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Sample records for tree roystonea regia

  1. Purification, crystallization and preliminary X-ray diffraction analysis of royal palm tree (Roystonea regia) peroxidase

    Energy Technology Data Exchange (ETDEWEB)

    Watanabe, Leandra; Nascimento, Alessandro S. [Instituto de Física de São Carlos, Departamento de Física e Informática, Universidade de São Paulo, Avenida Trabalhador São Carlense 400, CEP 13566-590 São Carlos, SP (Brazil); Zamorano, Laura S. [Departamento de Química Física, Facultad de Química, Universidad de Salamanca, 37008 Salamanca (Spain); Shnyrov, Valery L. [Departamento de Bioquímica y Biología Molecular, Facultad de Biología, Universidad de Salamanca, 37007 Salamanca (Spain); Polikarpov, Igor, E-mail: ipolikarpov@if.sc.usp.br [Instituto de Física de São Carlos, Departamento de Física e Informática, Universidade de São Paulo, Avenida Trabalhador São Carlense 400, CEP 13566-590 São Carlos, SP (Brazil); Laboratório Nacional de Luz Síncrotron, Campinas, SP (Brazil)

    2007-09-01

    The purification, crystallization, X-ray diffraction data acquisition and molecular-replacement results of royal palm tree (R. regia) peroxidase are described. Royal palm tree peroxidase (RPTP), which was isolated from Roystonea regia leaves, has an unusually high stability that makes it a promising candidate for diverse applications in industry and analytical chemistry [Caramyshev et al. (2005 ▶), Biomacromolecules, 6, 1360–1366]. Here, the purification and crystallization of this plant peroxidase and its X-ray diffraction data collection are described. RPTP crystals were obtained by the hanging-drop vapour-diffusion method and diffraction data were collected to a resolution of 2.8 Å. The crystals belong to the trigonal space group P3{sub 1}21, with unit-cell parameters a = b = 116.83, c = 92.24 Å, and contain one protein molecule per asymmetric unit. The V{sub M} value and solvent content are 4.07 Å{sup 3} Da{sup −1} and 69.8%, respectively.

  2. Utilisation of polyurethane composit with 50% composition of roystonea regia fiber as noise reduction panel on car hood

    Science.gov (United States)

    Ikhwansyah; Mulia; Gunawan, S.; Lubis, R. D. W.

    2018-02-01

    The objective is to get the characteristics of noise reduction, noise reduction level, variety of measurement spaces, and knowing the process in making acoustic material of natural fiber becomes noise reduction on a car hood. The process of making noise reduction material used casting method and pressed by using molded press. The composition of noise reduction material consist of 50% roystonea regia by 32 mesh and 50% combined by gypsum and polyurethane. The result shows that the average result of noise reduction at X1- side is 5,7% and X2- side is 3,9%, X1+ side is 0,9% and X2+ side is 6,2%, Z1- side is 8,9% and Z2- side is 10,1%, Z1+ side is 9,7% and Z2+ side is 10,01%. The main conclusion of the study shows that a noise reduction which made of roystonea regia with 32 mesh mixed by matrix of polyurethane and gypsum is appropriate for noise reduction on car hood.

  3. Determinación de esteroles en la fracción insaponificable del aceite de los frutos de la palma real cubana (Roystonea regia Determination of sterols determination in unsaponifiable fraction from Cuban royal palm (Roystonea regia fruit oil

    Directory of Open Access Journals (Sweden)

    David Marrero Delange

    2013-03-01

    Full Text Available Introducción: los esteroles han sido ampliamente estudiados por su importancia nutricional y farmacéutica. Sin embargo, para nuestro conocimiento, la composición de esteroles del aceite de los frutos de la palma real cubana (Roystonea regia no ha sido determinada hasta el momento. Objetivos: determinar la composición de esteroles que pudieran estar presentes en la fracción insaponificable del aceite de R. regia mediante CG-EM. Métodos: muestras de dos lotes de aceite de R. regia fueron sometidas al procedimiento para la determinación de esteroles establecido por el del Instituto de Nutracéuticos de los EE.UU., el cual consiste, fundamentalmente, en una saponificación con disolución de KOH/EtOH y posterior extracción con n-hexano de las fracciones insaponificables. Las fracciones obtenidas fueron analizadas por CG-EM como derivados TMS e identificadas por comparación de sus espectros con los de patrones comerciales y los de la base de espectros Wiley. Para la cuantificación se utilizó el colestano como patrón interno. Resultados: en la fracción insaponificable del aceite de R. regia se encontró un contenido total de esteroles de 66,1%; lo que representa un 0,14 % del aceite. La fracción de esteroles, estuvo compuesta principalmente por â -sitosterol (51,2 %, estigmasterol (9,6 %, campesterol (9,2 %, 24-metilen-cicloartanol (9,2 %, Ä5-avenasterol (8,9 %, cicloartanol (7,5 %; además de otros componentes minoritarios como cicloartenol, ã-sitosterol y colesterol. Conclusiones: se identificaron y se cuantificaron mediante CG-EM los esteroles de la fracción insaponificable del aceite de R. regia, en la cual el â-sitosterol resultó el componente mayoritario. Estos resultados son una contribución al estudio de la composición química de dicho aceite y pudieran avalar su posible utilidad nutricional y seguridad.Introduction: sterols have been widely studied because of their pharmaceutical and nutritional importance. However, to

  4. Determinación de esteroles en la fracción insaponificable del aceite de los frutos de la palma real cubana (Roystonea regia

    Directory of Open Access Journals (Sweden)

    David Marrero Delange

    2013-03-01

    Full Text Available Introducción: los esteroles han sido ampliamente estudiados por su importancia nutricional y farmacéutica. Sin embargo, para nuestro conocimiento, la composición de esteroles del aceite de los frutos de la palma real cubana (Roystonea regia no ha sido determinada hasta el momento. Objetivos: determinar la composición de esteroles que pudieran estar presentes en la fracción insaponificable del aceite de R. regia mediante CG-EM. Métodos: muestras de dos lotes de aceite de R. regia fueron sometidas al procedimiento para la determinación de esteroles establecido por el del Instituto de Nutracéuticos de los EE.UU., el cual consiste, fundamentalmente, en una saponificación con disolución de KOH/EtOH y posterior extracción con n-hexano de las fracciones insaponificables. Las fracciones obtenidas fueron analizadas por CG-EM como derivados TMS e identificadas por comparación de sus espectros con los de patrones comerciales y los de la base de espectros Wiley. Para la cuantificación se utilizó el colestano como patrón interno. Resultados: en la fracción insaponificable del aceite de R. regia se encontró un contenido total de esteroles de 66,1%; lo que representa un 0,14 % del aceite. La fracción de esteroles, estuvo compuesta principalmente por â -sitosterol (51,2 %, estigmasterol (9,6 %, campesterol (9,2 %, 24-metilen-cicloartanol (9,2 %, Ä5-avenasterol (8,9 %, cicloartanol (7,5 %; además de otros componentes minoritarios como cicloartenol, ã-sitosterol y colesterol. Conclusiones: se identificaron y se cuantificaron mediante CG-EM los esteroles de la fracción insaponificable del aceite de R. regia, en la cual el â-sitosterol resultó el componente mayoritario. Estos resultados son una contribución al estudio de la composición química de dicho aceite y pudieran avalar su posible utilidad nutricional y seguridad.

  5. Estudios preliminares de estabilidad de un extracto lipídico de los frutos de Roystonea regia en frascos de vidrio ámbar Preliminary studies of a lipid extract stability from the fruits of Roystonea regia in amber glass flasks

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    Roxana de la Caridad Sierra Pérez

    2010-09-01

    Full Text Available El D004 es un nuevo ingrediente activo extraído de los frutos de la palma real cubana (Roystonea regia, promisorio en el tratamiento de la hiperplasia prostática benigna. Para determinar su estabilidad en frascos de vidrio ámbar, se realizaron estudios donde las muestras se sometieron a diferentes condiciones. En condiciones de estrés se observó que el D004 es susceptible a la degradación térmica y oxidativa. En condiciones aceleradas (40 ± 2 ºC y 75 ± 5 % humedad relativa no se observaron cambios significativos en ninguno de los parámetros evaluados durante 12 meses, lo que permitió predecir un tiempo de vida útil de al menos 2 años en condiciones menos drásticas. Esto fue corroborado en las condiciones de las zonas climáticas II (25 ± 2 ºC y 60 ± 5 % humedad relativa y IV (30 ± 2 ºC y 70 ± 5 % humedad relativa.The D004 is a new active ingredient extracted from the Cuban real palm (Roystonea regia, promising in the treatment of the benign prostatic hyperplasia. To determine its stability in amber glass flasks studies were conducted where samples underwent different conditions. In stress situations D004 is sensitive to the thermal and oxidative degradation. Under accelerated conditions (40 ± 2 ºC ad 75 ± 5 % of relative humidity there weren't significant changes in any assessed parameters during 12 months allowing predicting a useful life time of at least 2 years under less drastic conditions. It was corroborated under climatic conditions II (25 ± 2ºC and 60± 5% of relative humidity and IV (30 ± 2 ºC and 70 ± 5 % of relative humidity.

  6. Effect of D-004, a lipid extract from royal palm (Roystonea regia fruits, on phenylephrine-induced contractions of isolated rat prostate Efecto de D-004, un extracto lipídico extraído de las frutas de la palma real (Roystonea regia sobre las contracciones provocadas por la Fenilefrina sobre la próstata aislada de rata

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    Lourdes Arruzazabala Valmaña

    2009-12-01

    Full Text Available D-004, un extracto lipídico de las frutas de Roystonea regia, inhibe la contracción provocada por la norepinefrina en el vas deferens de las ratas. No obstante, el efecto de D-004 sobre las respuestas contráctiles adrenérgicas a1 en las preparaciones aisladas de la próstata no ha sido estudiado. Por lo tanto, este estudio investigó los efectos de D-004 sobre las contracciones provocadas por la fenilefrina en las extracciones aisladas de la próstata de la rata. D-004 (125-500 mg/mL fue adicionado a las preparaciones a partir de la próstata en la que las contracciones fueron provocadas por la fenilefrina (10-6-10-4 M o por CIK (50 mM. D-004 (250-500 mg/mL en forma significativa y la dosis en forma dependiente inhibieron las contracciones provocadas por la fenilefrina mediante un mecanismo no competetitivo, reduciendo así (12-60 % la contracción máxima por la fenilefrina con respecto a las preparaciones controles. D-004 a 500 µg/mL inhibieron de la misma forma tanto CIK como las respuestas contráctiles-fenilefrina. Tamsulosin (0,01 mg/mL eliminó la acción de la fenilefrina (100 % de inhibición, pero no afectó las contracciones provocadas por CIK.D-004, a lipid extract of Roystonea regia fruits, inhibits norepinephrine-elicited contraction in rat vas deferens. Nevertheless, the effect of D-004 on a1-adrenergic contractile responses in isolated prostate preparations had not been studied. Therefore, this study investigated the effects of D-004 on phenylephrine-induced contractions in isolated rat prostate strips. D-004 (125-500 mg/mL was added to prostate preparations in which contractions were induced with phenylephrine (10-6-10-4 M or with ClK (50 mM. D-004 (250-500 mg/mL significantly (p < 0,01.and dose-dependently inhibited the phenylephrine-induced contractions through a non-competitive mechanism, since it reduced (12-60 % the maximal contraction to phenyle phrine with respect to control preparations. D-004 at 500 mg/mL inhibited

  7. Efecto del D-004, un extracto del fruto de Roystonea regia y omega-3 en el modelo de nado forzado en ratones Effect of D-004, a fruit extact from Roystonea regia and Omega-3 in a model of forced swimming in mice

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    Daisy Carbajal Quintana

    2010-03-01

    Full Text Available La depresión se encuentra entre las principales causas de morbilidad y mortalidad de la población adulta y su manejo farmacológico incluye, entre otras opciones alternativas, el uso de la medicina complementaria, como es el caso del aceite de pescado rico en ácidos grasos omega-3 (AGw3. El D-004, extracto lipídico de los frutos de la palma real (Roystonea regia que consiste en una mezcla de ácidos grasos, ha mostrado poseer una moderada acción antidepresiva. El objetivo de este trabajo consistió en comparar los efectos del tratamiento oral con D-004, con los AGw3 y con su terapia combinada en el modelo del nado forzado en ratones. Para ello, ratones machos se distribuyeron en 8 grupos: uno control tratado con el vehículo, dos con D-004 (250 y 500 mg/kg , dos con AGw3 (250 y 500 mg/kg, dos con la combinación y uno con imipramina (10 mg/kg i.p.. Todos los tratamientos disminuyeron significativamente el tiempo de inmovilidad con respecto al control, sin diferencias entre dosis similares de los respectivos tratamientos. En conclusión, el D-004, los AGw3 y su terapia combinada resultaron igualmente efectivos en reducir el tiempo de inmovilidad de los ratones, sin manifestarse efectos aditivos o sinérgicos con la administración conjunta de ambas sustancias.Depression is among the major causes of morbidity and mortality of adult population and its pharmacologic management includes among other alternative options, the use of the complementary medicine, e.g. the fish oil rich in Omega-3 fatty acids (AGw3. The D-004, a lipid extract of Real Palm fruits (Roystonea regia consisting of a fatty acid mixture, has a moderate antidepressant action. The aim of present paper was to compare the effects of oral treatment using D-004 with the AGw3 and with its combined therapy in forces swimming in mice. Thus, the male mice were distributed into 8 groups: one as control treated with vehicle, two with D-004 (250 and 500 mg.kg, two with AGw3 (250 and 500

  8. Delonix regia Rat. (Gulmohar) is a highly ornamental tree largely ...

    Indian Academy of Sciences (India)

    Delonix regia Rat. (Gulmohar) is a highly ornamental tree largely cultivated on roadsides and in gardens for its beautiful foliage and scarlet red (lowers. Gulmohar trees in full bloom and new leaves dominate other flora in summer months. The infusion of flowers is used in bronchitis, asthma and malaria.

  9. Juglans regia L. tree plantations for wood production in mining area of S. Barbara (AR. Evaluation of N-fixing accessory trees effect

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    Tani A

    2006-01-01

    Full Text Available The study was carried out in experimental plots located in the Arno valley (Cavriglia, province of Arezzo - Italy. The experimental plots, walnut (Juglans regia L. plantations both pure and mixed to accessory trees (Alnus cordata Loisel., Corylus avellana L., Eleagnus angustifolia L. and Robinia pseudoacacia L., were established in 1986 and 1989. Data on grown and architectural characteristics were collected in different periods on trees aged 9, 13 and 16. Walnut trees grown with accessory trees showed the best performances, especially if associated with N-fixing species. These positive effects are probably due to many co-occuring favourable causes, a remarkable aspect of which is the higher availability of N. To better investigate the above effect, N concentration in the soil and in walnut leaves was measured in plantations both pure and mixed with Italian alder (Alnus cordata or black locust (Robinia pseudoacacia, and N concentration values were compared with growth characteristics. The results showed that Juglans regia trees associated with Italian alder grow faster, with straighter stems and better stem shapes for qualified wood production. Even if walnut trees growing in plantations with black locust show similar N concentration values, growth performances are worse.

  10. Mechanical and electrical performance of Roystonea regia/glass ...

    Indian Academy of Sciences (India)

    used in automotive, furniture, construction fields. Natu- ral fibre reinforced polyester composites are being ..... Dickert M 2009 Mater. Design 30 2538. Joseph Seena and Thomas Sabu 2008 J. Appl. Polym. Sci. 109 256. Li Y, Mai Y and Ye L 2000 Compos. Sci. Technol. 60 2037. Mishra S, Mohanty A K, Drzal L T, Misra M, ...

  11. Mechanical and electrical performance of Roystonea regia/glass ...

    Indian Academy of Sciences (India)

    Jute, kenaf, flax, ramie and hemp are widely accepted for their good mechanical properties (Cicala et al 2009). Despite having several merits, natural fibre composites show lower modulus, lower strength and poor moisture resistance when compared with the composites reinforced with synthetic fibres such as glass and ...

  12. Delonix regia

    African Journals Online (AJOL)

    NICOLAAS

    The seeds of Delonix regia were investigated for proximate, antinutrient, mineral, amino acid and vitamins compositions while the physicochemical properties, fatty acids and acylglycerols of its oil were also determined. Moisture, crude fibre, ash, crude fat, crude protein, carbohydrate, tannin, oxalate and saponin were 10.12 ...

  13. Drosera regia

    Science.gov (United States)

    Robert R. Ziemer

    1980-01-01

    When I first received my plant of Drosera regia from a friend, it was a small specimen and I grew the plant in a 4-inch pot under grow-lux bulbs in my house. During the first summer, it grew reasonably well but put out only a maximum of 3-inch leaves

  14. Survey of diseases caused by Fusarium spp. on palm trees in the Canary Islands

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    Julio Hernández-Hernández

    2010-05-01

    Full Text Available Between 2006 and 2007, palm trees growing in both gardens and public parks and natural palm groves in the Canary Islands (Spain, and showing symptoms of wilt and dieback, were surveyed. Isolates were recovered from affected tissues of the crowns, leaves and vascular fragments on potato dextrose agar (PDA. After incubation, the Fusarium spp. colonies recovered were single-spored. They were transferred to PDA and Spezieller Nahrstoffarmer Agar (SNA for morphological identification. Identification of Fusarium oxysporum f. sp. Canariensis was confirmed by PCR with the specific primers HK66 and HK67, which amplified a fragment of 567 bp. Fusarium wilt caused by F. oxysporum f. sp. canariensis was found on 54 Phoenix canariensis trees growing on four islands: Gran Canaria, Fuerteventura, La Palma and Tenerife. F. proliferatum occurred on fifteen palms (10 P. canariensis, 1 P. dactylifera, 3 Roystonea regia and 1 Veitchia joannis located in Gran Canaria, Fuerteventura and Tenerife. Both these Fusarium species were found only in diseased palms from gardens and public parks, but not in natural palm groves. The results show that Fusarium wilt of P. canariensis is common in the Canary Islands and for the first time report F. proliferatum affecting different palm species in those islands.

  15. The exotic palm Roystonea oleracea (Jacq. O.F. Cook as a rural biotype for Rhodnius neglectus Lent, 1954, in Caçu, State of Goiás

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    Elisa Neves Vianna

    2014-10-01

    Full Text Available Introduction Rhodnius neglectus is a triatomine that colonizes different palm species. In this study, we aimed to describe the presence of this triatomine bug in the royal palms (Roystonea oleracea in a rural region of the State of Goiás. Methods Palm infestation was investigated by dissecting the palms or by using live-bait traps. Results Two palm trees were infested by R. neglectus negative for Trypanosoma cruzi, the etiological agent for Chagas disease. In the study area, R. neglectus is frequently found in households. Conclusions The adaptation of this species to palm trees introduced in Brazil for landscaping purposes poses another challenge for controlling the vectors of Chagas disease.

  16. Caracterización químico-física de la peroxidasa de Palma Real (Roystonea regia), una enzima con elevada estabilidad

    OpenAIRE

    Sánchez Zamorano, Laura

    2010-01-01

    [ES] Esta tesis se plantea definir una enzima con unas características mucho mejores que las de la peroxidasa de rábano picante, capaz de sustituirla en la mayor parte de sus aplicaciones biotecnológicas. Una enzima más estable permitiría realizar los procesos más eficazmente y en mejores condiciones de pH y temperatura, lo que sería rentable y, además, beneficioso para el Medio Ambiente. [EN] This thesis to define an enzyme with characteristics far superior to those of horseradish peroxid...

  17. Bark is the Hallmark

    Indian Academy of Sciences (India)

    The bark of a tree is essential for its survival on this planet. Trees show great diversity in their bark morphology .... (Roystonea regia), a white and smooth hard periderm is devel- oped on the trunk, which remains on the stem .... Bark from the common oak (Quercus suber) and from several other genera particularly in the ...

  18. Effect Of Delonix Regia Leaf Extract On Glucose Tolerance In ...

    African Journals Online (AJOL)

    Delonix regia (Fabaceae) leaf is used in folk medicine of Bangladesh for the treatment of diabetes, but so far no scientific study has been done which may support its use in traditional medicine. The present study was carried out to evaluate the possible glucose tolerance efficacy of methanolic extract of Delonix regia leaf ...

  19. Ecotoxicological tests with cadmium and chromium using postlarvae of silverside Odontesthes (Austromenidia regia regia Hildebrand

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    Giovana Vera

    2014-06-01

    Full Text Available In the present paper, the mean effective concentrations (EC50% of cadmium (Cd+2 and chromium (Cr+6 using postlarvae of the silverside fish Odontesthes (Austromenidia regia regia were determined. The postlarvae were exposed to different concentrations of the metals, between 0,142 and 1,208 mg.L–1 of cadmium and between 0,53 and 33,74 mg.L–1 of chromium. The mean effective concentrations (EC50% obtained were 0,648 mg.L–1 of cadmium (at 96 h and 2,68 mg.L–1 of chromium (at 96 h. Comparatively, cadmium is more toxic than chromium, and silverside is more tolerant than other organisms.

  20. Walnut (Juglans regia L.): genetic resources, chemistry, by-products.

    Science.gov (United States)

    Martínez, Marcela L; Labuckas, Diana O; Lamarque, Alicia L; Maestri, Damián M

    2010-09-01

    Walnut (Juglans regia L.) is the most widespread tree nut in the world. There is a great diversity of genotypes differing in forestry, productivity, physical and chemical nut traits. Some of them have been evaluated as promising and may serve as germplasm sources for breeding. The nutritional importance of the nut is related to the seed (kernel). It is a nutrient-dense food mainly owing to its oil content (up to 740 g kg(-1) in some commercial varieties), which can be extracted easily by screw pressing and consumed without refining. Walnut oil composition is dominated largely by unsaturated fatty acids (mainly linoleic together with lesser amounts of oleic and linolenic acids). Minor components of walnut oil include tocopherols, phospholipids, sphingolipids, sterols, hydrocarbons and volatile compounds. Phenolic compounds, present at high levels in the seed coat but poorly extracted with the oil, have been extensively characterised and found to possess strong antioxidant properties. The oil extraction residue is rich in proteins (unusually high in arginine, glutamic and aspartic acids) and has been employed in the formulation of various functional food products. This review describes current scientific knowledge concerning walnut genetic resources and composition as well as by-product obtainment and characteristics. Copyright 2010 Society of Chemical Industry.

  1. Phytochemical study of Juglans regia L. leaves.

    Science.gov (United States)

    Schwindl, Sebastian; Kraus, Birgit; Heilmann, Jörg

    2017-12-01

    A methanolic extract of Juglans regia L. leaves was fractioned by various chromatographic techniques yielding a total of 40 metabolites belonging to megastigmane, tetralone, phenylpropanoid, neolignane and juglone glycosides. Ten unknown megastigmane glucoside derivatives (juglanionosides A-K, 1-10) and six unknown tetralone glucoside derivatives (juglanosides J-O, 11-16) together with 24 known compounds - among them 16 described for the first time in Juglans - were isolated. As characteristic structural feature, the previously undescribed compounds showed acylation of the sugar units with sinapic, ferulic, coumaric, benzoic or salicylic acid. Their chemical structures were elucidated on the basis of 1D and 2D NMR techniques, HRESIMS as well as CD spectroscopy. Absolute stereochemistry was revealed by mild alkaline hydrolysis and comparison of CD and polarimetric data to literature values. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Antihemolytic activity and mineral contents of Juglans regia L. flowers.

    Science.gov (United States)

    Ebrahimzadeh, M A; Nabavi, S F; Nabavi, S M

    2013-07-01

    Juglans (J.) regia L. is known to possess many biological properties. In this study, antihemolytic activity of methanol extract of Juglans regia L. flower were investigated. Antihemolytic activities of Juglans regia L. flowers were evaluated by various in vitro assays. In addition, scavenging of hydrogen peroxide and mineral contents of flowers were determined using atomic absorption spectroscopy. Extract showed good antihemolytic activity against H2O2 and CuOOH induced hemolysis in comparison with control. Extract was capable of scavenging H2O2 in a concentration dependent manner. IC50 for H2O2 scavenging activity was 311±12.8 µg ml-1. The amount of eight elements was determined and was in the order: Mn > Cu > Fe > Zn. Our study indicate that J. regia flower has remarkable antihemolytic activity, which maybe result of its high phenol and flavonoid contents, especially quercetin.

  3. Implication des aquaporines et de la nervation des feuilles dans la variabilité de la conductance hydraulique foliaire ombre/lumière chez P. nigra, J. regia et F. sylvatica

    OpenAIRE

    Garavillon, Marie

    2012-01-01

    Trees autoecology seems to be partially controlled by leaf architecture which affects water flux through the leaves and probably the tree's drought resistance. The aim of this work is to show, under natural conditions within the tree crown, the influence of light in leaf hydraulic conductance (Kleaf) regulation, the variation of this conductance by PIP aquaporins links with leaf architecture in different tree species. Shade and light leaves of P.nigra, J.regia and F.sylvatica grown in outside...

  4. The effect of hydroalcoholic extract of Juglans regia L. leaf on blood pressure and its interaction with adrenergic system of male rats

    Directory of Open Access Journals (Sweden)

    Hajar Ebrahimiyan

    2016-03-01

    Full Text Available Background: Hypertension is one of the most common diseases in recent century with several complications. The purpose of this study was to evaluate the effect of hydroalcoholic extract of Juglans regia L. leaves (Walnut tree on blood pressure and its interaction with the adrenergic system in male rats. Methods: In this experimental study that established in the physiology lab, School of scinse in Shiraz University from September to October 2013, in order to determine some of hydroalcoholic extract of Juglans regia L. leaves effect on blood pressure, the present study was performed by following procedure: 10 adult male wistar rats weighing between 180-250g were used. They were divided into two groups (Each group contained 5 rats randomly: Juglans regia L. leaf extract group and Juglans regia L. leaf extract and adrenaline group. Then each rat was anesthetized by IP injection of 1.2 g/kg urethane. After tracheostomy the femoral vine and artery were cannulated for drug injection and blood pressure recording respectively. Arterial cannula for recording arterial blood pressure connected to a pressure transducer (PowerLab, ADInstruments, Sydney, Australia. Blood pressure parameters were recorded before and after IV administration of hydroalcoholic extract of Juglans regia L. leaf, solvent, adrenalin and extract with adrenaline. Results: The result showed a significant decrease of mean arterial pressure, systolic and diastolic pressure in response to extract with compare to control and sham group (P<0.05. Also a significant decrease of blood pressure showed in presence of walnut leaf extract and adrenaline with compare to sham group (P<0.05. Conclusion: It can be concluded that hydroalcoholic extract of Juglans regia L. leaf suggested as a hypotensive agent. It seems that this effect is probably due to inhibitory effect on adrenergic system.

  5. Effects of dietary levels of roasted flamboyant ( Delonix regia ) seed ...

    African Journals Online (AJOL)

    A study was conducted to observe the effects of diets containing varying levels of roasted Delonix regia seed meal on the milk quality and milk yield from Savanna brown does using fifteen nulliparous does. The animals were allotted to five treatment groups of three replicates each in a completely randomized design and fed ...

  6. Effect of replacing maize with pride of barbados ( Delonix regia ...

    African Journals Online (AJOL)

    The five dietary treatments contained 0, 25, 50, 75 and 100% replacement levels of Delonix regia seed meal (DRSM) for maize in a completely randomized design experiment. The parameters investigated during the study were: feed intake, weight gain, feed conversion ratio and feed cost. At the end of the feeding trial, ...

  7. Juglans regia Hexane Extract Exerts Antitumor Effect, Apoptosis ...

    African Journals Online (AJOL)

    cell cycle phase distribution as well as on the apoptosis induction using flow cytometry and inverted phase contrast microscopy. EXPERIMENTAL. Plant material and extraction procedure. Juglans regia leaves were collected during July -. August 2013 from a local site in Jianguo District,. China. The plant material was ...

  8. Assessment of Gastroprotective Potential of Delonix regia (Boj Ex ...

    African Journals Online (AJOL)

    HP

    Purpose: To assess the gastroprotective potential of the stem bark ethanol extract of Delonix regia. (EDR) on ethanol and cold restrain stress-induced ... cell death because of their extreme reactivity. They attack essential cell constituents, ... Wistar albino rats of either sex weighing 180 -. 220 g were used for all experiments.

  9. Analgesic Activity of the Methanol Leaf Extract of Delonix Regia ...

    African Journals Online (AJOL)

    The analgesic activity of the methanolic leaf extract of Delonix regia in albino Wistar mice using acetic acid –induced writhing reflex, tail immersion and hot plate experimental models was evaluated. Three test doses (200, 400 and 800 mg/kg body weight) of the extract were used while 400 mg/kg of acetylsalicyclic acid ...

  10. PENGARUH EKSTRAK BUNGA FLAMBOYAN (Delonix regia Hook Raf TERHADAP PERKECAMBAHAN DAN PERTUMBUHAN CABAI MERAH BESAR (Capsicum annuum L.

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    Royana Pakpahan

    2017-03-01

    Full Text Available The reach aim to the effect of flamboyant (Delonix regia Hook Raf. flower extract on the growth of large red pepper plant (Capsicum annuum L., for use a land under of flamboyant trees. The research design used was Random Block Design, with five treatments extract concentration, control, 5%, 10%, 15%, and 20%, each treatment was repeated five time. Observations were made during the 15 weeks. The results showed the percentage of germination and plant height are effect significant, while the number of leaves, root length and dry weight of the plant does not provide effect for the growth of large red pepper plant. Keywords : flamboyant, allelopathy, large red pepper

  11. Batrachedra nuciferae, an inflorescence-feeding moth associated with coconut, Cocos nucifera, and palmiste, Roystonea oleracea, in Trinidad, West Indies.

    Science.gov (United States)

    Cock, Matthew J W

    2013-01-01

    In 2006, Batrachedra nuciferae Hodges (Lepidoptera: Batrachedridae) was the first phytophagous insect to be reported from inflorescences of coconut, Cocos nucifera L. (Arecales: Arecaceae), in Trinidad, West Indies. At that time, it was suggested to be an introduced species contributing to decreasing coconut yields on the island and potentially a threat to other palms. In this preliminary study, inflorescences of coconut, seven indigenous palms, and six exotic ornamental palms were surveyed in several areas of Trinidad. Caterpillars of more than 10 species of Lepidoptera were found and reared through to the adult stage. Batrachedra nuciferae was positively identified. It was concluded that the caterpillars of B. nuciferae feed on pollen in the male flowers of coconut and palmiste or royal palm, Roystonea oleracea (Jacquin) O.F. Cook. There was no evidence that B. nuciferae bred on any of the other palms surveyed, but it is not conclusive that they do not do so. A parasitoid, Apanteles (sensu lato) sp. (Hymenoptera: Braconidae), of B. nuciferae was reared. On available information, B. nuciferae is more likely to be an indigenous species that has hitherto been overlooked than an introduced species. In view of what is known about damage-yield relationships and biological control agents, B. nuciferae is unlikely to cause yield losses to coconut, so control measures are not justified.

  12. Juglans regia L. (Juglandaceae at Peter the Great Botanical Garden in Saint Petersburg

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    Firsov Gennadiy Afanasyevich

    2015-10-01

    Full Text Available Juglans regia L. was the first exotic species of this genus to be cultivated at Peter the Great Botanical Garden of the V.L. Komarov Botanical Institute of RAS in Saint Petersburg – it was mentioned at M.M. Terekhovsky’s Catalogue in 1796. Firstly it was cultivated indoors. It was tested by E.L. Regel as early as in 1871 but unsuccessfully. It has been cultivated trustworthy outdoors since 1914. It was seriously frost damaging during the 20th century in cold winters with temperature below -25 oC, such as in 1955/56, 1968/69, 1978/79, аnd 1984/85. The winter of 1986/87 with absolute minimum temperature -34,7oC was very unfavourable, and many trees died after it. At present, the winter hardiness has increased with the warming of the climate. There are no frost damages at all or they are small and insignificant. The largest trees now reach 19 m high and 31 cm of trunk diameter in the age of 67 years old. The majority of trees produce fruits. Twenty trees of modern collection represent the five generations. The visible increasing of adaptation abilities is observed starting with the fifth generation. The trees of the fifth generation are good looking single-trunked trees without frost damages. Since 2014 they have been producing fruits, and subsequently this is possible to obtain plants of the sixth generation. Apparently the specimens of the fifth and the next generations are of special value to test at areas outside of the city to promote the distribution of the walnut in cultivation.

  13. Antibacterial Effect of Juglans Regia Bark against Oral Pathologic Bacteria

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    Faramarz Zakavi

    2013-01-01

    Full Text Available Background. In this study antimicrobial effect of ethanolic and aqueous extracts of Juglans regia bark in Iran was evaluated on four different oral bacteria, Streptococcus mutans, Streptococcus salivarius, Streptococcus sanguis, and Staphylococcus aureus. Methods. Aqueous and ethanol extracts of Juglans regia bark were prepared by using disk diffusion technique and Minimal Inhibitory Concentration (MIC methods. Tetracycline 30 μg and Erythromycin 15 μg were used as positive control and water as negative control in disk diffusion and MIC methods. Data were analyzed by ANOVA test. Results. The results showed that S. sanguis and S. mutans were the most sensitive and the most resistant bacteria against ethanolic and aqueous extracts, respectively. Ethanolic extract had significant antibacterial effect against all tested bacteria. Aqueous extract did not show antibacterial effect on S. mutans, in contrast to ethanolic extract. Aqueous extract had significantly antibacterial effect against Staphylococcus aureus, S. salivarius, and S. sanguis compared to control (P<0.0001, but it did not show effect on S. mutans when compared with Erythromycin. According to the obtained MIC values, ethanol extract of Juglans regia bark had the lowest rate. Conclusion. The results may provide the basis for using natural antimicrobial substance for oral hygiene prophylaxis purposes.

  14. Aspectos biológico-pesqueros del pejerrey (Odontesthes regia regia en el puerto de Ilo durante 1996-1998

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    Hugo Treviño

    2014-06-01

    Full Text Available Se analizaron los aspectos biológicos y pesqueros del pejerrey peruano (Odontesthes regia regia población en Ilo, desde enero de 1996 a septiembre de 1998. Las capturas fueron tres veces más alta (72,76 t que las de 1996 hasta 1997, mientras que con el calentamiento de "El Niño" en 1998 éstas se redujeron a 0,62 t. Durante el evento "El Niño 1997-1998" la población mostró también una serie de cambios en la distribución, la reproducción y la composición de la dieta. Estos cambios se asociaron a la incursión de agua subtropical superficial.

  15. Landscape genetics of Persian walnut (Juglans regia L.) across its Asian range

    Science.gov (United States)

    Paola Pollegioni; Keith E. Woeste; Francesca Chiocchini; Irene Olimpieri; Virginia Tortolano; Jo Clark; Gabriel E. Hemery; Sergio Mapelli; Maria Emilla. Malvolti

    2014-01-01

    Persian walnut (Juglans regia L) is an economically important species cultivated worldwide for its wood and nuts. Despite the increasing interest in the development of conservation strategies for walnut germplasm, an accurate and full-scale overview of wild genetic resources of J. regia has not been conducted because natural...

  16. In vitro antibacterial and free radical scavenging activity of green hull of Juglans regia

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    Pardeep Sharma

    2013-08-01

    Full Text Available Antioxidant supplements from plants are vital to count the oxidative damage in cells. We assessed the antioxidants and antibacterial activity of green hull of Juglans regia in this study. According to our results the maximum antibacterial activity was observed in ethanolic extract when compared to other extract. So, the ethanolic extract was studied for antioxidant activity which exhibited high antiradical activity against DPPH, hydroxyl, and nitric oxide radicals. In conclusion, green hull of J. regia showed strong reducing power activity and total antioxidant capacity. The results justify the therapeutic application of plant in the indigenous system of medicine. Keywords: Juglans regia, Ethanolic extract, Antioxidants, DPPH, Antibacterial activity

  17. A simple digestion method with a Lefort aqua regia solution for diatom extraction.

    Science.gov (United States)

    Wang, Huipin; Liu, Yan; Zhao, Jian; Hu, Sunlin; Wang, Yuzhong; Liu, Chao; Zhang, Yanji

    2015-01-01

    Presence of diatoms in tissues has been considered as a significant sign of drowning. However, there are limitations in the present extraction methods. We developed a new digestion method using the Lefort aqua regia solution (3:1 nitric acid to hydrochloric acid) for diatom extraction and evaluated the digestive capability, diatom destruction, and diatoms' recovery of this new method. The kidney tissues from rabbit mixed with water rich in diatoms were treated by the Lefort aqua regia digestion method (n = 10) and the conventional acid digestion method (n = 10). The results showed that the digestive capability of Lefort aqua regia digestion method was superior to conventional acid digestion method (p 0.05). The Lefort aqua regia reagent is an improvement over the conventional acid digestion for recovery of diatoms from tissue samples. © 2014 American Academy of Forensic Sciences.

  18. Effect of fibre content and alkali treatment on mechanical properties ...

    Indian Academy of Sciences (India)

    Roystonea regia fibre; epoxy resin; alkali treatment; mechanical properties. Abstract. The present paper investigates the effect of fibre content and alkali treatment on tensile, flexural and impact properties of unidirectional Roystonea regia natural-fibre-reinforced epoxy composites which are partially biodegradable.

  19. Purification and characterization of tyrosinase from walnut leaves (Juglans regia).

    Science.gov (United States)

    Zekiri, Florime; Molitor, Christian; Mauracher, Stephan G; Michael, Claudia; Mayer, Rupert L; Gerner, Christopher; Rompel, Annette

    2014-05-01

    Polyphenol oxidase (PPO) is a type-3 copper enzyme catalyzing the oxidation of phenolic compounds to their quinone derivates, which are further converted to melanin, a ubiquitous pigment in living organisms. In this study a plant originated tyrosinase was isolated from walnut leaves (Juglans regia) and biochemically characterized. It was possible to isolate and purify the enzyme by means of an aqueous two-phase extraction method followed by chromatographic purification and identification. Interestingly, the enzyme showed a rather high monophenolase activity considering that the main part of plant PPOs with some exceptions solely possess diphenolase activity. The average molecular mass of 39,047 Da (Asp(101)→Arg(445)) was determined very accurately by high resolution mass spectrometry. This proteolytically activated tyrosinase species was identified as a polyphenol oxidase corresponding to the known jrPPO1 sequence by peptide sequencing applying nanoUHPLC-ESI-MS/MS. The polypeptide backbone with sequence coverage of 96% was determined to start from Asp(101) and not to exceed Arg(445). Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

  20. Synergistic antimicrobial activity of Camellia sinensis and Juglans regia against multidrug-resistant bacteria.

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    Amber Farooqui

    Full Text Available Synergistic combinations of antimicrobial agents with different mechanisms of action have been introduced as more successful strategies to combat infections involving multidrug resistant (MDR bacteria. In this study, we investigated synergistic antimicrobial activity of Camellia sinensis and Juglans regia which are commonly used plants with different antimicrobial agents. Antimicrobial susceptibility of 350 Gram-positive and Gram-negative strains belonging to 10 different bacterial species, was tested against Camellia sinensis and Juglans regia extracts. Minimum inhibitory concentrations (MICs were determined by agar dilution and microbroth dilution assays. Plant extracts were tested for synergistic antimicrobial activity with different antimicrobial agents by checkerboard titration, Etest/agar incorporation assays, and time kill kinetics. Extract treated and untreated bacteria were subjected to transmission electron microscopy to see the effect on bacterial cell morphology. Camellia sinensis extract showed higher antibacterial activity against MDR S. Typhi, alone and in combination with nalidixic acid, than to susceptible isolates." We further explore anti-staphylococcal activity of Juglans regia that lead to the changes in bacterial cell morphology indicating the cell wall of Gram-positive bacteria as possible target of action. The synergistic combination of Juglans regia and oxacillin reverted oxacillin resistance of methicillin resistant Staphylococcus aureus (MRSA strains in vitro. This study provides novel information about antimicrobial and synergistic activity of Camellia sinensis and Juglans regia against MDR pathogens.

  1. Water Extract of Juglans Regia L. And Diabetes Mellitus in Iranian Traditional Medicine

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    Sarahroodi S.

    2009-11-01

    Full Text Available AbstractBackground and Objectives: There are many reports about the glucose lowering effects of medicinal plants in animal models. There are a some reports in Iranian traditional medicine about glucose lowering effect of septum water extract of Juglans Regia L. In the present study, effect of aqueous extract of the septum of Juglans Regia L. on plasma glucose is assessed. Methods: After preparing the water extract of Juglans Regia L. and concentrating of it the lyophilized extract, was tested in diabetic (ip injection of streptozocin and normal rats. Comparison between groups was made by analysis of variance (ANOVA and the differences between the means assessed using student’s t test. Results: In an oral glucose tolerance test (OGGT, a single oral administration of the water extract at doses of 50, 250 and 750 mg/kg body weight didn’t lowered the plasma glucose level in the normal rats. Although that insulin administration (5IU/kg caused a reduction of serum glucose(P0.005. Conclusion: These results demonstrated that the water extract of the septum of Juglans regia's fruit didn’t have a significant hypoglycemic effect in rats.Keywords: Diabetes Mellitus; Juglans Regia L.; Rat.

  2. The exotic palm Roystonea oleracea (Jacq. O. F. Cook (Arecaceae on an island within the Atlantic Forest Biome: naturalization and influence on seedling recruitment

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    Rodrigo Zucaratto

    2014-09-01

    Full Text Available Here, we investigated the population structure of the exotic palm Roystonea oleracea in a swamp on an island within the Atlantic Forest Biome, evaluating its influence on the seedling recruitment of other plant species. The population structure was analyzed in six 4 × 30 m plots, within which we categorized all individuals by ontogenetic stage. The influence of R. oleracea on the seedling recruitment of other plant species was evaluated in 2 × 2 m plots established beneath palm crowns and in adjacent areas without palms. We recorded 53 R. oleracea individuals. The majority (56.6% of the R. oleracea population was composed of immature adults, followed by mature adults. The density, richness and diversity of seedling species differed significantly between areas beneath and away from palms, the values being lower beneath R. oleracea crowns. Our results indicate that R. oleracea recruitment does not require human intervention, the number of reproductive individuals characterizing successful naturalization. This underscores the need for management policies aimed at palm eradication in order to avoid reductions in biodiversity.

  3. Seasonal changes in english walnut (Juglans regia L.) (Juglandaceae), fruit properties and host use patterns by Rhagoletis zoqui (Diptera: Tephritidae)

    Science.gov (United States)

    Rhagoletis zoqui Bush is a Neosubtropical, univoltine, frugivorous tephritid fly that exploits both native Juglans spp. and the introduced, Palearctic English walnut, Juglans regia. The seasonal development of commercial J. regia fruit and the pattern of host exploitation by R. zoqui were tracked ov...

  4. Anthocyanin Characterization of Pilot Plant Water Extracts of Delonix regia Flowers

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    Emile M. Gaydou

    2008-06-01

    Full Text Available Following the development of new applications of pilot plant scale extraction and formulation processes for natural active bioproducts obtained from various underutilized tropical plants and herbs, we have manufactured water-extracts from Delonix regia flowers, grown in Ivory Coast. These extracts, which contain polyphenols, are traditionally home made and used as healthy bioproducts. They are reddish-coloured due to the presence of anthocyanins. The three major anthocyanins in these extracts have been characterized. The molecular structures were confirmed by LC-SM analysis. Amongst them, two are described for the first time in Delonix regia.

  5. Genetic diversity, structure and differentiation in cultivate walnut (Juglans regia L.)

    Science.gov (United States)

    M. Aradhya; K. Woeste; D. Velasco

    2012-01-01

    An analysis of genetic structure and differentiation in cultivated walnut (Juglans regia) using 15 microsatellite loci revealed a considerable amount of genetic variation with a mild genetic structure indicating five genetic groups corresponding to the centers of diversity within the home range of walnut in Eurasia. Despite the narrow genetic...

  6. Morphological Variation, Heritability and Phenotypic Correlation of Traits Related to the Vigor in Persian Walnut (Juglans regia L.

    Directory of Open Access Journals (Sweden)

    R. Rezaee

    2014-08-01

    Full Text Available Considering frequent observation of low vigor (dwarf and precocious walnut seedlings in some of Iran nurseries, and in order to understand genetic causes of this phenomenon and the effect of parental genotype on the seedling vigor and precocity, two half–sib family tests were conducted using open pollinated seeds of Persian walnut (Juglans regia L. trees with different vigor and bearing habit. Based on the results, significant variations were found within- and between-families in terms of seedling height and diameter, number of nodes and length of internodes in both 45-day-old and one year old seedlings. Moderate to high narrow-sense heritability (0.39-0.88 was estimated for all of the traits, both by between family variance and parent-offspring regression methods. Seedling height had positive correlation with other vigor related traits indicating that measuring only seedling height is adequate to identify families that produce low vigor seedlings. In conclusion, we suggest a simultaneous recurrent selection program for both dwarfing and rooting ability (selection of dwarf/semi-dwarf as well as easy-to-root clones to utilize their advantages in a high-density orchard system.

  7. COMPARISON OF Sr ISOTOPIC RATIOS FROM TWO SOILS NEAR RAVENNA (ITALY USING AQUA REGIA AND TWO-STEP SEQUENTIAL EXTRACTS

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    Francesca Castorina

    2010-08-01

    Full Text Available The Sr-isotope ratios of several samples from a natural and an agricultural soil from Ravenna were determined using aqua regia and the two-step sequential extraction. Results indicate that the two-step extraction can provide the researcher with wider and more precise information on Sr sources, thus being a more suitable methodology for achieving scientific goals than the aqua regia extraction. Lastly, the extracts of hydrochloric acid and aqua regia display similar ranges of δ87Sr, indicating that the two procedures provide comparable information on Sr sources.

  8. Speciation slowing down in widespread and long-living tree taxa: insights from the tropical timber tree genus Milicia (Moraceae).

    Science.gov (United States)

    Daïnou, K; Mahy, G; Duminil, J; Dick, C W; Doucet, J-L; Donkpégan, A S L; Pluijgers, M; Sinsin, B; Lejeune, P; Hardy, O J

    2014-07-01

    The long generation time and large effective size of widespread forest tree species can result in slow evolutionary rate and incomplete lineage sorting, complicating species delimitation. We addressed this issue with the African timber tree genus Milicia that comprises two morphologically similar and often confounded species: M. excelsa, widespread from West to East Africa, and M. regia, endemic to West Africa. We combined information from nuclear microsatellites (nSSRs), nuclear and plastid DNA sequences, and morphological systematics to identify significant evolutionary units and infer their evolutionary and biogeographical history. We detected five geographically coherent genetic clusters using nSSRs and three levels of genetic differentiation. First, one West African cluster matched perfectly with the morphospecies M. regia that formed a monophyletic clade at both DNA sequences. Second, a West African M. excelsa cluster formed a monophyletic group at plastid DNA and was more related to M. regia than to Central African M. excelsa, but shared many haplotypes with the latter at nuclear DNA. Third, three Central African clusters appeared little differentiated and shared most of their haplotypes. Although gene tree paraphyly could suggest a single species in Milicia following the phylogenetic species concept, the existence of mutual haplotypic exclusivity and nonadmixed genetic clusters in the contact area of the two taxa indicate strong reproductive isolation and, thus, two species following the biological species concept. Molecular dating of the first divergence events showed that speciation in Milicia is ancient (Tertiary), indicating that long-living tree taxa exhibiting genetic speciation may remain similar morphologically.

  9. Antiglycation and antioxidation properties of Juglans regia and Calendula officinalis: possible role in reducing diabetic complications and slowing down ageing.

    Science.gov (United States)

    Ahmad, Haroon; Khan, Ibrar; Wahid, Abdul

    2012-09-01

    Accumulation of advanced glycation end products (AGEs) in the body due to the non-enzymatic glycation of proteins and oxidation is associated with aging and diabetes mellitus. In this study we wanted to investigate the antiglycation and antioxidation potential of two medicinal plants: Juglans regia and Calendula officinalis. In-vitro investigation was carried out to discover the antiglycation and antioxidation potential of J. regia and C. officinalis. Using an Ultraviolet Double-beam Spectrophotometer, we evaluated the antiglycation property of the crude methanolic extracts of J. regia and C. officinalis by assessing their ability to inhibit the Maillard reaction. Employing the same instrument we also measured the antioxidation potential of these plant extracts using the nitric oxide (NO) free radical-scavenging assay. J. regia had greater antiglycation ability, with a minimum inhibitory concentration (MIC50) of 28 microg/mL as compared with that of C. officinalis (270 microg/mL). C. officinalis had greater antioxidation potential (26.10, 22.07 and 16.06% at 0.5 mg, 0.25 mg and 0.125 mg, respectively, as compared with 18.15, 16.50 and 16.06% of J. regia, respectively). J. regia and C. officinalis inhibited the Maillard reaction and prevented oxidation in-vitro. Hence, the extracts of these plants could have therapeutic uses in curbing chronic diabetic complications and slowing down aging.

  10. Evaluation of alpha- amylase inhibition by Urtica dioica and Juglans regia extracts.

    Science.gov (United States)

    Rahimzadeh, Mahsa; Jahanshahi, Samaneh; Moein, Soheila; Moein, Mahmood Reza

    2014-06-01

    One strategy for the treatment of diabetes is inhibition of pancreatic α- amylase. Plants contains different chemical constituents with potential for inhibition of α-amylase and hence maybe used as therapeutic. Urtica dioica and Juglans regia Linn were tested for α-amylase inhibition. Different concentrations of leaf aqueous extracts were incubated with enzyme substrate solution and the activity of enzyme was measured. For determination of the type of inhibition, Dixon plot was depicted. Acarbose was used as the standard inhibitor. Both plant extracts showed time and concentration dependent inhibition of α-amylase. 60% inhibition was seen with 2 mg/ml of U. dioica and 0.4 mg/ml of J. regia aqueous extract. Dixon plots revealed the type of α-amylase inhibition by these two extracts as competitive inhibition. Determination of the type of α-amylase inhibition by these plant extracts could provide by successful use of plant chemicals as drug targets.

  11. Effect of Culture Medium in Callogenesis from Adult Walnut Leaves (Juglans regia L. Efecto del Medio de Cultivo en la Callogénesis de Nogal (Juglans regia L. a Partir de Hojas Adultas

    Directory of Open Access Journals (Sweden)

    Fabiola Avilés

    2009-09-01

    Full Text Available To define preliminary aspects of walnut (Juglans regia L. callogenesis in indirect propagation systems, this work analyzed callogenic induction in adult leaves of walnut in broadleaf trees (BTM, Murashige and Skoog (MS Driver Kuniyuki Walnut (DKW and Woody Plant (WPM media. Leaf segments of 1 cm², previously sterilized, were placed in each culture medium, supplemented with 21.4 µM naphtalene acetic acid (NAA and 8.8 µM 6-benzylaminopurine (BAP. A completely random design was used; the experimental unit was a Petri dish with six callus explants. Each treatment was composed of seven Petri dishes. Callogenesis (%, nodular calli (% and histology of calli explants were evaluated at 4 weeks by staining 10 µm slices with safranine-fastgreen. There were no significant differences (α = 0.05 in callogenesis among evaluated media; but nodular calli percentages were significantly higher in BTM (75% and WPM (63%. Only in calli obtained in the BTM medium did the histology show the presence of meristematic zones, but without external expression. These results indicate that the medium influences the morphogenic characteristics of resultant callus. Calli produced in BTM presented better morphogenic potential, with meristems at primary stages of organization.Con el objeto de definir aspectos preliminares de la callogénesis de nogal(Juglans regia L., para establecer, sistemas de propagación vegetativa vía indirecta, este trabajo analizó la inducción callogénica en hojas adultas de nogal, utilizando los medios de cultivo broadleaves tree (BTM, Murashige y Skoog (MS, Driver Kuniyuki Walnut (DKW y Woody Plant (WPM. Se utilizaron segmentos foliares de 1 cm² previamente esterilizados fueron dispuestos en cada medio de cultivo suplementado con 21,4 µM de ácido naftalén acético (ANA y 8,8 µM de 6-bencilaminopurina (BAP. Se utilizó un diseño completamente aleatorio, la unidad experimental correspondió a una placa Petri con seis segmentos foliares. Cada

  12. Pistillate Flower Abcission Symptoms of ‘Serr’ Walnut (Juglans RegiaL. Sintomatología del Aborto en flores Pistiladas de Nogal (Juglans regiaL. ‘Serr’

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    Cristián González R

    2008-06-01

    Full Text Available Pistillate flower abscission (PFA severely affects walnut (Juglans regia L. production, mainly of the cultivar ‘Serr’. A study on symptoms of flower abortion in walnut ‘Serr’, induced by excess or lack of pollen, was carried out following the evolution of flowers and peduncles. Hand pollinated flowers, with different pollen concentrations: 0, 1, 5, 25, 50 and 100% pollen diluted (w/w in talcum powder, showed external and internal abortion symptoms. External symptoms were recorded directly from the tree, while for internal symptoms, flower excisions stained with blue Toluidin-O at 0.05%, were analyzed under an optical microscope. Excess pollen abortion produced flowers with rapid damage. The growth rate was very low, involucre brightness was lost and the stigma turned necrotic, in contrast to the flower aborted from lack of pollen. Normal flowers continued growing to fruit harvest, without losing brightness. Excess pollen abortion induced flower drop, with or without attached peduncle. Two separation zones can be present: the distal and proximal areas of the peduncle. Peduncle scars allowed for differentiating abortion induced from excess or lack of pollen, or other reasons.El aborto en flores postiladas (PFA por exceso de polen que afecta al nogal (Juglans regia L., disminuye considerablemente la producción de nueces, principalmente en el cultivar ‘Serr’. Se estudió la sintomatología del aborto por exceso y falta de polinización en flores y pedúnculo de este cultivar. Para esto se realizó polinización manual, utilizando diferentes concentraciones de polen sobre flores en diferentes estados de receptividad. Las concentraciones se obtuvieron mediante diluciones (peso/peso de polen combinado con talco. Las concentraciones utilizadas fueron 0; 1; 5; 25; 50 y 100% de polen. Se observó la sintomatología externa e interna de la flor, mediante apreciación visual en el árbol y a través de cortes longitudinales en la flor para

  13. Cytotoxicity assay of biosynthesis gold nanoparticles mediated by walnut (Juglans regia) green husk extract

    Science.gov (United States)

    Izadiyan, Zahra; Shameli, Kamyar; Hara, Hirofumi; Mohd Taib, Siti Husnaa

    2018-01-01

    The unique properties of gold nanoparticles (Au-NPs) produce in plant extract make them attractive for use in medical and industrial applications, it is necessary to develop environmentally friendly methods for their synthesis. This can be accomplished by replacing the traditional chemical compounds for the reduction of the gold ions to Au-NPs during synthesis with natural plant extracts or with plasmas atmospheric pressure. Here, the biosynthesis of Au-NPs using the Juglans regia (J. regia) green husk extract was investigated as the reducing and stabilizing agent. The formation of Au-NPs was initially monitored by visual observation and then characterized with the help of various characterization techniques. UV-vis spectroscopy results showed that Au-NPs synthesized using moderate temperature have a blue shifting, good distribution and smaller size compare with Au-NPs fabricated in room temperature. X-ray diffraction (XRD) results revealed the distinctive formation of the crystalline structure of Au-NPs with a spherical shape. According to transmission electron microscopy (TEM), the mean diameter and standard deviation of Au-NPs at room and moderate temperatures were 19.19 ± 4.7 and 14.32 ± 3.24 nm, respectively. The result of Field emission scanning electron microscopy (FESEM) and energy dispersive X-ray (EDX) are in good agreement with each other and confirm that by using the moderate temperature compare to the room temperature the yield of reaction increased. Based on the zeta potential result, Au-NPs has sufficient value for the stability of the solution. According to FTIR spectrum, the J. regia would be coated on the gold ions surface in a successful manner. The non-toxic effect of Au-NPs concentration below 250 μg/ml was observed in the studies of in vitro cytotoxicity on normal and cancerous cell lines, respectively. The dose-dependent toxicity made it a suitable candidate for various medical applications.

  14. Leaching of Metal Ions from Blast Furnace Slag by Using Aqua Regia for CO2 Mineralization

    OpenAIRE

    Jun-Hwan Bang; Seung-Woo Lee; Chiwan Jeon; Sangwon Park; Kyungsun Song; Whan Joo Jo; Soochun Chae

    2016-01-01

    Blast furnace slag (BFS) was selected as the source of Ca for CO2 mineralization purposes to store CO2 as CaCO3. BFS was dissolved using aqua regia (AR) for leaching metal ions for CO2 mineralization and rejecting metal ions that were not useful to obtain pure CaCO3 (as confirmed by XRD analysis). The AR concentration, as well as the weight of BFS in an AR solution, was varied. Increasing the AR concentration resulted in increased metal ion leaching efficiencies. An optimum concentration of 2...

  15. Effects of thinning and mixed plantations with Alnus cordata on growth and efficiency of common walnut (Juglans regia L.

    Directory of Open Access Journals (Sweden)

    Giannini T

    2009-01-01

    Full Text Available Results about the effects of thinning and mixed plantations with Italian alder (Alnus cordata Loisel. on growth and efficiency of common walnut (Juglans regia L. plantations for wood production are reported. The study, carried out for six years on sixteen year old plantations, compared three theses: pure common walnut plantation (pure common walnut; 50% common walnut - 50% Italian alder plantation; 25% common walnut - 75% Italian alder plantation. Beyond annual surveys of girth at breast height, total height, stem volume and biomass, several variables, useful to describe canopy and foliage characteristics such as leaf area index (LAI, leaf biomass and photosynthetic active radiation below the canopy, were recorded. Data collected allowed to compare growth at individual and whole stand level, to calculate the net assimilation rate (NAR and to compare the growth efficiency of the three theses. Mixed plantations performed results significantly higher than the pure plantation in terms of growth, LAI and leaf biomass both before and after experimental thinning. With reference only to common walnut, growth in mixed plantations was higher than the pure plantation with differences ranging from +40% to +100%. More relevant differences among pure common walnut, 50% common walnut and 25% common walnut at canopy and foliage characteristics were observed, with LAI values of 1.07, 3.96 e 4.35 m2 m-2 respectively. Results accounted for a general positive effect of Italian alder as accessory tree species on growth and efficiency of mixed plantations, mainly due to the good performances induced in common walnut trees. Such performances were enabled by the good ecological integration between the two species and by the positive effects of N-fixing activity of Italian alder. Experimental thinning applied, although heavy, did not biased the dynamics observed before thinning both in pure and mixed plantations. In addition, they had positive effects on common walnut

  16. The Effect of the Redox Potential of Aqua Regia and Temperature on the Au, Cu, and Fe Dissolution from WPCBs

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    Heini Elomaa

    2017-09-01

    Full Text Available Constant growth in waste electrical and electronic equipment (WEEE levels necessitates the development of new, commercially viable recycling processes. Waste printed circuit boards (WPCBs are a sub-group of WEEE that are of increasing interest due to their relatively high level of valuable metal content including Au, Ag, and platinum group metals (PGMs. Currently, precious metals like gold are mainly recycled from WEEE streams through copper smelting/refining; however, the possibility to peel gold from WPCBs prior to smelting, could offer advantages for recycling. In this study, the suitability of aqua regia for selective or partially selective gold leaching from un-crushed WPCBs was investigated. The redox potential of aqua regia solutions and the dissolution efficiencies of Au, Cu, and Fe from WPCBs were investigated at different temperatures (40–80 °C and concentrations (2–32% in batch leaching tests. The redox potential of aqua regia solution was found to depend on concentration and temperature. It is suggested that Au dissolution in aqua regia requires dissolved Cu2+ ions originating from the WPCB material to work. Au extraction (>50% was shown to require a redox potential >700 mV with [Cu2+] > 2500 ppm, as a potential >850 mV alone was insufficient without cupric ions. Significant amounts of Au and Cu could be dissolved with only minor Fe dissolution at ≥8% aqua regia at 80 °C. Results suggest that leaching of uncrushed WPCBs in 8% aqua regia (T = 80 °C can provide the opportunity for partial Au recovery prior to further processing.

  17. Evaluation of alpha- amylase inhibition by Urtica dioica and Juglans regia extracts

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    Mahsa Rahimzadeh

    2014-06-01

    Full Text Available Objective(s:One strategy for the treatment of diabetes is inhibition of pancreatic α- amylase. Plants contains different chemical constituents with potential for inhibition of α-amylase and hence maybe used as therapeutic. Materials and Methods: Urtica dioica and Juglans regia Linn were tested for α-amylase inhibition. Different concentrations of leaf aqueous extracts were incubated with enzyme substrate solution and the activity of enzyme was measured. For determination of the type of inhibition, Dixon plot was depicted. Acarbose was used as the standard inhibitor. Results: Both plant extracts showed time and concentration dependent inhibition of α-amylase. 60% inhibition was seen with 2 mg/ml of U. dioica and0.4 mg/ml of J. regia aqueous extract. Dixon plots revealed the type of α-amylase inhibition by these two extracts as competitive inhibition. Conclusion: Determination of the type of α-amylase inhibition by these plant extracts could provide by successful use of plant chemicals as drug targets.

  18. Prenylated 2-arylbenzofuran derivatives with potent antioxidant properties from Chlorophora regia (Moraceae).

    Science.gov (United States)

    Kyekyeku, James Oppong; Kusari, Souvik; Adosraku, Reimmel Kwame; Zühlke, Sebastian; Spiteller, Michael

    2016-01-01

    Extracts of Chlorophora regia are frequently used in Ghana in traditional medicine. There is, however, no reported data on the chemical composition of the plant. Comprehensive phytochemical investigation of the stem bark of C. regia resulted in the isolation of three new prenylated 2-arylbenzofuran derivatives, regiafuran A-C (1-3), and one new prenylated flavonol (4), together with fifteen known compounds (5-19). Their structures were elucidated by combined spectroscopic analysis of their NMR and HRESI-MS(n) data. Compounds 1, 2, 5, 9 and 15 exhibited remarkable free radical scavenging properties with IC50 values of 1.9 μg/ml, 2.4 μg/ml, 2.2 μg/ml, 2.1 μg/ml and 1.8 μg/ml, respectively, compared to the standard trolox (IC50 1.1 μg/ml). The isolated compounds did not, however, show any anti-inflammatory potential when tested using a PGE2 (prostaglandin E2) competitive enzyme immunoassay. Copyright © 2015 Elsevier B.V. All rights reserved.

  19. Delonix regia Leaf Extract (DRLE: A Potential Therapeutic Agent for Cardioprotection.

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    Lung-Shuo Wang

    Full Text Available Delonix regia (Boj. Ex. Hook is a flowering plant in the pea family found in tropical areas and its leaves are used informally to treat diseases in folk medicine. However, the cardioprotective effects in this plant are still unclear. In this study, we found that the Delonix regia leaf extract (DRLE (400 mg/kg/d can reduce the mortality rate in an isoproterenol (ISO-induced heart injury and hypertrophy mouse model. Decreased serum levels of creatine phosphokinase, LDH, GOT, TNF-alpha and increased nitric oxide levels were found in DRLE-treated ISO-injured mice. In the in vitro study, the porcine coronary artery exhibited vasodilation effect induced by DRLE in a dose-dependent manner. In the DRLE toxic test, overdose of DRLE showed the high safety in normal mice and may have the ability to remove the metabolic wastes in blood. In conclusion, we demonstrated for the first time that DRLE has the cardioprotective effects by activating the vasodilation through NO pathway and preventing the myocyte injury via inhibition of TNF-alpha pathway. We suggest that DRLE may act as a promising novel herbal medicine for cardioprotection.

  20. Pharmacological and Genotoxic Properties of Polyphenolic Extracts of Cedrela odorata L. and Juglans regia L. Barks in Rodents

    Science.gov (United States)

    Almonte-Flores, Dulce Carolina; Paniagua-Castro, Norma; Escalona-Cardoso, Gerardo; Rosales-Castro, Martha

    2015-01-01

    Evaluation of the phenolic compounds and antioxidant activity of Cedrela odorata L. and Juglans regia L. bark extracts was performed in vitro. Juglans regia showed greater extract concentration and higher antioxidant activity. Hypoglycemic activity in rats was assessed by generating a glucose tolerance curve and determining the area under the curve (AUC). Diabetes was later induced by an injection with streptozotocin (65 mg/kg of b.w.) and confirmed after 24 hours. The extract was administered (200 mg/kg b.w.) over 10 days, and blood glucose was monitored and compared with a control group. The glucose AUC showed a hypoglycemic effect of J. regia and C. odorata in normal rats. Both extracts reduced hepatic lipid peroxidation in diabetic rats. Polyphenolic extracts reduced cholesterol levels in a hypercholesterolemic mouse model and decreased hepatic lipid peroxidation. Polyphenolic extract doses of 100 and 200 mg/kg b.w. were administered alone or with cyclophosphamide (CPA) 50 mg/kg ip, which was used as a positive control. Analyses were performed using leukocytes in a comet assay after 4 and 24 h of treatment. Genotoxic effects were evaluated by the comet assay, which showed that while J. regia extract had no effect, C. odorata extract induced slight damage at 200 mg/kg, with the formation of type 0 and 1 comets. PMID:25945104

  1. Pharmacological and Genotoxic Properties of Polyphenolic Extracts of Cedrela odorata L. and Juglans regia L. Barks in Rodents

    Directory of Open Access Journals (Sweden)

    Dulce Carolina Almonte-Flores

    2015-01-01

    Full Text Available Evaluation of the phenolic compounds and antioxidant activity of Cedrela odorata L. and Juglans regia L. bark extracts was performed in vitro. Juglans regia showed greater extract concentration and higher antioxidant activity. Hypoglycemic activity in rats was assessed by generating a glucose tolerance curve and determining the area under the curve (AUC. Diabetes was later induced by an injection with streptozotocin (65 mg/kg of b.w. and confirmed after 24 hours. The extract was administered (200 mg/kg b.w. over 10 days, and blood glucose was monitored and compared with a control group. The glucose AUC showed a hypoglycemic effect of J. regia and C. odorata in normal rats. Both extracts reduced hepatic lipid peroxidation in diabetic rats. Polyphenolic extracts reduced cholesterol levels in a hypercholesterolemic mouse model and decreased hepatic lipid peroxidation. Polyphenolic extract doses of 100 and 200 mg/kg b.w. were administered alone or with cyclophosphamide (CPA 50 mg/kg ip, which was used as a positive control. Analyses were performed using leukocytes in a comet assay after 4 and 24 h of treatment. Genotoxic effects were evaluated by the comet assay, which showed that while J. regia extract had no effect, C. odorata extract induced slight damage at 200 mg/kg, with the formation of type 0 and 1 comets.

  2. The effects of hydroalcoholic extract of Juglans regia leaf on histological changes of Langerhans islet in diabetic rats model

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    Jamshid Mohammadi

    2012-12-01

    Full Text Available Background: It has been shown that the Juglans regia leaves have hypoglycemic, diuretic and blood pressure reduction properties. The objective of the present study was to examine the histopathology effects of Juglans regia leaves on diabetes mellitus in rats. Material and Methods: Forty-eight Wistar rats (150- 200 g were randomized into six groups of 8 animals. Groups III, IV, V and VI received intraperitoneal injection of streptozotocin to make diabetic model. Blood glucose was measured by glucometer after 72 hours. After 10 days, Group II, IV and V received 400, 200 and 400 mg/kg Juglans regia extract, respectively and group VI treated with 4 mg/kg glybenclamid for four weeks. Group I were fed with normal diet and group III received distilled water (diabetic control. The body weight and blood glucose were measured in every week. The number of β cells and diameter of islets of Langerhans were determined using hematoxylin-floxin staining. The collected data was analyzed by the SPSS software using one-way ANOVA. Results: The number of β cells and diameter of islets decreased significantly in diabetic control compare to the normal group. Treatment with 400 mg/kg of Juglans regia extract showed a significant decrease in blood glucose, a significant increase in diameter of islets and number of β cells compared to diabetic control group. The pancreas / body weight ratio increased in diabetic rats compare to the treatment group. Conclusion: The administration of Juglans regia extract can cause recovery of β cells number and improve the size of islets of Langerhans in diabetic model rats.

  3. Genetic diversity among Juglans regia L. genotypes assessed by morphological traits and microsatellite markers

    Energy Technology Data Exchange (ETDEWEB)

    Mahmoodi, R.; Rahmani, F.; Rezaee, R.

    2013-06-01

    In this study, genetic diversity was assayed among 16 accessions and five cultivars of Persian walnut (Juglans regia L.) using morphological traits and nine simple sequence repeat (SSR) markers. Samples were collected from Agriculture Research Center of Urmia city (North West Iran). Study on important morphological traits revealed genetic similarity of -0.6 to 0.99 based on CORR coefficient. The microsatellite marker system produced 34 alleles in range of 160-290 bp. The minimum (2) and maximum (7) number of alleles were obtained from WGA71 and WGA202 genetic loci, respectively. The mean number of alleles per locus was 4.25. Jaccards similarity coefficient ranged from 0.13 to 0.76. The results of this paper indicate high diversity among these genotypes which could be used for breeding management. (Author) 28 refs.

  4. Characterization of Carya illinoiensis and Juglans regia oils obtained by different extraction systems

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    Tainara Costa-Singh

    2015-05-01

    Full Text Available It is extremely important to evaluate the extraction processes of vegetable oils used in food, considering that the nuts are rich sources of triacylglycerols. Thus, the present study aimed at comparing the methods of solvent extraction and extraction by pressing of the lipid fractions of walnut (Juglans regia and pecan nut (Carya illinoensis, in order to elucidate their influence on the content of bioactive substances. The samples were analyzed regarding fatty acid profile, tocopherols, phytosterols, carotenoids, and phenolic compounds, presenting relevant quantities of these bioactive substances. It was found that the extraction of oils by pressing minimized degradation of tocopherol when compared to solvent extraction. However, solvent extraction is more efficient to extract bioactive compounds such as phytosterols, carotenoids, and phenolic compounds.

  5. Nutraceutical Potential of Tinctures from Fruits, Green Husks, and Leaves of Juglans regia L.

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    Urszula Gawlik-Dziki

    2014-01-01

    Full Text Available The aim of this study was to assess the phenolic composition and nutraceutical potential of tinctures from fruits in two stages of maturity (F3, younger; F25, older, green husks (GH, and leaves (L of Juglans regia L. In all extracts gallic, protocatechuic, 3-caffeoylquinic, 3-ρ-coumaroylquinic, 4-caffeoylquinic, 4-ρ-coumaroylquinic, and ρ-coumaric acids and quercetin-3-O-deoxyhexoside were detected using UPLC-MS technique. Caffeic acid hexoside I and quercetin-3-O-deoxyhexoside I have been identified in GH tincture. The highest ability to chelate Fe2+ was observed for GH tincture (EC50 = 71.01±3.55 mg FM/mL, whereas the lowest was observed (EC50 = 131.06±6.55 mg FM/mL for F3 tincture. The highest reducing power was found for F3 and F25 (EC50 = 32.47±1.53 and 36.07±1.72 mg FM/mL, resp.. Ability of tinctures to prevent lipids against oxidation was relatively low. The highest activity (EC50 = 126.49±6.32 mg FM/mL was determined for F25. Tested tinctures showed relatively high antiradical activity—EC50 values ranged from 100.56±5.03 to 129.04±6.45 mg FM/mL for L and F25, respectively. The results obtained suggest that J. regia can be a source of bioactive compounds with antioxidant properties.

  6. IMMUNOSTIMULATORY EFFECT OF METHANOL EXTRACT OF FLAMBOYANT LEAF [Delonix regia (Boj. ex Hook. Raf.] IN MICE

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    Kartini Eriani

    2018-04-01

    Full Text Available Abstract. Flamboyant [Delonix regia (Boj. ex Hook Raf.] leaf contains flavonoid compounds that are expected to have immunostimulatory effect. This research was done to determine the effect of flamboyant leaf extract on immune response by accessing the activity of immune cells and capability test the extract as immunostimulant in mice. Leaf extraction was done by maceration using methanol in the Laboratory of Biology of Chemistry Department, Faculty of Mathematics and Natural Sciences of Syiah Kuala University whereas animal treatment and testing were carried out Micro-technique Laboratory of Biology Department of the same faculty. This research used 20 male mice strain Swiss-Webster aged 7-8 weeks were randomly assigned to 4 treatment groups with five replications each. Group 1 (P0 was untreated control; group 1-3 were mice administration flamboyant leaf extract 250 mg/kg BW (P1, 500 mg/kg BW (P2, and 750 mg/kg BW (P3 per oral. The treatments were given for 14 days after one week of adaptation period. Blood samples were collected before and after extract treatment and used for leukocyte count analysis. Phagocytosis activity was accessed by carbon clearance assay on day 15. At the end of the study, all mice were sacrificed for spleen weight analysis. Data obtained was analyzed by Analysis of Variance followed by Tukey test (Leukocyte count and spleen weight or regression analysis (carbon clearance. The results showed a flamboyant leaf extract administration resulted in increased leukocyte counts that were significantly different (p<0.05 between treatment groups.  Phagocytosis test indicated the extract had moderate to strong immunostimulatory effect whereas spleen weight analysis did not show any difference among treatment groups. In conclusion, flamboyant leaf methanol extract was able to increase immune cells and had potential immunostimulatory activity in mice. Keywords: Delonix regia, immunostimulant, leukocytes, lymphocyte proliferation.

  7. Pengaruh Etsa Kimia dengan Akua Regia terhadap Kekuatan Tarik Perlekatan Bahan Resin Akrilik pada Gigi Tiruan Kerangka Logam

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    M Th Esti Tjahjanti

    2012-07-01

    Full Text Available Latar belakang. Bahan yang dipakai untuk pembuatan Gigi Tiruan Sebagian (GTS, antara lain: resin akrilik, kerangka logam, kombinasi kerangka logam dengan resin akrilik. Resin akrilik adalah bahan plat gigi tiruan yang memliki warna dan translusensi baik tetapi sifat mekanismenya tidak ideal, tidak tahan terhadap abrasi, dan dapat terjadi perubahan dimensi. GTS kerangka logam cukup kuat, tetapi estetis kurang memuaskan sehingga perlu kombinasi kerangka logam dan resin akrilik. Peningkatan daya lekat antara kedua bahan tersebut memerlukan retensi, teknik etsa kimia dengan akua regia dapat membuat retensi mikro pada logam. Tujuan penelitian untuk mengetahui etsa kimia dengan akua regia terhadap kekuatan tarik perlekatan bahan resin akrilik pada gigi tiruan kerangka logam. Metode penelitian. Penelitian dilakukan pada 20 subyek penelitian berupa plat kobalt kromium dengan mesh dilekati resin akrilik (10x10x2 mm yeng dilekati mesh ukuran (10x8x1 mm. Subyek penelitian dibagi 2 kelompok: 10 subyek plat kobalt kromium dengan mesh dilekati resin akrilik (20x10x2 mm dan 10 subyek penelitian plat kobalt kromium dengan mesh dietsa dengan akua regia 65% selama 5 menit, kemudian dilekati dengan resin akrilik (20x10x2 mm. dilakukan uji kekuatan tarik menggunakan Torsee’s universal testing Machine dengan ukuran kg/mm2, kemudian hasil analisa dengan t-test. Hasil Penelitian menunjukkan rata-rata kekuatan tarik perlekatan bahan resin akrilik dengan kerangka logam yang tidak dietsa lebih kecil daripada yang dietsa kimia dengan akua regia. Terdapat perbedaan yang bermakna kekuatan tarik perlekatan resin akrilik dengan kerangka logam yang tidak dietsa dengan yang dietsa secara kimia dengan akua regia (p<0,05. Kesimpulan. Etsa kimia dengan akua regia pada kerangka logam, meningkatan perlekatan bahan resin akrilik pada gigi tiruan kerangka logam.   Background. Materials used in making removable partial denture (RPD can be acrylic resins, metal plate, combination

  8. A comparative fluctuating asymmetry study between two walnut (Juglans regia L.) populations may contribute as an early signal for bio-monitoring

    NARCIS (Netherlands)

    Kourmpetis, Y.I.A.; Aravanopoulos, F.A.

    2010-01-01

    Developmental stability, the ability of an individual to eliminate environmental disturbances while expressing a heritable phenotypic trait, was compared in two walnut (Juglans regia L.) populations, a natural and an artificial. Bilateral leaf morphometrics were used to estimate fluctuating

  9. Determination of gold of No. 501 uranium deposits and soil samples by cold leaching gold in dilute aqua regia and collection on activated charcoal

    International Nuclear Information System (INIS)

    Shen Maogen; Yao Liying.

    1989-01-01

    The gold determination method is described by cold leaching gold in dilute aqua regia and collection on activated charcoal and presents the results obtained in determining gold of uranium deposits and soil samples

  10. Antibacterial Activity of the Hydro-Alcoholic Extract of Juglans regia L. Stem Bark on Human Bacterial Infection

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    Moori Bakhtiari N.* PhD,

    2015-12-01

    Full Text Available Aims Bovine mastitis continues to be the most costly disease to the dairy farmers. It dominates in Iran as one of the most prevalent diseases in dairy cattle among the dairy farms. Mastitis treatment with antibiotics leads to the development of antibiotic resistant strains and consumer health problem.This study was performed for the first time to analyze in vitro effects of hydro-alcoholic extract of Juglans regia L. stem bark on 6 mastitis pathogens. Materials & Methods the susceptibility of 6 strains of bacteria (Staphylococcus aureus, Escherichia coli, Klebsiella pneumoniae, Streptococcus spp., Pasteurella multocida and Mannheimia haemolytica were analyzed against hydro-alcoholic extract of Juglans regia L. stem bark with minimum inhibitory concentration (MIC and minimum bactericidal concentration (MBC methods. Findings Hydro-alcoholic extract did not have antibacterial effects on E. coli and K. pneumoniae. Minimum inhibitory concentration for S. aureus, P. multocida, M. haemolytica and Streptococcus spp. was 62.5mg/ml of hydro-alcoholic extract. There was not any significant response with concentrations below 100mg/disc on S. aureus, Streptococcus species, P. multocida and M. haemolytica. Minimum bactericidal concentration of this extract was 100mg/ml in all isolates. Conclusion Juglans regia L. have some antibacterial effects on S. aureus, P. multocida, M. haemolytica and Streptococcus species.

  11. Flavonoids in Juglans regia L. Leaves and Evaluation of In Vitro Antioxidant Activity via Intracellular and Chemical Methods

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    Ming-Hui Zhao

    2014-01-01

    Full Text Available Flavonoids are rich in Juglans regia L. leaves. They have potent antioxidant properties, which have been related to regulating immune function and enhancing anticancer activity. Herein, qualitative and quantitative determination of flavonoids from J. regia leaves was carried out using high performance liquid chromatography coupled with tandem mass spectrometry with electrospray ionization and negative ion detection (HPLC-ESI-MS/MS by comparison of the retention times and mass spectral fragments with standard substances or related literatures. Seventeen compounds were identified and major components are quercetin-3-O-rhamnoside (453.11 μg/g, dry weight, quercetin-3-O-arabinoside (73.91 μg/g, quercetin-3-O-xyloside (70.04 μg/g, kaempferol-O-pentoside derivative (49.04 μg/g, quercetin-3-O-galactoside (48.61 μg/g, and kaempferol-O-pentoside (48.46 μg/g. The in vitro intracellular antioxidation indicated that flavonoids from J. regia leaves could reduce the reactive oxygen species (ROS level in RAW264.7 cells and showed good radical scavenging activities. These results proved to be more related to the flavonoids that could be considered in the design of new formulations of dietary supplements or functional foods.

  12. Fatty acid composition of some walnut ( Juglans regia L. cultivars from east Anatolia

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    Akgul, Attila

    2005-12-01

    Full Text Available In this study, the fatty acid composition of different walnut (Juglans regia L. cultivars grown in Adilcevaz in east Anatolia was determined. The total oil content of the walnuts ranged from 65.00 ± 0.06 to 70.00 ± 0.58 %. The oleic acid content of the oils ranged from 22.63 to 27.27 % of the total fatty acids while the linoleic acid and linolenic contents ranged from 49.93 to 54.41 % and 14.32 to 17.82 % respectively. The palmitic acid content of the walnuts ranged from 5.61 % to 5.82 % while there was a trace amount of miristic acid (En este estudio se ha determinado la composición en ácidos grasos de diferentes cultivos de nueces ( Juglans regia L. producidos en Adilcevaz en el Este de Anatolia. El contenido de aceite total de las nueces osciló entre 65.00 ± 0.06 y 70.00 ± 0.58 %. El contenido en ácido oleico varió desde 22.63 a 27.27 % respecto a los ácidos grasos totales mientras que los contenidos en ácido linoleico y linolénico variaron desde 49.93 hasta 54.41 % y desde 14.32 hasta 17.82 % respectivamente. El contenido en ácido palmítico de las muestras de nueces estuvo comprendido entre 5.61 y 5.82 % mientras que de ácido miristico solo se encontraron trazas ( < 0.1 %. Finalmente, los resultados de los ácidos grasos indicaron que los cultivos de nueces del Este de Anatolia son distintos en cuanto a su perfil de ácido linolenico. Estos resultados pueden ser significativos para estudios de selección en orden a identificar mejor las variedades de nueces para dietas saludables.

  13. Parasitic macrofungi (Basidiomycetes on fruit shrubs and trees in the Tarnów town (S Poland

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    Marcin Piątek

    2014-08-01

    Full Text Available Results of 6 years of research carried out in the Tarnów town, southern Poland, are presented. Total number of 27 species of Basidiomycetes were recorded on 7 species of fruit shrubs and trees. Some of them were found on hosts new for Poland, on Malus domestica - Abortiporus biennis, Ganoderma australe, Meripilus giganteus, Stereum hirsutum and Volvariella bombycina; on Juglans regia - Ganoderma applanalum and Hineola auricula-judae.

  14. Tree Contractions and Evolutionary Trees

    OpenAIRE

    Kao, Ming-Yang

    2001-01-01

    An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of species. An agreement subtree of two evolutionary trees is an evolutionary tree which is also a topological subtree of the two given trees. We give an algorithm to determine the largest possible number of leaves in any agreement subtree of two trees T_1 and ...

  15. Comparison of Juglans regia L. bare-root nursery stocks for plantations: morphological characterization

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    Tani A

    2007-01-01

    Full Text Available Good results in plantations are strictly related to the fitness of the nursery stock. Plant fitness, or quality, depends on inherent genetic characters and on physiological and physical (dimensional, morphological and nutritional characteristics. In arboriculture for wood production the role of stock quality is essential for a prompt expression of plant growth potential. So the necessity to define stock quality standards is widely recognized, though is still discussed how to assess stock cultural value by characteristics easy to measure. First step in such activities is to individuate in the above-ground part of the plantlets some traits related to the root system development. The study was carried out in two public forest nurseries (property of Regione Piemonte on 163 Juglans regia seedlings and transplants produced for wood plantations. In order to evaluate Walnut nursery stock production, different kinds of bare-root seedlings and transplants have been compared. For each kind, shoot and root system dimensional and morphological traits have been investigated after assignment of plants in 3 dimensional (height categories. Relations between shoots and roots traits have been studied to allow a visual evaluation of nursery plants based on data easy to collect. This study is to be considered a preliminary survey in the evaluation of stock quality based on field performance.

  16. Comparative study of functional properties of eight walnut (Juglans regia L. genotypes

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    İnci CERİT

    Full Text Available Abstract Eight walnut (Juglans regia L. genotypes were assessed for the glutathione (GSH and total phenolic contents (TPC, as well as their antioxidant capacities. The GSH contents were between 1.1 and 7.2 mg 100 g-1. The TPC contents ranged from 33 to 50.3 mg GAE g-1, while the ferric ion reducing antioxidant power (FRAP values ranged from 156 to 302 mg FeSO4 g-1. A strong correlation (r2=0.8258 was determined between the FRAP values and the TPC. Cupric ion reducing antioxidant capacity (CUPRAC values ranged from 13 to 35 mg trolox g-1. The correlation between the CUPRAC values and the GSH contents was weak (r2=0.2069. The walnut extracts (0.2 mg mL-1 concentration showed 16.2-40% DPPH (2,2-diphenyl-1-picrylhydrazyl scavenging activity. A strong correlation between DPPH-TPC was determined (r2=0.8538, and it was concluded that the TPC makes the most important contribution to the antioxidant capacity of the walnut. Additionally, the walnut may be appraised, in view of its nutritional value and health benefits, by considering the GSH content revealed in the current study.

  17. Maternal feeding with walnuts (Juglans regia improves learning and memory in their adult pups

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    Majid Asadi-Shekaari

    2013-07-01

    Full Text Available Objective: Walnut (Juglans Regia is a domestic fruit of Iran. Walnut kernel (WK has many beneficial constituents such as unsaturated fatty acids, antioxidants, and vitamin E. Scientific studies have shown that fatty acids and vitamin E can modulate learning and memory processes. The aim of the present work was to study effects of walnut consumption by mothers during pregnancy and lactation on learning and memory in adult rat offsprings. Materials and Methods: The animals were divided into three groups: control (fed with ordinary food, 20 g daily, gestation (fed with WK, 6% of food intake during pregnancy, and gestation and lactation (fed with WK, 6% of food intake during gestation and lactation. Morris water maze test was performed for their adult offsprings. Results: The results showed that there was a significant difference in learning and memory of rat offsprings between experimental and control groups. Conclusion: These data may indicate that feeding mothers with WK results in improvement in learning and memory of their offsprings.

  18. Genetic Diversity of Walnut (Juglans Regia L. in the Eastern Italian Alps

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    Massimo Vischi

    2017-03-01

    Full Text Available Juglans regia L. is distributed primarily across temperate and subtropical regions of the Northern Hemisphere. During the last glaciation, the species survived in refugial areas that in Europe included the Balkans and the Italian peninsula, two areas joined by a corridor represented by the Friuli Venezia Giulia region, where two germplasm reservoirs met and likely intercrossed during re-colonization after the last glaciation. In this work, two hundred and fifteen wild accessions native to the area were sampled, georeferenced, and genotyped with 20 microsatellite loci selected from the literature. The local accessions of this study displayed moderate genetic diversity with 80 alleles identified. The number of alleles/loci was 4.0 (4.7 alleles for the genomic SSRs (Simple Sequence Repeats and 2.7 alleles per EST (Expressed Sequence Tag-derived SSR, on average. An analysis of molecular variance (AMOVA revealed that most of the molecular diversity was between individuals (nearly 98% of variation explained. The model-based clustering algorithms implemented either in STRUCTURE and GENELAND software revealed two clusters: The first one encompassed most of the samples and showed a great genetic admixture throughout the five sampling areas defined on the base of orographic characteristics of the region. The second cluster represented a small island with three samples traced back to an introduction from Russia at the beginning of the 20th century.

  19. Spring bud growth depends on sugar delivery by xylem and water recirculation by phloem Münch flow in Juglans regia.

    Science.gov (United States)

    Tixier, Aude; Sperling, Or; Orozco, Jessica; Lampinen, Bruce; Amico Roxas, Adele; Saa, Sebastian; Earles, J Mason; Zwieniecki, Maciej A

    2017-05-09

    During spring, bud growth relies on long-distance transport of remotely stored carbohydrates. A new hypothesis suggests this transport is achieved by the interplay of xylem and phloem. During the spring, carbohydrate demand of developing buds often exceeds locally available storage, thus requiring the translocation of sugars from distant locations like limbs, stems and roots. Both the phloem and xylem have the capacity for such long-distance transport, but their functional contribution is unclear. To address this ambiguity, the spatial and temporal dynamics of carbohydrate availability in extension shoots of Juglans regia L. were analyzed. A significant loss of extension shoot carbohydrates in remote locations was observed while carbohydrate availability near the buds remained unaffected. This pattern of depletion of carbohydrate reserves supports the notion of long-distance translocation. Girdling and dye perfusion experiments were performed to assess the role of phloem and xylem in the transport of carbohydrate and water towards the buds. Girdling caused a decrease in non-structural carbohydrate concentration above the point of girdling and an unexpected concurrent increase in water content associated with impeded xylem transport. Based on experimental observations and modeling, we propose a novel mechanism for maintenance of spring carbohydrate translocation in trees where xylem transports carbohydrates and this transport is maintained with the recirculation of water by phloem Münch flow. Phloem Münch flow acts as a pump for generating water flux in xylem and allows for transport and mobilization of sugars from distal locations prior to leaves photosynthetic independence and in the absence of transpiration.

  20. Protective effect of Juglans regia L. against ultraviolet B radiation induced inflammatory responses in human epidermal keratinocytes.

    Science.gov (United States)

    Muzaffer, Umar; Paul, V I; Prasad, Nagarajan Rajendra; Karthikeyan, Ramasamy; Agilan, Balupillai

    2018-03-15

    Juglans regia L. has a history of traditional medicinal use for the treatment of various maladies and have been documented with significant antioxidant and antiinflammatory properties. Although all parts of the plant are medicinally important, but male the flower of the plant has not been yet investigated against the photo-damage. The present study, we sought to determine the photoprotective effect of the male flower of J. regia L. against ultraviolet-B radiation-induced inflammatory responses in human skin cells. The profile of pharmacological active compounds present in the male flower of J. regia was analyzed by GC-MS. Then, the antioxidant property of methanolic extract of J. regia (MEJR) was analyzed by in vitro free radical scavenging assays. Further, we analyzed the sun protection factor of this extract by spectrophotometry. Moreover, we investigated the photoprotective effect of MEJR against UVB induced inflammatory signaling in human epidermal cells. Human skin epidermal keratinocytes (HaCaT) were pretreated with the MEJR (80 µg/ml), 30 min prior to UVB-irradiation at a dose of 20 mJ/cm 2 and were investigated for lipid peroxidation, enzymatic antioxidants activity, apoptosis and inflammatory markers expression level. The GC-MS results showed the presence of good amount of pharmacologically active compounds in the MEJR. We observed that the MEJR possess significant free radical scavenging activity and it was comparable with standard antioxidants. Further, the MEJR exhibits 8.8 sun-protection-factor (SPF) value. Pretreatment with MEJR, 30 min prior to UVB-irradiation, prevented ROS generation, lipid peroxidation and restored the activity of antioxidant status in HaCaT cells. Moreover, MEJR pretreatment significantly prevented UVB activated inflammatory markers like TNF-α, IL-1, IL-6, NF-κB, COX-2 in HaCaT. The present findings suggest that MEJR exhibit photoprotective effects and hence it may be useful for the treatment of inflammation related

  1. Testing founder effect speciation: Divergence population genetics of the Spoonbills Platalea regia and Pl. minor (Threskiornithidae, Aves)

    Science.gov (United States)

    Yeung, Carol K.L.; Tsai, Pi-Wen; Chesser, R. Terry; Lin, Rong-Chien; Yao, Cheng-Te; Tian, Xiu-Hua; Li, Shou-Hsien

    2011-01-01

    Although founder effect speciation has been a popular theoretical model for the speciation of geographically isolated taxa, its empirical importance has remained difficult to evaluate due to the intractability of past demography, which in a founder effect speciation scenario would involve a speciational bottleneck in the emergent species and the complete cessation of gene flow following divergence. Using regression-weighted approximate Bayesian computation, we tested the validity of these two fundamental conditions of founder effect speciation in a pair of sister species with disjunct distributions: the royal spoonbill Platalea regia in Australasia and the black-faced spoonbill Pl. minor in eastern Asia. When compared with genetic polymorphism observed at 20 nuclear loci in the two species, simulations showed that the founder effect speciation model had an extremely low posterior probability (1.55 × 10-8) of producing the extant genetic pattern. In contrast, speciation models that allowed for postdivergence gene flow were much more probable (posterior probabilities were 0.37 and 0.50 for the bottleneck with gene flow and the gene flow models, respectively) and postdivergence gene flow persisted for a considerable period of time (more than 80% of the divergence history in both models) following initial divergence (median = 197,000 generations, 95% credible interval [CI]: 50,000-478,000, for the bottleneck with gene flow model; and 186,000 generations, 95% CI: 45,000-477,000, for the gene flow model). Furthermore, the estimated population size reduction in Pl. regia to 7,000 individuals (median, 95% CI: 487-12,000, according to the bottleneck with gene flow model) was unlikely to have been severe enough to be considered a bottleneck. Therefore, these results do not support founder effect speciation in Pl. regia but indicate instead that the divergence between Pl. regia and Pl. minor was probably driven by selection despite continuous gene flow. In this light, we

  2. Crystallization and preliminary X-ray crystallographic analysis of polyphenol oxidase from Juglans regia (jrPPO1)

    Energy Technology Data Exchange (ETDEWEB)

    Zekiri, Florime; Bijelic, Aleksandar; Molitor, Christian; Rompel, Annette, E-mail: annette.rompel@univie.ac.at [Universität Wien, Althanstrasse 14, 1090 Wien (Austria)

    2014-05-28

    The crystallization and preliminary X-ray crystallographic analysis of a plant PPO exhibiting monophenolase activity from J. regia (jrPPO1) in its active form (Asp{sup 101}–Arg{sup 445}) are reported. Tyrosinase is a type 3 copper enzyme that catalyzes the ortho-hydroxylation of monophenols to diphenols as well as their subsequent oxidation to quinones, which are precursors for the biosynthesis of melanins. The first plant tyrosinase from walnut leaves (Juglans regia) was purified to homogeneity and crystallized. During the purification, two forms of the enzyme differing only in their C-termini [jrPPO1(Asp{sup 101}–Pro{sup 444}) and jrPPO1(Asp{sup 101}–Arg{sup 445})] were obtained. The most abundant form jrPPO1(Asp{sup 101}–Arg{sup 445}), as described in Zekiri et al. [Phytochemistry (2014 ▶), 101, 5–15], was crystallized, resulting in crystals that belonged to space group C121, with unit-cell parameters a = 115.56, b = 91.90, c = 86.87 Å, α = 90, β = 130.186, γ = 90°, and diffracted to 2.39 Å resolution. Crystals were only obtained from solutions containing at least 30% polyethylene glycol 5000 monomethyl ether in a close-to-neutral pH range.

  3. Juglans regia L., phenotypic selection and assessment of genetic variation within a simulated seed orchard

    Directory of Open Access Journals (Sweden)

    Fulvio Ducci

    2010-12-01

    Full Text Available Normal 0 14 false false false MicrosoftInternetExplorer4 Noble hardwoods are very important for the Italian furniture industry. Since 1985, approximately 170,000 ha have been planted in Italy with noble hardwoods. Among them, about 50% of species are represented by walnuts. Walnut (Juglans regia L., not native in Italy, has been the focus of a substantial research effort for breeding and improvement programmes. The priority has been to preserve the in situ genetic resource still existing after intensive felling. Phenotypes suitable for timber production showing important traits such as straight stem, nice branch architecture, dominance and adaptation (phenology have needed to be developed and selected. In order to reach this goals, selection of valuable progenies and the evaluation of the interaction genotype x environment, methods based essentially on a multi-trait Selection Index, were developed. Studies have been undertaken also to measure the variation of phenological traits, more correlated to traits valuable for architecture; in addition, neutral markers were used to assess genetic variation among different intensities of the adopted selections. The individual genetic component was found to be higher than at the inter-population level. Results showed that a hypothetical seed orchard made with progenies selected by morphology, phenology and genetic traits could provide material with a good performance and supply a variability similar to larger populations as the total plantation or the pseudo-natural system chosen for comparison. st1\\:*{behavior:url(#ieooui } /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Tabella normale"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Times New Roman"; mso-ansi-language:#0400; mso

  4. Flowering Trees

    Indian Academy of Sciences (India)

    Dolichandrone atrovirens (Roth) K. Schum. (Spathe Trumpet Tree) of Bignoniaceae is a medium-sized handsome tree with a straight bole that branches at the top. Leaves are once pinnate, with two to three pairs of leaflets. Young parts of the tree are velvety. Inflorescence is a branched raceme borne at the branch ends.

  5. Genetic diversity and genetic structure of Persian walnut (Juglans regia) accessions from 14 European, African, and Asian countries using SSR markers

    NARCIS (Netherlands)

    Ebrahimi, Aziz; Zarei, Abdolkarim; Lawson, Shaneka; Woeste, Keith E.; Smulders, M.J.M.

    2016-01-01

    Persian walnut (Juglans regia L.) is the world’s most widely grown nut crop, but large-scale assessments and comparisons of the genetic diversity of the crop are notably lacking. To guide the conservation and utilization of Persian walnut genetic resources, genotypes (n = 189) from 25 different

  6. Incidence of Agrobacterium tumefaciens biovar 1 in and on ‘Paradox’ (Juglans hindsii x Juglans regia) walnut seed collected from commercial nurseries

    Science.gov (United States)

    The walnut rootstock Paradox (Juglans hindsii (Jeps) Rehder x J. regia L.) is susceptible to Agrobacterium tumefaciens (7) which often results in a high incidence of crown gall in nursery or walnut production orchards. Though A. tumefaciens is susceptible to the commonly used preplant soil fumigant...

  7. Genetic diversity and genetic structure of Persian walnut (Juglans regia) accessions from 14 European, African, and Asian countries using SSR markers

    Science.gov (United States)

    Aziz Ebrahimi; Abdolkarim Zarei; Shaneka Lawson; Keith E. Woeste; M. J. M. Smulders

    2016-01-01

    Persian walnut (Juglans regia L.) is the world's most widely grown nut crop, but large-scale assessments and comparisons of the genetic diversity of the crop are notably lacking. To guide the conservation and utilization of Persian walnut genetic resources, genotypes (n = 189) from 25 different regions in 14 countries on...

  8. Tree compression with top trees

    DEFF Research Database (Denmark)

    Bille, Philip; Gørtz, Inge Li; Landau, Gad M.

    2013-01-01

    We introduce a new compression scheme for labeled trees based on top trees [3]. Our compression scheme is the first to simultaneously take advantage of internal repeats in the tree (as opposed to the classical DAG compression that only exploits rooted subtree repeats) while also supporting fast...

  9. Tree compression with top trees

    DEFF Research Database (Denmark)

    Bille, Philip; Gørtz, Inge Li; Landau, Gad M.

    2015-01-01

    We introduce a new compression scheme for labeled trees based on top trees. Our compression scheme is the first to simultaneously take advantage of internal repeats in the tree (as opposed to the classical DAG compression that only exploits rooted subtree repeats) while also supporting fast...

  10. Genetic and ecological insights into glacial refugia of walnut (Juglans regia L.)

    Science.gov (United States)

    The distribution and survival of trees during the last glacial maximum (LGM) has been of interest to paleoecologists, biogeographers, and geneticists. Ecological niche models (ENMs) that associate species occurrence and abundance with climatic variables are extensively used to gain ecological to pre...

  11. Flowering Trees

    Indian Academy of Sciences (India)

    Flowering Trees. Acrocarpus fraxinifolius Wight & Arn. (PINK CEDAR, AUSTRALIAN ASH) of. Caesalpiniaceae is a lofty unarmed deciduous native tree that attains a height of 30–60m with buttresses. Bark is thin and light grey. Leaves are compound and bright red when young. Flowers in dense, erect, axillary racemes.

  12. Flowering Trees

    Indian Academy of Sciences (India)

    Brachichiton acerifolius F. Muell., commonly called as the Illawara flame tree is a member of Malvaceae family and is native to sub-tropical parts of Australia. Due to its spectacular flowers and tolerance to wide range of climates, it's now cultivated all over the world for its beauty. The tree produces flowers during the.

  13. Flowering Trees

    Indian Academy of Sciences (India)

    Cassia siamia Lamk. (Siamese tree senna) of Caesalpiniaceae is a small or medium size handsome tree. Leaves are alternate, pinnately compound and glandular, upto 18 cm long with 8–12 pairs of leaflets. Inflorescence is axillary or terminal and branched. Flowering lasts for a long period from March to February.

  14. Flowering Trees

    Indian Academy of Sciences (India)

    Srimath

    Grevillea robusta A. Cunn. ex R. Br. (Sil- ver Oak) of Proteaceae is a daintily lacy ornamental tree while young and growing into a mighty tree (45 m). Young shoots are silvery grey and the leaves are fern- like. Flowers are golden-yellow in one- sided racemes (10 cm). Fruit is a boat- shaped, woody follicle.

  15. Flowering Trees

    Indian Academy of Sciences (India)

    Baccaurea courtallensis Muell.-Arg. of Euphorbiaceae is an evergreen tree that is very attractive when in flower. Leaves are alternate. Male and female flowers are borne on separate trees. Inflorescences bearing several flowers arise in tufts on tubercles on the stem. Fruits are crimson red in colour. Seeds are covered.

  16. Genetic variation of common walnut (Juglans regia in Piedmont, Northwestern Italy

    Directory of Open Access Journals (Sweden)

    Ferrazzini D

    2007-12-01

    Full Text Available The European or common walnut is a large tree prized as a multipurpose species: it provides valuable timber and produces a high-quality edible nut. The diffusion of the species in Italy has been largely influenced by the human activity, mainly through germplasm movement, selection of genotypes most suited for wood or fruit production and adaptation induced on fruit crop reproductive materials. As a consequence, genetic variability has been reduced, so that programs aimed at its preservation appear of the utmost importance. 104 walnut plants growing in Piedmont, northwestern Italy, were investigated through genetic variation scored at RAPD loci, yielded by PCR amplification of 10 decamer primers. Among the 101 studied loci, only 53 were polymorphic, showing a low level of genetic variation within the studied material. Genetic differentiation was estimated both at individual and geographical area level. Only in few cases trees growing in the same area showed to be genetically similar, while the differentiation between areas accounted for about 10% of the total variation, according to AMOVA. No significant correlation was found between genetic and geographic distances. The results of the study showed that also in Piedmont (such as it was already demonstrated in other parts of Italy the distribution of common walnut is a direct consequence of the human activity. The selection of individual trees, to be used as basic materials for seed supply, should therefore be based mainly on phenotypic traits, rather than ecological features of the location: in species characterized by artificial diffusion, the adoption of Region of Provenance has a scarce significance and prominence should be given to the phenotype selection.

  17. NMR, HPLC-ESI-MS, and MALDI-TOF MS analysis of condensed tannins from Delonix regia (Bojer ex Hook.) Raf. and their bioactivities.

    Science.gov (United States)

    Chai, Wei-Ming; Shi, Yan; Feng, Hui-Ling; Qiu, Ling; Zhou, Hai-Chao; Deng, Zi-Wei; Yan, Chong-Ling; Chen, Qing-Xi

    2012-05-16

    The structures of the condensed tannins isolated from leaf, fruit, and stem bark of Delonix regia (Bojer ex Hook.) Raf. have been investigated with (13)C nuclear magnetic resonance ((13)C NMR) and high performance liquid chromatography electrospray ionization mass spectrometry (HPLC-ESI-MS) coupled with thiolysis and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) analyses. The results showed that these condensed tannins from D. regia possessed structural heterogeneity in monomer units and degree of polymerization. Propelargonidin (PP) and procyanidin (PC) were found in the leaf, fruit, and stem bark of D. regia, while prodelphinidin (PD) was found only in the leaves. The polymer chain lengths of condensed tannins from leaf and fruit organs were detected to be trimers to hexadecamers but from trimers to tridecamers for stem bark. B-type linkages were present in all these compounds. Condensed tannins from different parts of D. regia can be explored as tyrosinase inhibitors and food antioxidants because of their potent antityrosinase and antioxidant activities. The inhibitor concentration leading to 50% enzyme activity (IC(50)) was estimated to be 38 ± 1, 73 ± 2, and 54 ± 1.5 μg/mL for the condensed tannins of leaf, fruit, and stem bark. Condensed tannins extracted from stem bark exhibited the highest antioxidant activity; the DPPH scavenging activity (IC(50)) and the FRAP values were 90 ± 2 μg/mL and 5.42 ± 0.09 mmol AAE/g, respectively.

  18. Effects of surface treatment using aqua regia solution on the change of surface band bending of p-type GaN

    Science.gov (United States)

    Kim, Jong Kyu; Kim, Ki-Jeong; Kim, Bongsoo; Kim, Jae Nam; Kwak, Joon Seop; Park, Yong Jo; Lee, Jong-Lam

    2001-03-01

    Effects of surface treatment on the change of band bending at the surface of p-type GaN were studied using synchrotron radiation photoemission spectroscopy, and the results were used to interpret the reduction of contact resistivity by the surface treatment. The contact resistivity on p-type GaN decreased from (5.1±1.2)×10-1 to (9.3±3.5)×10-5Ω cm2 by the surface treatment using aqua regia prior to Pt deposition. Surface band bending was reduced by 0.58 eV and 0.87 eV after the surface treatments by HCl and aqua regia solutions, respectively. The atomic ratio of Ga/N decreased as the photoelectron detection angle was decreased, indicating that the surface oxide was mainly composed of Ga and O, GaOx, formed during high-temperature annealing for the generation of holes, and Ga vacancies, VGa, were produced below the GaOx layer. Consequently, the aqua regia treatment plays a role in removing GaOx formed on p-type GaN, leading to the shift of the Fermi level toward the energy levels of VGa located near the valence band edge. This causes the decrease of barrier height for the transport of holes, resulting in the good ohmic contacts to p-type GaN.

  19. Microwave assisted aqua regia extraction of thallium from sediment and coal fly ash samples and interference free determination by continuum source ETAAS after cloud point extraction.

    Science.gov (United States)

    Meeravali, Noorbasha N; Madhavi, K; Kumar, Sunil Jai

    2013-01-30

    A simple cloud point extraction method is described for the separation and pre-concentration of thallium from the microwave assisted aqua regia extracts of sediment and coal fly ash samples. The method is based on the formation of extractable species of thallium and its interaction with hydrophobic solubilizing sites of Triton X-114 micelles in the presence of aqua regia and electrolyte NaCl. These interactions of micelles are used for extraction of thallium from a bulk aqueous phase into a small micelles-rich phase. The potential chloride interferences are eliminated effectively, which enabled interference free determination of thallium from aqua regia extracts using continuum source ETAAS. The parameters affecting the extraction process are optimized. Under the optimized conditions, pre-concentration factor and limit of detection are 40 and 0.2 ng g(-1), respectively. The recoveries are in the range of 95-102%. A characteristic mass, 13 pg was obtained. The accuracy of the method is verified by analyzing certified reference materials such as NIST 1633b coal fly ash, NIST 1944 marine sediment and GBW 07312 stream sediments. The results obtained are in good agreement with the certified values and method is also applied to real samples. Copyright © 2012 Elsevier B.V. All rights reserved.

  20. Flowering Trees

    Indian Academy of Sciences (India)

    Srimath

    shaped corolla. Fruit is large, ellipsoidal, green with a hard and smooth shell containing numerous flattened seeds, which are embedded in fleshy pulp. Calabash tree is commonly grown in the tropical gardens of the world as a botanical oddity.

  1. Electron Tree

    DEFF Research Database (Denmark)

    Appelt, Ane L; Rønde, Heidi S

    2013-01-01

    The photo shows a close-up of a Lichtenberg figure – popularly called an “electron tree” – produced in a cylinder of polymethyl methacrylate (PMMA). Electron trees are created by irradiating a suitable insulating material, in this case PMMA, with an intense high energy electron beam. Upon discharge......, during dielectric breakdown in the material, the electrons generate branching chains of fractures on leaving the PMMA, producing the tree pattern seen. To be able to create electron trees with a clinical linear accelerator, one needs to access the primary electron beam used for photon treatments. We...... appropriated a linac that was being decommissioned in our department and dismantled the head to circumvent the target and ion chambers. This is one of 24 electron trees produced before we had to stop the fun and allow the rest of the accelerator to be disassembled....

  2. Superação da dormência das sementes de Delonix regia (Bojer ex Hook. Raf.

    Directory of Open Access Journals (Sweden)

    Glauciana da Mata Ataíde

    2013-12-01

    Full Text Available Delonix regia (flamboyant é uma espécie arbórea amplamente utilizada no Brasil, de alto valor ornamental. Sua propagação ocorre por meio de sementes, que apresentam dormência pela impermeabilidade do tegumento à água. Com o objetivo de determinar a melhor metodologia para a superação da dormência, as sementes da espécie foram submetidas a diferentes tratamentos: 1 imersão em água fervente por 1 min; 2 imersão em água a 80 °C e a 90 °C por 1 e 3 min; 3 escarificação manual com lixa; e 4 imersão em ácido sulfúrico concentrado por 15, 30, 45 e 60 min, além da testemunha. Após cada tratamento, as sementes foram colocadas para germinar em rolo de papel, na temperatura de 25 ºC. Em uma segunda etapa, os tratamentos mais efetivos na quebra de dormência das sementes foram aplicados e a germinação, testada à temperatura de 30 °C. Em ambas as temperaturas, as contagens de germinação (plântulas normais foram realizadas diariamente. O tratamento das sementes de flamboyant em água quente a 90 ºC por 1 min foi o mais eficiente na promoção da germinação, sendo prático e dispensando o uso de tratamentos químicos. O teste de germinação realizado à temperatura de 30 °C não forneceu resultados satisfatórios, com menores porcentagens de plântulas normais e IVG que os testes a 25 ºC. Foram descritas como plântulas normais as que possuíam visíveis dois cotilédones semiabertos, hipocótilo alongado, raiz primária bem desenvolvida e raízes adventícias curtas. Conclui-se que sementes de Delonix regia germinam melhor a 25 ºC após a imersão por 1 min em água a 90 ºC, sendo este indicado como tratamento para superação da dormência da espécie.

  3. Genetic and ecological insights into glacial refugia of walnut (Juglans regia L.).

    Science.gov (United States)

    Aradhya, Mallikarjuna; Velasco, Dianne; Ibrahimov, Zakir; Toktoraliev, Biimyrza; Maghradze, David; Musayev, Mirza; Bobokashvili, Zviadi; Preece, John E

    2017-01-01

    The distribution and survival of trees during the last glacial maximum (LGM) has been of interest to paleoecologists, biogeographers, and geneticists. Ecological niche models that associate species occurrence and abundance with climatic variables are widely used to gain ecological and evolutionary insights and to predict species distributions over space and time. The present study deals with the glacial history of walnut to address questions related to past distributions through genetic analysis and ecological modeling of the present, LGM and Last Interglacial (LIG) periods. A maximum entropy method was used to project the current walnut distribution model on to the LGM (21-18 kyr BP) and LIG (130-116 kyr BP) climatic conditions. Model tuning identified the walnut data set filtered at 10 km spatial resolution as the best for modeling the current distribution and to hindcast past (LGM and LIG) distributions of walnut. The current distribution model predicted southern Caucasus, parts of West and Central Asia extending into South Asia encompassing northern Afghanistan, Pakistan, northwestern Himalayan region, and southwestern Tibet, as the favorable climatic niche matching the modern distribution of walnut. The hindcast of distributions suggested the occurrence of walnut during LGM was somewhat limited to southern latitudes from southern Caucasus, Central and South Asian regions extending into southwestern Tibet, northeastern India, Himalayan region of Sikkim and Bhutan, and southeastern China. Both CCSM and MIROC projections overlapped, except that MIROC projected a significant presence of walnut in the Balkan Peninsula during the LGM. In contrast, genetic analysis of the current walnut distribution suggested a much narrower area in northern Pakistan and the surrounding areas of Afghanistan, northwestern India, and southern Tajikistan as a plausible hotspot of diversity where walnut may have survived glaciations. Overall, the findings suggest that walnut perhaps

  4. Genetic and ecological insights into glacial refugia of walnut (Juglans regia L..

    Directory of Open Access Journals (Sweden)

    Mallikarjuna Aradhya

    Full Text Available The distribution and survival of trees during the last glacial maximum (LGM has been of interest to paleoecologists, biogeographers, and geneticists. Ecological niche models that associate species occurrence and abundance with climatic variables are widely used to gain ecological and evolutionary insights and to predict species distributions over space and time. The present study deals with the glacial history of walnut to address questions related to past distributions through genetic analysis and ecological modeling of the present, LGM and Last Interglacial (LIG periods. A maximum entropy method was used to project the current walnut distribution model on to the LGM (21-18 kyr BP and LIG (130-116 kyr BP climatic conditions. Model tuning identified the walnut data set filtered at 10 km spatial resolution as the best for modeling the current distribution and to hindcast past (LGM and LIG distributions of walnut. The current distribution model predicted southern Caucasus, parts of West and Central Asia extending into South Asia encompassing northern Afghanistan, Pakistan, northwestern Himalayan region, and southwestern Tibet, as the favorable climatic niche matching the modern distribution of walnut. The hindcast of distributions suggested the occurrence of walnut during LGM was somewhat limited to southern latitudes from southern Caucasus, Central and South Asian regions extending into southwestern Tibet, northeastern India, Himalayan region of Sikkim and Bhutan, and southeastern China. Both CCSM and MIROC projections overlapped, except that MIROC projected a significant presence of walnut in the Balkan Peninsula during the LGM. In contrast, genetic analysis of the current walnut distribution suggested a much narrower area in northern Pakistan and the surrounding areas of Afghanistan, northwestern India, and southern Tajikistan as a plausible hotspot of diversity where walnut may have survived glaciations. Overall, the findings suggest that

  5. Flowering Trees

    Indian Academy of Sciences (India)

    branched evergreen shrub or small tree (6–7 m) with soft whitish-yellow wood. Branches are numerous and drooping. The leaves are elliptic-lanceolate and somewhat fleshy. Flowers are in loose axillary and terminal much-branched inflorescence, ...

  6. Flowering Trees

    Indian Academy of Sciences (India)

    narrow towards base. Flowers are large and attrac- tive, but emit unpleasant foetid smell. They appear in small numbers on erect terminal clusters and open at night. Stamens are numerous, pink or white. Style is slender and long, terminating in a small stigma. Fruit is green, ovoid and indistinctly lobed. Flowering Trees.

  7. ~{owering 'Trees

    Indian Academy of Sciences (India)

    Stamens are fused into a purple staminal tube that is toothed. Fruit is about 0.5 in. across, nearly globose, generally 5-seeded, green but yellow when ripe, quite smooth at first but wrinkled in drying, remaining long on the tree ajier ripening. The species is widely natural but occasionally cultivated for firewood as it grows very ...

  8. Flowering Trees

    Indian Academy of Sciences (India)

    Srimath

    quick-growing deciduous tree with a small crown. Branches are covered with dark conical prickles, which fall off after some time. The leaves are compound with three leaflets. Bright red or scarlet flowers which appear following leaf fall are in clusters at branch ends. Birds and bees visit flowers for nectar. Fruit is a cylindrical ...

  9. Flowering Trees

    Indian Academy of Sciences (India)

    deciduous tree with irregularly-shaped trunk, greyish-white scaly bark and milky latex. Leaves in opposite pairs are simple, oblong and whitish beneath. Flowers that occur in branched inflorescence are white, 2–. 3cm across and fragrant. Calyx is glandular inside. Petals bear numerous linear white scales, the corollary.

  10. Flowering Trees

    Indian Academy of Sciences (India)

    Muntingia calabura L. (Singapore cherry) of. Elaeocarpaceae is a medium size handsome ever- green tree. Leaves are simple and alternate with sticky hairs. Flowers are bisexual, bear numerous stamens, white in colour and arise in the leaf axils. Fruit is a berry, edible with several small seeds embedded in a fleshy pulp ...

  11. Flowering Trees

    Indian Academy of Sciences (India)

    Srimath

    . (6-10m high) evergreen tree with a straight trunk and broad open crown. Leaves are clustered at the end of twigs. They are dark green, broadest near the rounded apex and tapering towards the base with a short stalk. Flowers are greenish or ...

  12. ~{owering 'Trees

    Indian Academy of Sciences (India)

    size (upto 40 ft. high) deciduous tree with thick trunk, large crown of spreading branches and furrowed greenish-brown bark. (picture shows a young specimen). Leaves are 10-20 in. long, twice compound bearing numerous dark- green ...

  13. Flowering Trees

    Indian Academy of Sciences (India)

    Guaiacum officinale L. (LIGNUM-VITAE) of Zygophyllaceae is a dense-crowned, squat, knobbly, rough and twisted medium-sized ev- ergreen tree with mottled bark. The wood is very hard and resinous. Leaves are compound. The leaflets are smooth, leathery, ovate-ellipti- cal and appear in two pairs. Flowers (about 1.5.

  14. Flowering Trees

    Indian Academy of Sciences (India)

    IAS Admin

    Caesalpinia coriaria (Jacq.) Willd. (THE AMERICAN SUMACH, DIVI-DIVI) of. Caesalpiniaceae is a small unarmed tree reaching up to 10 m in height with a spreading crown. Leaves are alternate and twice compound. The flowers are small, about 0.6 cm (enlarged 5 times here), greenish-yellow, fragrant and appear in dense ...

  15. Flowering Trees

    Indian Academy of Sciences (India)

    Canthium parviflorum Lam. of Rubiaceae is a large shrub that often grows into a small tree with conspicuous spines. Leaves are simple, in pairs at each node and are shiny. Inflorescence is an axillary few-flowered cymose fascicle. Flowers are small (less than 1 cm across), 4-merous and greenish-white. Fruit is ellipsoid ...

  16. Flowering Trees

    Indian Academy of Sciences (India)

    Diospyros peregrina (Gaertn.) Guercke Syn. Diospyros embryopteris Pers., Diospyros malabarica Desr. (PALE MOON EBONY, RIBER EBONY) of Ebenaceae is a small or mid-sized slow-growing evergreen tree with spreading branches that form a dense crown. The bark is smooth, thick, dark and flakes off in large shreds.

  17. Flowering Trees

    Indian Academy of Sciences (India)

    Andira inermis (wright) DC. , Dog Almond of Fabaceae is a handsome lofty evergreen tree. Leaves are alternate and pinnately compound with 4–7 pairs of leaflets. Flowers are fragrant and are borne on compact branched inflorescences. Fruit is ellipsoidal one-seeded drupe that is peculiar to members of this family.

  18. :Ffowering 'Trees-

    Indian Academy of Sciences (India)

    The tree is a host of lac insects which secrete a resinous substance that yields shellac or lac. A ruby-coloured gum known as Bengal Kino is collected from the incisions made in the bark. The wood, resistant to water, is used in water-well work. The seeds are used as anthelmintic and as an antidote for snake-bite.

  19. Flowering Trees

    Indian Academy of Sciences (India)

    Trincomali Wood of Tiliaceae is a tall evergreen tree with straight trunk, smooth brownish-grey bark and simple broad leaves. Inflorescence is much branched with white flowers. Stamens are many with golden yellow anthers. Fruit is a capsule with six spreading wings. Seeds bear short stiff hairs that cause skin irritation.

  20. Tree Mortality

    Science.gov (United States)

    Mark J. Ambrose

    2012-01-01

    Tree mortality is a natural process in all forest ecosystems. However, extremely high mortality also can be an indicator of forest health issues. On a regional scale, high mortality levels may indicate widespread insect or disease problems. High mortality may also occur if a large proportion of the forest in a particular region is made up of older, senescent stands....

  1. Flowering Trees

    Indian Academy of Sciences (India)

    Sterculia foetida L. (INDIAN ALMOND,. JAVA OLIVE) of Sterculiaceae is a tall deciduous tree reaching a height of 20 m with faintly ridged grey bark. The bole reaches up to 2m in girth. Branches are reddish, usually horizontal. Leaves are large, palmately compound (5–7 leaflets) and clustered at the branch ends. Flowers ...

  2. Proximate composition, minerals and fatty acid composition of Juglans Regia L. genotypes and cultivars grown in Turkey

    Directory of Open Access Journals (Sweden)

    Cemile Yerlikaya

    2012-10-01

    Full Text Available The proximate composition of eleven walnut (Juglans regia L. genotypes (28 ŞK 010, 28 ŞK 055, 28 ŞK 041, 28 ŞK 601, 28 ŞK 925, 28 ŞK 028, 28 ŞK 118, 28 ŞK 350, 28 ŞK 930, 28 ŞK 850, 28 ŞK 036 and three walnut cultivars (Şebin, Bilecik, Kaman 1 produced in Turkey were determined. The oil content of the samples ranged from 61.32 to 69.35%, corresponding to an energy value of approximately 710 kcal per 100 g of kernel. The protein content ranged from 10.58 to 18.19%, and the carbohydrate composition was between 9.05 and 18.92%. The ash content ranged from 1.53 to 1.99%, and the moisture content of the kernels was between 1.91 and 4.48% the oleic acid content of the oils ranged from 17.90 to 33.35% of the total fatty acids. The linoleic acid content ranged from 43.15 to 60.20%. The linolenic acid content ranged from 9.98 to 13.00%. The palmitic acid content was between 5.21 and 8.40%. Stearic acid ranged from 2.36 to 4.25%. Potassium was the major mineral in all the samples, ranging from 359.73 to 482.97 mg/100 g. Calcium was the next most abundant mineral, ranging from 109.45 to 335.97 mg/100 g, followed by magnesium, ranging from 126.01 to 165.15 mg/100 g.

  3. Estimation of structural attributes of walnut trees based on terrestrial laser scanning

    Directory of Open Access Journals (Sweden)

    J. Estornell

    2017-06-01

    Full Text Available Juglans regia L. (walnut is a tree of significant economic importance, usually cultivated for its seed used in the food market, and for its wood used in the furniture industry. The aim of this work was to develop regression models to predict crown parameters for walnut trees using a terrestrial laser scanner. A set of 30 trees was selected and the total height, crown height and crown diameter were measured in the field. The trees were also measured by a laser scanner and algorithms were applied to compute the crown volume, crown diameter, total and crown height. Linear regression models were calculated to estimate walnut tree parameters from TLS data. Good results were obtained with values of R2 between 0.90 and 0.98. In addition, to analyze whether coarser point cloud densities might affect the results, the point clouds for all trees were subsampled using different point densities: points every 0.005 m, 0.01 m, 0.05 m, 0.1 m, 0.25 m, 0.5 m, 1 m, and 2 m. New regression models were calculated to estimate field parameters. For total height and crown volume good estimations were obtained from TLS parameters derived for all subsampled point cloud (0.005 m – 2 m.

  4. Effect of surface modification and hybridization on dynamic ...

    Indian Academy of Sciences (India)

    The paper evaluates effect of fibre surface modification and hybridization on dynamic mechanical properties of Roystonea regia/epoxy composites. Surface modification involved alkali and silane treatments. Alkali treatment proved to be more effective on dynamic mechanical properties as compared to silane treatment.

  5. Effect of surface modification and hybridization on dynamic ...

    Indian Academy of Sciences (India)

    Storage and loss modulus values increased after treatments with simultaneous decrease in tan values. Roystonea regia and glass fibres were used together with varying proportions as reinforcement in epoxy matrix to study the hybridization effect on dynamic mechanical properties. Storage and loss modulus values ...

  6. Subject Index 1207..1226

    Indian Academy of Sciences (India)

    Rice husk ash. Effect of T6 heat treatment on damping characteristics of. Al/RHA composites. 989. Rice husk bark ash. Artificial neural networks for prediction of percentage of water absorption of geopolymers produced by waste ashes. 1019. Roystonea regia. Effect of surface modification and hybridization on dynamic.

  7. Effect of fibre content and alkali treatment on mechanical properties ...

    Indian Academy of Sciences (India)

    Administrator

    To overcome this problem, specific physical and chemical treatments were suggested for surface modification of fibres by investigators. ... Keywords. Roystonea regia fibre; epoxy resin; alkali treatment; mechanical properties. 1. Introduction .... From the foliage sheath, the leaves and leaf stem were removed and the sheath ...

  8. 2. Home 3. Journals 4. Bulletin of Materials Science 5. Volume 34 6 ...

    Indian Academy of Sciences (India)

    Administrator

    studies on Schiff bases of 4-amino-4H-1,2,4-triazole-3,5- dimethanol (ATD) in ... Alkali treatment. Effect of fibre content and alkali treatment on mechanical properties of Roystonea regia-reinforced epoxy partially biodegradable composites. 1575 .... Influence of curing conditions on durability of alkali-resistant glass fibres in ...

  9. Physical Characters of Trees And Their Effects on Micro-Climate (Case Study at Urban Forest and Green Open Space at Semarang City

    Directory of Open Access Journals (Sweden)

    Endes N Dahlan

    2016-08-01

    Full Text Available Air temperature in cities are increasing which can cause reduce the human comfort and productivity. Urban forest can make the environment comfortable. The objectiveof the researc hwere: (1. To Determine the effects of urban forest on air temperature and relative humidity, (2. To analyze the effects of physical characters of trees ont he micro-climate amelioration and(3. To Determine species of trees which are very effective for micro-climate amelioration.The results of the research revealed that the average of daily air temperature in the urban forest was 30.2 C with arelative humidityof 74.0%, while the daily air temperature around the urban forest was 31.8 Karakter Fisik Pohon ... (Dahlan E o C with relative humidityof 71.1%. Tree composisitin of all study sites consist of192trees, 29 speciesand 13families. The TinjomoyoForest Tourism has the highest density of trees(406trees/ha, while the lowest in the Parks Minister Supeno (316trees/ha. Value of Key Performance Indicator (KPI of trees based on calculation of tall of trees, diameter of canopies, total leaves area and canopy forms noticed that very effective trees for micro-climate amelioration were: Angsana(Pterocarpus indicus, beringin(Ficus benjamina, flamboyan(Delonix regia , ketapang(Terminalia catappa, mahoni (Swietenia mahogany, andtrembesi (Albizia saman.

  10. Surface tree languages and parallel derivation trees

    NARCIS (Netherlands)

    Engelfriet, Joost

    1976-01-01

    The surface tree languages obtained by top-down finite state transformation of monadic trees are exactly the frontier-preserving homomorphic images of sets of derivation trees of ETOL systems. The corresponding class of tree transformation languages is therefore equal to the class of ETOL languages.

  11. Trees are good, but…

    Science.gov (United States)

    E.G. McPherson; F. Ferrini

    2010-01-01

    We know that “trees are good,” and most people believe this to be true. But if this is so, why are so many trees neglected, and so many tree wells empty? An individual’s attitude toward trees may result from their firsthand encounters with specific trees. Understanding how attitudes about trees are shaped, particularly aversion to trees, is critical to the business of...

  12. Partial results regarding the selection of some nut tree hybrids in order to obtain generative mother plants

    Directory of Open Access Journals (Sweden)

    Eliane Teodora STANCIOIU

    2008-05-01

    Full Text Available In Romania, the establishment of nut tree plantations is continuously expanding, yet the seeding material production has never raised up to the level of cultivators requirements.In our country, although the mother plants are confirmed as Targu Jiu 1, Secular and recently Portval, because of lack of seed tree materials, at present, most of the varieties are being grafted on saplings proceeded from a mixture of genotypes belonging to the species of Juglans regia.By studying the rich stock of germoplasma, present in the district of Gorj, 20 hybrids, that have appropriate features to their formation as mother plants have been collected, so that they might improve the existing variety.

  13. Simple street tree sampling

    Science.gov (United States)

    David J. Nowak; Jeffrey T. Walton; James Baldwin; Jerry. Bond

    2015-01-01

    Information on street trees is critical for management of this important resource. Sampling of street tree populations provides an efficient means to obtain street tree population information. Long-term repeat measures of street tree samples supply additional information on street tree changes and can be used to report damages from catastrophic events. Analyses of...

  14. Programming macro tree transducers

    DEFF Research Database (Denmark)

    Bahr, Patrick; Day, Laurence E.

    2013-01-01

    A tree transducer is a set of mutually recursive functions transforming an input tree into an output tree. Macro tree transducers extend this recursion scheme by allowing each function to be defined in terms of an arbitrary number of accumulation parameters. In this paper, we show how macro tree ...

  15. Modular tree automata

    DEFF Research Database (Denmark)

    Bahr, Patrick

    2012-01-01

    Tree automata are traditionally used to study properties of tree languages and tree transformations. In this paper, we consider tree automata as the basis for modular and extensible recursion schemes. We show, using well-known techniques, how to derive from standard tree automata highly modular r...

  16. Juglans regia L.

    African Journals Online (AJOL)

    use

    2011-11-23

    AMS/12). The harvest date of selected types was at beginning of October. Short growing seasons is important walnut breeding criteria. There are not short growing season types among selected types according to 'Sebin'.

  17. City of Pittsburgh Trees

    Data.gov (United States)

    Allegheny County / City of Pittsburgh / Western PA Regional Data Center — Trees cared for and managed by the City of Pittsburgh Department of Public Works Forestry Division. Tree Benefits are calculated using the National Tree Benefit...

  18. Estimating species trees from unrooted gene trees.

    Science.gov (United States)

    Liu, Liang; Yu, Lili

    2011-10-01

    In this study, we develop a distance method for inferring unrooted species trees from a collection of unrooted gene trees. The species tree is estimated by the neighbor joining (NJ) tree built from a distance matrix in which the distance between two species is defined as the average number of internodes between two species across gene trees, that is, average gene-tree internode distance. The distance method is named NJ(st) to distinguish it from the original NJ method. Under the coalescent model, we show that if gene trees are known or estimated correctly, the NJ(st) method is statistically consistent in estimating unrooted species trees. The simulation results suggest that NJ(st) and STAR (another coalescence-based method for inferring species trees) perform almost equally well in estimating topologies of species trees, whereas the Bayesian coalescence-based method, BEST, outperforms both NJ(st) and STAR. Unlike BEST and STAR, the NJ(st) method can take unrooted gene trees to infer species trees without using an outgroup. In addition, the NJ(st) method can handle missing data and is thus useful in phylogenomic studies in which data sets often contain missing loci for some individuals.

  19. Urban tree growth modeling

    Science.gov (United States)

    E. Gregory McPherson; Paula J. Peper

    2012-01-01

    This paper describes three long-term tree growth studies conducted to evaluate tree performance because repeated measurements of the same trees produce critical data for growth model calibration and validation. Several empirical and process-based approaches to modeling tree growth are reviewed. Modeling is more advanced in the fields of forestry and...

  20. Keeping trees as assets

    Science.gov (United States)

    Kevin T. Smith

    2009-01-01

    Landscape trees have real value and contribute to making livable communities. Making the most of that value requires providing trees with the proper care and attention. As potentially large and long-lived organisms, trees benefit from commitment to regular care that respects the natural tree system. This system captures, transforms, and uses energy to survive, grow,...

  1. Lead and cadmium in leaves of deciduous trees in Beijing, China: Development of a metal accumulation index (MAI)

    Energy Technology Data Exchange (ETDEWEB)

    Liu Yanju [Beijing Center for Physical and Chemical Analysis, Beijing 100089 (China) and Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China)]. E-mail: liuyanju@hotmail.com; Zhu Yongguan [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China); Ding Hui [Beijing Center for Physical and Chemical Analysis, Beijing 100089 (China)

    2007-01-15

    Lead and cadmium uptake was investigated for common deciduous street trees in Beijing in this study. Species having Cd accumulation included Populus tomentosa, Sophora japonica and Catalpa speciosa. P. tomentosa had the highest ratios between leaf and soil Cd (0.848), followed by S. japonica (0.536), C. speciosa (0.493), Paulownia tomentosa (0.453) and Juglans regia (0.415). Pb levels were high in leaves of C. speciosa, J. regia and Pa. tomentosa. S. japonica had the highest ratio between leaf Pb and soil Pb (0.146), followed by Pa. tomentosa (0.143), Ginko biloba (0.103) and C. speciosa (0.095). A predictive foliar metal accumulation index (MAI) was developed and C. speciosa was calculated to have the highest MAI value (53.8). This suggests that C. speciosa would be a good choice for planting in areas of Beijing where soil contamination with Cd and Pb may be a problem. - Catalpa speciosa had the highest MAI value.

  2. Classification and regression trees

    CERN Document Server

    Breiman, Leo; Olshen, Richard A; Stone, Charles J

    1984-01-01

    The methodology used to construct tree structured rules is the focus of this monograph. Unlike many other statistical procedures, which moved from pencil and paper to calculators, this text's use of trees was unthinkable before computers. Both the practical and theoretical sides have been developed in the authors' study of tree methods. Classification and Regression Trees reflects these two sides, covering the use of trees as a data analysis method, and in a more mathematical framework, proving some of their fundamental properties.

  3. Fault tree handbook

    International Nuclear Information System (INIS)

    Haasl, D.F.; Roberts, N.H.; Vesely, W.E.; Goldberg, F.F.

    1981-01-01

    This handbook describes a methodology for reliability analysis of complex systems such as those which comprise the engineered safety features of nuclear power generating stations. After an initial overview of the available system analysis approaches, the handbook focuses on a description of the deductive method known as fault tree analysis. The following aspects of fault tree analysis are covered: basic concepts for fault tree analysis; basic elements of a fault tree; fault tree construction; probability, statistics, and Boolean algebra for the fault tree analyst; qualitative and quantitative fault tree evaluation techniques; and computer codes for fault tree evaluation. Also discussed are several example problems illustrating the basic concepts of fault tree construction and evaluation

  4. Covering tree with stars

    DEFF Research Database (Denmark)

    Baumbach, Jan; Guo, Jian-Ying; Ibragimov, Rashid

    2013-01-01

    We study the tree edit distance problem with edge deletions and edge insertions as edit operations. We reformulate a special case of this problem as Covering Tree with Stars (CTS): given a tree T and a set of stars, can we connect the stars in by adding edges between them such that the resulting...... tree is isomorphic to T? We prove that in the general setting, CST is NP-complete, which implies that the tree edit distance considered here is also NP-hard, even when both input trees having diameters bounded by 10. We also show that, when the number of distinct stars is bounded by a constant k, CTS...

  5. Covering tree with stars

    DEFF Research Database (Denmark)

    Baumbach, Jan; Guo, Jiong; Ibragimov, Rashid

    2015-01-01

    We study the tree edit distance problem with edge deletions and edge insertions as edit operations. We reformulate a special case of this problem as Covering Tree with Stars (CTS): given a tree T and a set of stars, can we connect the stars in by adding edges between them such that the resulting...... tree is isomorphic to T? We prove that in the general setting, CST is NP-complete, which implies that the tree edit distance considered here is also NP-hard, even when both input trees having diameters bounded by 10. We also show that, when the number of distinct stars is bounded by a constant k, CTS...

  6. Fault-Tree Compiler

    Science.gov (United States)

    Butler, Ricky W.; Boerschlein, David P.

    1993-01-01

    Fault-Tree Compiler (FTC) program, is software tool used to calculate probability of top event in fault tree. Gates of five different types allowed in fault tree: AND, OR, EXCLUSIVE OR, INVERT, and M OF N. High-level input language easy to understand and use. In addition, program supports hierarchical fault-tree definition feature, which simplifies tree-description process and reduces execution time. Set of programs created forming basis for reliability-analysis workstation: SURE, ASSIST, PAWS/STEM, and FTC fault-tree tool (LAR-14586). Written in PASCAL, ANSI-compliant C language, and FORTRAN 77. Other versions available upon request.

  7. Evaluation of yield and yield components of lamb’s lettuce (Valerianella locusta grown in thin layer soilless systemsThe effects of physical and hormonal treatments on dormancy breaking and the changes in seed coat ultrastructure of Delonix regia

    Directory of Open Access Journals (Sweden)

    SOLICHATUN

    2016-01-01

    Full Text Available Abstract. Solichatun, Santosa, Dewi K, Pratiwi R. 2016. The effects of physical and hormonal treatments on dormancy breaking and the changes in seed coat ultrastructure of Delonix regia. Nusantara Bioscience 8: 94-102. The seed dormancy is described as the inability of an intact viable seed to complete germination under favorable conditions. Delonix regia (Hook Raf. also known as flamboyant is a member of Fabaceae that has seed dormancy. Every seed has a different structure in their seed coat that responsible for initiating imbibition of water due to dormancy breakdown and germination. The aims of this research were to investigate the effect of physical and hormonal treatment in dormancy break of flamboyant seed and to investigate the structure of seed coat on the dormancy and germination. The treatments were applied to break the dormancy of D. regia seeds were physical treatments and hormonal treatments (ABA, BAP, GA, and IBA. Morphological and anatomical changes during dormancy breakdown were investigated using scanning electron microscope. The imbibition pathway tracked using blocking experiment. The results indicated that physical treatment that seeds dipped in hot water (98oC for 5 minutes was the most effective treatment to dormancy breakdown of flamboyant seeds (95%.The application of GA3 100 ppm result the highest of germination percentage (22% among other hormones. The result of blocking experiment showed that hilum and lens play an important role during imbibition processes; and the type of flamboyant seed water gap was the lens gap type.

  8. Trees and highway safety.

    Science.gov (United States)

    2011-03-01

    To minimize the severity of run-off-road collisions of vehicles with trees, departments of transportation (DOTs) : commonly establish clear zones for trees and other fixed objects. Caltrans clear zone on freeways is 30 feet : minimum (40 feet pref...

  9. Decision-Tree Program

    Science.gov (United States)

    Buntine, Wray

    1994-01-01

    IND computer program introduces Bayesian and Markov/maximum-likelihood (MML) methods and more-sophisticated methods of searching in growing trees. Produces more-accurate class-probability estimates important in applications like diagnosis. Provides range of features and styles with convenience for casual user, fine-tuning for advanced user or for those interested in research. Consists of four basic kinds of routines: data-manipulation, tree-generation, tree-testing, and tree-display. Written in C language.

  10. Winter Birch Trees

    Science.gov (United States)

    Sweeney, Debra; Rounds, Judy

    2011-01-01

    Trees are great inspiration for artists. Many art teachers find themselves inspired and maybe somewhat obsessed with the natural beauty and elegance of the lofty tree, and how it changes through the seasons. One such tree that grows in several regions and always looks magnificent, regardless of the time of year, is the birch. In this article, the…

  11. Total well dominated trees

    DEFF Research Database (Denmark)

    Finbow, Arthur; Frendrup, Allan; Vestergaard, Preben D.

    cardinality then G is a total well dominated graph. In this paper we study composition and decomposition of total well dominated trees. By a reversible process we prove that any total well dominated tree can both be reduced to and constructed from a family of three small trees....

  12. Macro tree transducers

    NARCIS (Netherlands)

    Engelfriet, Joost; Vogler, Heiko

    1985-01-01

    Macro tree transducers are a combination of top-down tree transducers and macro grammars. They serve as a model for syntax-directed semantics in which context information can be handled. In this paper the formal model of macro tree transducers is studied by investigating typical automata theoretical

  13. TreePics: visualizing trees with pictures

    Directory of Open Access Journals (Sweden)

    Nicolas Puillandre

    2017-09-01

    Full Text Available While many programs are available to edit phylogenetic trees, associating pictures with branch tips in an efficient and automatic way is not an available option. Here, we present TreePics, a standalone software that uses a web browser to visualize phylogenetic trees in Newick format and that associates pictures (typically, pictures of the voucher specimens to the tip of each branch. Pictures are visualized as thumbnails and can be enlarged by a mouse rollover. Further, several pictures can be selected and displayed in a separate window for visual comparison. TreePics works either online or in a full standalone version, where it can display trees with several thousands of pictures (depending on the memory available. We argue that TreePics can be particularly useful in a preliminary stage of research, such as to quickly detect conflicts between a DNA-based phylogenetic tree and morphological variation, that may be due to contamination that needs to be removed prior to final analyses, or the presence of species complexes.

  14. Market analysis of food products for detection of allergenic walnut (Juglans regia) and pecan (Carya illinoinensis) by real-time PCR.

    Science.gov (United States)

    López-Calleja, Inés María; de la Cruz, Silvia; González, Isabel; García, Teresa; Martín, Rosario

    2015-06-15

    Two real-time polymerase chain reaction (PCR)-based assays for detection of walnut (Juglans regia) and pecan (Carya illinoinensis) traces in a wide range of processed foods are described here. The method consists on a real-time PCR assay targeting the ITS1 region, using a nuclease (TaqMan) probe labeled with FAM and BBQ. The method was positive for walnut and pecan respectively, and negative for all other heterologous plants and animals tested. Using a series of model samples with defined raw walnut in wheat flour and heat-treated walnut in wheat flour with a range of concentrations of 0.1-100,000 mg kg(-1), a practical detection limit of 0.1 mg kg(-1) of walnut content was estimated. Identical binary mixtures were done for pecan, reaching the same limit of detection of 0.1 mg kg(-1). The assay was successfully trialed on a total of 232 commercial foodstuffs. Copyright © 2015 Elsevier Ltd. All rights reserved.

  15. Comparison of the effects of fresh leaf and peel extracts of walnut (Juglans regia L. on blood glucose and β-cells of streptozotocin-induced diabetic rats

    Directory of Open Access Journals (Sweden)

    Somaye Javidanpour

    2012-12-01

    Full Text Available There is some report about the hypoglycemic effect of Juglans rejia L. leaf in alloxan induced diabetic rats and hypoglycemic effect of its fruit peel administered intra peritoneally. Thirty male Wistar rats divided into five groups, to evaluate the hypoglycemic and pancreas β-cells regenerative effects of oral methanolic extracts of leaf and fruit peel of walnut. Rats were made diabetic by intravenous (IV injection of 50 mg kg-1 streptozotocin (STZ. Negative control group did not get STZ and any treatment. Positive control, leaf extract, peel extract and insulin groups were treated orally by extract solvent, 200 mg kg-1 leaf extract, 200 mg kg-1 peel extract and 5 IU kg-1 of subcutaneous neutral protamine Hagedorn (NPH insulin, respectively. Four weeks later, blood was collected for biochemical analysis and pancreases were removed for β-cells counts in histological sections. Diabetes leads to increase of fast blood sugar (FBS and HbA1c, and decrease of β-cell number and insulin. FBS decreased only in leaf extract group. HbA1c decreased in leaf extract and insulin groups. The β-cells number increased in leaf and peel extract groups. Insulin increased moderately in all treatment groups. We showed the proliferative properties of leaves and peel of Juglans regia L. methanolic extract in STZ- induced diabetic rats, which was accompanied by hypoglycemic effect of leaf extract.

  16. Atividade de enzimas relacionadas com a mobilização de carboidratos durante a dormência da nogueira (Juglans Regia Walnut enzyme activity related with carbohydrate mobilization during dormancy period

    Directory of Open Access Journals (Sweden)

    Idemir Citadin

    2009-06-01

    Full Text Available A brotação da nogueira é dependente da mobilização de carboidratos do lenho para as gemas localizadas na porção superior dos ramos. O objetivo do trabalho foi contribuir para o entendimento do mecanismo de brotação acrótona da nogueira, em clima temperado, através da mensuração da atividade da ±-amilase (EC 3.2.1.1 e sacarose fosfato sintase (SPS - EC 2.4.1.14 relacionadas com a mobilização de carboidratos, durante o período de dormência. Para cada coleta, foram amostrados cinco ramos do ano, durante os meses de setembro a março. Em abril, próximo à retomada do crescimento ativo, foram feitas três amostragens. As partes apical, subapical e da base dos ramos foram separadas em casca, lenho (xilema e gemas. O tempo médio de brotação (TMB em condições controladas (25ºC, a umidade ponderal e a atividade das enzimas acima relacionadas foram determinadas. Os resultados obtidos reforçam a teoria de que o gradiente de brotação na nogueira se desenvolve durante a ecodormência e apresenta uma relação de dependência com a atividade da á-amilase; não está evidente a relação da atividade da SPS com a evolução do crescimento das gemas, durante a ecodormência.Juglans regia L. sprout depends on the carbohydrate mobilization from the parenchyma cells into the buds located in the upper portion of the twigs. The objective of this work was to contribute to the walnut tree sprout acrotony mechanism, in temperate climate, through the activity of alpha-amylase (EC 3.2.1.1, and Sucrose Phosphate Synthase (SPS - EC 2.4.1.14 mensuration, related to carbohydrate mobilization, during the dormancy period. From September to March, five one-year-old twigs were monthly sampled around. In April, close to budbreak, three samples were accomplished. The twigs were divided in apical, sub-apical, and base, and separated in bark, buds and wood (xylem. The average time of bud break in controlled conditions (25ºC, water content, and activity

  17. Evaluation of genetic variability among “Early Mature” Juglans regia using microsatellite markers and morphological traits

    Directory of Open Access Journals (Sweden)

    Aziz Ebrahimi

    2017-10-01

    Full Text Available Limiting the juvenile phase and reducing tree size are the two main challenges for breeders to improve most fruit crops. Early maturation and dwarf cultivars have been reported for many fruit species. “Early mature” and low vigor walnut genotypes were found among seedlings of Persian walnut. Nine microsatellite markers were used to evaluate genetic diversity among “Early Mature” Persian walnut accessions and provide a comparison with “normal growth” accessions. Six maturation related characteristics were also measured in “Early Mature” samples. Phenotypic traits and diversity indices showed relatively high levels of genetic diversity in “Early Mature” seedlings and indicated high differentiation between individuals. Seedling height, the most diverse phenotypic trait, has an important role in the clustering of “Early Mature” accessions. The “Early Mature” type had higher number of alleles, number of effective allele, and Shannon index compared to the “Normal Growth” group. The two types of studied walnuts had different alleles, with more than half of produced alleles specific to a specific group. “Early Mature” and “Normal Growth” walnuts had 27 and 17 private alleles, respectively. Grouping with different methods separated “Early Mature” and “Normal Growth” samples entirely. The presence of moderate to high genetic diversity in “Early Mature” walnuts and high genetic differentiation with “Normal Growth” walnuts, indicated that “Early Mature” walnuts were more diverse and distinct from “Normal Growth” samples. Moreover, our results showed SSR markers were useful for differentiating between “Early Mature” and “Normal Growth” walnuts. A number of identified loci have potential in breeding programs for identification of “Early Mature” walnuts at the germination phase.

  18. Monitoring moisture storage in trees using time domain reflectometry

    Science.gov (United States)

    Constantz, J.; Murphy, F.

    1990-01-01

    Laboratory and field tests were performed to examine the feasibility of using time domain reflectometry (TDR) to monitor changes in the moisture storage of the woody parts of trees. To serve as wave guides for the TDR signal, pairs of stainless steel rods (13 cm long, 0.32 cm in diameter, and 2.5 cm separation) were driven into parallel pilot holes drilled into the woody parts of trees, and a cable testing oscilloscope was used to determine the apparent dielectric constant. A laboratory calibration test was performed on two sapwood samples, so that the relation between the volumetric water content and the apparent dielectric constant of the sapwood could be determined over a range of water contents. The resulting calibration curve for these sapwood samples was significantly different than the general calibration curve used for soils, showing a smaller change in the apparent dielectric constant for a given change in the volumetric water content than is typical for soils. The calibration curve was used to estimate the average volumetric water content to a depth of 13 cm in living trees. One field experiment was conducted on an English walnut tree (Juglans regia) with a diameter of 40 cm, growing in a flood-irrigated orchard on a Hanford sandy loam near Modesto, California (U.S.A.). Rods were driven into the tree at about 50 cm above the soil surface and monitored hourly for the month of August, 1988. The moisture content determined by TDR showed a gradual decrease from 0.44 to 0.42 cm3 cm-3 over a two week period prior to flood irrigation, followed by a rapid rise to 0.47 cm3 cm-3 over a four day period after irrigation, then again a gradual decline approaching the next irrigation. A second field experiment was made on ten evergreen and deciduous trees with diameters ranging from 30 to 120 cm, growing in the foothills of the Coast Range of central California. Rods were driven into each tree at 50 to 100 cm above the soil surface and monitored on a biweekly to monthly

  19. The valuative tree

    CERN Document Server

    Favre, Charles

    2004-01-01

    This volume is devoted to a beautiful object, called the valuative tree and designed as a powerful tool for the study of singularities in two complex dimensions. Its intricate yet manageable structure can be analyzed by both algebraic and geometric means. Many types of singularities, including those of curves, ideals, and plurisubharmonic functions, can be encoded in terms of positive measures on the valuative tree. The construction of these measures uses a natural tree Laplace operator of independent interest.

  20. A theory of game trees, based on solution trees

    NARCIS (Netherlands)

    W.H.L.M. Pijls (Wim); A. de Bruin (Arie); A. Plaat (Aske)

    1996-01-01

    textabstractIn this paper a complete theory of game tree algorithms is presented, entirely based upon the notion of a solution tree. Two types of solution trees are distinguished: max and min solution trees respectively. We show that most game tree algorithms construct a superposition of a max and a

  1. D2-tree

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Sioutas, Spyros; Pantazos, Kostas

    2015-01-01

    We present a new overlay, called the Deterministic Decentralized tree (D2-tree). The D2-tree compares favorably to other overlays for the following reasons: (a) it provides matching and better complexities, which are deterministic for the supported operations; (b) the management of nodes (peers......-balancing scheme of elements into nodes is deterministic and general enough to be applied to other hierarchical tree-based overlays. This load-balancing mechanism is based on an innovative lazy weight-balancing mechanism, which is interesting in its own right....

  2. Morocco - Fruit Tree Productivity

    Data.gov (United States)

    Millennium Challenge Corporation — Date Tree Irrigation Project: The specific objectives of this evaluation are threefold: - Performance evaluation of project activities, like the mid-term evaluation,...

  3. Heavy metal accumulation in trees growing on contaminated sites in Central Europe

    Energy Technology Data Exchange (ETDEWEB)

    Unterbrunner, R. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria); Puschenreiter, M. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria)]. E-mail: markus.puschenreiter@boku.ac.at; Sommer, P. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria); Wieshammer, G. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria); Tlustos, P. [Czech University of Agriculture Prague, 165 21 Praha 6-Suchdol (Czech Republic); Zupan, M. [University of Ljubljana, Biotechnical Faculty, Agronomy department, Jamnikarjeva 101, 1000 Ljubljana (Slovenia); Wenzel, W.W. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria)

    2007-07-15

    Metal-accumulating woody species have been considered for phytoextraction of metal-contaminated sites. We investigated Zn and Cd accumulation in tissues of adult trees and associated herbaceous species collected from contaminated areas in Central Europe. We found considerable Cd and Zn accumulation in various willow, poplar and birch species with up to 116 mg Cd kg{sup -1} and 4680 mg Zn kg{sup -1} in leaves of Salix caprea. Annual variation of Cd and Zn concentrations in leaves of Salix caprea were small, indicating that data obtained in different years can be compared. Metal concentrations in leaves were not related to total (aqua regia) or labile (1 M NH{sub 4}NO{sub 3} extract) concentrations in soil but the accumulation factors (leaf concentration: soil concentration) for Cd and Zn followed an inverse log type function. Metal partitioning between tissues showed a minimum in the wood, with increasing concentrations of Cd and Zn towards the leaves and fine roots. - Adult field-grown Salix caprea, Populus tremula and other tree species accumulate up to 4680 mg Zn kg{sup -1} and 116 mg Cd kg{sup -1} in their leaves.

  4. Heavy metal accumulation in trees growing on contaminated sites in Central Europe

    International Nuclear Information System (INIS)

    Unterbrunner, R.; Puschenreiter, M.; Sommer, P.; Wieshammer, G.; Tlustos, P.; Zupan, M.; Wenzel, W.W.

    2007-01-01

    Metal-accumulating woody species have been considered for phytoextraction of metal-contaminated sites. We investigated Zn and Cd accumulation in tissues of adult trees and associated herbaceous species collected from contaminated areas in Central Europe. We found considerable Cd and Zn accumulation in various willow, poplar and birch species with up to 116 mg Cd kg -1 and 4680 mg Zn kg -1 in leaves of Salix caprea. Annual variation of Cd and Zn concentrations in leaves of Salix caprea were small, indicating that data obtained in different years can be compared. Metal concentrations in leaves were not related to total (aqua regia) or labile (1 M NH 4 NO 3 extract) concentrations in soil but the accumulation factors (leaf concentration: soil concentration) for Cd and Zn followed an inverse log type function. Metal partitioning between tissues showed a minimum in the wood, with increasing concentrations of Cd and Zn towards the leaves and fine roots. - Adult field-grown Salix caprea, Populus tremula and other tree species accumulate up to 4680 mg Zn kg -1 and 116 mg Cd kg -1 in their leaves

  5. Antioxidant and Antimicrobial Attributes and Phenolics of Different Solvent Extracts from Leaves, Flowers and Bark of Gold Mohar [Delonix regia (Bojer ex Hook. Raf.

    Directory of Open Access Journals (Sweden)

    Qaiser M. Khan

    2011-08-01

    Full Text Available This paper describes the antioxidant and antimicrobial activities and phenolic components of different solvent (absolute methanol, absolute ethanol, absolute acetone, 80% methanol, 80% ethanol, 80% acetone and deionized water extracts of leaves, flowers and bark of Gold Mohar [Delonix regia (Bojer ex Hook. Raf.]. The extract yields from leaves, flowers and bark ranged from 10.19 to 36.24, 12.97 to 48.47 and 4.22 to 8.48 g/100 g dry weight (DW, respectively. Overall, 80% methanol extract produced from the leaves exhibited significantly (P < 0.05 higher antioxidant activity, with high phenolic contents (3.63 g GAE/100 g DW, total flavonoid contents (1.19 g CE/100 g DW, inhibition of peroxidation (85.54%, DPPH scavenging capacity (IC50 value 8.89 μg/mL and reducing power (1.87. Similarly, this 80% methanol leaves extract also showed superior antimicrobial activity. HPLC analysis of the 80% methanol extracts for individual phenolics revealed the presence of gallic, protocatechuic and salicylic acid in leaves; gallic, protocatechuic, salicylic, trans-cinnamic and chlorogenic acid in flowers, and gallic acid in bark as the main (amount > 1.50 mg/100 g DW phenolic acids. Besides, small amounts ( < 1.50 mg/100 g DW of some other phenolic acids such as sorbic, sinapic, p-coumaric, m-coumaric, ferulic, caffeic, 3-hydroxybenzoic, 4-hydroxycinnamic and 4-hydroxybenzoic acids were also detected. The extracts of the tested parts of Gold Mohar, especially, the leaves, might be valuable for functional food and therapeutic applications.

  6. Hydride generation atomic fluorescence spectrometric determination of As, Bi, Sb, Se(IV) and Te(IV) in aqua regia extracts from atmospheric particulate matter using multivariate optimization

    Energy Technology Data Exchange (ETDEWEB)

    Moscoso-Perez, Carmen [Department of Analytical Chemistry, Faculty of Sciences, University of A Coruna, Campus da Zapateira s/n, E-15071 A Coruna (Spain); Moreda-Pineiro, Jorge [Department of Analytical Chemistry, Faculty of Sciences, University of A Coruna, Campus da Zapateira s/n, E-15071 A Coruna (Spain)]. E-mail: jmoreda@udc.es; Lopez-Mahia, Purificacion [Department of Analytical Chemistry, Faculty of Sciences, University of A Coruna, Campus da Zapateira s/n, E-15071 A Coruna (Spain); Muniategui-Lorenzo, Soledad [Department of Analytical Chemistry, Faculty of Sciences, University of A Coruna, Campus da Zapateira s/n, E-15071 A Coruna (Spain); Fernandez-Fernandez, Esther [Department of Analytical Chemistry, Faculty of Sciences, University of A Coruna, Campus da Zapateira s/n, E-15071 A Coruna (Spain); Prada-Rodriguez, Dario [Department of Analytical Chemistry, Faculty of Sciences, University of A Coruna, Campus da Zapateira s/n, E-15071 A Coruna (Spain)

    2004-11-22

    A highly sensitive and simple method, based on hydride generation and atomic fluorescence detection, has been developed for the determination of As, Bi, Sb, Se(IV) and Te(IV) in aqua regia extracts from atmospheric particulate matter samples. Atmospheric particulates matter was collected on glass fiber filters using a medium volume sampler (PM1 particulate matter). Two-level factorial designs have been used to optimise the hydride generation atomic fluorescence spectrometry (HG-AFS) procedure. The effects of several parameters affecting the hydride generation efficiency (hydrochloric acid, sodium tetrahydroborate and potassium iodide concentrations and flow rates) have been evaluated using a Plackett-Burman experimental design. In addition, parameters affecting the hydride measurement (delay, analysis and memory times) have been also investigated. The significant parameters obtained (sodium tetrahydroborate concentration, sodium tetrahydroborate flow rate and analysis time for As; hydrochloric acid concentration and sodium tetrahydroborate flow rate for Se(IV); and sodium tetrahydroborate concentration and sodium tetrahydroborate flow rate for Te(IV)) have been optimized by using 2{sup n} + star central composite design. Hydrochloric acid concentration and sodium tetrahydroborate flow rate were the significant parameters obtained for Sb and Bi determination, respectively. Using a univariate approach these parameters were optimized. The accuracy of methods have been verified by using several certified reference materials: SRM 1648 (urban particulate matter) and SRM 1649a (urban dust). Detection limits in the range of 6 x 10{sup -3} to 0.2 ng m{sup -3} have been achieved. The developed methods were applied to several atmospheric particulate matter samples corresponding to A Coruna city (NW Spain)

  7. The effect of the humic substances, garlic (Allium sativum L., wormwood (Artemisia absinthium and walnut (Juglans regia on carcass parameters of broiler chickens

    Directory of Open Access Journals (Sweden)

    Veronika Pistová

    2017-05-01

    Full Text Available In this study the effect of humic substances, garlic (Allium sativum L., wormwood (Artemisia absinthium and walnut (Juglans regia on carcass parameters of broiler chickens were studied. Broiler chickens Ross 308 (n=60 were divided into 3 groups (n=20. The chickens of the control group were fed with complete feed mixtures without any additives. Chickens in the first experimental group E1were fed a diet containing 1.5% of humic substances, 0.4% of garlic powder and 0.1% of wormwood. Chickens in the second experimental group E2 were fed a diet containing 1.5% of humic substances, 0.4% of garlic powder and 0.1% of walnut.  The carcass weight, weight of heart, liver, gizzard, carcass yield and EPEF were evaluated. The carcass weight was in both experimental groups higher, but no statistically significant (P>0.05 in compare with the control group (values in the order of the groups: 1246.93±172.61; 1352.16±139.89 and 1308.30±166.17 g±SD. In the first experimental group E1 were weight of heart (12.15±2.29 g±SD and weight of gizzard (41.58±7.44 g±SD significantly higher (P≤0.05 compared to the control group (9.99 ±1.82; 33.62±5.03 g±SD.

  8. Hydride generation atomic fluorescence spectrometric determination of As, Bi, Sb, Se(IV) and Te(IV) in aqua regia extracts from atmospheric particulate matter using multivariate optimization

    International Nuclear Information System (INIS)

    Moscoso-Perez, Carmen; Moreda-Pineiro, Jorge; Lopez-Mahia, Purificacion; Muniategui-Lorenzo, Soledad; Fernandez-Fernandez, Esther; Prada-Rodriguez, Dario

    2004-01-01

    A highly sensitive and simple method, based on hydride generation and atomic fluorescence detection, has been developed for the determination of As, Bi, Sb, Se(IV) and Te(IV) in aqua regia extracts from atmospheric particulate matter samples. Atmospheric particulates matter was collected on glass fiber filters using a medium volume sampler (PM1 particulate matter). Two-level factorial designs have been used to optimise the hydride generation atomic fluorescence spectrometry (HG-AFS) procedure. The effects of several parameters affecting the hydride generation efficiency (hydrochloric acid, sodium tetrahydroborate and potassium iodide concentrations and flow rates) have been evaluated using a Plackett-Burman experimental design. In addition, parameters affecting the hydride measurement (delay, analysis and memory times) have been also investigated. The significant parameters obtained (sodium tetrahydroborate concentration, sodium tetrahydroborate flow rate and analysis time for As; hydrochloric acid concentration and sodium tetrahydroborate flow rate for Se(IV); and sodium tetrahydroborate concentration and sodium tetrahydroborate flow rate for Te(IV)) have been optimized by using 2 n + star central composite design. Hydrochloric acid concentration and sodium tetrahydroborate flow rate were the significant parameters obtained for Sb and Bi determination, respectively. Using a univariate approach these parameters were optimized. The accuracy of methods have been verified by using several certified reference materials: SRM 1648 (urban particulate matter) and SRM 1649a (urban dust). Detection limits in the range of 6 x 10 -3 to 0.2 ng m -3 have been achieved. The developed methods were applied to several atmospheric particulate matter samples corresponding to A Coruna city (NW Spain)

  9. Deep RNA-Seq profile reveals biodiversity, plant-microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues.

    Science.gov (United States)

    Chakraborty, Sandeep; Britton, Monica; Martínez-García, P J; Dandekar, Abhaya M

    2016-03-01

    Deep RNA-Seq profiling, a revolutionary method used for quantifying transcriptional levels, often includes non-specific transcripts from other co-existing organisms in spite of stringent protocols. Using the recently published walnut genome sequence as a filter, we present a broad analysis of the RNA-Seq derived transcriptome profiles obtained from twenty different tissues to extract the biodiversity and possible plant-microbe interactions in the walnut ecosystem in California. Since the residual nature of the transcripts being analyzed does not provide sufficient information to identify the exact strain, inferences made are constrained to the genus level. The presence of the pathogenic oomycete Phytophthora was detected in the root through the presence of a glyceraldehyde-3-phosphate dehydrogenase. Cryptococcus, the causal agent of cryptococcosis, was found in the catkins and vegetative buds, corroborating previous work indicating that the plant surface supported the sexual cycle of this human pathogen. The RNA-Seq profile revealed several species of the endophytic nitrogen fixing Actinobacteria. Another bacterial species implicated in aerobic biodegradation of methyl tert-butyl ether (Methylibium petroleiphilum) is also found in the root. RNA encoding proteins from the pea aphid were found in the leaves and vegetative buds, while a serine protease from mosquito with significant homology to a female reproductive tract protease from Drosophila mojavensis in the vegetative bud suggests egg-laying activities. The comprehensive analysis of RNA-seq data present also unraveled detailed, tissue-specific information of ~400 transcripts encoded by the largest family of resistance (R) genes (NBS-LRR), which possibly rationalizes the resistance of the specific walnut plant to the pathogens detected. Thus, we elucidate the biodiversity and possible plant-microbe interactions in several walnut (Juglans regia) tissues in California using deep RNA-Seq profiling.

  10. Influence of an extract of Juglans regia on the growth of Escherichia coli, on the electrophoretic profile of plasmid DNA and on the radiolabeling of blood constituents

    Energy Technology Data Exchange (ETDEWEB)

    Santos-Filho, Sebastiao David; Diniz, Claudia Leite; Carmo, Fernanda Santos do; Fonseca, Adenilson de Souza da; Bernardo-Filho, Mario [Universidade do Estado do Rio de Janeiro (UERJ), RJ (Brazil). Instituto de Biologia Roberto Alcantara Gomes. Dept. de Biofisica e Biometria]. E-mail: santos-filho@uer.br

    2008-12-15

    The aim of this work was to study the influence of a walnut (Juglans regia) extract on the growth of Escherichia coli (E. coli) AB1157, on the plasmid DNA topology and on the labeling of blood constituents with technetium-99m ({sup 99m}Tc). An E. coli AB1157 culture, in stationary phase, was incubated with walnut and the growth of the culture was evaluated by optical density at 600 nm for 7 hours. Plasmid DNA samples were incubated with SnCl{sub 2} in presence or absence of walnut for 40 minutes, 0.8% agarose gel electrophoresis was performed, the gel was stained and the plasmid topological forms were visualized. Blood samples from Wistar rats were incubated with walnut extract and an assay of labeling of blood constituents with technetium-99m ({sup 99m}Tc) was performed. Blood cells and plasma were separated. The radioactivity in each fraction was counted and percentage of incorporated radioactivity (%ATI) was determined. The results presented an inhibitory action of the growth of the E. coli AB1157 culture, no protective action of the walnut extract in plasmid DNA treated with SnCl{sub 2}. Moreover, walnut was also not capable to induce modifications in the DNA mobility in agarose gel but walnut was capable to decrease the distribution of {sup 99}'mTc on the blood cell compartment. In conclusion, our experimental data suggest that in the walnut extract has substances with an effect on the growth of E. coli culture, a potential action to increase the SnCl{sub 2} effect on plasmid DNA and also is capable to alter the distribution of {sup 99m}Tc on the blood cell compartment probably due to redoxi properties. (author)

  11. Are trees long-lived?

    Science.gov (United States)

    Kevin T. Smith

    2009-01-01

    Trees and tree care can capture the best of people's motivations and intentions. Trees are living memorials that help communities heal at sites of national tragedy, such as Oklahoma City and the World Trade Center. We mark the places of important historical events by the trees that grew nearby even if the original tree, such as the Charter Oak in Connecticut or...

  12. Decision Tree Phytoremediation

    Science.gov (United States)

    1999-12-01

    8 2.4 Irrigation, Agronomic Inputs, and...documents will provide the reader in-depth background on the science and engineering mechanisms of phytoremediation. Using the decision tree and the...ITRC – Phytoremediation Decision Tree December 1999 8 • Contaminant levels • Plant selection • Treatability • Irrigation, agronomic

  13. Tree biology and dendrochemistry

    Science.gov (United States)

    Kevin T. Smith; Walter C. Shortle

    1996-01-01

    Dendrochemistry, the interpretation of elemental analysis of dated tree rings, can provide a temporal record of environmental change. Using the dendrochemical record requires an understanding of tree biology. In this review, we pose four questions concerning assumptions that underlie recent dendrochemical research: 1) Does the chemical composition of the wood directly...

  14. Structural Equation Model Trees

    Science.gov (United States)

    Brandmaier, Andreas M.; von Oertzen, Timo; McArdle, John J.; Lindenberger, Ulman

    2013-01-01

    In the behavioral and social sciences, structural equation models (SEMs) have become widely accepted as a modeling tool for the relation between latent and observed variables. SEMs can be seen as a unification of several multivariate analysis techniques. SEM Trees combine the strengths of SEMs and the decision tree paradigm by building tree…

  15. Uncovering dynamic fault trees

    NARCIS (Netherlands)

    Junges, Sebastian; Guck, Dennis; Katoen, Joost P.; Stoelinga, Mariëlle Ida Antoinette

    Fault tree analysis is a widespread industry standard for assessing system reliability. Standard (static) fault trees model the failure behaviour of systems in dependence of their component failures. To overcome their limited expressive power, common dependability patterns, such as spare management,

  16. Matching Subsequences in Trees

    DEFF Research Database (Denmark)

    Bille, Philip; Gørtz, Inge Li

    2009-01-01

    Given two rooted, labeled trees P and T the tree path subsequence problem is to determine which paths in P are subsequences of which paths in T. Here a path begins at the root and ends at a leaf. In this paper we propose this problem as a useful query primitive for XML data, and provide new...

  17. Trees Are Terrific!

    Science.gov (United States)

    Braus, Judy, Ed.

    1992-01-01

    Ranger Rick's NatureScope is a creative education series dedicated to inspiring in children an understanding and appreciation of the natural world while developing the skills they will need to make responsible decisions about the environment. Contents are organized into the following sections: (1) "What Makes a Tree a Tree?," including…

  18. Individual tree control

    Science.gov (United States)

    Harvey A. Holt

    1989-01-01

    Controlling individual unwanted trees in forest stands is a readily accepted method for improving the value of future harvests. The practice is especially important in mixed hardwood forests where species differ considerably in value and within species individual trees differ in quality. Individual stem control is a mechanical or chemical weeding operation that...

  19. Trees and Climate Change

    OpenAIRE

    Dettenmaier, Megan; Kuhns, Michael; Unger, Bethany; McAvoy, Darren

    2017-01-01

    This fact sheet describes the complex relationship between forests and climate change based on current research. It explains ways that trees can mitigate some of the risks associated with climate change. It details the impacts that forests are having on the changing climate and discuss specific ways that trees can be used to reduce or counter carbon emissions directly and indirectly.

  20. The tree BVOC index

    Science.gov (United States)

    J.R. Simpson; E.G. McPherson

    2011-01-01

    Urban trees can produce a number of benefits, among them improved air quality. Biogenic volatile organic compounds (BVOCs) emitted by some species are ozone precursors. Modifying future tree planting to favor lower-emitting species can reduce these emissions and aid air management districts in meeting federally mandated emissions reductions for these compounds. Changes...

  1. La transición ontológica del sujeto ritual: una aproximación a la figura regia de Hatshepsut (c. 1473–1458 a. C.

    Directory of Open Access Journals (Sweden)

    Virginia Laporta

    2013-05-01

    Full Text Available En este trabajo analizaremos la transición de Hatshepsut (c. 1473 – 1458 a. C., al convertirse de reina en el rey dual (nsw bjtj egipcio. Para lograrlo, consideraremos la forma de pensamiento de los egipcios centrada en lo sagrado y expresada a partir de mitos y ritos. En particular, nos detendremos en los ritos de pasaje y su vínculo con las relaciones entre el rey y Amón-Ra, los roles intercambiables de Hatshepsut así como la transición post-mortem de su figura regia.

  2. Determination of platinum, palladium, iridium and gold on selected geological reference materials by radiochemical neutron activation analysis: comparison of procedures based on aqua regia leaching and sodium peroxide sintering

    International Nuclear Information System (INIS)

    Nogueira, C.A.; Figueiredo, A.M.G.

    1995-01-01

    A rapid and sensitive neutron activation method for the determination of platinum, palladium, iridium and gold in rocks is described. The procedure consists of thermal neutron irradiation of about 250 mg of sample, followed by chemical treatment of the rock, precipitation of gold and the platinum group elements with tellurium and high-resolution gamma-ray spectrometry with a hyper-pure Ge detector. Two different methods were used for the chemical treatment of the rock: aqua regia leaching and sintering with sodium peroxide. The procedures were evaluated by analysis of the certified reference material SARM-7 and the reference material CHR-Pt+. (author)

  3. Determination of platinum, palladium, iridium and gold on selected geological reference materials by radiochemical neutron activation analysis: comparison of procedures based on aqua regia leaching and sodium peroxide sintering

    Energy Technology Data Exchange (ETDEWEB)

    Nogueira, C.A.; Figueiredo, A.M.G. [Instituto de Pesquisas Energeticas e Nucleares (IPEN), Sao Paulo, SP (Brazil)

    1995-05-01

    A rapid and sensitive neutron activation method for the determination of platinum, palladium, iridium and gold in rocks is described. The procedure consists of thermal neutron irradiation of about 250 mg of sample, followed by chemical treatment of the rock, precipitation of gold and the platinum group elements with tellurium and high-resolution gamma-ray spectrometry with a hyper-pure Ge detector. Two different methods were used for the chemical treatment of the rock: aqua regia leaching and sintering with sodium peroxide. The procedures were evaluated by analysis of the certified reference material SARM-7 and the reference material CHR-Pt+. (author).

  4. Environmental tritium in trees

    International Nuclear Information System (INIS)

    Brown, R.M.

    1979-01-01

    The distribution of environmental tritium in the free water and organically bound hydrogen of trees growing in the vicinity of the Chalk River Nuclear Laboratories (CRNL) has been studied. The regional dispersal of HTO in the atmosphere has been observed by surveying the tritium content of leaf moisture. Measurement of the distribution of organically bound tritium in the wood of tree ring sequences has given information on past concentrations of HTO taken up by trees growing in the CRNL Liquid Waste Disposal Area. For samples at background environmental levels, cellulose separation and analysis was done. The pattern of bomb tritium in precipitation of 1955-68 was observed to be preserved in the organically bound tritium of a tree ring sequence. Reactor tritium was discernible in a tree growing at a distance of 10 km from CRNL. These techniques provide convenient means of monitoring dispersal of HTO from nuclear facilities. (author)

  5. Coded Splitting Tree Protocols

    DEFF Research Database (Denmark)

    Sørensen, Jesper Hemming; Stefanovic, Cedomir; Popovski, Petar

    2013-01-01

    This paper presents a novel approach to multiple access control called coded splitting tree protocol. The approach builds on the known tree splitting protocols, code structure and successive interference cancellation (SIC). Several instances of the tree splitting protocol are initiated, each...... instance is terminated prematurely and subsequently iterated. The combined set of leaves from all the tree instances can then be viewed as a graph code, which is decodable using belief propagation. The main design problem is determining the order of splitting, which enables successful decoding as early...... as possible. Evaluations show that the proposed protocol provides considerable gains over the standard tree splitting protocol applying SIC. The improvement comes at the expense of an increased feedback and receiver complexity....

  6. Tolerance Levels of Roadside Trees to Air Pollutants Based on Relative Growth Rate and Air Pollution Tolerance Index

    Directory of Open Access Journals (Sweden)

    SULISTIJORINI

    2008-09-01

    Full Text Available Motor vehicles release carbon monoxide, nitrogen dioxide, sulphur dioxide, and particulate matters to the air as pollutants. Vegetation can absorb these pollutants through gas exchange processes. The objective of this study was to examine the combination of the relative growth rate (RGR and physiological responses in determining tolerance levels of plant species to air pollutants. Physiological responses were calculated as air pollution tolerance index (APTI. Eight roadside tree species were placed at polluted (Jagorawi highway and unpolluted (Sindangbarang field area. Growth and physiological parameters of the trees were recorded, including plant height, leaf area, total ascorbate, total chlorophyll, leaf-extract pH, and relative water content. Scoring criteria for the combination of RGR and APTI method was given based on means of the two areas based on two-sample t test. Based on the total score of RGR and APTI, Lagerstroemia speciosa was categorized as a tolerant species; and Pterocarpus indicus, Delonix regia, Swietenia macrophylla were categorized as moderately tolerant species. Gmelina arborea, Cinnamomum burmanii, and Mimusops elengi were categorized as intermediate tolerant species. Lagerstroemia speciosa could be potentially used as roadside tree. The combination of RGR and APTI value was better to determinate tolerance level of plant to air pollutant than merely APTI method.

  7. Nutrient and Anti-Nurient Components of Some Tropical Tree Seeds ...

    African Journals Online (AJOL)

    ... significantly from D. regia. Vitellaria paradoxa recorded the highest levels of oxalate and Tannin. From the results obtained in this study, D. regia is a promising source of protein and also contains appreciable contents of mineral. However, mineral fortification could be applied in ruminant nutrition to cater for deficiency.

  8. Language trees not equal gene trees.

    Science.gov (United States)

    Steele, James; Kandler, Anne

    2010-09-01

    Darwin saw similarities between the evolution of species and the evolution of languages, and it is now widely accepted that similarities between related languages can often be interpreted in terms of a bifurcating descent history ('phylogenesis'). Such interpretations are supported when the distributions of shared and unshared traits (for example, in terms of etymological roots for elements of basic vocabulary) are analysed using tree-building techniques and found to be well-explained by a phylogenetic model. In this article, we question the demographic assumption which is sometimes made when a tree-building approach has been taken to a set of cultures or languages, namely that the resulting tree is also representative of a bifurcating population history. Using historical census data relating to Gaelic- and English-speaking inhabitants of Sutherland (Highland Scotland), we have explored the dynamics of language death due to language shift, representing the extreme case of lack of congruence between the genetic and the culture-historical processes. Such cases highlight the important role of selective cultural migration (or shifting between branches) in determining the extinction rates of different languages on such trees.

  9. Skewed Binary Search Trees

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Moruz, Gabriel

    2006-01-01

    It is well-known that to minimize the number of comparisons a binary search tree should be perfectly balanced. Previous work has shown that a dominating factor over the running time for a search is the number of cache faults performed, and that an appropriate memory layout of a binary search tree...... can reduce the number of cache faults by several hundred percent. Motivated by the fact that during a search branching to the left or right at a node does not necessarily have the same cost, e.g. because of branch prediction schemes, we in this paper study the class of skewed binary search trees....... For all nodes in a skewed binary search tree the ratio between the size of the left subtree and the size of the tree is a fixed constant (a ratio of 1/2 gives perfect balanced trees). In this paper we present an experimental study of various memory layouts of static skewed binary search trees, where each...

  10. Phylogenetic trees in bioinformatics

    Energy Technology Data Exchange (ETDEWEB)

    Burr, Tom L [Los Alamos National Laboratory

    2008-01-01

    Genetic data is often used to infer evolutionary relationships among a collection of viruses, bacteria, animal or plant species, or other operational taxonomic units (OTU). A phylogenetic tree depicts such relationships and provides a visual representation of the estimated branching order of the OTUs. Tree estimation is unique for several reasons, including: the types of data used to represent each OTU; the use ofprobabilistic nucleotide substitution models; the inference goals involving both tree topology and branch length, and the huge number of possible trees for a given sample of a very modest number of OTUs, which implies that fmding the best tree(s) to describe the genetic data for each OTU is computationally demanding. Bioinformatics is too large a field to review here. We focus on that aspect of bioinformatics that includes study of similarities in genetic data from multiple OTUs. Although research questions are diverse, a common underlying challenge is to estimate the evolutionary history of the OTUs. Therefore, this paper reviews the role of phylogenetic tree estimation in bioinformatics, available methods and software, and identifies areas for additional research and development.

  11. Structural characterization of the gallery forest of the Guisa Agroforestry Experimental Station

    Directory of Open Access Journals (Sweden)

    José Luis Rodríguez Sosa

    2018-01-01

    Full Text Available The work was carried out in the gallery forest of the Cupaynicú stream, belonging to the Guisa Agroforestry Experimental Station, with the objective of characterizing its structure. Eight parcels of 500 m2 were randomly raised, in them the species were identified, their height and diameter were measured. The flora was analyzed through the origin of the species and the frequency histogram. The structure of the forest was analyzed through the diametric structure and the Value Index of Ecological Importance, the vertical structure was described taking into consideration the forest strata as well as the preparation of the canopy diagram. A descriptive analysis of the parameters diameter, height and basal area was made to study the parametric structure. The richness of the riparian forest was evidenced by the registry of 25 families, 40 genera and 43 species, as well as the predominance of the Meliaceae family followed by Lauraceae, Mimosaceae and Sapindaceae, which reflects the high timber value, melliferous and ecological of the same. The species Roystonea regia, Sterculiaapetala, Dendropanaxarboreus, Andirainermis and Mangifera indica, determine the physiognomy of the gallery Forest. The trees reach 33 cm in diameter and 18.27 m in height on average, although the presence of trees with 30 m is the most frequent, which denotes the irregular structure of the forest.

  12. Clock Tree Power Analysis

    OpenAIRE

    Austbø, Knut

    2016-01-01

    The buffered clock tree structure is commonly used to distribute the clock signal to the memory elements in digital circuits. Since the clock signal is used as a temporal reference, it has to be distributed to the registers with decent timing characteristics and low skew. In order to achieve this, buffers and inverters are inserted in the clock tree, typically by a synthesis tool. The clock tree is a major contributor to the power consumption. This is a result of a combination of high swit...

  13. Generalising tree traversals and tree transformations to DAGs

    DEFF Research Database (Denmark)

    Bahr, Patrick; Axelsson, Emil

    2017-01-01

    We present a recursion scheme based on attribute grammars that can be transparently applied to trees and acyclic graphs. Our recursion scheme allows the programmer to implement a tree traversal or a tree transformation and then apply it to compact graph representations of trees instead...

  14. Big trees, old trees, and growth factor tables

    Science.gov (United States)

    Kevin T. Smith

    2018-01-01

    The potential for a tree to reach a great size and to live a long life frequently captures the public's imagination. Sometimes the desire to know the age of an impressively large tree is simple curiosity. For others, the date-of-tree establishment can make a big diff erence for management, particularly for trees at historic sites or those mentioned in property...

  15. EVALUACIÓN DEL RESIDUO DE CÁSCARA DE NUEZ (Juglans regia L. EN LA PRODUCCIÓN DE PLÁNTULAS DE Pinus patula, EN VIVERO

    Directory of Open Access Journals (Sweden)

    Omar Romero-Arenas

    2012-01-01

    Full Text Available Para producir plantas de calidad en vivero, se utilizan sustratos comerciales como el Peat Moss, agrolita y vermiculita, cuyo costo es elevado y reduce significativamente los márgenes de utilidad; por lo anterior, se necesita buscar sustratos alternativos. La cáscara de nuez (Juglans regia L. es un residuo sin aprovechamiento en producción; sin embargo, cuenta con importantes elementos nutritivos para ser aprovechados por los organismos vegetales. Se evaluó el crecimiento inicial de Pinus patula producido en vivero, con composta de cáscara de nuez con agrolita y vermiculita, mediante sustitución paulatina del Peat Moss. Con un diseño experimental completamente al azar, se estudiaron 4 tratamientos a base de cáscara de nuez + agrolita y vermiculita, en proporciones que variaron desde 0% hasta 80% de cáscara de nuez, y la mezcla de sustratos comerciales. A los 7 meses y medio, las plántulas que se desarrollaron en el tratamiento 1, mezcla testigo (Peat Moss 33% + vermiculita 33% + agrolita 33% y el tratamiento 4 (Cáscara de nuez 33% + vermiculita 33% + agrolita 33% presentaron valores más altos en las variables: altura, diámetro, peso seco aéreo, peso seco radicular y peso seco total. La relación aérea/raíz y el índice de esbeltez no presentaron diferencias entre los 4 tratamientos. El valor más alto del índice de calidad de Dickson fue para el testigo (0,25 g.cm-1, seguido por el tratamiento 4 (0,24 g.cm-1, sin diferencias estadísticas. La cáscara de nuez permite producir plántulas sanas, por lo que es útil como sustrato alternativo para la producción de plantas en vivero, lo que reduce los costos de producción además de contribuir con el sector productivo forestal.

  16. Structural Equation Model Trees

    Science.gov (United States)

    Brandmaier, Andreas M.; von Oertzen, Timo; McArdle, John J.; Lindenberger, Ulman

    2015-01-01

    In the behavioral and social sciences, structural equation models (SEMs) have become widely accepted as a modeling tool for the relation between latent and observed variables. SEMs can be seen as a unification of several multivariate analysis techniques. SEM Trees combine the strengths of SEMs and the decision tree paradigm by building tree structures that separate a data set recursively into subsets with significantly different parameter estimates in a SEM. SEM Trees provide means for finding covariates and covariate interactions that predict differences in structural parameters in observed as well as in latent space and facilitate theory-guided exploration of empirical data. We describe the methodology, discuss theoretical and practical implications, and demonstrate applications to a factor model and a linear growth curve model. PMID:22984789

  17. Tea Tree Oil

    Science.gov (United States)

    ... of Grants and Contracts General Award Mechanisms Small Business Research Grant Program (SBIR) Funding for: Natural Product ... cuts and wounds by the aboriginal people of Australia. Today, tea tree oil is often used externally ...

  18. A parallel buffer tree

    DEFF Research Database (Denmark)

    Sitchinava, Nodar; Zeh, Norbert

    2012-01-01

    We present the parallel buffer tree, a parallel external memory (PEM) data structure for batched search problems. This data structure is a non-trivial extension of Arge's sequential buffer tree to a private-cache multiprocessor environment and reduces the number of I/O operations by the number...... of available processor cores compared to its sequential counterpart, thereby taking full advantage of multicore parallelism. The parallel buffer tree is a search tree data structure that supports the batched parallel processing of a sequence of N insertions, deletions, membership queries, and range queries...... in the optimal OhOf(psortN + K/PB) parallel I/O complexity, where K is the size of the output reported in the process and psortN is the parallel I/O complexity of sorting N elements using P processors....

  19. NLCD 2001 - Tree Canopy

    Data.gov (United States)

    Minnesota Department of Natural Resources — The National Land Cover Database 2001 tree canopy layer for Minnesota (mapping zones 39-42, 50-51) was produced through a cooperative project conducted by the...

  20. Value tree analysis

    International Nuclear Information System (INIS)

    Keeney, R.; Renn, O.; Winterfeldt, D. von; Kotte, U.

    1985-01-01

    What are the targets and criteria on which national energy policy should be based. What priorities should be set, and how can different social interests be matched. To answer these questions, a new instrument of decision theory is presented which has been applied with good results to controversial political issues in the USA. The new technique is known under the name of value tree analysis. Members of important West German organisations (BDI, VDI, RWE, the Catholic and Protestant Church, Deutscher Naturschutzring, and ecological research institutions) were asked about the goals of their organisations. These goals were then ordered systematically and arranged in a hierarchical tree structure. The value trees of different groups can be combined into a catalogue of social criteria of acceptability and policy assessment. The authors describe the philosophy and methodology of value tree analysis and give an outline of its application in the development of a socially acceptable energy policy. (orig.) [de

  1. Adaptive Context Tree Weighting

    OpenAIRE

    O'Neill, Alexander; Hutter, Marcus; Shao, Wen; Sunehag, Peter

    2012-01-01

    We describe an adaptive context tree weighting (ACTW) algorithm, as an extension to the standard context tree weighting (CTW) algorithm. Unlike the standard CTW algorithm, which weights all observations equally regardless of the depth, ACTW gives increasing weight to more recent observations, aiming to improve performance in cases where the input sequence is from a non-stationary distribution. Data compression results show ACTW variants improving over CTW on merged files from standard compres...

  2. Type extension trees

    DEFF Research Database (Denmark)

    Jaeger, Manfred

    2006-01-01

    We introduce type extension trees as a formal representation language for complex combinatorial features of relational data. Based on a very simple syntax this language provides a unified framework for expressing features as diverse as embedded subgraphs on the one hand, and marginal counts...... of attribute values on the other. We show by various examples how many existing relational data mining techniques can be expressed as the problem of constructing a type extension tree and a discriminant function....

  3. Multiscale singularity trees

    DEFF Research Database (Denmark)

    Somchaipeng, Kerawit; Sporring, Jon; Johansen, Peter

    2007-01-01

    We propose MultiScale Singularity Trees (MSSTs) as a structure to represent images, and we propose an algorithm for image comparison based on comparing MSSTs. The algorithm is tested on 3 public image databases and compared to 2 state-of-theart methods. We conclude that the computational complexity...... of our algorithm only allows for the comparison of small trees, and that the results of our method are comparable with state-of-the-art using much fewer parameters for image representation....

  4. Tree Improvement Glossary

    DEFF Research Database (Denmark)

    Schmidt, Lars Holger

    Forest tree improvement encompasses a number of scientific and technical areas like floral-, reproductive- and micro-biology, genetics breeding methods and strategies, propagation, gene conservation, data analysis and statistics, each area with a comprehensive terminology. The terms selected...... for definition here are those most frequently used in tree improvement literature. Clonal propagation is included in the view of the great expansion of that field as a means of mass multiplication of improved material....

  5. Dependency Tree Annotation Software

    Science.gov (United States)

    2015-11-01

    between words. DTE supports the widely used Conference on Computational Natural Language Learning (CoNLL)-X format as well as several other file...formats, and it provides numerous options for customizing how dependency trees are displayed. Built entirely in Java , it can run on a wide range of...software application called Dependency Tree Editor (DTE) that can read files in Computational Natural Language Learning (CoNLL)-X format and use them

  6. Tree felling 2014

    CERN Multimedia

    2014-01-01

    With a view to creating new landscapes and making its population of trees safer and healthier, this winter CERN will complete the tree-felling campaign started in 2010.   Tree felling will take place between 15 and 22 November on the Swiss part of the Meyrin site. This work is being carried out above all for safety reasons. The trees to be cut down are at risk of falling as they are too old and too tall to withstand the wind. In addition, the roots of poplar trees are very powerful and spread widely, potentially damaging underground networks, pavements and roadways. Compensatory tree planting campaigns will take place in the future, subject to the availability of funding, with the aim of creating coherent landscapes while also respecting the functional constraints of the site. These matters are being considered in close collaboration with the Geneva nature and countryside directorate (Direction générale de la nature et du paysage, DGNP). GS-SE Group

  7. Anatomy of the Pythagoras' Tree

    Science.gov (United States)

    Teia, Luis

    2016-01-01

    The architecture of nature can be seen at play in a tree: no two are alike. The Pythagoras' tree behaves just as a "tree" in that the root plus the same movement repeated over and over again grows from a seed, to a plant, to a tree. In human life, this movement is termed cell division. With triples, this movement is a geometrical and…

  8. Attack Trees with Sequential Conjunction

    NARCIS (Netherlands)

    Jhawar, Ravi; Kordy, Barbara; Mauw, Sjouke; Radomirović, Sasa; Trujillo-Rasua, Rolando

    2015-01-01

    We provide the first formal foundation of SAND attack trees which are a popular extension of the well-known attack trees. The SAND at- tack tree formalism increases the expressivity of attack trees by intro- ducing the sequential conjunctive operator SAND. This operator enables the modeling of

  9. Influence of an extract of Juglans regia on the growth of Escherichia coli, on the electrophoretic profile of plasmid DNA and on the radiolabeling of blood constituents

    Directory of Open Access Journals (Sweden)

    Sebastião David Santos-Filho

    2008-12-01

    Full Text Available The aim of this work was to study the influence of a walnut (Juglans regia extract on the growth of Escherichia coli (E. coli AB1157, on the plasmid DNA topology and on the labeling of blood constituents with technetium-99m (99mTc. An E. coli AB1157 culture, in stationary phase, was incubated with walnut and the growth of the culture was evaluated by optical density at 600 nm for 7 hours. Plasmid DNA samples were incubated with SnCl2 in presence or absence of walnut for 40 minutes, 0.8% agarose gel electrophoresis was performed, the gel was stained and the plasmid topological forms were visualized. Blood samples from Wistar rats were incubated with walnut extract and an assay of labeling of blood constituents with technetium-99m (99mTc was performed. Blood cells and plasma were separated. The radioactivity in each fraction was counted and percentage of incorporated radioactivity (%ATI was determined. The results presented an inhibitory action of the growth of the E. coli AB1157 culture, no protective action of the walnut extract in plasmid DNA treated with SnCl2. Moreover, walnut was also not capable to induce modifications in the DNA mobility in agarose gel but walnut was capable to decrease the distribution of 99mTc on the blood cell compartment. In conclusion, our experimental data suggest that in the walnut extract has substances with an effect on the growth of E. coli culture, a potential action to increase the SnCl2 effect on plasmid DNA and also is capable to alter the distribution of 99mTc on the blood cell compartment probably due to redoxi properties.O objetivo desse trabalho foi estudar a influência de um extrato de nogueira (Juglans regia no crescimento de Escherichia coli (E. coli AB1157, na topologia do DNA plasmidial e na marcação de constituintes sanguíneos com tecnécio-99m (99mTc. Uma cultura de E. coli AB1157, em fase estacionária, foi incubada com nogueira e o crescimento da cultura foi avaliado por densidade óptica a

  10. Tree manipulation experiment

    Science.gov (United States)

    Nishina, K.; Takenaka, C.; Ishizuka, S.; Hashimoto, S.; Yagai, Y.

    2012-12-01

    Some forest operations such as thinning and harvesting management could cause changes in N cycling and N2O emission from soils, since thinning and harvesting managements are accompanied with changes in aboveground environments such as an increase of slash falling and solar radiation on the forest floor. However, a considerable uncertainty exists in effects of thinning and harvesting on N2O fluxes regarding changes in belowground environments by cutting trees. To focus on the effect of changes in belowground environments on the N2O emissions from soils, we conducted a tree manipulation experiment in Japanese cedar (Cryptomeria japonica) stand without soil compaction and slash falling near the chambers and measured N2O flux at 50 cm and 150 cm distances from the tree trunk (stump) before and after cutting. We targeted 5 trees for the manipulation and established the measurement chambers to the 4 directions around each targeted tree relative to upper slope (upper, left, right, lower positions). We evaluated the effect of logging on the emission by using hierarchical Bayesian model. HB model can evaluate the variability in observed data and their uncertainties in the estimation with various probability distributions. Moreover, the HB model can easily accommodate the non-linear relationship among the N2O emissions and the environmental factors, and explicitly take non-independent data (nested structure of data) for the estimation into account by using random effects in the model. Our results showed tree cutting stimulated N2O emission from soils, and also that the increase of N2O flux depended on the distance from the trunk (stump): the increase of N2O flux at 50 cm from the trunk (stump) was greater than that of 150 cm from the trunk. The posterior simulation of the HB model indicated that the stimulation of N2O emission by tree cut- ting could reach up to 200 cm in our experimental plot. By tree cutting, the estimated N2O emission at 0-40 cm from the trunk doubled

  11. Steiner trees in industry

    CERN Document Server

    Du, Ding-Zhu

    2001-01-01

    This book is a collection of articles studying various Steiner tree prob­ lems with applications in industries, such as the design of electronic cir­ cuits, computer networking, telecommunication, and perfect phylogeny. The Steiner tree problem was initiated in the Euclidean plane. Given a set of points in the Euclidean plane, the shortest network interconnect­ ing the points in the set is called the Steiner minimum tree. The Steiner minimum tree may contain some vertices which are not the given points. Those vertices are called Steiner points while the given points are called terminals. The shortest network for three terminals was first studied by Fermat (1601-1665). Fermat proposed the problem of finding a point to minimize the total distance from it to three terminals in the Euclidean plane. The direct generalization is to find a point to minimize the total distance from it to n terminals, which is still called the Fermat problem today. The Steiner minimum tree problem is an indirect generalization. Sch...

  12. Rhizogenic Induction in Adult Juglans regia L. cv. Serr Tissue Induced by Indole Butyric Acid and Agrobacterium rhizogenes Inducción Rizogénica en Tejido Adulto de Juglans regia L. cv. Serr Mediada por Ácido Indol Butírico y Agrobacterium rhizogenes

    Directory of Open Access Journals (Sweden)

    Manuel Sánchez-Olate

    2009-06-01

    Full Text Available The in vitro introduction of adult walnut (Juglans regia L. tissue represents an opportunity to clone elite genotypes whose selection occurs in advanced ontogenic states. With the purpose of developing a protocol to allow mass propagation of valuable genotypes from adult material, a comparison was made between two root induction systems of walnut microshoots of the fourth subculture of adult walnut tissue of an in vitro introduction program previously reinvigorated through traditional grafting. Rhizogenic induction by indole-3-butyric acid (IBA and Agrobacterium rhizogenes was used. The rhizogenic process was analyzed in two phases for both auxinic (T1: 3 mg L-1 IBA; T2: 5 mg L-1 IBA and A. rhizogenes inductions (T3: A-477; T4: A-478. The first phase of root induction was during 3 days in the dark while the second phase, root manifestation, was 27 days. Rooting percentage was evaluated and the induced root systems characterized (number, length, diameter, and root insertion zone in all the procedures. The best rooting results were obtained in T2, although the response obtained with A. rhizogenes didn’t differ from the T1 response. This appears to be an increasingly interesting methodology for adventitious rhizogenesis in this species.La introducción in vitro de tejido adulto de nogal (Juglans regia L. representa una oportunidad de clonación de genotipos elite, cuya selección ocurre en estados ontogénicos avanzados. Así, con el objeto de desarrollar un protocolo que permita la propagación masiva de genotipos valiosos a partir de material adulto, se compararon dos sistemas de inducción rizogénica de microtallos de nogal provenientes del cuarto subcultivo de un programa de introducción in vitro de tejido adulto de nogal, previamente revigorizado mediante injerto tradicional. Se utilizó la inducción rizogénica por ácido indol-3-butírico (AIB y Agrobacterium rhizogenes. El proceso rizogénico se analizó tanto para inducción aux

  13. Visualization of Uncertain Contour Trees

    DEFF Research Database (Denmark)

    Kraus, Martin

    2010-01-01

    Contour trees can represent the topology of large volume data sets in a relatively compact, discrete data structure. However, the resulting trees often contain many thousands of nodes; thus, many graph drawing techniques fail to produce satisfactory results. Therefore, several visualization methods...... were proposed recently for the visualization of contour trees. Unfortunately, none of these techniques is able to handle uncertain contour trees although any uncertainty of the volume data inevitably results in partially uncertain contour trees. In this work, we visualize uncertain contour trees...... by combining the contour trees of two morphologically filtered versions of a volume data set, which represent the range of uncertainty. These two contour trees are combined and visualized within a single image such that a range of potential contour trees is represented by the resulting visualization. Thus...

  14. TreeFam: 2008 Update

    DEFF Research Database (Denmark)

    Ruan, Jue; Li, Heng; Chen, Zhongzhong

    2008-01-01

    TreeFam (http://www.treefam.org) was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of TreeFam contains curated trees for 1314 families and automatically generated trees for another 14,351 families. We have...... expanded TreeFam to include 25 fully sequenced animal genomes, as well as four genomes from plant and fungal outgroup species. We have also introduced more accurate approaches for automatically grouping genes into families, for building phylogenetic trees, and for inferring orthologues and paralogues....... The user interface for viewing phylogenetic trees and family information has been improved. Furthermore, a new perl API lets users easily extract data from the TreeFam mysql database....

  15. Generic Ising trees

    DEFF Research Database (Denmark)

    Durhuus, Bergfinnur Jøgvan; Napolitano, George Maria

    2012-01-01

    The Ising model on a class of infinite random trees is defined as a thermodynamiclimit of finite systems. A detailed description of the corresponding distribution of infinite spin configurations is given. As an application, we study the magnetization properties of such systems and prove that they......The Ising model on a class of infinite random trees is defined as a thermodynamiclimit of finite systems. A detailed description of the corresponding distribution of infinite spin configurations is given. As an application, we study the magnetization properties of such systems and prove...... that they exhibit no spontaneous magnetization. Furthermore, the values of the Hausdorff and spectral dimensions of the underlying trees are calculated and found to be, respectively,¯dh =2 and¯ds = 4/3....

  16. The contribution of the roumanian research concerning the collecting and use of germoplasm from walnut trees

    Directory of Open Access Journals (Sweden)

    Eliane-Teodora STANCIOIU

    2009-05-01

    Full Text Available In Romania, due to the poor variety of the rootstock, the walnut tree is grafted by mixing different Junglas regia L. saplings. In the County of Gorj, 19 selections corresponding to the mains characteristics of the rootstock have been determinate. On these selections, various studies determinating their biological nature have been done; fruits have been gathered and used for the experimental reproductions in the sapling nursery. According to the selection criteria, every year, on each biotype, the springing percentage have been counted, together with the medium diameter by package, the medium height, the percentage of STAS saplings obtained, and of thriving in the grafting process using the Jupînesti type. The results of this analyse done in the sapling nursery have reached to the conclusion that the selection SL-10-TJ has obtained the highest springing percentage (86%. The medium height of the saplings indicates an irregular growth, which varies between 42 cm (SL-1-TP and 63 cm (EL-7-TJ. As per the diameter by package, it varies between 14.1 mm (SL-1-TJ and 16.5 mm (SL-18-TJ. The percentage of the springing STAS saplings is between 17% for the selection SL-15-TJ and 78% for the selection SL-6-TJ, and the thriving in the grafting process is high for all the selection, except for SL-9-TJ, with only 55%.

  17. Expansion of the agricultural frontier on riparian vegetation of Santa Cruz River, Cuba

    Directory of Open Access Journals (Sweden)

    Felipe Carricarte Rodríguez

    2016-12-01

    Full Text Available The work was developed in the Los Amaros, the Santa Cruz river, Artemisa, Cuba. The objective was to evaluate how it influences the expansion of the agricultural frontier on riparian vegetation where the semi-deciduous mesophytic forest (BsdMe predominates. A floristic characterization was performed, identifying the effects of disturbances on the structure and composition of these forests and their relation to human disturbance. A semi-structured interview was applied to all landowners in the study area. Species richness, dominance, basal area, total number of individuals, width of the strip covered by trees and shrubs, and area without vegetation on both banks of the river, respectively were considered as variables. There are differences in the structure and patterns of diversity of the studied forest, as a result of disturbances, with the consequent reduction of species; also anthropogenic disturbances, are the main factors that explain changes in the structure of these forests. They are identified as major species: Cupania macrophylla A. Rich., Roystonea regia HBK O. F. Cook., Guarea guidonia L. Sleumer and Trichilia hirta  L. It is proposed to deepen the effect of the expansion of agriculture into other sectors of the river in interaction with local communities.

  18. Consequences immediates et differees de periodes de secheresse estivale sur le developpement de jeunes noyers (Juglans regia L., cv Pedro ): dynamique de croissance et dormance automno-hivernale des bourgeons

    OpenAIRE

    Dreyer, Erwin; Mauget, Jean-Claude

    1986-01-01

    De jeunes noyers (Juglans regia L. cv « Pedro ») de 3 ans, cultivés dans des pots de 120 l en conditions naturelles, ont été soumis à des contraintes hydriques intenses mais de courte durée (2-3 semaines). Deux époques de traitement ont été retenues : au printemps, à la fin de la 1re vague d’allongement des pousses de l’année, et, à la fin de l’été, après l’arrêt de la 2e vague d’allongement. Ces traitements ont eu des effets : - immédiats (arrêt de croissance, réduction de surface foliai...

  19. Le virus de l'enroulement des feuilles du cerisier, largement repandu en France sur noyer, est-il a l'origine de l'incompatibilite de greffage du noyer Juglans regia sur Juglans nigra

    OpenAIRE

    Delbos, R.; Bonnet, A.; Dunez, Jean

    1984-01-01

    Sur les 2 millions de noyers exploités en France, la moitié environ est cultivée en verger : 20 p. 100 des arbres du verger français de noyer sont greffés sur Juglans nigra, le reste étant greffé sur J. regia. Des symptômes de nécrose de la zone de greffe sont signalés assez couramment sur les arbres greffés sur J. nigra, surtout depuis quelques années ; ces symptômes sont tout à fait semblables à ceux décrits aux U.S.A. dans le cas d’arbres greffés sur J. hindsii ou « Paradox » (J. hinds...

  20. Portraits of Tree Families

    NARCIS (Netherlands)

    Balgooy, van M.M.J.

    1998-01-01

    With the publication of the second volume of the series ‘Malesian Seed Plants’, entitled ‘Portraits of Tree Families’, I would like to refer to the Introduction of the first volume, ‘Spot-characters’ for a historical background and an explanation of the aims of this series. The present book treats

  1. Oak Tree Planting Project

    Science.gov (United States)

    Sherryl L. Nives; William D. Tietje; William H. Weitkamp

    1991-01-01

    An Oak Tree Planting Project was conducted during 1989/90 in San Luis Obispo County by the Integrated Hardwood Range Management Program (IHRMP)/Central Coast. The local media and an IHRMP workshop were used to publicize the Planting Project and give information on the status of oaks (Quercus spp.) in California and oak planting techniques. Outreach...

  2. P{owering 'Trees

    Indian Academy of Sciences (India)

    Melia dubia Cav. of Meliaceae is a large deciduous tree. Leaves are compound with toothed leaflets. Flowers are small, greenish-yellow in much-branched inflorescences. Fruits are green, ellipsoidal with a single seed covered by hard portion ( as in a mango fruit) and surrounded by fleshy pulp outside. The bark is bitter ...

  3. Base tree property

    Czech Academy of Sciences Publication Activity Database

    Balcar, B.; Doucha, Michal; Hrušák, M.

    2015-01-01

    Roč. 32, č. 1 (2015), s. 69-81 ISSN 0167-8094 R&D Projects: GA AV ČR IAA100190902 Institutional support: RVO:67985840 Keywords : forcing * Boolean algebras * base tree Subject RIV: BA - General Mathematics Impact factor: 0.614, year: 2015 http://link.springer.com/article/10.1007/s11083-013-9316-2

  4. How to Prune Trees

    Science.gov (United States)

    Peter Bedker; Joseph O' Brien; Manfred Mielke

    2012-01-01

    The objective of pruning is to produce strong, healthy, attractive plants. By understanding how, when and why to prune, and by following a few simple principles, this objective can be achievedHow to Prune Trees (Revised 2012) Agency Publisher: Agriculture Dept., Forest Service, Northeastern Area State and Price forestry USA List Price:$4.00 Sale...

  5. Multiquarks and Steiner trees

    International Nuclear Information System (INIS)

    Richard, Jean-Marc

    2010-01-01

    A brief review review is presented of models tentatively leading to stable multiquarks. A new attempt is presented, based on a Steiner-tree model of confinement, which is inspired by by QCD. It leads to more attraction than the empirical colour-additive model used in earlier multiquark calculations, and predict several multiquark states in configurations with different flavours.

  6. Christmas Tree Category Manual.

    Science.gov (United States)

    Bowman, James S.; Turmel, Jon P.

    This manual provides information needed to meet the standards for pesticide applicator certification. Pests and diseases of christmas tree plantations are identified and discussed. Section one deals with weeds and woody plants and the application, formulation and effects of herbicides in controlling them. Section two discusses specific diseases…

  7. Chapter 5 - Tree Mortality

    Science.gov (United States)

    Mark J. Ambrose

    2014-01-01

    Tree mortality is a natural process in all forest ecosystems. Extremely high mortality, however, can also be an indicator of forest health issues. On a regional scale, high mortality levels may indicate widespread insect or disease problems. High mortality may also occur if a large proportion of the forest in a particular region is made up of older, senescent stands....

  8. The TS-Tree

    DEFF Research Database (Denmark)

    Assent, Ira; Krieger, Ralph; Afschari, Farzad

    2008-01-01

    Continuous growth in sensor data and other temporal data increases the importance of retrieval and similarity search in time series data. Efficient time series query processing is crucial for interactive applications. Existing multidimensional indexes like the R-tree provide efficient querying fo...

  9. Tree Size Comparison of Some Important Street Trees Growing at ...

    African Journals Online (AJOL)

    PROF HORSFALL

    ABSTRACT: The importance of trees in urban environment is now widely recognized as they cleanse the ... urban environment prevent solar radiation from ..... In urban areas, tree height is an important consideration in deciding what species to plant and/or where to plant them. Considering that many urban tree. Fig. 7.

  10. Solution trees as a basis for game tree search

    NARCIS (Netherlands)

    A. de Bruin (Arie); W.H.L.M. Pijls (Wim); A. Plaat (Aske)

    1994-01-01

    textabstractA game tree algorithm is an algorithm computing the minimax value of the root of a game tree. Many algorithms use the notion of establishing proofs that this value lies above or below some boundary value. We show that this amounts to the construction of a solution tree. We discuss the

  11. A suffix tree or not a suffix tree?

    DEFF Research Database (Denmark)

    Starikovskaya, Tatiana; Vildhøj, Hjalte Wedel

    2015-01-01

    , in particular we do not require that S ends with a unique symbol. This corresponds to considering the more general definition of implicit or extended suffix trees. Such general suffix trees have many applications and are for example needed to allow efficient updates when suffix trees are built online. Deciding...

  12. Tree Transduction Tools for Cdec

    Directory of Open Access Journals (Sweden)

    Austin Matthews

    2014-09-01

    Full Text Available We describe a collection of open source tools for learning tree-to-string and tree-to-tree transducers and the extensions to the cdec decoder that enable translation with these. Our modular, easy-to-extend tools extract rules from trees or forests aligned to strings and trees subject to different structural constraints. A fast, multithreaded implementation of the Cohn and Blunsom (2009 model for extracting compact tree-to-string rules is also included. The implementation of the tree composition algorithm used by cdec is described, and translation quality and decoding time results are presented. Our experimental results add to the body of evidence suggesting that tree transducers are a compelling option for translation, particularly when decoding speed and translation model size are important.

  13. Selecting Landscape Plants: Shade Trees

    OpenAIRE

    Relf, Diane; Appleton, Bonnie Lee, 1948-2012; Close, David

    2015-01-01

    Because of the permanency of trees and their importance in the landscape, care must be taken to select the best species for each situation. This publication goes over how to choose landscape trees that are shade tolerant.

  14. Selecting Landscape Plants: Flowering Trees

    OpenAIRE

    Relf, Diane; Appleton, Bonnie Lee, 1948-2012

    2009-01-01

    This publication helps the reader to select wisely among the many species and varieties of flowering trees available. The following are considerations that should be taken into account when choosing flowering trees for the home landscape: selections factors, environmental responses, availability and adaptability, and flowering tree descriptions.

  15. Inferences from growing trees backwards

    Science.gov (United States)

    David W. Green; Kent A. McDonald

    1997-01-01

    The objective of this paper is to illustrate how longitudinal stress wave techniques can be useful in tracking the future quality of a growing tree. Monitoring the quality of selected trees in a plantation forest could provide early input to decisions on the effectiveness of management practices, or future utilization options, for trees in a plantation. There will...

  16. Generalising tree traversals to DAGs

    DEFF Research Database (Denmark)

    Bahr, Patrick; Axelsson, Emil

    2015-01-01

    We present a recursion scheme based on attribute grammars that can be transparently applied to trees and acyclic graphs. Our recursion scheme allows the programmer to implement a tree traversal and then apply it to compact graph representations of trees instead. The resulting graph traversals avoid...

  17. Our Air: Unfit for Trees.

    Science.gov (United States)

    Dochinger, Leon S.

    To help urban, suburban, and rural tree owners know about air pollution's effects on trees and their tolerance and intolerance to pollutants, the USDA Forest Service has prepared this booklet. It answers the following questions about atmospheric pollution: Where does it come from? What can it do to trees? and What can we do about it? In addition,…

  18. The Hopi Fruit Tree Book.

    Science.gov (United States)

    Nyhuis, Jane

    Referring as often as possible to traditional Hopi practices and to materials readily available on the reservation, the illustrated booklet provides information on the care and maintenance of young fruit trees. An introduction to fruit trees explains the special characteristics of new trees, e.g., grafting, planting pits, and watering. The…

  19. Rectilinear Full Steiner Tree Generation

    DEFF Research Database (Denmark)

    Zachariasen, Martin

    1999-01-01

    The fastest exact algorithm (in practice) for the rectilinear Steiner tree problem in the plane uses a two-phase scheme: First, a small but sufficient set of full Steiner trees (FSTs) is generated and then a Steiner minimum tree is constructed from this set by using simple backtrack search, dynamic...

  20. DensiTree: making sense of sets of phylogenetic trees.

    Science.gov (United States)

    Bouckaert, Remco R

    2010-05-15

    Bayesian analysis through programs like BEAST (Drummond and Rumbaut, 2007) and MrBayes (Huelsenbeck et al., 2001) provides a powerful method for reconstruction of evolutionary relationships. One of the benefits of Bayesian methods is that well-founded estimates of uncertainty in models can be made available. So, for example, not only the mean time of a most recent common ancestor (tMRCA) is estimated, but also the spread. This distribution over model space is represented by a set of trees, which can be rather large and difficult to interpret. DensiTree is a tool that helps navigating these sets of trees. The main idea behind DensiTree is to draw all trees in the set transparently. As a result, areas where a lot of the trees agree in topology and branch lengths show up as highly colored areas, while areas with little agreement show up as webs. This makes it possible to quickly get an impression of properties of the tree set such as well-supported clades, distribution of tMRCA and areas of topological uncertainty. Thus, DensiTree provides a quick method for qualitative analysis of tree sets. DensiTree is freely available from http://compevol.auckland.ac.nz/software/DensiTree/. The program is licensed under GPL and source code is available. remco@cs.auckland.ac.nz

  1. Tree Colors: Color Schemes for Tree-Structured Data.

    Science.gov (United States)

    Tennekes, Martijn; de Jonge, Edwin

    2014-12-01

    We present a method to map tree structures to colors from the Hue-Chroma-Luminance color model, which is known for its well balanced perceptual properties. The Tree Colors method can be tuned with several parameters, whose effect on the resulting color schemes is discussed in detail. We provide a free and open source implementation with sensible parameter defaults. Categorical data are very common in statistical graphics, and often these categories form a classification tree. We evaluate applying Tree Colors to tree structured data with a survey on a large group of users from a national statistical institute. Our user study suggests that Tree Colors are useful, not only for improving node-link diagrams, but also for unveiling tree structure in non-hierarchical visualizations.

  2. 75 FR 25103 - Tree Assistance Program

    Science.gov (United States)

    2010-05-07

    ... produced for commercial purposes, such as a maple tree for syrup, papaya tree, or orchard tree. Trees used... tomato plants, biennials such as the plants that produce strawberries, and annuals such as pumpkins...

  3. Fault-Tree Compiler Program

    Science.gov (United States)

    Butler, Ricky W.; Martensen, Anna L.

    1992-01-01

    FTC, Fault-Tree Compiler program, is reliability-analysis software tool used to calculate probability of top event of fault tree. Five different types of gates allowed in fault tree: AND, OR, EXCLUSIVE OR, INVERT, and M OF N. High-level input language of FTC easy to understand and use. Program supports hierarchical fault-tree-definition feature simplifying process of description of tree and reduces execution time. Solution technique implemented in FORTRAN, and user interface in Pascal. Written to run on DEC VAX computer operating under VMS operating system.

  4. Making CSB + -Trees Processor Conscious

    DEFF Research Database (Denmark)

    Samuel, Michael; Pedersen, Anders Uhl; Bonnet, Philippe

    2005-01-01

    Cache-conscious indexes, such as CSB+-tree, are sensitive to the underlying processor architecture. In this paper, we focus on how to adapt the CSB+-tree so that it performs well on a range of different processor architectures. Previous work has focused on the impact of node size on the performance...... of the CSB+-tree. We argue that it is necessary to consider a larger group of parameters in order to adapt CSB+-tree to processor architectures as different as Pentium and Itanium. We identify this group of parameters and study how it impacts the performance of CSB+-tree on Itanium 2. Finally, we propose...

  5. Trees for future forests

    DEFF Research Database (Denmark)

    Lobo, Albin

    Climate change creates new challenges in forest management. The increase in temperature may in the long run be beneficial for the forests in the northern latitudes, but the high rate at which climate change is predicted to proceed will make adaptation difficult because trees are long living sessile...... of precipitation. Adaptive traits such as phenology which is sensitive to changes in temperature and drought resistance as a response to water scarcity are studied. Quantitative genetics is extensively used in field phenotyping to identify the availability of sufficient genetic variation within species. Other...... as a faster mechanism in aiding climate change adaptation in trees. Drought resistance varied among the different species belonging to a single genus showing the inherent capacity of native species to overcome water scarcity in severely drought prone regions of the world. More research into the important...

  6. Wood for the trees

    Directory of Open Access Journals (Sweden)

    Rob Garbutt

    2013-10-01

    Full Text Available Our paper focuses on the materiality, cultural history and cultural relations of selected artworks in the exhibition Wood for the trees (Lismore Regional Gallery, New South Wales, Australia, 10 June – 17 July 2011. The title of the exhibition, intentionally misreading the aphorism “Can’t see the wood for the trees”, by reading the wood for the resource rather than the collective wood[s], implies conservation, preservation, and the need for sustaining the originating resource. These ideas have particular resonance on the NSW far north coast, a region once rich in rainforest. While the Indigenous population had sustainable practices of forest and land management, the colonists deployed felling and harvesting in order to convert the value of the local, abundant rainforest trees into high-value timber. By the late twentieth century, however, a new wave of settlers launched a protest movements against the proposed logging of remnant rainforest at Terania Creek and elsewhere in the region. Wood for the trees, curated by Gallery Director Brett Adlington, plays on this dynamic relationship between wood, trees and people. We discuss the way selected artworks give expression to the themes or concepts of productive labour, nature and culture, conservation and sustainability, and memory. The artworks include Watjinbuy Marrawilil’s (1980 Carved ancestral figure ceremonial pole, Elizabeth Stops’ (2009/10 Explorations into colonisation, Hossein Valamanesh’s (2008 Memory stick, and AñA Wojak’s (2008 Unread book (in a forgotten language. Our art writing on the works, a practice informed by Bal (2002, Muecke (2008 and Papastergiadis (2004, becomes a conversation between the works and the themes or concepts. As a form of material excess of the most productive kind (Grosz, 2008, p. 7, art seeds a response to that which is in the air waiting to be said of the past, present and future.

  7. Pushdown machines for the macro tree transducer

    NARCIS (Netherlands)

    Engelfriet, Joost; Vogler, Heiko

    1986-01-01

    The macro tree transducer can be considered as a system of recursive function procedures with parameters, where the recursion is on a tree (e.g., the syntax tree of a program). We investigate characterizations of the class of tree (tree-to-string) translations which is induced by macro tree

  8. Recursive Trees for Practical ORAM

    Directory of Open Access Journals (Sweden)

    Moataz Tarik

    2015-06-01

    Full Text Available We present a new, general data structure that reduces the communication cost of recent tree-based ORAMs. Contrary to ORAM trees with constant height and path lengths, our new construction r-ORAM allows for trees with varying shorter path length. Accessing an element in the ORAM tree results in different communication costs depending on the location of the element. The main idea behind r-ORAM is a recursive ORAM tree structure, where nodes in the tree are roots of other trees. While this approach results in a worst-case access cost (tree height at most as any recent tree-based ORAM, we show that the average cost saving is around 35% for recent binary tree ORAMs. Besides reducing communication cost, r-ORAM also reduces storage overhead on the server by 4% to 20% depending on the ORAM’s client memory type. To prove r-ORAM’s soundness, we conduct a detailed overflow analysis. r-ORAM’s recursive approach is general in that it can be applied to all recent tree ORAMs, both constant and poly-log client memory ORAMs. Finally, we implement and benchmark r-ORAM in a practical setting to back up our theoretical claims.

  9. Mathematical foundations of event trees

    International Nuclear Information System (INIS)

    Papazoglou, Ioannis A.

    1998-01-01

    A mathematical foundation from first principles of event trees is presented. The main objective of this formulation is to offer a formal basis for developing automated computer assisted construction techniques for event trees. The mathematical theory of event trees is based on the correspondence between the paths of the tree and the elements of the outcome space of a joint event. The concept of a basic cylinder set is introduced to describe joint event outcomes conditional on specific outcomes of basic events or unconditional on the outcome of basic events. The concept of outcome space partition is used to describe the minimum amount of information intended to be preserved by the event tree representation. These concepts form the basis for an algorithm for systematic search for and generation of the most compact (reduced) form of an event tree consistent with the minimum amount of information the tree should preserve. This mathematical foundation allows for the development of techniques for automated generation of event trees corresponding to joint events which are formally described through other types of graphical models. Such a technique has been developed for complex systems described by functional blocks and it is reported elsewhere. On the quantification issue of event trees, a formal definition of a probability space corresponding to the event tree outcomes is provided. Finally, a short discussion is offered on the relationship of the presented mathematical theory with the more general use of event trees in reliability analysis of dynamic systems

  10. (Almost) practical tree codes

    KAUST Repository

    Khina, Anatoly

    2016-08-15

    We consider the problem of stabilizing an unstable plant driven by bounded noise over a digital noisy communication link, a scenario at the heart of networked control. To stabilize such a plant, one needs real-time encoding and decoding with an error probability profile that decays exponentially with the decoding delay. The works of Schulman and Sahai over the past two decades have developed the notions of tree codes and anytime capacity, and provided the theoretical framework for studying such problems. Nonetheless, there has been little practical progress in this area due to the absence of explicit constructions of tree codes with efficient encoding and decoding algorithms. Recently, linear time-invariant tree codes were proposed to achieve the desired result under maximum-likelihood decoding. In this work, we take one more step towards practicality, by showing that these codes can be efficiently decoded using sequential decoding algorithms, up to some loss in performance (and with some practical complexity caveats). We supplement our theoretical results with numerical simulations that demonstrate the effectiveness of the decoder in a control system setting.

  11. Submodular unsplittable flow on trees

    DEFF Research Database (Denmark)

    Adamaszek, Anna Maria; Chalermsook, Parinya; Ene, Alina

    2016-01-01

    We study the Unsplittable Flow problem (UFP) on trees with a submodular objective function. The input to this problem is a tree with edge capacities and a collection of tasks, each characterized by a source node, a sink node, and a demand. A subset of the tasks is feasible if the tasks can...... simultaneously send their demands from the source to the sink without violating the edge capacities. The goal is to select a feasible subset of the tasks that maximizes a submodular objective function. Our main result is an O(k log n)-approximation algorithm for Submodular UFP on trees where k denotes...... the pathwidth of the given tree. Since every tree has pathwidth O(log n), we obtain an O(log2 n) approximation for arbitrary trees. This is the first non-trivial approximation guarantee for the problem and it matches the best approximation known for UFP on trees with a linear objective function. Our main...

  12. Rate of tree carbon accumulation increases continuously with tree size

    Science.gov (United States)

    Stephenson, N.L.; Das, A.J.; Condit, R.; Russo, S.E.; Baker, P.J.; Beckman, N.G.; Coomes, D.A.; Lines, E.R.; Morris, W.K.; Rüger, N.; Álvarez, E.; Blundo, C.; Bunyavejchewin, S.; Chuyong, G.; Davies, S.J.; Duque, Á.; Ewango, C.N.; Flores, O.; Franklin, J.F.; Grau, H.R.; Hao, Z.; Harmon, M.E.; Hubbell, S.P.; Kenfack, D.; Lin, Y.; Makana, J.-R.; Malizia, A.; Malizia, L.R.; Pabst, R.J.; Pongpattananurak, N.; Su, S.-H.; Sun, I-F.; Tan, S.; Thomas, D.; van Mantgem, P.J.; Wang, X.; Wiser, S.K.; Zavala, M.A.

    2014-01-01

    Forests are major components of the global carbon cycle, providing substantial feedback to atmospheric greenhouse gas concentrations. Our ability to understand and predict changes in the forest carbon cycle—particularly net primary productivity and carbon storage - increasingly relies on models that represent biological processes across several scales of biological organization, from tree leaves to forest stands. Yet, despite advances in our understanding of productivity at the scales of leaves and stands, no consensus exists about the nature of productivity at the scale of the individual tree, in part because we lack a broad empirical assessment of whether rates of absolute tree mass growth (and thus carbon accumulation) decrease, remain constant, or increase as trees increase in size and age. Here we present a global analysis of 403 tropical and temperate tree species, showing that for most species mass growth rate increases continuously with tree size. Thus, large, old trees do not act simply as senescent carbon reservoirs but actively fix large amounts of carbon compared to smaller trees; at the extreme, a single big tree can add the same amount of carbon to the forest within a year as is contained in an entire mid-sized tree. The apparent paradoxes of individual tree growth increasing with tree size despite declining leaf-level and stand-level productivity can be explained, respectively, by increases in a tree’s total leaf area that outpace declines in productivity per unit of leaf area and, among other factors, age-related reductions in population density. Our results resolve conflicting assumptions about the nature of tree growth, inform efforts to understand and model forest carbon dynamics, and have additional implications for theories of resource allocation and plant senescence.

  13. TREE SYMBOLISM IN SLAVIC FOLK CULTURE: APPLE TREE

    Directory of Open Access Journals (Sweden)

    Tatyana A. Agapkina

    2017-03-01

    Full Text Available The essay focuses on the mythopoetic image of the apple tree and its ritual use in traditional culture and folklore of the Slavic nations. The work employs folklore material alongside ethnographic and linguistic data that accentuates and develops the folklore symbolism of the apple tree. I argue that this image is comprised of a number of relatively autonomous fragments. The apple tree and its apples are a family metaphor of a kind symbolizing a mother and a child. In wedding folklore, the apple tree stands for a bride as the wedding ritual testifies; apple tree branches are widely used in the ritual itself (as a ritual tree or as material used in the making of a wedding banner, wedding wreaths, decorations for a wedding loaf [karavai], etc.. Another manifestation of the apple tree in folklore is the tree of knowledge; it relates the image to a large number of legendary etiological plots such as: Eve’s temptation by the Serpent, fall of Eve and Adam, the origin of Adam’s Apple (adam, prohibition to eat apples before the church holiday of Transfiguration and some others. At the same time, their autonomy regardless, the fragments of the mythopoetic image of the apple tree form part of the solid folklore universe and counteract with each other within this framework.

  14. Tree plastic bark

    OpenAIRE

    Casado Arroyo, Carlos

    2016-01-01

    Tree plastic bark" consiste en la realización de una intervención artística en un entorno natural concreto, generando de esta manera un Site Specific(1). Como hace alusión Rosalind Krauss en sus reflexiones “La escultura en el campo expandido”(2), comenta que su origen esta claramente ligado con el concepto de monumentalidad. La escultura es un monumento, se crea para conmemorar algún hecho o personaje relevante y está realizada para una ubicación concreta. La investigación parte de la id...

  15. The fault-tree compiler

    Science.gov (United States)

    Martensen, Anna L.; Butler, Ricky W.

    1987-01-01

    The Fault Tree Compiler Program is a new reliability tool used to predict the top event probability for a fault tree. Five different gate types are allowed in the fault tree: AND, OR, EXCLUSIVE OR, INVERT, and M OF N gates. The high level input language is easy to understand and use when describing the system tree. In addition, the use of the hierarchical fault tree capability can simplify the tree description and decrease program execution time. The current solution technique provides an answer precise (within the limits of double precision floating point arithmetic) to the five digits in the answer. The user may vary one failure rate or failure probability over a range of values and plot the results for sensitivity analyses. The solution technique is implemented in FORTRAN; the remaining program code is implemented in Pascal. The program is written to run on a Digital Corporation VAX with the VMS operation system.

  16. Large Deviations for Random Trees.

    Science.gov (United States)

    Bakhtin, Yuri; Heitsch, Christine

    2008-08-01

    We consider large random trees under Gibbs distributions and prove a Large Deviation Principle (LDP) for the distribution of degrees of vertices of the tree. The LDP rate function is given explicitly. An immediate consequence is a Law of Large Numbers for the distribution of vertex degrees in a large random tree. Our motivation for this study comes from the analysis of RNA secondary structures.

  17. Tree felling: a necessary evil

    CERN Multimedia

    CERN Bulletin

    2013-01-01

    CERN started a campaign of tree felling in 2010 for safety reasons, and it will continue this year in various parts of the Meyrin site. As in previous years, the trees cut down in 2013 will be recycled and some will be replaced.   Diseased tree that had to be cut down on the Meyrin site. In association with the Geneva nature and countryside directorate (Direction générale de la nature et du paysage, DGNP), CERN commissioned the Geneva school of landscaping, engineering and architecture (Haute école du paysage, d’ingénierie et d’architecture, HEPIA) to compile an inventory of the trees on the Meyrin site. In total, 1285 trees (excluding poplars) were recorded. 75.5% of these trees were declared to be in a good state of health (i.e. 971 trees), 21.5% in a moderate state of health (276 trees) and 3% in a poor state of health (38 trees). As for the poplars, the 236 specimens recorded on the Meyrin site were judged to be too old, to...

  18. Human decision error (HUMDEE) trees

    International Nuclear Information System (INIS)

    Ostrom, L.T.

    1993-01-01

    Graphical presentations of human actions in incident and accident sequences have been used for many years. However, for the most part, human decision making has been underrepresented in these trees. This paper presents a method of incorporating the human decision process into graphical presentations of incident/accident sequences. This presentation is in the form of logic trees. These trees are called Human Decision Error Trees or HUMDEE for short. The primary benefit of HUMDEE trees is that they graphically illustrate what else the individuals involved in the event could have done to prevent either the initiation or continuation of the event. HUMDEE trees also present the alternate paths available at the operator decision points in the incident/accident sequence. This is different from the Technique for Human Error Rate Prediction (THERP) event trees. There are many uses of these trees. They can be used for incident/accident investigations to show what other courses of actions were available and for training operators. The trees also have a consequence component so that not only the decision can be explored, also the consequence of that decision

  19. Making CSB + -Trees Processor Conscious

    DEFF Research Database (Denmark)

    Samuel, Michael; Pedersen, Anders Uhl; Bonnet, Philippe

    2005-01-01

    Cache-conscious indexes, such as CSB+-tree, are sensitive to the underlying processor architecture. In this paper, we focus on how to adapt the CSB+-tree so that it performs well on a range of different processor architectures. Previous work has focused on the impact of node size on the performan...... a systematic method for adapting CSB+-tree to new platforms. This work is a first step towards integrating CSB+-tree in MySQL’s heap storage manager....

  20. The Steiner tree problem

    CERN Document Server

    Hwang, FK; Winter, P

    1992-01-01

    The Steiner problem asks for a shortest network which spans a given set of points. Minimum spanning networks have been well-studied when all connections are required to be between the given points. The novelty of the Steiner tree problem is that new auxiliary points can be introduced between the original points so that a spanning network of all the points will be shorter than otherwise possible. These new points are called Steiner points - locating them has proved problematic and research has diverged along many different avenues. This volume is devoted to the assimilation of the rich field of intriguing analyses and the consolidation of the fragments. A section has been given to each of the three major areas of interest which have emerged. The first concerns the Euclidean Steiner Problem, historically the original Steiner tree problem proposed by Jarník and Kössler in 1934. The second deals with the Steiner Problem in Networks, which was propounded independently by Hakimi and Levin and has enjoyed the most...

  1. Genealogy and gene trees.

    Science.gov (United States)

    Rasmuson, Marianne

    2008-02-01

    Heredity can be followed in persons or in genes. Persons can be identified only a few generations back, but simplified models indicate that universal ancestors to all now living persons have occurred in the past. Genetic variability can be characterized as variants of DNA sequences. Data are available only from living persons, but from the pattern of variation gene trees can be inferred by means of coalescence models. The merging of lines backwards in time leads to a MRCA (most recent common ancestor). The time and place of living for this inferred person can give insights in human evolutionary history. Demographic processes are incorporated in the model, but since culture and customs are known to influence demography the models used ought to be tested against available genealogy. The Icelandic data base offers a possibility to do so and points to some discrepancies. Mitochondrial DNA and Y chromosome patterns give a rather consistent view of human evolutionary history during the latest 100 000 years but the earlier epochs of human evolution demand gene trees with longer branches. The results of such studies reveal as yet unsolved problems about the sources of our genome.

  2. Distributed Merge Trees

    Energy Technology Data Exchange (ETDEWEB)

    Morozov, Dmitriy; Weber, Gunther

    2013-01-08

    Improved simulations and sensors are producing datasets whose increasing complexity exhausts our ability to visualize and comprehend them directly. To cope with this problem, we can detect and extract significant features in the data and use them as the basis for subsequent analysis. Topological methods are valuable in this context because they provide robust and general feature definitions. As the growth of serial computational power has stalled, data analysis is becoming increasingly dependent on massively parallel machines. To satisfy the computational demand created by complex datasets, algorithms need to effectively utilize these computer architectures. The main strength of topological methods, their emphasis on global information, turns into an obstacle during parallelization. We present two approaches to alleviate this problem. We develop a distributed representation of the merge tree that avoids computing the global tree on a single processor and lets us parallelize subsequent queries. To account for the increasing number of cores per processor, we develop a new data structure that lets us take advantage of multiple shared-memory cores to parallelize the work on a single node. Finally, we present experiments that illustrate the strengths of our approach as well as help identify future challenges.

  3. Occurrence of leguminous trees

    Energy Technology Data Exchange (ETDEWEB)

    Kirkbride, J.H.; Arkcoll, D.B.A.; Turnbull, J.W.; Magalhaes, L.M.S.; Fernandes, N.P.

    1984-01-01

    Five papers from the symposium are presented. Kirkbride, J.H. Jr.; Legumes of the cerrado. pp 23-46 (Refs. 55) A review is given. Some 548 legume species in 59 genera are listed that have been reported from cerrado vegetation. Felker, P.; Legume trees in semi-arid and arid areas. pp 47-59 (Refs. 41) A review is given of worldwide research activities. Arkcoll, D.B.; A comparison of some fast growing species suitable for woodlots in the wet tropics. pp 61-68 (Refs. 9) Studies are described near Manaus on intensive silviculture (for fuelwood production) of Eucalyptus deglupta, Cedrelinga catanaeformis (catenaeformis), Jacaranda copaia, and Inga edulis. Turnbull, J.W.; Six phyllodinous Acacia species for planting in the humid tropical lowlands. pp 69-73 (Refs. 14) Distribution, ecology, growth, and utilization are described for A. auriculiformis, A. mangium, A. aulacocarpa, A. crassicarpa, A. cincinnata, and A. polystachya. Magalhaes, L.M.S., Fernandes, N.P.; Experimental stands of leguminous trees in the Manaus region. pp 75-79 (Refs. 8) Performance up to age 20 yr of Cedrelinga catenaeformis, Dalbergia nigra, Dinizia excelsa, Dipteryx odorata, Dipteryx sp., Diplotropis sp., Eperua bijuga, Pithecellobium racemosum, Vouacapoua pallidior, and Hymenaea sp. is described.

  4. Visualizing Individual Tree Differences in Tree-Ring Studies

    Directory of Open Access Journals (Sweden)

    Mario Trouillier

    2018-04-01

    Full Text Available Averaging tree-ring measurements from multiple individuals is one of the most common procedures in dendrochronology. It serves to filter out noise from individual differences between trees, such as competition, height, and micro-site effects, which ideally results in a site chronology sensitive to regional scale factors such as climate. However, the climate sensitivity of individual trees can be modulated by factors like competition, height, and nitrogen deposition, calling attention to whether average chronologies adequately assess climatic growth-control. In this study, we demonstrate four simple but effective methods to visually assess differences between individual trees. Using individual tree climate-correlations we: (1 employed jitter plots with superimposed metadata to assess potential causes for these differences; (2 plotted the frequency distributions of climate correlations over time as heat maps; (3 mapped the spatial distribution of climate sensitivity over time to assess spatio-temporal dynamics; and (4 used t-distributed Stochastic Neighborhood Embedding (t-SNE to assess which trees were generally more similar in terms of their tree-ring pattern and their correlation with climate variables. This suite of exploratory methods can indicate if individuals in tree-ring datasets respond differently to climate variability, and therefore, should not solely be explored with climate correlations of the mean population chronology.

  5. Relating phylogenetic trees to transmission trees of infectious disease outbreaks.

    Science.gov (United States)

    Ypma, Rolf J F; van Ballegooijen, W Marijn; Wallinga, Jacco

    2013-11-01

    Transmission events are the fundamental building blocks of the dynamics of any infectious disease. Much about the epidemiology of a disease can be learned when these individual transmission events are known or can be estimated. Such estimations are difficult and generally feasible only when detailed epidemiological data are available. The genealogy estimated from genetic sequences of sampled pathogens is another rich source of information on transmission history. Optimal inference of transmission events calls for the combination of genetic data and epidemiological data into one joint analysis. A key difficulty is that the transmission tree, which describes the transmission events between infected hosts, differs from the phylogenetic tree, which describes the ancestral relationships between pathogens sampled from these hosts. The trees differ both in timing of the internal nodes and in topology. These differences become more pronounced when a higher fraction of infected hosts is sampled. We show how the phylogenetic tree of sampled pathogens is related to the transmission tree of an outbreak of an infectious disease, by the within-host dynamics of pathogens. We provide a statistical framework to infer key epidemiological and mutational parameters by simultaneously estimating the phylogenetic tree and the transmission tree. We test the approach using simulations and illustrate its use on an outbreak of foot-and-mouth disease. The approach unifies existing methods in the emerging field of phylodynamics with transmission tree reconstruction methods that are used in infectious disease epidemiology.

  6. TreeVector: scalable, interactive, phylogenetic trees for the web.

    Directory of Open Access Journals (Sweden)

    Ralph Pethica

    2010-01-01

    Full Text Available Phylogenetic trees are complex data forms that need to be graphically displayed to be human-readable. Traditional techniques of plotting phylogenetic trees focus on rendering a single static image, but increases in the production of biological data and large-scale analyses demand scalable, browsable, and interactive trees.We introduce TreeVector, a Scalable Vector Graphics-and Java-based method that allows trees to be integrated and viewed seamlessly in standard web browsers with no extra software required, and can be modified and linked using standard web technologies. There are now many bioinformatics servers and databases with a range of dynamic processes and updates to cope with the increasing volume of data. TreeVector is designed as a framework to integrate with these processes and produce user-customized phylogenies automatically. We also address the strengths of phylogenetic trees as part of a linked-in browsing process rather than an end graphic for print.TreeVector is fast and easy to use and is available to download precompiled, but is also open source. It can also be run from the web server listed below or the user's own web server. It has already been deployed on two recognized and widely used database Web sites.

  7. Picking a tree: habitat use by the tree agama, Acanthocercus ...

    African Journals Online (AJOL)

    We studied tree agama (Acanthocercus a. atricollis) habitat use in the Magaliesberg mountain range in northern South Africa using sightings of marked individuals, and in a few cases, radio-telemetry. Acanthocercus a. atricollis preferentially selected thorn trees (46%; Acacia karroo), followed by common sugarbush (10%; ...

  8. Urban tree database and allometric equations

    Science.gov (United States)

    E. Gregory McPherson; Natalie S. van Doorn; Paula J.  Peper

    2016-01-01

    Information on urban tree growth underpins models used to calculate the effects of trees on the environment and human well-being. Maximum tree size and other growth data are used by urban forest managers, landscape architects, and planners to select trees most suitable to the amount of growing space, thereby reducing costly future conflicts between trees and...

  9. Genetic transformation of forest trees

    African Journals Online (AJOL)

    Admin

    the stress from the regeneration process. We hope that the great progress achieved in the biology of. Agrobacterium and the expression of the genes playing key role in plant development will be helpful in solving the constraint linked to the genetic transformation of forest trees. Genetic transformation of forest trees offers a ...

  10. Chain-Constrained Spanning Trees

    NARCIS (Netherlands)

    Olver, N.K.; Zenklusen, R.

    2013-01-01

    We consider the problem of finding a spanning tree satisfying a family of additional constraints. Several settings have been considered previously, the most famous being the problem of finding a spanning tree with degree constraints. Since the problem is hard, the goal is typically to find a

  11. Tree Hydraulics: How Sap Rises

    Science.gov (United States)

    Denny, Mark

    2012-01-01

    Trees transport water from roots to crown--a height that can exceed 100 m. The physics of tree hydraulics can be conveyed with simple fluid dynamics based upon the Hagen-Poiseuille equation and Murray's law. Here the conduit structure is modelled as conical pipes and as branching pipes. The force required to lift sap is generated mostly by…

  12. Using farm trees for fuelwood

    Energy Technology Data Exchange (ETDEWEB)

    Poulsen, G.

    1983-01-01

    In the tropics, a significant proportion of wood supplies is obtained from trees on farmland rather than from forest. Reliable estimates of wood fuel resources are difficult to obtain by conventional mensuration techniques since such trees are often subjected to regular heavy pruning and pollarding. Productive potential of hedgerows and other small scrub vegetation used for fuel is also difficult to measure.

  13. Genome Trees from Conservation Profiles.

    Directory of Open Access Journals (Sweden)

    2005-12-01

    Full Text Available The concept of the genome tree depends on the potential evolutionary significance in the clustering of species according to similarities in the gene content of their genomes. In this respect, genome trees have often been identified with species trees. With the rapid expansion of genome sequence data it becomes of increasing importance to develop accurate methods for grasping global trends for the phylogenetic signals that mutually link the various genomes. We therefore derive here the methodological concept of genome trees based on protein conservation profiles in multiple species. The basic idea in this derivation is that the multi-component "presence-absence" protein conservation profiles permit tracking of common evolutionary histories of genes across multiple genomes. We show that a significant reduction in informational redundancy is achieved by considering only the subset of distinct conservation profiles. Beyond these basic ideas, we point out various pitfalls and limitations associated with the data handling, paving the way for further improvements. As an illustration for the methods, we analyze a genome tree based on the above principles, along with a series of other trees derived from the same data and based on pair-wise comparisons (ancestral duplication-conservation and shared orthologs. In all trees we observe a sharp discrimination between the three primary domains of life: Bacteria, Archaea, and Eukarya. The new genome tree, based on conservation profiles, displays a significant correspondence with classically recognized taxonomical groupings, along with a series of departures from such conventional clusterings.

  14. Tree physiology and bark beetles

    Science.gov (United States)

    Michael G. Ryan; Gerard Sapes; Anna Sala; Sharon Hood

    2015-01-01

    Irruptive bark beetles usually co-occur with their co-evolved tree hosts at very low (endemic) population densities. However, recent droughts and higher temperatures have promoted widespread tree mortality with consequences for forest carbon, fire and ecosystem services (Kurz et al., 2008; Raffa et al., 2008; Jenkins et al., 2012). In this issue of New Phytologist,...

  15. Who pays for tree improvement?

    Science.gov (United States)

    Tom D. Byram; E. M. Raley

    2011-01-01

    Tree improvement has been one of the most successful collaborative research efforts in history, eliciting participation from a wide variety of players. This effort has included state forestry agencies, research universities, integrated forest industries, and the USDA Forest Service. Tree improvement was organized through cooperatives whose objectives were to distribute...

  16. Automated Generation of Attack Trees

    DEFF Research Database (Denmark)

    Vigo, Roberto; Nielson, Flemming; Nielson, Hanne Riis

    2014-01-01

    -prone and impracticable for large systems. Nonetheless, the automated generation of attack trees has only been explored in connection to computer networks and levering rich models, whose analysis typically leads to an exponential blow-up of the state space. We propose a static analysis approach where attack trees...

  17. Adjustable chain trees for proteins

    DEFF Research Database (Denmark)

    Winter, Pawel; Fonseca, Rasmus

    2012-01-01

    A chain tree is a data structure for changing protein conformations. It enables very fast detection of clashes and free energy potential calculations. A modified version of chain trees that adjust themselves to the changing conformations of folding proteins is introduced. This results in much...

  18. Visualizing Contour Trees within Histograms

    DEFF Research Database (Denmark)

    Kraus, Martin

    2010-01-01

    Many of the topological features of the isosurfaces of a scalar volume field can be compactly represented by its contour tree. Unfortunately, the contour trees of most real-world volume data sets are too complex to be visualized by dot-and-line diagrams. Therefore, we propose a new visualization ...

  19. Modelling tree biomasses in Finland

    Energy Technology Data Exchange (ETDEWEB)

    Repola, J.

    2013-06-01

    Biomass equations for above- and below-ground tree components of Scots pine (Pinus sylvestris L), Norway spruce (Picea abies [L.] Karst) and birch (Betula pendula Roth and Betula pubescens Ehrh.) were compiled using empirical material from a total of 102 stands. These stands (44 Scots pine, 34 Norway spruce and 24 birch stands) were located mainly on mineral soil sites representing a large part of Finland. The biomass models were based on data measured from 1648 sample trees, comprising 908 pine, 613 spruce and 127 birch trees. Biomass equations were derived for the total above-ground biomass and for the individual tree components: stem wood, stem bark, living and dead branches, needles, stump, and roots, as dependent variables. Three multivariate models with different numbers of independent variables for above-ground biomass and one for below-ground biomass were constructed. Variables that are normally measured in forest inventories were used as independent variables. The simplest model formulations, multivariate models (1) were mainly based on tree diameter and height as independent variables. In more elaborated multivariate models, (2) and (3), additional commonly measured tree variables such as age, crown length, bark thickness and radial growth rate were added. Tree biomass modelling includes consecutive phases, which cause unreliability in the prediction of biomass. First, biomasses of sample trees should be determined reliably to decrease the statistical errors caused by sub-sampling. In this study, methods to improve the accuracy of stem biomass estimates of the sample trees were developed. In addition, the reliability of the method applied to estimate sample-tree crown biomass was tested, and no systematic error was detected. Second, the whole information content of data should be utilized in order to achieve reliable parameter estimates and applicable and flexible model structure. In the modelling approach, the basic assumption was that the biomasses of

  20. Tree Coding of Bilevel Images

    DEFF Research Database (Denmark)

    Martins, Bo; Forchhammer, Søren

    1998-01-01

    Presently, sequential tree coders are the best general purpose bilevel image coders and the best coders of halftoned images. The current ISO standard, Joint Bilevel Image Experts Group (JBIG), is a good example. A sequential tree coder encodes the data by feeding estimates of conditional...... probabilities to an arithmetic coder. The conditional probabilities are estimated from co-occurrence statistics of past pixels, the statistics are stored in a tree. By organizing the code length calculations properly, a vast number of possible models (trees) reflecting different pixel orderings can...... is one order of magnitude slower than JBIG, obtains excellent and highly robust compression performance. A multipass free tree coding scheme produces superior compression results for all test images. A multipass free template coding scheme produces significantly better results than JBIG for difficult...

  1. Decision trees in epidemiological research

    Directory of Open Access Journals (Sweden)

    Ashwini Venkatasubramaniam

    2017-09-01

    Full Text Available Abstract Background In many studies, it is of interest to identify population subgroups that are relatively homogeneous with respect to an outcome. The nature of these subgroups can provide insight into effect mechanisms and suggest targets for tailored interventions. However, identifying relevant subgroups can be challenging with standard statistical methods. Main text We review the literature on decision trees, a family of techniques for partitioning the population, on the basis of covariates, into distinct subgroups who share similar values of an outcome variable. We compare two decision tree methods, the popular Classification and Regression tree (CART technique and the newer Conditional Inference tree (CTree technique, assessing their performance in a simulation study and using data from the Box Lunch Study, a randomized controlled trial of a portion size intervention. Both CART and CTree identify homogeneous population subgroups and offer improved prediction accuracy relative to regression-based approaches when subgroups are truly present in the data. An important distinction between CART and CTree is that the latter uses a formal statistical hypothesis testing framework in building decision trees, which simplifies the process of identifying and interpreting the final tree model. We also introduce a novel way to visualize the subgroups defined by decision trees. Our novel graphical visualization provides a more scientifically meaningful characterization of the subgroups identified by decision trees. Conclusions Decision trees are a useful tool for identifying homogeneous subgroups defined by combinations of individual characteristics. While all decision tree techniques generate subgroups, we advocate the use of the newer CTree technique due to its simplicity and ease of interpretation.

  2. Decision trees in epidemiological research.

    Science.gov (United States)

    Venkatasubramaniam, Ashwini; Wolfson, Julian; Mitchell, Nathan; Barnes, Timothy; JaKa, Meghan; French, Simone

    2017-01-01

    In many studies, it is of interest to identify population subgroups that are relatively homogeneous with respect to an outcome. The nature of these subgroups can provide insight into effect mechanisms and suggest targets for tailored interventions. However, identifying relevant subgroups can be challenging with standard statistical methods. We review the literature on decision trees, a family of techniques for partitioning the population, on the basis of covariates, into distinct subgroups who share similar values of an outcome variable. We compare two decision tree methods, the popular Classification and Regression tree (CART) technique and the newer Conditional Inference tree (CTree) technique, assessing their performance in a simulation study and using data from the Box Lunch Study, a randomized controlled trial of a portion size intervention. Both CART and CTree identify homogeneous population subgroups and offer improved prediction accuracy relative to regression-based approaches when subgroups are truly present in the data. An important distinction between CART and CTree is that the latter uses a formal statistical hypothesis testing framework in building decision trees, which simplifies the process of identifying and interpreting the final tree model. We also introduce a novel way to visualize the subgroups defined by decision trees. Our novel graphical visualization provides a more scientifically meaningful characterization of the subgroups identified by decision trees. Decision trees are a useful tool for identifying homogeneous subgroups defined by combinations of individual characteristics. While all decision tree techniques generate subgroups, we advocate the use of the newer CTree technique due to its simplicity and ease of interpretation.

  3. Schoolyard Trees: Planning and Planting for Survival.

    Science.gov (United States)

    Coffey, Ann

    2001-01-01

    Considers factors that affect the fate of schoolyard trees and focuses on the importance of what is considered during tree selection. Includes of list of characteristics of tree projects that have a low survival rate. (DDR)

  4. The Heritage of Nature: Heritage Trees

    Directory of Open Access Journals (Sweden)

    Zöhre Polat

    2017-08-01

    Full Text Available Heritage trees are naturel heritages. Heritage trees are typically a large, individual tree with unique value, which is considered irreplaceable. The major criteria for heritage tree designation are age, rarity, and size, as well as aesthetic, botanical, ecological, and historical value. Today many researcher’s focus on recording,, protection and management strategies of heritage trees. Counties have different strategies about heritage trees. The aims of the study are; (1 Preserving the characteristics of being heritage trees, (2 Present suggestions for record, protection and management strategies of heritage trees in Turkey.

  5. Maximum Gene-Support Tree

    Directory of Open Access Journals (Sweden)

    Yunfeng Shan

    2008-01-01

    Full Text Available Genomes and genes diversify during evolution; however, it is unclear to what extent genes still retain the relationship among species. Model species for molecular phylogenetic studies include yeasts and viruses whose genomes were sequenced as well as plants that have the fossil-supported true phylogenetic trees available. In this study, we generated single gene trees of seven yeast species as well as single gene trees of nine baculovirus species using all the orthologous genes among the species compared. Homologous genes among seven known plants were used for validation of the finding. Four algorithms—maximum parsimony (MP, minimum evolution (ME, maximum likelihood (ML, and neighbor-joining (NJ—were used. Trees were reconstructed before and after weighting the DNA and protein sequence lengths among genes. Rarely a gene can always generate the “true tree” by all the four algorithms. However, the most frequent gene tree, termed “maximum gene-support tree” (MGS tree, or WMGS tree for the weighted one, in yeasts, baculoviruses, or plants was consistently found to be the “true tree” among the species. The results provide insights into the overall degree of divergence of orthologous genes of the genomes analyzed and suggest the following: 1 The true tree relationship among the species studied is still maintained by the largest group of orthologous genes; 2 There are usually more orthologous genes with higher similarities between genetically closer species than between genetically more distant ones; and 3 The maximum gene-support tree reflects the phylogenetic relationship among species in comparison.

  6. Tree Ordination as Invented Tradition

    Directory of Open Access Journals (Sweden)

    Avery Morrow

    2012-01-01

    Full Text Available The symbolic ordination of trees as monks in Thailand is widely perceived in Western scholarship to be proof of the power of Buddhism to spur ecological thought. However, a closer analysis of tree ordination demonstrates that it is not primarily about Buddhist teaching, but rather is an invented tradition based on the sanctity of Thai Buddhist symbols as well as those of spirit worship and the monarchy. Tree ordinations performed by non-Buddhist minorities in Thailand do not demonstrate a religious commitment but rather a political one.

  7. TreeCluster: Massively scalable transmission clustering using phylogenetic trees

    OpenAIRE

    Moshiri, Alexander

    2018-01-01

    Background: The ability to infer transmission clusters from molecular data is critical to designing and evaluating viral control strategies. Viral sequencing datasets are growing rapidly, but standard methods of transmission cluster inference do not scale well beyond thousands of sequences. Results: I present TreeCluster, a cross-platform tool that performs transmission cluster inference on a given phylogenetic tree orders of magnitude faster than existing inference methods and supports multi...

  8. Moose?tree interactions: rebrowsing is common across tree species

    OpenAIRE

    Mathisen, Karen Marie; Milner, Jos M.; Skarpe, Christina

    2017-01-01

    Background Plant strategies to resist herbivory include tolerance and avoidance. Tolerance strategies, such as rapid regrowth which increases the palatability of new shoots, can lead to positive feedback loops between plants and herbivores. An example of such a positive feedback occurs when moose (Alces alces) browse trees in boreal forests. We described the degree of change in tree morphology that accumulated over time in response to repeated browsing by moose, using an index of accumulated ...

  9. Random ancestor trees

    International Nuclear Information System (INIS)

    Ben-Naim, E; Krapivsky, P L

    2010-01-01

    We investigate a network growth model in which the genealogy controls the evolution. In this model, a new node selects a random target node and links either to this target node, or to its parent, or to its grandparent, etc; all nodes from the target node to its most ancient ancestor are equiprobable destinations. The emerging random ancestor tree is very shallow: the fraction g n of nodes at distance n from the root decreases super-exponentially with n, g n = e −1 /(n − 1)!. We find that a macroscopic hub at the root coexists with highly connected nodes at higher generations. The maximal degree of a node at the nth generation grows algebraically as N 1/β n , where N is the system size. We obtain the series of nontrivial exponents which are roots of transcendental equations: β 1 ≅1.351 746, β 2 ≅1.682 201, etc. As a consequence, the fraction p k of nodes with degree k has an algebraic tail, p k ∼ k −γ , with γ = β 1 + 1 = 2.351 746

  10. Resummed tree heptagon

    Science.gov (United States)

    Belitsky, A. V.

    2018-04-01

    The form factor program for the regularized space-time S-matrix in planar maximally supersymmetric gauge theory, known as the pentagon operator product expansion, is formulated in terms of flux-tube excitations propagating on a dual two-dimensional world-sheet, whose dynamics is known exactly as a function of 't Hooft coupling. Both MHV and non-MHV amplitudes are described in a uniform, systematic fashion within this framework, with the difference between the two encoded in coupling-dependent helicity form factors expressed via Zhukowski variables. The nontrivial SU(4) tensor structure of flux-tube transitions is coupling independent and is known for any number of charged excitations from solutions of a system of Watson and Mirror equations. This description allows one to resum the infinite series of form factors and recover the space-time S-matrix exactly in kinematical variables at a given order of perturbation series. Recently, this was done for the hexagon. Presently, we successfully perform resummation for the seven-leg tree NMHV amplitude. To this end, we construct the flux-tube integrands of the fifteen independent Grassmann component of the heptagon with an infinite number of small fermion-antifermion pairs accounted for in NMHV two-channel conformal blocks.

  11. Adaptability of some legume trees on quartz tailings of a former tin mining area in Bangka Island, Indonesia

    Directory of Open Access Journals (Sweden)

    B H Narendra

    2016-10-01

    Full Text Available Tin mining activities in Bangka Island, besides their important role in contributing to state revenues, also caused damage to the environment, among others in the form of quartz tailings overlay. To rehabilitate this land, in addition to the necessary efforts to improve soil conditions, success is also determined by the selection of appropriate plant species. This study was aimed to determine the adaptability of some legume trees grown on the quartz tailings in land rehabilitation trials in the post tin mining areas of Bangka Island. The legume trees tested were Calliandra calothyrsus Meisn., Caesalpinia sappan L., Enterolobium cyclocarpum (Jacq. Griseb., Gliricidia sepium (Jacq. Walp., Delonix regia ( Hook. Raf., and Cassia siamea Lamk. Treatments of growing media applied  in  the field were medium I (a mixture of 20% organic material, 20% top soil, 1% NPK fertilizer, 5% calcium, and 54% quartz tailings, media II (a mixture of 25%organic material, 25%top soil, 2% NPK fertilizer, 6% calcium, 42% quartz tailings, and media III (a mixture of 30% organic material, 30% top soil, 3% NPK fertilizer, 7% calcium, and 30% quartz tailings. The observation was done by measuring the height and diameter of the stem of the plants, as well as the viability of one year after planting. Analysis of the results of measurements of stem height and diameter showed their diversity. Enterolobium cyclocarpum had the largest dimensions, while the lowest was Caesalpinia sappan. At the age of one year in the field, Gliricida sepium and Enterolobium cyclocarpum showed the average ability of the high life of up to 100%, whereas Calliandra calothyrsus was totally death. In general, the types of legumes selected in this trial showed good adaptability, except for of Calliandra calothyrsus

  12. Distance labeling schemes for trees

    DEFF Research Database (Denmark)

    Alstrup, Stephen; Gørtz, Inge Li; Bistrup Halvorsen, Esben

    2016-01-01

    We consider distance labeling schemes for trees: given a tree with n nodes, label the nodes with binary strings such that, given the labels of any two nodes, one can determine, by looking only at the labels, the distance in the tree between the two nodes. A lower bound by Gavoille et al. [Gavoille...... variants such as, for example, small distances in trees [Alstrup et al., SODA, 2003]. We improve the known upper and lower bounds of exact distance labeling by showing that 1/4 log2(n) bits are needed and that 1/2 log2(n) bits are sufficient. We also give (1 + ε)-stretch labeling schemes using Theta...

  13. Spanning Tree Based Attribute Clustering

    DEFF Research Database (Denmark)

    Zeng, Yifeng; Jorge, Cordero Hernandez

    2009-01-01

    inconsistent edges from a maximum spanning tree by starting appropriate initial modes, therefore generating stable clusters. It discovers sound clusters through simple graph operations and achieves significant computational savings. We compare the Star Discovery algorithm against earlier attribute clustering...

  14. Decision tree modeling using R.

    Science.gov (United States)

    Zhang, Zhongheng

    2016-08-01

    In machine learning field, decision tree learner is powerful and easy to interpret. It employs recursive binary partitioning algorithm that splits the sample in partitioning variable with the strongest association with the response variable. The process continues until some stopping criteria are met. In the example I focus on conditional inference tree, which incorporates tree-structured regression models into conditional inference procedures. While growing a single tree is subject to small changes in the training data, random forests procedure is introduced to address this problem. The sources of diversity for random forests come from the random sampling and restricted set of input variables to be selected. Finally, I introduce R functions to perform model based recursive partitioning. This method incorporates recursive partitioning into conventional parametric model building.

  15. Algorithms for Decision Tree Construction

    KAUST Repository

    Chikalov, Igor

    2011-01-01

    The study of algorithms for decision tree construction was initiated in 1960s. The first algorithms are based on the separation heuristic [13, 31] that at each step tries dividing the set of objects as evenly as possible. Later Garey and Graham [28] showed that such algorithm may construct decision trees whose average depth is arbitrarily far from the minimum. Hyafil and Rivest in [35] proved NP-hardness of DT problem that is constructing a tree with the minimum average depth for a diagnostic problem over 2-valued information system and uniform probability distribution. Cox et al. in [22] showed that for a two-class problem over information system, even finding the root node attribute for an optimal tree is an NP-hard problem. © Springer-Verlag Berlin Heidelberg 2011.

  16. Generic physical protection logic trees

    Energy Technology Data Exchange (ETDEWEB)

    Paulus, W.K.

    1981-10-01

    Generic physical protection logic trees, designed for application to nuclear facilities and materials, are presented together with a method of qualitative evaluation of the trees for design and analysis of physical protection systems. One or more defense zones are defined where adversaries interact with the physical protection system. Logic trees that are needed to describe the possible scenarios within a defense zone are selected. Elements of a postulated or existing physical protection system are tagged to the primary events of the logic tree. The likelihood of adversary success in overcoming these elements is evaluated on a binary, yes/no basis. The effect of these evaluations is propagated through the logic of each tree to determine whether the adversary is likely to accomplish the end event of the tree. The physical protection system must be highly likely to overcome the adversary before he accomplishes his objective. The evaluation must be conducted for all significant states of the site. Deficiencies uncovered become inputs to redesign and further analysis, closing the loop on the design/analysis cycle.

  17. Longest Common Extensions in Trees

    DEFF Research Database (Denmark)

    Bille, Philip; Gawrychowski, Pawel; Gørtz, Inge Li

    2015-01-01

    to trees and suggest a few applications of LCE in trees to tries and XML databases. Given a labeled and rooted tree T of size n, the goal is to preprocess T into a compact data structure that support the following LCE queries between subpaths and subtrees in T. Let v1, v2, w1, and w2 be nodes of T...... such that w1 and w2 are descendants of v1 and v2 respectively. - LCEPP(v1, w1, v2, w2): (path-path LCE) return the longest common prefix of the paths v1 ~→ w1 and v2 ~→ w2. - LCEPT(v1, w1, v2): (path-tree LCE) return maximal path-path LCE of the path v1 ~→ w1 and any path from v2 to a descendant leaf. - LCETT......(v1, v2): (tree-tree LCE) return a maximal path-path LCE of any pair of paths from v1 and v2 to descendant leaves. We present the first non-trivial bounds for supporting these queries. For LCEPP queries, we present a linear-space solution with O(log* n) query time. For LCEPT queries, we present...

  18. Longest common extensions in trees

    DEFF Research Database (Denmark)

    Bille, Philip; Gawrychowski, Pawel; Gørtz, Inge Li

    2016-01-01

    to trees and suggest a few applications of LCE in trees to tries and XML databases. Given a labeled and rooted tree T of size n, the goal is to preprocess T into a compact data structure that support the following LCE queries between subpaths and subtrees in T. Let v1, v2, w1, and w2 be nodes of T...... such that w1 and w2 are descendants of v1 and v2 respectively. - LCEPP(v1, w1, v2, w2): (path-path LCE) return the longest common prefix of the paths v1 ~→ w1 and v2 ~→ w2. - LCEPT(v1, w1, v2): (path-tree LCE) return maximal path-path LCE of the path v1 ~→ w1 and any path from v2 to a descendant leaf. - LCETT......(v1, v2): (tree-tree LCE) return a maximal path-path LCE of any pair of paths from v1 and v2 to descendant leaves. We present the first non-trivial bounds for supporting these queries. For LCEPP queries, we present a linear-space solution with O(log* n) query time. For LCEPT queries, we present...

  19. Objective consensus from decision trees.

    Science.gov (United States)

    Putora, Paul Martin; Panje, Cedric M; Papachristofilou, Alexandros; Dal Pra, Alan; Hundsberger, Thomas; Plasswilm, Ludwig

    2014-12-05

    Consensus-based approaches provide an alternative to evidence-based decision making, especially in situations where high-level evidence is limited. Our aim was to demonstrate a novel source of information, objective consensus based on recommendations in decision tree format from multiple sources. Based on nine sample recommendations in decision tree format a representative analysis was performed. The most common (mode) recommendations for each eventuality (each permutation of parameters) were determined. The same procedure was applied to real clinical recommendations for primary radiotherapy for prostate cancer. Data was collected from 16 radiation oncology centres, converted into decision tree format and analyzed in order to determine the objective consensus. Based on information from multiple sources in decision tree format, treatment recommendations can be assessed for every parameter combination. An objective consensus can be determined by means of mode recommendations without compromise or confrontation among the parties. In the clinical example involving prostate cancer therapy, three parameters were used with two cut-off values each (Gleason score, PSA, T-stage) resulting in a total of 27 possible combinations per decision tree. Despite significant variations among the recommendations, a mode recommendation could be found for specific combinations of parameters. Recommendations represented as decision trees can serve as a basis for objective consensus among multiple parties.

  20. Generic physical protection logic trees

    International Nuclear Information System (INIS)

    Paulus, W.K.

    1981-10-01

    Generic physical protection logic trees, designed for application to nuclear facilities and materials, are presented together with a method of qualitative evaluation of the trees for design and analysis of physical protection systems. One or more defense zones are defined where adversaries interact with the physical protection system. Logic trees that are needed to describe the possible scenarios within a defense zone are selected. Elements of a postulated or existing physical protection system are tagged to the primary events of the logic tree. The likelihood of adversary success in overcoming these elements is evaluated on a binary, yes/no basis. The effect of these evaluations is propagated through the logic of each tree to determine whether the adversary is likely to accomplish the end event of the tree. The physical protection system must be highly likely to overcome the adversary before he accomplishes his objective. The evaluation must be conducted for all significant states of the site. Deficiencies uncovered become inputs to redesign and further analysis, closing the loop on the design/analysis cycle

  1. Microwave sensing of tree trunks

    Science.gov (United States)

    Jezova, Jana; Mertens, Laurence; Lambot, Sebastien

    2015-04-01

    The main subject of this research is the observation of the inner part of living tree trunks using ground-penetrating radar (GPR). Trees are everyday part of human life and therefore it is important to pay attention to the tree conditions. The most obvious consequence of the poor tree condition is dead or injury caused by falling tree. The trunk internal structure is divided into three main parts: heartwood, sapwood and bark, which make this medium highly anisotropic and heterogeneous. Furthermore, the properties of the wood are not only specie-dependent but also depend on genetic and on environmental conditions. In urban areas the main problem for the stability of the trees relies in the apparition of decays provoked by fungi, insect or birds. This results in cavities or decreasing of the support capacity of the tree. GPR has proved itself to be a very powerful electromagnetic tool for non-destructive detection of buried objects. Since the beginning of the 20th century it has been used in several different areas (archaeology, landmine detection, civil engineering, ...). GPR uses the principle of the scattering of the electromagnetic waves that are radiated from a transmitting antenna. Then the waves propagate through the medium and are reflected from the object and then they are received by a receiving antenna. The velocity of the scattered signal is determined primarily by the permittivity of the material. The optimal functionality of the GPR was investigated using the numerical simulation tool gprMax2D. This tool is based on a Finite-Difference Time-Domain (FDTD) numerical model. Subsequently, the GPR functionality was tested using the laboratory model of a decayed tree trunk. Afterwards, the results and lessons learnt in the simplified tests will be used in the processing of the real data and will help to achieve deeper understanding of them. The laboratory model of the tree trunk was made by plastic or carton pipes and filled by sand. Space inside the model

  2. Tight bounds for top tree compression

    DEFF Research Database (Denmark)

    Bille, Philip; Fernstrøm, Finn; Gørtz, Inge Li

    2017-01-01

    We consider compressing labeled, ordered and rooted trees using DAG compression and top tree compression. We show that there exists a family of trees such that the size of the DAG compression is always a logarithmic factor smaller than the size of the top tree compression (even for an alphabet...

  3. Factors that influence Christmas tree sales

    Science.gov (United States)

    Thomas H. Pendleton; Lawrence D. Garrett

    1970-01-01

    An analysis of the metropolitan Christmas tree market in Winston-Salem, N. C., shows that to sell more trees, Christmas tree retailers should locate their lots on heavily traveled streets in business areas, have adequate parking facilities, advertise, and have attractive displays of trees. Retailers who follow these practices can expect to receive higher prices for...

  4. Critical wind speed at which trees break

    Science.gov (United States)

    Virot, E.; Ponomarenko, A.; Dehandschoewercker, É.; Quéré, D.; Clanet, C.

    2016-02-01

    Data from storms suggest that the critical wind speed at which trees break is constant (≃42 m /s ), regardless of tree characteristics. We question the physical origin of this observation both experimentally and theoretically. By combining Hooke's law, Griffith's criterion, and tree allometry, we show that the critical wind speed indeed hardly depends on the height, diameter, and elastic properties of trees.

  5. TreeGenes: A forest tree genome database.

    Science.gov (United States)

    Wegrzyn, Jill L; Lee, Jennifer M; Tearse, Brandon R; Neale, David B

    2008-01-01

    The Dendrome Project and associated TreeGenes database serve the forest genetics research community through a curated and integrated web-based relational database. The research community is composed of approximately 2 000 members representing over 730 organizations worldwide. The database itself is composed of a wide range of genetic data from many forest trees with focused efforts on commercially important members of the Pinaceae family. The primary data types curated include species, publications, tree and DNA extraction information, genetic maps, molecular markers, ESTs, genotypic, and phenotypic data. There are currently ten main search modules or user access points within this PostgreSQL database. These access points allow users to navigate logically through the related data types. The goals of the Dendrome Project are to (1) provide a comprehensive resource for forest tree genomics data to facilitate gene discovery in related species, (2) develop interfaces that encourage the submission and integration of all genomic data, and to (3) centralize and distribute existing and novel online tools for the research community that both support and ease analysis. Recent developments have focused on increasing data content, functional annotations, data retrieval, and visualization tools. TreeGenes was developed to provide a centralized web resource with analysis and visualization tools to support data storage and exchange.

  6. A bicriterion Steiner tree problem on graph

    Directory of Open Access Journals (Sweden)

    Vujošević Mirko B.

    2003-01-01

    Full Text Available This paper presents a formulation of bicriterion Steiner tree problem which is stated as a task of finding a Steiner tree with maximal capacity and minimal length. It is considered as a lexicographic multicriteria problem. This means that the bottleneck Steiner tree problem is solved first. After that, the next optimization problem is stated as a classical minimums Steiner tree problem under the constraint on capacity of the tree. The paper also presents some computational experiments with the multicriteria problem.

  7. Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies.

    Science.gov (United States)

    Leaché, Adam D; Banbury, Barbara L; Felsenstein, Joseph; de Oca, Adrián Nieto-Montes; Stamatakis, Alexandros

    2015-11-01

    Single nucleotide polymorphisms (SNPs) are useful markers for phylogenetic studies owing in part to their ubiquity throughout the genome and ease of collection. Restriction site associated DNA sequencing (RADseq) methods are becoming increasingly popular for SNP data collection, but an assessment of the best practises for using these data in phylogenetics is lacking. We use computer simulations, and new double digest RADseq (ddRADseq) data for the lizard family Phrynosomatidae, to investigate the accuracy of RAD loci for phylogenetic inference. We compare the two primary ways RAD loci are used during phylogenetic analysis, including the analysis of full sequences (i.e., SNPs together with invariant sites), or the analysis of SNPs on their own after excluding invariant sites. We find that using full sequences rather than just SNPs is preferable from the perspectives of branch length and topological accuracy, but not of computational time. We introduce two new acquisition bias corrections for dealing with alignments composed exclusively of SNPs, a conditional likelihood method and a reconstituted DNA approach. The conditional likelihood method conditions on the presence of variable characters only (the number of invariant sites that are unsampled but known to exist is not considered), while the reconstituted DNA approach requires the user to specify the exact number of unsampled invariant sites prior to the analysis. Under simulation, branch length biases increase with the amount of missing data for both acquisition bias correction methods, but branch length accuracy is much improved in the reconstituted DNA approach compared to the conditional likelihood approach. Phylogenetic analyses of the empirical data using concatenation or a coalescent-based species tree approach provide strong support for many of the accepted relationships among phrynosomatid lizards, suggesting that RAD loci contain useful phylogenetic signal across a range of divergence times despite the

  8. Eficiencia de tres atrayentes alimenticios para la captura de Rhagoletis zoqui Bush, 1966 (Díptera: Tephritidae) y caracterización del sistema de producción del nogal de castilla (Juglans regia L.) en la Sierra Nevada de Puebla.

    OpenAIRE

    Aparicio del Moral, Yahana Michelle

    2014-01-01

    La mosca de la fruta Rhagoletis zoqui Bush, 1966 (Diptera: Tephritidae), es un insecto plaga asociado al nogal de Castilla (Juglans regia L.) que ocasiona pérdidas a los productores nogaleros en la Sierra Nevada de Puebla. En los últimos años se han incrementado las poblaciones de este insecto provocando daños importantes al fruto. No se dispone de información científica sobre los aspectos básicos para el control de este insecto en la región. En este trabajo, se evaluaron 3 atrayentes alimen...

  9. Alegoría, emblemática y doctrina cristiana en un convento de clausura aragonés del siglo XVII: un programa pictórico inspirado en la Regia Via Crucis de Benedictus van Haeften

    Directory of Open Access Journals (Sweden)

    Azanza López, José Javier

    2003-06-01

    Full Text Available In the cloister of the convent of the Purísima Concepción y San Blas in Miedes (Zaragoza there are eight paintings dating from the last quarter of the seventeenth century, in all probability created by an Aragonese artist who was not unfamiliar with painting at Court. The importance of these works rests not only on their pictorial quality but on their unified iconography, in which doctrine imbued with baroque spirituality is directed to the nuns of the religious community. The source can be found in Benedictus Van Haeften's Regia Via Crucis, one of the most significant seventeenth-century doctrinal works. The eight prints chosen as models for the canvases constitute a perfect synthesis of the doctrine contained in the Regia Via Crucis, within the context of a female convent in which a cross given by the Virgin to the mother of sister Inés de Jesús y Franco was preserved as a precious relic and had effected miraculous healings.

    El convento de la Purísima Concepción y San Blas de Miedes (Zaragoza conserva en su claustro ocho lienzos del último cuarto del siglo XVII, ejecutados con casi toda probabilidad por un pintor de la estimable escuela aragonesa al que no resulta ajeno el conocimiento de la pintura de la Corte. Mas el interés de los lienzos no reside tan sólo en su calidad pictórica; el conjunto compone además un programa iconográfico unitario y desarrolla una interesante catcquesis muy propia de la espiritualidad barroca dirigida a las monjas de la comunidad religiosa. El punto de partida de todo ello se encuentra en una de las obras doctrinales más importantes del siglo XVII: la Regia Via Crucis, de Benedictus Van Haeften, cuyos grabados inspiran los lienzos del convento aragonés. Las ocho estampas escogidas para plasmar en lienzo constituyen una síntesis perfecta de la doctrina contenida en la Regia Via Crucis, en el marco de una clausura femenina que conservaba como preciada

  10. Utilization of nitrogen fixing trees

    Energy Technology Data Exchange (ETDEWEB)

    Brewbaker, J.L.; Beldt, R. van den; MacDicken, K.; Budowski, G.; Kass, D.C.L.; Russo, R.O.; Escalante, G.; Herrera, R.; Aranguren, J.; Arkcoll, D.B.; Doebereinger, J. (cord.)

    1983-01-01

    Six papers from the symposium are noted. Brewbaker, J.L., Beldt, R. van den, MacDicken, K. Fuelwood uses and properties of nitrogen-fixing trees, pp 193-204, (Refs. 15). Includes a list of 35 nitrogen-fixing trees of high fuelwood value. Budowski, G.; Kass, D.C.L.; Russo, R.O. Leguminous trees for shade, pp 205-222, (Refs. 68). Escalante, G., Herrera, R., Aranguren, J.; Nitrogen fixation in shade trees (Erythrina poeppigiana) in cocoa plantations in northern Venezuela, pp 223-230, (Refs. 13). Arkcoll, D.B.; Some leguminous trees providing useful fruits in the North of Brazil, pp 235-239, (Refs. 13). This paper deals with Parkia platycephala, Pentaclethra macroloba, Swartzia sp., Cassia leiandra, Hymenaea courbaril, dipteryz odorata, Inga edulis, I. macrophylla, and I. cinnamonea. Baggio, A.J.; Possibilities of the use of Gliricidia sepium in agroforestry systems in Brazil, pp 241-243; (Refs. 15). Seiffert, N.F.; Biological nitrogen and protein production of Leucaena cultivars grown to supplement the nutrition of ruminants, pp 245-249, (Refs. 14). Leucaena leucocephala cv. Peru, L. campina grande (L. leucocephala), and L. cunningham (L. leucocephalae) were promising for use as browse by beef cattle in central Brazil.

  11. Impact of root growth and root hydraulic conductance on water availability of young walnut trees

    Science.gov (United States)

    Jerszurki, Daniela; Couvreur, Valentin; Hopmans, Jan W.; Silva, Lucas C. R.; Shackel, Kenneth A.; de Souza, Jorge L. M.

    2015-04-01

    Walnut (Juglans regia L.) is a tree species of high economic importance in the Central Valley of California. This crop has particularly high water requirements, which makes it highly dependent on irrigation. The context of decreasing water availability in the state calls for efficient water management practices, which requires improving our understanding of the relationship between water application and walnut water availability. In addition to the soil's hydraulic conductivity, two plant properties are thought to control the supply of water from the bulk soil to the canopy: (i) root distribution and (ii) plant hydraulic conductance. Even though these properties are clearly linked to crop water requirements, their quantitative relation remains unclear. The aim of this study is to quantitatively explain walnut water requirements under water deficit from continuous measurements of its water consumption, soil and stem water potential, root growth and root system hydraulic conductance. For that purpose, a greenhouse experiment was conducted for a two month period. Young walnut trees were planted in transparent cylindrical pots, equipped with: (i) rhizotron tubes, which allowed for non-invasive monitoring of root growth, (ii) pressure transducer tensiometers for soil water potential, (iii) psychrometers attached to non-transpiring leaves for stem water potential, and (iv) weighing scales for plant transpiration. Treatments consisted of different irrigation rates: 100%, 75% and 50% of potential crop evapotranspiration. Plant responses were compared to predictions from three simple process-based soil-plant-atmosphere models of water flow: (i) a hydraulic model of stomatal regulation based on stem water potential and vapor pressure deficit, (ii) a model of plant hydraulics predicting stem water potential from soil-root interfaces water potential, and (iii) a model of soil water depletion predicting the water potential drop between the bulk soil and soil-root interfaces

  12. Totally optimal decision trees for Boolean functions

    KAUST Repository

    Chikalov, Igor

    2016-07-28

    We study decision trees which are totally optimal relative to different sets of complexity parameters for Boolean functions. A totally optimal tree is an optimal tree relative to each parameter from the set simultaneously. We consider the parameters characterizing both time (in the worst- and average-case) and space complexity of decision trees, i.e., depth, total path length (average depth), and number of nodes. We have created tools based on extensions of dynamic programming to study totally optimal trees. These tools are applicable to both exact and approximate decision trees, and allow us to make multi-stage optimization of decision trees relative to different parameters and to count the number of optimal trees. Based on the experimental results we have formulated the following hypotheses (and subsequently proved): for almost all Boolean functions there exist totally optimal decision trees (i) relative to the depth and number of nodes, and (ii) relative to the depth and average depth.

  13. Mapping tree density at a global scale.

    Science.gov (United States)

    Crowther, T W; Glick, H B; Covey, K R; Bettigole, C; Maynard, D S; Thomas, S M; Smith, J R; Hintler, G; Duguid, M C; Amatulli, G; Tuanmu, M-N; Jetz, W; Salas, C; Stam, C; Piotto, D; Tavani, R; Green, S; Bruce, G; Williams, S J; Wiser, S K; Huber, M O; Hengeveld, G M; Nabuurs, G-J; Tikhonova, E; Borchardt, P; Li, C-F; Powrie, L W; Fischer, M; Hemp, A; Homeier, J; Cho, P; Vibrans, A C; Umunay, P M; Piao, S L; Rowe, C W; Ashton, M S; Crane, P R; Bradford, M A

    2015-09-10

    The global extent and distribution of forest trees is central to our understanding of the terrestrial biosphere. We provide the first spatially continuous map of forest tree density at a global scale. This map reveals that the global number of trees is approximately 3.04 trillion, an order of magnitude higher than the previous estimate. Of these trees, approximately 1.39 trillion exist in tropical and subtropical forests, with 0.74 trillion in boreal regions and 0.61 trillion in temperate regions. Biome-level trends in tree density demonstrate the importance of climate and topography in controlling local tree densities at finer scales, as well as the overwhelming effect of humans across most of the world. Based on our projected tree densities, we estimate that over 15 billion trees are cut down each year, and the global number of trees has fallen by approximately 46% since the start of human civilization.

  14. Drawing Contour Trees in the Plane.

    Science.gov (United States)

    Heine, C; Schneider, D; Carr, Hamish; Scheuermann, G

    2011-11-01

    The contour tree compactly describes scalar field topology. From the viewpoint of graph drawing, it is a tree with attributes at vertices and optionally on edges. Standard tree drawing algorithms emphasize structural properties of the tree and neglect the attributes. Applying known techniques to convey this information proves hard and sometimes even impossible. We present several adaptions of popular graph drawing approaches to the problem of contour tree drawing and evaluate them. We identify five esthetic criteria for drawing contour trees and present a novel algorithm for drawing contour trees in the plane that satisfies four of these criteria. Our implementation is fast and effective for contour tree sizes usually used in interactive systems (around 100 branches) and also produces readable pictures for larger trees, as is shown for an 800 branch example.

  15. Integrated fault tree development environment

    International Nuclear Information System (INIS)

    Dixon, B.W.

    1986-01-01

    Probabilistic Risk Assessment (PRA) techniques are utilized in the nuclear industry to perform safety analyses of complex defense-in-depth systems. A major effort in PRA development is fault tree construction. The Integrated Fault Tree Environment (IFTREE) is an interactive, graphics-based tool for fault tree design. IFTREE provides integrated building, editing, and analysis features on a personal workstation. The design philosophy of IFTREE is presented, and the interface is described. IFTREE utilizes a unique rule-based solution algorithm founded in artificial intelligence (AI) techniques. The impact of the AI approach on the program design is stressed. IFTREE has been developed to handle the design and maintenance of full-size living PRAs and is currently in use

  16. Construction of an α-labeled tree from a given set of α-labeled trees

    Directory of Open Access Journals (Sweden)

    G. Sethuraman

    2017-08-01

    Full Text Available Inspired by the method of Koh et al. (1979 of combining known graceful trees to construct bigger graceful trees, a new class of graceful trees is constructed from a set of k known graceful trees, k≥2 in a specific way. In fact, each member of this new class of trees admits α-labeling, a stronger version of graceful labeling. Consequently, each member of this family of trees decomposes complete graphs and complete bipartite graphs.

  17. The tree gangs of Glittertown

    International Nuclear Information System (INIS)

    Boerner-Ein, D.

    1991-01-01

    This article describes the activities of four groups in Los Angeles as part of The Global ReLeaf challenge to plant trees for environmental improvement and to combat global warming. The activities include: training of 'citizen foresters' in selection of tree species, planting sites, maintenance, and fund-raising; education of school children about recycling, organic gardening, water conservation and composting. By working with civic groups, school children, public works, housing developers and the forestry division these groups hope to cool their communities and reduce energy consumption

  18. A Distributed Spanning Tree Algorithm

    DEFF Research Database (Denmark)

    Johansen, Karl Erik; Jørgensen, Ulla Lundin; Nielsen, Sven Hauge

    We present a distributed algorithm for constructing a spanning tree for connected undirected graphs. Nodes correspond to processors and edges correspond to two-way channels. Each processor has initially a distinct identity and all processors perform the same algorithm. Computation as well...... as communication is asynchronous. The total number of messages sent during a construction of a spanning tree is at most 2E+3NlogN. The maximal message size is loglogN+log(maxid)+3, where maxid is the maximal processor identity....

  19. A distributed spanning tree algorithm

    DEFF Research Database (Denmark)

    Johansen, Karl Erik; Jørgensen, Ulla Lundin; Nielsen, Svend Hauge

    1988-01-01

    We present a distributed algorithm for constructing a spanning tree for connected undirected graphs. Nodes correspond to processors and edges correspond to two way channels. Each processor has initially a distinct identity and all processors perform the same algorithm. Computation as well...... as communication is asyncronous. The total number of messages sent during a construction of a spanning tree is at most 2E+3NlogN. The maximal message size is loglogN+log(maxid)+3, where maxid is the maximal processor identity....

  20. Interpreting CNNs via Decision Trees

    OpenAIRE

    Zhang, Quanshi; Yang, Yu; Wu, Ying Nian; Zhu, Song-Chun

    2018-01-01

    This paper presents a method to learn a decision tree to quantitatively explain the logic of each prediction of a pre-trained convolutional neural networks (CNNs). Our method boosts the following two aspects of network interpretability. 1) In the CNN, each filter in a high conv-layer must represent a specific object part, instead of describing mixed patterns without clear meanings. 2) People can explain each specific prediction made by the CNN at the semantic level using a decision tree, i.e....

  1. Tree size comparison of some important street trees growing at ...

    African Journals Online (AJOL)

    The importance of trees in urban environment is now widely recognized as they cleanse the particulate air pollution and help to make cities and towns more agreeable places to dwell upon. A detailed survey was conducted to study the size of Alstonia scholaris, Azadirachta indica, Bombax ceiba, Cassia fistula, Eucalyptus ...

  2. Water Transport in Trees--An Artificial Laboratory Tree

    Science.gov (United States)

    Susman, K.; Razpet, N.; Cepic, M.

    2011-01-01

    Water transport in tall trees is an everyday phenomenon, seldom noticed and not completely understood even by scientists. As a topic of current research in plant physiology it has several advantages for presentation within school physics lectures: it is interdisciplinary and clearly shows the connection between physics and biology; the…

  3. Tree Height Calculator: An Android App for Estimating Tree Height

    Science.gov (United States)

    Burca, V. S.; Htet, N. M.; Huang, X.; de Lanerolle, T. R.; Morelli, R.; Gourley, J. R.

    2011-12-01

    Conventionally, measuring tree height requires a collection of different tools - clinometer, transit, pencil, paper, laptop computer. Results are recorded manually and entered into a spreadsheet or database for future calculation and analysis. Tree Height Calculator is a mobile Android app the integrates the various steps in this process thereby improving the accuracy and dramatically reducing the time required to go from taking measurements to analyzing data. Given the user's height and the distance from the base of the tree (which can be downloaded into the app from a server), the app uses the phone's orientation sensor to calculate the angle of elevation. A simple trigonometric formula is then used to calculate and record the tree's height in the phone's database. When the phone has a WiFi connection, the data are transmitted to a server, from where they can be downloaded directly into a spreadsheet. The application was first tested in an Environmental Science laboratory at Trinity College. On the first trial, 103 data samples were collected, stored, and uploaded to the online database with only couple of dropped data points. On the second trial, 98 data samples were gathered with no loss of data. The app combined the individual measurements taken by the students in the lab, reducing the time required to produce a graph of the class's results from days to hours.

  4. Usefulness of problem tree, objective tree and logical framework ...

    African Journals Online (AJOL)

    The discussion has led to the conclusion that higher learning institutions are not adequately preparing graduates to face the increasing labor market demands in terms of skills and competitiveness. Having outlined the roots of the problem through the problem tree, the researchers proposed potential strategies to handle the ...

  5. Human action analysis with randomized trees

    CERN Document Server

    Yu, Gang; Liu, Zicheng

    2014-01-01

    This book will provide a comprehensive overview on human action analysis with randomized trees. It will cover both the supervised random trees and the unsupervised random trees. When there are sufficient amount of labeled data available, supervised random trees provides a fast method for space-time interest point matching. When labeled data is minimal as in the case of example-based action search, unsupervised random trees is used to leverage the unlabelled data. We describe how the randomized trees can be used for action classification, action detection, action search, and action prediction.

  6. Integrating cyber attacks within fault trees

    International Nuclear Information System (INIS)

    Nai Fovino, Igor; Masera, Marcelo; De Cian, Alessio

    2009-01-01

    In this paper, a new method for quantitative security risk assessment of complex systems is presented, combining fault-tree analysis, traditionally used in reliability analysis, with the recently introduced Attack-tree analysis, proposed for the study of malicious attack patterns. The combined use of fault trees and attack trees helps the analyst to effectively face the security challenges posed by the introduction of modern ICT technologies in the control systems of critical infrastructures. The proposed approach allows considering the interaction of malicious deliberate acts with random failures. Formal definitions of fault tree and attack tree are provided and a mathematical model for the calculation of system fault probabilities is presented.

  7. Edge-Disjoint Fibonacci Trees in Hypercube

    Directory of Open Access Journals (Sweden)

    Indhumathi Raman

    2014-01-01

    Full Text Available The Fibonacci tree is a rooted binary tree whose number of vertices admit a recursive definition similar to the Fibonacci numbers. In this paper, we prove that a hypercube of dimension h admits two edge-disjoint Fibonacci trees of height h, two edge-disjoint Fibonacci trees of height h-2, two edge-disjoint Fibonacci trees of height h-4 and so on, as subgraphs. The result shows that an algorithm with Fibonacci trees as underlying data structure can be implemented concurrently on a hypercube network with no communication latency.

  8. Evaluación del potencial genotóxico del D-004, para inducir aberraciones cromosómicas en médula ósea de ratones

    OpenAIRE

    Ariadne Gutiérrez Martínez; Rafael Gámez Menéndez; Daniel Francisco Arencibia Arrebola; Balia Pardo Acosta; Haydeé García Cambián

    2010-01-01

    El D-004 es un extracto lipídico de los frutos de la palma real (Roystonea regia) que contiene una mezcla reproducible de ácidos grasos, principalmente de los ácidos oleico, palmítico, laurico y mirístico. El tratamiento oral con D-004 previene significativamente la hiperplasia prostática inducida por testosterona en roedores. Como parte de la evaluación toxicológica del D-004, este estudió investigó el potencial genotóxico del D-004 para producir aberraciones cromosómicas en ratones luego d...

  9. TreePOD: Sensitivity-Aware Selection of Pareto-Optimal Decision Trees.

    Science.gov (United States)

    Muhlbacher, Thomas; Linhardt, Lorenz; Moller, Torsten; Piringer, Harald

    2018-01-01

    Balancing accuracy gains with other objectives such as interpretability is a key challenge when building decision trees. However, this process is difficult to automate because it involves know-how about the domain as well as the purpose of the model. This paper presents TreePOD, a new approach for sensitivity-aware model selection along trade-offs. TreePOD is based on exploring a large set of candidate trees generated by sampling the parameters of tree construction algorithms. Based on this set, visualizations of quantitative and qualitative tree aspects provide a comprehensive overview of possible tree characteristics. Along trade-offs between two objectives, TreePOD provides efficient selection guidance by focusing on Pareto-optimal tree candidates. TreePOD also conveys the sensitivities of tree characteristics on variations of selected parameters by extending the tree generation process with a full-factorial sampling. We demonstrate how TreePOD supports a variety of tasks involved in decision tree selection and describe its integration in a holistic workflow for building and selecting decision trees. For evaluation, we illustrate a case study for predicting critical power grid states, and we report qualitative feedback from domain experts in the energy sector. This feedback suggests that TreePOD enables users with and without statistical background a confident and efficient identification of suitable decision trees.

  10. Mycotoxins in edible tree nuts.

    Science.gov (United States)

    Molyneux, Russell J; Mahoney, Noreen; Kim, Jong H; Campbell, Bruce C

    2007-10-20

    Tree nuts (almonds, pistachios, and walnuts) are an exceptionally valuable crop, especially in California, with an aggregate value approaching $3.5 billion. Much of this economic value comes from overseas markets, with up to 60% of the crop being exported. The product can be contaminated with aflatoxins or ochratoxins, with the former being of special concern because of the strict regulatory levels (4 ppb total aflatoxins) applied by the European Community (EC). Natural, consumer-acceptable control methods are therefore required to conform to such limits. Research has shown that aflatoxin production is markedly decreased by the presence of natural antioxidants that occur in tree nuts, including hydrolysable tannins, flavonoids and phenolic acids. In vitro testing of individual compounds showed that the antiaflatoxigenic effect correlated with the structure and concentration of such compounds in individual nut varieties and species. This lead to the hypothesis that aflatoxin biosynthesis is stimulated by oxidative stress on the fungus and that compounds capable of relieving oxidative stress should therefore suppress or eliminate aflatoxin biosynthesis. Oxidative stress induced in A. flavus by addition of tert-butyl hydroperoxide to the media stimulated peak aflatoxin production and maintained high levels over time. However, aflatoxin formation was significantly inhibited by incorporation into the media of the antioxidant, tannic acid. Measures to increase natural products with antioxidant properties in tree nuts may thereby reduce or eliminate the ability of A. flavus to biosynthesize aflatoxins, thus ensuring levels at or below regulatory limits and maintaining export markets for U.S. tree nuts.

  11. Reclamation with trees in Illinois

    Science.gov (United States)

    Brad Evilsizer

    1980-01-01

    Thru private initiative, Illinois citizens historically have invented and conducted large-scale tree planting programs, starting with hedgerow fences and farmstead windbreaks and continuing with surface mine reclamation and farm woodlands. With invaluable help from public and private scientific personnel, the old and new programs hold promise of enlargement and...

  12. Trees of Our National Forests.

    Science.gov (United States)

    Forest Service (USDA), Washington, DC.

    Presented is a description of the creation of the National Forests system, how trees grow, managing the National Forests, types of management systems, and managing for multiple use, including wildlife, water, recreation and other uses. Included are: (1) photographs; (2) line drawings of typical leaves, cones, flowers, and seeds; and (3)…

  13. Protected Vertices in Motzkin trees

    OpenAIRE

    Van Duzer, Anthony

    2017-01-01

    In this paper we find recurrence relations for the asymptotic probability a vertex is $k$ protected in all Motzkin trees. We use a similar technique to calculate the probabilities for balanced vertices of rank $k$. From this we calculate upper and lower bounds for the probability a vertex is balanced and upper and lower bounds for the expected rank of balanced vertices.

  14. storey and canopy tree species

    African Journals Online (AJOL)

    different tree species. The data presented here would therefore help in the planning and management of tropical forest reserves and development of management inteiventions to enhance forest productivity and ecological balance. Materials and methods. Study site. Kalinzu Forest Reserve is a tropical rain forest locate<.! in.

  15. Tree value conversion standards revisited

    Science.gov (United States)

    Paul S. DeBald; Martin E. Dale; Martin E. Dale

    1991-01-01

    Updated tree value conversion standards (TVCS) are presented for 12 important hardwood species of the oak-hickory forest. These updated standards-developed for each species by butt-log grade, merchantable height, and diameter at breast height-reflect the changes in lumber prices and in conversion costs which have occurred since 1976 when the original TVCS were...

  16. Trends in game tree search

    NARCIS (Netherlands)

    A. de Bruin (Arie); W.H.L.M. Pijls (Wim)

    2003-01-01

    textabstractThis paper deals with algorithms searching trees generated by two-person, zero-sum games with perfect information. The standard algorithm in this field is alpha-beta. We will discuss this algorithm as well as extensions, like transposition tables, iterative deepening and NegaScout.

  17. Tree improvement and environmental forestry

    Science.gov (United States)

    Warren T. Doolittle

    1971-01-01

    I was invited to talk to you about some of the things tree improvement can do to help our forest environment. Now I do not claim to have a corner on the market for ideas that geneticists can use in our environment, and I know that a number of scholarly papers have been presented previously on this subject.

  18. The Tree of Animal Life

    Science.gov (United States)

    Braude, Stan

    2007-01-01

    In this article, the author describes a short activity which introduces third- to fifth-grade students to animal classification. The Tree of Animal Life activity is a simple, sorting exercise that can help them see a bigger picture. The activity sets the stage for learning about animal taxonomy and introduces the characteristics of various animal…

  19. Linguistics, Logic, and Finite Trees

    NARCIS (Netherlands)

    Blackburn, P.; Meyer-Viol, W.

    1993-01-01

    A modal logic is developed to deal with finite ordered binary trees as they are used in (computational) linguistics. A modal language is introduced with operators for the 'mother of', 'first daughter of' and 'second daughter of' relations together with their transitive reflexive closures.

  20. Are there tides within trees?

    Science.gov (United States)

    Fisahn, Joachim

    2018-01-24

    Tree stem diameters and electrical stem potentials exhibit rhythmic variations with periodicities of 24-25 h. Under free-running conditions of constant light or darkness these rhythms were suggested to be mediated by the lunisolar gravitational force. To further unravel the regulation of tree stem diameter dilatations, many of the published time courses of diameter variations were re-evaluated in conjunction with the contemporaneous time courses of the lunisolar tidal acceleration. This was accomplished by application of the Etide program, which estimates, with high temporal resolution, local gravitational changes as a consequence of the diurnal variations of the lunisolar gravitational force due to the orbits and relative positions of Earth, Moon and Sun. In all instances investigated, it was evident that a synchronism exists between the times of the turning points of both the lunisolar tide and stem diameter variations when the direction of extension changes. This finding of synchrony documents that the lunisolar tide is a regulator of the tree stem diameter dilatations. Under the described experimental conditions, rhythms in tree stem diameter dilations and electrical stem potentials are controlled by the lunisolar gravitational acceleration. © The Author(s) 2018. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  1. GumTree: Data reduction

    International Nuclear Information System (INIS)

    Rayner, Hugh; Hathaway, Paul; Hauser, Nick; Fei, Yang; Franceschini, Ferdi; Lam, Tony

    2006-01-01

    Access to software tools for interactive data reduction, visualisation and analysis during a neutron scattering experiment enables instrument users to make informed decisions regarding the direction and success of their experiment. ANSTO aims to enhance the experiment experience of its facility's users by integrating these data reduction tools with the instrument control interface for immediate feedback. GumTree is a software framework and application designed to support an Integrated Scientific Experimental Environment, for concurrent access to instrument control, data acquisition, visualisation and analysis software. The Data Reduction and Analysis (DRA) module is a component of the GumTree framework that allows users to perform data reduction, correction and basic analysis within GumTree while an experiment is running. It is highly integrated with GumTree, able to pull experiment data and metadata directly from the instrument control and data acquisition components. The DRA itself uses components common to all instruments at the facility, providing a consistent interface. It features familiar ISAW-based 1D and 2D plotting, an OpenGL-based 3D plotter and peak fitting performed by fityk. This paper covers the benefits of integration, the flexibility of the DRA module, ease of use for the interface and audit trail generation

  2. Ecology: Drought and dead trees

    Science.gov (United States)

    Richard Birdsey; Yude. Pan

    2011-01-01

    Drought has emerged as a major threat to the world's forests. A study shows that tree mortality in Canada's boreal forests has increased by nearly 5% per year—much higher than expected—owing to water stress from regional warming.

  3. Ice Nuclei from Birch Trees

    Science.gov (United States)

    Felgitsch, Laura; Seifried, Teresa; Winkler, Philipp; Schmale, David, III; Grothe, Hinrich

    2017-04-01

    While the importance of heterogeneous ice nucleation in the atmosphere is known, we still know very little about the substances triggering these freezing events. Recent findings support the theory that biological ice nuclei (IN) exhibit the ability to play an important role in these processes. Huffman et al. (2013) showed a burst of biological IN over woodlands triggered by rain events. Birch pollen are known to release a high number of efficient IN if incubated in water (Pummer et al. 2012). Therefore birches are of interest in our research on this topic. Plants native to the timberline, such as birch trees, have to cope with very cold climatic conditions, rendering freezing avoidance impossible. These plants trigger freezing in their extracellular spaces to control the freezing process and avoid intracellular freezing, which would have lethal consequences. The plants hereby try to freeze at a temperature well above homogeneous freezing temperatures but still at temperatures low enough to not be effected by brief night frosts. To achieve this, IN are an important tool. The specific objective of our work was to study the potential sources and distribution of IN in birch trees. We collected leaves, fruit, bark, and trunk cores from a series of mature birch trees in Tyrol, Austria at different altitudes and sampling sites. We also collected samples from a birch tree in an urban park in Vienna, Austria. Our data show a sampling site dependence and the distribution of IN throughout the tree. Our data suggest that leaves, bark, and wood of birch can function as a source of IN, which are easily extracted with water. The IN are therefore not restricted to pollen. Hence, the amount of IN, which can be released from birch trees, is tremendous and has been underrated so far. Future work aims to elucidate the nature, contribution, and potential ecological roles of IN from birch trees in different habitats. Huffman, J.A., Prenni, A.J., DeMott, P.J., Pöhlker, C., Mason, R

  4. Tree rings and radiocarbon calibration

    International Nuclear Information System (INIS)

    Barbetti, M.

    1999-01-01

    Only a few kinds of trees in Australia and Southeast Asia are known to have growth rings that are both distinct and annual. Those that do are therefore extremely important to climatic and isotope studies. In western Tasmania, extensive work with Huon pine (Lagarostrobos franklinii) has shown that many living trees are more than 1,000 years old, and that their ring widths are sensitive to temperature, rainfall and cloud cover (Buckley et al. 1997). At the Stanley River there is a forest of living (and recently felled) trees which we have sampled and measured. There are also thousands of subfossil Huon pine logs, buried at depths less than 5 metres in an area of floodplain extending over a distance of more than a kilometre with a width of tens of metres. Some of these logs have been buried for 50,000 years or more, but most of them belong to the period between 15,000 years and the present. In previous expeditions in the 1980s and 1990s, we excavated and sampled about 350 logs (Barbetti et al. 1995; Nanson et al. 1995). By measuring the ring-width patterns, and matching them between logs and living trees, we have constructed a tree-ring dated chronology from 571 BC to AD 1992. We have also built a 4254-ring floating chronology (placed by radiocarbon at ca. 3580 to 7830 years ago), and an earlier 1268-ring chronology (ca. 7,580 to 8,850 years ago). There are many individuals, or pairs of logs which match and together span several centuries, at 9,000 years ago and beyond

  5. International Tree Ring Data Bank (ITRDB)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives. Data include raw treering measurements (most are...

  6. Understanding search trees via statistical physics

    Indian Academy of Sciences (India)

    ary search tree model (where stands for the number of branches of the search tree), an important problem for data storage in computer science, using a variety of statistical physics techniques that allow us to obtain exact asymptotic results.

  7. Animals and trees: food for thought

    Energy Technology Data Exchange (ETDEWEB)

    Openshaw, K.

    1979-01-01

    In many areas of Africa, combining tree-growing with animal rearing is advantageous, as the trees provide shade, animal fodder and timber for fuel and building, while grazing animals reduce the fire hazard from ground vegetation and improve soil fertility through droppings. Acacia albida, Prosopis cineraria, P. chilensis, leucaena leucocephala and Ailanthus excelsa are discussed as promising fodder trees, and an appendix is included with notes on 21 other trees for fodder or the production of medicines.

  8. Africa's highest mountain harbours Africa's tallest trees

    OpenAIRE

    Hemp Andreas; Zimmermann Reiner; Remmele Sabine; Pommer Ulf; Berauer Bernd; Hemp Claudia; Fischer Markus

    2017-01-01

    While world records of tree heights were set by American, Australian and Asian tree species, Africa seemed to play no role here. In our study we show that Entandrophragma excelsum (Meliaceae) found in a remote valley at Kilimanjaro has to be included in the list of the world’s superlative trees. Estimating tree age from growth rates monitored by high resolution dendrometry indicates that tall individuals may reach more than 470 years of age. A unique combination of anatomical peculiarities an...

  9. Old trees: Extraction, Conservation Can Coexist

    OpenAIRE

    Aerts, Raf

    2013-01-01

    Letters Because large old trees are essential for forest ecosystem integrity and biodiversity, timber extraction in managed forests should preferentially be concentrated where large old trees are least likely to develop ("Global decline in large old trees," D. B. Lindenmayer et al., Perspectives, 7 December 2012, p. 1305). However, timber extraction and the conservation of large old trees are not necessarily mutually exclusive. Current forest policy and management practices in Flanders...

  10. A Durable Flash Memory Search Tree

    OpenAIRE

    Clay III, James; Wortman, Kevin

    2012-01-01

    We consider the task of optimizing the B-tree data structure, used extensively in operating systems and databases, for sustainable usage on multi-level flash memory. Empirical evidence shows that this new flash memory tree, or FM Tree, extends the operational lifespan of each block of flash memory by a factor of roughly 27 to 70 times, while still supporting logarithmic-time search tree operations.

  11. Using tree diversity to compare phylogenetic heuristics.

    Science.gov (United States)

    Sul, Seung-Jin; Matthews, Suzanne; Williams, Tiffani L

    2009-04-29

    Evolutionary trees are family trees that represent the relationships between a group of organisms. Phylogenetic heuristics are used to search stochastically for the best-scoring trees in tree space. Given that better tree scores are believed to be better approximations of the true phylogeny, traditional evaluation techniques have used tree scores to determine the heuristics that find the best scores in the fastest time. We develop new techniques to evaluate phylogenetic heuristics based on both tree scores and topologies to compare Pauprat and Rec-I-DCM3, two popular Maximum Parsimony search algorithms. Our results show that although Pauprat and Rec-I-DCM3 find the trees with the same best scores, topologically these trees are quite different. Furthermore, the Rec-I-DCM3 trees cluster distinctly from the Pauprat trees. In addition to our heatmap visualizations of using parsimony scores and the Robinson-Foulds distance to compare best-scoring trees found by the two heuristics, we also develop entropy-based methods to show the diversity of the trees found. Overall, Pauprat identifies more diverse trees than Rec-I-DCM3. Overall, our work shows that there is value to comparing heuristics beyond the parsimony scores that they find. Pauprat is a slower heuristic than Rec-I-DCM3. However, our work shows that there is tremendous value in using Pauprat to reconstruct trees-especially since it finds identical scoring but topologically distinct trees. Hence, instead of discounting Pauprat, effort should go in improving its implementation. Ultimately, improved performance measures lead to better phylogenetic heuristics and will result in better approximations of the true evolutionary history of the organisms of interest.

  12. A Multipurpose Tree for Puerto Rico

    Science.gov (United States)

    Martin Chudnoff; C. B. Briscoe

    1965-01-01

    Cadam (Anthocaephalus cadamba Miq.) grows very rapidly on a wide variety of sited in Puerto Rico. Tree form is excellent, seed is produced in abundance every year by mature trees, planting is easy and cheap, and relatively little care is required after planting. No important attacks of insects of disease have occurred on trees grown in Puerto Rico for 35 years. The...

  13. A practical alternative to single tree selection?

    Science.gov (United States)

    Gary W. Miller; H. Clay Smith

    1993-01-01

    When landowners want to develop and maintain an uneven-aged tree structure in eastern hardwood stands, single-tree selection often is suggested as the only advisable, long-term partial regeneration harvest method. Single-tree selection is preferred because it provides a means for improving quality and controlling stocking of the residual stand necessary for sustained...

  14. Street tree structural differences and associated stormwater ...

    Science.gov (United States)

    Green infrastructure approaches leverage vegetation and soil to improve environmental quality. Municipal street trees are crucial components of urban green infrastructure because they provide stormwater interception benefits and other ecosystem services. Thus, it is important to understand the patterns and drivers of structural heterogeneity in urban street tree assemblages. In this study, we compared the forest structure of street trees across nine communities along both geographic and demographic gradients in metropolitan Cincinnati, Ohio, USA. Specifically, we used a two-part statistical model to compare both the proportion of sampled street segments containing zero trees, and basal area magnitude for street segments with trees. We made community-scale comparisons based on street tree management, socioeconomics, and geographic setting. Then, using modeled stormwater interception estimates from i-Tree Streets, we investigated the implications of heterogeneity in street tree assemblages for stormwater interception benefits. The forest structure of street trees varied across communities in relation to management practices, namely participation in the Tree City USA program. As a consequence of this structural difference, we observed a stark discrepancy in estimated stormwater interception between Tree City USA participants (128.7 m3/km street length) and non-participants (59.2 m3/km street length). While street tree assemblages did not vary by community poverty s

  15. New tree puller increases yield 20%

    Science.gov (United States)

    E. Kerr

    1977-01-01

    A new tree harvester that extracts both taproot and stem makes a pine tree 20 percent more useful. The machine shears the lateral roots close to the taprrot and then plucks the entire tree from the ground like a carrot. The concept was developed by Dr. Peter Koch at the U.S. Forest Service's Southern Forest Experiment Station in Pineville, La. The shearing...

  16. On Tree-Constrained Matchings and Generalizations

    NARCIS (Netherlands)

    S. Canzar (Stefan); K. Elbassioni; G.W. Klau (Gunnar); J. Mestre

    2011-01-01

    htmlabstractWe consider the following \\textsc{Tree-Constrained Bipartite Matching} problem: Given two rooted trees $T_1=(V_1,E_1)$, $T_2=(V_2,E_2)$ and a weight function $w: V_1\\times V_2 \\mapsto \\mathbb{R}_+$, find a maximum weight matching $\\mathcal{M}$ between nodes of the two trees, such that

  17. Mapping tree density at a global scale

    NARCIS (Netherlands)

    Crowther, T.W.; Glick, H.B.; Covey, K.R.; Bettigole, C.; Maynard, D.S.; Thomas, S.M.; Smith, J.R.; Hintler, G.; Duguid, M.C.; Amatulli, G.; Hengeveld, G.M.; Nabuurs, G.J.

    2015-01-01

    The global extent and distribution of forest trees is central to our understanding of the terrestrial biosphere. We provide the first spatially continuous map of forest tree density at a global scale. This map reveals that the global number of trees is approximately 3.04 trillion, an order of

  18. Community assessment of tropical tree biomass

    DEFF Research Database (Denmark)

    Theilade, Ida; Rutishauser, Ervan; Poulsen, Michael K.

    2015-01-01

    previous experience. Indeed, only experienced monitors were able to discriminate trees with low wood densities. Local ecological knowledge did not allow consistent tree identification across monitors. Conclusion Future REDD+ programmes may benefit from the systematic training of local monitors in tree DBH...

  19. The smallest Randic index for trees

    Indian Academy of Sciences (India)

    Randic indices among trees are determined, and the corresponding extremal trees are characterized. Keywords. Extremal graph; tree; the general Randic index. 1. Introduction. In 1975, Randic [6] introduced the branching index as the sum of d(u)d(v). −1/2 over all edges uv of a (molecular) graph G = (V, E), i.e.. R(G) = ∑.

  20. Aspects of insertion in random trees

    NARCIS (Netherlands)

    Bagchi, Arunabha; Reingold, E.M.

    1982-01-01

    A method formulated by Yao and used by Brown has yielded bounds on the fraction of nodes with specified properties in trees bult by a sequence of random internal nodes in a random tree built by binary search and insertion, and show that in such a tree about bounds better than those now known. We

  1. QDist—Quartet Distance Between Evolutionary Trees

    DEFF Research Database (Denmark)

    Mailund; Pedersen, Christian N. Storm

    2004-01-01

    QDist is a program for computing the quartet distance between two unrooted evolutionary trees, i.e. the number of quartet topology differences between the two trees, where a quartet topology is the topological subtree induced by four species. The implementation is based on an algorithm with running...... time O(n log² n), which makes it practical to compare large trees....

  2. INDIGENOUS WOODLAND TREE SPECIES OF ETHIOPIA

    African Journals Online (AJOL)

    area, Abijata Shalla and Awash National Parks. At each site a total of 15 study trees were selected from 50 x 50 m releves. From each tree, data on tree height, diameter at breast height (DBH), canopy depth and canopy diameter were collected. Effect of treeson undercanopy vegetation diversity was assessed by estimating ...

  3. Maintenance of carbohydrate transport in tall trees

    DEFF Research Database (Denmark)

    Savage, Jessica A.; Beecher, Sierra D.; Clerx, Laura

    2017-01-01

    Trees present a critical challenge to long-distance transport because as a tree grows in height and the transport pathway increases in length, the hydraulic resistance of the vascular tissue should increase. This has led many to question whether trees can rely on a passive transport mechanism...

  4. A composition theorem for decision tree complexity

    OpenAIRE

    Montanaro, Ashley

    2013-01-01

    We completely characterise the complexity in the decision tree model of computing composite relations of the form h = g(f^1,...,f^n), where each relation f^i is boolean-valued. Immediate corollaries include a direct sum theorem for decision tree complexity and a tight characterisation of the decision tree complexity of iterated boolean functions.

  5. Tree planting: not a simple solution

    Science.gov (United States)

    Constance I. Millar; William J. Libby

    1991-01-01

    There's no doubt about it. Planting trees has caught the attention of the American public. In his 1990 State of the Union address, President Bush proposed planting a billion Fees annually for the next ten years. Inspired by the potential for trees to reduce greenhouse gases and mitigate global climate change, tree-planting programs such as Treepeople and Global...

  6. Tree biomass in the North Central Region.

    Science.gov (United States)

    Gerhard K. Raile; Pamela J. Jakes

    1982-01-01

    Methods for calculating tree biomass are outlined, and the biomass on commercial forest land is estimated for 11 north-central states. Tree biomass in the North Central Region totals 3.6 billion tons, or 50 tons per commercial forest acre. For all species, total tree biomass is concentrated in growing-stock boles.

  7. Do you believe in palm trees?

    Science.gov (United States)

    Kevin T. Smith

    2013-01-01

    Palms are real, but are they really trees? The answer depends on definitions. As usually tall, peremrial plants with roots, stems, and leaves, palms seem to qualify. Palms should also qualify because arborists care for them, and arborists care for trees, right? My introduction to botany class defined trees as plants that produce wood. Unraveling the question of whether...

  8. Evaluating realized genetic gains from tree improvement.

    Science.gov (United States)

    J.B. St. Clair

    1993-01-01

    Tree improvement has become an essential part of the management of forest lands for wood production, and predicting yields and realized gains from forests planted with genetically-improved trees will become increasingly important. This paper discusses concepts of tree improvement and genetic gain important to growth and yield modeling, and reviews previous studies of...

  9. Which trees should be removed in thinning?

    Directory of Open Access Journals (Sweden)

    Timo Pukkala

    2015-12-01

    Full Text Available Background: In economically optimal management, trees that are removed in a thinning treatment should be selected on the basis of their value, relative value increment and the effect of removal on the growth of remaining trees. Large valuable trees with decreased value increment should be removed, especially when they overtop smaller trees. Methods: This study optimized the tree selection rule in the thinning treatments of continuous cover management when the aim is to maximize the profitability of forest management. The weights of three criteria (stem value, relative value increment and effect of removal on the competition of remaining trees were optimized together with thinning intervals. Results and conclusions: The results confirmed the hypothesis that optimal thinning involves removing predominantly large trees. Increasing stumpage value, decreasing relative value increment, and increasing competitive influence increased the likelihood that removal is optimal decision. However, if the spatial distribution of trees is irregular, it is optimal to leave large trees in sparse places and remove somewhat smaller trees from dense places. However, the benefit of optimal thinning, as compared to diameter limit cutting is not usually large in pure one-species stands. On the contrary, removing the smallest trees from the stand may lead to significant (30–40 % reductions in the net present value of harvest incomes. Keywords: Continuous cover forestry, Tree selection, High thinning, Optimal management, Spatial distribution, Spatial growth model

  10. THE CONTRIBUTION OF AGROFORESTRY TREE PRODUCTS TO ...

    African Journals Online (AJOL)

    philiph

    A study to evaluate the contributions and economic benefits of agro-forestry tree products to rural farmers in Karim-Lamido Local ... derivable from this practice and its contributions and economic benefit to farmers' livelihood should be intensified ..... and fast growing tree species, and replacement for every tree felled. Gideon ...

  11. Tree Rings in the Tropics: Insights into the Ecology and Climate Sensitivity of Tropical Trees

    NARCIS (Netherlands)

    Brienen, R.J.W.; Schöngart, J.; Zuidema, P.A.

    2016-01-01

    Tree-ring studies provide important contributions to understanding the climate sensitivity of tropical trees and the effects of global change on tropical forests. This chapter reviews recent advances in tropical tree-ring research. In tropical lowlands, tree ring formation is mainly driven by

  12. Tree-space statistics and approximations for large-scale analysis of anatomical trees

    DEFF Research Database (Denmark)

    Feragen, Aasa; Owen, Megan; Petersen, Jens

    2013-01-01

    parametrize the relevant parts of tree-space well. Using the developed approximate statistics, we illustrate how the structure and geometry of airway trees vary across a population and show that airway trees with Chronic Obstructive Pulmonary Disease come from a different distribution in tree-space than...

  13. Shedding light on tree growth : ring analysis of juvenile tropical trees

    NARCIS (Netherlands)

    Soliz Gamboa, C.C.|info:eu-repo/dai/nl/30484053X

    2010-01-01

    In the understory of tropical forests light is believed to be the main limiting growth factor for the newly established trees. Trees growing in shade of the understory may experience periods of slow radial growth. It is expected that gaps created by tree or branch fall will provoke tree growth

  14. Implementing municipal tree planting: Los Angeles million tree initiative

    Science.gov (United States)

    S. Pincetl

    2010-01-01

    Urban forests are increasingly being seen as an important infrastructure that can help cities remediate their environmental impacts. This work reports on the first steps in implementing a million tree program in Los Angeles and the ways such a biogenic—living—infrastructure has been approached. Numbers of studies have been done to quantify the benefits of urban forests...

  15. Tree-space statistics and approximations for large-scale analysis of anatomical trees

    DEFF Research Database (Denmark)

    Feragen, Aasa; Owen, Megan; Petersen, Jens

    2013-01-01

    Statistical analysis of anatomical trees is hard to perform due to differences in the topological structure of the trees. In this paper we define statistical properties of leaf-labeled anatomical trees with geometric edge attributes by considering the anatomical trees as points in the geometric...... (like the mean) can be computed, but efficient alternatives are helpful in speeding up algorithms that use means iteratively, like hypothesis testing. In this paper, we take advantage of a very large dataset (N = 8016) to obtain computable approximations, under the assumption that the data trees...... space of leaf-labeled trees. This tree-space is a geodesic metric space where any two trees are connected by a unique shortest path, which corresponds to a tree deformation. However, tree-space is not a manifold, and the usual strategy of performing statistical analysis in a tangent space and projecting...

  16. Household Tree Planting in Tigrai, Northern Ethiopia: Tree Species, Purposes, and Determinants

    OpenAIRE

    Gebreegziabher, Zenebe; Mekonnen, Alemu; Kassie, Menale; Köhlin, Gunnar

    2010-01-01

    Trees have multiple purposes in rural Ethiopia, providing significant economic and ecological benefits. Planting trees supplies rural households with wood products for their own consumption, as well for sale, and decreases soil degradation. We used cross-sectional household-level data to analyze the determinants of household tree planting and explored the most important tree attributes or purpose(s) that enhance the propensity to plant trees. We set up a sample selection framework that simult...

  17. Inducibility of d-ary trees

    OpenAIRE

    Czabarka, Éva; Dossou-Olory, Audace A. V.; Székely, László A.; Wagner, Stephan

    2018-01-01

    Imitating a recently introduced invariant of trees, we initiate the study of the inducibility of $d$-ary trees (rooted trees whose vertex outdegrees are bounded from above by $d\\geq 2$) with a given number of leaves. We determine the exact inducibility for stars and binary caterpillars. For $T$ in the family of strictly $d$-ary trees (every vertex has $0$ or $d$ children), we prove that the difference between the maximum density of a $d$-ary tree $D$ in $T$ and the inducibility of $D$ is of o...

  18. Making CSB+-Tree Processor Conscious

    DEFF Research Database (Denmark)

    Samuel, Michael; Pedersen, Anders Uhl; Bonnet, Philippe

    2005-01-01

    Cache-conscious indexes, such as CSB+-tree, are sensitive to the underlying processor architecture. In this paper, we focus on how to adapt the CSB+-tree so that it performs well on a range of different processor architectures. Previous work has focused on the impact of node size on the performance...... of the CSB+-tree. We argue that it is necessary to consider a larger group of parameters in order to adapt CSB+-tree to processor architectures as different as Pentium and Itanium. We identify this group of parameters and study how it impacts the performance of CSB+-tree on Itanium 2. Finally, we propose...

  19. Computing Refined Buneman Trees in Cubic Time

    DEFF Research Database (Denmark)

    Brodal, G.S.; Fagerberg, R.; Östlin, A.

    2003-01-01

    in the underlying distance data. Distance based methods based on the theory of Buneman trees and refined Buneman trees avoid this problem by only proposing evolutionary trees whose edges satisfy a number of constraints. These trees might not be fully resolved but there is strong combinatorial evidence for each...... proposed edge. The currently best algorithm for computing the refined Buneman tree from a given distance measure has a running time of O(n 5) and a space consumption of O(n 4). In this paper, we present an algorithm with running time O(n 3) and space consumption O(n 2). The improved complexity of our...

  20. Phosphorus nutrition of mycorrhizal trees.

    Science.gov (United States)

    Plassard, C; Dell, B

    2010-09-01

    Globally, phosphorus (P) limits productivity of trees in many forests and plantations especially in highly weathered, acidic or calcareous profiles. Most trees form mycorrhizal associations which are prevalent in the organic and mineral soil horizons. This review critically examines mechanisms that enhance the acquisition of P by tree roots. Mycorrhizal roots have a greater capacity to take up phosphate (Pi) from the soil solution than non-mycorrhizal root tips. Factors that contribute to this include the extent of extraradical hyphal penetration of soil and the physiology and biochemistry of the fungal/soil and fungal/plant interfaces. Ectomycorrhizal (ECM) trees are likely to benefit from association with basidiomycetes that possess several high-affinity Pi transporters that are expressed in extraradical hyphae and whose expression is enhanced by P deficiency. To understand fully the role of these putative transporters in the symbiosis, data regarding their localization, Pi transport capacities and regulation are required. Some ECM fungi are able to effect release of Pi from insoluble mineral P through excretion of low-molecular-weight organic anions such as oxalate, but the relative contribution of insoluble P dissolution in situ remains to be quantified. How the production of oxalate is regulated by nitrogen remains a key question to be answered. Lastly, phosphatase release from mycorrhizas is likely to play a significant role in the acquisition of Pi from labile organic forms of P (Po). As labile forms of Po can constitute the major fraction of the total P in some tropical and temperate soils, a greater understanding of the forms of Po available to the phosphatases is warranted.

  1. Relationships between stem diameter at breast height (DBH), tree ...

    African Journals Online (AJOL)

    buba

    amount of light that the tree intercepts for photosynthesis. The tree stem size has its own adaptive significance to a tree. It must be strong ... the amount of solar radiation intercepted by a tree. (Tanka, 2006). Stem dbh is also an important tree characteristics and an accurate prediction of tree dimensions. It has become ...

  2. Anatomical modeling of the bronchial tree

    Science.gov (United States)

    Hentschel, Gerrit; Klinder, Tobias; Blaffert, Thomas; Bülow, Thomas; Wiemker, Rafael; Lorenz, Cristian

    2010-02-01

    The bronchial tree is of direct clinical importance in the context of respective diseases, such as chronic obstructive pulmonary disease (COPD). It furthermore constitutes a reference structure for object localization in the lungs and it finally provides access to lung tissue in, e.g., bronchoscope based procedures for diagnosis and therapy. This paper presents a comprehensive anatomical model for the bronchial tree, including statistics of position, relative and absolute orientation, length, and radius of 34 bronchial segments, going beyond previously published results. The model has been built from 16 manually annotated CT scans, covering several branching variants. The model is represented as a centerline/tree structure but can also be converted in a surface representation. Possible model applications are either to anatomically label extracted bronchial trees or to improve the tree extraction itself by identifying missing segments or sub-trees, e.g., if located beyond a bronchial stenosis. Bronchial tree labeling is achieved using a naïve Bayesian classifier based on the segment properties contained in the model in combination with tree matching. The tree matching step makes use of branching variations covered by the model. An evaluation of the model has been performed in a leaveone- out manner. In total, 87% of the branches resulting from preceding airway tree segmentation could be correctly labeled. The individualized model enables the detection of missing branches, allowing a targeted search, e.g., a local rerun of the tree-segmentation segmentation.

  3. Rooted triple consensus and anomalous gene trees

    Directory of Open Access Journals (Sweden)

    Schmidt Heiko A

    2008-04-01

    Full Text Available Abstract Background Anomalous gene trees (AGTs are gene trees with a topology different from a species tree that are more probable to observe than congruent gene trees. In this paper we propose a rooted triple approach to finding the correct species tree in the presence of AGTs. Results Based on simulated data we show that our method outperforms the extended majority rule consensus strategy, while still resolving the species tree. Applying both methods to a metazoan data set of 216 genes, we tested whether AGTs substantially interfere with the reconstruction of the metazoan phylogeny. Conclusion Evidence of AGTs was not found in this data set, suggesting that erroneously reconstructed gene trees are the most significant challenge in the reconstruction of phylogenetic relationships among species with current data. The new method does however rule out the erroneous reconstruction of deep or poorly resolved splits in the presence of lineage sorting.

  4. Meta-learning in decision tree induction

    CERN Document Server

    Grąbczewski, Krzysztof

    2014-01-01

    The book focuses on different variants of decision tree induction but also describes  the meta-learning approach in general which is applicable to other types of machine learning algorithms. The book discusses different variants of decision tree induction and represents a useful source of information to readers wishing to review some of the techniques used in decision tree learning, as well as different ensemble methods that involve decision trees. It is shown that the knowledge of different components used within decision tree learning needs to be systematized to enable the system to generate and evaluate different variants of machine learning algorithms with the aim of identifying the top-most performers or potentially the best one. A unified view of decision tree learning enables to emulate different decision tree algorithms simply by setting certain parameters. As meta-learning requires running many different processes with the aim of obtaining performance results, a detailed description of the experimen...

  5. On finding minimum-diameter clique trees

    Energy Technology Data Exchange (ETDEWEB)

    Blair, J.R.S. (Tennessee Univ., Knoxville, TN (United States). Dept. of Computer Science); Peyton, B.W. (Oak Ridge National Lab., TN (United States))

    1991-08-01

    It is well-known that any chordal graph can be represented as a clique tree (acyclic hypergraph, join tree). Since some chordal graphs have many distinct clique tree representations, it is interesting to consider which one is most desirable under various circumstances. A clique tree of minimum diameter (or height) is sometimes a natural candidate when choosing clique trees to be processed in a parallel computing environment. This paper introduces a linear time algorithm for computing a minimum-diameter clique tree. The new algorithm is an analogue of the natural greedy algorithm for rooting an ordinary tree in order to minimize its height. It has potential application in the development of parallel algorithms for both knowledge-based systems and the solution of sparse linear systems of equations. 31 refs., 7 figs.

  6. Inferring rooted species trees from unrooted gene trees using approximate Bayesian computation.

    Science.gov (United States)

    Alanzi, Ayed R A; Degnan, James H

    2017-11-01

    Methods for inferring species trees from gene trees motivated by incomplete lineage sorting typically use either rooted gene trees to infer a rooted species tree, or use unrooted gene trees to infer an unrooted species tree, which is then typically rooted using one or more outgroups. Theoretically, however, it has been known since 2011 that it is possible to consistently infer the root of the species tree directly from unrooted gene trees without assuming an outgroup. Here, we use approximate Bayesian computation to infer the root of the species tree from unrooted gene trees assuming the multispecies coalescent model. It is hoped that this approach will be useful in cases where an appropriate outgroup is difficult to find and gene trees do not follow a molecular clock. We use approximate Bayesian computation to infer the root of the species tree from unrooted gene trees. This approach could also be useful when there is prior information that makes a small number of root locations plausible in an unrooted species tree. Copyright © 2017 Elsevier Inc. All rights reserved.

  7. MixtureTree annotator: a program for automatic colorization and visual annotation of MixtureTree.

    Directory of Open Access Journals (Sweden)

    Shu-Chuan Chen

    Full Text Available The MixtureTree Annotator, written in JAVA, allows the user to automatically color any phylogenetic tree in Newick format generated from any phylogeny reconstruction program and output the Nexus file. By providing the ability to automatically color the tree by sequence name, the MixtureTree Annotator provides a unique advantage over any other programs which perform a similar function. In addition, the MixtureTree Annotator is the only package that can efficiently annotate the output produced by MixtureTree with mutation information and coalescent time information. In order to visualize the resulting output file, a modified version of FigTree is used. Certain popular methods, which lack good built-in visualization tools, for example, MEGA, Mesquite, PHY-FI, TreeView, treeGraph and Geneious, may give results with human errors due to either manually adding colors to each node or with other limitations, for example only using color based on a number, such as branch length, or by taxonomy. In addition to allowing the user to automatically color any given Newick tree by sequence name, the MixtureTree Annotator is the only method that allows the user to automatically annotate the resulting tree created by the MixtureTree program. The MixtureTree Annotator is fast and easy-to-use, while still allowing the user full control over the coloring and annotating process.

  8. Public Reactions to New Street Tree Planting

    Directory of Open Access Journals (Sweden)

    Ruth A. Rae

    2010-01-01

    Full Text Available MillionTreesNYC, which has the goal of planting one million trees in New York City by 2017, is intended to make New York City a greener, more sustainable city and is part of the Mayor’s comprehensive long term strategic plan, PlaNYC. Through planting a tree at every suitable sidewalk location in the city, the City of New York is transforming blocks and communities, and providing a variety of environmental, social and aesthetic benefits. This article examines the large scale municipal planting of new street trees and the reaction by some of the pubic to this planting.Trees offer benefits to the city overall, but the public may not understand these benefits or the street tree planting process. Between 2007 and 2009, the Department of Parks & Recreation planted 53,235 new street trees, and received 4,108 items of correspondence from the public. The majority of this correspondence consisted of public comments about the City’s new street tree planting policies and processes including placement objections, maintenance concerns, reports of resultant damage from tree planting operations, requests for new street trees and reports of tree conditions.This study describes the operational policies that guide New York City's municipal street tree planting, and results of content and spatial analysis of the correspondence. Qualitative analysis of the correspondence revealed the public perceptions and concerns related to the MillionTreesNYC program. Spatial analysis explored the relationship between the planting locations of new street trees and the locations of the citizen correspondence.Public reactions to this large scale municipal planting are related to the dual public and private nature of the sidewalk, issues of territoriality, responsibility, aesthetics and place attachment. Correspondence volume was associated with the scale of the new street tree block planting program, and the effectiveness of NYC’s 311 Customer Service Center. The discussion

  9. Bijective Diameters of Gene Tree Parsimony Costs.

    Science.gov (United States)

    Gorecki, Pawel; Eulenstein, Oliver

    2017-08-04

    Synthesizing median trees from a collection of gene trees under the biologically motivated gene tree parsimony (GTP) costs has provided credible species tree estimates. GTP costs are defined for each of the classic evolutionary processes. These costs count the minimum number of events necessary to reconcile the gene tree with the species tree where the leaf-genes are mapped to the leaf-species through a function called labeling. To better understand the synthesis of median trees under these costs there is an increased interest in analyzing their diameters. The diameters of a GTP cost between a gene tree and a species tree are the maximum values of this cost of one or both topologies of the trees involved. We are concerned about the diameters of the GTP costs under bijective labelings. While these diameters are linear time computable for the gene duplication and deep coalescence costs, this has been unknown for the classic gene duplication and loss, and for the loss cost. For the first time, we show how to compute these diameters and proof that this can be achieved in linear time, and thus, completing the computational time analysis for all of the bijective diameters under the GTP costs.

  10. Consilium y fortalecimiento regio: consejeros y acción política regia en el reino de León en los siglos XI y XII

    Directory of Open Access Journals (Sweden)

    Fernando Luis Corral

    2011-11-01

    Full Text Available Este trabajo pretende ver la relación existente entre el acto de aconsejar y la realidad de la acción política regia en el reino leonés durante los siglos XI y XII. Como es sabido, el consejo formaba parte de los formulismos vasalláticos –consilium et auxilium– que definían la relación que se establecía entre la nobleza y la monarquía fundamentalmente a través de los juramentos de homenaje en los que la nobleza reconocía, al menos teóricamente, la superioridad del rey como su señor. El monarca, a su vez, por la fidelidad que los nobles le juraban controlaba sus movimientos aunque se veía obligado a recompensarles adecuadamente sus servicios para ganarse su apoyo. Pero a finales del siglo XII, estos formulismos vasalláticos de los que el consilium era un elemento importante se comenzaron a mostrar ineficaces para contrarrestar el poder político de la nobleza y sus movimientos cada vez más autónomos rompiendo su fidelitas con el rey. Paulatinamente la monarquía leonesa utilizó nuevas estrategias de control que, incorporando el Derecho Romano a sus formulaciones teóricas legales, la situó en una posición inmejorable para introducir elementos nuevos de organización y administración del territorio, como los tenentes y merinos regios. Éstas y otras actuaciones fueron determinantes en el fortalecimiento regio que experimentaron los monarcas leoneses durante el siglo XII.Ce travail porte sur le rapport entre l'acte de conseiller et la réalité de l'action politique royale dans le royaume de León au cours des XIe et XIIe siècles. Le conseil apparaît dans les formules qui, comme “consilium et auxilium”, définissent la relation entre la noblesse et la monarchie, essentiellement dans les serments accompagnant l'hommage vassalique et par lesquels la noblesse reconnaissait, du moins théoriquement, la supériorité du roi en tant que seigneur. Grâce à la fidélité que les nobles lui juraient, le monarque exer

  11. ETE: a python Environment for Tree Exploration.

    Science.gov (United States)

    Huerta-Cepas, Jaime; Dopazo, Joaquín; Gabaldón, Toni

    2010-01-13

    Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relationships among different biological entities, thus facilitating their analysis and interpretation. A number of standalone programs are available that focus on tree visualization or that perform specific analyses on them. However, such applications are rarely suitable for large-scale surveys, in which a higher level of automation is required. Currently, many genome-wide analyses rely on tree-like data representation and hence there is a growing need for scalable tools to handle tree structures at large scale. Here we present the Environment for Tree Exploration (ETE), a python programming toolkit that assists in the automated manipulation, analysis and visualization of hierarchical trees. ETE libraries provide a broad set of tree handling options as well as specific methods to analyze phylogenetic and clustering trees. Among other features, ETE allows for the independent analysis of tree partitions, has support for the extended newick format, provides an integrated node annotation system and permits to link trees to external data such as multiple sequence alignments or numerical arrays. In addition, ETE implements a number of built-in analytical tools, including phylogeny-based orthology prediction and cluster validation techniques. Finally, ETE's programmable tree drawing engine can be used to automate the graphical rendering of trees with customized node-specific visualizations. ETE provides a complete set of methods to manipulate tree data structures that extends current functionality in other bioinformatic toolkits of a more general purpose. ETE is free software and can be downloaded from http://ete.cgenomics.org.

  12. TreeFam: a curated database of phylogenetic trees of animal gene families

    DEFF Research Database (Denmark)

    Li, Heng; Coghlan, Avril; Ruan, Jue

    2006-01-01

    TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively......, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins...

  13. Helping to increase tree crops

    International Nuclear Information System (INIS)

    1970-01-01

    Tree crops such as coffee, coconuts, palm oil, citrus fruits and cocoa are of major importance to the economies of countries in Africa, Asia and Latin America, and may be a prime source of foreign exchange earnings. The search for ways to improve efficiently the yields of crops like these - now being aided by the Division of Atomic Energy in Food and Agriculture operated jointly with the Food and Agriculture Organization - thus has a clearly defined practical goal. D. Nethsinghe deals here with some of the work. (author)

  14. VC-dimension of univariate decision trees.

    Science.gov (United States)

    Yildiz, Olcay Taner

    2015-02-01

    In this paper, we give and prove the lower bounds of the Vapnik-Chervonenkis (VC)-dimension of the univariate decision tree hypothesis class. The VC-dimension of the univariate decision tree depends on the VC-dimension values of its subtrees and the number of inputs. Via a search algorithm that calculates the VC-dimension of univariate decision trees exhaustively, we show that our VC-dimension bounds are tight for simple trees. To verify that the VC-dimension bounds are useful, we also use them to get VC-generalization bounds for complexity control using structural risk minimization in decision trees, i.e., pruning. Our simulation results show that structural risk minimization pruning using the VC-dimension bounds finds trees that are more accurate as those pruned using cross validation.

  15. Etude de la levée de dormance et du débourrement des bourgeons de noyer (Juglans regia L., cv Franquette) soumis à des températures supérieures à 15 °C au cours de leur période de repos apparent

    OpenAIRE

    Mauget, Jean-Claude

    1983-01-01

    Des noyers (Juglans regia L., cv. « Franquette »), soumis à la température toujours supérieure à 15 °C d’une serre climatisée, à partir de septembre, octobre, novembre ou décembre, entrent en végétation plus tardivement que les témoins restés à l’extérieur ; le retard est d’autant plus grand que le transfert dans des conditions supérieures à 15 °C est réalisé plus précocement. Si l’on effectue ce transfert en janvier, on observe au contraire un débourrement beaucoup plus précoce. Ces deu...

  16. Maximum Bounded Rooted-Tree Packing Problem

    OpenAIRE

    Kerivin, Herve; Leblet, Jimmy; Simon, Gwendal; Zhou, Fen

    2011-01-01

    Given a graph and a root, the Maximum Bounded Rooted-Tree Packing (MBRTP) problem aims at finding K rooted-trees that span the largest subset of vertices, when each vertex has a limited outdegree. This problem is motivated by peer-to-peer streaming overlays in under-provisioned systems. We prove that the MBRTP problem is NP-complete. We present two polynomial-time algorithms that computes an optimal solution on complete graphs and trees respectively.

  17. Tank waste remediation system architecture tree; TOPICAL

    International Nuclear Information System (INIS)

    PECK, L.G.

    1999-01-01

    The TWRS Architecture Tree presented in this document is a hierarchical breakdown to support the TWRS systems engineering analysis of the TWRS physical system, including facilities, hardware and software. The purpose for this systems engineering architecture tree is to describe and communicate the system's selected and existing architecture, to provide a common structure to improve the integration of work and resulting products, and to provide a framework as a basis for TWRS Specification Tree development

  18. Dead Trees Bring Life to Forest Critters

    Science.gov (United States)

    Thomas Nicholls; Mike Ostry

    2003-01-01

    What good is a dying or dead tree in a forest? Dead and dying trees don't awe us with their beauty; they just stand or lie there on the forest floor, offering no promise of lumber or other wood products we need. But if we look more closely at such trees, we may see lots of life in them: a raccoon family huddled in a burrow, a downy woodpecker excavating another...

  19. Behavior Trees for UAV Mission Management

    OpenAIRE

    Klöckner, Andreas

    2013-01-01

    Behavior trees are a recent development in artificial intelligence for computer games. Their application has been proposed to increase modularity of an unmanned aerial vehicle's control system. This paper first describes advantages of behavior trees for use in mission management. The paper then points out research towards their deployment. Finally, newly developed transient tasks are introduced to behavior trees. These allow for finite-state-machine-like initialization and interruption of tas...

  20. Tank waste remediation system architecture tree

    International Nuclear Information System (INIS)

    PECK, L.G.

    1999-01-01

    The TWRS Architecture Tree presented in this document is a hierarchical breakdown to support the TWRS systems engineering analysis of the TWRS physical system, including facilities, hardware and software. The purpose for this systems engineering architecture tree is to describe and communicate the system's selected and existing architecture, to provide a common structure to improve the integration of work and resulting products, and to provide a framework as a basis for TWRS Specification Tree development

  1. On Tree-Constrained Matchings and Generalizations

    OpenAIRE

    Canzar, Stefan; Elbassioni, Khaled; Klau, Gunnar W.; Mestre, Julián

    2015-01-01

    htmlabstractWe consider the following \\textsc{Tree-Constrained Bipartite Matching} problem: Given two rooted trees $T_1=(V_1,E_1)$, $T_2=(V_2,E_2)$ and a weight function $w: V_1\\times V_2 \\mapsto \\mathbb{R}_+$, find a maximum weight matching $\\mathcal{M}$ between nodes of the two trees, such that none of the matched nodes is an ancestor of another matched node in either of the trees. This generalization of the classical bipartite matching problem appears, for example, in the computational ana...

  2. On the centroid of increasing trees

    OpenAIRE

    Durant, Kevin; Wagner, Stephan

    2018-01-01

    A centroid node in a tree is a node for which the sum of the distances to all other nodes attains its minimum, or equivalently a node with the property that none of its branches contains more than half of the other nodes. We generalise some known results regarding the behaviour of centroid nodes in random recursive trees (due to Moon) to the class of very simple increasing trees, which also includes the families of plane-oriented and $d$-ary increasing trees. In particular, we derive limits o...

  3. Vessel tree extraction using locally optimal paths

    DEFF Research Database (Denmark)

    Lo, Pechin Chien Pau; van Ginneken, Bram; de Bruijne, Marleen

    2010-01-01

    This paper proposes a method to extract vessel trees by continually extending detected branches with locally optimal paths. Our approach uses a cost function from a multi scale vessel enhancement filter. Optimal paths are selected based on rules that take into account the geometric characteristics...... of the vessel tree. Experiments were performed on 10 low dose chest CT scans for which the pulmonary vessel trees were extracted. The proposed method is shown to extract a better connected vessel tree and extract more of the small peripheral vessels in comparison to applying a threshold on the output...

  4. Computer aided fault tree synthesis

    International Nuclear Information System (INIS)

    Poucet, A.

    1983-01-01

    Nuclear as well as non-nuclear organisations are showing during the past few years a growing interest in the field of reliability analysis. This urges for the development of powerful, state of the art methods and computer codes for performing such analysis on complex systems. In this report an interactive, computer aided approach is discussed, based on the well known fault tree technique. The time consuming and difficut task of manually constructing a system model (one or more fault trees) is replaced by an efficient interactive procedure in which the flexibility and the learning process inherent to the manual approach are combined with the accuracy in the modelling and the speed of the fully automatical approach. The method presented is based upon the use of a library containing component models. The possibility of setting up a standard library of models of general use and the link with a data collection system are discussed. The method has been implemented in the CAFTS-SALP software package which is described shortly in the report

  5. Tree asymmetry--a sensitive and practical measure for binary topological trees.

    Science.gov (United States)

    Van Pelt, J; Uylings, H B; Verwer, R W; Pentney, R J; Woldenberg, M J

    1992-09-01

    The topological structure of a binary tree is characterized by a measure called tree asymmetry, defined as the mean value of the asymmetry of its partitions. The statistical properties of this tree-asymmetry measure have been studied using a growth model for binary trees. The tree-asymmetry measure appears to be sensitive for topological differences and the tree-asymmetry expectation for the growth model that we used appears to be almost independent of the size of the trees. These properties and the simple definition make the measure suitable for practical use, for instance for characterizing, comparing and interpreting sets of branching patterns. Examples are given of the analysis of three sets of neuronal branching patterns. It is shown that the variance in tree-asymmetry values for these observed branching patterns corresponds perfectly with the variance predicted by the used growth model.

  6. Tree architecture and life-history strategies across 200 co-occurring tropical tree species

    NARCIS (Netherlands)

    Iida, Y.; Kohyama, T.S.; Kubo, T.; Kassim, A.R.; Poorter, L.; Sterck, F.J.; Potts, M.D.

    2011-01-01

    1. Tree architecture is thought to allow species to partition horizontal and vertical light gradients in the forest canopy. Tree architecture is closely related to light capture, carbon gain and the efficiency with which trees reach the canopy. Previous studies that investigated how light gradients

  7. Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction.

    Science.gov (United States)

    Mai, Uyen; Sayyari, Erfan; Mirarab, Siavash

    2017-01-01

    Phylogenetic trees inferred using commonly-used models of sequence evolution are unrooted, but the root position matters both for interpretation and downstream applications. This issue has been long recognized; however, whether the potential for discordance between the species tree and gene trees impacts methods of rooting a phylogenetic tree has not been extensively studied. In this paper, we introduce a new method of rooting a tree based on its branch length distribution; our method, which minimizes the variance of root to tip distances, is inspired by the traditional midpoint rerooting and is justified when deviations from the strict molecular clock are random. Like midpoint rerooting, the method can be implemented in a linear time algorithm. In extensive simulations that consider discordance between gene trees and the species tree, we show that the new method is more accurate than midpoint rerooting, but its relative accuracy compared to using outgroups to root gene trees depends on the size of the dataset and levels of deviations from the strict clock. We show high levels of error for all methods of rooting estimated gene trees due to factors that include effects of gene tree discordance, deviations from the clock, and gene tree estimation error. Our simulations, however, did not reveal significant differences between two equivalent methods for species tree estimation that use rooted and unrooted input, namely, STAR and NJst. Nevertheless, our results point to limitations of existing scalable rooting methods.

  8. Evaluating a non-destructive method for calibrating tree biomass equations derived from tree branching architecture

    NARCIS (Netherlands)

    MacFarlane, D.W.; Kuyah, S.; Mulia, R.; Dietz, J.; Muthuri, C.; Noordwijk, van M.

    2014-01-01

    Functional branch analysis (FBA) is a promising non-destructive alternative to the standard destructive method of tree biomass equation development. In FBA, a theoretical model of tree branching architecture is calibrated with measurements of tree stems and branches to estimate the coefficients of

  9. PEROXIDASA DE PLANTAS TROPICALES

    Directory of Open Access Journals (Sweden)

    Ivan Yu Sakharov

    2010-08-01

    Full Text Available Se determinó la actividad de la peroxidasa (EC 1.11.1.7 en 7 frutos, 13 raíces y 31 hojas de plantas tropicales que crecen en Colombia. Se encontró que la actividad de la peroxidasa varía ampliamente de una especie a otra. Para el fruto de balazos (Monstera deliciosa se encontró que la actividad de la peroxidasa depende del grado de madurez. Por el contrario, la actividad de peroxidasa de las hojas de la palma de botella (Roystonea regia se mantiene constante todo el año. Algunas especies presentaron alta actividad de peroxidasa como la raíz de batata (Ipomoea batatas, las hojas de pasto guinea (Panicum máximum, las de dormidera (Mimosa pigra, las de higuerilla (Riciims communis L. y las de las siguientes palmas: mararai (Aiphanes caríotifolia, de botella (Roystonea regia, dactilera (Phoenix dactylifera y africana (Elaeis guineensis. Además, mediante isoelectroenfoque se hallaron peroxidasas aniónicas (pl 3.4 - 5.6 tanto en la raíz de batata como en las palmas analizadas.

  10. The history of Newton's apple tree

    Science.gov (United States)

    Keesing, R. G.

    1998-05-01

    This article contains a brief introduction to Newton's early life to put into context the subsequent events in this narrative. It is followed by a summary of accounts of Newton's famous story of his discovery of universal gravitation which was occasioned by the fall of an apple in the year 1665/6. Evidence of Newton's friendship with a prosperous Yorkshire family who planted an apple tree arbour in the early years of the eighteenth century to celebrate his discovery is presented. A considerable amount of new and unpublished pictorial and documentary material is included relating to a particular apple tree which grew in the garden of Woolsthorpe Manor (Newton's birthplace) and which blew down in a storm before the year 1816. Evidence is then presented which describes how this tree was chosen to be the focus of Newton's account. Details of the propagation of the apple tree growing in the garden at Woolsthorpe in the early part of the last century are then discussed, and the results of a dendrochronological study of two of these trees is presented. It is then pointed out that there is considerable evidence to show that the apple tree presently growing at Woolsthorpe and known as 'Newton's apple tree' is in fact the same specimen which was identified in the middle of the eighteenth century and which may now be 350 years old. In conclusion early results from a radiocarbon dating study being carried out at the University of Oxford on core samples from the Woolsthorpe tree lend support to the contention that the present tree is one and the same as that identified as Newton's apple tree more than 200 years ago. Very recently genetic fingerprinting techniques have been used in an attempt to identify from which sources the various 'Newton apple trees' planted throughout the world originate. The tentative result of this work suggests that there are two separate varieties of apple tree in existence which have been accepted as 'the tree'. One may conclude that at least some of

  11. DATING OF LATE PLEISTOCENE TREE-RING SERIES FROM JAPAN

    NARCIS (Netherlands)

    van der Plicht, J.; Imamura, M.; Sakamoto, M.; Boaretto, E.; Rebollo Franco, N.R.

    2012-01-01

    We have radiocarbon dated series of tree rings from 2 fossil trees (named ND-113 and the Fuji tree) buried in fossil volcanic avalanche deposits in Japan. They are dendrochronologically floating, dating beyond the tree-ring part of the C-14 calibration curve. The trees show about 350 and 400 annual

  12. Fast Tree: Computing Large Minimum-Evolution Trees with Profiles instead of a Distance Matrix

    Energy Technology Data Exchange (ETDEWEB)

    N. Price, Morgan; S. Dehal, Paramvir; P. Arkin, Adam

    2009-07-31

    Gene families are growing rapidly, but standard methods for inferring phylogenies do not scale to alignments with over 10,000 sequences. We present FastTree, a method for constructing large phylogenies and for estimating their reliability. Instead of storing a distance matrix, FastTree stores sequence profiles of internal nodes in the tree. FastTree uses these profiles to implement neighbor-joining and uses heuristics to quickly identify candidate joins. FastTree then uses nearest-neighbor interchanges to reduce the length of the tree. For an alignment with N sequences, L sites, and a different characters, a distance matrix requires O(N^2) space and O(N^2 L) time, but FastTree requires just O( NLa + N sqrt(N) ) memory and O( N sqrt(N) log(N) L a ) time. To estimate the tree's reliability, FastTree uses local bootstrapping, which gives another 100-fold speedup over a distance matrix. For example, FastTree computed a tree and support values for 158,022 distinct 16S ribosomal RNAs in 17 hours and 2.4 gigabytes of memory. Just computing pairwise Jukes-Cantor distances and storing them, without inferring a tree or bootstrapping, would require 17 hours and 50 gigabytes of memory. In simulations, FastTree was slightly more accurate than neighbor joining, BIONJ, or FastME; on genuine alignments, FastTree's topologies had higher likelihoods. FastTree is available at http://microbesonline.org/fasttree.

  13. Genealogical Trees of Scientific Papers.

    Science.gov (United States)

    Waumans, Michaël Charles; Bersini, Hugues

    2016-01-01

    Many results have been obtained when studying scientific papers citations databases in a network perspective. Articles can be ranked according to their current in-degree and their future popularity or citation counts can even be predicted. The dynamical properties of such networks and the observation of the time evolution of their nodes started more recently. This work adopts an evolutionary perspective and proposes an original algorithm for the construction of genealogical trees of scientific papers on the basis of their citation count evolution in time. The fitness of a paper now amounts to its in-degree growing trend and a "dying" paper will suddenly see this trend declining in time. It will give birth and be taken over by some of its most prevalent citing "offspring". Practically, this might be used to trace the successive published milestones of a research field.

  14. Tree and nontree multiparticle amplitudes

    International Nuclear Information System (INIS)

    Goldberg, H.; Vaughn, M.T.

    1991-01-01

    We examine the behavior of the connected n-point function in a zero-dimensional scalar theory (scrL=-1/2m 2 φ 2 -1/4λφ 4 ). The problematic n exclamation point(√λ ) n behavior for large n, previously found for tree graphs in scalar field theory, is again obtained in saddle-point approximation in this model. However, a similar behavior, n exclamation point[f(λ)] n , persists in the full theory, where f∼ √λ for λ→0, f∼λ -1/4 for λ much-gt 1. This behavior can be traced to the existence of zeros in the complex J plane of the generating functional Z(J), which in turn is controlled by the asymptotic behavior in |J| of Z(J) calculated in saddle-point approximation. The application of these results to field theory is discussed

  15. A coinductive calculus of binary trees

    NARCIS (Netherlands)

    A.M. Silva (Alexandra); J.J.M.M. Rutten (Jan)

    2007-01-01

    htmlabstractWe study the set T_A of infinite binary trees with nodes labelled in a semiring A from a coalgebraic perspective. We present coinductive definition and proof principles based on the fact that T_A carries a final coalgebra structure. By viewing trees as formal power series, we develop a

  16. Efficient Computation of Popular Phylogenetic Tree Measures

    DEFF Research Database (Denmark)

    Tsirogiannis, Constantinos; Sandel, Brody Steven; Cheliotis, Dimitris

    2012-01-01

    Given a phylogenetic tree $\\mathcal{T}$ of n nodes, and a sample R of its tips (leaf nodes) a very common problem in ecological and evolutionary research is to evaluate a distance measure for the elements in R. Two of the most common measures of this kind are the Mean Pairwise Distance ($\\ensurem...... software package for processing phylogenetic trees....

  17. Sprouting of dormant buds on border trees

    Science.gov (United States)

    G.R., Jr. Trimble; H. Clay Smith; H. Clay Smith

    1970-01-01

    As part of an evaluation of silvicultura1 systems used in managing Appalachian hardwoods, we are studying degrade of border trees surrounding harvest-cut openings made in the patch cutting and group selection systems. One facet of this research dealt with determining what portion of visually evident dormant buds on border tree boles sprouted when the openings were cut...

  18. Do Trees Tell About the Past?

    Indian Academy of Sciences (India)

    Tree, chronos = time, logos = study. .... The heart- wood in many species has different colors and hues. The ratio of sapwood to heartwood varies across species. Some of the climate change models that use tree physiology for .... The principle of limiting factors states that the rate of plant process constrained by the primary.

  19. Structure, composition, and condition of overstory trees

    Science.gov (United States)

    Daniel A. Yaussy; Todd F. Hutchinson; Elaine Kennedy Sutherland

    2003-01-01

    The structure, composition, and condition of overstory trees in the four study areas prior to prescribed fire treatments are summarized. Stand initiation dates were similar among the study areas (ca. 1885), and coincided with the decline of the charcoal iron industry in southern Ohio. Tree basal area averaged 26.8m²/ha and was not significantly different among...

  20. Market-based approaches to tree valuation

    Science.gov (United States)

    Geoffrey H. Donovan; David T. Butry

    2008-01-01

    A recent four-part series in Arborist News outlined different appraisal processes used to value urban trees. The final article in the series described the three generally accepted approaches to tree valuation: the sales comparison approach, the cost approach, and the income capitalization approach. The author, D. Logan Nelson, noted that the sales comparison approach...

  1. Navigation and Tree Mapping in Orchards

    DEFF Research Database (Denmark)

    Jæger-Hansen, Claes Lund; Griepentrog, Hans W.; Andersen, Jens Christian

    . The average accuracy for the center point estimation is 0.2 m in the along track direction and 0.35 m in the across track direction. The goal of the tree mapping algorithm is create a database of individual trees, and be the basis for creation of a graph map that can be used for mission planning...

  2. A Fuzzy Neural Tree for Possibilistic Reliability

    NARCIS (Netherlands)

    Ciftcioglu, O.

    2008-01-01

    An innovative neural fuzzy system is considered for possibilistic reliability using a neural tree structure with nodes of neuronal type. The total tree structure works effectively as a fuzzy logic system where the possibility theory plays important role with Gaussian possibility distribution at the

  3. The "Ride for Russia" Tree Lichen Survey

    Science.gov (United States)

    Young, Simon

    2013-01-01

    The prevalence of nine indicator lichens found on trees in Northern Europe and Western Russia was used for monitoring air quality. The 4200 mile route of the survey went through eight countries. Surveys were carried out in cities, towns, countryside and forests, and along motorways. The author has conducted tree lichen surveys with pupils from…

  4. The production of homozygous tree material

    Science.gov (United States)

    Reinhard F. Stettler; George E. Howe

    1966-01-01

    Homozygous trees will never be the desired ultimate step in a forest tree improvement program. However, they will serve many purposes in forest genetics research: (1) in the detection of genetic markers; (2) in the isolation of traits under simple genetic control for the study of growth and differentiation phenomena; (3) as a tool as well as reference material in the...

  5. Induced chemical defences in Colophospermum mopane trees ...

    African Journals Online (AJOL)

    A field experiment was conducted in which Mopane (Colophospermum mopane) trees were subjected to three different canopy treatments:felling of trees at a mean height of 0.7m above ground level, felling at a height of 2m, or pruning of selected branches. These treatments were intended to simulate wood harvesting by ...

  6. Binary trees equipped with semivaluations | Pajoohesh ...

    African Journals Online (AJOL)

    Our interest in this lattice stems from its application to binary decision trees. Binary decision trees form a crucial tool for algorithmic time analysis. The lattice properties of Tn are studied and we show that every Tn has a sublattice isomorphic to Tn-1 and prove that Tn is generated by Tn-1. Also we show that the distance from ...

  7. Structure of an urban Christmas tree market

    Science.gov (United States)

    Thomas H. Pendleton; Lawrence D. Garrett; Lawrence D. Garrett

    1973-01-01

    The retail Christmas tree market in Winston-Salem, N.C., was studied 3 years. Types of retailers and their sales are described. Best sales were made by dealers who had lots on heavily traveled streets in business districts, had ample parking facilities, advertised, and displayed their trees well.

  8. Elimination of Constraints from Feature Trees

    NARCIS (Netherlands)

    van den Broek, P.M.; Galvao, I.; Noppen, J.A.R.

    2008-01-01

    We present an algorithm which eliminates constraints from a feature model whose feature diagram is a tree and whose constraints are "requires" or "excludes" constraints. The algorithm constructs a feature tree which has the same semantics as the original feature model. The computational complexity

  9. Understanding search trees via statistical physics

    Indian Academy of Sciences (India)

    Abstract. We study the random m-ary search tree model (where m stands for the number of branches of the search tree), an important problem for data storage in computer science, using a variety of statistical physics techniques that allow us to obtain exact asymptotic results. In particular, we show that the probability ...

  10. Demography of threatened tree species in Vietnam

    NARCIS (Netherlands)

    Chien, P.D.

    2006-01-01

    Demography of threatened tree species in Vietnam (Summary for the library) Effective conservation of threatened tree species requires information on natural dynamics and future prospects of populations of these species. Such information can be obtained from demographic studies. We investigated the

  11. Exploring connections between trees and human health

    Science.gov (United States)

    Geoffrey Donovan; Marie. Oliver

    2014-01-01

    Humans have intuitively understood the value of trees to their physical and mental health since the beginning of recorded time. A scientist with the Pacific Northwest Research Station wondered if such a link could be scientifically validated. His research team took advantage of an infestation of emerald ash borer, an invasive pest that kills ash trees, to conduct a...

  12. Naive Fault Tree : formulation of the approach

    NARCIS (Netherlands)

    Rajabalinejad, M

    2017-01-01

    Naive Fault Tree (NFT) accepts a single value or a range of values for each basic event and returns values for the top event. This accommodates the need of commonly used Fault Trees (FT) for precise data making them prone to data concerns and limiting their area of application. This paper extends

  13. Language distance and tree reconstruction

    International Nuclear Information System (INIS)

    Petroni, Filippo; Serva, Maurizio

    2008-01-01

    Languages evolve over time according to a process in which reproduction, mutation and extinction are all possible. This is very similar to haploid evolution for asexual organisms and for the mitochondrial DNA of complex ones. Exploiting this similarity, it is possible, in principle, to verify hypotheses concerning the relationship among languages and to reconstruct their family tree. The key point is the definition of the distances among pairs of languages in analogy with the genetic distances among pairs of organisms. Distances can be evaluated by comparing grammar and/or vocabulary, but while it is difficult, if not impossible, to quantify grammar distance, it is possible to measure a distance from vocabulary differences. The method used by glottochronology computes distances from the percentage of shared 'cognates', which are words with a common historical origin. The weak point of this method is that subjective judgment plays a significant role. Here we define the distance of two languages by considering a renormalized edit distance among words with the same meaning and averaging over the two hundred words contained in a Swadesh list. In our approach the vocabulary of a language is the analogue of DNA for organisms. The advantage is that we avoid subjectivity and, furthermore, reproducibility of results is guaranteed. We apply our method to the Indo-European and the Austronesian groups, considering, in both cases, fifty different languages. The two trees obtained are, in many respects, similar to those found by glottochronologists, with some important differences as regards the positions of a few languages. In order to support these different results we separately analyze the structure of the distances of these languages with respect to all the others

  14. Language distance and tree reconstruction

    Science.gov (United States)

    Petroni, Filippo; Serva, Maurizio

    2008-08-01

    Languages evolve over time according to a process in which reproduction, mutation and extinction are all possible. This is very similar to haploid evolution for asexual organisms and for the mitochondrial DNA of complex ones. Exploiting this similarity, it is possible, in principle, to verify hypotheses concerning the relationship among languages and to reconstruct their family tree. The key point is the definition of the distances among pairs of languages in analogy with the genetic distances among pairs of organisms. Distances can be evaluated by comparing grammar and/or vocabulary, but while it is difficult, if not impossible, to quantify grammar distance, it is possible to measure a distance from vocabulary differences. The method used by glottochronology computes distances from the percentage of shared 'cognates', which are words with a common historical origin. The weak point of this method is that subjective judgment plays a significant role. Here we define the distance of two languages by considering a renormalized edit distance among words with the same meaning and averaging over the two hundred words contained in a Swadesh list. In our approach the vocabulary of a language is the analogue of DNA for organisms. The advantage is that we avoid subjectivity and, furthermore, reproducibility of results is guaranteed. We apply our method to the Indo-European and the Austronesian groups, considering, in both cases, fifty different languages. The two trees obtained are, in many respects, similar to those found by glottochronologists, with some important differences as regards the positions of a few languages. In order to support these different results we separately analyze the structure of the distances of these languages with respect to all the others.

  15. Tree Height and DBH Growth Model Establishment of Main Tree Species in Wuling Mountain Small Watershed

    Science.gov (United States)

    Luo, Jia; Zhang, Min; Zhou, Xiaoling; Chen, Jianhua; Tian, Yuxin

    2018-01-01

    Taken 4 main tree species in the Wuling mountain small watershed as research objects, 57 typical sample plots were set up according to the stand type, site conditions and community structure. 311 goal diameter-class sample trees were selected according to diameter-class groups of different tree-height grades, and the optimal fitting models of tree height and DBH growth of main tree species were obtained by stem analysis using Richard, Logistic, Korf, Mitscherlich, Schumacher, Weibull theoretical growth equations, and the correlation coefficient of all optimal fitting models reached above 0.9. Through the evaluation and test, the optimal fitting models possessed rather good fitting precision and forecast dependability.

  16. Tree growth studies on uranium mill tailings

    International Nuclear Information System (INIS)

    Murray, D.R.; Turcotte, M.

    1982-01-01

    Coniferous trees planted in 1974 and deciduous species that have volunteered since 1970 on uranium mill tailings that had been stabilized to varying degrees using limestone and vegetation were evaluated. Their survival and growth rates were compared with those from other investigations. Competition for light appears to be a major contributor to mortality. Differences in soil moisture conditions under a tree stand as compared to those under a grass sward are potentially significant enough to affect the tailings hydrology and effluent contamination. Recommendations include planting seeds of deciduous species or deciduous and coniferous seedlings on strips of freshly disturbed tailings. The disturbed strips would provide reduced competition for the initial year and assist in tree survival. The planting of block stands of coniferous or deciduous trees would be useful for evaluating the hydrological impact of the trees as compared to the present grass sward

  17. Big data of tree species distributions

    DEFF Research Database (Denmark)

    Serra-Diaz, Josep M.; Enquist, Brian J.; Maitner, Brian

    2018-01-01

    are currently available in big databases, several challenges hamper their use, notably geolocation problems and taxonomic uncertainty. Further, we lack a complete picture of the data coverage and quality assessment for open/public databases of tree occurrences. Methods: We combined data from five major......Background: Trees play crucial roles in the biosphere and societies worldwide, with a total of 60,065 tree species currently identified. Increasingly, a large amount of data on tree species occurrences is being generated worldwide: from inventories to pressed plants. While many of these data...... aggregators of occurrence data (e.g. Global Biodiversity Information Facility, Botanical Information and Ecological Network v.3, DRYFLOR, RAINBIO and Atlas of Living Australia) by creating a workflow to integrate, assess and control data quality of tree species occurrences for species distribution modeling...

  18. Success tree method of resources evaluation

    International Nuclear Information System (INIS)

    Chen Qinglan; Sun Wenpeng

    1994-01-01

    By applying the reliability theory in system engineering, the success tree method is used to transfer the expert's recognition on metallogenetic regularities into the form of the success tree. The aim of resources evaluation is achieved by means of calculating the metallogenetic probability or favorability of the top event of the success tree. This article introduces in detail, the source, principle of the success tree method and three kinds of calculation methods, expounds concretely how to establish the success tree of comprehensive uranium metallogenesis as well as the procedure from which the resources evaluation is performed. Because this method has not restrictions on the number of known deposits and calculated area, it is applicable to resources evaluation for different mineral species, types and scales and possesses good prospects of development

  19. Timing-Driven-Testable Convergent Tree Adders

    Directory of Open Access Journals (Sweden)

    Johnnie A. Huang

    2002-01-01

    Full Text Available Carry lookahead adders have been, over the years, implemented in complex arithmetic units due to their regular structure which leads to efficient VLSI implementation for fast adders. In this paper, timing-driven testability synthesis is first performed on a tree adder. It is shown that the structure of the tree adder provides for a high fanout with an imbalanced tree structure, which likely contributes to a racing effect and increases the delay of the circuit. The timing optimization is then realized by reducing the maximum fanout of the adder and by balancing the tree circuit. For a 56-b testable tree adder, the optimization produces a 6.37%increase in speed of the critical path while only contributing a 2.16% area overhead. The full testability of the circuit is achieved in the optimized adder design.

  20. Interactive wood combustion for botanical tree models

    KAUST Repository

    Pirk, Sören

    2017-11-22

    We present a novel method for the combustion of botanical tree models. Tree models are represented as connected particles for the branching structure and a polygonal surface mesh for the combustion. Each particle stores biological and physical attributes that drive the kinetic behavior of a plant and the exothermic reaction of the combustion. Coupled with realistic physics for rods, the particles enable dynamic branch motions. We model material properties, such as moisture and charring behavior, and associate them with individual particles. The combustion is efficiently processed in the surface domain of the tree model on a polygonal mesh. A user can dynamically interact with the model by initiating fires and by inducing stress on branches. The flames realistically propagate through the tree model by consuming the available resources. Our method runs at interactive rates and supports multiple tree instances in parallel. We demonstrate the effectiveness of our approach through numerous examples and evaluate its plausibility against the combustion of real wood samples.

  1. Representing Boolean Functions by Decision Trees

    KAUST Repository

    Chikalov, Igor

    2011-01-01

    A Boolean or discrete function can be represented by a decision tree. A compact form of decision tree named binary decision diagram or branching program is widely known in logic design [2, 40]. This representation is equivalent to other forms, and in some cases it is more compact than values table or even the formula [44]. Representing a function in the form of decision tree allows applying graph algorithms for various transformations [10]. Decision trees and branching programs are used for effective hardware [15] and software [5] implementation of functions. For the implementation to be effective, the function representation should have minimal time and space complexity. The average depth of decision tree characterizes the expected computing time, and the number of nodes in branching program characterizes the number of functional elements required for implementation. Often these two criteria are incompatible, i.e. there is no solution that is optimal on both time and space complexity. © Springer-Verlag Berlin Heidelberg 2011.

  2. New perspectives on the ecology of tree structure and tree communities through terrestrial laser scanning.

    Science.gov (United States)

    Malhi, Yadvinder; Jackson, Tobias; Patrick Bentley, Lisa; Lau, Alvaro; Shenkin, Alexander; Herold, Martin; Calders, Kim; Bartholomeus, Harm; Disney, Mathias I

    2018-04-06

    Terrestrial laser scanning (TLS) opens up the possibility of describing the three-dimensional structures of trees in natural environments with unprecedented detail and accuracy. It is already being extensively applied to describe how ecosystem biomass and structure vary between sites, but can also facilitate major advances in developing and testing mechanistic theories of tree form and forest structure, thereby enabling us to understand why trees and forests have the biomass and three-dimensional structure they do. Here we focus on the ecological challenges and benefits of understanding tree form, and highlight some advances related to capturing and describing tree shape that are becoming possible with the advent of TLS. We present examples of ongoing work that applies, or could potentially apply, new TLS measurements to better understand the constraints on optimization of tree form. Theories of resource distribution networks, such as metabolic scaling theory, can be tested and further refined. TLS can also provide new approaches to the scaling of woody surface area and crown area, and thereby better quantify the metabolism of trees. Finally, we demonstrate how we can develop a more mechanistic understanding of the effects of avoidance of wind risk on tree form and maximum size. Over the next few years, TLS promises to deliver both major empirical and conceptual advances in the quantitative understanding of trees and tree-dominated ecosystems, leading to advances in understanding the ecology of why trees and ecosystems look and grow the way they do.

  3. Cache-Oblivious Search Trees via Binary Trees of Small Height

    DEFF Research Database (Denmark)

    Brodal, G.S.; Fagerberg, R.; Jacob, R.

    2002-01-01

    We propose a version of cache oblivious search trees which is simpler than the previous proposal of Bender, Demaine and Farach-Colton and has the same complexity bounds. In particular, our data structure avoids the use of weight balanced B-trees, and can be implemented as just a single array......, and range queries in worst case O(logB n + k/B) memory transfers, where k is the size of the output.The basic idea of our data structure is to maintain a dynamic binary tree of height log n+O(1) using existing methods, embed this tree in a static binary tree, which in turn is embedded in an array in a cache...... oblivious fashion, using the van Emde Boas layout of Prokop.We also investigate the practicality of cache obliviousness in the area of search trees, by providing an empirical comparison of different methods for laying out a search tree in memory....

  4. An efficient and extensible approach for compressing phylogenetic trees

    KAUST Repository

    Matthews, Suzanne J

    2011-01-01

    Background: Biologists require new algorithms to efficiently compress and store their large collections of phylogenetic trees. Our previous work showed that TreeZip is a promising approach for compressing phylogenetic trees. In this paper, we extend our TreeZip algorithm by handling trees with weighted branches. Furthermore, by using the compressed TreeZip file as input, we have designed an extensible decompressor that can extract subcollections of trees, compute majority and strict consensus trees, and merge tree collections using set operations such as union, intersection, and set difference.Results: On unweighted phylogenetic trees, TreeZip is able to compress Newick files in excess of 98%. On weighted phylogenetic trees, TreeZip is able to compress a Newick file by at least 73%. TreeZip can be combined with 7zip with little overhead, allowing space savings in excess of 99% (unweighted) and 92%(weighted). Unlike TreeZip, 7zip is not immune to branch rotations, and performs worse as the level of variability in the Newick string representation increases. Finally, since the TreeZip compressed text (TRZ) file contains all the semantic information in a collection of trees, we can easily filter and decompress a subset of trees of interest (such as the set of unique trees), or build the resulting consensus tree in a matter of seconds. We also show the ease of which set operations can be performed on TRZ files, at speeds quicker than those performed on Newick or 7zip compressed Newick files, and without loss of space savings.Conclusions: TreeZip is an efficient approach for compressing large collections of phylogenetic trees. The semantic and compact nature of the TRZ file allow it to be operated upon directly and quickly, without a need to decompress the original Newick file. We believe that TreeZip will be vital for compressing and archiving trees in the biological community. © 2011 Matthews and Williams; licensee BioMed Central Ltd.

  5. Tree decline and the future of Australian farmland biodiversity

    OpenAIRE

    Fischer, Joern; Zerger, Andre; Gibbons, Phil; Stott, Jenny; Law, Bradley S.

    2010-01-01

    Farmland biodiversity is greatly enhanced by the presence of trees. However, farmland trees are declining worldwide, including in North America, Central America, and parts of southern Europe. We show that tree decline and its likely consequences are particularly severe in Australia's temperate agricultural zone, which is a threatened ecoregion. Using field data on trees, remotely sensed imagery, and a demographic model for trees, we predict that by 2100, the number of trees on an average farm...

  6. Cafts: computer aided fault tree analysis

    International Nuclear Information System (INIS)

    Poucet, A.

    1985-01-01

    The fault tree technique has become a standard tool for the analysis of safety and reliability of complex system. In spite of the costs, which may be high for a complete and detailed analysis of a complex plant, the fault tree technique is popular and its benefits are fully recognized. Due to this applications of these codes have mostly been restricted to simple academic examples and rarely concern complex, real world systems. In this paper an interactive approach to fault tree construction is presented. The aim is not to replace the analyst, but to offer him an intelligent tool which can assist him in modeling complex systems. Using the CAFTS-method, the analyst interactively constructs a fault tree in two phases: (1) In a first phase he generates an overall failure logic structure of the system; the macrofault tree. In this phase, CAFTS features an expert system approach to assist the analyst. It makes use of a knowledge base containing generic rules on the behavior of subsystems and components; (2) In a second phase the macrofault tree is further refined and transformed in a fully detailed and quantified fault tree. In this phase a library of plant-specific component failure models is used

  7. A biophysical analysis of latitudinal tree line

    Science.gov (United States)

    Goetz, S. J.; Loranty, M. M.; Berner, L.; Jin, Y.; Randerson, J. T.

    2011-12-01

    Northern latitudinal tree line represents the interface between boreal forests and tundra ecosystems, and is the ecophysiological limit of tree recruitment and persistence. The transition between tundra and forest is typically gradual, occurring over tens to hundreds of kilometers. This gradient represents a substantial change in the biophysical properties of the earth surface, one that is particularly important in ecosystems that are snow covered for much of the year. Tree line is, however, commonly delineated by the point of the northern most tree, with no gradient between forested and non-forested ecosystems. As a consequence crisp delineations of tree line incorporated into models introduce error in surface radiation budgets due to inaccurate albedo representations. Errors in modeled carbon and water fluxes are likely as well. Here we use satellite observations to quantify several key biophysical properties across latitudinal tree line for a series of sites throughout the pan-boreal region We find decreases in NDVI and increases in albedo across the transition from boreal forest to tundra, as expected. However, in the absence of topographical barriers we find that these transitions can occur over upwards of 100 km, and that biophysical properties characteristic of tundra ecosystems can occur as far as 100 km south of tree line. This suggests that land surface models likely overestimate surface radiation budgets and carbon fluxes in the boreal biome. We discuss our results in the context of land surface models, noting specific examples from archived model runs.

  8. Atmospheric carbon reduction by urban trees

    International Nuclear Information System (INIS)

    Nowak, D.J.

    1993-01-01

    Trees, because they sequester atmospheric carbon through their growth process and conserve energy in urban areas, have been suggested as one means to combat increasing levels of atmospheric carbon. Analysis of the urban forest in Oakland, California (21% tree cover), reveals a tree carbon storage level of 11·0 metric tons/hectare. Trees in the area of the 1991 fire in Oakland stored approximately 14,500 metric tons of carbon, 10% of the total amount stored by Oakland's urban forest. National urban forest carbon storage in the United States (28% tree cover) is estimated at between 350 and 750 million metric tons. Establishment of 10 million urban trees annually over the next 10 years is estimated to sequester and offset the production of 363 million metric tons of carbon over the next 50 years-less than 1% of the estimated carbon emissions in the United States over the same time period. Advantages and limitations of managing urban trees to reduce atmospheric carbon are discussed. 36 refs., 2 figs., 3 tabs

  9. Reconciliation of Gene and Species Trees

    Directory of Open Access Journals (Sweden)

    L. Y. Rusin

    2014-01-01

    Full Text Available The first part of the paper briefly overviews the problem of gene and species trees reconciliation with the focus on defining and algorithmic construction of the evolutionary scenario. Basic ideas are discussed for the aspects of mapping definitions, costs of the mapping and evolutionary scenario, imposing time scales on a scenario, incorporating horizontal gene transfers, binarization and reconciliation of polytomous trees, and construction of species trees and scenarios. The review does not intend to cover the vast diversity of literature published on these subjects. Instead, the authors strived to overview the problem of the evolutionary scenario as a central concept in many areas of evolutionary research. The second part provides detailed mathematical proofs for the solutions of two problems: (i inferring a gene evolution along a species tree accounting for various types of evolutionary events and (ii trees reconciliation into a single species tree when only gene duplications and losses are allowed. All proposed algorithms have a cubic time complexity and are mathematically proved to find exact solutions. Solving algorithms for problem (ii can be naturally extended to incorporate horizontal transfers, other evolutionary events, and time scales on the species tree.

  10. Nodal distances for rooted phylogenetic trees.

    Science.gov (United States)

    Cardona, Gabriel; Llabrés, Mercè; Rosselló, Francesc; Valiente, Gabriel

    2010-08-01

    Dissimilarity measures for (possibly weighted) phylogenetic trees based on the comparison of their vectors of path lengths between pairs of taxa, have been present in the systematics literature since the early seventies. For rooted phylogenetic trees, however, these vectors can only separate non-weighted binary trees, and therefore these dissimilarity measures are metrics only on this class of rooted phylogenetic trees. In this paper we overcome this problem, by splitting in a suitable way each path length between two taxa into two lengths. We prove that the resulting splitted path lengths matrices single out arbitrary rooted phylogenetic trees with nested taxa and arcs weighted in the set of positive real numbers. This allows the definition of metrics on this general class of rooted phylogenetic trees by comparing these matrices through metrics in spaces M(n)(R) of real-valued n x n matrices. We conclude this paper by establishing some basic facts about the metrics for non-weighted phylogenetic trees defined in this way using L(p) metrics on M(n)(R), with p [epsilon] R(>0).

  11. National assessment of Tree City USA participation

    Science.gov (United States)

    Tree City USA is a national program that recognizes municipal commitment to community forestry. In return for meeting program requirements, Tree City USA participants expect social, economic, and/or environmental benefits. Understanding the geographic distribution and socioeconomic characteristics of Tree City USA communities at the national scale can offer insights into the motivations or barriers to program participation, and provide context for community forestry research at finer scales. In this study, researchers assessed patterns in Tree City USA participation for all U.S. communities with more than 2,500 people according to geography, community population size, and socioeconomic characteristics, such as income, education, and race. Nationally, 23.5% of communities studied were Tree City USA participants, and this accounted for 53.9% of the total population in these communities. Tree City USA participation rates varied substantially by U.S. region, but in each region participation rates were higher in larger communities, and long-term participants tended to be larger communities than more recent enrollees. In logistic regression models, owner occupancy rates were significant negative predictors of Tree City USA participation, education and percent white population were positive predictors in many U.S. regions, and inconsistent patterns were observed for income and population age. The findings indicate that communities with smaller populations, lower educat

  12. Topological and categorical properties of binary trees

    Directory of Open Access Journals (Sweden)

    H. Pajoohesh

    2008-04-01

    Full Text Available Binary trees are very useful tools in computer science for estimating the running time of so-called comparison based algorithms, algorithms in which every action is ultimately based on a prior comparison between two elements. For two given algorithms A and B where the decision tree of A is more balanced than that of B, it is known that the average and worst case times of A will be better than those of B, i.e., ₸A(n ≤₸B(n and TWA (n≤TWB (n. Thus the most balanced and the most imbalanced binary trees play a main role. Here we consider them as semilattices and characterize the most balanced and the most imbalanced binary trees by topological and categorical properties. Also we define the composition of binary trees as a commutative binary operation, *, such that for binary trees A and B, A * B is the binary tree obtained by attaching a copy of B to any leaf of A. We show that (T,* is a commutative po-monoid and investigate its properties.

  13. Evaluation of larch trees (Larix Mill., Pinaceae

    Directory of Open Access Journals (Sweden)

    Firsov Gennadii

    2016-12-01

    Full Text Available Peter the Great Botanical Garden of the Komarov Boranical Institute has 148 larch samples (Larix Mill., Pinaceae which represent 22 taxa. They are long-lived large trees, up to 200 years of age, representing the base for a forest stand of an arboretum and forming alleys in the oldest regular part of the Garden. The tallest trees reach 31,6 m (L. dahurica and 113 cm in diameter (L. decidua and L. dahurica. Due to the warming in the St. Petersburg area, there is a noticeable drying found on the trees' crowns. Based on the results of an inventory in 2015, 43 trees can be assigned to the first category; the other 105 trees suffer from drying of shoots, twigs and branches. The degree of drying corresponds with the age of trees. One of the possible reasons of the deterioration in the conditions of larch trees at the arboretum of the Komarov Botanical Institute may be the influence of the Phytophthora species. Soil research samples show presence of Phytophthora syringae (Berk. Kleb. in the risosphere of L. decidua. It is the first time, this species of Phytophthora has been discovered at the Peter the Great Botanical Garden.

  14. Urban tree effects on soil organic carbon.

    Directory of Open Access Journals (Sweden)

    Jill L Edmondson

    Full Text Available Urban trees sequester carbon into biomass and provide many ecosystem service benefits aboveground leading to worldwide tree planting schemes. Since soils hold ∼75% of ecosystem organic carbon, understanding the effect of urban trees on soil organic carbon (SOC and soil properties that underpin belowground ecosystem services is vital. We use an observational study to investigate effects of three important tree genera and mixed-species woodlands on soil properties (to 1 m depth compared to adjacent urban grasslands. Aboveground biomass and belowground ecosystem service provision by urban trees are found not to be directly coupled. Indeed, SOC enhancement relative to urban grasslands is genus-specific being highest under Fraxinus excelsior and Acer spp., but similar to grasslands under Quercus robur and mixed woodland. Tree cover type does not influence soil bulk density or C∶N ratio, properties which indicate the ability of soils to provide regulating ecosystem services such as nutrient cycling and flood mitigation. The trends observed in this study suggest that genus selection is important to maximise long-term SOC storage under urban trees, but emerging threats from genus-specific pathogens must also be considered.

  15. The Importance of Tree Height in Estimating Individual Tree Biomass While Considering Errors in Measurements and Allometric Models

    OpenAIRE

    Phalla, Thuch; Ota, Tetsuji; Mizoue, Nobuya; Kajisa, Tsuyoshi; Yoshida, Shigejiro; Vuthy, Ma; Heng, Sokh

    2018-01-01

    This study evaluated the uncertainty of individual tree biomass estimated by allometric models by both including and excluding tree height independently. Using two independent sets of measurements on the same trees, the errors in the measurement of diameter at breast height and tree height were quantified, and the uncertainty of individual tree biomass estimation caused by errors in measurement was calculated. For both allometric models, the uncertainties of the individual tree biomass estima...

  16. Comprehensive decision tree models in bioinformatics.

    Science.gov (United States)

    Stiglic, Gregor; Kocbek, Simon; Pernek, Igor; Kokol, Peter

    2012-01-01

    Classification is an important and widely used machine learning technique in bioinformatics. Researchers and other end-users of machine learning software often prefer to work with comprehensible models where knowledge extraction and explanation of reasoning behind the classification model are possible. This paper presents an extension to an existing machine learning environment and a study on visual tuning of decision tree classifiers. The motivation for this research comes from the need to build effective and easily interpretable decision tree models by so called one-button data mining approach where no parameter tuning is needed. To avoid bias in classification, no classification performance measure is used during the tuning of the model that is constrained exclusively by the dimensions of the produced decision tree. The proposed visual tuning of decision trees was evaluated on 40 datasets containing classical machine learning problems and 31 datasets from the field of bioinformatics. Although we did not expected significant differences in classification performance, the results demonstrate a significant increase of accuracy in less complex visually tuned decision trees. In contrast to classical machine learning benchmarking datasets, we observe higher accuracy gains in bioinformatics datasets. Additionally, a user study was carried out to confirm the assumption that the tree tuning times are significantly lower for the proposed method in comparison to manual tuning of the decision tree. The empirical results demonstrate that by building simple models constrained by predefined visual boundaries, one not only achieves good comprehensibility, but also very good classification performance that does not differ from usually more complex models built using default settings of the classical decision tree algorithm. In addition, our study demonstrates the suitability of visually tuned decision trees for datasets with binary class attributes and a high number of possibly

  17. Comprehensive decision tree models in bioinformatics.

    Directory of Open Access Journals (Sweden)

    Gregor Stiglic

    Full Text Available PURPOSE: Classification is an important and widely used machine learning technique in bioinformatics. Researchers and other end-users of machine learning software often prefer to work with comprehensible models where knowledge extraction and explanation of reasoning behind the classification model are possible. METHODS: This paper presents an extension to an existing machine learning environment and a study on visual tuning of decision tree classifiers. The motivation for this research comes from the need to build effective and easily interpretable decision tree models by so called one-button data mining approach where no parameter tuning is needed. To avoid bias in classification, no classification performance measure is used during the tuning of the model that is constrained exclusively by the dimensions of the produced decision tree. RESULTS: The proposed visual tuning of decision trees was evaluated on 40 datasets containing classical machine learning problems and 31 datasets from the field of bioinformatics. Although we did not expected significant differences in classification performance, the results demonstrate a significant increase of accuracy in less complex visually tuned decision trees. In contrast to classical machine learning benchmarking datasets, we observe higher accuracy gains in bioinformatics datasets. Additionally, a user study was carried out to confirm the assumption that the tree tuning times are significantly lower for the proposed method in comparison to manual tuning of the decision tree. CONCLUSIONS: The empirical results demonstrate that by building simple models constrained by predefined visual boundaries, one not only achieves good comprehensibility, but also very good classification performance that does not differ from usually more complex models built using default settings of the classical decision tree algorithm. In addition, our study demonstrates the suitability of visually tuned decision trees for datasets

  18. Fruit load governs transpiration of olive trees.

    Science.gov (United States)

    Bustan, Amnon; Dag, Arnon; Yermiyahu, Uri; Erel, Ran; Presnov, Eugene; Agam, Nurit; Kool, Dilia; Iwema, Joost; Zipori, Isaac; Ben-Gal, Alon

    2016-03-01

    We tested the hypothesis that whole-tree water consumption of olives (Olea europaea L.) is fruit load-dependent and investigated the driving physiological mechanisms. Fruit load was manipulated in mature olives grown in weighing-drainage lysimeters. Fruit was thinned or entirely removed from trees at three separate stages of growth: early, mid and late in the season. Tree-scale transpiration, calculated from lysimeter water balance, was found to be a function of fruit load, canopy size and weather conditions. Fruit removal caused an immediate decline in water consumption, measured as whole-plant transpiration normalized to tree size, which persisted until the end of the season. The later the execution of fruit removal, the greater was the response. The amount of water transpired by a fruit-loaded tree was found to be roughly 30% greater than that of an equivalent low- or nonyielding tree. The tree-scale response to fruit was reflected in stem water potential but was not mirrored in leaf-scale physiological measurements of stomatal conductance or photosynthesis. Trees with low or no fruit load had higher vegetative growth rates. However, no significant difference was observed in the overall aboveground dry biomass among groups, when fruit was included. This case, where carbon sources and sinks were both not limiting, suggests that the role of fruit on water consumption involves signaling and alterations in hydraulic properties of vascular tissues and tree organs. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  19. The ghosts of trees past: savanna trees create enduring legacies in plant species composition.

    Science.gov (United States)

    Stahlheber, Karen A; Crispin, Kimberly L; Anton, Cassidy; D'Antonio, Carla M

    2015-09-01

    Isolated trees in savannas worldwide are known to modify their local environment and interact directly with neighboring plants. Less is known about how related tree species differ in their impacts on surrounding communities, how the effects of trees vary between years, and how composition might change following loss of the tree. To address these knowledge gaps, we explored the following questions: How do savanna trees influence the surrounding composition of herbaceous plants? Is the influence of trees consistent across different species and years? How does this change following the death of the tree? We surveyed herbaceous species composition and environmental attributes surrounding living and dead evergreen and deciduous Quercus trees in California (USA) savannas across several years that differed in their total precipitation. Oak trees of all species created distinct, homogenous understory communities dominated by exotic grasses across several sites. The composition of the low-diversity understory communities showed less interannual variation than open grassland, despite a two-fold difference in precipitation between the driest and wettest year. Vegetation composition was correlated with variation in soil properties, which were strongly affected by trees. Oaks also influenced the communities beyond the edge of the crown, but this depended on site and oak species. Low-diversity understory communities persisted up to 43 years following the death of the tree. A gradual decline in the effect of trees on the physical, environment following death did not result in vegetation becoming more similar to open grassland over time. The presence of long-lasting legacies of past tree crowns highlights the difficulty of assigning control of the current distribution of herbaceous species in grassland to their contemporary environment.

  20. Mechanical stimuli regulate the allocation of biomass in trees: demonstration with young Prunus avium trees.

    Science.gov (United States)

    Coutand, Catherine; Dupraz, Christian; Jaouen, Gaëlle; Ploquin, Stéphane; Adam, Boris

    2008-06-01

    Plastic tree-shelters are increasingly used to protect tree seedlings against browsing animals and herbicide drifts. The biomass allocation in young seedlings of deciduous trees is highly disturbed by common plastic tree-shelters, resulting in poor root systems and reduced diameter growth of the trunk. The shelters have been improved by creating chimney-effect ventilation with holes drilled at the bottom, resulting in stimulated trunk diameter growth, but the root deficit has remained unchanged. An experiment was set up to elucidate the mechanisms behind the poor root growth of sheltered Prunus avium trees. Tree seedlings were grown either in natural windy conditions or in tree-shelters. Mechanical wind stimuli were suppressed in ten unsheltered trees by staking. Mechanical stimuli (bending) of the stem were applied in ten sheltered trees using an original mechanical device. Sheltered trees suffered from poor root growth, but sheltered bent trees largely recovered, showing that mechano-sensing is an important mechanism governing C allocation and the shoot-root balance. The use of a few artificial mechanical stimuli increased the biomass allocation towards the roots, as did natural wind sway. It was demonstrated that there was an acclimation of plants to the imposed strain. This study suggests that if mechanical stimuli are used to control plant growth, they should be applied at low frequency in order to be most effective. The impact on the functional equilibrium hypothesis that is used in many tree growth models is discussed. The consequence of the lack of mechanical stimuli should be incorporated in tree growth models when applied to environments protected from the wind (e.g. greenhouses, dense forests).

  1. Lateglacial environmental variability from Swiss tree rings

    DEFF Research Database (Denmark)

    Schaub, Matthias; Büntgen, Ulf; Kaiser, Klaus Felix

    2008-01-01

    Evidence of annually resolved environmental variations during the Allerød interstadial is presented using 81 fossil Scots pine tree-ring series from Gaenziloo and Landikon, near Zurich, Switzerland. The absolute age of the trees ranges between 11,920 and 10,610 14C BP, which was determined...... by wiggle-matching radiocarbon ages to the Cariaco 14C data set. From the two sites we created a composite floating Allerød chronology on the basis of their 632 years of overlap (r = 0.57), after individual spline detrending. Merging both data sets resulted in a Lateglacial tree-ring chronology covering...

  2. Fault tree analysis for vital area identification

    International Nuclear Information System (INIS)

    Varnado, G.B.; Ortiz, N.R.

    1978-01-01

    This paper discusses the use of fault tree analysis to identify those areas of nuclear fuel cycle facilities which must be protected to prevent acts of sabotage that could lead to sifnificant release of radioactive material. By proper manipulation of the fault trees for a plant, an analyst can identify vital areas in a manner consistent with regulatory definitions. This paper discusses the general procedures used in the analysis of any nuclear facility. In addition, a structured, generic approach to the development of the fault trees for nuclear power reactors is presented along with selected results of the application of the generic approach to several plants

  3. Algorithms for optimal dyadic decision trees

    Energy Technology Data Exchange (ETDEWEB)

    Hush, Don [Los Alamos National Laboratory; Porter, Reid [Los Alamos National Laboratory

    2009-01-01

    A new algorithm for constructing optimal dyadic decision trees was recently introduced, analyzed, and shown to be very effective for low dimensional data sets. This paper enhances and extends this algorithm by: introducing an adaptive grid search for the regularization parameter that guarantees optimal solutions for all relevant trees sizes, revising the core tree-building algorithm so that its run time is substantially smaller for most regularization parameter values on the grid, and incorporating new data structures and data pre-processing steps that provide significant run time enhancement in practice.

  4. {sup 137}Cs distribution in guava trees

    Energy Technology Data Exchange (ETDEWEB)

    Mosquera, B.; Veiga, R.; Mangia, L.; Carvalho, C.; Estellita, L.; Uzeda, D.; Facure, A.; Violini, B.; Anjos, R.M. [Universidade Federal Fluminense, Niteroi, RJ (Brazil). Inst. de Fisica

    2004-09-15

    This paper presents results of {sup 137}Cs concentration measured from a guava tree cultivated after the first decontamination work of one of the sites where the worst Brazilian radiological accident occurred. The present work aims to verify how the {sup 137}Cs is transported and distributed along the tropical trees. Bi-dimensional analyses of the radial distribution of {sup 137}Cs in the main trunk are also presented. Neither symmetrical nor homogeneous behaviors of the specific activity distribution in the tree rings were observed. (author)

  5. 137Cs distribution in guava trees

    International Nuclear Information System (INIS)

    Mosquera, B.; Veiga, R.; Mangia, L.; Carvalho, C.; Estellita, L.; Uzeda, D.; Facure, A.; Violini, B.; Anjos, R.M.

    2004-01-01

    This paper presents results of 137 Cs concentration measured from a guava tree cultivated after the first decontamination work of one of the sites where the worst Brazilian radiological accident occurred. The present work aims to verify how the 137 Cs is transported and distributed along the tropical trees. Bi-dimensional analyses of the radial distribution of 137 Cs in the main trunk are also presented. Neither symmetrical nor homogeneous behaviors of the specific activity distribution in the tree rings were observed. (author)

  6. Using fuzzy arithmetic in containment event trees

    International Nuclear Information System (INIS)

    Rivera, S.S.; Baron, Jorge H.

    2000-01-01

    The use of fuzzy arithmetic is proposed for the evaluation of containment event trees. Concepts such as improbable, very improbable, and so on, which are subjective by nature, are represented by fuzzy numbers. The quantitative evaluation of containment event trees is based on the extension principle, by which operations on real numbers are extended to operations on fuzzy numbers. Expert knowledge is considered as state of the base variable with a normal distribution, which is considered to represent the membership function. Finally, this paper presents results of an example calculation of a containment event tree for the CAREM-25 nuclear power plant, presently under detailed design stage at Argentina. (author)

  7. The decision tree approach to classification

    Science.gov (United States)

    Wu, C.; Landgrebe, D. A.; Swain, P. H.

    1975-01-01

    A class of multistage decision tree classifiers is proposed and studied relative to the classification of multispectral remotely sensed data. The decision tree classifiers are shown to have the potential for improving both the classification accuracy and the computation efficiency. Dimensionality in pattern recognition is discussed and two theorems on the lower bound of logic computation for multiclass classification are derived. The automatic or optimization approach is emphasized. Experimental results on real data are reported, which clearly demonstrate the usefulness of decision tree classifiers.

  8. IND - THE IND DECISION TREE PACKAGE

    Science.gov (United States)

    Buntine, W.

    1994-01-01

    A common approach to supervised classification and prediction in artificial intelligence and statistical pattern recognition is the use of decision trees. A tree is "grown" from data using a recursive partitioning algorithm to create a tree which has good prediction of classes on new data. Standard algorithms are CART (by Breiman Friedman, Olshen and Stone) and ID3 and its successor C4 (by Quinlan). As well as reimplementing parts of these algorithms and offering experimental control suites, IND also introduces Bayesian and MML methods and more sophisticated search in growing trees. These produce more accurate class probability estimates that are important in applications like diagnosis. IND is applicable to most data sets consisting of independent instances, each described by a fixed length vector of attribute values. An attribute value may be a number, one of a set of attribute specific symbols, or it may be omitted. One of the attributes is delegated the "target" and IND grows trees to predict the target. Prediction can then be done on new data or the decision tree printed out for inspection. IND provides a range of features and styles with convenience for the casual user as well as fine-tuning for the advanced user or those interested in research. IND can be operated in a CART-like mode (but without regression trees, surrogate splits or multivariate splits), and in a mode like the early version of C4. Advanced features allow more extensive search, interactive control and display of tree growing, and Bayesian and MML algorithms for tree pruning and smoothing. These often produce more accurate class probability estimates at the leaves. IND also comes with a comprehensive experimental control suite. IND consists of four basic kinds of routines: data manipulation routines, tree generation routines, tree testing routines, and tree display routines. The data manipulation routines are used to partition a single large data set into smaller training and test sets. The

  9. Diagnostic of dry rot in living trees

    International Nuclear Information System (INIS)

    Schaetzler, H.P.

    1978-01-01

    The γ-desorption method has been used in the early diagnosis of dry rot in trees. The attenuation of a 60 keV γ-beam ( 241 Am) has been measured on eleven healthy spruce disks. It is seen that early diagnostic of rotten trees is limited by natural density variation of the wood itself, but for a 95% confidence level that the wood is diseased, a tree must have an average of less than 0.59 g./cm 3 . (Auth/C.F.)

  10. Species tree inference by minimizing deep coalescences.

    Science.gov (United States)

    Than, Cuong; Nakhleh, Luay

    2009-09-01

    In a 1997 seminal paper, W. Maddison proposed minimizing deep coalescences, or MDC, as an optimization criterion for inferring the species tree from a set of incongruent gene trees, assuming the incongruence is exclusively due to lineage sorting. In a subsequent paper, Maddison and Knowles provided and implemented a search heuristic for optimizing the MDC criterion, given a set of gene trees. However, the heuristic is not guaranteed to compute optimal solutions, and its hill-climbing search makes it slow in practice. In this paper, we provide two exact solutions to the problem of inferring the species tree from a set of gene trees under the MDC criterion. In other words, our solutions are guaranteed to find the tree that minimizes the total number of deep coalescences from a set of gene trees. One solution is based on a novel integer linear programming (ILP) formulation, and another is based on a simple dynamic programming (DP) approach. Powerful ILP solvers, such as CPLEX, make the first solution appealing, particularly for very large-scale instances of the problem, whereas the DP-based solution eliminates dependence on proprietary tools, and its simplicity makes it easy to integrate with other genomic events that may cause gene tree incongruence. Using the exact solutions, we analyze a data set of 106 loci from eight yeast species, a data set of 268 loci from eight Apicomplexan species, and several simulated data sets. We show that the MDC criterion provides very accurate estimates of the species tree topologies, and that our solutions are very fast, thus allowing for the accurate analysis of genome-scale data sets. Further, the efficiency of the solutions allow for quick exploration of sub-optimal solutions, which is important for a parsimony-based criterion such as MDC, as we show. We show that searching for the species tree in the compatibility graph of the clusters induced by the gene trees may be sufficient in practice, a finding that helps ameliorate the

  11. Species tree inference by minimizing deep coalescences.

    Directory of Open Access Journals (Sweden)

    Cuong Than

    2009-09-01

    Full Text Available In a 1997 seminal paper, W. Maddison proposed minimizing deep coalescences, or MDC, as an optimization criterion for inferring the species tree from a set of incongruent gene trees, assuming the incongruence is exclusively due to lineage sorting. In a subsequent paper, Maddison and Knowles provided and implemented a search heuristic for optimizing the MDC criterion, given a set of gene trees. However, the heuristic is not guaranteed to compute optimal solutions, and its hill-climbing search makes it slow in practice. In this paper, we provide two exact solutions to the problem of inferring the species tree from a set of gene trees under the MDC criterion. In other words, our solutions are guaranteed to find the tree that minimizes the total number of deep coalescences from a set of gene trees. One solution is based on a novel integer linear programming (ILP formulation, and another is based on a simple dynamic programming (DP approach. Powerful ILP solvers, such as CPLEX, make the first solution appealing, particularly for very large-scale instances of the problem, whereas the DP-based solution eliminates dependence on proprietary tools, and its simplicity makes it easy to integrate with other genomic events that may cause gene tree incongruence. Using the exact solutions, we analyze a data set of 106 loci from eight yeast species, a data set of 268 loci from eight Apicomplexan species, and several simulated data sets. We show that the MDC criterion provides very accurate estimates of the species tree topologies, and that our solutions are very fast, thus allowing for the accurate analysis of genome-scale data sets. Further, the efficiency of the solutions allow for quick exploration of sub-optimal solutions, which is important for a parsimony-based criterion such as MDC, as we show. We show that searching for the species tree in the compatibility graph of the clusters induced by the gene trees may be sufficient in practice, a finding that helps

  12. Medical History: Compiling Your Medical Family Tree

    Science.gov (United States)

    ... you collect information about your relatives, respect their right to confidentiality. You might want to consult family documents, such as existing family trees, baby books, old letters, obituaries or records from places of ...

  13. Seeing the forest for the trees

    DEFF Research Database (Denmark)

    Ribbons, Relena Rose

    to determine tree species effects and attribute N cycling processes to the abundances of functional genes. At EP571, western red cedar forest floor nitrogen transformation rates differed from Douglas-fir (Pseudotsuga menziesii), Sitka spruce (Picea sitchensis), and western hemlock (Tsuga heterophylla), which...... corresponded with western red cedar (Thuja plicata) had highest abundances of bacterial 16S and amoA AOA genes. A manipulative mesocosm (the Rhizotron) in Wales was used to determine how seedlings species mixtures and monocultures influenced tree growth, soil physical properties and soil microbial community......Tree species influence soils above and belowground communities through leaf litter and root inputs. Soil microbial communities can directly influence tree growth and development through processes such as decomposition of leaves, and indirectly through chemical transformation of nutrients in soils...

  14. Steiner trees for fixed orientation metrics

    DEFF Research Database (Denmark)

    Brazil, Marcus; Zachariasen, Martin

    2009-01-01

    We consider the problem of constructing Steiner minimum trees for a metric defined by a polygonal unit circle (corresponding to s = 2 weighted legal orientations in the plane). A linear-time algorithm to enumerate all angle configurations for degree three Steiner points is given. We provide...... a simple proof that the angle configuration for a Steiner point extends to all Steiner points in a full Steiner minimum tree, such that at most six orientations suffice for edges in a full Steiner minimum tree. We show that the concept of canonical forms originally introduced for the uniform orientation...... metric generalises to the fixed orientation metric. Finally, we give an O(s n) time algorithm to compute a Steiner minimum tree for a given full Steiner topology with n terminal leaves....

  15. Tree agency and urban forest governance

    DEFF Research Database (Denmark)

    Konijnendijk, Cecil Cornelis

    2016-01-01

    Purpose – The role of urban forests and urban trees in creating vibrant and resilient cities is widely recognised. Urban forest governance as the strategic decision and rule making for urban tree resources is no longer solely the domain of governmental actors, but occurs rather often as network...... governance also involving businesses and civic society. However, governance theory usually does not consider the role of non-human agency, which can be considered problematic due to, for example, the important role of urban trees in place making. The purpose of this paper is to provide further insight...... into the importance of considering tree agency in governance. Design/methodology/approach – Taking an environmental governance and actor network theory perspective, the paper presents a critical view of current urban forest governance, extending the perspective to include not only a wide range of human actors...

  16. Patterns of Storm Injury and Tree Response

    Science.gov (United States)

    Kevin Smith; Walter Shortle; Kenneth Dudzik

    2001-01-01

    The ice storm of January 1998 in the northeastern United States and adjacent Canada was an extreme example of severe weather that injures trees every year. Broken branches, split branch forks, and snapped stems are all examples of storm injury.

  17. PRIA 3 Fee Determination Decision Tree

    Science.gov (United States)

    The PRIA 3 decision tree will help applicants requesting a pesticide registration or certain tolerance action to accurately identify the category of their application and the amount of the required fee before they submit the application.

  18. RE-Powering’s Electronic Decision Tree

    Science.gov (United States)

    Developed by US EPA's RE-Powering America's Land Initiative, the RE-Powering Decision Trees tool guides interested parties through a process to screen sites for their suitability for solar photovoltaics or wind installations

  19. Speech Recognition Using Randomized Relational Decision Trees

    National Research Council Canada - National Science Library

    Amit, Yali

    1999-01-01

    .... This implies that we recognize words as units, without recognizing their subcomponents. Multiple randomized decision trees are used to access the large pool of acoustic events in a systematic manner and are aggregated to produce the classifier.

  20. On some trees having partition dimension four

    Science.gov (United States)

    Ida Bagus Kade Puja Arimbawa, K.; Baskoro, Edy Tri

    2016-02-01

    In 1998, G. Chartrand, E. Salehi and P. Zhang introduced the notion of partition dimension of a graph. Since then, the study of this graph parameter has received much attention. A number of results have been obtained to know the values of partition dimensions of various classes of graphs. However, for some particular classes of graphs, finding of their partition dimensions is still not completely solved, for instances a class of general tree. In this paper, we study the properties of trees having partition dimension 4. In particular, we show that, for olive trees O(n), its partition dimension is equal to 4 if and only if 8 ≤ n ≤ 17. We also characterize all centipede trees having partition dimension 4.

  1. Airway Tree Extraction with Locally Optimal Paths

    DEFF Research Database (Denmark)

    Lo, Pechin Chien Pau; Sporring, Jon; Pedersen, Jesper Johannes Holst

    2009-01-01

    This paper proposes a method to extract the airway tree from CT images by continually extending the tree with locally optimal paths. This is in contrast to commonly used region growing based approaches that only search the space of the immediate neighbors. The result is a much more robust method...... for tree extraction that can overcome local occlusions. The cost function for obtaining the optimal paths takes into account of an airway probability map as well as measures of airway shape and orientation derived from multi-scale Hessian eigen analysis on the airway probability. Significant improvements...... were achieved compared to a region growing based method, with up to 36% longer trees at a slight increase of false positive rate....

  2. Tree ring record chronicles major Mesoamerican droughts

    Science.gov (United States)

    Tretkoff, Ernie

    2011-05-01

    A new tree ring record chronicles major Mesoamerican droughts in the past millennium that may have contributed to the decline of some pre-Hispanic civilizations. Although there is other evidence of droughts during the past millennium, the paleoclimate record had gaps. Stahle et al. used core samples from Montezuma bald cypress trees found in Barranca de Amealco, Querétaro, Mexico, to develop a 1238-year tree ring chronology. They reconstructed the soil moisture record from the tree ring growth patterns. The new record provides the first dated, annually resolved climate record for Mexico and Central America spanning this time period.(Geophysical Research Letters, doi:10.1029/2010GL046472, 2011)

  3. Dynamic travel time estimation using regression trees.

    Science.gov (United States)

    2008-10-01

    This report presents a methodology for travel time estimation by using regression trees. The dissemination of travel time information has become crucial for effective traffic management, especially under congested road conditions. In the absence of c...

  4. Solar and Wind Site Screening Decision Trees

    Science.gov (United States)

    EPA and NREL created a decision tree to guide state and local governments and other stakeholders through a process for screening sites for their suitability for future redevelopment with solar photovoltaic (PV) energy and wind energy.

  5. BOREAS TE-22 Tree Ring Data

    Data.gov (United States)

    National Aeronautics and Space Administration — Tree core data from several sites in the SSA and NSA collected in order to perform historical growth studies and relate the information to their modeling activities....

  6. BOREAS TE-22 Tree Ring Data

    Data.gov (United States)

    National Aeronautics and Space Administration — ABSTRACT: Tree core data from several sites in the SSA and NSA collected in order to perform historical growth studies and relate the information to their modeling...

  7. Tree-grass interactions in savannas

    CSIR Research Space (South Africa)

    Scholes, RJ

    1997-01-01

    Full Text Available Savannas occur where trees and grasses interact to create a biome that is neither grassland nor forest. Woody and gramineous plants interact by many mechanisms, some negative (competition) and some positive (facilitation). The strength and sign...

  8. Effects of nurse trees, spacing, and tree species on biomass production in mixed forest plantations

    DEFF Research Database (Denmark)

    Nord-Larsen, Thomas; Meilby, Henrik

    2016-01-01

    Growing concern about increasing concentrations of greenhouse gases in the atmosphere, and resulting global climate change, has spurred a growing demand for renewable energy. In this study, we hypothesized that a nurse tree crop may provide additional early yields of biomass for fuel, while...... was in most cases reduced due to competition. However, provided timely thinning of nurse trees, the qualitative development of the trees will allow for long-term timber production....

  9. SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees

    OpenAIRE

    Beccati, Alan; Gerken, Jan; Quast, Christian; Yilmaz, Pelin; Glöckner, Frank Oliver

    2017-01-01

    Background Phylogenetic trees are an important tool to study the evolutionary relationships among organisms. The huge amount of available taxa poses difficulties in their interactive visualization. This hampers the interaction with the users to provide feedback for the further improvement of the taxonomic framework. Results The SILVA Tree Viewer is a web application designed for visualizing large phylogenetic trees without requiring the download of any software tool or data files. The SILVA T...

  10. Trees and networks before and after Darwin

    Directory of Open Access Journals (Sweden)

    Ragan Mark A

    2009-11-01

    Full Text Available Abstract It is well-known that Charles Darwin sketched abstract trees of relationship in his 1837 notebook, and depicted a tree in the Origin of Species (1859. Here I attempt to place Darwin's trees in historical context. By the mid-Eighteenth century the Great Chain of Being was increasingly seen to be an inadequate description of order in nature, and by about 1780 it had been largely abandoned without a satisfactory alternative having been agreed upon. In 1750 Donati described aquatic and terrestrial organisms as forming a network, and a few years later Buffon depicted a network of genealogical relationships among breeds of dogs. In 1764 Bonnet asked whether the Chain might actually branch at certain points, and in 1766 Pallas proposed that the gradations among organisms resemble a tree with a compound trunk, perhaps not unlike the tree of animal life later depicted by Eichwald. Other trees were presented by Augier in 1801 and by Lamarck in 1809 and 1815, the latter two assuming a transmutation of species over time. Elaborate networks of affinities among plants and among animals were depicted in the late Eighteenth and very early Nineteenth centuries. In the two decades immediately prior to 1837, so-called affinities and/or analogies among organisms were represented by diverse geometric figures. Series of plant and animal fossils in successive geological strata were represented as trees in a popular textbook from 1840, while in 1858 Bronn presented a system of animals, as evidenced by the fossil record, in a form of a tree. Darwin's 1859 tree and its subsequent elaborations by Haeckel came to be accepted in many but not all areas of biological sciences, while network diagrams were used in others. Beginning in the early 1960s trees were inferred from protein and nucleic acid sequences, but networks were re-introduced in the mid-1990s to represent lateral genetic transfer, increasingly regarded as a fundamental mode of evolution at least for

  11. Efficient chaining of seeds in ordered trees

    OpenAIRE

    Allali, Julien; Chauve, Cédric; Ferraro, Pascal; Gaillard, Anne-Laure

    2010-01-01

    International audience; We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent with respect to postfix order and ancestrality. This problem is a natural extension of a similar problem for sequences, and has applications in computational biology, such as mining a database of RNA secondary structures. For the chaining problem with a set of m constant size seeds, we describe...

  12. GRFT - Genetic Records Family Tree Web Applet.

    Science.gov (United States)

    Pimentel, Samuel; Walbot, Virginia; Fernandes, John

    2011-01-01

    Current software for storing and displaying records of genetic crosses does not provide an easy way to determine the lineage of an individual. The genetic records family tree (GRFT) applet processes records of genetic crosses and allows researchers to quickly visualize lineages using a family tree construct and to access other information from these records using any Internet browser. Users select from three display features: (1) a family tree view which displays a color-coded family tree for an individual, (2) a sequential list of crosses, and (3) a list of crosses matching user-defined search criteria. Each feature contains options to specify the number of records shown and the latter two contain an option to filter results by the owner of the cross. The family tree feature is interactive, displaying a popup box with genetic information when the user mouses over an individual and allowing the user to draw a new tree by clicking on any individual in the current tree. The applet is written in JavaScript and reads genetic records from a tab-delimited text file on the server, so it is cross-platform, can be accessed by anyone with an Internet connection, and supports almost instantaneous generation of new trees and table lists. Researchers can use the tool with their own genetic cross records for any sexually reproducing organism. No additional software is required and with only minor modifications to the script, researchers can add their own custom columns. GRFT's speed, versatility, and low overhead make it an effective and innovative visualization method for genetic records. A sample tool is available at http://stanford.edu/walbot/grft-sample.html.

  13. Tree-ring anomalies in Toona ciliata

    OpenAIRE

    Heinrich, Ingo; Banks, John Charles Gripper

    2006-01-01

    New increment core samples of Toona ciliata collected in the Australian tropics and subtropics compared to already existing material from the Upper Kangaroo Valley, near Sydney exhibit distinct differences in tree-ring structures. This necessitated a closer examination of the wood anatomy, possible false rings and the species’ crossdating capacity in northeast Australia. During tree-ring analysis two growth anomalies (extensive zones of narrow and indistinct rings) and three types of false ri...

  14. TPM: Tree-Particle-Mesh code

    Science.gov (United States)

    Bode, Paul

    2013-05-01

    TPM carries out collisionless (dark matter) cosmological N-body simulations, evolving a system of N particles as they move under their mutual gravitational interaction. It combines aspects of both Tree and Particle-Mesh algorithms. After the global PM forces are calculated, spatially distinct regions above a given density contrast are located; the tree code calculates the gravitational interactions inside these denser objects at higher spatial and temporal resolution. The code is parallel and uses MPI for message passing.

  15. Parallel object-oriented decision tree system

    Science.gov (United States)

    Kamath,; Chandrika, Cantu-Paz [Dublin, CA; Erick, [Oakland, CA

    2006-02-28

    A data mining decision tree system that uncovers patterns, associations, anomalies, and other statistically significant structures in data by reading and displaying data files, extracting relevant features for each of the objects, and using a method of recognizing patterns among the objects based upon object features through a decision tree that reads the data, sorts the data if necessary, determines the best manner to split the data into subsets according to some criterion, and splits the data.

  16. Aboveground tree biomass statistics for Maine: 1982

    Science.gov (United States)

    Eric H. Wharton; Thomas S. Frieswyk; Anne M. Malley

    1985-01-01

    Traditional measures of volume inadequately describe the total aboveground wood resource. The 1980-82 inventory of Maine included estimates of aboveground tree biomass on timberland. There are nearly 1,504.4 million green tons of wood and bark in all trees above the ground level, or 88.2 green tons per acre of timberland. Most of the biomass is in growing stock, but 49...

  17. Genomics-assisted breeding in fruit trees

    OpenAIRE

    Iwata, Hiroyoshi; Minamikawa, Mai F.; Kajiya-Kanegae, Hiromi; Ishimori, Motoyuki; Hayashi, Takeshi

    2016-01-01

    Recent advancements in genomic analysis technologies have opened up new avenues to promote the efficiency of plant breeding. Novel genomics-based approaches for plant breeding and genetics research, such as genome-wide association studies (GWAS) and genomic selection (GS), are useful, especially in fruit tree breeding. The breeding of fruit trees is hindered by their long generation time, large plant size, long juvenile phase, and the necessity to wait for the physiological maturity of the pl...

  18. A Conceptual Tree of Laser Propulsion

    International Nuclear Information System (INIS)

    Pakhomov, Andrew V.; Sinko, John E.

    2008-01-01

    An original attempt to develop a conceptual tree for laser propulsion is offered. The tree provides a systematic view for practically all possible laser propulsion concepts and all inter-conceptual links, based on propellant phases and phase transfers. It also helps to see which fields of laser propulsion have been already thoroughly explored, where the next effort must be applied, and which paths should be taken with proper care or avoided entirely

  19. On the complexity of labeled oriented trees

    Indian Academy of Sciences (India)

    If TP is a tree we call it a labeled oriented tree or LOT and P a. LOT-presentation. The 2-complex modeled on P will be called a LOG (or LOT)-complex. A labeled oriented interval or LOI is a LOT where the underlying graph is an interval. For example the LOI depicted in figure 1 encodes the presentation. P = 〈a, b, c, d, e, ...

  20. Shade Trees Spatial Distribution and Its Effect on Grains and Beverage Quality of Shaded Coffee Trees

    Directory of Open Access Journals (Sweden)

    Francisco José da Silva Neto

    2018-01-01

    Full Text Available Shading coffee trees has gained importance, especially among smallholders, as an option to improve the products’ quality, therefore acquiring place at the specialty coffee market, where consumers are willing to give bonus for quality. This work aims to evaluate the influence of shade trees’ spatial distribution among coffee trees’ agronomic characteristics, yield, and beans and cup quality of shaded coffee trees. The experimental design consisted of completely randomized blocks with six repetitions and four treatments: coffee trees on shade trees planting rows, distant one meter from the trunk; coffee trees on shade trees planting row, distant six meters from the trunk; and coffee plants between the rows of shade trees, parallel to the previous treatments. The parameters analyzed were plant height, canopy diameter, plagiotropic branches’ length, yield, coffee fruits’ phenological stage, ripe cherries’ Brix degree, percentage of black, unripe, and insect damaged beans, bean size, and beverage quality. Shade trees quickened coffee fruits’ phenological stage of coffee trees nearest to them. This point also showed the best beverage quality, except for overripe fruits. The remaining parameters evaluated were not affected by shade trees’ spatial distribution.