that the phosphorylated HPK was able to transfer phosphate groups to the RR domain. The result indicated Org35 was a phosphorylation-communicating protein.
Shen, Xueqin; Yan, Hui; Yan, Weili; Guo, Lei
2007-01-01
In this paper, we introduce multidimensional support vector regression (MSVR) with iterative re-weight least square (IRWLS) based procedure to estimating the regional conductivity in 2D disc head model. The results show that the method is capable of determining for the regional location of the disturbed conductivity in the 2D disc head model with single tissue and estimating for the tissue conductivities in the 2D disc head model with four kinds of tissue. The estimation errors are all within a few percent.
DPL Model Analysis of Non-Fourier Heat Conduction Restricted by Continuous Boundary Interface
Institute of Scientific and Technical Information of China (English)
Jiang Fangming; Liu Dengying
2001-01-01
Dual-phase lag (DPL) model is used to describe the non-Fourier heat conduction in a finite medium where the boundary at x=-0 is heated by a rectangular pulsed energy source and the other boundary is tightly contacted with another medium and satisfies the continuous boundary condition. Numerical solution of this kind of. non-Fourier heat conduction is presented in this paper. The results are compared with those predicted by the hyperbolic heat conduction (HHC) equation.
Normal thermal conduction in lattice models with asymmetric harmonic interparticle interactions
Institute of Scientific and Technical Information of China (English)
Zhong Yi; Zhang Yong; Wang Jiao; Zhao Hong
2013-01-01
We study the thermal conduction behaviors of one-dimensional lattice models with asymmetric harmonic interparticle interactions.Normal thermal conductivity that is independent of system size is observed when the lattice chains are long enough.Because only the harmonic interactions are involved,the result confirms,without ambiguity,that asymmetry plays a key role in normal thermal conduction in one-dimensional momentum conserving lattices.Both equilibrium and nonequilibrium simulations are performed to support the conclusion.
A Fractal Model for the Effective Thermal Conductivity of Granular Flow with Non-uniform Particles
Institute of Scientific and Technical Information of China (English)
ZHANG Duan-Ming; LEI Ya-Jie; YU Bo-Ming; ZHANG Mei-Jun; HUANG Ming-Tao; LI Zhi-Hua; GUAN Li
2002-01-01
The equipartition of energy applied in binary mixture of granular flow is extended to granular flow withnon-uniform particles. Based on the fractal characteristic of granular flow with non-uniform particles as well as energyequipartition, a fractal velocity distribution function and a fractal model of effective thermal conductivity are derived.Thermal conduction resulted from motions of particles in the granular flow, as well as the effect of fractal dimension oneffective thermal conductivity, is discussed.
Thermal Conductivity in Suspension Sprayed Thermal Barrier Coatings: Modeling and Experiments
Ganvir, Ashish; Kumara, Chamara; Gupta, Mohit; Nylen, Per
2016-12-01
Axial suspension plasma spraying (ASPS) can generate microstructures with higher porosity and pores in the size range from submicron to nanometer. ASPS thermal barrier coatings (TBC) have already shown a great potential to produce low thermal conductivity coatings for gas turbine applications. It is important to understand the fundamental relationships between microstructural defects in ASPS coatings such as crystallite boundaries, porosity etc. and thermal conductivity. Object-oriented finite element (OOF) analysis has been shown as an effective tool for evaluating thermal conductivity of conventional TBCs as this method is capable of incorporating the inherent microstructure in the model. The objective of this work was to analyze the thermal conductivity of ASPS TBCs using experimental techniques and also to evaluate a procedure where OOF can be used to predict and analyze the thermal conductivity for these coatings. Verification of the model was done by comparing modeling results with the experimental thermal conductivity. The results showed that the varied scaled porosity has a significant influence on the thermal conductivity. Smaller crystallites and higher overall porosity content resulted in lower thermal conductivity. It was shown that OOF could be a powerful tool to predict and rank thermal conductivity of ASPS TBCs.
Thermal Conductivity in Suspension Sprayed Thermal Barrier Coatings: Modeling and Experiments
Ganvir, Ashish; Kumara, Chamara; Gupta, Mohit; Nylen, Per
2017-01-01
Axial suspension plasma spraying (ASPS) can generate microstructures with higher porosity and pores in the size range from submicron to nanometer. ASPS thermal barrier coatings (TBC) have already shown a great potential to produce low thermal conductivity coatings for gas turbine applications. It is important to understand the fundamental relationships between microstructural defects in ASPS coatings such as crystallite boundaries, porosity etc. and thermal conductivity. Object-oriented finite element (OOF) analysis has been shown as an effective tool for evaluating thermal conductivity of conventional TBCs as this method is capable of incorporating the inherent microstructure in the model. The objective of this work was to analyze the thermal conductivity of ASPS TBCs using experimental techniques and also to evaluate a procedure where OOF can be used to predict and analyze the thermal conductivity for these coatings. Verification of the model was done by comparing modeling results with the experimental thermal conductivity. The results showed that the varied scaled porosity has a significant influence on the thermal conductivity. Smaller crystallites and higher overall porosity content resulted in lower thermal conductivity. It was shown that OOF could be a powerful tool to predict and rank thermal conductivity of ASPS TBCs.
Effects of external magnetic trap on two dark solitons of a two-component Bose-Einstein condensate
Institute of Scientific and Technical Information of China (English)
Hong Li; D. N. Wang
2008-01-01
Two dark solitons are considered in a two-component Bose-Einstein condensate with an external magnetic trap, and effects of the trap potential on their dynamics are investigated by the numerical simulation. The results show that the dark solitons attract, collide and repel periodically in two components as time changes, the time period depends strictly on the initial condition and the potential, and there are obvious self-trapping effects on the two dark solitons.
Directory of Open Access Journals (Sweden)
Mark K. Ashby
2006-01-01
Full Text Available The publicly available annotated archaeal genome sequences (23 complete and three partial annotations, October 2005 were searched for the presence of potential two-component open reading frames (ORFs using gene category lists and BLASTP. A total of 489 potential two-component genes were identified from the gene category lists and BLASTP. Two-component genes were found in 14 of the 21 Euryarchaeal sequences (October 2005 and in neither the Crenarchaeota nor the Nanoarchaeota. A total of 20 predicted protein domains were identified in the putative two-component ORFs that, in addition to the histidine kinase and receiver domains, also includes sensor and signalling domains. The detailed structure of these putative proteins is shown, as is the distribution of each class of two-component genes in each species. Potential members of orthologous groups have been identified, as have any potential operons containing two or more two-component genes. The number of two-component genes in those Euryarchaeal species which have them seems to be linked more to lifestyle and habitat than to genome complexity, with most examples being found in Methanospirillum hungatei, Haloarcula marismortui, Methanococcoides burtonii and the mesophilic Methanosarcinales group. The large numbers of two-component genes in these species may reflect a greater requirement for internal regulation. Phylogenetic analysis of orthologous groups of five different protein classes, three probably involved in regulating taxis, suggests that most of these ORFs have been inherited vertically from an ancestral Euryarchaeal species and point to a limited number of key horizontal gene transfer events.
Characterization and dynamic charge dependent modeling of conducting polymer trilayer bending
Farajollahi, Meisam; Sassani, Farrokh; Naserifar, Naser; Fannir, Adelyne; Plesse, Cédric; Nguyen, Giao T. M.; Vidal, Frédéric; Madden, John D. W.
2016-11-01
Trilayer bending actuators are charge driven devices that have the ability to function in air and provide large mechanical amplification. The electronic and mechanical properties of these actuators are known to be functions of their charge state making prediction of their responses more difficult when they operate over their full range of deformation. In this work, a combination of state space representation and a two-dimensional RC transmission line model are used to implement a nonlinear time variant model for conducting polymer-based trilayer actuators. Electrical conductivity and Young’s modulus of electromechanically active PEDOT conducting polymer containing films as a function of applied voltage were measured and incorporated into the model. A 16% drop in Young’s modulus and 24 times increase in conductivity are observed by oxidizing the PEDOT. A closed form formulation for radius of curvature of trilayer actuators considering asymmetric and location dependent Young’s modulus and conductivity in the conducting polymer layers is derived and implemented in the model. The nonlinear model shows the capability to predict the radius of curvature as a function of time and position with reasonable consistency (within 4%). The formulation is useful for general trilayer configurations to calculate the radius of curvature as a function of time. The proposed electrochemical modeling approach may also be useful for modeling energy storage devices.
DEFF Research Database (Denmark)
Zhu, Huayang; Ricote, Sandrine; Coors, W. Grover;
2014-01-01
A model-based approach is used to interpret equilibrium and transient conductivity measurements for 10% gadolinium-doped ceria: Ce0.9Gd0.1O1.95 − δ (GDC10). The measurements were carried out by AC impedance spectroscopy on slender extruded GDC10 rods. Although equilibrium conductivity measurements...
A fractal model for the effective thermal conductivity of nanoparticle suspensions
Institute of Scientific and Technical Information of China (English)
WANG Buxuan; ZHOU Leping; PENG Xiaofeng
2004-01-01
Extending the effective medium approximation with the fractal theory for describing nanoparticle clusters and their radius distribution, a predictive model is proposed for the effective thermal conductivity of nanoparticle suspension, combined with the consideration of size effect and surface adsorption effect of nanoparticles.The predicted effective thermal conductivity of nanoparticle suspension is consistent with experimental data in the dilute limit.
Electron and Ion Conductivity Calculations using the Model of Lee and More
Energy Technology Data Exchange (ETDEWEB)
Hayes, John C. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
2016-09-30
The following notes describe the ARES implementation of the inverse of the electron conduction coefficient, using the model of Lee and More, Physics of Fluids 27, page 1273, 1984. An addendum describing the modifications for analogous ion conduction coeffiecient appears at the bottom.
Azuchi, Fumika; Kinose, Yoshiyuki; Matsumura, Tomoe; Kanomata, Tomoaki; Uehara, Yui; Kobayashi, Ayumi; Yamaguchi, Masahiro; Izuta, Takeshi
2014-01-01
A multiplicative stomatal conductance model was constructed to estimate stomatal O3 uptake of Fagus crenata exposed to O3 under different N loads to the soil. Our stomatal conductance model included environmental functions such as the stomatal responses of F. crenata to diurnal changes, chronic O3 stress (AOT0), acute O3 stress (O3 concentration), and nitrogen load to soil. The model could explain 62% of the variability in stomatal conductance. We suggest therefore that stomatal closure induced by O3 and N load-induced soil acidification must be taken into account in developing a stomatal conductance model for estimating stomatal O3 uptake for future risk assessment of O3 impact on Japanese forest tree species such as F. crenata.
The Lattice and Thermal Radiation Conductivity of Thermal Barrier Coatings: Models and Experiments
Zhu, Dongming; Spuckler, Charles M.
2010-01-01
The lattice and radiation conductivity of ZrO2-Y2O3 thermal barrier coatings was evaluated using a laser heat flux approach. A diffusion model has been established to correlate the coating apparent thermal conductivity to the lattice and radiation conductivity. The radiation conductivity component can be expressed as a function of temperature, coating material scattering, and absorption properties. High temperature scattering and absorption of the coating systems can be also derived based on the testing results using the modeling approach. A comparison has been made for the gray and nongray coating models in the plasma-sprayed thermal barrier coatings. The model prediction is found to have a good agreement with experimental observations.
Feng, Bao-Feng; Maruno, Ken-ichi; Ohta, Yasuhiro
2017-02-01
In the present paper, we propose a two-component generalization of the reduced Ostrovsky (Vakhnenko) equation, whose differential form can be viewed as the short-wave limit of a two-component Degasperis-Procesi (DP) equation. They are integrable due to the existence of Lax pairs. Moreover, we have shown that the two-component reduced Ostrovsky equation can be reduced from an extended BKP hierarchy with negative flow through a pseudo 3-reduction and a hodograph (reciprocal) transform. As a by-product, its bilinear form and N-soliton solution in terms of pfaffians are presented. One- and two-soliton solutions are provided and analyzed. In the second part of the paper, we start with a modified BKP hierarchy, which is a Bäcklund transformation of the above extended BKP hierarchy, an integrable semi-discrete analogue of the two-component reduced Ostrovsky equation is constructed by defining an appropriate discrete hodograph transform and dependent variable transformations. In particular, the backward difference form of above semi-discrete two-component reduced Ostrovsky equation gives rise to the integrable semi-discretization of the short wave limit of a two-component DP equation. Their N-soliton solutions in terms of pffafians are also provided.
Transcriptome analysis of the Brucella abortus BvrR/BvrS two-component regulatory system.
Directory of Open Access Journals (Sweden)
Cristina Viadas
Full Text Available BACKGROUND: The two-component BvrR/BvrS system is essential for Brucella abortus virulence. It was shown previously that its dysfunction alters the expression of some major outer membrane proteins and the pattern of lipid A acylation. To determine the genes regulated by BvrR/BvrS, we performed a whole-genome microarray analysis using B. abortus RNA obtained from wild type and bvrR mutant cells grown in the same conditions. METHODOLOGY/PRINCIPAL FINDINGS: A total of 127 differentially expressed genes were found: 83 were over expressed and 44 were less expressed in the bvrR mutant. Two operons, the phosphotransferase system and the maltose transport system, were down-regulated. Several genes involved in cell envelope or outer membrane biogenesis were differentially expressed: genes for outer membrane proteins (omp25a, omp25d, lipoproteins, LPS and fatty acid biosynthesis, stress response proteins, chaperones, flagellar genes, and twelve genes encoding ABC transport systems. Ten genes related with carbon metabolism (pckA and fumB among others were up-regulated in the bvrR mutant, and denitrification genes (nirK, norC and nosZ were also regulated. Notably, seven transcriptional regulators were affected, including VjbR, ExoR and OmpR that were less expressed in the bvrR mutant. Finally, the expression of eleven genes which have been previously related with Brucella virulence was also altered. CONCLUSIONS/SIGNIFICANCE: All these data corroborate the impact of BvrR/BvrS on cell envelope modulation, confirm that this system controls the carbon and nitrogen metabolism, and suggest a cross-talk among some regulators to adjust the Brucella physiology to the shift expected to occur during the transit from the extracellular to the intracellular niche.
Energy Technology Data Exchange (ETDEWEB)
Nohaile, M J [Univ. of California, Berkeley, CA (United States). Dept. of Chemistry
1996-05-01
Multidimensional heteronuclear NMR spectroscopy was used to investigate the N-terminal domain of the transcriptional enhancer NTRC (NiTrogen Regulatory protein C). This domain belongs to the family of receiver domains of two-component regulatory systems involved in signal transduction. Phosphorylation of NTRC at D54 leads to an activated form of the molecule which stimulates transcription of genes involved in nitrogen regulation. Three and four dimensional NMR techniques were used to determine an intermediate resolution structure of the unphosphorylated, inactive form of the N-terminal domain of NTRC. The structure is comprised of five {alpha}-helices and a five-stranded {beta}-sheet in a ({beta}/{alpha}){sub 5} topology. Analysis of the backbone dynamics of NTRC indicate that helix 4 and strand 5 are significantly more flexible than the rest of the secondary structure of the protein and that the loops making up the active site are flexible. The short lifetime of phospho-NTRC hampers the study of this form. However, conditions for determining the resonance assignments and, possibly, the three dimensional structure of phosphorylated NTRC have been obtained. Tentative assignments of the phosphorylated form indicate that the majority of the changes that NTRC experiences upon phosphorylation occur in helix 3, strand 4, helix 4, strand 5, and the loop between strand 5 and helix 5 (the 3445 face of NTRC) as well as near the site of phosphorylation. In order to examine a stable, activated form of the protein, constitutively active mutants of NTRC were investigated.
Low temperatures shear viscosity of a two-component dipolar Fermi gas with unequal population
Darsheshdar, E.; Yavari, H.; Zangeneh, Z.
2016-07-01
By using the Green's functions method and linear response theory we calculate the shear viscosity of a two-component dipolar Fermi gas with population imbalance (spin polarized) in the low temperatures limit. In the strong-coupling Bose-Einstein condensation (BEC) region where a Feshbach resonance gives rise to tightly bound dimer molecules, a spin-polarized Fermi superfluid reduces to a simple Bose-Fermi mixture of Bose-condensed dimers and the leftover unpaired fermions (atoms). The interactions between dimer-atom, dimer-dimer, and atom-atom take into account to the viscous relaxation time (τη) . By evaluating the self-energies in the ladder approximation we determine the relaxation times due to dimer-atom (τDA) , dimer-dimer (τcDD ,τdDD) , and atom-atom (τAA) interactions. We will show that relaxation rates due to these interactions τDA-1 ,τcDD-1, τdDD-1, and τAA-1 have T2, T4, e - E /kB T (E is the spectrum of the dimer atoms), and T 3 / 2 behavior respectively in the low temperature limit (T → 0) and consequently, the atom-atom interaction plays the dominant role in the shear viscosity in this rang of temperatures. For small polarization (τDA ,τAA ≫τcDD ,τdDD), the low temperatures shear viscosity is determined by contact interaction between dimers and the shear viscosity varies as T-5 which has the same behavior as the viscosity of other superfluid systems such as superfluid neutron stars, and liquid helium.
Gene Regulation by the LiaSR Two-Component System in Streptococcus mutans.
Directory of Open Access Journals (Sweden)
Manoharan Shankar
Full Text Available The LiaSR two-component signal transduction system regulates cellular responses to several environmental stresses, including those that induce cell envelope damages. Downstream regulons of the LiaSR system have been implicated in tolerance to acid, antibiotics and detergents. In the dental pathogen Streptococcus mutans, the LiaSR system is necessary for tolerance against acid, antibiotics, and cell wall damaging stresses during growth in the oral cavity. To understand the molecular mechanisms by which LiaSR regulates gene expression, we created a mutant LiaR in which the conserved aspartic acid residue (the phosphorylation site, was changed to alanine residue (D58A. As expected, the LiaR-D58A variant was unable to acquire the phosphate group and bind to target promoters. We also noted that the predicted LiaR-binding motif upstream of the lia operon does not appear to be well conserved. Consistent with this observation, we found that LiaR was unable to bind to the promoter region of lia; however, we showed that LiaR was able to bind to the promoters of SMU.753, SMU.2084 and SMU.1727. Based on sequence analysis and DNA binding studies we proposed a new 25-bp conserved motif essential for LiaR binding. Introducing alterations at fully conserved positions in the 25-bp motif affected LiaR binding, and the binding was dependent on the combination of positions that were altered. By scanning the S. mutans genome for the occurrence of the newly defined LiaR binding motif, we identified the promoter of hrcA (encoding a key regulator of the heat shock response that contains a LiaR binding motif, and we showed that hrcA is negatively regulated by the LiaSR system. Taken together our results suggest a putative role of the LiaSR system in heat shock responses of S. mutans.
Signal integration by the two-component signal transduction response regulator CpxR.
Wolfe, Alan J; Parikh, Niyati; Lima, Bruno P; Zemaitaitis, Bozena
2008-04-01
The CpxAR two-component signal transduction system in Escherichia coli and other pathogens senses diverse envelope stresses and promotes the transcription of a variety of genes that remedy these stresses. An important member of the CpxAR regulon is cpxP. The CpxA-dependent transcription of cpxP has been linked to stresses such as misfolded proteins and alkaline pH. It also has been proposed that acetyl phosphate, the intermediate of the phosphotransacetylase (Pta)-acetate kinase (AckA) pathway, can activate the transcription of cpxP in a CpxA-independent manner by donating its phosphoryl group to CpxR. We tested this hypothesis by measuring the transcription of cpxP using mutants with mutations in the CpxAR pathway, mutants with mutations in the Pta-AckA pathway, and mutants with a combination of both types of mutations. From this epistasis analysis, we learned that CpxR integrates diverse stimuli. The stimuli that originate in the envelope depend on CpxA, while those associated with growth and central metabolism depend on the Pta-AckA pathway. While CpxR could receive a phosphoryl group from acetyl phosphate, this global signal was not the primary trigger for CpxR activation associated with the Pta-AckA pathway. On the strength of these results, we contend that the interactions between central metabolism and signal transduction can be quite complex and that successful investigations of such interactions must include a complete epistatic analysis.
Banerjee, Rahul; Yan, Honggao; Cukier, Robert I
2014-05-08
Signal transduction can be accomplished via a two-component system (TCS) consisting of a histidine kinase (HK) and a response regulator (RR). In this work, we simulate the response regulator RR468 from Thermotoga maritima, in which phosphorylation and dephosphorylation of a conserved aspartate residue acts as a switch via a large conformational change concentrated in three proximal loops. A detailed view of the conformational transition is obscured by the lack of stability of the intermediate states, which are difficult to detect using common structural biology techniques. Molecular dynamics (MD) trajectories of the inactive and active conformations were run, and show that the inactive (or active) trajectories do not exhibit sampling of the active (or inactive) conformations on this time scale. Targeted MD (TMD) was used to generate trajectories that span the inactive and active conformations and provide a view of how a localized event like phosphorylation can lead to conformational changes elsewhere in the protein, especially in the three proximal loops. The TMD trajectories are clustered to identify stages along the transition path. Residue interaction networks are identified that point to key residues having to rearrange in the process of transition. These are identified using both hydrogen bond analysis and residue interaction strength measurements. Potentials of mean force are generated for key residue rearrangements to ascertain their free energy barriers. We introduce methods that attempt to extrapolate from one conformation to the other and find that the most fluctuating proximal loop can transit part way from one to the other, suggesting that this conformational information is embedded in the sequence.
Imidazole as a Small Molecule Analogue in Two-Component Signal Transduction.
Page, Stephani C; Silversmith, Ruth E; Collins, Edward J; Bourret, Robert B
2015-12-15
In two-component signal transduction systems (TCSs), responses to stimuli are mediated through phosphotransfer between protein components. Canonical TCSs use His → Asp phosphotransfer in which phosphoryl groups are transferred from a conserved His on a sensory histidine kinase (HK) to a conserved Asp on a response regulator (RR). RRs contain the catalytic core of His → Asp phosphotransfer, evidenced by the ability of RRs to autophosphorylate with small molecule analogues of phospho-His proteins. Phosphorelays are a more complex variation of TCSs that additionally utilize Asp → His phosphotransfer through the use of an additional component, the histidine-containing phosphotransfer domain (Hpt), which reacts with RRs both as phosphodonors and phosphoacceptors. Here we show that imidazole has features of a rudimentary Hpt. Imidazole acted as a nucleophile and attacked phosphorylated RRs (RR-P) to produce monophosphoimidazole (MPI) and unphosphorylated RR. Phosphotransfer from RR-P to imidazole required the intact RR active site, indicating that the RR provided the core catalytic machinery for Asp → His phosphotransfer. Imidazole functioned in an artificial phosphorelay to transfer phosphoryl groups between unrelated RRs. The X-ray crystal structure of an activated RR·imidazole complex showed imidazole oriented in the RR active site similarly to the His of an Hpt. Imidazole interacted with RR nonconserved active site residues, which influenced the relative reactivity of RR-P with imidazole versus water. Rate constants for reaction of imidazole or MPI with chimeric RRs suggested that the RR active site contributes to the kinetic preferences exhibited by the YPD1 Hpt.
Energy Technology Data Exchange (ETDEWEB)
Nohaile, Michael James [Univ. of California, Berkeley, CA (United States). Dept. of Chemistry
1996-05-01
Multidimensional heteronuclear NMR spectroscopy was used to investigate the N-terminal domain of the transcriptional enhancer NTRC (NiTrogen Regulatory protein C). This domain belongs to the family of receiver domains of two-component regulatory systems involved in signal transduction. Phosphorylation of NTRC at D54 leads to an activated form of the molecule which stimulates transcription of genes involved in nitrogen regulation. Three and four dimensional NMR techniques were used to determine an intermediate resolution structure of the unphosphorylated, inactive form of the N-terminal domain of NTRC. The structure is comprised of five α-helices and a five-stranded β-sheet in a (β/α)_{5} topology. Analysis of the backbone dynamics of NTRC indicate that helix 4 and strand 5 are significantly more flexible than the rest of the secondary structure of the protein and that the loops making up the active site are flexible. The short lifetime of phospho-NTRC hampers the study of this form. However, conditions for determining the resonance assignments and, possibly, the three dimensional structure of phosphorylated NTRC have been obtained. Tentative assignments of the phosphorylated form indicate that the majority of the changes that NTRC experiences upon phosphorylation occur in helix 3, strand 4, helix 4, strand 5, and the loop between strand 5 and helix 5 (the 3445 face of NTRC) as well as near the site of phosphorylation. In order to examine a stable, activated form of the protein, constitutively active mutants of NTRC were investigated.
Perturbative treatment of spin-orbit coupling within spin-free exact two-component theory
Energy Technology Data Exchange (ETDEWEB)
Cheng, Lan, E-mail: chenglanster@gmail.com [Institute for Theoretical Chemistry, Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712 (United States); Gauss, Jürgen, E-mail: gauss@uni-mainz.de [Institut für Physikalische Chemie, Universität Mainz, D-55099 Mainz (Germany)
2014-10-28
This work deals with the perturbative treatment of spin-orbit-coupling (SOC) effects within the spin-free exact two-component theory in its one-electron variant (SFX2C-1e). We investigate two schemes for constructing the SFX2C-1e SOC matrix: the SFX2C-1e+SOC [der] scheme defines the SOC matrix elements based on SFX2C-1e analytic-derivative theory, hereby treating the SOC integrals as the perturbation; the SFX2C-1e+SOC [fd] scheme takes the difference between the X2C-1e and SFX2C-1e Hamiltonian matrices as the SOC perturbation. Furthermore, a mean-field approach in the SFX2C-1e framework is formulated and implemented to efficiently include two-electron SOC effects. Systematic approximations to the two-electron SOC integrals are also proposed and carefully assessed. Based on benchmark calculations of the second-order SOC corrections to the energies and electrical properties for a set of diatomic molecules, we show that the SFX2C-1e+SOC [der] scheme performs very well in the computation of perturbative SOC corrections and that the “2eSL” scheme, which neglects the (SS|SS)-type two-electron SOC integrals, is both efficient and accurate. In contrast, the SFX2C-1e+SOC [fd] scheme turns out to be incompatible with a perturbative treatment of SOC effects. Finally, as a first chemical application, we report high-accuracy calculations of the {sup 201}Hg quadrupole-coupling parameters of the recently characterized ethylmercury hydride (HHgCH{sub 2}CH{sub 3}) molecule based on SFX2C-1e coupled-cluster calculations augmented with second-order SOC corrections obtained at the Hartree-Fock level using the SFX2C-1e+SOC [der]/2eSL scheme.
A Fractal Model for the Transverse Thermal Dispersion Conductivity in Porous Media
Institute of Scientific and Technical Information of China (English)
郁伯铭; 李建华
2004-01-01
A quasi-analytical model, i.e. the fractal model, for the transverse thermal dispersion conductivity in porous media is presented based on the fractal characteristics of tortuous flow paths/streamlines in porous media. The fractal dimension of tortuous flow paths, the spatial deviation velocity and the transverse thermal dispersion conductivity are derived. The proposed model is expressed as functions of the fractal dimension of tortuous flow paths/streamlines, Peclet number, porosity and structural parameters. The present results are compared with those from the existing correlation, and good agreement is found between the present model predictions and those from the existing correlation.
Fu, Zhen-Guo; Wang, Zhigang; Li, Meng-Lei; Li, Da-Fang; Kang, Wei; Zhang, Ping
2016-12-01
The energy loss of multi-MeV charged particles moving in two-component warm dense plasmas (WDPs) is studied theoretically beyond the random-phase approximation. The short-range correlations between particles are taken into account via dynamic local field corrections (DLFC) in a Mermin dielectric function for two-component plasmas. The mean ionization states are obtained by employing the detailed configuration accounting model. The Yukawa-type effective potential is used to derive the DLFC. Numerically, the DLFC are obtained via self-consistent iterative operations. We find that the DLFC are significant around the maximum of the stopping power. Furthermore, by using the two-component extended Mermin dielectric function model including the DLFC, the energy loss of a proton with an initial energy of ˜15 MeV passing through a WDP of beryllium with an electronic density around the solid value ne≈3 ×1023cm-3 and with temperature around ˜40 eV is estimated numerically. The numerical result is reasonably consistent with the experimental observations [A. B. Zylsta et al., Phys. Rev. Lett. 111, 215002 (2013), 10.1103/PhysRevLett.111.215002]. Our results show that the partial ionization and the dynamic properties should be of importance for the stopping of charged particles moving in the WDP.
Li, Lei; Jiang, Weihong; Lu, Yinhua
2017-09-15
Two-component systems (TCSs), the predominant signal transduction pathways employed by bacteria, play important roles in physiological metabolism in Streptomyces Here, a novel TCS, GluR-GluK (encoded by SCO5778-SCO5779), which is located divergently from the gluABCD operon encoding a glutamate uptake system, was identified as being involved in glutamate sensing and uptake as well as antibiotic biosynthesis in Streptomyces coelicolor Under the condition of minimal medium (MM) supplemented with different concentrations of glutamate, deletion of the gluR-gluK operon (gluR-K) resulted in enhanced actinorhodin (ACT) but reduced undecylprodigiosin (RED) and yellow type I polyketide (yCPK) production, suggesting that GluR-GluK plays a differential role in antibiotic biosynthesis. Furthermore, we found that the response regulator GluR directly promotes the expression of gluABCD under the culture condition of MM with a high concentration of glutamate (75 mM). Using the biolayer interferometry assay, we demonstrated that glutamate acts as the direct signal of the histidine kinase GluK. It was therefore suggested that upon sensing high concentrations of glutamate, GluR-GluK would be activated and thereby facilitate glutamate uptake by increasing gluABCD expression. Finally, we demonstrated that the role of GluR-GluK in antibiotic biosynthesis is independent of its function in glutamate uptake. Considering the wide distribution of the glutamate-sensing (GluR-GluK) and uptake (GluABCD) module in actinobacteria, it could be concluded that the GluR-GluK signal transduction pathway involved in secondary metabolism and glutamate uptake should be highly conserved in this bacterial phylum.IMPORTANCE In this study, a novel two-component system (TCS), GluR-GluK, was identified to be involved in glutamate sensing and uptake as well as antibiotic biosynthesis in Streptomyces coelicolor A possible GluR-GluK working model was proposed. Upon sensing high glutamate concentrations (such as 75
Model technical and tactical training karate «game» manner of conducting a duel
Directory of Open Access Journals (Sweden)
Natalya Boychenko
2015-04-01
Full Text Available Purpose: optimization of technical and tactical training karate «gaming» the manner of conducting a duel. Material and Methods: analysis and compilation of scientific and methodological literature, interviews with coaches for shock combat sports, video analysis techniques, teacher observations. Results: the model of technical and tactical training karate «game» manner of conducting a duel. Selection was done complexes jobs matching techniques to improve athletes 'game' in the manner of conducting a duel «Kyokushin» karate. Conclusion: the model of technical and tactical training fighters "game" manner of conducting a duel, which reveals the particular combination technique karate style «Kyokushin». Selection was done complexes jobs matching techniques to improve athletes 'game' in the manner of conducting a duel «Kyokushin» karate, aimed at improving the combinations with the action on the response of the enemy.
Modeling of Thermal Conductivity of CVI-Densified Composites at Fiber and Bundle Level
Directory of Open Access Journals (Sweden)
Kang Guan
2016-12-01
Full Text Available The evolution of the thermal conductivities of the unidirectional, 2D woven and 3D braided composites during the CVI (chemical vapor infiltration process have been numerically studied by the finite element method. The results show that the dual-scale pores play an important role in the thermal conduction of the CVI-densified composites. According to our results, two thermal conductivity models applicable for CVI process have been developed. The sensitivity analysis demonstrates the parameter with the most influence on the CVI-densified composites’ thermal conductivity is matrix cracking’s density, followed by volume fraction of the bundle and thermal conductance of the matrix cracks, finally by micro-porosity inside the bundles and macro-porosity between the bundles. The obtained results are well consistent with the reported data, thus our models could be useful for designing the processing and performance of the CVI-densified composites.
A two-parameter nondiffusive heat conduction model for data analysis in pump-probe experiments
Ma, Yanbao
2014-12-01
Nondiffusive heat transfer has attracted intensive research interests in last 50 years because of its importance in fundamental physics and engineering applications. It has unique features that cannot be described by the Fourier law. However, current studies of nondiffusive heat transfer still focus on studying the effective thermal conductivity within the framework of the Fourier law due to a lack of a well-accepted replacement. Here, we show that nondiffusive heat conduction can be characterized by two inherent material properties: a diffusive thermal conductivity and a ballistic transport length. We also present a two-parameter heat conduction model and demonstrate its validity in different pump-probe experiments. This model not only offers new insights of nondiffusive heat conduction but also opens up new avenues for the studies of nondiffusive heat transfer outside the framework of the Fourier law.
Self-consistent modeling of terahertz waveguide and cavity with frequency-dependent conductivity
Huang, Y. J.; Chu, K. R.; Thumm, M.
2015-01-01
The surface resistance of metals, and hence the Ohmic dissipation per unit area, scales with the square root of the frequency of an incident electromagnetic wave. As is well recognized, this can lead to excessive wall losses at terahertz (THz) frequencies. On the other hand, high-frequency oscillatory motion of conduction electrons tends to mitigate the collisional damping. As a result, the classical theory predicts that metals behave more like a transparent medium at frequencies above the ultraviolet. Such a behavior difference is inherent in the AC conductivity, a frequency-dependent complex quantity commonly used to treat electromagnetics of metals at optical frequencies. The THz region falls in the gap between microwave and optical frequencies. However, metals are still commonly modeled by the DC conductivity in currently active vacuum electronics research aimed at the development of high-power THz sources (notably the gyrotron), although a small reduction of the DC conductivity due to surface roughness is sometimes included. In this study, we present a self-consistent modeling of the gyrotron interaction structures (a metallic waveguide or cavity) with the AC conductivity. The resulting waveguide attenuation constants and cavity quality factors are compared with those of the DC-conductivity model. The reduction in Ohmic losses under the AC-conductivity model is shown to be increasingly significant as the frequency reaches deeper into the THz region. Such effects are of considerable importance to THz gyrotrons for which the minimization of Ohmic losses constitutes a major design consideration.
Network model for thermal conductivities of unidirectional fiber-reinforced composites
Wang, Yang; Peng, Chaoyi; Zhang, Weihua
2014-12-01
An empirical network model has been developed to predict the in-plane thermal conductivities along arbitrary directions for unidirectional fiber-reinforced composites lamina. Measurements of thermal conductivities along different orientations were carried out. Good agreement was observed between values predicted by the network model and the experimental data; compared with the established analytical models, the newly proposed network model could give values with higher precision. Therefore, this network model is helpful to get a wider and more comprehensive understanding of heat transmission characteristics of fiber-reinforced composites and can be utilized as guidance to design and fabricate laminated composites with specific directional or specific locational thermal conductivities for structures that simultaneously perform mechanical and thermal functions, i.e. multifunctional structures (MFS).
RELAP5-3D multidimensional heat conduction enclosure model for RBMK reactor application
Energy Technology Data Exchange (ETDEWEB)
Paik, S.
1999-10-01
A heat conduction enclosure model is conceived and implemented by RELAP5-3D between heat structures. The suggested model uses a lumped parameter model that is generally applicable to multidimensional calculational domain. This new model is applied to calculation of RBMK reactor core graphite blocks and is compared to the commercially available Fluid Dynamics Analysis Package (FIDAP) finite element code. Reasonably good agreement between the results of RELAP5-3D and FIDAP is obtained. The new heat conduction enclosure model gives RELAP5-3D a general multidimensional heat conduction capability. It also provides new routes for temperature cooloff of the RBMK graphite blocks from the ruptured channel to the surrounding ones. This ability to predict graphite temperature cooloff is very important during accidents or for transient simulation, especially concerning long-term coolability of the RBMK reactor core.
Li, Yi-Chuan; Chang, Chung-ke; Chang, Chi-Fon; Cheng, Ya-Hsin; Fang, Pei-Ju; Yu, Tsunai; Chen, Sheng-Chia; Li, Yi-Ching; Hsiao, Chwan-Deng; Huang, Tai-huang
2014-01-01
The RstA/RstB system is a bacterial two-component regulatory system consisting of the membrane sensor, RstB and its cognate response regulator (RR) RstA. The RstA of Klebsiella pneumoniae (kpRstA) consists of an N-terminal receiver domain (RD, residues 1–119) and a C-terminal DNA-binding domain (DBD, residues 130–236). Phosphorylation of kpRstA induces dimerization, which allows two kpRstA DBDs to bind to a tandem repeat, called the RstA box, and regulate the expression of downstream genes. Here we report the solution and crystal structures of the free kpRstA RD, DBD and DBD/RstA box DNA complex. The structure of the kpRstA DBD/RstA box complex suggests that the two protomers interact with the RstA box in an asymmetric fashion. Equilibrium binding studies further reveal that the two protomers within the kpRstA dimer bind to the RstA box in a sequential manner. Taken together, our results suggest a binding model where dimerization of the kpRstA RDs provides the platform to allow the first kpRstA DBD protomer to anchor protein–DNA interaction, whereas the second protomer plays a key role in ensuring correct recognition of the RstA box. PMID:24990372
Energy Technology Data Exchange (ETDEWEB)
Kühn, Michael [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Weigend, Florian, E-mail: florian.weigend@kit.edu [Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131 Karlsruhe (Germany); Institut für Nanotechnologie, Karlsruher Institut für Technologie, Postfach 3640, 76021 Karlsruhe (Germany)
2014-12-14
“Spin-forbidden” transitions are calculated for an eight-membered set of iridium-containing candidate molecules for organic light-emitting diodes (OLEDs) using two-component time-dependent density functional theory. Phosphorescence lifetimes (obtained from averaging over relevant excitations) are compared to experimental data. Assessment of parameters like non-distorted and distorted geometric structures, density functionals, relativistic Hamiltonians, and basis sets was done by a thorough study for Ir(ppy){sub 3} focussing not only on averaged phosphorescence lifetimes, but also on the agreement of the triplet substate structure with experimental data. The most favorable methods were applied to an eight-membered test set of OLED candidate molecules; Boltzmann-averaged phosphorescence lifetimes were investigated concerning the convergence with the number of excited states and the changes when including solvent effects. Finally, a simple model for sorting out molecules with long averaged phosphorescence lifetimes is developed by visual inspection of computationally easily achievable one-component frontier orbitals.
Chatterjee, Arka; Chakrabarti, Sandip K.; Ghosh, Himadri
2017-03-01
Two-component advective flow (TCAF) successfully explains spectral and timing properties of black hole candidates. We study the nature of photon trajectories in the vicinity of a Schwarzschild black hole and incorporate this in predicting images of TCAF with a black hole at the Centre. We also compute the emitted spectra. We employ a Monte Carlo simulation technique to achieve our goal. For accurate prediction of the image and the spectra, null trajectories are generated without constraining the motion to any specific plane. Redshift, bolometric flux and corresponding temperature have been calculated with appropriate relativistic consideration. The CENtrifugal pressure supported BOundary Layer or CENBOL near the inner region of the disc, which acts as the Compton cloud, is appropriately modelled as a thick accretion disc in Schwarzschild geometry for the purpose of imaging and computing spectra. The variations of spectra and image with physical parameters such as the accretion rate (dot{m}_d) and inclination angle are presented. We show that the gravitational bending effects of photons do change the spectral shape to some extent.
Resistors Network Model of Bcc Cell for Investigating Thermal Conductivity of Nanofluids
Masturi, Masturi; Sustini, Euis; Khairurrijal, Khairurrijal; Abdullah, Mikrajuddin
2011-12-01
A model was developed to investigate thermal conductivity of nanofluids. It was based on resistors circuit network in bcc cell as alternative form of simple cubic cell has been successfully developed. The present model has involved the Brownian motion of nanoparticles in the fluid with an assumption that the nanoparticles are in low volume fraction so the diameter size of nanoparticle can be neglected in comparison to particles distance. Generally, this model was very fit to experimental results has been obtained from some authors. As an example, for alumina-water nanofluid, that is alumina (Al2O3) dispersed in water, it was found that the enhancement of its thermal conductivity calculated using this model was in good agreement with experimental results that it tended to increase as nanoparticle fraction increases. As in alumina-water, the agreement was also shown in titania (TiO2)-water and cuprum oxide (CuO)-water. This model also showed the dependence of thermal conductivity enhancement to diameter size of nanoparticle and temperature of the nanofluid. In relation to diameter size, thermal conductivity enhancement decreases as diameter size increases. Otherwise, thermal conductivity enhancement increases as temperature increases. However, even though this model was very close to experimental results, the problem of this model was in dimensionless constant that varied for different nanofluids.
Modeling the evolution of complex conductivity during calcite precipitation on glass beads
Leroy, Philippe; Li, Shuai; Jougnot, Damien; Revil, André; Wu, Yuxin
2017-01-01
SUMMARYWhen pH and alkalinity increase, calcite frequently precipitates and hence modifies the petrophysical properties of porous media. The complex conductivity method can be used to directly monitor calcite precipitation in porous media because it is sensitive to the evolution of the mineralogy, pore structure and its connectivity. We have developed a mechanistic grain polarization model considering the electrochemical polarization of the Stern and diffuse layer surrounding calcite particles. Our complex conductivity model depends on the surface charge density of the Stern layer and on the electrical potential at the onset of the diffuse layer, which are computed using a basic Stern model of the calcite/water interface. The complex conductivity measurements of Wu et al. (2010) on a column packed with glass beads where calcite precipitation occurs are reproduced by our surface complexation and complex conductivity models. The evolution of the size and shape of calcite particles during the calcite precipitation experiment is estimated by our complex conductivity model. At the early stage of the calcite precipitation experiment, modeled particles sizes increase and calcite particles flatten with time because calcite crystals nucleate at the surface of glass beads and grow into larger calcite grains around glass beads. At the later stage of the calcite precipitation experiment, modeled sizes and cementation exponents of calcite particles decrease with time because large calcite grains aggregate over multiple glass beads, a percolation threshold is achieved, and small and discrete calcite crystals polarize.