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Sample records for trans-specific inversion polymorphisms

  1. Expression and trans-specific polymorphism of self-incompatibility RNases in coffea (Rubiaceae.

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    Michael D Nowak

    Full Text Available Self-incompatibility (SI is widespread in the angiosperms, but identifying the biochemical components of SI mechanisms has proven to be difficult in most lineages. Coffea (coffee; Rubiaceae is a genus of old-world tropical understory trees in which the vast majority of diploid species utilize a mechanism of gametophytic self-incompatibility (GSI. The S-RNase GSI system was one of the first SI mechanisms to be biochemically characterized, and likely represents the ancestral Eudicot condition as evidenced by its functional characterization in both asterid (Solanaceae, Plantaginaceae and rosid (Rosaceae lineages. The S-RNase GSI mechanism employs the activity of class III RNase T2 proteins to terminate the growth of "self" pollen tubes. Here, we investigate the mechanism of Coffea GSI and specifically examine the potential for homology to S-RNase GSI by sequencing class III RNase T2 genes in populations of 14 African and Madagascan Coffea species and the closely related self-compatible species Psilanthus ebracteolatus. Phylogenetic analyses of these sequences aligned to a diverse sample of plant RNase T2 genes show that the Coffea genome contains at least three class III RNase T2 genes. Patterns of tissue-specific gene expression identify one of these RNase T2 genes as the putative Coffea S-RNase gene. We show that populations of SI Coffea are remarkably polymorphic for putative S-RNase alleles, and exhibit a persistent pattern of trans-specific polymorphism characteristic of all S-RNase genes previously isolated from GSI Eudicot lineages. We thus conclude that Coffea GSI is most likely homologous to the classic Eudicot S-RNase system, which was retained since the divergence of the Rubiaceae lineage from an ancient SI Eudicot ancestor, nearly 90 million years ago.

  2. Polytene chromosome map and inversion polymorphism in Drosophila mediopunctata

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    Galina Ananina

    2002-07-01

    Full Text Available Drosophila mediopunctata belongs to the tripunctata group, and is one of the commonest Drosophila species collected in some places in Brazil, especially in the winter. A standard map of the polytene chromosomes is presented. The breakpoints of the naturally occurring chromosomal rearrangements are marked on the map. The distribution of breaking points through the chromosomes of D. mediopunctata is apparently non-random. Chromosomes X, II and IV show inversion polymorphisms. Chromosome II is the most polymorphic, with 17 inversions, 8 inversions in the distal region and 9 in the proximal region. Chromosome X has four different gene arrangements, while chromosome IV has only two.

  3. Adaptive Role of Inversion Polymorphism of Drosophila subobscura in Lead Stressed Environment.

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    Bojan Kenig

    Full Text Available Local adaptation to environmental stress at different levels of genetic polymorphism in various plants and animals has been documented through evolution of heavy metal tolerance. We used samples of Drosophila subobscura populations from two differently polluted environments to analyze the change of chromosomal inversion polymorphism as genetic marker during laboratory exposure to lead. Exposure to environmental contamination can affect the genetic content within a particular inversion and produce targets for selection in populations from different environments. The aims were to discover whether the inversion polymorphism is shaped by the local natural environments, and if lead as a selection pressure would cause adaptive divergence of two populations during the multigenerational laboratory experiment. The results showed that populations retain signatures from past contamination events, and that heavy metal pollution can cause adaptive changes in population. Differences in inversion polymorphism between the two populations increased over generations under lead contamination in the laboratory. The inversion polymorphism of population originating from the more polluted natural environment was more stable during the experiment, both under conditions with and without lead. Therefore, results showed that inversion polymorphism as a genetic marker reflects a strong signature of adaptation to the local environment, and that historical demographic events and selection are important for both prediction of evolutionary potential and long-term viability of natural populations.

  4. Nested Inversion Polymorphisms Predispose Chromosome 22q11.2 to Meiotic Rearrangements

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    Demaerel, Wolfram; Hestand, Matthew S.; Vergaelen, Elfi; Swillen, Ann; López-Sánchez, Marcos; Pérez-Jurado, Luis A.; McDonald-Mcginn, Donna M.; Zackai, Elaine; Emanuel, Beverly S.; Morrow, Bernice E.; Breckpot, Jeroen; Devriendt, Koenraad; Vermeesch, Joris R.; Antshel, Kevin M.; Arango, Celso; Armando, Marco; Bassett, Anne S.; Bearden, Carrie E.; Boot, Erik; Bravo-Sanchez, Marta; Breetvelt, Elemi; Busa, Tiffany; Butcher, Nancy J.; Campbell, Linda E.; Carmel, Miri; Chow, Eva W C; Crowley, T. Blaine; Cubells, Joseph; Cutler, David; Demaerel, Wolfram; Digilio, Maria Cristina; Duijff, Sasja; Eliez, Stephan; Emanuel, Beverly S.; Epstein, Michael P.; Evers, Rens; Fernandez Garcia-Moya, Luis; Fiksinski, Ania; Fraguas, David; Fremont, Wanda; Fritsch, Rosemarie; Garcia-Minaur, Sixto; Golden, Aaron; Gothelf, Doron; Guo, Tingwei; Gur, Ruben C.; Gur, Raquel E.; Heine-Suner, Damian; Hestand, Matthew; Hooper, Stephen R.; Kates, Wendy R.; Kushan, Leila; Laorden-Nieto, Alejandra; Maeder, Johanna; Marino, Bruno; Marshall, Christian R.; McCabe, Kathryn; McDonald-Mcginn, Donna M.; Michaelovosky, Elena; Morrow, Bernice E.; Moss, Edward; Mulle, Jennifer; Murphy, Declan; Murphy, Kieran C.; Murphy, Clodagh M.; Niarchou, Maria; Ornstein, Claudia; Owen, Michael J; Philip, Nicole; Repetto, Gabriela M.; Schneider, Maude; Shashi, Vandana; Simon, Tony J.; Swillen, Ann; Tassone, Flora; Unolt, Marta; Van Amelsvoort, Therese; van den Bree, Marianne B M; Van Duin, Esther; Vergaelen, Elfi; Vermeesch, Joris R.; Vicari, Stefano; Vingerhoets, Claudia; Vorstman, Jacob; Warren, Steve; Weinberger, Ronnie; Weisman, Omri; Weizman, Abraham; Zackai, Elaine; Zhang, Zhengdong; Zwick, Michael

    2017-01-01

    Inversion polymorphisms between low-copy repeats (LCRs) might predispose chromosomes to meiotic non-allelic homologous recombination (NAHR) events and thus lead to genomic disorders. However, for the 22q11.2 deletion syndrome (22q11.2DS), the most common genomic disorder, no such inversions have

  5. Stable chromosomal inversion polymorphisms and insecticide resistance in the malaria vector mosquito Anopheles gambiae (Diptera: Culicidae).

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    Brooke, B D; Hunt, R H; Chandre, F; Carnevale, P; Coetzee, M

    2002-07-01

    Anopheles gambiae Giles has been implicated as a major vector of malaria in Africa. A number of paracentric chromosomal inversions have been observed as polymorphisms in wild and laboratory populations of this species. These polymorphisms have been used to demonstrate the existence of five reproductive units in West African populations that are currently described as incipient species. They have also been correlated with various behavioral characteristics such as adaptation to aridity and feeding preference and have been associated with insecticide resistance. Two paracentric inversions namely 2La and 2Rb are highly ubiquitous in the wild and laboratory populations sampled. Both inversions are easily conserved during laboratory colonization of wild material and one shows significant positive heterosis with respect to Hardy-Weinberg proportions. Inversion 2La has previously been associated with dieldrin resistance and inversion 2Rb shows an association with DDT resistance based on this study. The stability and maintenance of these inversions as polymorphisms provides an explanation for the transmission and continued presence of DDT and dieldrin resistance in a laboratory strain of An. gambiae in the absence of insecticide selection pressure. This effect may also be operational in wild populations. Stable inversion polymorphism also provides a possible mechanism for the continual inheritance of suitable genetic factors that otherwise compromise the fitness of genetically modified malaria vector mosquitoes.

  6. Chromosomal inversion polymorphism in Drosophila mediopunctata: seasonal, altitudinal, and latitudinal variation

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    Ananina Galina

    2004-01-01

    Full Text Available The most polymorphic chromosome for inversions in Drosophila mediopunctata is the chromosome II, where 17 inversions have been found, eight of which occurring in the distal region and nine in the proximal region. We present an analysis of the chromosome II inversion polymorphism with respect to seasonal, altitudinal and latitudinal variation. In D. mediopunctata from the Parque Nacional do Itatiaia (southeastern Brazil, the frequencies of three of the distal inversions (namely DA, DS, and DP vary seasonally. These inversions also show altitudinal clines in their frequencies. This microgeographic pattern was not observed on a macrogeographic scale. D. mediopunctata from Porto Alegre are less polymorphic for inversions than other populations, the most remarkable reduction occurring in the proximal region of chromosome II. There is a considerable difference between D. mediopunctata from Campinas and specimens from Serra do Japi, which are separated by only 50 km. In contrast, D. mediopunctata from Serra do Japi are much more similar to specimens from the Parque Nacional do Itatiaia, which is 200 km far.

  7. Human Xq28 Inversion Polymorphism: From Sex Linkage to Genomics--A Genetic Mother Lode

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    Kirby, Cait S.; Kolber, Natalie; Salih Almohaidi, Asmaa M.; Bierwert, Lou Ann; Saunders, Lori; Williams, Steven; Merritt, Robert

    2016-01-01

    An inversion polymorphism of the filamin and emerin genes at the tip of the long arm of the human X-chromosome serves as the basis of an investigative laboratory in which students learn something new about their own genomes. Long, nearly identical inverted repeats flanking the filamin and emerin genes illustrate how repetitive elements can lead to…

  8. GNBP domain of Anopheles darlingi: are polymorphic inversions and gene variation related to adaptive evolution?

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    Bridi, L C; Rafael, M S

    2016-02-01

    Anopheles darlingi is the main malaria vector in humans in South America. In the Amazon basin, it lives along the banks of rivers and lakes, which responds to the annual hydrological cycle (dry season and rainy season). In these breeding sites, the larvae of this mosquito feed on decomposing organic and microorganisms, which can be pathogenic and trigger the activation of innate immune system pathways, such as proteins Gram-negative binding protein (GNBP). Such environmental changes affect the occurrence of polymorphic inversions especially at the heterozygote frequency, which confer adaptative advantage compared to homozygous inversions. We mapped the GNBP probe to the An. darlingi 2Rd inversion by fluorescent in situ hybridization (FISH), which was a good indicator of the GNBP immune response related to the chromosomal polymorphic inversions and adaptative evolution. To better understand the evolutionary relations and time of divergence of the GNBP of An. darlingi, we compared it with nine other mosquito GNBPs. The results of the phylogenetic analysis of the GNBP sequence between the species of mosquitoes demonstrated three clades. Clade I and II included the GNBPB5 sequence, and clade III the sequence of GNBPB1. Most of these sequences of GNBP analyzed were homologous with that of subfamily B, including that of An. gambiae (87 %), therefore suggesting that GNBP of An. darling belongs to subfamily B. This work helps us understand the role of inversion polymorphism in evolution of An. darlingi.

  9. Discovery of human inversion polymorphisms by comparative analysis of human and chimpanzee DNA sequence assemblies.

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    Lars Feuk

    2005-10-01

    Full Text Available With a draft genome-sequence assembly for the chimpanzee available, it is now possible to perform genome-wide analyses to identify, at a submicroscopic level, structural rearrangements that have occurred between chimpanzees and humans. The goal of this study was to investigate chromosomal regions that are inverted between the chimpanzee and human genomes. Using the net alignments for the builds of the human and chimpanzee genome assemblies, we identified a total of 1,576 putative regions of inverted orientation, covering more than 154 mega-bases of DNA. The DNA segments are distributed throughout the genome and range from 23 base pairs to 62 mega-bases in length. For the 66 inversions more than 25 kilobases (kb in length, 75% were flanked on one or both sides by (often unrelated segmental duplications. Using PCR and fluorescence in situ hybridization we experimentally validated 23 of 27 (85% semi-randomly chosen regions; the largest novel inversion confirmed was 4.3 mega-bases at human Chromosome 7p14. Gorilla was used as an out-group to assign ancestral status to the variants. All experimentally validated inversion regions were then assayed against a panel of human samples and three of the 23 (13% regions were found to be polymorphic in the human genome. These polymorphic inversions include 730 kb (at 7p22, 13 kb (at 7q11, and 1 kb (at 16q24 fragments with a 5%, 30%, and 48% minor allele frequency, respectively. Our results suggest that inversions are an important source of variation in primate genome evolution. The finding of at least three novel inversion polymorphisms in humans indicates this type of structural variation may be a more common feature of our genome than previously realized.

  10. INVERSION POLYMORPHISM, LONGEVITY, AND BODY SIZE IN A NATURAL POPULATION OF DROSOPHILA BUZZATII.

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    Rodriguez, Constantina; Fanara, Juan J; Hasson, Esteban

    1999-04-01

    In this study we present the results of an analysis of differential longevity associated with Drosophila buzzatii second chromosome inversion karyotypes based on the assessment of more than 1000 individuals collected in a natural population. Comparisons of inversion frequencies between emerged and bait-collected flies showed not only that inversion arrangements were associated with differential longevity, but also that selection was sex specific. Because each individual fly was scored for thorax length and karyotype, we were able to show that longevity selection favoring larger flies coupled with the average effect of inversions on thorax length can account for the change of inversion frequencies due to longevity in females. The observed genotypic-by-sex interaction could be an important mechanism involved in the maintenance of the polymorphism. Arrangement 2Jz 3 , which was shown to impaired fecundity in two independent previous studies, exhibited a positive effect on longevity. This pattern of negative pleiotropy may be another plausible mechanism accounting for the maintenance of the polymorphism. © 1999 The Society for the Study of Evolution.

  11. A standard photomap of ovarian nurse cell chromosomes and inversion polymorphism in Anopheles beklemishevi.

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    Artemov, Gleb N; Gordeev, Mikhail I; Kokhanenko, Alina A; Moskaev, Anton V; Velichevskaya, Alena I; Stegniy, Vladimir N; Sharakhov, Igor V; Sharakhova, Maria V

    2018-03-27

    Anopheles beklemishevi is a member of the Maculipennis group of malaria mosquitoes that has the most northern distribution among other members of the group. Although a cytogenetic map for the larval salivary gland chromosomes of this species has been developed, a high-quality standard cytogenetic photomap that enables genomics and population genetics studies of this mosquito at the adult stage is still lacking. In this study, a cytogenetic map for the polytene chromosomes of An. beklemishevi from ovarian nurse cells was developed using high-resolution digital imaging from field collected mosquitoes. PCR-amplified DNA probes for fluorescence in situ hybridization (FISH) were designed based on the genome of An. atroparvus. The DNA probe obtained by microdissection procedures from the breakpoint region was labelled in a DOP-PCR reaction. Population analysis was performed on 371 specimens collected in 18 locations. We report the development of a high-quality standard photomap for the polytene chromosomes from ovarian nurse cells of An. beklemishevi. To confirm the suitability of the map for physical mapping, several PCR-amplified probes were mapped to the chromosomes of An. beklemishevi using FISH. In addition, we identified and mapped DNA probes to flanking regions of the breakpoints of two inversions on chromosome X of this species. Inversion polymorphism was determined in 13 geographically distant populations of An. beklemishevi. Four polymorphic inversions were detected. The positions of common chromosomal inversions were indicated on the map. The study constructed a standard photomap for ovarian nurse cell chromosomes of An. beklemishevi and tested its suitability for physical genome mapping and population studies. Cytogenetic analysis determined inversion polymorphism in natural populations of An. beklemishevi related to this species' adaptation.

  12. Nested Inversion Polymorphisms Predispose Chromosome 22q11.2 to Meiotic Rearrangements.

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    Demaerel, Wolfram; Hestand, Matthew S; Vergaelen, Elfi; Swillen, Ann; López-Sánchez, Marcos; Pérez-Jurado, Luis A; McDonald-McGinn, Donna M; Zackai, Elaine; Emanuel, Beverly S; Morrow, Bernice E; Breckpot, Jeroen; Devriendt, Koenraad; Vermeesch, Joris R

    2017-10-05

    Inversion polymorphisms between low-copy repeats (LCRs) might predispose chromosomes to meiotic non-allelic homologous recombination (NAHR) events and thus lead to genomic disorders. However, for the 22q11.2 deletion syndrome (22q11.2DS), the most common genomic disorder, no such inversions have been uncovered as of yet. Using fiber-FISH, we demonstrate that parents transmitting the de novo 3 Mb LCR22A-D 22q11.2 deletion, the reciprocal duplication, and the smaller 1.5 Mb LCR22A-B 22q11.2 deletion carry inversions of LCR22B-D or LCR22C-D. Hence, the inversions predispose chromosome 22q11.2 to meiotic rearrangements and increase the individual risk for transmitting rearrangements. Interestingly, the inversions are nested or flanking rather than coinciding with the deletion or duplication sizes. This finding raises the possibility that inversions are a prerequisite not only for 22q11.2 rearrangements but also for all NAHR-mediated genomic disorders. Copyright © 2017. Published by Elsevier Inc.

  13. A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation.

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    David B Lowry

    2010-09-01

    Full Text Available The role of chromosomal inversions in adaptation and speciation is controversial. Historically, inversions were thought to contribute to these processes either by directly causing hybrid sterility or by facilitating the maintenance of co-adapted gene complexes. Because inversions suppress recombination when heterozygous, a recently proposed local adaptation mechanism predicts that they will spread if they capture alleles at multiple loci involved in divergent adaptation to contrasting environments. Many empirical studies have found inversion polymorphisms linked to putatively adaptive phenotypes or distributed along environmental clines. However, direct involvement of an inversion in local adaptation and consequent ecological reproductive isolation has not to our knowledge been demonstrated in nature. In this study, we discovered that a chromosomal inversion polymorphism is geographically widespread, and we test the extent to which it contributes to adaptation and reproductive isolation under natural field conditions. Replicated crosses between the prezygotically reproductively isolated annual and perennial ecotypes of the yellow monkeyflower, Mimulus guttatus, revealed that alternative chromosomal inversion arrangements are associated with life-history divergence over thousands of kilometers across North America. The inversion polymorphism affected adaptive flowering time divergence and other morphological traits in all replicated crosses between four pairs of annual and perennial populations. To determine if the inversion contributes to adaptation and reproductive isolation in natural populations, we conducted a novel reciprocal transplant experiment involving outbred lines, where alternative arrangements of the inversion were reciprocally introgressed into the genetic backgrounds of each ecotype. Our results demonstrate for the first time in nature the contribution of an inversion to adaptation, an annual/perennial life-history shift, and

  14. Inversion polymorphism in some natural populations of Drosophila pseudoobscura from central Mexico

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    Salceda Víctor M.

    2007-01-01

    Full Text Available Samples of D. pseudoobscura were taken in seventeen localities in Central Mexico inside the parallels 18o - 20o N, with the purpose of determine the chromosomal polymorphism in the third of the different populations of this species. From each captured female a single larva of its offspring was taken, its salivary glands extracted and stained with a solution of aceto orcein to observe the polytene chromosomes. From these smears the corresponding karyotype of each larva was determined, keeping a record of them. With the information gathered the relative frequency of each one of the fourteen different inversions found was calculated. A grand total of 1894 third chromosomes were analyzed. The fourteen different inversions found are equivalent to a 34.1 % of the total chromosomal variation of the species. The most abundant inversions found were: TL 50.6 %, CU 27.2 5, SC 9.1 % and EP 5.5 %; the remaining ten inversions detected are in general grounds rare ones with variable relative frequencies depending on the locality. Analysis of the predominant inversions for each population was done. The presence of West-East gradients is reported, even if in cases not so well defined, since as one moves in a particular direction the ups and downs in relative frequency for the alternating pairs TL-CU; TL-SC in the western populations and TL-CU in the eastern ones were observed. The assignment of each population to a particular race was also done, and such a way we were able to recognize three different races coexisting in the area of study.

  15. Colonization of America by Drosophila subobscura: Experiment in natural populations that supports the adaptive role of chromosomal-inversion polymorphism

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    Prevosti, Antonio; Ribo, Griselda; Serra, Luis; Aguade, Montserrat; Balaña, Joan; Monclus, Maria; Mestres, Francisco

    1988-01-01

    North America and South America have recently been colonized by the Palearctic species Drosophila subobscura. This double colonization offers a rare opportunity for evolutionary studies. Correlations between chromosomal arrangement frequencies and latitude were calculated for the colonizing populations. Signs of these correlations are highly coincident with those found in the Old World. These results provide experimental support for the adaptive value of the chromosomal-inversion polymorphism...

  16. Chromosome banding in Amphibia. XXI. Inversion polymorphism and multiple nucleolus organizer regions in Agalychnis callidryas (Anura, Hylidae).

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    Schmid, M; Feichtinger, W; Weimer, R; Mais, C; Bolaños, F; León, P

    1995-01-01

    Cytogenetic analyses were performed on several populations of the Central American tree frog Agalychnis callidryas, using conventional methods and banding techniques. The karyotype of this species is distinguished by an inversion polymorphism in chromosome 9, which is either submetacentric or telocentric. The populations examined are in Hardy-Weinberg equilibrium with respect to the two alternative morphs of chromosome 9. This is the first report of the occurrence of an intrapopulational chromosomal inversion polymorphism in the order Anura. In male meiosis, the two chromosomes 9 form a bivalent exhibiting a ring-like pairing configuration with terminal chiasmata in both arms, regardless of whether the paired homologs are heteromorphic or homomorphic. Furthermore, individual specimens of A. callidryas exhibit one or two unexpected 18S + 28S ribosomal RNA gene clusters, in addition to the standard nucleolus organizers. The chromosomal localization of these extra nucleolus organizers is identical in all metaphases from the same specimen and shows a specific intraindividual pattern. The karyotype evolution in the phyllomedusine hylids, the structure of the various classes of heterochromatin, and the occurrence and possible origin of the rare inversion polymorphisms and multiple nucleolus organizers in A. callidryas and a few other amphibian species are discussed.

  17. Fine mapping of shattering locus Br2 reveals a putative chromosomal inversion polymorphism between the two lineages of Aegilops tauschii.

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    Zhang, Zhengzhi; Zhu, Huilan; Gill, Bikram S; Li, Wanlong

    2015-04-01

    This work laid the foundation for cloning of shattering gene Br2 and provided first line of evidence that two major Aegilops tauschii lineages are differentiated by an inversion polymorphism. Chromosome inversions often accompany population differentiation and capture local adaptation during speciation. Aegilops tauschii, the D-genome donor species of hexaploid wheat, consists of two genetically isolated lineages, L1 and L2, but little is known about the genetic mechanisms underlying the population differentiation in this diploid species. During fine mapping of the shattering gene Br2 using a large F2 population derived from a cross between TA1604 (an L1 accession) and AL8/78 (an L2 accession), we found contrasting patterns of crossover distribution in the Br2 interval and neighboring regions despite the high local gene synteny with Brachypodium distachyon and rice. Br2 was localized in a 0.08-cM interval, and 13 marker loci formed a block, where single-crossovers were completely suppressed, but double-crossovers were enriched with a recombination rate of ~11 cM/Mb. In contrast, in a neighboring region no double-crossover was recovered, but single-crossover rate reached 24 cM/Mb, which is much higher than the genome-wide average. This result suggests a putative inversion polymorphism between the parental lines in the Br2 region. Genotyping using the markers from the Br2 region divided a collection of 55 randomly sampled A. tauschii accessions into two major groups, and they are largely genetically isolated. The two groups correspond to the L1 and L2 lineages based on their geographic distribution patterns. This provides first evidence that inversions may underlie the evolution of A. tauschii lineages. The presence of inter-lineage inversions may complicate map-based cloning in A. tauschii and transfer of useful traits to wheat.

  18. Detailed analysis of inversions predicted between two human genomes: errors, real polymorphisms, and their origin and population distribution.

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    Vicente-Salvador, David; Puig, Marta; Gayà-Vidal, Magdalena; Pacheco, Sarai; Giner-Delgado, Carla; Noguera, Isaac; Izquierdo, David; Martínez-Fundichely, Alexander; Ruiz-Herrera, Aurora; Estivill, Xavier; Aguado, Cristina; Lucas-Lledó, José Ignacio; Cáceres, Mario

    2017-02-01

    The growing catalogue of structural variants in humans often overlooks inversions as one of the most difficult types of variation to study, even though they affect phenotypic traits in diverse organisms. Here, we have analysed in detail 90 inversions predicted from the comparison of two independently assembled human genomes: the reference genome (NCBI36/HG18) and HuRef. Surprisingly, we found that two thirds of these predictions (62) represent errors either in assembly comparison or in one of the assemblies, including 27 misassembled regions in HG18. Next, we validated 22 of the remaining 28 potential polymorphic inversions using different PCR techniques and characterized their breakpoints and ancestral state. In addition, we determined experimentally the derived allele frequency in Europeans for 17 inversions (DAF = 0.01-0.80), as well as the distribution in 14 worldwide populations for 12 of them based on the 1000 Genomes Project data. Among the validated inversions, nine have inverted repeats (IRs) at their breakpoints, and two show nucleotide variation patterns consistent with a recurrent origin. Conversely, inversions without IRs have a unique origin and almost all of them show deletions or insertions at the breakpoints in the derived allele mediated by microhomology sequences, which highlights the importance of mechanisms like FoSTeS/MMBIR in the generation of complex rearrangements in the human genome. Finally, we found several inversions located within genes and at least one candidate to be positively selected in Africa. Thus, our study emphasizes the importance of careful analysis and validation of large-scale genomic predictions to extract reliable biological conclusions. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  19. The Idea Is Good, but…: Failure to Replicate Associations of Oxytocinergic Polymorphisms with Face-Inversion in the N170.

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    Aisha J L Munk

    Full Text Available In event-related potentials, the N170 manifests itself especially in reaction to faces. In the healthy population, face-inversion leads to stronger negative amplitudes and prolonged latencies of the N170, effects not being present in patients with autism-spectrum-disorder (ASD. ASD has frequently been associated with differences in oxytocinergic neurotransmission. This ERP-study aimed to investigate the face-inversion effect in association with oxytocinergic candidate genes. It was expected that risk-allele-carriers of the oxytocin-receptor-gene-polymorphism (rs53576 and of CD38 (rs379863 responded similar to upright and inverted faces as persons with ASD. Additionally, reactions to different facial emotional expressions were studied. As there have been difficulties with replications of those molecular genetic association studies, we aimed to replicate our findings in a second study.Seventy-two male subjects in the first-, and seventy-eight young male subjects in the replication-study conducted a face-inversion-paradigm, while recording EEG. DNA was extracted from buccal cells.Results revealed stronger N170-amplitudes and longer latencies in reaction to inverted faces in comparison to upright ones. Furthermore, effects of emotion on N170 were evident. Those effects were present in the first and in the second study. Whereas we found molecular-genetic associations of oxytocinergic polymorphisms with the N170 in the first study, we failed to do so in the replication sample.Results indicate that a deeper theoretical understanding of this research-field is needed, in order to generate possible explanations for these findings. Results, furthermore, support the hypotheses that success of reproducibility is correlated with strength of lower original p-values and larger effect sizes in the original study.

  20. Host blood meals and chromosomal inversion polymorphism in Anopheles arabiensis in the Baringo District of Kenya.

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    Mnzava, A E; Mutinga, M J; Staak, C

    1994-12-01

    Studies were carried out in the villages of Kapkuikui and Maji-Ndege in the Loboi area of Baringo District, Kenya, to obtain baseline data on species identification of the Anopheles gambiae group, their feeding and resting behavior, and their frequencies of chromosomal inversions. This was carried out towards predicting the effect of introducing permethrin-impregnated cloths or other intervention measures. In this study, Anopheles arabiensis was identified as the only species of the An. gambiae group. This species contained 2 inversions, 2Rb and 3Ra, occurring at frequencies ranging from 55 to 60%, and from 5 to 11%, respectively. There was no evidence for nonrandom mating. Indoor- and outdoor-collected samples were significantly different in respect of inversion 3Ra in one village and in the distribution of the different sources of blood meals in both areas. In these villages, 37% of indoor-resting mosquitoes fed outside before entering houses to rest.

  1. Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms

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    Zapata, Luis; Ding, Jia; Willing, Eva-Maria; Hartwig, Benjamin; Bezdan, Daniela; Jiao, Wen-Biao; Patel, Vipul; Velikkakam James, Geo; Koornneef, Maarten; Ossowski, Stephan; Schneeberger, Korbinian

    2016-01-01

    Resequencing or reference-based assemblies reveal large parts of the small-scale sequence variation. However, they typically fail to separate such local variation into colinear and rearranged variation, because they usually do not recover the complement of large-scale rearrangements, including transpositions and inversions. Besides the availability of hundreds of genomes of diverse Arabidopsis thaliana accessions, there is so far only one full-length assembled genome: the reference sequence. We have assembled 117 Mb of the A. thaliana Landsberg erecta (Ler) genome into five chromosome-equivalent sequences using a combination of short Illumina reads, long PacBio reads, and linkage information. Whole-genome comparison against the reference sequence revealed 564 transpositions and 47 inversions comprising ∼3.6 Mb, in addition to 4.1 Mb of nonreference sequence, mostly originating from duplications. Although rearranged regions are not different in local divergence from colinear regions, they are drastically depleted for meiotic recombination in heterozygotes. Using a 1.2-Mb inversion as an example, we show that such rearrangement-mediated reduction of meiotic recombination can lead to genetically isolated haplotypes in the worldwide population of A. thaliana. Moreover, we found 105 single-copy genes, which were only present in the reference sequence or the Ler assembly, and 334 single-copy orthologs, which showed an additional copy in only one of the genomes. To our knowledge, this work gives first insights into the degree and type of variation, which will be revealed once complete assemblies will replace resequencing or other reference-dependent methods. PMID:27354520

  2. 'I am not a man': Trans-specific barriers and facilitators to PrEP acceptability among transgender women.

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    Sevelius, Jae M; Keatley, JoAnne; Calma, Nikki; Arnold, Emily

    2016-01-01

    The frequent conflation of transgender ('trans') women with 'men who have sex with men (MSM)' in HIV prevention obscures trans women's unique gender identities, social and behavioural vulnerabilities, and their disproportionately high rates of HIV infection. Pre-exposure prophylaxis (PrEP) is an efficacious biomedical HIV prevention approach. However, trans women are underrepresented in PrEP research, and are often aggregated with MSM without consideration for their unique positions within sociocultural contexts. This study examined PrEP acceptability among trans women via three focus groups and nine individual interviews (total N = 30) in San Francisco. While knowledge of PrEP was low, interest was relatively high once participants were informed. Due to past negative healthcare experiences, ability to obtain PrEP from a trans-competent provider was cited as essential to PrEP uptake and adherence. Participants noted that PrEP could address situations in which trans women experience reduced power to negotiate safer sex, including sex work. Trans-specific barriers included lack of trans-inclusive marketing of PrEP, prioritisation of hormone use, and medical mistrust due to transphobia. Findings underscore the importance of disaggregating trans women from MSM in HIV prevention strategies to mitigate disparate risk among this highly vulnerable population.

  3. Anopheles arabiensis and An. gambiae chromosomal inversion polymorphism, feeding and resting behaviour in relation to insecticide house-spraying in Tanzania.

    Science.gov (United States)

    Mnzava, A E; Rwegoshora, R T; Wilkes, T J; Tanner, M; Curtis, C F

    1995-07-01

    Differential responses of the mosquitoes Anopheles arabiensis and An. gambiae sensu stricto to house-spraying with DDT or lambda-cyhalothrin were evaluated in relation to chromosomal inversion polymorphism, feeding and resting behaviour of these malaria vectors in Tanzania. Blood-fed mosquitoes from pit traps outdoors, exit traps on windows and indoor-resting catches were identified cytogenetically and the chromosomal inversion frequencies compared between samples and species. Their outdoor-resting behaviour was assessed by a mark-release-recapture experiment and by determining the proportion of freshly blood-fed individuals in exit traps. The source of bloodmeals was analysed by an ELISA method. Endophagic females of An. arabiensis were more likely than those of An.gambiae to exit from a house on the night of blood-feeding. Only in one out of three villages was there evidence that chromosomally distinct individuals within a species had different preferences for resting sites. There were indications, but not conclusive evidence, that mosquitoes caught indoors or outdoors had a tendency to return to the same type of resting site. In villages sprayed with either insecticide, the mean age of the vector populations was greatly reduced, compared with those in the unsprayed villages. An.arabiensis females exited from DDT sprayed houses after blood-feeding, whereas with lambda-cyhalothrin those exiting were mostly unfed and there was a decline in the human blood index. The excitorepellency of DDT was perceived as a disadvantage, whereas lambda-cyhalothrin apparently had more impact on malaria transmission by An.arabiensis.

  4. Trans-specific gene silencing of acetyl-CoA carboxylase in a root-parasitic plant.

    Science.gov (United States)

    Bandaranayake, Pradeepa C G; Yoder, John I

    2013-05-01

    Parasitic species of the family Orobanchaceae are devastating agricultural pests in many parts of the world. The control of weedy Orobanchaceae spp. is challenging, particularly due to the highly coordinated life cycles of the parasite and host plants. Although host genetic resistance often provides the foundation of plant pathogen management, few genes that confer resistance to root parasites have been identified and incorporated into crop species. Members of the family Orobanchaceae acquire water, nutrients, macromolecules, and oligonucleotides from host plants through haustoria that connect parasite and host plant roots. We are evaluating a resistance strategy based on using interfering RNA (RNAi) that is made in the host but inhibitory in the parasite as a parasite-derived oligonucleotide toxin. Sequences from the cytosolic acetyl-CoA carboxylase (ACCase) gene from Triphysaria versicolor were cloned in hairpin conformation and introduced into Medicago truncatula roots by Agrobacterium rhizogenes transformation. Transgenic roots were recovered for four of five ACCase constructions and infected with T. versicolor against parasitic weeds. In all cases, Triphysaria root viability was reduced up to 80% when parasitizing a host root bearing the hairpin ACCase. Triphysaria root growth was recovered by exogenous application of malonate. Reverse-transcriptase polymerase chain reaction (RT-PCR) showed that ACCase transcript levels were dramatically decreased in Triphysaria spp. parasitizing transgenic Medicago roots. Northern blot analysis identified a 21-nucleotide, ACCase-specific RNA in transgenic M. truncatula and in T. versicolor attached to them. One hairpin ACCase construction was lethal to Medicago spp. unless grown in media supplemented with malonate. Quantitative RT-PCR showed that the Medicago ACCase was inhibited by the Triphysaria ACCase RNAi. This work shows that ACCase is an effective target for inactivation in parasitic plants by trans-specific gene

  5. Single nucleotide polymorphism rs17849071 G/T in the PIK3CA gene is inversely associated with follicular thyroid cancer and PIK3CA amplification.

    Directory of Open Access Journals (Sweden)

    Jeffrey C Xing

    Full Text Available The proto-oncogene PIK3CA has been well studied for its activating mutations and genomic amplifications but not single nucleotide polymorphism (SNP in thyroid cancer. We investigated SNP rs17849071 (minor allele G and major allele T in PIK3CA in thyroid tumors in 503 subjects by PCR and sequencing of a region of intron 9 carrying this SNP. This SNP was found in both normal and thyroid tumor tissues as well as in different generations of a studied family, confirming it to be a germline genetic event in thyroid tumor patients. In comparison with normal subjects, a dramatically lower prevalence of the heterozygous genotype G/T at rs17849071 was found in patients with follicular thyroid cancer (FTC. Specifically, rs17849071G/T was found in 15% (18/117 normal subjects vs. 1.3% (1/77 FTC patients, with an odds ratio of 0.07 (95% CI 0.01-0.55; P = 0.001. This represents a 93% risk reduction for FTC with this SNP. In contrast, no difference was seen with benign thyroid neoplasms in which the prevalence of rs17849071G/T was 13.1% (17/130, with an odds ratio of 0.83 (95% CI 0.40-1.69; P = 0.72. There was a trend of lower prevalences of rs17849071G/T and odds ratio in other types of thyroid cancer without statistical significance. We also found an interesting inverse relationship of rs17849071G/T with PIK3CA amplification. With copy number ≥4 defined as copy gain, 2.9% (1/34 rs17849071G/T vs. 19.0% (67/352 rs17849071T/T cases displayed PIK3CA amplification (P = 0.01. Conversely, 1.5% (1/68 cases with PIK3CA amplification vs. 10.4% (33/318 cases without PIK3CA amplification harbored rs17849071G/T (P = 0.01. This provides an explanation for the reciprocal relationship of rs17849071G/T with FTC, since PIK3CA amplification is an important oncogenic mechanism in thyroid cancer, particularly FTC. Thus, the present study uncovers an interesting phenomenon that rs17849071G/T is protective against FTC possibly through preventing PIK3CA amplifications.

  6. Inverse photoemission

    International Nuclear Information System (INIS)

    Namatame, Hirofumi; Taniguchi, Masaki

    1994-01-01

    Photoelectron spectroscopy is regarded as the most powerful means since it can measure almost perfectly the occupied electron state. On the other hand, inverse photoelectron spectroscopy is the technique for measuring unoccupied electron state by using the inverse process of photoelectron spectroscopy, and in principle, the similar experiment to photoelectron spectroscopy becomes feasible. The development of the experimental technology for inverse photoelectron spectroscopy has been carried out energetically by many research groups so far. At present, the heightening of resolution of inverse photoelectron spectroscopy, the development of inverse photoelectron spectroscope in which light energy is variable and so on are carried out. But the inverse photoelectron spectroscope for vacuum ultraviolet region is not on the market. In this report, the principle of inverse photoelectron spectroscopy and the present state of the spectroscope are described, and the direction of the development hereafter is groped. As the experimental equipment, electron guns, light detectors and so on are explained. As the examples of the experiment, the inverse photoelectron spectroscopy of semimagnetic semiconductors and resonance inverse photoelectron spectroscopy are reported. (K.I.)

  7. Inverse Limits

    CERN Document Server

    Ingram, WT

    2012-01-01

    Inverse limits provide a powerful tool for constructing complicated spaces from simple ones. They also turn the study of a dynamical system consisting of a space and a self-map into a study of a (likely more complicated) space and a self-homeomorphism. In four chapters along with an appendix containing background material the authors develop the theory of inverse limits. The book begins with an introduction through inverse limits on [0,1] before moving to a general treatment of the subject. Special topics in continuum theory complete the book. Although it is not a book on dynamics, the influen

  8. Family Polymorphism

    DEFF Research Database (Denmark)

    Ernst, Erik

    2001-01-01

    This paper takes polymorphism to the multi-object level. Traditional inheritance, polymorphism, and late binding interact nicely to provide both flexibility and safety — when a method is invoked on an object via a polymorphic reference, late binding ensures that we get the appropriate implementat......This paper takes polymorphism to the multi-object level. Traditional inheritance, polymorphism, and late binding interact nicely to provide both flexibility and safety — when a method is invoked on an object via a polymorphic reference, late binding ensures that we get the appropriate...

  9. Accommodating chromosome inversions in linkage analysis.

    Science.gov (United States)

    Chen, Gary K; Slaten, Erin; Ophoff, Roel A; Lange, Kenneth

    2006-08-01

    This work develops a population-genetics model for polymorphic chromosome inversions. The model precisely describes how an inversion changes the nature of and approach to linkage equilibrium. The work also describes algorithms and software for allele-frequency estimation and linkage analysis in the presence of an inversion. The linkage algorithms implemented in the software package Mendel estimate recombination parameters and calculate the posterior probability that each pedigree member carries the inversion. Application of Mendel to eight Centre d'Etude du Polymorphisme Humain pedigrees in a region containing a common inversion on 8p23 illustrates its potential for providing more-precise estimates of the location of an unmapped marker or trait gene. Our expanded cytogenetic analysis of these families further identifies inversion carriers and increases the evidence of linkage.

  10. Homogeneity of common cosmopolitan inversion frequencies in ...

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Genetics; Volume 84; Issue 2 ... Research Article Volume 84 Issue 2 August 2005 pp 173-178 ... To understand the genetic properties of Asian D. melanogaster populations, we initiated a population genetic study of chromosome inversion polymorphisms in hitherto unanalysed population ...

  11. Inverse problems of geophysics

    International Nuclear Information System (INIS)

    Yanovskaya, T.B.

    2003-07-01

    This report gives an overview and the mathematical formulation of geophysical inverse problems. General principles of statistical estimation are explained. The maximum likelihood and least square fit methods, the Backus-Gilbert method and general approaches for solving inverse problems are discussed. General formulations of linearized inverse problems, singular value decomposition and properties of pseudo-inverse solutions are given

  12. Fuzzy Inverse Compactness

    Directory of Open Access Journals (Sweden)

    Halis Aygün

    2008-01-01

    Full Text Available We introduce definitions of fuzzy inverse compactness, fuzzy inverse countable compactness, and fuzzy inverse Lindelöfness on arbitrary -fuzzy sets in -fuzzy topological spaces. We prove that the proposed definitions are good extensions of the corresponding concepts in ordinary topology and obtain different characterizations of fuzzy inverse compactness.

  13. Inverse Kinematics using Quaternions

    DEFF Research Database (Denmark)

    Henriksen, Knud; Erleben, Kenny; Engell-Nørregård, Morten

    In this project I describe the status of inverse kinematics research, with the focus firmly on the methods that solve the core problem. An overview of the different methods are presented Three common methods used in inverse kinematics computation have been chosen as subject for closer inspection....

  14. Inverse logarithmic potential problem

    CERN Document Server

    Cherednichenko, V G

    1996-01-01

    The Inverse and Ill-Posed Problems Series is a series of monographs publishing postgraduate level information on inverse and ill-posed problems for an international readership of professional scientists and researchers. The series aims to publish works which involve both theory and applications in, e.g., physics, medicine, geophysics, acoustics, electrodynamics, tomography, and ecology.

  15. Gravity inversion code

    International Nuclear Information System (INIS)

    Burkhard, N.R.

    1979-01-01

    The gravity inversion code applies stabilized linear inverse theory to determine the topography of a subsurface density anomaly from Bouguer gravity data. The gravity inversion program consists of four source codes: SEARCH, TREND, INVERT, and AVERAGE. TREND and INVERT are used iteratively to converge on a solution. SEARCH forms the input gravity data files for Nevada Test Site data. AVERAGE performs a covariance analysis on the solution. This document describes the necessary input files and the proper operation of the code. 2 figures, 2 tables

  16. The genetic content of chromosomal inversions across a wide latitudinal gradient.

    Directory of Open Access Journals (Sweden)

    Pedro Simões

    Full Text Available There is increasing evidence regarding the role of chromosomal inversions in relevant biological processes such as local adaptation and speciation. A classic example of the adaptive role of chromosomal polymorphisms is given by the clines of inversion frequencies in Drosophila subobscura, repeatable across continents. Nevertheless, not much is known about the molecular variation associated with these polymorphisms. We characterized the genetic content of ca. 600 individuals from nine European populations following a latitudinal gradient by analysing 19 microsatellite loci from two autosomes (J and U and the sex chromosome (A, taking into account their chromosomal inversions. Our results clearly demonstrate the molecular genetic uniformity within a given chromosomal inversion across a large latitudinal gradient, particularly from Groningen (Netherlands in the north to Málaga (Spain in the south, experiencing highly diverse environmental conditions. This low genetic differentiation within the same gene arrangement across the nine European populations is consistent with the local adaptation hypothesis for th evolutionof chromosomal polymorphisms. We also show the effective role of chromosomal inversions in maintaining different genetic pools within these inverted genomic regions even in the presence of high gene flow. Inversions represent thus an important barrier to gene flux and can help maintain specific allelic combinations with positive effects on fitness. Consistent patterns of microsatellite allele-inversion linkage disequilibrium particularly in loci within inversions were also observed. Finally, we identified areas within inversions presenting clinal variation that might be under selection.

  17. Sharp spatially constrained inversion

    DEFF Research Database (Denmark)

    Vignoli, Giulio G.; Fiandaca, Gianluca G.; Christiansen, Anders Vest C A.V.C.

    2013-01-01

    We present sharp reconstruction of multi-layer models using a spatially constrained inversion with minimum gradient support regularization. In particular, its application to airborne electromagnetic data is discussed. Airborne surveys produce extremely large datasets, traditionally inverted...... by using smoothly varying 1D models. Smoothness is a result of the regularization constraints applied to address the inversion ill-posedness. The standard Occam-type regularized multi-layer inversion produces results where boundaries between layers are smeared. The sharp regularization overcomes...... inversions are compared against classical smooth results and available boreholes. With the focusing approach, the obtained blocky results agree with the underlying geology and allow for easier interpretation by the end-user....

  18. Inverse planning IMRT

    International Nuclear Information System (INIS)

    Rosenwald, J.-C.

    2008-01-01

    The lecture addressed the following topics: Optimizing radiotherapy dose distribution; IMRT contributes to optimization of energy deposition; Inverse vs direct planning; Main steps of IMRT; Background of inverse planning; General principle of inverse planning; The 3 main components of IMRT inverse planning; The simplest cost function (deviation from prescribed dose); The driving variable : the beamlet intensity; Minimizing a 'cost function' (or 'objective function') - the walker (or skier) analogy; Application to IMRT optimization (the gradient method); The gradient method - discussion; The simulated annealing method; The optimization criteria - discussion; Hard and soft constraints; Dose volume constraints; Typical user interface for definition of optimization criteria; Biological constraints (Equivalent Uniform Dose); The result of the optimization process; Semi-automatic solutions for IMRT; Generalisation of the optimization problem; Driving and driven variables used in RT optimization; Towards multi-criteria optimization; and Conclusions for the optimization phase. (P.A.)

  19. Submucous Myoma Induces Uterine Inversion

    Directory of Open Access Journals (Sweden)

    Yu-Li Chen

    2006-06-01

    Conclusion: Nonpuerperal inversion of the uterus is rarely encountered by gynecologists. Diagnosis of uterine inversion is often not easy and imaging studies might be helpful. Surgical treatment is the method of choice in nonpuerperal uterine inversion.

  20. Polymorphic Embedding of DSLs

    DEFF Research Database (Denmark)

    Hofer, Christian; Ostermann, Klaus; Rendel, Tillmann

    2008-01-01

    propose polymorphic embedding of DSLs, where many different interpretations of a DSL can be provided as reusable components, and show how polymorphic embedding can be realized in the programming language Scala. With polymorphic embedding, the static type-safety, modularity, composability and rapid...... prototyping of pure embedding are reconciled with the flexibility attainable by external toolchains....

  1. Inverse scale space decomposition

    DEFF Research Database (Denmark)

    Schmidt, Marie Foged; Benning, Martin; Schönlieb, Carola-Bibiane

    2018-01-01

    We investigate the inverse scale space flow as a decomposition method for decomposing data into generalised singular vectors. We show that the inverse scale space flow, based on convex and even and positively one-homogeneous regularisation functionals, can decompose data represented...... by the application of a forward operator to a linear combination of generalised singular vectors into its individual singular vectors. We verify that for this decomposition to hold true, two additional conditions on the singular vectors are sufficient: orthogonality in the data space and inclusion of partial sums...... of the subgradients of the singular vectors in the subdifferential of the regularisation functional at zero. We also address the converse question of when the inverse scale space flow returns a generalised singular vector given that the initial data is arbitrary (and therefore not necessarily in the range...

  2. Inversion assuming weak scattering

    DEFF Research Database (Denmark)

    Xenaki, Angeliki; Gerstoft, Peter; Mosegaard, Klaus

    2013-01-01

    due to the complex nature of the field. A method based on linear inversion is employed to infer information about the statistical properties of the scattering field from the obtained cross-spectral matrix. A synthetic example based on an active high-frequency sonar demonstrates that the proposed...

  3. Locative Inversion in English

    NARCIS (Netherlands)

    Broekhuis, H.

    2005-01-01

    This article aims at reformulating in more current terms Hoekstra and Mulder’s (1990) analysis of the Locative Inversion (LI) construction. The new proposal is crucially based on the assumption that Small Clause (SC) predicates agree with their external argument in phi-features, which may be

  4. Bayesian seismic AVO inversion

    Energy Technology Data Exchange (ETDEWEB)

    Buland, Arild

    2002-07-01

    A new linearized AVO inversion technique is developed in a Bayesian framework. The objective is to obtain posterior distributions for P-wave velocity, S-wave velocity and density. Distributions for other elastic parameters can also be assessed, for example acoustic impedance, shear impedance and P-wave to S-wave velocity ratio. The inversion algorithm is based on the convolutional model and a linearized weak contrast approximation of the Zoeppritz equation. The solution is represented by a Gaussian posterior distribution with explicit expressions for the posterior expectation and covariance, hence exact prediction intervals for the inverted parameters can be computed under the specified model. The explicit analytical form of the posterior distribution provides a computationally fast inversion method. Tests on synthetic data show that all inverted parameters were almost perfectly retrieved when the noise approached zero. With realistic noise levels, acoustic impedance was the best determined parameter, while the inversion provided practically no information about the density. The inversion algorithm has also been tested on a real 3-D dataset from the Sleipner Field. The results show good agreement with well logs but the uncertainty is high. The stochastic model includes uncertainties of both the elastic parameters, the wavelet and the seismic and well log data. The posterior distribution is explored by Markov chain Monte Carlo simulation using the Gibbs sampler algorithm. The inversion algorithm has been tested on a seismic line from the Heidrun Field with two wells located on the line. The uncertainty of the estimated wavelet is low. In the Heidrun examples the effect of including uncertainty of the wavelet and the noise level was marginal with respect to the AVO inversion results. We have developed a 3-D linearized AVO inversion method with spatially coupled model parameters where the objective is to obtain posterior distributions for P-wave velocity, S

  5. Pseudo waveform inversion

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Chang Soo; Park, Keun Pil [Korea Inst. of Geology Mining and Materials, Taejon (Korea, Republic of); Suh, Jung Hee; Hyun, Byung Koo; Shin, Sung Ryul [Seoul National University, Seoul (Korea, Republic of)

    1995-12-01

    The seismic reflection exploration technique which is one of the geophysical methods for oil exploration became effectively to image the subsurface structure with rapid development of computer. However, the imagining of subsurface based on the conventional data processing is almost impossible to obtain the information on physical properties of the subsurface such as velocity and density. Since seismic data are implicitly function of velocities of subsurface, it is necessary to develop the inversion method that can delineate the velocity structure using seismic topography and waveform inversion. As a tool to perform seismic inversion, seismic forward modeling program using ray tracing should be developed. In this study, we have developed the algorithm that calculate the travel time of the complex geologic structure using shooting ray tracing by subdividing the geologic model into blocky structure having the constant velocity. With the travel time calculation, the partial derivatives of travel time can be calculated efficiently without difficulties. Since the current ray tracing technique has a limitation to calculate the travel times for extremely complex geologic model, our aim in the future is to develop the powerful ray tracer using the finite element technique. After applying the pseudo waveform inversion to the seismic data of Korea offshore, we can obtain the subsurface velocity model and use the result in bring up the quality of the seismic data processing. If conventional seismic data processing and seismic interpretation are linked with this inversion technique, the high quality of seismic data processing can be expected to image the structure of the subsurface. Future research area is to develop the powerful ray tracer of ray tracing which can calculate the travel times for the extremely complex geologic model. (author). 39 refs., 32 figs., 2 tabs.

  6. Calculation of the inverse data space via sparse inversion

    KAUST Repository

    Saragiotis, Christos

    2011-01-01

    The inverse data space provides a natural separation of primaries and surface-related multiples, as the surface multiples map onto the area around the origin while the primaries map elsewhere. However, the calculation of the inverse data is far from trivial as theory requires infinite time and offset recording. Furthermore regularization issues arise during inversion. We perform the inversion by minimizing the least-squares norm of the misfit function by constraining the $ell_1$ norm of the solution, being the inverse data space. In this way a sparse inversion approach is obtained. We show results on field data with an application to surface multiple removal.

  7. Polymorphous computing fabric

    Science.gov (United States)

    Wolinski, Christophe Czeslaw [Los Alamos, NM; Gokhale, Maya B [Los Alamos, NM; McCabe, Kevin Peter [Los Alamos, NM

    2011-01-18

    Fabric-based computing systems and methods are disclosed. A fabric-based computing system can include a polymorphous computing fabric that can be customized on a per application basis and a host processor in communication with said polymorphous computing fabric. The polymorphous computing fabric includes a cellular architecture that can be highly parameterized to enable a customized synthesis of fabric instances for a variety of enhanced application performances thereof. A global memory concept can also be included that provides the host processor random access to all variables and instructions associated with the polymorphous computing fabric.

  8. Electrochemically driven emulsion inversion

    International Nuclear Information System (INIS)

    Johans, Christoffer; Kontturi, Kyoesti

    2007-01-01

    It is shown that emulsions stabilized by ionic surfactants can be inverted by controlling the electrical potential across the oil-water interface. The potential dependent partitioning of sodium dodecyl sulfate (SDS) was studied by cyclic voltammetry at the 1,2-dichlorobenzene|water interface. In the emulsion the potential control was achieved by using a potential-determining salt. The inversion of a 1,2-dichlorobenzene-in-water (O/W) emulsion stabilized by SDS was followed by conductometry as a function of added tetrapropylammonium chloride. A sudden drop in conductivity was observed, indicating the change of the continuous phase from water to 1,2-dichlorobenzene, i.e. a water-in-1,2-dichlorobenzene emulsion was formed. The inversion potential is well in accordance with that predicted by the hydrophilic-lipophilic deviation if the interfacial potential is appropriately accounted for

  9. Channelling versus inversion

    DEFF Research Database (Denmark)

    Gale, A.S.; Surlyk, Finn; Anderskouv, Kresten

    2013-01-01

    Evidence from regional stratigraphical patterns in Santonian−Campanian chalk is used to infer the presence of a very broad channel system (5 km across) with a depth of at least 50 m, running NNW−SSE across the eastern Isle of Wight; only the western part of the channel wall and fill is exposed. W......−Campanian chalks in the eastern Isle of Wight, involving penecontemporaneous tectonic inversion of the underlying basement structure, are rejected....

  10. Intersections, ideals, and inversion

    International Nuclear Information System (INIS)

    Vasco, D.W.

    1998-01-01

    Techniques from computational algebra provide a framework for treating large classes of inverse problems. In particular, the discretization of many types of integral equations and of partial differential equations with undetermined coefficients lead to systems of polynomial equations. The structure of the solution set of such equations may be examined using algebraic techniques.. For example, the existence and dimensionality of the solution set may be determined. Furthermore, it is possible to bound the total number of solutions. The approach is illustrated by a numerical application to the inverse problem associated with the Helmholtz equation. The algebraic methods are used in the inversion of a set of transverse electric (TE) mode magnetotelluric data from Antarctica. The existence of solutions is demonstrated and the number of solutions is found to be finite, bounded from above at 50. The best fitting structure is dominantly one dimensional with a low crustal resistivity of about 2 ohm-m. Such a low value is compatible with studies suggesting lower surface wave velocities than found in typical stable cratons

  11. Intersections, ideals, and inversion

    Energy Technology Data Exchange (ETDEWEB)

    Vasco, D.W.

    1998-10-01

    Techniques from computational algebra provide a framework for treating large classes of inverse problems. In particular, the discretization of many types of integral equations and of partial differential equations with undetermined coefficients lead to systems of polynomial equations. The structure of the solution set of such equations may be examined using algebraic techniques.. For example, the existence and dimensionality of the solution set may be determined. Furthermore, it is possible to bound the total number of solutions. The approach is illustrated by a numerical application to the inverse problem associated with the Helmholtz equation. The algebraic methods are used in the inversion of a set of transverse electric (TE) mode magnetotelluric data from Antarctica. The existence of solutions is demonstrated and the number of solutions is found to be finite, bounded from above at 50. The best fitting structure is dominantly onedimensional with a low crustal resistivity of about 2 ohm-m. Such a low value is compatible with studies suggesting lower surface wave velocities than found in typical stable cratons.

  12. Inverse transition radiation

    International Nuclear Information System (INIS)

    Steinhauer, L.C.; Romea, R.D.; Kimura, W.D.

    1997-01-01

    A new method for laser acceleration is proposed based upon the inverse process of transition radiation. The laser beam intersects an electron-beam traveling between two thin foils. The principle of this acceleration method is explored in terms of its classical and quantum bases and its inverse process. A closely related concept based on the inverse of diffraction radiation is also presented: this concept has the significant advantage that apertures are used to allow free passage of the electron beam. These concepts can produce net acceleration because they do not satisfy the conditions in which the Lawson-Woodward theorem applies (no net acceleration in an unbounded vacuum). Finally, practical aspects such as damage limits at optics are employed to find an optimized set of parameters. For reasonable assumptions an acceleration gradient of 200 MeV/m requiring a laser power of less than 1 GW is projected. An interesting approach to multi-staging the acceleration sections is also presented. copyright 1997 American Institute of Physics

  13. Typing polymorphic recursion

    OpenAIRE

    Figueiredo, Lucília Camarão de; Camarão, Carlos

    2001-01-01

    This paper discusses some advantages of supporting polymorphic recursión in programming languages and describes a decidable type inference algorithm for typing polymorphic and possibly mutually recursive definitions, using Haskell to provide an executable high level specification of the algorithm.

  14. Genes located in a chromosomal inversion are correlated with territorial song in white-throated sparrows

    OpenAIRE

    Zinzow-Kramer, Wendy M.; Horton, Brent M.; McKee, Clifton D.; Michaud, Justin M.; Tharp, Gregory K.; Thomas, James W.; Tuttle, Elaina M.; Yi, Soojin; Maney, Donna L.

    2015-01-01

    The genome of the white-throated sparrow (Zonotrichia albicollis) contains an inversion polymorphism on chromosome 2 that is linked to predictable variation in a suite of phenotypic traits including plumage color, aggression, and parental behavior. Differences in gene expression between the two color morphs, which represent the two common inversion genotypes (ZAL2/ZAL2 and ZAL2/ZAL2m), are therefore of potential interest toward understanding the molecular underpinnings of these phenotypes. To...

  15. Limits to Nonlinear Inversion

    DEFF Research Database (Denmark)

    Mosegaard, Klaus

    2012-01-01

    For non-linear inverse problems, the mathematical structure of the mapping from model parameters to data is usually unknown or partly unknown. Absence of information about the mathematical structure of this function prevents us from presenting an analytical solution, so our solution depends on our...... ability to produce efficient search algorithms. Such algorithms may be completely problem-independent (which is the case for the so-called 'meta-heuristics' or 'blind-search' algorithms), or they may be designed with the structure of the concrete problem in mind. We show that pure meta...

  16. Inverse plasma equilibria

    International Nuclear Information System (INIS)

    Hicks, H.R.; Dory, R.A.; Holmes, J.A.

    1983-01-01

    We illustrate in some detail a 2D inverse-equilibrium solver that was constructed to analyze tokamak configurations and stellarators (the latter in the context of the average method). To ensure that the method is suitable not only to determine equilibria, but also to provide appropriately represented data for existing stability codes, it is important to be able to control the Jacobian, tilde J is identical to delta(R,Z)/delta(rho, theta). The form chosen is tilde J = J 0 (rho)R/sup l/rho where rho is a flux surface label, and l is an integer. The initial implementation is for a fixed conducting-wall boundary, but the technique can be extended to a free-boundary model

  17. The effect of genomic inversions on estimation of population genetic parameters from SNP data.

    Science.gov (United States)

    Seich Al Basatena, Nafisa-Katrin; Hoggart, Clive J; Coin, Lachlan J; O'Reilly, Paul F

    2013-01-01

    In recent years it has emerged that structural variants have a substantial impact on genomic variation. Inversion polymorphisms represent a significant class of structural variant, and despite the challenges in their detection, data on inversions in the human genome are increasing rapidly. Statistical methods for inferring parameters such as the recombination rate and the selection coefficient have generally been developed without accounting for the presence of inversions. Here we exploit new software for simulating inversions in population genetic data, invertFREGENE, to assess the potential impact of inversions on such methods. Using data simulated by invertFREGENE, as well as real data from several sources, we test whether large inversions have a disruptive effect on widely applied population genetics methods for inferring recombination rates, for detecting selection, and for controlling for population structure in genome-wide association studies (GWAS). We find that recombination rates estimated by LDhat are biased downward at inversion loci relative to the true contemporary recombination rates at the loci but that recombination hotspots are not falsely inferred at inversion breakpoints as may have been expected. We find that the integrated haplotype score (iHS) method for detecting selection appears robust to the presence of inversions. Finally, we observe a strong bias in the genome-wide results of principal components analysis (PCA), used to control for population structure in GWAS, in the presence of even a single large inversion, confirming the necessity to thin SNPs by linkage disequilibrium at large physical distances to obtain unbiased results.

  18. Holocaust inversion and contemporary antisemitism.

    OpenAIRE

    Klaff, Lesley D

    2014-01-01

    One of the cruellest aspects of the new antisemitism is its perverse use of the Holocaust as a stick to beat 'the Jews'. This article explains the phenomenon of 'Holocaust Inversion', which involves an 'inversion of reality' (the Israelis are cast as the 'new' Nazis and the Palestinians as the 'new' Jews) and an 'inversion of morality' (the Holocaust is presented as a moral lesson for, or even a moral indictment of, 'the Jews'). Holocaust inversion is a form of soft-core Holocaust denial, yet...

  19. invertFREGENE: software for simulating inversions in population genetic data.

    Science.gov (United States)

    O'Reilly, Paul F; Coin, Lachlan J M; Hoggart, Clive J

    2010-03-15

    Inversions are a common form of structural variation, which may have a marked effect on the genome and methods to infer quantities of interest such as those relating to population structure and natural selection. However, due to the challenge in detecting inversions, little is presently known about their impact. Software to simulate inversions could be used to provide a better understanding of how to detect and account for them; but while there are several software packages for simulating population genetic data, none incorporate inversion polymorphisms. Here, we describe a software package, modified from the forward-in-time simulator FREGENE, which simulates the evolution of an inversion polymorphism, of specified length, location, frequency and age, in a population of sequences. We describe previously unreported signatures of inversions in SNP data observed in invertFREGENE results and a known inversion in humans. C++ source code and user manual are available for download from http://www.ebi.ac.uk/projects/BARGEN/ under the GPL licence. l.coin@ic.ac.uk; c.hoggart@ic.ac.uk Supplementary data are available at Bioinformatics online.

  20. Inverse feasibility problems of the inverse maximum flow problems

    Indian Academy of Sciences (India)

    A linear time method to decide if any inverse maximum flow (denoted General Inverse Maximum Flow problems (IMFG)) problem has solution is deduced. If IMFG does not have solution, methods to transform IMFG into a feasible problem are presented. The methods consist of modifying as little as possible the restrictions to ...

  1. Inverse feasibility problems of the inverse maximum flow problems

    Indian Academy of Sciences (India)

    199–209. c Indian Academy of Sciences. Inverse feasibility problems of the inverse maximum flow problems. ADRIAN DEACONU. ∗ and ELEONOR CIUREA. Department of Mathematics and Computer Science, Faculty of Mathematics and Informatics, Transilvania University of Brasov, Brasov, Iuliu Maniu st. 50,. Romania.

  2. Inverse problem in hydrogeology

    Science.gov (United States)

    Carrera, Jesús; Alcolea, Andrés; Medina, Agustín; Hidalgo, Juan; Slooten, Luit J.

    2005-03-01

    The state of the groundwater inverse problem is synthesized. Emphasis is placed on aquifer characterization, where modelers have to deal with conceptual model uncertainty (notably spatial and temporal variability), scale dependence, many types of unknown parameters (transmissivity, recharge, boundary conditions, etc.), nonlinearity, and often low sensitivity of state variables (typically heads and concentrations) to aquifer properties. Because of these difficulties, calibration cannot be separated from the modeling process, as it is sometimes done in other fields. Instead, it should be viewed as one step in the process of understanding aquifer behavior. In fact, it is shown that actual parameter estimation methods do not differ from each other in the essence, though they may differ in the computational details. It is argued that there is ample room for improvement in groundwater inversion: development of user-friendly codes, accommodation of variability through geostatistics, incorporation of geological information and different types of data (temperature, occurrence and concentration of isotopes, age, etc.), proper accounting of uncertainty, etc. Despite this, even with existing codes, automatic calibration facilitates enormously the task of modeling. Therefore, it is contended that its use should become standard practice. L'état du problème inverse des eaux souterraines est synthétisé. L'accent est placé sur la caractérisation de l'aquifère, où les modélisateurs doivent jouer avec l'incertitude des modèles conceptuels (notamment la variabilité spatiale et temporelle), les facteurs d'échelle, plusieurs inconnues sur différents paramètres (transmissivité, recharge, conditions aux limites, etc.), la non linéarité, et souvent la sensibilité de plusieurs variables d'état (charges hydrauliques, concentrations) des propriétés de l'aquifère. A cause de ces difficultés, le calibrage ne peut êtreséparé du processus de modélisation, comme c'est le

  3. Face inversion increases attractiveness.

    Science.gov (United States)

    Leder, Helmut; Goller, Juergen; Forster, Michael; Schlageter, Lena; Paul, Matthew A

    2017-07-01

    Assessing facial attractiveness is a ubiquitous, inherent, and hard-wired phenomenon in everyday interactions. As such, it has highly adapted to the default way that faces are typically processed: viewing faces in upright orientation. By inverting faces, we can disrupt this default mode, and study how facial attractiveness is assessed. Faces, rotated at 90 (tilting to either side) and 180°, were rated on attractiveness and distinctiveness scales. For both orientations, we found that faces were rated more attractive and less distinctive than upright faces. Importantly, these effects were more pronounced for faces rated low in upright orientation, and smaller for highly attractive faces. In other words, the less attractive a face was, the more it gained in attractiveness by inversion or rotation. Based on these findings, we argue that facial attractiveness assessments might not rely on the presence of attractive facial characteristics, but on the absence of distinctive, unattractive characteristics. These unattractive characteristics are potentially weighed against an individual, attractive prototype in assessing facial attractiveness. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

  4. Multiples waveform inversion

    KAUST Repository

    Zhang, Dongliang

    2013-01-01

    To increase the illumination of the subsurface and to eliminate the dependency of FWI on the source wavelet, we propose multiples waveform inversion (MWI) that transforms each hydrophone into a virtual point source with a time history equal to that of the recorded data. These virtual sources are used to numerically generate downgoing wavefields that are correlated with the backprojected surface-related multiples to give the migration image. Since the recorded data are treated as the virtual sources, knowledge of the source wavelet is not required, and the subsurface illumination is greatly enhanced because the entire free surface acts as an extended source compared to the radiation pattern of a traditional point source. Numerical tests on the Marmousi2 model show that the convergence rate and the spatial resolution of MWI is, respectively, faster and more accurate then FWI. The potential pitfall with this method is that the multiples undergo more than one roundtrip to the surface, which increases attenuation and reduces spatial resolution. This can lead to less resolved tomograms compared to conventional FWI. The possible solution is to combine both FWI and MWI in inverting for the subsurface velocity distribution.

  5. Coin tossing and Laplace inversion

    Indian Academy of Sciences (India)

    MS received 5 May 1999; revised 3 April 2000. Abstract. An analysis of exchangeable sequences of coin tossings leads to inversion formulae for Laplace transforms of probability measures. Keywords. Laplace inversion; moment problem; exchangeable probabilities. 1. Introduction. There is an intimate relationship between ...

  6. Inverse problems for Maxwell's equations

    CERN Document Server

    Romanov, V G

    1994-01-01

    The Inverse and Ill-Posed Problems Series is a series of monographs publishing postgraduate level information on inverse and ill-posed problems for an international readership of professional scientists and researchers. The series aims to publish works which involve both theory and applications in, e.g., physics, medicine, geophysics, acoustics, electrodynamics, tomography, and ecology.

  7. Algebraic properties of generalized inverses

    CERN Document Server

    Cvetković‐Ilić, Dragana S

    2017-01-01

    This book addresses selected topics in the theory of generalized inverses. Following a discussion of the “reverse order law” problem and certain problems involving completions of operator matrices, it subsequently presents a specific approach to solving the problem of the reverse order law for {1} -generalized inverses. Particular emphasis is placed on the existence of Drazin invertible completions of an upper triangular operator matrix; on the invertibility and different types of generalized invertibility of a linear combination of operators on Hilbert spaces and Banach algebra elements; on the problem of finding representations of the Drazin inverse of a 2x2 block matrix; and on selected additive results and algebraic properties for the Drazin inverse. In addition to the clarity of its content, the book discusses the relevant open problems for each topic discussed. Comments on the latest references on generalized inverses are also included. Accordingly, the book will be useful for graduate students, Ph...

  8. A rainbow inverse problem

    Directory of Open Access Journals (Sweden)

    Calvez V.

    2010-12-01

    Full Text Available We consider the radiative transfer equation (RTE with reflection in a three-dimensional domain, infinite in two dimensions, and prove an existence result. Then, we study the inverse problem of retrieving the optical parameters from boundary measurements, with help of existing results by Choulli and Stefanov. This theoretical analysis is the framework of an attempt to model the color of the skin. For this purpose, a code has been developed to solve the RTE and to study the sensitivity of the measurements made by biophysicists with respect to the physiological parameters responsible for the optical properties of this complex, multi-layered material. On étudie l’équation du transfert radiatif (ETR dans un domaine tridimensionnel infini dans deux directions, et on prouve un résultat d’existence. On s’intéresse ensuite à la reconstruction des paramètres optiques à partir de mesures faites au bord, en s’appuyant sur des résultats de Choulli et Stefanov. Cette analyse sert de cadre théorique à un travail de modélisation de la couleur de la peau. Dans cette perspective, un code à été développé pour résoudre l’ETR et étudier la sensibilité des mesures effectuées par les biophysiciens par rapport aux paramètres physiologiques tenus pour responsables des propriétés optiques de ce complexe matériau multicouche.

  9. Bayesian Approach to Inverse Problems

    CERN Document Server

    2008-01-01

    Many scientific, medical or engineering problems raise the issue of recovering some physical quantities from indirect measurements; for instance, detecting or quantifying flaws or cracks within a material from acoustic or electromagnetic measurements at its surface is an essential problem of non-destructive evaluation. The concept of inverse problems precisely originates from the idea of inverting the laws of physics to recover a quantity of interest from measurable data.Unfortunately, most inverse problems are ill-posed, which means that precise and stable solutions are not easy to devise. Regularization is the key concept to solve inverse problems.The goal of this book is to deal with inverse problems and regularized solutions using the Bayesian statistical tools, with a particular view to signal and image estimation

  10. Testing earthquake source inversion methodologies

    KAUST Repository

    Page, Morgan T.

    2011-01-01

    Source Inversion Validation Workshop; Palm Springs, California, 11-12 September 2010; Nowadays earthquake source inversions are routinely performed after large earthquakes and represent a key connection between recorded seismic and geodetic data and the complex rupture process at depth. The resulting earthquake source models quantify the spatiotemporal evolution of ruptures. They are also used to provide a rapid assessment of the severity of an earthquake and to estimate losses. However, because of uncertainties in the data, assumed fault geometry and velocity structure, and chosen rupture parameterization, it is not clear which features of these source models are robust. Improved understanding of the uncertainty and reliability of earthquake source inversions will allow the scientific community to use the robust features of kinematic inversions to more thoroughly investigate the complexity of the rupture process and to better constrain other earthquakerelated computations, such as ground motion simulations and static stress change calculations.

  11. Parameter estimation and inverse problems

    CERN Document Server

    Aster, Richard C; Thurber, Clifford H

    2005-01-01

    Parameter Estimation and Inverse Problems primarily serves as a textbook for advanced undergraduate and introductory graduate courses. Class notes have been developed and reside on the World Wide Web for faciliting use and feedback by teaching colleagues. The authors'' treatment promotes an understanding of fundamental and practical issus associated with parameter fitting and inverse problems including basic theory of inverse problems, statistical issues, computational issues, and an understanding of how to analyze the success and limitations of solutions to these probles. The text is also a practical resource for general students and professional researchers, where techniques and concepts can be readily picked up on a chapter-by-chapter basis.Parameter Estimation and Inverse Problems is structured around a course at New Mexico Tech and is designed to be accessible to typical graduate students in the physical sciences who may not have an extensive mathematical background. It is accompanied by a Web site that...

  12. Statistical perspectives on inverse problems

    DEFF Research Database (Denmark)

    Andersen, Kim Emil

    of the interior of an object from electrical boundary measurements. One part of this thesis concerns statistical approaches for solving, possibly non-linear, inverse problems. Thus inverse problems are recasted in a form suitable for statistical inference. In particular, a Bayesian approach for regularisation...... problem is given in terms of probability distributions. Posterior inference is obtained by Markov chain Monte Carlo methods and new, powerful simulation techniques based on e.g. coupled Markov chains and simulated tempering is developed to improve the computational efficiency of the overall simulation......Inverse problems arise in many scientific disciplines and pertain to situations where inference is to be made about a particular phenomenon from indirect measurements. A typical example, arising in diffusion tomography, is the inverse boundary value problem for non-invasive reconstruction...

  13. Teaching polymorphism early

    DEFF Research Database (Denmark)

    2005-01-01

    Is it possible to teach dynamic polymorphism early? What techniques could facilitate teaching it in Java. This panel will bring together people who have considered this question and attempted to implement it in various ways, some more completely than others. It will also give participants...

  14. Single Nucleotide Polymorphism

    DEFF Research Database (Denmark)

    Børsting, Claus; Pereira, Vania; Andersen, Jeppe Dyrberg

    2014-01-01

    Single nucleotide polymorphisms (SNPs) are the most frequent DNA sequence variations in the genome. They have been studied extensively in the last decade with various purposes in mind. In this chapter, we will discuss the advantages and disadvantages of using SNPs for human identification...

  15. Polymorphs of Pridopidine Hydrochloride

    DEFF Research Database (Denmark)

    Zimmermann, A.; Frostrup, B.; Bond, A. D.

    2012-01-01

    Pridopidine hydrochloride (Huntexil, Neuro-Search A/S, Ballerup, Denmark) is a dopaminergic stabilizer, currently in development for the treatment of motor symptoms associated with Huntington's disease. In this study, two polymorphic forms are characterized, forms I and II. The crystal structures...

  16. Computation of inverse magnetic cascades

    International Nuclear Information System (INIS)

    Montgomery, D.

    1981-10-01

    Inverse cascades of magnetic quantities for turbulent incompressible magnetohydrodynamics are reviewed, for two and three dimensions. The theory is extended to the Strauss equations, a description intermediate between two and three dimensions appropriate to tokamak magnetofluids. Consideration of the absolute equilibrium Gibbs ensemble for the system leads to a prediction of an inverse cascade of magnetic helicity, which may manifest itself as a major disruption. An agenda for computational investigation of this conjecture is proposed

  17. Thermal measurements and inverse techniques

    CERN Document Server

    Orlande, Helcio RB; Maillet, Denis; Cotta, Renato M

    2011-01-01

    With its uncommon presentation of instructional material regarding mathematical modeling, measurements, and solution of inverse problems, Thermal Measurements and Inverse Techniques is a one-stop reference for those dealing with various aspects of heat transfer. Progress in mathematical modeling of complex industrial and environmental systems has enabled numerical simulations of most physical phenomena. In addition, recent advances in thermal instrumentation and heat transfer modeling have improved experimental procedures and indirect measurements for heat transfer research of both natural phe

  18. Coin tossing and Laplace inversion

    Indian Academy of Sciences (India)

    of a probability measure " on Е0Y 1К via the obvious change of variables e└t И xX An inversion formula for " in terms of its moments yields an inversion formula for # in terms of the values of its Laplace transform at n И 0Y 1Y 2Y ... and vice versa. In our discussion we allow " (respectively #) to have positive mass at 0 ...

  19. EDITORIAL: Inverse Problems in Engineering

    Science.gov (United States)

    West, Robert M.; Lesnic, Daniel

    2007-01-01

    Presented here are 11 noteworthy papers selected from the Fifth International Conference on Inverse Problems in Engineering: Theory and Practice held in Cambridge, UK during 11-15 July 2005. The papers have been peer-reviewed to the usual high standards of this journal and the contributions of reviewers are much appreciated. The conference featured a good balance of the fundamental mathematical concepts of inverse problems with a diverse range of important and interesting applications, which are represented here by the selected papers. Aspects of finite-element modelling and the performance of inverse algorithms are investigated by Autrique et al and Leduc et al. Statistical aspects are considered by Emery et al and Watzenig et al with regard to Bayesian parameter estimation and inversion using particle filters. Electrostatic applications are demonstrated by van Berkel and Lionheart and also Nakatani et al. Contributions to the applications of electrical techniques and specifically electrical tomographies are provided by Wakatsuki and Kagawa, Kim et al and Kortschak et al. Aspects of inversion in optical tomography are investigated by Wright et al and Douiri et al. The authors are representative of the worldwide interest in inverse problems relating to engineering applications and their efforts in producing these excellent papers will be appreciated by many readers of this journal.

  20. Genetic exchange versus genetic differentiation in a medium-sized inversion of Drosophila: the A2/Ast arrangements of Drosophila subobscura.

    Science.gov (United States)

    Nóbrega, Clévio; Khadem, Mahnaz; Aguadé, Montserrat; Segarra, Carmen

    2008-08-01

    Chromosomal inversion polymorphism affects nucleotide variation at loci associated with inversions. In Drosophila subobscura, a species with a rich chromosomal inversion polymorphism and the largest recombinational map so far reported in the Drosophila genus, extensive genetic structure of nucleotide variation was detected in the segment affected by the O(3) inversion, a moderately sized inversion at Muller's element E. Indeed, a strong genetic differentiation all over O(3) and no evidence of a higher genetic exchange in the center of the inversion than at breakpoints were detected. In order to ascertain, whether other polymorphic and differently sized inversions of D. subobscura also exhibited a strong genetic structure, nucleotide variation in 5 gene regions (P236, P275, P150, Sxl, and P125) located along the A(2) inversion was analyzed in A(st) and A(2) chromosomes of D. subobscura. A(2) is a medium-sized inversion at Muller's element A and forms a single inversion loop in heterokaryotypes. The lower level of variation in A(2) relative to A(st) and the significant excess of low-frequency variants at polymorphic sites indicate that nucleotide variation at A(2) is not at mutation-drift equilibrium. The closest region to an inversion breakpoint, P236, exhibits the highest level of genetic differentiation (F(ST)) and of linkage disequilibrium (LD) between arrangements and variants at nucleotide polymorphic sites. The remaining 4 regions show a higher level of genetic exchange between A(2) and A(st) chromosomes than P236, as revealed by F(ST) and LD estimates. However, significant genetic differentiation between the A(st) and A(2) arrangements was detected not only at P236 but also in the other 4 regions separated from the nearest breakpoint by 1.2-2.9 Mb. Therefore, the extent of genetic exchange between arrangements has not been high enough to homogenize nucleotide variation in the center of the A(2) inversion. A(2) can be considered a typical successful inversion

  1. Micro-Evolution in Grasshoppers Mediated by Polymorphic Robertsonian Translocations

    Science.gov (United States)

    Colombo, Pablo C.

    2013-01-01

    This review focuses on grasshoppers that are polymorphic for Robertsonian translocations because in these organisms the clarity of meiotic figures allows the study of both chiasma distribution and the orientation of trivalents and multivalents in metaphase I. Only five species of such grasshoppers were found in the literature, and all of them were from the New World: Oedaleonotus enigma (Scudder) (Orthoptera: Acrididae), Leptysma argentina Bruner, Dichroplus pratensis Bruner, Sinipta dalmani Stål, and Cornops aquaticum Bruner. A general feature of these species (except O. enigma) is that fusion carriers suffer a marked reduction of proximal and interstitial (with respect to the centromere) chiasma frequency; this fact, along with the reduction in the number of linkage groups with the consequent loss of independent segregation, produces a marked decrease of recombination in fusion carriers. This reduction in recombination has led to the conclusion that Robertsonian polymorphic grasshopper species share some properties with inversion polymorphic species of Drosophila, such as the central-marginal pattern (marginal populations are monomorphic, central populations are highly polymorphic). This pattern might be present in D. pratensis, which is certainly the most complex Robertsonian polymorphism system in the present study. However, L. argentina and C. aquaticum do not display this pattern. This issue is open to further research. Since C. aquaticum is soon to be released in South Africa as a biological control, the latitudinal pattern found in South America may repeat there. This experiment's outcome is open and deserves to be followed. PMID:23909914

  2. Chromatid Painting for Chromosomal Inversion Detection Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose a novel approach to the detection of chromosomal inversions. Transmissible chromosome aberrations (translocations and inversions) have profound genetic...

  3. Polymorphism of phosphoric oxide

    Science.gov (United States)

    Hill, W.L.; Faust, G.T.; Hendricks, S.B.

    1943-01-01

    The melting points and monotropic relationship of three crystalline forms of phosphoric oxide were determined by the method of quenching. Previous vapor pressure data are discussed and interpreted to establish a pressure-temperature diagram (70 to 600??) for the one-component system. The system involves three triple points, at which solid, liquid and vapor (P4O10) coexist in equilibrium, namely: 420?? and 360 cm., 562?? and 43.7 cm. and 580?? and 55.5 cm., corresponding to the hexagonal, orthorhombic and stable polymorphs, respectively, and at least two distinct liquids, one a stable polymer of the other, which are identified with the melting of the stable form and the hexagonal modification, respectively. Indices of refraction of the polymorphs and glasses were determined. The density and the thermal, hygroscopic and structural properties of the several phases are discussed.

  4. Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus

    Science.gov (United States)

    Ayala, Diego; Fontaine, Michael C.; Cohuet, Anna; Fontenille, Didier; Vitalis, Renaud; Simard, Frédéric

    2011-01-01

    Chromosomal polymorphisms, such as inversions, are presumably involved in the rapid adaptation of populations to local environmental conditions. Reduced recombination between alternative arrangements in heterozygotes may protect sets of locally adapted genes, promoting ecological divergence and potentially leading to reproductive isolation and speciation. Through a comparative analysis of chromosomal inversions and microsatellite marker polymorphisms, we hereby present biological evidence that strengthens this view in the mosquito Anopheles funestus s.s, one of the most important and widespread malaria vectors in Africa. Specimens were collected across a wide range of geographical, ecological, and climatic conditions in Cameroon. We observed a sharp contrast between population structure measured at neutral microsatellite markers and at chromosomal inversions. Microsatellite data detected only a weak signal for population structuring among geographical zones (FST 0.190, P < 0.01). Using standardized estimates of FST, we show that inversions behave at odds with neutral expectations strongly suggesting a role of environmental selection in shaping their distribution. We further demonstrate through canonical correspondence analysis that heterogeneity in eco-geographical variables measured at specimen sampling sites explained 89% of chromosomal variance in A. funestus. These results are in agreement with a role of chromosomal inversions in ecotypic adaptation in this species. We argue that this widespread mosquito represents an interesting model system for the study of chromosomal speciation mechanisms and should provide ample opportunity for comparative studies on the evolution of reproductive isolation and speciation in major human malaria vectors. PMID:20837604

  5. Inverse comptonization vs. thermal synchrotron

    International Nuclear Information System (INIS)

    Fenimore, E.E.; Klebesadel, R.W.; Laros, J.G.

    1983-01-01

    There are currently two radiation mechanisms being considered for gamma-ray bursts: thermal synchrotron and inverse comptonization. They are mutually exclusive since thermal synchrotron requires a magnetic field of approx. 10 12 Gauss whereas inverse comptonization cannot produce a monotonic spectrum if the field is larger than 10 11 and is too inefficient relative to thermal synchrotron unless the field is less than 10 9 Gauss. Neither mechanism can explain completely the observed characteristics of gamma-ray bursts. However, we conclude that thermal synchrotron is more consistent with the observations if the sources are approx. 40 kpc away whereas inverse comptonization is more consistent if they are approx. 300 pc away. Unfortunately, the source distance is still not known and, thus, the radiation mechanism is still uncertain

  6. Inverse comorbidity in multiple sclerosis

    DEFF Research Database (Denmark)

    Thormann, Anja; Koch-Henriksen, Nils; Laursen, Bjarne

    2016-01-01

    discovery rate and investigated each of eight pre-specified comorbidity categories: psychiatric, cerebrovascular, cardiovascular, lung, and autoimmune comorbidities, diabetes, cancer, and Parkinson's disease. Results A total of 8947 MS-cases and 44,735 controls were eligible for inclusion. We found...... This study showed a decreased risk of cancers and pulmonary diseases after onset of MS. Identification of inverse comorbidity and of its underlying mechanisms may provide important new entry points into the understanding of MS.......Background Inverse comorbidity is disease occurring at lower rates than expected among persons with a given index disease. The objective was to identify inverse comorbidity in MS. Methods We performed a combined case-control and cohort study in a total nationwide cohort of cases with clinical onset...

  7. Inverse photoemission of uranium oxides

    International Nuclear Information System (INIS)

    Roussel, P.; Morrall, P.; Tull, S.J.

    2009-01-01

    Understanding the itinerant-localised bonding role of the 5f electrons in the light actinides will afford an insight into their unusual physical and chemical properties. In recent years, the combination of core and valance band electron spectroscopies with theoretic modelling have already made significant progress in this area. However, information of the unoccupied density of states is still scarce. When compared to the forward photoemission techniques, measurements of the unoccupied states suffer from significantly less sensitivity and lower resolution. In this paper, we report on our experimental apparatus, which is designed to measure the inverse photoemission spectra of the light actinides. Inverse photoemission spectra of UO 2 and UO 2.2 along with the corresponding core and valance electron spectra are presented in this paper. UO 2 has been reported previously, although through its inclusion here it allows us to compare and contrast results from our experimental apparatus to the previous Bremsstrahlung Isochromat Spectroscopy and Inverse Photoemission Spectroscopy investigations

  8. Inverse source problems in elastodynamics

    Science.gov (United States)

    Bao, Gang; Hu, Guanghui; Kian, Yavar; Yin, Tao

    2018-04-01

    We are concerned with time-dependent inverse source problems in elastodynamics. The source term is supposed to be the product of a spatial function and a temporal function with compact support. We present frequency-domain and time-domain approaches to show uniqueness in determining the spatial function from wave fields on a large sphere over a finite time interval. The stability estimate of the temporal function from the data of one receiver and the uniqueness result using partial boundary data are proved. Our arguments rely heavily on the use of the Fourier transform, which motivates inversion schemes that can be easily implemented. A Landweber iterative algorithm for recovering the spatial function and a non-iterative inversion scheme based on the uniqueness proof for recovering the temporal function are proposed. Numerical examples are demonstrated in both two and three dimensions.

  9. Optimization for nonlinear inverse problem

    International Nuclear Information System (INIS)

    Boyadzhiev, G.; Brandmayr, E.; Pinat, T.; Panza, G.F.

    2007-06-01

    The nonlinear inversion of geophysical data in general does not yield a unique solution, but a single model, representing the investigated field, is preferred for an easy geological interpretation of the observations. The analyzed region is constituted by a number of sub-regions where the multi-valued nonlinear inversion is applied, which leads to a multi-valued solution. Therefore, combining the values of the solution in each sub-region, many acceptable models are obtained for the entire region and this complicates the geological interpretation of geophysical investigations. In this paper are presented new methodologies, capable to select one model, among all acceptable ones, that satisfies different criteria of smoothness in the explored space of solutions. In this work we focus on the non-linear inversion of surface waves dispersion curves, which gives structural models of shear-wave velocity versus depth, but the basic concepts have a general validity. (author)

  10. On the polymorphism of griseofulvin: identification of two additional polymorphs.

    Science.gov (United States)

    Mahieu, Aurelien; Willart, Jean-Francois; Dudognon, Emeline; Eddleston, Mark D; Jones, William; Danède, Florence; Descamps, Marc

    2013-02-01

    In this paper, we present an investigation of the polymorphism of griseofulvin. In addition to the only reported crystalline form (form I), two new polymorphic forms (II and III) have been identified and characterized by differential scanning calorimetry and powder X-ray diffraction. Reasons why these two polymorphs were isolated during the present study, but not detected during the numerous previous studies on this drug, are also discussed. Copyright © 2012 Wiley Periodicals, Inc.

  11. Inverse methods in hydrologic optics

    Directory of Open Access Journals (Sweden)

    Howard R. Gordon

    2002-03-01

    Full Text Available Methods for solving the hydrologic-optics inverse problem, i.e., estimating the inherent optical properties of a water body based solely on measurements of the apparent optical properties, are reviewed in detail. A new method is developed for the inverse problem in water bodies in which fluorescence is important. It is shown that in principle, given profiles of the spectra of up- and downwelling irradiance, estimation of the coefficient of inelastic scattering from any wave band to any other wave band can be effected.

  12. Inverse Interval Matrix: A Survey

    Czech Academy of Sciences Publication Activity Database

    Rohn, Jiří; Farhadsefat, R.

    2011-01-01

    Roč. 22, - (2011), s. 704-719 E-ISSN 1081-3810 R&D Projects: GA ČR GA201/09/1957; GA ČR GC201/08/J020 Institutional research plan: CEZ:AV0Z10300504 Keywords : interval matrix * inverse interval matrix * NP-hardness * enclosure * unit midpoint * inverse sign stability * nonnegative invertibility * absolute value equation * algorithm Subject RIV: BA - General Mathematics Impact factor: 0.808, year: 2010 http://www.math.technion.ac.il/iic/ela/ela-articles/articles/vol22_pp704-719.pdf

  13. Size Estimates in Inverse Problems

    KAUST Repository

    Di Cristo, Michele

    2014-01-06

    Detection of inclusions or obstacles inside a body by boundary measurements is an inverse problems very useful in practical applications. When only finite numbers of measurements are available, we try to detect some information on the embedded object such as its size. In this talk we review some recent results on several inverse problems. The idea is to provide constructive upper and lower estimates of the area/volume of the unknown defect in terms of a quantity related to the work that can be expressed with the available boundary data.

  14. -Dimensional Fractional Lagrange's Inversion Theorem

    Directory of Open Access Journals (Sweden)

    F. A. Abd El-Salam

    2013-01-01

    Full Text Available Using Riemann-Liouville fractional differential operator, a fractional extension of the Lagrange inversion theorem and related formulas are developed. The required basic definitions, lemmas, and theorems in the fractional calculus are presented. A fractional form of Lagrange's expansion for one implicitly defined independent variable is obtained. Then, a fractional version of Lagrange's expansion in more than one unknown function is generalized. For extending the treatment in higher dimensions, some relevant vectors and tensors definitions and notations are presented. A fractional Taylor expansion of a function of -dimensional polyadics is derived. A fractional -dimensional Lagrange inversion theorem is proved.

  15. Crystallization and Polymorphism of Felodipine

    DEFF Research Database (Denmark)

    Surov, A. O.; Solanko, K. A.; Bond, A. D.

    2012-01-01

    Two previously known polymorphs (forms I and II) and two new polymorphs (forms III and IV) of the calcium-channel blocker felodipine were obtained during attempts to cocrystallize the compound with a variety of potential cocrystal formers. A correlation was observed between the polymorphic outcome...... and the effective pH value in the presence of the cocrystal former, and it was possible subsequently to produce the four polymorphs by pH adjustment using H2SO4(aq) or NaOH(aq). This suggests that there is no distinct "structure-directing" role for the molecular additives present during the cocrystallization trials...

  16. Superconductivity in Pb inverse opal

    International Nuclear Information System (INIS)

    Aliev, Ali E.; Lee, Sergey B.; Zakhidov, Anvar A.; Baughman, Ray H.

    2007-01-01

    Type-II superconducting behavior was observed in highly periodic three-dimensional lead inverse opal prepared by infiltration of melted Pb in blue (D = 160 nm), green (D = 220 nm) and red (D = 300 nm) opals and followed by the extraction of the SiO 2 spheres by chemical etching. The onset of a broad phase transition (ΔT = 0.3 K) was shifted from T c = 7.196 K for bulk Pb to T c = 7.325 K. The upper critical field H c2 (3150 Oe) measured from high-field hysteresis loops exceeds the critical field for bulk lead (803 Oe) fourfold. Two well resolved peaks observed in the hysteresis loops were ascribed to flux penetration into the cylindrical void space that can be found in inverse opal structure and into the periodic structure of Pb nanoparticles. The red inverse opal shows pronounced oscillations of magnetic moment in the mixed state at low temperatures, T 0.9T c has been observed for all of the samples studied. The magnetic field periodicity of resistivity modulation is in good agreement with the lattice parameter of the inverse opal structure. We attribute the failure to observe pronounced modulation in magneto-resistive measurement to difficulties in the precision orientation of the sample along the magnetic field

  17. Statistical and Computational Inverse Problems

    CERN Document Server

    Kaipio, Jari

    2005-01-01

    Develops the statistical approach to inverse problems with an emphasis on modeling and computations. The book discusses the measurement noise modeling and Bayesian estimation, and uses Markov Chain Monte Carlo methods to explore the probability distributions. It is for researchers and advanced students in applied mathematics.

  18. Coin Tossing and Laplace Inversion

    Indian Academy of Sciences (India)

    An analysis of exchangeable sequences of coin tossings leads to inversion formulae for Laplace transforms of probability measures. Author Affiliations. J C Gupta1 2. Indian Statistical Institute, New Delhi 110 016, India; 32, Mirdha Tola, Budaun 243 601, India. Dates. Manuscript received: 5 May 1999; Manuscript revised: 3 ...

  19. Givental Graphs and Inversion Symmetry

    NARCIS (Netherlands)

    Dunin-Barkovskiy, P.; Shadrin, S.; Spitz, L.

    2013-01-01

    Inversion symmetry is a very non-trivial discrete symmetry of Frobenius manifolds. It was obtained by Dubrovin from one of the elementary Schlesinger transformations of a special ODE associated to a Frobenius manifold. In this paper, we review the Givental group action on Frobenius manifolds in

  20. Wave-equation dispersion inversion

    KAUST Repository

    Li, Jing

    2016-12-08

    We present the theory for wave-equation inversion of dispersion curves, where the misfit function is the sum of the squared differences between the wavenumbers along the predicted and observed dispersion curves. The dispersion curves are obtained from Rayleigh waves recorded by vertical-component geophones. Similar to wave-equation traveltime tomography, the complicated surface wave arrivals in traces are skeletonized as simpler data, namely the picked dispersion curves in the phase-velocity and frequency domains. Solutions to the elastic wave equation and an iterative optimization method are then used to invert these curves for 2-D or 3-D S-wave velocity models. This procedure, denoted as wave-equation dispersion inversion (WD), does not require the assumption of a layered model and is significantly less prone to the cycle-skipping problems of full waveform inversion. The synthetic and field data examples demonstrate that WD can approximately reconstruct the S-wave velocity distributions in laterally heterogeneous media if the dispersion curves can be identified and picked. The WD method is easily extended to anisotropic data and the inversion of dispersion curves associated with Love waves.

  1. Adjoint modeling for acoustic inversion

    Science.gov (United States)

    Hursky, Paul; Porter, Michael B.; Cornuelle, B. D.; Hodgkiss, W. S.; Kuperman, W. A.

    2004-02-01

    The use of adjoint modeling for acoustic inversion is investigated. An adjoint model is derived from a linearized forward propagation model to propagate data-model misfit at the observation points back through the medium to the medium perturbations not being accounted for in the model. This adjoint model can be used to aid in inverting for these unaccounted medium perturbations. Adjoint methods are being applied to a variety of inversion problems, but have not drawn much attention from the underwater acoustic community. This paper presents an application of adjoint methods to acoustic inversion. Inversions are demonstrated in simulation for both range-independent and range-dependent sound speed profiles using the adjoint of a parabolic equation model. Sensitivity and error analyses are discussed showing how the adjoint model enables calculations to be performed in the space of observations, rather than the often much larger space of model parameters. Using an adjoint model enables directions of steepest descent in the model parameters (what we invert for) to be calculated using far fewer modeling runs than if a forward model only were used.

  2. Workflows for Full Waveform Inversions

    Science.gov (United States)

    Boehm, Christian; Krischer, Lion; Afanasiev, Michael; van Driel, Martin; May, Dave A.; Rietmann, Max; Fichtner, Andreas

    2017-04-01

    Despite many theoretical advances and the increasing availability of high-performance computing clusters, full seismic waveform inversions still face considerable challenges regarding data and workflow management. While the community has access to solvers which can harness modern heterogeneous computing architectures, the computational bottleneck has fallen to these often manpower-bounded issues that need to be overcome to facilitate further progress. Modern inversions involve huge amounts of data and require a tight integration between numerical PDE solvers, data acquisition and processing systems, nonlinear optimization libraries, and job orchestration frameworks. To this end we created a set of libraries and applications revolving around Salvus (http://salvus.io), a novel software package designed to solve large-scale full waveform inverse problems. This presentation focuses on solving passive source seismic full waveform inversions from local to global scales with Salvus. We discuss (i) design choices for the aforementioned components required for full waveform modeling and inversion, (ii) their implementation in the Salvus framework, and (iii) how it is all tied together by a usable workflow system. We combine state-of-the-art algorithms ranging from high-order finite-element solutions of the wave equation to quasi-Newton optimization algorithms using trust-region methods that can handle inexact derivatives. All is steered by an automated interactive graph-based workflow framework capable of orchestrating all necessary pieces. This naturally facilitates the creation of new Earth models and hopefully sparks new scientific insights. Additionally, and even more importantly, it enhances reproducibility and reliability of the final results.

  3. Structure of graphane polymorphs

    Science.gov (United States)

    Belenkova, T. E.; Greshyakov, V. A.; Chernov, V. M.; Belenkov, E. A.

    2017-11-01

    Calculations of the structure and electronic properties for five structural variations of graphane were performed within the framework of density functional theory (DFT) with generalized gradient approximations (GGA). The electron densities of states and band structure of graphene crystals have been calculated. It has been established that the band gap for graphane polymorphs varies from 5.50 eV to 5.65 eV. Sublimation energy of graphane layers with different structure was varying from 11.33 to 11.48 eV per C-H molecular group.

  4. A new derived and highly polymorphic chromosomal race of Liolaemus monticola (Iguanidae) from the 'Norte Chico' of Chile.

    Science.gov (United States)

    Lamborot, M

    1998-06-01

    A multiple Robertsonian fission chromosomal race of the Liolaemus monticola complex in Chile is described and is shown to be the most derived and the most complex among the Liolaemus examined thus far. The 29 karyotyped lizards analysed from the locality of Mina Hierro Viejo, Petorca, Provincia de Valparaiso, Chile, exhibited a diploid chromosomal number ranging from 42 to 44, and several polymorphisms. The polymorphisms included: a pair 1 fission; a pair 2 fission plus a pericentric inversion in one of the fission products, which moved the NOR and satellite from the tip of the long arm of the metacentric 2 to the short arm of the fission product; a fission in pair 3; a polymorphism for an enlarged chromosome pair 6; and a polymorphism for a pericentric inversion in pair 7. This population is fixed for a fission of chromosome pair 4. A total of 76% of the lizards analysed were polymorphic for one or more pairs of chromosomes. We have compared these data with other Liolaemus monticola chromosomal races and calculated the Hardy-Weinberg ratios for the polymorphic chromosome pairs in this Multiple-Fission race. Karyotypic differences between the Northern (2n = 38-40) and the Multiple-Fission (2n = 42-44) races were attributed mainly to Robertsonian fissions, an enlarged chromosome and pericentric inversions involving the macrochromosomes and one microchromosome pair.

  5. Methylenetetrahydrofolate reductase (MTHFR) gene polymorphism ...

    African Journals Online (AJOL)

    Administrator

    2011-10-19

    Oct 19, 2011 ... Polymorphisms of the methylenetetrahydrofolate reductase (MTHFR) gene are associated with abortion, early embryo loss and recurrent spontaneous abortion in human. However, information on the association between MTHFR polymorphism and cow abortion is scarce. In the present study, the effects.

  6. Methylenetetrahydrofolate reductase (MTHFR) gene polymorphism ...

    African Journals Online (AJOL)

    Polymorphisms of the methylenetetrahydrofolate reductase (MTHFR) gene are associated with abortion, early embryo loss and recurrent spontaneous abortion in human. However, information on the association between MTHFR polymorphism and cow abortion is scarce. In the present study, the effects of MTHFR ...

  7. Analysis of RAE-1 inversion

    Science.gov (United States)

    Hedland, D. A.; Degonia, P. K.

    1974-01-01

    The RAE-1 spacecraft inversion performed October 31, 1972 is described based upon the in-orbit dynamical data in conjunction with results obtained from previously developed computer simulation models. The computer simulations used are predictive of the satellite dynamics, including boom flexing, and are applicable during boom deployment and retraction, inter-phase coast periods, and post-deployment operations. Attitude data, as well as boom tip data, were analyzed in order to obtain a detailed description of the dynamical behavior of the spacecraft during and after the inversion. Runs were made using the computer model and the results were analyzed and compared with the real time data. Close agreement between the actual recorded spacecraft attitude and the computer simulation results was obtained.

  8. Validation of OSIRIS Ozone Inversions

    Science.gov (United States)

    Gudnason, P.; Evans, W. F.; von Savigny, C.; Sioris, C.; Halley, C.; Degenstein, D.; Llewellyn, E. J.; Petelina, S.; Gattinger, R. L.; Odin Team

    2002-12-01

    The OSIRIS instrument onboard the Odin satellite, that was launched on February 20, 2001, is a combined optical spectrograph and infrared imager that obtains profil sets of atmospheric spectra from 280 to 800 nm when Odin scans the terrestrial limb. It has been possible to make a preliminary analysis of the ozone profiles using the Chappuis absorption feature. Three algorithms have been developed for ozone profile inversions from these limb spectra sets. We have dubbed these the Gattinger, Von Savigny-Flittner and DOAS methods. These are being evaluated against POAM and other satellite data. Based on performance, one of these will be selected for the operational algorithm. The infrared imager data have been used by Degenstein with the tomographic inversion procedure to derive ozone concentrations above 60 km. This paper will present some of these initial observations and indicate the best algorithm potential of OSIRIS to make spectacular advances in the study of terrestrial ozone.

  9. Inverse problem in transformation optics

    OpenAIRE

    Novitsky, Andrey V.

    2011-01-01

    The straightforward method of transformation optics implies that one starts from the coordinate transformation and determines the Jacobian matrix, the fields and material parameters of the cloak. However, the coordinate transformation appears as an optional function: it is not necessary to know it. We offer the solution of some sort of inverse problem: starting from the fields in the invisibility cloak we directly derive the permittivity and permeability tensors of the cloaking shell. This ap...

  10. Fourier reconstruction with sparse inversions

    OpenAIRE

    Zwartjes, P.M.

    2005-01-01

    In seismic exploration an image of the subsurface is generated from seismic data through various data processing algorithms. When the data is not acquired on an equidistantly spaced grid, artifacts may result in the final image. Fourier reconstruction is an interpolation technique that can reduce these artifacts by generating uniformly sampled data from such non-uniformly sampled data. The method works by estimating via least-squares inversion the Fourier coefficients that describe the non-un...

  11. The Inverse of Banded Matrices

    Science.gov (United States)

    2013-01-01

    for reducing this burden, to Washington Headquarters Services, Directorate for Information Operations and Reports, 1215 Jefferson Davis Highway, Suite ...numbers of summed or subtracted terms in computing the inverse of a term of an upper (lower) triangular matrix are the generalized order-k Fibonacci ... Fibonacci numbers are the usual Fibonacci numbers, that is, f 2m = Fm (mth Fibonacci number). When also k = 3, c1 = c2 = c3 = 1, then the generalized order-3

  12. Inverse-magnetron mass spectrometer

    International Nuclear Information System (INIS)

    Pakulin, V.N.

    1979-01-01

    Considered is the operation of a typical magnetron mass spectrometer with an internal ion source and that of an inverse magnetron mass spectrometer with an external ion source. It is found that for discrimination of the same mass using the inverse design of mass spectrometers it is possible to employ either r 2 /r 1 times lesser magnetic fields at equal accelerating source-collector voltages, or r 2 /r 1 higher accelerating voltages at equal magnetic fields, as compared to the typical design (r 1 and r 2 being radii of the internal and external electrodes of the analyser, respectively). The design of an inverse-magnetron mass spectrometer is described. The mass analyzer is formed by a cylindrical electrode of 3 mm diameter and a coaxial tubular cylinder of 55 mm diameter. External to the analyzer is an ionizing chamber at the pressure of up to 5x10 -6 torr. The magnetic field along the chamber axis produced by a solenoid was 300 Oe. At the accelerating voltage of 100 V and mass 28, the spectrometer has a resolution of 30 at a half-peak height

  13. GGC and StuI polymorphism on the androgen receptor gene in endometrial cancer patients

    International Nuclear Information System (INIS)

    Sasaki, Masahiro; Karube, Akihiro; Karube, Yuko; Watari, Michiko; Sakuragi, Noriaki; Fujimoto, Seiichiro; Dahiya, Rajvir

    2005-01-01

    Androgens have an anti-proliferative effect on endometrial cells. Human androgen receptor (AR) gene contains two polymorphic short tandem repeats of GGC and CAG, and a single-nucleotide polymorphism on exon 1 that is recognized by the restriction enzyme, StuI. Prior studies have shown that the lengths of the CAG repeat are inversely and linearly related to AR activity and associated with endometrial cancer. However, little is known about the GGC repeat and the StuI polymorphism of the AR gene. Thus, we investigated whether these AR polymorphisms are risk factors for endometrial cancer. To test this hypothesis, the genetic distributions of these polymorphisms were investigated in blood samples from endometrial cancer patients and healthy controls. The allelic and genotyping profiles were analyzed by polymerase chain reaction (PCR), PCR-restriction fragment length polymorphism (PCR-RFLP), and direct DNA sequencing, and analyzed statistically. The GGC repeat was significantly longer in endometrial cancer patients as compared to normal healthy controls. In general, an increased risk of endometrial cancer was found with increasing GGC repeat. The relative risk for the 17 GGC repeat was greater than 4, as compared to controls. However, the StuI polymorphism was not significantly different between patients and controls. The findings suggest that increased numbers of GGC repeat on the AR gene may be a risk factor for endometrial cancer

  14. Conformational polymorphs of a novel TCNQ derivative carrying an acetylene group

    Science.gov (United States)

    Iida, Yuki; Kataoka, Makoto; Okuno, Tsunehisa

    2018-01-01

    TCNQ is one of the most important organic acceptors and lots of its derivatives have been prepared. However the reports on their crystal polymorphs are limited to their complexes, and simple polymorphs of TCNQ derivatives are uncommon. We succeeded in preparation of a novel TCNQ derivative, 2,2'-(2-(prop-2-yn-1-yloxy)cyclohexa-2,5-diene-1,4-diylidene)dimalononitrile, having a propynyloxy group on a substituent. This compound was found to have two crystal polymorphs depending on a solvent for recrystallization. In polymorph I, dimeric hydrogen bonds are formed between acetylenic hydrogens and cyano nitrogens with the molecule in an inversion symmetry. While, in polymorph II, the molecules make intermolecular hydrogen bonds between acetylenic hydrogens and cyano nitrogens with the molecule in 21 symmetry, forming a hydrogen bonded molecular helix along the b axis. Besides patterns of the intermolecular hydrogen bonds, difference was recognized in conformation of propynyloxy group. The molecule has an anti conformation in polymorph I and a gauche conformation in polymorph II. DFT calculation indicates that the anti conformer is less stable than the gauche one. But a solvation model suggests the anti conformer is estimated to be more stable in a toluene solution.

  15. Inverse problems for difference equations with quadratic ...

    African Journals Online (AJOL)

    Inverse problems for difference equations with quadratic Eigenparameter dependent boundary conditions. Sonja Currie, Anne D. Love. Abstract. This paper inductively investigates an inverse problem for difference boundary value problems with boundary conditions that depend quadratically on the eigenparameter.

  16. Chromosomal inversions effect body size and shape in different breeding resources in Drosophila buzzatii.

    Science.gov (United States)

    Fernández Iriarte, P J; Norry, F M; Hasson, E R

    2003-07-01

    The cactophilic Drosophila buzzatii provides an excellent model for the study of reaction norms across discrete environments because it breeds on rotting tissues (rots) of very different cactus species. Here we test the possible effects of second chromosome inversions on body size and shape (wing loading) across suitable natural breeding substrates. Using homokaryotypic stocks derived from several lines homozygous for four naturally occurring chromosomal inversions, we show that arrangements significantly affect size-related traits and wing loading. In addition, karyotypes show differing effects, across natural breeding resources, for wing loading. The 2st and 2jz(3) arrangements decrease and the 2j arrangement increases wing loading. For thorax length and wing loading, karyotypic correlations across host plants are slightly lower in females than in males. These results support the hypothesis that these traits have a genetic basis associated with the inversion polymorphism.

  17. Chromosomal evolution in the Drosophila cardini group (Diptera: Drosophilidae): photomaps and inversion analysis.

    Science.gov (United States)

    Cordeiro, Juliana; De Toni, Daniela Cristina; da Silva, Gisele de Souza; Valente, Vera Lucia da Silva

    2014-10-01

    Detailed chromosome photomaps are the first step to develop further chromosomal analysis to study the evolution of the genetic architecture in any set of species, considering that chromosomal rearrangements, such as inversions, are common features of genome evolution. In this report, we analyzed inversion polymorphisms in 25 different populations belonging to six neotropical species in the cardini group: Drosophila cardini, D. cardinoides, D. neocardini, D. neomorpha, D. parthenogenetica and D. polymorpha. Furthermore, we present the first reference photomaps for the Neotropical D. cardini and D. parthenogenetica and improved photomaps for D. cardinoides, D. neocardini and D. polymorpha. We found 19 new inversions for these species. An exhaustive pairwise comparison of the polytene chromosomes was conducted for the six species in order to understand evolutionary patterns of their chromosomes.

  18. Fast computation of the inverse CMH model

    Science.gov (United States)

    Patel, Umesh D.; Della Torre, Edward

    2001-12-01

    A fast computational method based on differential equation approach for inverse Della Torre, Oti, Kádár (DOK) model has been extended for the inverse Complete Moving Hysteresis (CMH) model. A cobweb technique for calculating the inverse CMH model is also presented. The two techniques differ from the point of view of flexibility, accuracy, and computation time. Simulation results of the inverse computation for both methods are presented.

  19. LA INVERSION INMOBILIARIA INDIRECTA EN ESPANA.

    OpenAIRE

    Joan MONTLLOR-SERRATS; Anna M. PANOSA-GUBAU

    2013-01-01

    En este articulo se revisan los instrumentos de inversion indirecta inmobiliaria en Espana, desde la creacion en 1992 de los Fondos y Sociedades de Inversion inmobiliaria (FII y SII) hasta la creacion de la primera Sociedad de inversion del mercado inmobiliario (SOCIMI) en 2013. Se analizan las caracteristicas de los mismos y asimismo los motivos por los cuales estas figuras de inversion no han tenido mucha demanda hasta el momento, en comparacion con los REITs (Real Estate Investment Trusts)...

  20. Codimension zero laminations are inverse limits

    OpenAIRE

    Lozano Rojo, Álvaro

    2013-01-01

    The aim of the paper is to investigate the relation between inverse limit of branched manifolds and codimension zero laminations. We give necessary and sufficient conditions for such an inverse limit to be a lamination. We also show that codimension zero laminations are inverse limits of branched manifolds. The inverse limit structure allows us to show that equicontinuous codimension zero laminations preserves a distance function on transversals.

  1. Single Nucleotide Polymorphism

    DEFF Research Database (Denmark)

    Børsting, Claus; Pereira, Vania; Andersen, Jeppe Dyrberg

    2014-01-01

    and briefly describe the methods that are preferred for SNP typing in forensic genetics. In addition, we will illustrate how SNPs can be used as investigative leads in the police investigation by discussing the use of ancestry informative markers and forensic DNA phenotyping. Modern DNA sequencing......Single nucleotide polymorphisms (SNPs) are the most frequent DNA sequence variations in the genome. They have been studied extensively in the last decade with various purposes in mind. In this chapter, we will discuss the advantages and disadvantages of using SNPs for human identification...... technologies (also called next generation sequencing or NGS) have the potential to completely transform forensic genetic investigations as we know them today. Here, we will make a short introduction to NGS and explain how NGS may combine analysis of the traditional forensic genetic markers with analysis...

  2. Inversion: A Most Useful Kind of Transformation.

    Science.gov (United States)

    Dubrovsky, Vladimir

    1992-01-01

    The transformation assigning to every point its inverse with respect to a circle with given radius and center is called an inversion. Discusses inversion with respect to points, circles, angles, distances, space, and the parallel postulate. Exercises related to these topics are included. (MDH)

  3. The effect of inversion at 8p23 on BLK association with lupus in Caucasian population.

    Directory of Open Access Journals (Sweden)

    Bahram Namjou

    Full Text Available To explore the potential influence of the polymorphic 8p23.1 inversion on known autoimmune susceptibility risk at or near BLK locus, we validated a new bioinformatics method that utilizes SNP data to enable accurate, high-throughput genotyping of the 8p23.1 inversion in a Caucasian population.Principal components analysis (PCA was performed using markers inside the inversion territory followed by k-means cluster analyses on 7416 European derived and 267 HapMaP CEU and TSI samples. A logistic regression conditional analysis was performed.Three subgroups have been identified; inversion homozygous, heterozygous and non-inversion homozygous. The status of inversion was further validated using HapMap samples that had previously undergone Fluorescence in situ hybridization (FISH assays with a concordance rate of above 98%. Conditional analyses based on the status of inversion were performed. We found that overall association signals in the BLK region remain significant after controlling for inversion status. The proportion of lupus cases and controls (cases/controls in each subgroup was determined to be 0.97 for the inverted homozygous group (1067 cases and 1095 controls, 1.12 for the inverted heterozygous group (1935 cases 1717 controls and 1.36 for non-inverted subgroups (924 cases and 678 controls. After calculating the linkage disequilibrium between inversion status and lupus risk haplotype we found that the lupus risk haplotype tends to reside on non-inversion background. As a result, a new association effect between non-inversion status and lupus phenotype has been identified ((p = 8.18×10(-7, OR = 1.18, 95%CI = 1.10-1.26.Our results demonstrate that both known lupus risk haplotype and inversion status act additively in the pathogenesis of lupus. Since inversion regulates expression of many genes in its territory, altered expression of other genes might also be involved in the development of lupus.

  4. Inversion of GPS meteorology data

    Directory of Open Access Journals (Sweden)

    K. Hocke

    Full Text Available The GPS meteorology (GPS/MET experiment, led by the Universities Corporation for Atmospheric Research (UCAR, consists of a GPS receiver aboard a low earth orbit (LEO satellite which was launched on 3 April 1995. During a radio occultation the LEO satellite rises or sets relative to one of the 24 GPS satellites at the Earth's horizon. Thereby the atmospheric layers are successively sounded by radio waves which propagate from the GPS satellite to the LEO satellite. From the observed phase path increases, which are due to refraction of the radio waves by the ionosphere and the neutral atmosphere, the atmospheric parameter refractivity, density, pressure and temperature are calculated with high accuracy and resolution (0.5–1.5 km. In the present study, practical aspects of the GPS/MET data analysis are discussed. The retrieval is based on the Abelian integral inversion of the atmospheric bending angle profile into the refractivity index profile. The problem of the upper boundary condition of the Abelian integral is described by examples. The statistical optimization approach which is applied to the data above 40 km and the use of topside bending angle profiles from model atmospheres stabilize the inversion. The retrieved temperature profiles are compared with corresponding profiles which have already been calculated by scientists of UCAR and Jet Propulsion Laboratory (JPL, using Abelian integral inversion too. The comparison shows that in some cases large differences occur (5 K and more. This is probably due to different treatment of the upper boundary condition, data runaways and noise. Several temperature profiles with wavelike structures at tropospheric and stratospheric heights are shown. While the periodic structures at upper stratospheric heights could be caused by residual errors of the ionospheric correction method, the periodic temperature fluctuations at heights below 30 km are most likely caused by atmospheric waves (vertically

  5. Inverse problem in transformation optics

    DEFF Research Database (Denmark)

    Novitsky, Andrey

    2011-01-01

    . We offer the solution of some sort of inverse problem: starting from the fields in the invisibility cloak we directly derive the permittivity and permeability tensors of the cloaking shell. This approach can be useful for finding material parameters for the specified electromagnetic fields......The straightforward method of transformation optics implies that one starts from the coordinate transformation and determines the Jacobian matrix, the fields and material parameters of the cloak. However, the coordinate transformation appears as an optional function: it is not necessary to know it...... in the cloaking shell without knowing the coordinate transformation....

  6. Iterative optimization in inverse problems

    CERN Document Server

    Byrne, Charles L

    2014-01-01

    Iterative Optimization in Inverse Problems brings together a number of important iterative algorithms for medical imaging, optimization, and statistical estimation. It incorporates recent work that has not appeared in other books and draws on the author's considerable research in the field, including his recently developed class of SUMMA algorithms. Related to sequential unconstrained minimization methods, the SUMMA class includes a wide range of iterative algorithms well known to researchers in various areas, such as statistics and image processing. Organizing the topics from general to more

  7. Polymorphism in glasses

    International Nuclear Information System (INIS)

    Landa, L.M.; Nikolaeva, I.N.

    1979-01-01

    To defect phase interfaces and spasmodic properties change, the inhomogeneity and the second radiation effects in quartz glass, metamict phase and intermediate states have been investigated. When irradiating with fast neutrons the transformation of quartz glass - metamict phase occurs completely. The transformation is completed at 2x10 20 part./cm 2 dose. Thermal treatment not only increases the number of inhomogeneities but also results in increasing quartz glass density. Annealing transforms the metamict phase into common quartz glass at 1400 K. The fact, that thermal treatment results in the complete transformation of metamict phase into quartz glass, and the inverse transformation occurs only partially, is quite regular, as the metamict phase has a lesser entropy and is a more ordered state. It is shown that different amorphous phases of a chemical composition have different structures and properties, that there are interfaces between them, and the transformation from one state to another in microvolumes is realized spasmodically and requires expenditure of energy

  8. Inverse design of multicomponent assemblies

    Science.gov (United States)

    Piñeros, William D.; Lindquist, Beth A.; Jadrich, Ryan B.; Truskett, Thomas M.

    2018-03-01

    Inverse design can be a useful strategy for discovering interactions that drive particles to spontaneously self-assemble into a desired structure. Here, we extend an inverse design methodology—relative entropy optimization—to determine isotropic interactions that promote assembly of targeted multicomponent phases, and we apply this extension to design interactions for a variety of binary crystals ranging from compact triangular and square architectures to highly open structures with dodecagonal and octadecagonal motifs. We compare the resulting optimized (self- and cross) interactions for the binary assemblies to those obtained from optimization of analogous single-component systems. This comparison reveals that self-interactions act as a "primer" to position particles at approximately correct coordination shell distances, while cross interactions act as the "binder" that refines and locks the system into the desired configuration. For simpler binary targets, it is possible to successfully design self-assembling systems while restricting one of these interaction types to be a hard-core-like potential. However, optimization of both self- and cross interaction types appears necessary to design for assembly of more complex or open structures.

  9. LHC Report: 2 inverse femtobarns!

    CERN Multimedia

    Mike Lamont for the LHC Team

    2011-01-01

    The LHC is enjoying a confluence of twos. This morning (Friday 5 August) we passed 2 inverse femtobarns delivered in 2011; the peak luminosity is now just over 2 x1033 cm-2s-1; and recently fill 2000 was in for nearly 22 hours and delivered around 90 inverse picobarns, almost twice 2010's total.   In order to increase the luminosity we can increase of number of bunches, increase the number of particles per bunch, or decrease the transverse beam size at the interaction point. The beam size can be tackled in two ways: either reduce the size of the injected bunches or squeeze harder with the quadrupole magnets situated on either side of the experiments. Having increased the number of bunches to 1380, the maximum possible with a 50 ns bunch spacing, a one day meeting in Crozet decided to explore the other possibilities. The size of the beams coming from the injectors has been reduced to the minimum possible. This has brought an increase in the peak luminosity of about 50% and the 2 x 1033 cm...

  10. Inverse problems in systems biology

    International Nuclear Information System (INIS)

    Engl, Heinz W; Lu, James; Müller, Stefan; Flamm, Christoph; Schuster, Peter; Kügler, Philipp

    2009-01-01

    Systems biology is a new discipline built upon the premise that an understanding of how cells and organisms carry out their functions cannot be gained by looking at cellular components in isolation. Instead, consideration of the interplay between the parts of systems is indispensable for analyzing, modeling, and predicting systems' behavior. Studying biological processes under this premise, systems biology combines experimental techniques and computational methods in order to construct predictive models. Both in building and utilizing models of biological systems, inverse problems arise at several occasions, for example, (i) when experimental time series and steady state data are used to construct biochemical reaction networks, (ii) when model parameters are identified that capture underlying mechanisms or (iii) when desired qualitative behavior such as bistability or limit cycle oscillations is engineered by proper choices of parameter combinations. In this paper we review principles of the modeling process in systems biology and illustrate the ill-posedness and regularization of parameter identification problems in that context. Furthermore, we discuss the methodology of qualitative inverse problems and demonstrate how sparsity enforcing regularization allows the determination of key reaction mechanisms underlying the qualitative behavior. (topical review)

  11. A monoclinic polymorph of theophylline

    Directory of Open Access Journals (Sweden)

    Shuo Zhang

    2011-12-01

    Full Text Available A monoclinic polymorph of theophylline, C7H8N4O2, has been obtained from a chloroform/methanol mixture by evaporation under ambient conditions. The new polymorph crystallizes with two molecules in the asymmetric unit. The structure features intermolecular N—H...O hydrogen bonds, resulting in the formation of dimers between two crystallographically different molecules; each molecule acts as both donor and acceptor.

  12. Inverse problems and inverse scattering of plane waves

    CERN Document Server

    Ghosh Roy, Dilip N

    2001-01-01

    The purpose of this text is to present the theory and mathematics of inverse scattering, in a simple way, to the many researchers and professionals who use it in their everyday research. While applications range across a broad spectrum of disciplines, examples in this text will focus primarly, but not exclusively, on acoustics. The text will be especially valuable for those applied workers who would like to delve more deeply into the fundamentally mathematical character of the subject matter.Practitioners in this field comprise applied physicists, engineers, and technologists, whereas the theory is almost entirely in the domain of abstract mathematics. This gulf between the two, if bridged, can only lead to improvement in the level of scholarship in this highly important discipline. This is the book''s primary focus.

  13. Factor VIII (F8) inversions in severe hemophilia A: Male germ cell origin and diagnosis with RT-PCR

    Energy Technology Data Exchange (ETDEWEB)

    Antonarakis, S.E. [Geneva Medical School (Switzerland)]|[Johns Hopkins School of Medicine, Baltimore, MD (United States); Rossiter, J.P. [Johns Hopkins School of Medicine, Baltimore, MD (United States); Young, M. [Geneva Medical School (Switzerland)] [and others

    1994-09-01

    The Factor VIII (F8) gene, which is defective in hemophilia A, is located in the most telomeric megabase of Xq. Inversions due to intrachromosomal homologous recombination between mispaired copies of gene A located within intron 22 of the gene and about 500 kb telomeric to it account for nearly half of the cases of severe hemophilia A. We hypothesized that pairing of Xq with its homolog inhibits the inversion process, and that therefore the event originates predominantly in male germ cells. In all 21 informative cases in which the inversion originated in a maternal grandparent, DNA polymorphism analysis using markers within or very closely linked to F8, determined that it occurred in the male germline. In addition, all but one of 56 mothers of sporadic cases due to inversions were carriers. The data indicate that the F8 gene inversions leading to severe hemophilia A occur almost exclusively in male germ cells. The mean age of maternal grandfathers at the birth of their carrier daughters was 29.9 years (13 cases), i.e. not different from the mean paternal age in the general population, supporting the hypothesis that the inversions occur in meiosis. The inversions can be diagnosed by Southern blot analysis. For more rapid diagnosis we have used RT-PCR of RNA ectopically expressed in blood. Oligonucleotides were used to PCR amplify, after the initial RT reaction of RNA samples using random hexamers, either the normal transcript (F8 exons 21 to 24;312 bp product) or the novel abnormal transcript that is generated after the inversion. Both type 1 and 2 inversions can be recognized in affecteds and carriers by the presence of the diagnostic PcR product of 248 bp. Correct diagnoses were made in samples from 6 patients and 2 carriers with type 1 inversions, 2 patients and 2 carriers with type 2 inversions and 5 normal controls.

  14. Aragonite-Calcite Inversion During Biogenic Carbonate Sampling: Considerations for Interpreting Isotopic Measurements in Paleoclimate Studies

    Science.gov (United States)

    Waite, A. J.; Swart, P. K.

    2011-12-01

    As aragonite is the metastable polymorph of calcium carbonate, it lends itself to monotropic inversion to the more stable polymorph, calcite. This inversion is possible through an increase in the temperature and pressure conditions to which the sample is exposed and, although first noted nearly a century ago, has been primarily discussed in the context of sample roasting prior to analyses in paleoclimatological studies. Over the last several decades, however, researchers have found evidence to suggest that the friction associated with the sampling of biogenic carbonates via milling/drilling also induces inversion. Furthermore, this inversion may be associated with a shift in measured oxygen isotopic values and ultimately have significant implications for the interpretation of paleoclimatic reconstructions. Despite this, the isotopic heterogeneity of biogenic aragonite skeletons makes the effects of inversion challenging to test and the subject remains underrepresented in the literature. Here we present a first order study into the effects of milling on both the mineralogy and isotopic compositions measured in sclerosponges, corals, and molluscs. X-Ray diffraction analysis of samples hand ground with a mortar and pestle reveal 100% aragonitic skeletons. Conversely, samples milled with a computerized micromill show measurable inversion to calcite. On average, percent inversion of aragonite to calcite for individual specimens was 15% for sclerosponges, 16% for corals, and 9% for molluscs. Isotopic data from these specimens show that the higher the percentage of aragonite inverted to calcite, the more depleted the measured oxygen isotopic values. In the largest of the datasets (sclerosponges), it is evident that the range of oxygen isotope values from milled samples (-0.02 to +0.84%) exceeds the range in values for those samples which were hand ground and showed no inversion (+0.53 to +0.90%). This, coupled with the strong correlation between the two variables

  15. Statistical Inversion of Seismic Noise Inversion statistique du bruit sismique

    Directory of Open Access Journals (Sweden)

    Adler P. M.

    2006-11-01

    Full Text Available A systematic investigation of wave propagation in random media is presented. Spectral analysis, inversion of codas and attenuation of the direct wave front are studied for synthetic data obtained in isotropic or anisotropic, 2D or 3D media. A coda inversion process is developed and checked on two sets of real data. In both cases, it is possible to compare the correlation lengths obtained by inversion to characteristic lengths measured on seismic logs, for the full scale seismic survey, or on a thin section, for the laboratory experiment. These two experiments prove the feasibility and the efficiency of the statistical inversion of codas. Correct characteristic lengths can be obtained which cannot be determined by another method. Le problème de la géophysique est la recherche d'informations concernant le sous-sol, dans des signaux sismiques enregistrés en surface ou dans des puits. Ces informations sont habituellement recherchées sous forme déterministe, c'est-à-dire sous la forme de la donnée en chaque point d'une valeur du paramètre étudié. Notre point de vue est différent puisque notre objectif est de déduire certaines propriétés statistiques du milieu, supposé hétérogène, à partir des sismogrammes enregistrés après propagation. Il apparaît alors deux moyens de remplir l'objectif fixé. Le premier est l'analyse spectrale des codas ; cette analyse permet de déterminer les tailles moyennes des hétérogénéités du sous-sol. La deuxième possibilité est l'étude de l'atténuation du front direct de l'onde, qui conduit aussi à la connaissance des longueurs caractéristiques du sous-sol ; contrairement à la première méthode, elle ne semble pas pouvoir être transposée efficacement à des cas réels. Dans la première partie, on teste numériquement la proportionnalité entre le facteur de rétrodiffraction, relié aux propriétés statistiques du milieu, et le spectre des codas. Les distributions de vitesse, à valeur

  16. Solution for Ill-Posed Inverse Kinematics of Robot Arm by Network Inversion

    Directory of Open Access Journals (Sweden)

    Takehiko Ogawa

    2010-01-01

    Full Text Available In the context of controlling a robot arm with multiple joints, the method of estimating the joint angles from the given end-effector coordinates is called inverse kinematics, which is a type of inverse problems. Network inversion has been proposed as a method for solving inverse problems by using a multilayer neural network. In this paper, network inversion is introduced as a method to solve the inverse kinematics problem of a robot arm with multiple joints, where the joint angles are estimated from the given end-effector coordinates. In general, inverse problems are affected by ill-posedness, which implies that the existence, uniqueness, and stability of their solutions are not guaranteed. In this paper, we show the effectiveness of applying network inversion with regularization, by which ill-posedness can be reduced, to the ill-posed inverse kinematics of an actual robot arm with multiple joints.

  17. Inverse problem in neutron reflection

    International Nuclear Information System (INIS)

    Zhou, Xiao-Lin; Felcher, G.P.; Chen, Sow-Hsin

    1991-05-01

    Reflectance and transmittance of neutrons from a thin film deposited on a bulk substrate are derived from solution of Schroedinger wave equation in the material medium with an optical potential. A closed-form solution for the complex reflectance and transmittance is obtained in an approximation where the curvature of the scattering length density profile in the film is small. This closed-form solution reduces to all the known approximations in various limiting cases and is shown to be more accurate than the existing approximations. The closed-form solution of the reflectance is used as a starting point for an inversion algorithm whereby the reflectance data are inverted by a matrix iteration scheme to obtain the scattering length density distribution in the film. A preliminary test showed that the inverted profile is accurate for the linear scattering length density distribution but falls short in the case of an exponential distribution. 30 refs., 7 figs., 1 tab

  18. Wake Vortex Inverse Model User's Guide

    Science.gov (United States)

    Lai, David; Delisi, Donald

    2008-01-01

    NorthWest Research Associates (NWRA) has developed an inverse model for inverting landing aircraft vortex data. The data used for the inversion are the time evolution of the lateral transport position and vertical position of both the port and starboard vortices. The inverse model performs iterative forward model runs using various estimates of vortex parameters, vertical crosswind profiles, and vortex circulation as a function of wake age. Forward model predictions of lateral transport and altitude are then compared with the observed data. Differences between the data and model predictions guide the choice of vortex parameter values, crosswind profile and circulation evolution in the next iteration. Iterations are performed until a user-defined criterion is satisfied. Currently, the inverse model is set to stop when the improvement in the rms deviation between the data and model predictions is less than 1 percent for two consecutive iterations. The forward model used in this inverse model is a modified version of the Shear-APA model. A detailed description of this forward model, the inverse model, and its validation are presented in a different report (Lai, Mellman, Robins, and Delisi, 2007). This document is a User's Guide for the Wake Vortex Inverse Model. Section 2 presents an overview of the inverse model program. Execution of the inverse model is described in Section 3. When executing the inverse model, a user is requested to provide the name of an input file which contains the inverse model parameters, the various datasets, and directories needed for the inversion. A detailed description of the list of parameters in the inversion input file is presented in Section 4. A user has an option to save the inversion results of each lidar track in a mat-file (a condensed data file in Matlab format). These saved mat-files can be used for post-inversion analysis. A description of the contents of the saved files is given in Section 5. An example of an inversion input

  19. Inversion 2La is associated with enhanced desiccation resistance in Anopheles gambiae

    Directory of Open Access Journals (Sweden)

    Costantini Carlo

    2009-09-01

    Full Text Available Abstract Background Anopheles gambiae, the principal vector of malignant malaria in Africa, occupies a wide range of habitats. Environmental flexibility may be conferred by a number of chromosomal inversions non-randomly associated with aridity, including 2La. The purpose of this study was to determine the physiological mechanisms associated with the 2La inversion that may result in the preferential survival of its carriers in hygrically-stressful environments. Methods Two homokaryotypic populations of A. gambiae (inverted 2La and standard 2L+a were created from a parental laboratory colony polymorphic for 2La and standard for all other known inversions. Desiccation resistance, water, energy and dry mass of adult females of both populations were compared at several ages and following acclimation to a more arid environment. Results Females carrying 2La were significantly more resistant to desiccation than 2L+a females at emergence and four days post-emergence, for different reasons. Teneral 2La females had lower rates of water loss than their 2L+a counterparts, while at four days, 2La females had higher initial water content. No differences in desiccation resistance were found at eight days, with or without acclimation. However, acclimation resulted in both populations significantly reducing their rates of water loss and increasing their desiccation resistance. Acclimation had contrasting effects on the body characteristics of the two populations: 2La females boosted their glycogen stores and decreased lipids, whereas 2La females did the contrary. Conclusion Variation in rates of water loss and response to acclimation are associated with alternative arrangements of the 2La inversion. Understanding the mechanisms underlying these traits will help explain how inversion polymorphisms permit exploitation of a heterogeneous environment by this disease vector.

  20. Optimization and inverse problems in electromagnetism

    CERN Document Server

    Wiak, Sławomir

    2003-01-01

    From 12 to 14 September 2002, the Academy of Humanities and Economics (AHE) hosted the workshop "Optimization and Inverse Problems in Electromagnetism". After this bi-annual event, a large number of papers were assembled and combined in this book. During the workshop recent developments and applications in optimization and inverse methodologies for electromagnetic fields were discussed. The contributions selected for the present volume cover a wide spectrum of inverse and optimal electromagnetic methodologies, ranging from theoretical to practical applications. A number of new optimal and inverse methodologies were proposed. There are contributions related to dedicated software. Optimization and Inverse Problems in Electromagnetism consists of three thematic chapters, covering: -General papers (survey of specific aspects of optimization and inverse problems in electromagnetism), -Methodologies, -Industrial Applications. The book can be useful to students of electrical and electronics engineering, computer sci...

  1. Identifiability Scaling Laws in Bilinear Inverse Problems

    OpenAIRE

    Choudhary, Sunav; Mitra, Urbashi

    2014-01-01

    A number of ill-posed inverse problems in signal processing, like blind deconvolution, matrix factorization, dictionary learning and blind source separation share the common characteristic of being bilinear inverse problems (BIPs), i.e. the observation model is a function of two variables and conditioned on one variable being known, the observation is a linear function of the other variable. A key issue that arises for such inverse problems is that of identifiability, i.e. whether the observa...

  2. Lectures on the inverse scattering method

    International Nuclear Information System (INIS)

    Zakharov, V.E.

    1983-06-01

    In a series of six lectures an elementary introduction to the theory of inverse scattering is given. The first four lectures contain a detailed theory of solitons in the framework of the KdV equation, together with the inverse scattering theory of the one-dimensional Schroedinger equation. In the fifth lecture the dressing method is described, while the sixth lecture gives a brief review of the equations soluble by the inverse scattering method. (author)

  3. Inverse kinematics of OWI-535 robotic arm

    OpenAIRE

    DEBENEC, PRIMOŽ

    2015-01-01

    The thesis aims to calculate the inverse kinematics for the OWI-535 robotic arm. The calculation of the inverse kinematics determines the joint parameters that provide the right pose of the end effector. The pose consists of the position and orientation, however, we will focus only on the second one. Due to arm limitations, we have created our own type of the calculation of the inverse kinematics. At first we have derived it only theoretically, and then we have transferred the derivation into...

  4. Automatic Flight Controller With Model Inversion

    Science.gov (United States)

    Meyer, George; Smith, G. Allan

    1992-01-01

    Automatic digital electronic control system based on inverse-model-follower concept being developed for proposed vertical-attitude-takeoff-and-landing airplane. Inverse-model-follower control places inverse mathematical model of dynamics of controlled plant in series with control actuators of controlled plant so response of combination of model and plant to command is unity. System includes feedback to compensate for uncertainties in mathematical model and disturbances imposed from without.

  5. Time-reversal and Bayesian inversion

    Science.gov (United States)

    Debski, Wojciech

    2017-04-01

    Probabilistic inversion technique is superior to the classical optimization-based approach in all but one aspects. It requires quite exhaustive computations which prohibit its use in huge size inverse problems like global seismic tomography or waveform inversion to name a few. The advantages of the approach are, however, so appealing that there is an ongoing continuous afford to make the large inverse task as mentioned above manageable with the probabilistic inverse approach. One of the perspective possibility to achieve this goal relays on exploring the internal symmetry of the seismological modeling problems in hand - a time reversal and reciprocity invariance. This two basic properties of the elastic wave equation when incorporating into the probabilistic inversion schemata open a new horizons for Bayesian inversion. In this presentation we discuss the time reversal symmetry property, its mathematical aspects and propose how to combine it with the probabilistic inverse theory into a compact, fast inversion algorithm. We illustrate the proposed idea with the newly developed location algorithm TRMLOC and discuss its efficiency when applied to mining induced seismic data.

  6. Chromatid Painting for Chromosomal Inversion Detection Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose the continued development of a novel approach to the detection of chromosomal inversions. Transmissible chromosome aberrations (translocations and...

  7. Preparation and evaluation of famotidine polymorphs.

    Science.gov (United States)

    Nagaraju, Ravouru; Prathusha, Ande Penchala; Subhash Chandra Bose, Penjury; Kaza, Rajesh; Bharathi, Koganti

    2010-06-01

    The main objective of this study was to compare the behaviour of drug release among the famotidine polymorphs prepared by using various additives and solvents, by solvent evaporation method. The famotidine polyvinyl pyrrolidone polymorphs with different concentrations (0.5, 1 and 1.5%) were prepared by using solvent evaporation method. In these polymorphs of different concentrations 1% w/v polymorphs showed better release. Similarly, famotidine polymorphs of Tween 80 with different concentrations, polyethylene glycol 1% w/v and methanol was prepared. Famotidine polymorphs prepared the PVP (1% w/v) showed better drug release and solubility. DSC, FTIR, SEM and XRD studies were carried out. DSC studies revealed that PVP polymorphs were found to stable compared to other polymorphs. FTIR studies of the polymorphs prepared indicated that there was an interaction found in all polymorphs except PVP polymorphs indicating the absence of drug-additive interaction. SEM studies of PVP and methanol polymorphs revealed that they are tabular and prismatic and columnar respectively. These changes in morphology were due to variations in face dimensions and also properties of additives and solvent used in the preparation. XRD studies revealed that there is an increase in crystallinity in methanol polymorphs when compared to PVP polymorphs and pure drug. The mechanism of drug release was determined using zero order, first order and Hixon-Crowel equations. From the drug release kinetics these polymorphs followed first order and Hixon-Crowel release kinetics, exhibited fair linearity in their dissolution data. Further, in vivo studies were carried out for the evaluation of antiulcer activity. Based upon the drug release pattern and its kinetics only two of the prepared polymorphs of famotidine i.e. famotidine PVP polymorphs and famotidine methanol polymorphs were selected for animal studies. Antiulcer studies were carried out using pylorus ligation model and estimation of antioxidant

  8. Molecular analysis of recombination in a family with Duchenne muscular dystrophy and a large pericentric X chromosome inversion

    Energy Technology Data Exchange (ETDEWEB)

    Shashi, V.; Golden, W.L.; Allinson, P.S. [Univ. of Virginia Health Sciences Center, Charlottesville, VA (United States)] [and others

    1996-06-01

    It has been demonstrated in animal studies that, in animals heterozygous for pericentric chromosomal inversions, loop formation is greatly reduced during meiosis. This results in absence of recombination within the inverted segment, with recombination seen only outside the inversion. A recent study in yeast has shown that telomeres, rather than centromeres, lead in chromosome movement just prior to meiosis and may be involved in promoting recombination. We studied by cytogenetic analysis and DNA polymorphisms the nature of meiotic recombination in a three-generation family with a large pericentric X chromosome inversion, inv(X)(p21.1q26), in which Duchenne muscular dystrophy (DMD) was cosegregating with the inversion. On DNA analysis there was no evidence of meiotic recombination between the inverted and normal X chromosomes in the inverted segment. Recombination was seen at the telomeric regions, Xp22 and Xq27-28. No deletion or point mutation was found on analysis of the DMD gene. On the basis of the FISH results, we believe that the X inversion is the mutation responsible for DMD in this family. Our results indicate that (1) pericentric X chromosome inversions result in reduction of recombination between the normal and inverted X chromosomes; (2) meiotic X chromosome pairing in these individuals is likely initiated at the telomeres; and (3) in this family DMD is caused by the pericentric inversion. 50 refs., 7 figs., 1 tab.

  9. A triclinic polymorph of bis(μ-di-tert-butylphosphanidobis[(di-tert-butylphosphanepalladium(I

    Directory of Open Access Journals (Sweden)

    Jens Breunig

    2012-06-01

    Full Text Available A new polymorph of the title compound, [Pd2(C8H18P2(C8H19P2], has been found. It belongs to the triclinic P-1 space group, whereas the known form [Leoni, Sommovigo, Pasquali, Sabatino & Braga (1992, J. Organomet. Chem. 423, 263–270] crystallizes in the monoclinic C2/c space group. The title compound features a dinuclear palladium complex with a planar central Pd2(μ-P2 core (r.m.s. deviation = 0.003 Å. The Pd—Pd distance of 2.5988 (5 Å is within the range of a PdI—PdI bond. The molecules of both polymorphs are located on a crystallographic centre of inversion. The molecular conformations of the two polymorphs are essentially identical. The crystal packing patterns, on the other hand, are slightly different.

  10. Laterally constrained inversion for CSAMT data interpretation

    Science.gov (United States)

    Wang, Ruo; Yin, Changchun; Wang, Miaoyue; Di, Qingyun

    2015-10-01

    Laterally constrained inversion (LCI) has been successfully applied to the inversion of dc resistivity, TEM and airborne EM data. However, it hasn't been yet applied to the interpretation of controlled-source audio-frequency magnetotelluric (CSAMT) data. In this paper, we apply the LCI method for CSAMT data inversion by preconditioning the Jacobian matrix. We apply a weighting matrix to Jacobian to balance the sensitivity of model parameters, so that the resolution with respect to different model parameters becomes more uniform. Numerical experiments confirm that this can improve the convergence of the inversion. We first invert a synthetic dataset with and without noise to investigate the effect of LCI applications to CSAMT data, for the noise free data, the results show that the LCI method can recover the true model better compared to the traditional single-station inversion; and for the noisy data, the true model is recovered even with a noise level of 8%, indicating that LCI inversions are to some extent noise insensitive. Then, we re-invert two CSAMT datasets collected respectively in a watershed and a coal mine area in Northern China and compare our results with those from previous inversions. The comparison with the previous inversion in a coal mine shows that LCI method delivers smoother layer interfaces that well correlate to seismic data, while comparison with a global searching algorithm of simulated annealing (SA) in a watershed shows that though both methods deliver very similar good results, however, LCI algorithm presented in this paper runs much faster. The inversion results for the coal mine CSAMT survey show that a conductive water-bearing zone that was not revealed by the previous inversions has been identified by the LCI. This further demonstrates that the method presented in this paper works for CSAMT data inversion.

  11. Ethnicity and lipoprotein(a) polymorphism in Native Mexican populations

    Science.gov (United States)

    Cardoso-Saldaña, Guillermo; De La Peña-Díaz, Aurora; Zamora-González, José; Gomez-Ortega, Rocio; Posadas-Romero, Carlos; Izaguirre-Avila, Raul; Malvido-Miranda, Elsa; Morales-Anduaga, Maria Elena; Angles-Cano, Eduardo

    2006-01-01

    Background Lp(a) is a lipoparticle of unknown function mainly present in primates and humans. It consists of a low-density lipoprotein and apo(a), a polymorphic glycoprotein. Apo(a) shares sequence homology and fibrin-binding with plasminogen inhibiting its fibrinolytic properties. Lp(a) is considered a link between atherosclerosis and thrombosis. Marked inter-ethnic differences in Lp(a) concentration related to the genetic polymorphism of apo(a), have been reported in several populations. Aim To study the structural and functional features of Lp(a) in three Native Mexican populations (Mayos, Mazahuas and Mayas) and in Mestizo subjects. Methods We determined the plasma concentration of Lp(a) by immunonephelometry, apo(a) isoforms by Western blot, Lp(a) fibrin-binding by immuno-enzymatic assay and STR polymorphic markers genetic analysis by capillary electrophoresis. Results Mestizos presented the less skewed distribution and the highest median Lp(a) concentration (13.25 mg/dL) relative to Mazahuas (8.2 mg/dL), Mayas (8.25 mg/dL) and Mayos (6.5 mg/dL). Phenotype distribution was different in Mayas and Mazahuas as compared to the Mestizo group. The higher Lp(a) fibrin-binding capacity was found in the Maya population. There was an inverse relationship between the size of apo(a) polymorphs and both Lp(a) levels and Lp(a) fibrin binding. Conclusion There is evidence of significative differences in Lp(a) plasma concentration and phenotype distribution in Native Mexican and the Mestizo group. PMID:16684693

  12. Genetic polymorphism of xenobiotic metabolising enzymes, diet and cancer susceptibility.

    Science.gov (United States)

    Reszka, Edyta; Wasowicz, Wojciech; Gromadzinska, Jolanta

    2006-10-01

    There is increasing evidence identifying the crucial role of numerous dietary components in modifying the process of carcinogenesis. The varied effects exerted by nutrient and non-nutrient dietary compounds on human health and cancer risk are one of the new challenges for nutritional sciences. In the present paper, an attempt is made to review the most recent epidemiological data on interactions between dietary factors and metabolic gene variants in terms of cancer risk. The majority of case-control studies indicate the significant relationship between cancer risk and polymorphic xenobiotic metabolising enzymes in relation to dietary components. The risk of colorectal cancer is associated not only with CYP2E1 high-activity alleles, but also GSTA1 low-activity alleles, among consumers of red or processed meat. Genetic polymorphisms of NAT1 and NAT2 may be also a breast-cancer susceptibility factor among postmenopausal women with a high intake of well-done meat. On the other hand, phytochemicals, especially isothiocyanates, have a protective effect against colorectal and lung cancers in individuals lacking GST genes. Moreover, polymorphism of GSTM1 seems to be involved in the dietary regulation of DNA damage. The European Prospective Investigation into Cancer and Nutrition study shows a significant inverse association between the polycyclic aromatic hydrocarbon-DNA adduct level and dietary antioxidants only among GSTM1-null individuals. However, the absence of a modulatory effect of polymorphic xenobiotic metabolising enzymes and diet on the development of cancer has been indicated by some epidemiological investigations. Studies of interactions between nutrients and genes may have great potential for exploring mechanisms, identifying susceptible populations/individuals and making practical use of study results to develop preventive strategies beneficial to human health.

  13. Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms

    NARCIS (Netherlands)

    Zapata, Luis; Ding, Jia; Willing, Eva Maria; Hartwig, Benjamin; Bezdan, Daniela; Jiao, Wen Biao; Patel, Vipul; James, Geo Velikkakam; Koornneef, Maarten; Ossowski, Stephan; Schneeberger, Korbinian

    2016-01-01

    Resequencing or reference-based assemblies reveal large parts of the small-scale sequence variation. However, they typically fail to separate such local variation into colinear and rearranged variation, because they usually do not recover the complement of large-scale rearrangements, including

  14. Inverse problems and uncertainty quantification

    KAUST Repository

    Litvinenko, Alexander

    2013-12-18

    In a Bayesian setting, inverse problems and uncertainty quantification (UQ)— the propagation of uncertainty through a computational (forward) model—are strongly connected. In the form of conditional expectation the Bayesian update becomes computationally attractive. This is especially the case as together with a functional or spectral approach for the forward UQ there is no need for time- consuming and slowly convergent Monte Carlo sampling. The developed sampling- free non-linear Bayesian update is derived from the variational problem associated with conditional expectation. This formulation in general calls for further discretisa- tion to make the computation possible, and we choose a polynomial approximation. After giving details on the actual computation in the framework of functional or spectral approximations, we demonstrate the workings of the algorithm on a number of examples of increasing complexity. At last, we compare the linear and quadratic Bayesian update on the small but taxing example of the chaotic Lorenz 84 model, where we experiment with the influence of different observation or measurement operators on the update.

  15. Package inspection using inverse diffraction

    Science.gov (United States)

    McAulay, Alastair D.

    2008-08-01

    More efficient cost-effective hand-held methods of inspecting packages without opening them are in demand for security. Recent new work in TeraHertz sources,1 millimeter waves, presents new possibilities. Millimeter waves pass through cardboard and styrofoam, common packing materials, and also pass through most materials except those with high conductivity like metals which block light and are easily spotted. Estimating refractive index along the path of the beam through the package from observations of the beam passing out of the package provides the necessary information to inspect the package and is a nonlinear problem. So we use a generalized linear inverse technique that we first developed for finding oil by reflection in geophysics.2 The computation assumes parallel slices in the packet of homogeneous material for which the refractive index is estimated. A beam is propagated through this model in a forward computation. The output is compared with the actual observations for the package and an update computed for the refractive indices. The loop is repeated until convergence. The approach can be modified for a reflection system or to include estimation of absorption.

  16. MODEL SELECTION FOR SPECTROPOLARIMETRIC INVERSIONS

    International Nuclear Information System (INIS)

    Asensio Ramos, A.; Manso Sainz, R.; Martínez González, M. J.; Socas-Navarro, H.; Viticchié, B.; Orozco Suárez, D.

    2012-01-01

    Inferring magnetic and thermodynamic information from spectropolarimetric observations relies on the assumption of a parameterized model atmosphere whose parameters are tuned by comparison with observations. Often, the choice of the underlying atmospheric model is based on subjective reasons. In other cases, complex models are chosen based on objective reasons (for instance, the necessity to explain asymmetries in the Stokes profiles) but it is not clear what degree of complexity is needed. The lack of an objective way of comparing models has, sometimes, led to opposing views of the solar magnetism because the inferred physical scenarios are essentially different. We present the first quantitative model comparison based on the computation of the Bayesian evidence ratios for spectropolarimetric observations. Our results show that there is not a single model appropriate for all profiles simultaneously. Data with moderate signal-to-noise ratios (S/Ns) favor models without gradients along the line of sight. If the observations show clear circular and linear polarization signals above the noise level, models with gradients along the line are preferred. As a general rule, observations with large S/Ns favor more complex models. We demonstrate that the evidence ratios correlate well with simple proxies. Therefore, we propose to calculate these proxies when carrying out standard least-squares inversions to allow for model comparison in the future.

  17. Inverse Problems and Uncertainty Quantification

    KAUST Repository

    Litvinenko, Alexander

    2014-01-06

    In a Bayesian setting, inverse problems and uncertainty quantification (UQ) - the propagation of uncertainty through a computational (forward) modelare strongly connected. In the form of conditional expectation the Bayesian update becomes computationally attractive. This is especially the case as together with a functional or spectral approach for the forward UQ there is no need for time- consuming and slowly convergent Monte Carlo sampling. The developed sampling- free non-linear Bayesian update is derived from the variational problem associated with conditional expectation. This formulation in general calls for further discretisa- tion to make the computation possible, and we choose a polynomial approximation. After giving details on the actual computation in the framework of functional or spectral approximations, we demonstrate the workings of the algorithm on a number of examples of increasing complexity. At last, we compare the linear and quadratic Bayesian update on the small but taxing example of the chaotic Lorenz 84 model, where we experiment with the influence of different observation or measurement operators on the update.

  18. Inverse problem in radionuclide transport

    International Nuclear Information System (INIS)

    Yu, C.

    1988-01-01

    The disposal of radioactive waste must comply with the performance objectives set forth in 10 CFR 61 for low-level waste (LLW) and 10 CFR 60 for high-level waste (HLW). To determine probable compliance, the proposed disposal system can be modeled to predict its performance. One of the difficulties encountered in such a study is modeling the migration of radionuclides through a complex geologic medium for the long term. Although many radionuclide transport models exist in the literature, the accuracy of the model prediction is highly dependent on the model parameters used. The problem of using known parameters in a radionuclide transport model to predict radionuclide concentrations is a direct problem (DP); whereas the reverse of DP, i.e., the parameter identification problem of determining model parameters from known radionuclide concentrations, is called the inverse problem (IP). In this study, a procedure to solve IP is tested, using the regression technique. Several nonlinear regression programs are examined, and the best one is recommended. 13 refs., 1 tab

  19. Reverse Universal Resolving Algorithm and inverse driving

    DEFF Research Database (Denmark)

    Pécseli, Thomas

    2012-01-01

    Inverse interpretation is a semantics based, non-standard interpretation of programs. Given a program and a value, an inverse interpreter finds all or one of the inputs, that would yield the given value as output with normal forward evaluation. The Reverse Universal Resolving Algorithm is a new v...

  20. Third Harmonic Imaging using a Pulse Inversion

    DEFF Research Database (Denmark)

    Rasmussen, Joachim; Du, Yigang; Jensen, Jørgen Arendt

    2011-01-01

    The pulse inversion (PI) technique can be utilized to separate and enhance harmonic components of a waveform for tissue harmonic imaging. While most ultrasound systems can perform pulse inversion, only few image the 3rd harmonic component. PI pulse subtraction can isolate and enhance the 3rd...

  1. Metaheuristic optimization of acoustic inverse problems.

    NARCIS (Netherlands)

    van Leijen, A.V.; Rothkrantz, L.; Groen, F.

    2011-01-01

    Swift solving of geoacoustic inverse problems strongly depends on the application of a global optimization scheme. Given a particular inverse problem, this work aims to answer the questions how to select an appropriate metaheuristic search strategy, and how to configure it for optimal performance.

  2. Inverse Filtering Techniques in Speech Analysis | Nwachuku ...

    African Journals Online (AJOL)

    inverse filtering' has been applied. The unifying features of these techniques are presented, namely: 1. a basis in the source-filter theory of speech production, 2. the use of a network whose transfer function is the inverse of the transfer function of ...

  3. Inverse m-matrices and ultrametric matrices

    CERN Document Server

    Dellacherie, Claude; San Martin, Jaime

    2014-01-01

    The study of M-matrices, their inverses and discrete potential theory is now a well-established part of linear algebra and the theory of Markov chains. The main focus of this monograph is the so-called inverse M-matrix problem, which asks for a characterization of nonnegative matrices whose inverses are M-matrices. We present an answer in terms of discrete potential theory based on the Choquet-Deny Theorem. A distinguished subclass of inverse M-matrices is ultrametric matrices, which are important in applications such as taxonomy. Ultrametricity is revealed to be a relevant concept in linear algebra and discrete potential theory because of its relation with trees in graph theory and mean expected value matrices in probability theory. Remarkable properties of Hadamard functions and products for the class of inverse M-matrices are developed and probabilistic insights are provided throughout the monograph.

  4. Fast wavelet based sparse approximate inverse preconditioner

    Energy Technology Data Exchange (ETDEWEB)

    Wan, W.L. [Univ. of California, Los Angeles, CA (United States)

    1996-12-31

    Incomplete LU factorization is a robust preconditioner for both general and PDE problems but unfortunately not easy to parallelize. Recent study of Huckle and Grote and Chow and Saad showed that sparse approximate inverse could be a potential alternative while readily parallelizable. However, for special class of matrix A that comes from elliptic PDE problems, their preconditioners are not optimal in the sense that independent of mesh size. A reason may be that no good sparse approximate inverse exists for the dense inverse matrix. Our observation is that for this kind of matrices, its inverse entries typically have piecewise smooth changes. We can take advantage of this fact and use wavelet compression techniques to construct a better sparse approximate inverse preconditioner. We shall show numerically that our approach is effective for this kind of matrices.

  5. Solving inverse problems of optical microlithography

    Science.gov (United States)

    Granik, Yuri

    2005-05-01

    The direct problem of microlithography is to simulate printing features on the wafer under given mask, imaging system, and process characteristics. The goal of inverse problems is to find the best mask and/or imaging system and/or process to print the given wafer features. In this study we will describe and compare solutions of inverse mask problems. Pixel-based inverse problem of mask optimization (or "layout inversion") is harder than inverse source problem, especially for partially-coherent systems. It can be stated as a non-linear constrained minimization problem over complex domain, with large number of variables. We compare method of Nashold projections, variations of Fienap phase-retrieval algorithms, coherent approximation with deconvolution, local variations, and descent searches. We propose electrical field caching technique to substantially speedup the searching algorithms. We demonstrate applications of phase-shifted masks, assist features, and maskless printing.

  6. Recurrent Neural Network for Computing Outer Inverse.

    Science.gov (United States)

    Živković, Ivan S; Stanimirović, Predrag S; Wei, Yimin

    2016-05-01

    Two linear recurrent neural networks for generating outer inverses with prescribed range and null space are defined. Each of the proposed recurrent neural networks is based on the matrix-valued differential equation, a generalization of dynamic equations proposed earlier for the nonsingular matrix inversion, the Moore-Penrose inversion, as well as the Drazin inversion, under the condition of zero initial state. The application of the first approach is conditioned by the properties of the spectrum of a certain matrix; the second approach eliminates this drawback, though at the cost of increasing the number of matrix operations. The cases corresponding to the most common generalized inverses are defined. The conditions that ensure stability of the proposed neural network are presented. Illustrative examples present the results of numerical simulations.

  7. Forward modeling. Route to electromagnetic inversion

    Energy Technology Data Exchange (ETDEWEB)

    Groom, R.; Walker, P. [PetRos EiKon Incorporated, Ontario (Canada)

    1996-05-01

    Inversion of electromagnetic data is a topical subject in the literature, and much time has been devoted to understanding the convergence properties of various inverse methods. The relative lack of success of electromagnetic inversion techniques is partly attributable to the difficulties in the kernel forward modeling software. These difficulties come in two broad classes: (1) Completeness and robustness, and (2) convergence, execution time and model simplicity. If such problems exist in the forward modeling kernel, it was demonstrated that inversion can fail to generate reasonable results. It was suggested that classical inversion techniques, which are based on minimizing a norm of the error between data and the simulated data, will only be successful when these difficulties in forward modeling kernels are properly dealt with. 4 refs., 5 figs.

  8. Stochastic Gabor reflectivity and acoustic impedance inversion

    Science.gov (United States)

    Hariri Naghadeh, Diako; Morley, Christopher Keith; Ferguson, Angus John

    2018-02-01

    To delineate subsurface lithology to estimate petrophysical properties of a reservoir, it is possible to use acoustic impedance (AI) which is the result of seismic inversion. To change amplitude to AI, removal of wavelet effects from the seismic signal in order to get a reflection series, and subsequently transforming those reflections to AI, is vital. To carry out seismic inversion correctly it is important to not assume that the seismic signal is stationary. However, all stationary deconvolution methods are designed following that assumption. To increase temporal resolution and interpretation ability, amplitude compensation and phase correction are inevitable. Those are pitfalls of stationary reflectivity inversion. Although stationary reflectivity inversion methods are trying to estimate reflectivity series, because of incorrect assumptions their estimations will not be correct, but may be useful. Trying to convert those reflection series to AI, also merging with the low frequency initial model, can help us. The aim of this study was to apply non-stationary deconvolution to eliminate time variant wavelet effects from the signal and to convert the estimated reflection series to the absolute AI by getting bias from well logs. To carry out this aim, stochastic Gabor inversion in the time domain was used. The Gabor transform derived the signal’s time–frequency analysis and estimated wavelet properties from different windows. Dealing with different time windows gave an ability to create a time-variant kernel matrix, which was used to remove matrix effects from seismic data. The result was a reflection series that does not follow the stationary assumption. The subsequent step was to convert those reflections to AI using well information. Synthetic and real data sets were used to show the ability of the introduced method. The results highlight that the time cost to get seismic inversion is negligible related to general Gabor inversion in the frequency domain. Also

  9. Influence of thiopurine methyltransferase gene polymorphism on ...

    Indian Academy of Sciences (India)

    Azza A. G. Tantawy

    2017-11-28

    Nov 28, 2017 ... Thiopurine methyltransferase (TPMT) gene polymorphism regulates thiopurine therapeutic efficacy and toxicity. The ... assessment, haematological panel investigations and TPMT gene polymorphism for G238C, G460A and A719G alleles assessment .... TPMT polymorphism in Egyptian cancer patients.

  10. Developments in inverse photoemission spectroscopy

    International Nuclear Information System (INIS)

    Sheils, W.; Leckey, R.C.G.; Riley, J.D.

    1996-01-01

    In the 1950's and 1960's, Photoemission Spectroscopy (PES) established itself as the major technique for the study of the occupied electronic energy levels of solids. During this period the field divided into two branches: X-ray Photoemission Spectroscopy (XPS) for photon energies greater than ∼l000eV, and Ultra-violet Photoemission Spectroscopy (UPS) for photon energies below ∼100eV. By the 1970's XPS and UPS had become mature techniques. Like XPS, BIS (at x-ray energies) does not have the momentum-resolving ability of UPS that has contributed much to the understanding of the occupied band structures of solids. BIS moved into a new energy regime in 1977 when Dose employed a Geiger-Mueller tube to obtain density of unoccupied states data from a tantalum sample at a photon energy of ∼9.7eV. At similar energies, the technique has since become known as Inverse Photoemission Spectroscopy (IPS), in acknowledgment of its complementary relationship to UPS and to distinguish it from the higher energy BIS. Drawing on decades of UPS expertise, IPS has quickly moved into areas of interest where UPS has been applied; metals, semiconductors, layer compounds, adsorbates, ferromagnets, and superconductors. At La Trobe University an IPS facility has been constructed. This presentation reports on developments in the experimental and analytical techniques of IPS that have been made there. The results of a study of the unoccupied bulk and surface bands of GaAs are presented

  11. Convex blind image deconvolution with inverse filtering

    Science.gov (United States)

    Lv, Xiao-Guang; Li, Fang; Zeng, Tieyong

    2018-03-01

    Blind image deconvolution is the process of estimating both the original image and the blur kernel from the degraded image with only partial or no information about degradation and the imaging system. It is a bilinear ill-posed inverse problem corresponding to the direct problem of convolution. Regularization methods are used to handle the ill-posedness of blind deconvolution and get meaningful solutions. In this paper, we investigate a convex regularized inverse filtering method for blind deconvolution of images. We assume that the support region of the blur object is known, as has been done in a few existing works. By studying the inverse filters of signal and image restoration problems, we observe the oscillation structure of the inverse filters. Inspired by the oscillation structure of the inverse filters, we propose to use the star norm to regularize the inverse filter. Meanwhile, we use the total variation to regularize the resulting image obtained by convolving the inverse filter with the degraded image. The proposed minimization model is shown to be convex. We employ the first-order primal-dual method for the solution of the proposed minimization model. Numerical examples for blind image restoration are given to show that the proposed method outperforms some existing methods in terms of peak signal-to-noise ratio (PSNR), structural similarity (SSIM), visual quality and time consumption.

  12. Hydrogen bonding induced polymorphism in the scandium(III) complex with ε-caprolactam

    Energy Technology Data Exchange (ETDEWEB)

    Virovets, Alexander V.; Peresypkina, Eugenia V. [Institute of Inorganic Chemistry SB RAS, Novosibirsk (Russian Federation); Novosibirsk State Univ. (Russian Federation); Cherkasova, Elizaveta V.; Cherkasova, Tatjana G. [Kuzbass State Technical Univ., Kemerovo (Russian Federation)

    2015-11-01

    Two polymorphs of [Sc(cpl){sub 6}][Cr(NCS){sub 6}] (cpl=ε- C{sub 6}H{sub 11}NO), trigonal and monoclinic, form purple elongated narrow plates and brownish-purple prisms and are formed concomitantly irrespectively of the crystallization conditions. In the trigonal polymorph both cation and anion possess C{sub 3i} site symmetry while in the monoclinic form cation and anion lie on inversion centre and 2-fold axis respectively. The nature of the polymorphism traces back to a redistribution of inter- and intramolecular hydrogen bonds that causes different conformation of the complex cations, different hydrogen bonding and different molecular packings. The [Sc(cpl){sub 6}]{sup 3+} cations in the structure of the trigonal polymorph form intermolecular N(H)..S, and in the monoclinic form both N(H)..S inter- and N(H)..O intramolecular hydrogen bonds with NCS groups of [Cr(NCS){sub 6}]{sup 3-} and cpl ligands. This aggregation leads to chains, where the cations and the anions alternate, in the trigonal modification and to layers, in which each ion is surrounded by four counterions, in the monoclinic form. Both polymorphs possess thermochromic properties, and a reversible color change from light purple to dark green takes place at 470-475 K.

  13. Micro-geographic variation of inversions in natural populations of Drosophila pseudoobscura

    Directory of Open Access Journals (Sweden)

    Salceda Víctor M.

    2006-01-01

    Full Text Available Chromosomal polymorphism for the third chromosome in Drosophila pseudoobscura has been widely studied for genetic variation in different environments or locations far apart. However, there is less information regarding sites geographically near one another. Targeting on possible micro-geographic variation in the species, a serial study was done on 12 Mexican populations grouped in four regions, including locations in Durango (DU, the border area of Guanajuato-San Luis Potosi states (GP, Chiapas (CH and Saldilo (SA. Flies were trapped in their natural habitats using fermenting bananas as bait. They were individually cultivated in the laboratory for larvae production. In a given population sample several flies were cultivated together but only one larva per culture provided salivary tissue to observe polytene chromosomes. Gene arrangements or inversions were identified and frequencies were calculated. A total of 767 third chromosomes were studied and 11 different inversions detected. The type and relative frequencies of the arrangements varied among regions. From the 11 inversions observed, 10 were found in Durango, five in Guanajuato-San Luis Potosi and Chiapas, and eight in Saltillo. The inversion frequencies in the Durango locations varied in four cases, but only one in Chiapas, three cases in Guanajuato-San Luis Potosi, and five in Saltillo. It was also observed that there were geographical gradients for inversions within regions as follows: four arrangements in Saltillo and Durango, three in Guanajuato-San Luis Potosí and one in Chiapas. Moreover, all four regions studied showed evidences for micro-geographical variation. Nevertheless, more studies are needed to elucidate the relevance of the inversion frequencies changes in neighboring populations and also any seasonal-annual frequencies observed in the locations studied here.

  14. 3rd Annual Workshop on Inverse Problem

    CERN Document Server

    2015-01-01

    This proceeding volume is based on papers presented on the Third Annual Workshop on Inverse Problems which was organized by the Department of Mathematical Sciences, Chalmers University of Technology and University of Gothenburg, and took place in May 2013 in Stockholm. The purpose of this workshop was to present new analytical developments and numerical techniques for solution of inverse problems for a wide range of applications in acoustics, electromagnetics, optical fibers, medical imaging, geophysics, etc. The contributions in this volume reflect these themes and will be beneficial to researchers who are working in the area of applied inverse problems.

  15. Inverse Raman effect: applications and detection techniques

    International Nuclear Information System (INIS)

    Hughes, L.J. Jr.

    1980-08-01

    The processes underlying the inverse Raman effect are qualitatively described by comparing it to the more familiar phenomena of conventional and stimulated Raman scattering. An experession is derived for the inverse Raman absorption coefficient, and its relationship to the stimulated Raman gain is obtained. The power requirements of the two fields are examined qualitatively and quantitatively. The assumption that the inverse Raman absorption coefficient is constant over the interaction length is examined. Advantages of the technique are discussed and a brief survey of reported studies is presented

  16. Inverse Raman effect: applications and detection techniques

    Energy Technology Data Exchange (ETDEWEB)

    Hughes, L.J. Jr.

    1980-08-01

    The processes underlying the inverse Raman effect are qualitatively described by comparing it to the more familiar phenomena of conventional and stimulated Raman scattering. An experession is derived for the inverse Raman absorption coefficient, and its relationship to the stimulated Raman gain is obtained. The power requirements of the two fields are examined qualitatively and quantitatively. The assumption that the inverse Raman absorption coefficient is constant over the interaction length is examined. Advantages of the technique are discussed and a brief survey of reported studies is presented.

  17. Multiparameter Optimization for Electromagnetic Inversion Problem

    Directory of Open Access Journals (Sweden)

    M. Elkattan

    2017-10-01

    Full Text Available Electromagnetic (EM methods have been extensively used in geophysical investigations such as mineral and hydrocarbon exploration as well as in geological mapping and structural studies. In this paper, we developed an inversion methodology for Electromagnetic data to determine physical parameters of a set of horizontal layers. We conducted Forward model using transmission line method. In the inversion part, we solved multi parameter optimization problem where, the parameters are conductivity, dielectric constant, and permeability of each layer. The optimization problem was solved by simulated annealing approach. The inversion methodology was tested using a set of models representing common geological formations.

  18. Population inversion in a stationary recombining plasma

    International Nuclear Information System (INIS)

    Otsuka, M.

    1980-01-01

    Population inversion, which occurs in a recombining plasma when a stationary He plasma is brought into contact with a neutral gas, is examined. With hydrogen as a contact gas, noticeable inversion between low-lying levels of H as been found. The overpopulation density is of the order of 10 8 cm -3 , which is much higher then that (approx. =10 5 cm -3 ) obtained previously with He as a contact gas. Relations between these experimental results and the conditions for population inversion are discussed with the CR model

  19. Inverse design methods for radiative transfer systems

    International Nuclear Information System (INIS)

    Daun, K.J.; Howell, J.R.

    2005-01-01

    Radiant enclosures used in industrial processes have traditionally been designed by trial-and-error, a technique that usually demands considerable time to find a solution of limited quality. As an alternative, designers have recently adopted optimization and inverse methodologies to solve design problems involving radiative transfer; the optimization methodology solves the inverse problem implicitly by transforming it into a multivariable minimization problem, while the inverse design methodology solves the problem explicitly using regularization. This paper presents the details of both methodologies, and demonstrates them by solving for the optimal heater settings in an industrially relevant radiant enclosure design problem

  20. The factorization method for inverse problems

    CERN Document Server

    Kirsch, Andreas

    2008-01-01

    The factorization method is a relatively new method for solving certain types of inverse scattering problems and problems in tomography. Aimed at students and researchers in Applied Mathematics, Physics and Engineering, this text introduces the reader to this promising approach for solving important classes of inverse problems. The wide applicability of this method is discussed by choosing typical examples, such as inverse scattering problems for the scalar Helmholtz equation, ascattering problem for Maxwell's equation, and a problem in impedance and optical tomography. The last section of the

  1. Geoacoustic inversion using combustive sound source signals.

    Science.gov (United States)

    Potty, Gopu R; Miller, James H; Wilson, Preston S; Lynch, James F; Newhall, Arthur

    2008-09-01

    Combustive sound source (CSS) data collected on single hydrophone receiving units, in water depths ranging from 65 to 110 m, during the Shallow Water 2006 experiment clearly show modal dispersion effects and are suitable for modal geoacoustic inversions. CSS shots were set off at 26 m depth in 100 m of water. The inversions performed are based on an iterative scheme using dispersion-based short time Fourier transform in which each time-frequency tiling is adaptively rotated in the time-frequency plane, depending on the local wave dispersion. Results of the inversions are found to compare favorably to local core data.

  2. BOOK REVIEW: Inverse Problems. Activities for Undergraduates

    Science.gov (United States)

    Yamamoto, Masahiro

    2003-06-01

    This book is a valuable introduction to inverse problems. In particular, from the educational point of view, the author addresses the questions of what constitutes an inverse problem and how and why we should study them. Such an approach has been eagerly awaited for a long time. Professor Groetsch, of the University of Cincinnati, is a world-renowned specialist in inverse problems, in particular the theory of regularization. Moreover, he has made a remarkable contribution to educational activities in the field of inverse problems, which was the subject of his previous book (Groetsch C W 1993 Inverse Problems in the Mathematical Sciences (Braunschweig: Vieweg)). For this reason, he is one of the most qualified to write an introductory book on inverse problems. Without question, inverse problems are important, necessary and appear in various aspects. So it is crucial to introduce students to exercises in inverse problems. However, there are not many introductory books which are directly accessible by students in the first two undergraduate years. As a consequence, students often encounter diverse concrete inverse problems before becoming aware of their general principles. The main purpose of this book is to present activities to allow first-year undergraduates to learn inverse theory. To my knowledge, this book is a rare attempt to do this and, in my opinion, a great success. The author emphasizes that it is very important to teach inverse theory in the early years. He writes; `If students consider only the direct problem, they are not looking at the problem from all sides .... The habit of always looking at problems from the direct point of view is intellectually limiting ...' (page 21). The book is very carefully organized so that teachers will be able to use it as a textbook. After an introduction in chapter 1, sucessive chapters deal with inverse problems in precalculus, calculus, differential equations and linear algebra. In order to let one gain some insight

  3. Sensitivity analyses of acoustic impedance inversion with full-waveform inversion

    Science.gov (United States)

    Yao, Gang; da Silva, Nuno V.; Wu, Di

    2018-04-01

    Acoustic impedance estimation has a significant importance to seismic exploration. In this paper, we use full-waveform inversion to recover the impedance from seismic data, and analyze the sensitivity of the acoustic impedance with respect to the source-receiver offset of seismic data and to the initial velocity model. We parameterize the acoustic wave equation with velocity and impedance, and demonstrate three key aspects of acoustic impedance inversion. First, short-offset data are most suitable for acoustic impedance inversion. Second, acoustic impedance inversion is more compatible with the data generated by density contrasts than velocity contrasts. Finally, acoustic impedance inversion requires the starting velocity model to be very accurate for achieving a high-quality inversion. Based upon these observations, we propose a workflow for acoustic impedance inversion as: (1) building a background velocity model with travel-time tomography or reflection waveform inversion; (2) recovering the intermediate wavelength components of the velocity model with full-waveform inversion constrained by Gardner’s relation; (3) inverting the high-resolution acoustic impedance model with short-offset data through full-waveform inversion. We verify this workflow by the synthetic tests based on the Marmousi model.

  4. Full traveltime inversion in source domain

    KAUST Repository

    Liu, Lu

    2017-06-01

    This paper presents a new method of source-domain full traveltime inversion (FTI). The objective of this study is automatically building near-surface velocity using the early arrivals of seismic data. This method can generate the inverted velocity that can kinetically best match the reconstructed plane-wave source of early arrivals with true source in source domain. It does not require picking first arrivals for tomography, which is one of the most challenging aspects of ray-based tomographic inversion. Besides, this method does not need estimate the source wavelet, which is a necessity for receiver-domain wave-equation velocity inversion. Furthermore, we applied our method on one synthetic dataset; the results show our method could generate a reasonable background velocity even when shingling first arrivals exist and could provide a good initial velocity for the conventional full waveform inversion (FWI).

  5. n-Colour self-inverse compositions

    Indian Academy of Sciences (India)

    colour self-inverse composition. This introduces four new sequences which satisfy the same recurrence relation with different initial conditions like the famous Fibonacci and Lucas sequences. For these new sequences explicit formulas, recurrence ...

  6. Inverse Doppler Effects in Broadband Acoustic Metamaterials.

    Science.gov (United States)

    Zhai, S L; Zhao, X P; Liu, S; Shen, F L; Li, L L; Luo, C R

    2016-08-31

    The Doppler effect refers to the change in frequency of a wave source as a consequence of the relative motion between the source and an observer. Veselago theoretically predicted that materials with negative refractions can induce inverse Doppler effects. With the development of metamaterials, inverse Doppler effects have been extensively investigated. However, the ideal material parameters prescribed by these metamaterial design approaches are complex and also challenging to obtain experimentally. Here, we demonstrated a method of designing and experimentally characterising arbitrary broadband acoustic metamaterials. These omni-directional, double-negative, acoustic metamaterials are constructed with 'flute-like' acoustic meta-cluster sets with seven double meta-molecules; these metamaterials also overcome the limitations of broadband negative bulk modulus and mass density to provide a region of negative refraction and inverse Doppler effects. It was also shown that inverse Doppler effects can be detected in a flute, which has been popular for thousands of years in Asia and Europe.

  7. n-Colour self-inverse compositions

    Indian Academy of Sciences (India)

    inverse composition. This introduces four new sequences which satisfy the same recurrence relation with different initial conditions like the famous Fibonacci and Lucas sequences. For these new sequences explicit formulas, recurrence relations ...

  8. Parametric optimization of inverse trapezoid oleophobic surfaces

    DEFF Research Database (Denmark)

    Cavalli, Andrea; Bøggild, Peter; Okkels, Fridolin

    2012-01-01

    In this paper, we introduce a comprehensive and versatile approach to the parametric shape optimization of oleophobic surfaces. We evaluate the performance of inverse trapezoid microstructures in terms of three objective parameters: apparent contact angle, maximum sustainable hydrostatic pressure...

  9. An inverse method for radiation transport

    Energy Technology Data Exchange (ETDEWEB)

    Favorite, J. A. (Jeffrey A.); Sanchez, R. (Richard)

    2004-01-01

    Adjoint functions have been used with forward functions to compute gradients in implicit (iterative) solution methods for inverse problems in optical tomography, geoscience, thermal science, and other fields, but only once has this approach been used for inverse solutions to the Boltzmann transport equation. In this paper, this approach is used to develop an inverse method that requires only angle-independent flux measurements, rather than angle-dependent measurements as was done previously. The method is applied to a simplified form of the transport equation that does not include scattering. The resulting procedure uses measured values of gamma-ray fluxes of discrete, characteristic energies to determine interface locations in a multilayer shield. The method was implemented with a Newton-Raphson optimization algorithm, and it worked very well in numerical one-dimensional spherical test cases. A more sophisticated optimization method would better exploit the potential of the inverse method.

  10. The inverse square law of gravitation

    International Nuclear Information System (INIS)

    Cook, A.H.

    1987-01-01

    The inverse square law of gravitation is very well established over the distances of celestial mechanics, while in electrostatics the law has been shown to be followed to very high precision. However, it is only within the last century that any laboratory experiments have been made to test the inverse square law for gravitation, and all but one has been carried out in the last ten years. At the same time, there has been considerable interest in the possibility of deviations from the inverse square law, either because of a possible bearing on unified theories of forces, including gravitation or, most recently, because of a possible additional fifth force of nature. In this article the various lines of evidence for the inverse square law are summarized, with emphasis upon the recent laboratory experiments. (author)

  11. Bayesian inversion of refraction seismic traveltime data

    Science.gov (United States)

    Ryberg, T.; Haberland, Ch

    2018-03-01

    We apply a Bayesian Markov chain Monte Carlo (McMC) formalism to the inversion of refraction seismic, traveltime data sets to derive 2-D velocity models below linear arrays (i.e. profiles) of sources and seismic receivers. Typical refraction data sets, especially when using the far-offset observations, are known as having experimental geometries which are very poor, highly ill-posed and far from being ideal. As a consequence, the structural resolution quickly degrades with depth. Conventional inversion techniques, based on regularization, potentially suffer from the choice of appropriate inversion parameters (i.e. number and distribution of cells, starting velocity models, damping and smoothing constraints, data noise level, etc.) and only local model space exploration. McMC techniques are used for exhaustive sampling of the model space without the need of prior knowledge (or assumptions) of inversion parameters, resulting in a large number of models fitting the observations. Statistical analysis of these models allows to derive an average (reference) solution and its standard deviation, thus providing uncertainty estimates of the inversion result. The highly non-linear character of the inversion problem, mainly caused by the experiment geometry, does not allow to derive a reference solution and error map by a simply averaging procedure. We present a modified averaging technique, which excludes parts of the prior distribution in the posterior values due to poor ray coverage, thus providing reliable estimates of inversion model properties even in those parts of the models. The model is discretized by a set of Voronoi polygons (with constant slowness cells) or a triangulated mesh (with interpolation within the triangles). Forward traveltime calculations are performed by a fast, finite-difference-based eikonal solver. The method is applied to a data set from a refraction seismic survey from Northern Namibia and compared to conventional tomography. An inversion test

  12. An Inversion Recovery NMR Kinetics Experiment

    OpenAIRE

    Williams, Travis J.; Kershaw, Allan D.; Li, Vincent; Wu, Xinping

    2011-01-01

    A convenient laboratory experiment is described in which NMR magnetization transfer by inversion recovery is used to measure the kinetics and thermochemistry of amide bond rotation. The experiment utilizes Varian spectrometers with the VNMRJ 2.3 software, but can be easily adapted to any NMR platform. The procedures and sample data sets in this article will enable instructors to use inversion recovery as a laboratory activity in applied NMR classes and provide research students with a conveni...

  13. Population inversion in recombining hydrogen plasma

    International Nuclear Information System (INIS)

    Furukane, Utaro; Yokota, Toshiaki; Oda, Toshiatsu.

    1978-11-01

    The collisional-radiative model is applied to a recombining hydrogen plasma in order to investigate the plasma condition in which the population inversion between the energy levels of hydrogen can be generated. The population inversion is expected in a plasma where the three body recombination has a large contribution to the recombining processes and the effective recombination rate is beyond a certain value for a given electron density and temperature. Calculated results are presented in figures and tables. (author)

  14. Approximation of Bayesian Inverse Problems for PDEs

    OpenAIRE

    Cotter, S. L.; Dashti, M.; Stuart, A. M.

    2010-01-01

    Inverse problems are often ill posed, with solutions that depend sensitively on data.n any numerical approach to the solution of such problems, regularization of some form is needed to counteract the resulting instability. This paper is based on an approach to regularization, employing a Bayesian formulation of the problem, which leads to a notion of well posedness for inverse problems, at the level of probability measures. The stability which results from this well posedness may be used as t...

  15. On the Inversion of the Lidar Equation

    Science.gov (United States)

    1984-11-01

    sectitns briefly review the major inversion methods to date and a fourth section describes the development of the modified inversion method. All four...can be seeu when It is understood ’in terms of its ,physical significance. Equation 17 states that the normalized integrated backscatter has a limit. In...still give significant errors. 4.0 VALIDATION OF AGILE In this chapter, evidence of the success of AGILE will be reviewed and compared with Klett’s

  16. Inverse regression for ridge recovery II: Numerics

    OpenAIRE

    Glaws, Andrew; Constantine, Paul G.; Cook, R. Dennis

    2018-01-01

    We investigate the application of sufficient dimension reduction (SDR) to a noiseless data set derived from a deterministic function of several variables. In this context, SDR provides a framework for ridge recovery. In this second part, we explore the numerical subtleties associated with using two inverse regression methods---sliced inverse regression (SIR) and sliced average variance estimation (SAVE)---for ridge recovery. This includes a detailed numerical analysis of the eigenvalues of th...

  17. Fast nonlinear susceptibility inversion with variational regularization.

    Science.gov (United States)

    Milovic, Carlos; Bilgic, Berkin; Zhao, Bo; Acosta-Cabronero, Julio; Tejos, Cristian

    2018-01-10

    Quantitative susceptibility mapping can be performed through the minimization of a function consisting of data fidelity and regularization terms. For data consistency, a Gaussian-phase noise distribution is often assumed, which breaks down when the signal-to-noise ratio is low. A previously proposed alternative is to use a nonlinear data fidelity term, which reduces streaking artifacts, mitigates noise amplification, and results in more accurate susceptibility estimates. We hereby present a novel algorithm that solves the nonlinear functional while achieving computation speeds comparable to those for a linear formulation. We developed a nonlinear quantitative susceptibility mapping algorithm (fast nonlinear susceptibility inversion) based on the variable splitting and alternating direction method of multipliers, in which the problem is split into simpler subproblems with closed-form solutions and a decoupled nonlinear inversion hereby solved with a Newton-Raphson iterative procedure. Fast nonlinear susceptibility inversion performance was assessed using numerical phantom and in vivo experiments, and was compared against the nonlinear morphology-enabled dipole inversion method. Fast nonlinear susceptibility inversion achieves similar accuracy to nonlinear morphology-enabled dipole inversion but with significantly improved computational efficiency. The proposed method enables accurate reconstructions in a fraction of the time required by state-of-the-art quantitative susceptibility mapping methods. Magn Reson Med, 2018. © 2018 International Society for Magnetic Resonance in Medicine. © 2018 International Society for Magnetic Resonance in Medicine.

  18. Atmospheric inverse modeling via sparse reconstruction

    Directory of Open Access Journals (Sweden)

    N. Hase

    2017-10-01

    Full Text Available Many applications in atmospheric science involve ill-posed inverse problems. A crucial component of many inverse problems is the proper formulation of a priori knowledge about the unknown parameters. In most cases, this knowledge is expressed as a Gaussian prior. This formulation often performs well at capturing smoothed, large-scale processes but is often ill equipped to capture localized structures like large point sources or localized hot spots. Over the last decade, scientists from a diverse array of applied mathematics and engineering fields have developed sparse reconstruction techniques to identify localized structures. In this study, we present a new regularization approach for ill-posed inverse problems in atmospheric science. It is based on Tikhonov regularization with sparsity constraint and allows bounds on the parameters. We enforce sparsity using a dictionary representation system. We analyze its performance in an atmospheric inverse modeling scenario by estimating anthropogenic US methane (CH4 emissions from simulated atmospheric measurements. Different measures indicate that our sparse reconstruction approach is better able to capture large point sources or localized hot spots than other methods commonly used in atmospheric inversions. It captures the overall signal equally well but adds details on the grid scale. This feature can be of value for any inverse problem with point or spatially discrete sources. We show an example for source estimation of synthetic methane emissions from the Barnett shale formation.

  19. Atmospheric inverse modeling via sparse reconstruction

    Science.gov (United States)

    Hase, Nils; Miller, Scot M.; Maaß, Peter; Notholt, Justus; Palm, Mathias; Warneke, Thorsten

    2017-10-01

    Many applications in atmospheric science involve ill-posed inverse problems. A crucial component of many inverse problems is the proper formulation of a priori knowledge about the unknown parameters. In most cases, this knowledge is expressed as a Gaussian prior. This formulation often performs well at capturing smoothed, large-scale processes but is often ill equipped to capture localized structures like large point sources or localized hot spots. Over the last decade, scientists from a diverse array of applied mathematics and engineering fields have developed sparse reconstruction techniques to identify localized structures. In this study, we present a new regularization approach for ill-posed inverse problems in atmospheric science. It is based on Tikhonov regularization with sparsity constraint and allows bounds on the parameters. We enforce sparsity using a dictionary representation system. We analyze its performance in an atmospheric inverse modeling scenario by estimating anthropogenic US methane (CH4) emissions from simulated atmospheric measurements. Different measures indicate that our sparse reconstruction approach is better able to capture large point sources or localized hot spots than other methods commonly used in atmospheric inversions. It captures the overall signal equally well but adds details on the grid scale. This feature can be of value for any inverse problem with point or spatially discrete sources. We show an example for source estimation of synthetic methane emissions from the Barnett shale formation.

  20. Habitual coffee intake, genetic polymorphisms, and type 2 diabetes.

    Science.gov (United States)

    Lee, Jae Kyung; Kim, Kyunga; Ahn, Younjhin; Yang, Mihi; Lee, Jung Eun

    2015-05-01

    The association between coffee intake and type 2 diabetes may be modulated by common genetic variation. The purpose of this study was to examine the association between habitual coffee intake and the risk of type 2 diabetes and to determine whether this association varied by genetic polymorphisms related to type 2 diabetes in Korean adults. A population-based cohort study over a follow-up of 4 years was conducted. A total of 4077 Korean men and women aged 40-69 years with a normal glucose level at baseline were included. Coffee intake was assessed using a validated food frequency questionnaire, and incident type 2 diabetes or prediabetes was defined by oral glucose tolerance test or fasting blood glucose test. The genomic DNA samples were genotyped with the Affymetrix Genome-Wide Human SNP Array 5.0, and nine single-nucleotide polymorphisms related to type 2 diabetes in East Asian populations were extracted. A total of 120 cases of type 2 diabetes and 1128 cases of prediabetes were identified. After adjustment for potential confounding factors, we observed an inverse association, but without any clear linear trend, between coffee intake and the combined risk of type 2 diabetes and prediabetes. We found that inverse associations between habitual coffee intake and the combined risk of type 2 diabetes and prediabetes were limited to those with the T-allele (GT/TT) of rs4402960 in IGF2BP2, those with the G-allele (GG/GC) of rs7754840 in CDKAL1, or those with CC of rs5215 in KCNJ11. We found a lower risk of prediabetes and type 2 diabetes combined with coffee intake among individuals with the GT/TT of IGF2BP2 rs4402960, GG/GC of CDKAL1 rs7754840, or CC of KCNJ11 rs5215, which are known to be related to type 2 diabetes in East Asians. © 2015 European Society of Endocrinology.

  1. An application of sparse inversion on the calculation of the inverse data space of geophysical data

    KAUST Repository

    Saragiotis, Christos

    2011-07-01

    Multiple reflections as observed in seismic reflection measurements often hide arrivals from the deeper target reflectors and need to be removed. The inverse data space provides a natural separation of primaries and surface-related multiples, as the surface multiples map onto the area around the origin while the primaries map elsewhere. However, the calculation of the inverse data is far from trivial as theory requires infinite time and offset recording. Furthermore regularization issues arise during inversion. We perform the inversion by minimizing the least-squares norm of the misfit function and by constraining the 1 norm of the solution, being the inverse data space. In this way a sparse inversion approach is obtained. We show results on field data with an application to surface multiple removal. © 2011 IEEE.

  2. Chromatid Painting for Chromosomal Inversion Detection, Phase I

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose a novel approach to the detection of chromosomal inversions. Transmissible chromosome aberrations (translocations and inversions) have profound genetic...

  3. Association of sterol regulatory element-binding transcription factor gene polymorphisms with ischaemic stroke.

    Science.gov (United States)

    Jin, X; Zeng, F; Zhang, N; Huang, T; Meng, Q; Liu, Y

    2012-01-01

    To explore the association between polymorphisms of the sterol regulatory element-binding transcription factor (SREBF) gene and ischaemic stroke. The SREBF1c 54G>C and SREBPF2 1784G>C genotypes were assessed using restriction fragment length polymorphism analysis in 446 Han Chinese ischaemic stroke patients and 355 Han Chinese control subjects without cerebrovascular disease. The frequencies of the SREBF2 1784G>C CC genotype and the C allele were significantly higher in the ischaemic stroke group than in controls. Patients with ischaemic stroke who had the SREBF2 1784G>C CC genotype had significantly lower high-density lipoprotein (HDL) levels, compared with ischaemic stroke patients and control subjects with the GC or GG genotypes. Multivariate logistic regression analysis revealed a significant positive association between SREBF2 1784G>C and ischaemic stroke; an inverse association was observed between HDL level and risk of ischaemic stroke. The CC genotype of the SREBF2 1784G>C polymorphism was associated with an increased risk of ischaemic stroke, possibly through decreasing the HDL level, which was inversely associated with the risk of ischaemic stroke.

  4. QCD-instantons and conformal inversion symmetry

    International Nuclear Information System (INIS)

    Klammer, D.

    2006-07-01

    Instantons are an essential and non-perturbative part of Quantum Chromodynamics, the theory of strong interactions. One of the most relevant quantities in the instanton calculus is the instanton-size distribution, which can be described on the one hand within the framework of instanton perturbation theory and on the other hand investigated numerically by means of lattice computations. A rapid onset of a drastic discrepancy between these respective results indicates that the underlying physics is not yet well understood. In this work we investigate the appealing possibility of a symmetry under conformal inversion of space-time leading to this deviation. The motivation being that the lattice data seem to be invariant under an inversion of the instanton size. Since the instanton solution of a given size turns into an anti-instanton solution having an inverted size under conformal inversion of space-time, we ask in a first investigation, whether this property is transferred to the quantum level. In order to introduce a new scale, which is indicated by the lattice data and corresponds to the average instanton size as inversion radius, we project the instanton calculus onto the four-dimensional surface of a five-dimensional sphere via stereographic projection. The radius of this sphere is associated with the average instanton size. The result for the instanton size-distribution projected onto the sphere agrees surprisingly well with the lattice data at qualitative level. The resulting symmetry under an inversion of the instanton size is almost perfect. (orig.)

  5. QCD-instantons and conformal inversion symmetry

    Energy Technology Data Exchange (ETDEWEB)

    Klammer, D.

    2006-07-15

    Instantons are an essential and non-perturbative part of Quantum Chromodynamics, the theory of strong interactions. One of the most relevant quantities in the instanton calculus is the instanton-size distribution, which can be described on the one hand within the framework of instanton perturbation theory and on the other hand investigated numerically by means of lattice computations. A rapid onset of a drastic discrepancy between these respective results indicates that the underlying physics is not yet well understood. In this work we investigate the appealing possibility of a symmetry under conformal inversion of space-time leading to this deviation. The motivation being that the lattice data seem to be invariant under an inversion of the instanton size. Since the instanton solution of a given size turns into an anti-instanton solution having an inverted size under conformal inversion of space-time, we ask in a first investigation, whether this property is transferred to the quantum level. In order to introduce a new scale, which is indicated by the lattice data and corresponds to the average instanton size as inversion radius, we project the instanton calculus onto the four-dimensional surface of a five-dimensional sphere via stereographic projection. The radius of this sphere is associated with the average instanton size. The result for the instanton size-distribution projected onto the sphere agrees surprisingly well with the lattice data at qualitative level. The resulting symmetry under an inversion of the instanton size is almost perfect. (orig.)

  6. Unwrapped phase inversion with an exponential damping

    KAUST Repository

    Choi, Yun Seok

    2015-07-28

    Full-waveform inversion (FWI) suffers from the phase wrapping (cycle skipping) problem when the frequency of data is not low enough. Unless we obtain a good initial velocity model, the phase wrapping problem in FWI causes a result corresponding to a local minimum, usually far away from the true solution, especially at depth. Thus, we have developed an inversion algorithm based on a space-domain unwrapped phase, and we also used exponential damping to mitigate the nonlinearity associated with the reflections. We construct the 2D phase residual map, which usually contains the wrapping discontinuities, especially if the model is complex and the frequency is high. We then unwrap the phase map and remove these cycle-based jumps. However, if the phase map has several residues, the unwrapping process becomes very complicated. We apply a strong exponential damping to the wavefield to eliminate much of the residues in the phase map, thus making the unwrapping process simple. We finally invert the unwrapped phases using the back-propagation algorithm to calculate the gradient. We progressively reduce the damping factor to obtain a high-resolution image. Numerical examples determined that the unwrapped phase inversion with a strong exponential damping generated convergent long-wavelength updates without low-frequency information. This model can be used as a good starting model for a subsequent inversion with a reduced damping, eventually leading to conventional waveform inversion.

  7. RUMBLE Technical Report on Inversion Models

    Science.gov (United States)

    Simons, Dick G.; Ainslie, Michael A.; Muller, Simonette H. E.; Boek, Wilco

    2002-06-01

    The performance of long range low frequency active sonar (LFAS) systems in shallow water is very sensitive to the properties of the sea bed, because of the impact of these on propagation, reverberation and (to a lesser extent) ambient noise. Direct measurement of sea bed parameters using cores or grab samples is impractical for covering a wide area, and instead we consider the possibility of using the LFAS system itself to measure its operating environment. The advantages of this approach are that it exploits existing (or planned) equipment and potentially offers a wide coverage. Geo-acoustic inversion methods are reviewed, with particular consideration for the problems associated with inversion of reverberation data. Three global optimisation methods are described, known as "simulated annealing", "genetic algorithms" and "differential evolution". The Levenberg-Marquardt and downhill simplex local methods are also described. The advantages and disadvantages of each individual method, as well as some hybrid combinations, are discussed in the context of geo-acoustic inversion. A new inversion method has been developed that exploits both the shape and height of the reverberation vs time curve to obtain information about the sea bed reflection loss and scattering strength separately. Tests on synthetic reverberation data show that the inversion method is able to extract parameters representing reflection loss and scattering strength, but cannot always unambiguously separate the effects of sediment sound speed and attenuation. The method is robust to small mismatches in water depth, sonar depth, sediment sound speed gradient and wind speed.

  8. Full wave-field reflection coefficient inversion.

    Science.gov (United States)

    Dettmer, Jan; Dosso, Stan E; Holland, Charles W

    2007-12-01

    This paper develops a Bayesian inversion for recovering multilayer geoacoustic (velocity, density, attenuation) profiles from a full wave-field (spherical-wave) seabed reflection response. The reflection data originate from acoustic time series windowed for a single bottom interaction, which are processed to yield reflection coefficient data as a function of frequency and angle. Replica data for inversion are computed using a wave number-integration model to calculate the full complex acoustic pressure field, which is processed to produce a commensurate seabed response function. To address the high computational cost of calculating short range acoustic fields, the inversion algorithms are parallelized and frequency averaging is replaced by range averaging in the forward model. The posterior probability density is interpreted in terms of optimal parameter estimates, marginal distributions, and credibility intervals. Inversion results for the full wave-field seabed response are compared to those obtained using plane-wave reflection coefficients. A realistic synthetic study indicates that the plane-wave assumption can fail, producing erroneous results with misleading uncertainty bounds, whereas excellent results are obtained with the full-wave reflection inversion.

  9. Multiscattering inversion for low-model wavenumbers

    KAUST Repository

    Alkhalifah, Tariq Ali

    2016-09-21

    A successful full-waveform inversion implementation updates the low-wavenumber model components first for a proper description of the wavefield propagation and slowly adds the high wavenumber potentially scattering parts of the model. The low-wavenumber components can be extracted from the transmission parts of the recorded wavefield emanating directly from the source or the transmission parts from the single- or double-scattered wavefield computed from a predicted scatter field acting as secondary sources.We use a combined inversion of data modeled from the source and those corresponding to single and double scattering to update the velocity model and the component of the velocity (perturbation) responsible for the single and double scattering. The combined inversion helps us access most of the potential model wavenumber information that may be embedded in the data. A scattering-angle filter is used to divide the gradient of the combined inversion, so initially the high-wavenumber (low-scattering-angle) components of the gradient are directed to the perturbation model and the low-wavenumber (highscattering- angle) components are directed to the velocity model. As our background velocity matures, the scatteringangle divide is slowly lowered to allow for more of the higher wavenumbers to contribute the velocity model. Synthetic examples including the Marmousi model are used to demonstrate the additional illumination and improved velocity inversion obtained when including multiscattered energy. © 2016 Society of Exploration Geophysicists.

  10. Alternating minimisation for glottal inverse filtering

    Science.gov (United States)

    Rodrigo Bleyer, Ismael; Lybeck, Lasse; Auvinen, Harri; Airaksinen, Manu; Alku, Paavo; Siltanen, Samuli

    2017-06-01

    A new method is proposed for solving the glottal inverse filtering (GIF) problem. The goal of GIF is to separate an acoustical speech signal into two parts: the glottal airflow excitation and the vocal tract filter. To recover such information one has to deal with a blind deconvolution problem. This ill-posed inverse problem is solved under a deterministic setting, considering unknowns on both sides of the underlying operator equation. A stable reconstruction is obtained using a double regularization strategy, alternating between fixing either the glottal source signal or the vocal tract filter. This enables not only splitting the nonlinear and nonconvex problem into two linear and convex problems, but also allows the use of the best parameters and constraints to recover each variable at a time. This new technique, called alternating minimization glottal inverse filtering (AM-GIF), is compared with two other approaches: Markov chain Monte Carlo glottal inverse filtering (MCMC-GIF), and iterative adaptive inverse filtering (IAIF), using synthetic speech signals. The recent MCMC-GIF has good reconstruction quality but high computational cost. The state-of-the-art IAIF method is computationally fast but its accuracy deteriorates, particularly for speech signals of high fundamental frequency (F0). The results show the competitive performance of the new method: With high F0, the reconstruction quality is better than that of IAIF and close to MCMC-GIF while reducing the computational complexity by two orders of magnitude.

  11. Speaker independent acoustic-to-articulatory inversion

    Science.gov (United States)

    Ji, An

    Acoustic-to-articulatory inversion, the determination of articulatory parameters from acoustic signals, is a difficult but important problem for many speech processing applications, such as automatic speech recognition (ASR) and computer aided pronunciation training (CAPT). In recent years, several approaches have been successfully implemented for speaker dependent models with parallel acoustic and kinematic training data. However, in many practical applications inversion is needed for new speakers for whom no articulatory data is available. In order to address this problem, this dissertation introduces a novel speaker adaptation approach called Parallel Reference Speaker Weighting (PRSW), based on parallel acoustic and articulatory Hidden Markov Models (HMM). This approach uses a robust normalized articulatory space and palate referenced articulatory features combined with speaker-weighted adaptation to form an inversion mapping for new speakers that can accurately estimate articulatory trajectories. The proposed PRSW method is evaluated on the newly collected Marquette electromagnetic articulography -- Mandarin Accented English (EMA-MAE) corpus using 20 native English speakers. Cross-speaker inversion results show that given a good selection of reference speakers with consistent acoustic and articulatory patterns, the PRSW approach gives good speaker independent inversion performance even without kinematic training data.

  12. Genes located in a chromosomal inversion are correlated with territorial song in white-throated sparrows.

    Science.gov (United States)

    Zinzow-Kramer, W M; Horton, B M; McKee, C D; Michaud, J M; Tharp, G K; Thomas, J W; Tuttle, E M; Yi, S; Maney, D L

    2015-11-01

    The genome of the white-throated sparrow (Zonotrichia albicollis) contains an inversion polymorphism on chromosome 2 that is linked to predictable variation in a suite of phenotypic traits including plumage color, aggression and parental behavior. Differences in gene expression between the two color morphs, which represent the two common inversion genotypes (ZAL2/ZAL2 and ZAL2/ZAL2(m) ), may therefore advance our understanding of the molecular underpinnings of these phenotypes. To identify genes that are differentially expressed between the two morphs and correlated with behavior, we quantified gene expression and terrirorial aggression, including song, in a population of free-living white-throated sparrows. We analyzed gene expression in two brain regions, the medial amygdala (MeA) and hypothalamus. Both regions are part of a 'social behavior network', which is rich in steroid hormone receptors and previously linked with territorial behavior. Using weighted gene co-expression network analyses, we identified modules of genes that were correlated with both morph and singing behavior. The majority of these genes were located within the inversion, showing the profound effect of the inversion on the expression of genes captured by the rearrangement. These modules were enriched with genes related to retinoic acid signaling and basic cellular functioning. In the MeA, the most prominent pathways were those related to steroid hormone receptor activity. Within these pathways, the only gene encoding such a receptor was ESR1 (estrogen receptor 1), a gene previously shown to predict song rate in this species. The set of candidate genes we identified may mediate the effects of a chromosomal inversion on territorial behavior. © 2015 John Wiley & Sons Ltd and International Behavioural and Neural Genetics Society.

  13. Genetic Polymorphisms, Estrogens, and Breast Density

    National Research Council Canada - National Science Library

    Maskarinec, Gertraud

    2003-01-01

    .... We have completed two investigations that addressed the following specific aims: 1. To examine the association between polymorphism in genes coding for metabolism and biosynthesis of estrogens...

  14. Interplay of Nitrogen-Atom Inversion and Conformational Inversion in Enantiomerization of 1H-1-Benzazepines.

    Science.gov (United States)

    Ramig, Keith; Subramaniam, Gopal; Karimi, Sasan; Szalda, David J; Ko, Allen; Lam, Aaron; Li, Jeffrey; Coaderaj, Ani; Cavdar, Leyla; Bogdan, Lukasz; Kwon, Kitae; Greer, Edyta M

    2016-04-15

    A series of 2,4-disubstituted 1H-1-benzazepines, 2a-d, 4, and 6, were studied, varying both the substituents at C2 and C4 and at the nitrogen atom. The conformational inversion (ring-flip) and nitrogen-atom inversion (N-inversion) energetics were studied by variable-temperature NMR spectroscopy and computations. The steric bulk of the nitrogen-atom substituent was found to affect both the conformation of the azepine ring and the geometry around the nitrogen atom. Also affected were the Gibbs free energy barriers for the ring-flip and the N-inversion. When the nitrogen-atom substituent was alkyl, as in 2a-c, the geometry of the nitrogen atom was nearly planar and the azepine ring was highly puckered; the result was a relatively high-energy barrier to ring-flip and a low barrier to N-inversion. Conversely, when the nitrogen-atom substituent was a hydrogen atom, as in 2d, 4, and 6, the nitrogen atom was significantly pyramidalized and the azepine ring was less puckered; the result here was a relatively high energy barrier to N-inversion and a low barrier to ring-flip. In these N-unsubstituted compounds, it was found computationally that the lowest-energy stereodynamic process was ring-flip coupled with N-inversion, as N-inversion alone had a much higher energy barrier.

  15. PCR-based karyotyping of Anopheles gambiae inversion 2Rj identifies the BAMAKO chromosomal form.

    Science.gov (United States)

    Coulibaly, Mamadou B; Pombi, Marco; Caputo, Beniamino; Nwakanma, Davis; Jawara, Musa; Konate, Lassana; Dia, Ibrahima; Fofana, Abdrahamane; Kern, Marcia; Simard, Frédéric; Conway, David J; Petrarca, Vincenzo; della Torre, Alessandra; Traoré, Sékou; Besansky, Nora J

    2007-10-01

    The malaria vector Anopheles gambiae is polymorphic for chromosomal inversions on the right arm of chromosome 2 that segregate nonrandomly between assortatively mating populations in West Africa. One such inversion, 2Rj, is associated with the BAMAKO chromosomal form endemic to southern Mali and northern Guinea Conakry near the Niger River. Although it exploits a unique ecology and both molecular and chromosomal data suggest reduced gene flow between BAMAKO and other A. gambiae populations, no molecular markers exist to identify this form. To facilitate study of the BAMAKO form, a PCR assay for molecular karyotyping of 2Rj was developed based on sequences at the breakpoint junctions. The assay was extensively validated using more than 700 field specimens whose karyotypes were determined in parallel by cytogenetic and molecular methods. As inversion 2Rj also occurs in SAVANNA populations outside the geographic range of BAMAKO, samples were tested from Senegal, Cameroon and western Guinea Conakry as well as from Mali. In southern Mali, where 2Rj polymorphism in SAVANNA populations was very low and most of the 2Rj homozygotes were found in BAMAKO karyotypes, the molecular and cytogenetic methods were almost perfectly congruent. Elsewhere agreement between the methods was much poorer, as the molecular assay frequently misclassified 2Rj heterozygotes as 2R+j standard homozygotes. Molecular karyotyping of 2Rj is robust and accurate on 2R+j standard and 2Rj inverted homozygotes. Therefore, the proposed approach overcomes the lack of a rapid tool for identifying the BAMAKO form across developmental stages and sexes, and opens new perspectives for the study of BAMAKO ecology and behaviour. On the other hand, the method should not be applied for molecular karyotyping of j-carriers within the SAVANNA chromosomal form.

  16. PCR-based karyotyping of Anopheles gambiae inversion 2Rj identifies the BAMAKO chromosomal form

    Directory of Open Access Journals (Sweden)

    Conway David J

    2007-10-01

    Full Text Available Abstract Background The malaria vector Anopheles gambiae is polymorphic for chromosomal inversions on the right arm of chromosome 2 that segregate nonrandomly between assortatively mating populations in West Africa. One such inversion, 2Rj, is associated with the BAMAKO chromosomal form endemic to southern Mali and northern Guinea Conakry near the Niger River. Although it exploits a unique ecology and both molecular and chromosomal data suggest reduced gene flow between BAMAKO and other A. gambiae populations, no molecular markers exist to identify this form. Methods To facilitate study of the BAMAKO form, a PCR assay for molecular karyotyping of 2Rj was developed based on sequences at the breakpoint junctions. The assay was extensively validated using more than 700 field specimens whose karyotypes were determined in parallel by cytogenetic and molecular methods. As inversion 2Rj also occurs in SAVANNA populations outside the geographic range of BAMAKO, samples were tested from Senegal, Cameroon and western Guinea Conakry as well as from Mali. Results In southern Mali, where 2Rj polymorphism in SAVANNA populations was very low and most of the 2Rj homozygotes were found in BAMAKO karyotypes, the molecular and cytogenetic methods were almost perfectly congruent. Elsewhere agreement between the methods was much poorer, as the molecular assay frequently misclassified 2Rj heterozygotes as 2R+j standard homozygotes. Conclusion Molecular karyotyping of 2Rj is robust and accurate on 2R+j standard and 2Rj inverted homozygotes. Therefore, the proposed approach overcomes the lack of a rapid tool for identifying the BAMAKO form across developmental stages and sexes, and opens new perspectives for the study of BAMAKO ecology and behaviour. On the other hand, the method should not be applied for molecular karyotyping of j-carriers within the SAVANNA chromosomal form.

  17. Oil core microcapsules by inverse gelation technique.

    Science.gov (United States)

    Martins, Evandro; Renard, Denis; Davy, Joëlle; Marquis, Mélanie; Poncelet, Denis

    2015-01-01

    A promising technique for oil encapsulation in Ca-alginate capsules by inverse gelation was proposed by Abang et al. This method consists of emulsifying calcium chloride solution in oil and then adding it dropwise in an alginate solution to produce Ca-alginate capsules. Spherical capsules with diameters around 3 mm were produced by this technique, however the production of smaller capsules was not demonstrated. The objective of this study is to propose a new method of oil encapsulation in a Ca-alginate membrane by inverse gelation. The optimisation of the method leads to microcapsules with diameters around 500 μm. In a search of microcapsules with improved diffusion characteristics, the size reduction is an essential factor to broaden the applications in food, cosmetics and pharmaceuticals areas. This work contributes to a better understanding of the inverse gelation technique and allows the production of microcapsules with a well-defined shell-core structure.

  18. Fuzzy logic guided inverse treatment planning

    International Nuclear Information System (INIS)

    Yan Hui; Yin Fangfang; Guan Huaiqun; Kim, Jae Ho

    2003-01-01

    A fuzzy logic technique was applied to optimize the weighting factors in the objective function of an inverse treatment planning system for intensity-modulated radiation therapy (IMRT). Based on this technique, the optimization of weighting factors is guided by the fuzzy rules while the intensity spectrum is optimized by a fast-monotonic-descent method. The resultant fuzzy logic guided inverse planning system is capable of finding the optimal combination of weighting factors for different anatomical structures involved in treatment planning. This system was tested using one simulated (but clinically relevant) case and one clinical case. The results indicate that the optimal balance between the target dose and the critical organ dose is achieved by a refined combination of weighting factors. With the help of fuzzy inference, the efficiency and effectiveness of inverse planning for IMRT are substantially improved

  19. Surface Vibration Reconstruction using Inverse Numerical Acoustics

    Directory of Open Access Journals (Sweden)

    F. Martinus

    2003-05-01

    Full Text Available This paper explores the use of inverse numerical acoustics to reconstruct the surface vibration of a noise source. Inverse numerical acoustics is mainly used for source identification. This approach uses the measured sound pressure at a set of field points and the Helmholtz integral equation to reconstruct the normal surface velocity. The number of sound pressure measurements is considerably less than the number of surface vibration nodes. An overview of inverse numerical acoustics is presented and compared with other holography techniques such as nearfield acoustical holography and the Helmholtz equation least squares method. In order to obtain an acceptable reproduction of the surface vibration, several critical factors such as the field point selection and the effect of experimental errors have to be handled properly. Other practical considerations such as the use of few measured velocities and regularization techniques will also be presented. Examples will include a diesel engine, a transmission housing and an engine cover.

  20. Inverse problems in linear transport theory

    International Nuclear Information System (INIS)

    Dressler, K.

    1988-01-01

    Inverse problems for a class of linear kinetic equations are investigated. The aim is to identify the scattering kernel of a transport equation (corresponding to the structure of a background medium) by observing the 'albedo' part of the solution operator for the corresponding direct initial boundary value problem. This means to get information on some integral operator in an integrodifferential equation through on overdetermined boundary value problem. We first derive a constructive method for solving direct halfspace problems and prove a new factorization theorem for the solutions. Using this result we investigate stationary inverse problems with respect to well posedness (e.g. reduce them to classical ill-posed problems, such as integral equations of first kind). In the time-dependent case we show that a quite general inverse problem is well posed and solve it constructively. (orig.)

  1. FAST INVERSION OF SOLAR Ca II SPECTRA

    International Nuclear Information System (INIS)

    Beck, C.; Choudhary, D. P.; Rezaei, R.; Louis, R. E.

    2015-01-01

    We present a fast (<<1 s per profile) inversion code for solar Ca II lines. The code uses an archive of spectra that are synthesized prior to the inversion under the assumption of local thermodynamic equilibrium (LTE). We show that it can be successfully applied to spectrograph data or more sparsely sampled spectra from two-dimensional spectrometers. From a comparison to a non-LTE inversion of the same set of spectra, we derive a first-order non-LTE correction to the temperature stratifications derived in the LTE approach. The correction factor is close to unity up to log τ ∼ –3 and increases to values of 2.5 and 4 at log τ = –6 in the quiet Sun and the umbra, respectively

  2. Applications of inverse and algebraic scattering theories

    International Nuclear Information System (INIS)

    Amos, K.

    1997-01-01

    Inverse scattering theories, algebraic scattering theory and exactly solvable scattering potentials are diverse ways by which scattering potentials can be defined from S-functions specified by fits to fixed energy, quantal scattering data. Applications have been made in nuclear (heavy ion and nucleon-nucleus scattering), atomic and molecular (electron scattering from simple molecules) systems. Three inverse scattering approaches are considered in detail; the semiclassical WKB and fully quantal Lipperheide-Fiedeldey method, than algebraic scattering theory is applied to heavy ion scattering and finally the exactly solvable Ginocchio potentials. Some nuclear results are ambiguous but the atomic and molecular inversion potentials are in good agreement with postulated forms. 21 refs., 12 figs

  3. Probabilistic inversion for chicken processing lines

    Energy Technology Data Exchange (ETDEWEB)

    Cooke, Roger M. [Department of Mathematics, Delft University of Technology, Delft (Netherlands)]. E-mail: r.m.cooke@ewi.tudelft.nl; Nauta, Maarten [Microbiological Laboratory for Health Protection RIVM, Bilthoven (Netherlands); Havelaar, Arie H. [Microbiological Laboratory for Health Protection RIVM, Bilthoven (Netherlands); Fels, Ine van der [Microbiological Laboratory for Health Protection RIVM, Bilthoven (Netherlands)

    2006-10-15

    We discuss an application of probabilistic inversion techniques to a model of campylobacter transmission in chicken processing lines. Such techniques are indicated when we wish to quantify a model which is new and perhaps unfamiliar to the expert community. In this case there are no measurements for estimating model parameters, and experts are typically unable to give a considered judgment. In such cases, experts are asked to quantify their uncertainty regarding variables which can be predicted by the model. The experts' distributions (after combination) are then pulled back onto the parameter space of the model, a process termed 'probabilistic inversion'. This study illustrates two such techniques, iterative proportional fitting (IPF) and PARmeter fitting for uncertain models (PARFUM). In addition, we illustrate how expert judgement on predicted observable quantities in combination with probabilistic inversion may be used for model validation and/or model criticism.

  4. Inverse osmotic process for radioactive laundry waste

    International Nuclear Information System (INIS)

    Ebara, Katsuya; Takahashi, Sankichi; Sugimoto, Yoshikazu; Yusa, Hideo; Hyakutake, Hiroshi.

    1977-01-01

    Purpose: To effectively recover the processing amount reduced in a continuous treatment. Method: Laundry waste containing radioactive substances discharged from a nuclear power plant is processed in an inverse osmotic process while adding starch digesting enzymes such as amylase and takadiastase, as well as soft spherical bodies such as sponge balls of a particle diameter capable of flowing in the flow of the liquid wastes along the inverse osmotic membrane pipe and having such a softness and roundness as not to damage the inverse osmotic membrane. This process can remove the floating materials such as thread dusts or hairs deposited on the membrane surface by the action of the soft elastic balls and remove paste or the like through decomposition by the digesting enzymes. Consequently, effective recovery can be attained for the reduced processing amount. (Furukawa, Y.)

  5. Probabilistic inversion for chicken processing lines

    International Nuclear Information System (INIS)

    Cooke, Roger M.; Nauta, Maarten; Havelaar, Arie H.; Fels, Ine van der

    2006-01-01

    We discuss an application of probabilistic inversion techniques to a model of campylobacter transmission in chicken processing lines. Such techniques are indicated when we wish to quantify a model which is new and perhaps unfamiliar to the expert community. In this case there are no measurements for estimating model parameters, and experts are typically unable to give a considered judgment. In such cases, experts are asked to quantify their uncertainty regarding variables which can be predicted by the model. The experts' distributions (after combination) are then pulled back onto the parameter space of the model, a process termed 'probabilistic inversion'. This study illustrates two such techniques, iterative proportional fitting (IPF) and PARmeter fitting for uncertain models (PARFUM). In addition, we illustrate how expert judgement on predicted observable quantities in combination with probabilistic inversion may be used for model validation and/or model criticism

  6. Inverse Kinematic Analysis Of A Quadruped Robot

    Directory of Open Access Journals (Sweden)

    Muhammed Arif Sen

    2017-09-01

    Full Text Available This paper presents an inverse kinematics program of a quadruped robot. The kinematics analysis is main problem in the manipulators and robots. Dynamic and kinematic structures of quadruped robots are very complex compared to industrial and wheeled robots. In this study inverse kinematics solutions for a quadruped robot with 3 degrees of freedom on each leg are presented. Denavit-Hartenberg D-H method are used for the forward kinematic. The inverse kinematic equations obtained by the geometrical and mathematical methods are coded in MATLAB. And thus a program is obtained that calculate the legs joint angles corresponding to desired various orientations of robot and endpoints of legs. Also the program provides the body orientations of robot in graphical form. The angular positions of joints obtained corresponding to desired different orientations of robot and endpoints of legs are given in this study.

  7. 1-D DC Resistivity Inversion Using Singular Value Decomposition and Levenberg-Marquardt’s Inversion Schemes

    Science.gov (United States)

    Heriyanto, M.; Srigutomo, W.

    2017-07-01

    Exploration of natural or energy resources requires geophysical survey to determine the subsurface structure, such as DC resistivity method. In this research, field and synthetic data were used using Schlumberger configuration. One-dimensional (1-D) DC resistivity inversion was carried out using Singular Value Decomposition (SVD) and Levenberg-Marquardt (LM) techniques to obtain layered resistivity structure. We have developed software to perform both inversion methods accompanied by a user-friendly interface. Both of the methods were compared one another to determine the number of iteration, robust to noise, elapsed time of computation, and inversion results. SVD inversion generated faster process and better results than LM did. The inversion showed both of these methods were appropriate to interpret subsurface resistivity structure.

  8. Variability in surface inversion characteristics over India in winter ...

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Earth System Science; Volume 120; Issue 1. Variability in surface inversion ... Decadal variations in inversion strength show weak inversion frequencies decreasing from the 1st to the 3rd decade while moderate/strong inversions occur more frequently at most stations. Frequencies of very strong ...

  9. Trimming and procrastination as inversion techniques

    Science.gov (United States)

    Backus, George E.

    1996-12-01

    By examining the processes of truncating and approximating the model space (trimming it), and by committing to neither the objectivist nor the subjectivist interpretation of probability (procrastinating), we construct a formal scheme for solving linear and non-linear geophysical inverse problems. The necessary prior information about the correct model xE can be either a collection of inequalities or a probability measure describing where xE was likely to be in the model space X before the data vector y0 was measured. The results of the inversion are (1) a vector z0 that estimates some numerical properties zE of xE; (2) an estimate of the error δz = z0 - zE. As y0 is finite dimensional, so is z0, and hence in principle inversion cannot describe all of xE. The error δz is studied under successively more specialized assumptions about the inverse problem, culminating in a complete analysis of the linear inverse problem with a prior quadratic bound on xE. Our formalism appears to encompass and provide error estimates for many of the inversion schemes current in geomagnetism, and would be equally applicable in geodesy and seismology if adequate prior information were available there. As an idealized example we study the magnetic field at the core-mantle boundary, using satellite measurements of field elements at sites assumed to be almost uniformly distributed on a single spherical surface. Magnetospheric currents are neglected and the crustal field is idealized as a random process with rotationally invariant statistics. We find that an appropriate data compression diagonalizes the variance matrix of the crustal signal and permits an analytic trimming of the idealized problem.

  10. Mesoscale inversion of carbon sources and sinks

    International Nuclear Information System (INIS)

    Lauvaux, T.

    2008-01-01

    Inverse methods at large scales are used to infer the spatial variability of carbon sources and sinks over the continents but their uncertainties remain large. Atmospheric concentrations integrate the surface flux variability but atmospheric transport models at low resolution are not able to simulate properly the local atmospheric dynamics at the measurement sites. However, the inverse estimates are more representative of the large spatial heterogeneity of the ecosystems compared to direct flux measurements. Top-down and bottom-up methods that aim at quantifying the carbon exchanges between the surface and the atmosphere correspond to different scales and are not easily comparable. During this phD, a mesoscale inverse system was developed to correct carbon fluxes at 8 km resolution. The high resolution transport model MesoNH was used to simulate accurately the variability of the atmospheric concentrations, which allowed us to reduce the uncertainty of the retrieved fluxes. All the measurements used here were observed during the intensive regional campaign CERES of May and June 2005, during which several instrumented towers measured CO 2 concentrations and fluxes in the South West of France. Airborne measurements allowed us to observe concentrations at high altitude but also CO 2 surface fluxes over large parts of the domain. First, the capacity of the inverse system to correct the CO 2 fluxes was estimated using pseudo-data experiments. The largest fraction of the concentration variability was attributed to regional surface fluxes over an area of about 300 km around the site locations depending on the meteorological conditions. Second, an ensemble of simulations allowed us to define the spatial and temporal structures of the transport errors. Finally, the inverse fluxes at 8 km resolution were compared to direct flux measurements. The inverse system has been validated in space and time and showed an improvement of the first guess fluxes from a vegetation model

  11. An orthorhombic polymorph of pyrazino[2,3-f][1,10]phenanthroline-2,3-dicarbonitrile

    Directory of Open Access Journals (Sweden)

    Wei Yang

    2011-12-01

    Full Text Available The title compound, C16H6N6, is a polymorph of the previously reported structure [Kozlov & Goldberg (2008. Acta Cryst. C64, o498–o501]. Unlike the previously reported monoclinic polymorph (space group P21/c, Z = 8, the title compound reveals orthorhombic symmetry (space group Pnma, Z = 4. The molecule shows crystallographic mirror symmetry, while the previously reported structure exhibits two independent molecules per asymmetric unit. In the title compound, adjacent molecules are essentially parallel along the c axis and tend to be vertical along the b axis with dihedral angles of 72.02 (6°. However, in the reported polymorph, the entire crystal structure shows an antiparallel arrangement of adjacent columns related by inversion centers and the two independent molecules are nearly parallel with a dihedral angle of 2.48 (6°.

  12. Polymorphic Types in ACL2

    Directory of Open Access Journals (Sweden)

    Benjamin Selfridge

    2014-06-01

    Full Text Available This paper describes a tool suite for the ACL2 programming language which incorporates certain ideas from the Hindley-Milner paradigm of functional programming (as exemplified in popular languages like ML and Haskell, including a "typed" style of programming with the ability to define polymorphic types. These ideas are introduced via macros into the language of ACL2, taking advantage of ACL2's guard-checking mechanism to perform type checking on both function definitions and theorems. Finally, we discuss how these macros were used to implement features of Specware, a software specification and implementation system.

  13. Vector continued fractions using a generalized inverse

    International Nuclear Information System (INIS)

    Haydock, Roger; Nex, C M M; Wexler, Geoffrey

    2004-01-01

    A real vector space combined with an inverse (involution) for vectors is sufficient to define a vector continued fraction whose parameters consist of vector shifts and changes of scale. The choice of sign for different components of the vector inverse permits construction of vector analogues of the Jacobi continued fraction. These vector Jacobi fractions are related to vector and scalar-valued polynomial functions of the vectors, which satisfy recurrence relations similar to those of orthogonal polynomials. The vector Jacobi fraction has strong convergence properties which are demonstrated analytically, and illustrated numerically

  14. Direct and Inverse problems in Electrocardiography

    Science.gov (United States)

    Boulakia, M.; Fernández, M. A.; Gerbeau, J. F.; Zemzemi, N.

    2008-09-01

    We present numerical results related to the direct and the inverse problems in electrocardiography. The electrical activity of the heart is described by the bidomain equations. The electrocardiograms (ECGs) recorded in different points on the body surface are obtained by coupling the bidomain equation to a Laplace equation in the torso. The simulated ECGs are quite satisfactory. As regards the inverse problem, our goal is to estimate the parameters of the bidomain-torso model. Here we present some preliminary results of a parameter estimation for the torso model.

  15. Kinetic equation solution by inverse kinetic method

    International Nuclear Information System (INIS)

    Salas, G.

    1983-01-01

    We propose a computer program (CAMU) which permits to solve the inverse kinetic equation. The CAMU code is written in HPL language for a HP 982 A microcomputer with a peripheral interface HP 9876 A ''thermal graphic printer''. The CAMU code solves the inverse kinetic equation by taking as data entry the output of the ionization chambers and integrating the equation with the help of the Simpson method. With this program we calculate the evolution of the reactivity in time for a given disturbance

  16. Inverse statistical approach in heartbeat time series

    International Nuclear Information System (INIS)

    Ebadi, H; Shirazi, A H; Mani, Ali R; Jafari, G R

    2011-01-01

    We present an investigation on heart cycle time series, using inverse statistical analysis, a concept borrowed from studying turbulence. Using this approach, we studied the distribution of the exit times needed to achieve a predefined level of heart rate alteration. Such analysis uncovers the most likely waiting time needed to reach a certain change in the rate of heart beat. This analysis showed a significant difference between the raw data and shuffled data, when the heart rate accelerates or decelerates to a rare event. We also report that inverse statistical analysis can distinguish between the electrocardiograms taken from healthy volunteers and patients with heart failure

  17. Molecular seismology: an inverse problem in nanobiology.

    Science.gov (United States)

    Hinow, Peter; Boczko, Erik M

    2007-05-07

    The density profile of an elastic fiber like DNA will change in space and time as ligands associate with it. This observation affords a new direction in single molecule studies provided that density profiles can be measured in space and time. In fact, this is precisely the objective of seismology, where the mathematics of inverse problems have been employed with success. We argue that inverse problems in elastic media can be directly applied to biophysical problems of fiber-ligand association, and demonstrate that robust algorithms exist to perform density reconstruction in the condensed phase.

  18. The Inverse Perspective in Byzantine Painting

    Directory of Open Access Journals (Sweden)

    Maria Urmă

    2014-11-01

    Full Text Available The inverse perspective is a method of representing spatial depth used only in Byzantine painting. It is different from Renaissance perspective (a method of realistic, conventional, subjective, subject to a single point of view. The inverse perspective, with two-dimensional axonometric representations, is more complex, offering multiple possibilities of symbolization. Various theories have considered either optical-geometric aspect or artistic-cultural aspect as the main factors that generated it. But they have not led to a unified conclusion. This study highlights the common elements of these theories, bringing together the two issues and providing a philosophical-religious interpretation.

  19. Direct and inverse scattering for viscoelastic media

    International Nuclear Information System (INIS)

    Ammicht, E.; Corones, J.P.; Krueger, R.J.

    1987-01-01

    A time domain approach to direct and inverse scattering problems for one-dimensional viscoelastic media is presented. Such media can be characterized as having a constitutive relation between stress and strain which involves the past history of the strain through a memory function, the relaxation modulus. In the approach in this article, the relaxation modulus of a material is shown to be related to the reflection properties of the material. This relation provides a constructive algorithm for direct and inverse scattering problems. A numerical implementation of this algorithm is tested on several problems involving realistic relaxation moduli

  20. Anisotropic wave-equation traveltime and waveform inversion

    KAUST Repository

    Feng, Shihang

    2016-09-06

    The wave-equation traveltime and waveform inversion (WTW) methodology is developed to invert for anisotropic parameters in a vertical transverse isotropic (VTI) meidum. The simultaneous inversion of anisotropic parameters v0, ε and δ is initially performed using the wave-equation traveltime inversion (WT) method. The WT tomograms are then used as starting background models for VTI full waveform inversion. Preliminary numerical tests on synthetic data demonstrate the feasibility of this method for multi-parameter inversion.

  1. Inverse and Ill-posed Problems Theory and Applications

    CERN Document Server

    Kabanikhin, S I

    2011-01-01

    The text demonstrates the methods for proving the existence (if et all) and finding of inverse and ill-posed problems solutions in linear algebra, integral and operator equations, integral geometry, spectral inverse problems, and inverse scattering problems. It is given comprehensive background material for linear ill-posed problems and for coefficient inverse problems for hyperbolic, parabolic, and elliptic equations. A lot of examples for inverse problems from physics, geophysics, biology, medicine, and other areas of application of mathematics are included.

  2. Inverse Kinematics with Closed Form Solution for Denso Robot Manipulator

    OpenAIRE

    Prasetia, Ikhsan Eka; Agustinah, Trihastuti

    2015-01-01

    In this paper, the forward kinematics and inverse kinematics used on the Denso robot manipulator which has a 6-DOF. The forward kinematics will result in the desired position by end-effector, while inverse kinematics produce angel on each joint. Inverse kinematics problem are very difficult, therefor to obtain the solution of inverse kinematics using closed form solution with geometry approach. The simulation result obtained from forward kinematics and inverse kinematics is determining desire...

  3. Polymorphism

    Indian Academy of Sciences (India)

    of the cancer 'chronic myeloid leukemia'. Novartis invented imatinib in 1992 and patented it in 1993 in US and other countries. The company applied for a patent in India in 1998 for β-crystalline form of imatinib mesylate, which led to a legal scrutiny of Patents Act 1970. suggested that virtually 'every compound has different ...

  4. Influence of thiopurine methyltransferase gene polymorphism on ...

    Indian Academy of Sciences (India)

    Thiopurine methyltransferase (TPMT) gene polymorphism regulates thiopurine therapeutic efficacy and toxicity. The aim of this study was to determine the influence of TPMT gene polymorphism in Egyptian children with acute lymphoblastic leukaemia (ALL). Sixty-four patients with ALL, T lineage (27%) and pre-B phenotype ...

  5. MHC polymorphism under host-pathogen coevolution

    NARCIS (Netherlands)

    Borghans, J.A.M.; Beltman, J.B.; Boer, R.J. de

    2004-01-01

    The genes encoding major histocompatibility (MHC) molecules are among the most polymorphic genes known for vertebrates. Since MHC molecules play an important role in the induction of immune responses, the evolution of MHC polymorphism is often explained in terms of increased protection of hosts

  6. Methylenetetrahydrofolate reductase A1298C polymorphism and ...

    African Journals Online (AJOL)

    Methylenetetrahydrofolate reductase A1298C polymorphism and breast cancer risk: A meta analysis of 33 studies. ... were searched for case‑control studies relating the association between MTHFR A1298C polymorphism and BC risk and estimated summary odds ratios (ORs) with confidence intervals (CIs) for assessment.

  7. Hoare type theory, polymorphism and separation

    DEFF Research Database (Denmark)

    Nanevski, Alexandar; Morrisett, J. Gregory; Birkedal, Lars

    2008-01-01

    with higher-order functions and type polymorphism. We further show that in the presence of type polymorphism, it becomes possible to interpret the Hoare types in the “small footprint” manner, as advocated by separation logic, whereby specifications tightly describe the state required by the computation. We...

  8. Mechanism of unusual polymorph transformations in calcium ...

    Indian Academy of Sciences (India)

    research for many years. However, till date the ... Polymorph selection plays key role in biominerali- zation as the .... Mechanism of unusual polymorph transformations in calcium carbonate. 1401. In te n s ity. 2-Theta - Scale. 20. 30. 40. 50. 60. V. V110. V. V. V. V. V. Refluxed for 75 mins: 100% Aragonite. A221. A. A. A. A. A.

  9. Genetic polymorphism of serotonin transporter 5-HTTLPR ...

    Indian Academy of Sciences (India)

    insertion/deletion polymorphism in the 5 - flanking promoter region (5-HTTLPR). This gene has received considerable atten- tion in attempts to understand the molecular determinants of smoking. Therefore, in the present study, the relationship between genetic polymorphism of serotonin transporter in smoking behaviour is ...

  10. using random amplified polymorphic DNA (RAPD)

    African Journals Online (AJOL)

    To study the pattern of genetic diversity in 45 genotypes of common bean, 19 RAPD primers were used. Of 253 bands produced, 236 bands (94.22%) were polymorphic in which maximum number (20 polymorphic bands) were observed in the profiles of the primer OPB-07. Highest PIC value (0.79) was observed for the ...

  11. Energetics Underlying Twist Polymorphisms in Amyloid Fibrils

    NARCIS (Netherlands)

    Periole, Xavier; Huber, Thomas; Bonito-Oliva, Alessandra; Aberg, Karina C; van der Wel, Patrick C A; Sakmar, Thomas P; Marrink, Siewert J

    2018-01-01

    Amyloid fibrils are highly ordered protein aggregates associated with more than 40 human diseases. The exact conditions in which the fibrils are grown determine many types of reported fibril polymorphism, including different twist patterns. Twist-based polymorphs display unique mechanical properties

  12. gene polymorphism and its serum lev

    Indian Academy of Sciences (India)

    Navya

    Running title: Interleukin-10 gene polymorphism in metabolic syndrome. Keywords: ... polymorphisms, IL-10 -819 C >T and -592C >A were significantly associated with risk of metabolic syndrome. The mutant ..... Upon analysis for correlation of IL-10 serum level with clinico-biochemical characteristics of cases and controls,.

  13. Introduction to inverse problems for differential equations

    CERN Document Server

    Hasanov Hasanoğlu, Alemdar

    2017-01-01

    This book presents a systematic exposition of the main ideas and methods in treating inverse problems for PDEs arising in basic mathematical models, though it makes no claim to being exhaustive. Mathematical models of most physical phenomena are governed by initial and boundary value problems for PDEs, and inverse problems governed by these equations arise naturally in nearly all branches of science and engineering. The book’s content, especially in the Introduction and Part I, is self-contained and is intended to also be accessible for beginning graduate students, whose mathematical background includes only basic courses in advanced calculus, PDEs and functional analysis. Further, the book can be used as the backbone for a lecture course on inverse and ill-posed problems for partial differential equations. In turn, the second part of the book consists of six nearly-independent chapters. The choice of these chapters was motivated by the fact that the inverse coefficient and source problems considered here a...

  14. Seismic Waveform Inversion by Stochastic Optimization

    Directory of Open Access Journals (Sweden)

    Tristan van Leeuwen

    2011-01-01

    Full Text Available We explore the use of stochastic optimization methods for seismic waveform inversion. The basic principle of such methods is to randomly draw a batch of realizations of a given misfit function and goes back to the 1950s. The ultimate goal of such an approach is to dramatically reduce the computational cost involved in evaluating the misfit. Following earlier work, we introduce the stochasticity in waveform inversion problem in a rigorous way via a technique called randomized trace estimation. We then review theoretical results that underlie recent developments in the use of stochastic methods for waveform inversion. We present numerical experiments to illustrate the behavior of different types of stochastic optimization methods and investigate the sensitivity to the batch size and the noise level in the data. We find that it is possible to reproduce results that are qualitatively similar to the solution of the full problem with modest batch sizes, even on noisy data. Each iteration of the corresponding stochastic methods requires an order of magnitude fewer PDE solves than a comparable deterministic method applied to the full problem, which may lead to an order of magnitude speedup for waveform inversion in practice.

  15. Modelling and inversion of local magnetic anomalies

    International Nuclear Information System (INIS)

    Quesnel, Y; Langlais, B; Sotin, C; Galdéano, A

    2008-01-01

    We present a method—named as MILMA for modelling and inversion of local magnetic anomalies—that combines forward and inverse modelling of aeromagnetic data to characterize both magnetization properties and location of unconstrained local sources. Parameters of simple-shape magnetized bodies (cylinder, prism or sphere) are first adjusted by trial and error to predict the signal. Their parameters provide a priori information for inversion of the measurements. Here, a generalized nonlinear approach with a least-squares criterion is adopted to seek the best parameters of the sphere (dipole). This inversion step allows the model to be more objectively adjusted to fit the magnetic signal. The validity of the MILMA method is demonstrated through synthetic and real cases using aeromagnetic measurements. Tests with synthetic data reveal accurate results in terms of depth source, whatever be the number of sources. The MILMA method is then used with real measurements to constrain the properties of the magnetized units of the Champtoceaux complex (France). The resulting parameters correlate with the crustal structure and properties revealed by other geological and geophysical surveys in the same area. The MILMA method can therefore be used to investigate the properties of poorly constrained lithospheric magnetized sources

  16. Uterine inversion complicating traditional termination of pregnancy ...

    African Journals Online (AJOL)

    Abortion services remain cladenstine and unsafe in most parts of Africa. This is a case of a mid-trimester abortion induced by traditional methods which resulted in uterine inversion, a previously unreported complication of induced abortion. Until abortion services are accessible and safe on the continent, morbidity and ...

  17. Improving Variational Autoencoders with Inverse Autoregressive Flow

    NARCIS (Netherlands)

    Kingma, D.; Salimans, T.; Josefowicz, R.; Chen, X.; Sutskever, I.; Welling, M.; Lee, D.D.; von Luxburg, U.; Garnett, R.; Sugiyama, M.; Guyon, I.

    2017-01-01

    The framework of normalizing flows provides a general strategy for flexible variational inference of posteriors over latent variables. We propose a new type of normalizing flow, inverse autoregressive flow (IAF), that, in contrast to earlier published flows, scales well to high-dimensional latent

  18. ILIGRA : An Efficient Inverse Line Graph Algorithm

    NARCIS (Netherlands)

    Liu, D.; Trajanovski, S.; Van Mieghem, P.

    2014-01-01

    This paper presents a new and efficient algorithm, ILIGRA, for inverse line graph construction. Given a line graph H, ILIGRA constructs its root graph G with the time complexity being linear in the number of nodes in H. If ILIGRA does not know whether the given graph H is a line graph, it firstly

  19. Solving Direct and Inverse Heat Conduction Problems

    CERN Document Server

    Taler, Jan

    2006-01-01

    Presents a solution for direct and inverse heat conduction problems. This work discusses the theoretical basis for the heat transfer process in the first part. It presents selected theoretical and numerical problems in the form of exercises with their subsequent solutions in the second part

  20. Inverse scattering with supersymmetric quantum mechanics

    International Nuclear Information System (INIS)

    Baye, Daniel; Sparenberg, Jean-Marc

    2004-01-01

    The application of supersymmetric quantum mechanics to the inverse scattering problem is reviewed. The main difference with standard treatments of the inverse problem lies in the simple and natural extension to potentials with singularities at the origin and with a Coulomb behaviour at infinity. The most general form of potentials which are phase-equivalent to a given potential is discussed. The use of singular potentials allows adding or removing states from the bound spectrum without contradicting the Levinson theorem. Physical applications of phase-equivalent potentials in nuclear reactions and in three-body systems are described. Derivation of a potential from the phase shift at fixed orbital momentum can also be performed with the supersymmetric inversion by using a Bargmann-type approximation of the scattering matrix or phase shift. A unique singular potential without bound states can be obtained from any phase shift. A limited number of bound states depending on the singularity can then be added. This inversion procedure is illustrated with nucleon-nucleon scattering

  1. Seismic processing in the inverse data space

    NARCIS (Netherlands)

    Berkhout, A.J.

    2006-01-01

    Until now, seismic processing has been carried out by applying inverse filters in the forward data space. Because the acquired data of a seismic survey is always discrete, seismic measurements in the forward data space can be arranged conveniently in a data matrix (P). Each column in the data matrix

  2. Inversion layer thermopower in high magnetic field

    Energy Technology Data Exchange (ETDEWEB)

    Girvin, S.M.; Jonson, M.

    1982-11-20

    The authors calculate the thermopower of an ideal two-dimensional electron gas (inversion layer) in a quantising magnetic field. They find that the thermopower is a universal function of the reduced temperature which has a novel dependence on the chemical potential.

  3. Inverse Problem for a Curved Quantum Guide

    Directory of Open Access Journals (Sweden)

    Laure Cardoulis

    2012-01-01

    Full Text Available We consider the Dirichlet Laplacian operator −Δ on a curved quantum guide in ℝ  n(n=2,3 with an asymptotically straight reference curve. We give uniqueness results for the inverse problem associated to the reconstruction of the curvature by using either observations of spectral data or a boot-strapping method.

  4. Neural Network Learning as an Inverse Problem

    Czech Academy of Sciences Publication Activity Database

    Kůrková, Věra

    2005-01-01

    Roč. 13, č. 5 (2005), s. 551-559 ISSN 1367-0751 R&D Projects: GA AV ČR 1ET100300517 Institutional research plan: CEZ:AV0Z10300504 Keywords : learning from data * generalization * empirical error functional * inverse problem * evaluation operator * kernel methods Subject RIV: BA - General Mathematics Impact factor: 0.382, year: 2005

  5. Nonlinear approximation with dictionaries. II. Inverse Estimates

    DEFF Research Database (Denmark)

    Gribonval, Rémi; Nielsen, Morten

    2006-01-01

    In this paper, which is the sequel to [16], we study inverse estimates of the Bernstein type for nonlinear approximation with structured redundant dictionaries in a Banach space. The main results are for blockwise incoherent dictionaries in Hilbert spaces, which generalize the notion of joint block...

  6. Nonlinear approximation with dictionaries,.. II: Inverse estimates

    DEFF Research Database (Denmark)

    Gribonval, Rémi; Nielsen, Morten

    In this paper we study inverse estimates of the Bernstein type for nonlinear approximation with structured redundant dictionaries in a Banach space. The main results are for separated decomposable dictionaries in Hilbert spaces, which generalize the notion of joint block-diagonal mutually...

  7. Inverse acoustic problem of N homogeneous scatterers

    DEFF Research Database (Denmark)

    Berntsen, Svend

    2002-01-01

    The three-dimensional inverse acoustic medium problem of N homogeneous objects with known geometry and location is considered. It is proven that one scattering experiment is sufficient for the unique determination of the complex wavenumbers of the objects. The mapping from the scattered fields...

  8. Probabilistic Geoacoustic Inversion in Complex Environments

    Science.gov (United States)

    2015-09-30

    to capture seabed variability and uncertainties consistent with data resolution, and (2) improved numerical methods for parameter and uncertainty...advancing Bayesian inference applications. • Dettmer’s work at Australian National University in seismology is closely related to some of the methods ...long-range inversion methods can fail to provide sufficient resolution. For proper quantitative examination of variability, parameter uncertainty must

  9. Multiscale Phase Inversion of Seismic Data

    KAUST Repository

    Fu, Lei

    2017-12-02

    We present a scheme for multiscale phase inversion (MPI) of seismic data that is less sensitive to the unmodeled physics of wave propagation and a poor starting model than standard full waveform inversion (FWI). To avoid cycle-skipping, the multiscale strategy temporally integrates the traces several times, i.e. high-order integration, to produce low-boost seismograms that are used as input data for the initial iterations of MPI. As the iterations proceed, higher frequencies in the data are boosted by using integrated traces of lower order as the input data. The input data are also filtered into different narrow frequency bands for the MPI implementation. At low frequencies, we show that MPI with windowed reflections approximates wave equation inversion of the reflection traveltimes, except no traveltime picking is needed. Numerical results with synthetic acoustic data show that MPI is more robust than conventional multiscale FWI when the initial model is far from the true model. Results from synthetic viscoacoustic and elastic data show that MPI is less sensitive than FWI to some of the unmodeled physics. Inversion of marine data shows that MPI is more robust and produces modestly more accurate results than FWI for this data set.

  10. Tectonic inversion in the Wandel Sea Basin

    DEFF Research Database (Denmark)

    Svennevig, Kristian; Guarnieri, Pierpaolo; Stemmerik, Lars

    2016-01-01

    Sheet and an upper Hondal Elv Thrust Sheet separated by a subhorizontal fault: the Central Detachment. The style of deformation and the structures described are interpreted as the result of Paleocene-Eocene N-S directed compression resulting in basin inversion with strike-slip faults only having minor...

  11. n-Colour self-inverse compositions

    Indian Academy of Sciences (India)

    functions and a summation formula are obtained. Two new binomial identities with combinatorial meaning are also given. Keywords. Compositions; n-colour compositions; self-inverse compositions; seq- uences; recurrence formulas; generating functions; binomial identities. 1. Introduction. In the classical theory of partitions, ...

  12. Inverse problem in neutron transport and radiation

    International Nuclear Information System (INIS)

    Barichello, L.B.; Vilhena, M.T. de

    1993-01-01

    In this work the LTS N method is applied to solve a inverse problem which consists on the determination of the incident angular fluxes at the boundary from the known values of the scalar flux at interior points. Numerical simulations are presented. (author)

  13. Swarm Level 2 Comprehensive Inversion, 2016 Production

    DEFF Research Database (Denmark)

    Tøffner-Clausen, Lars; Sabaka, Terence; Olsen, Nils

    In the framework of the ESA Earth Observation Magnetic Mapping Mission Swarm, the Expert Support Laboratories (ESL) provides high quality Level 2 Products describing a.o. the magnetic fields of the Earth. This poster provides details of the Level 2 Products from the Comprehensive Inversion chain...

  14. Modeling and Inversion of Scattered Surface waves

    NARCIS (Netherlands)

    Riyanti, C.D.

    2005-01-01

    In this thesis, we present a modeling method based on a domain-type integral representation for waves propagating along the surface of the Earth which have been scattered in the vicinity of the source or the receivers. Using this model as starting point, we formulate an inversion scheme to estimate

  15. Semi-Inversion of Functional Parameters

    DEFF Research Database (Denmark)

    Mogensen, Torben Ægidius

    2008-01-01

    Semi-invertering er en generalisering af invertering: Et programs semi-inverse tager nogle af dets inddata og nogen af dets uddata og returnerer de resterende ind- og uddata. Tidligere arbejder har beskrevet semi-invertering af et førsteordens funktionssprog. Vi udvider nu med funktionelle...

  16. Normalized impedance function and the straightforward inversion ...

    Indian Academy of Sciences (India)

    The linear straightforward inversion scheme (SIS),developed by the authors employing the concept of equal penetration layers,has been used to validate the proposed apparent resistivity functions.For this purpose,several ... Department of Earth Sciences, Indian Institute of Technology Roorkee, Roorkee, UA 247 667, India.

  17. Air-induced inverse Chladni patterns

    NARCIS (Netherlands)

    van Gerner, H.J.; van der Weele, J.P.; van der Hoef, Martin Anton; van der Meer, Roger M.

    2011-01-01

    When very light particles are sprinkled on a resonating horizontal plate, inverse Chladni patterns are formed. Instead of going to the nodal lines of the plate, where they would form a standard Chladni pattern, the particles are dragged to the antinodes by the air currents induced by the vibration

  18. Homogeneity of common cosmopolitan inversion frequencies in ...

    Indian Academy of Sciences (India)

    Unknown

    2Present address: Population Genomics and Evolution Laboratory, Department of Biology,. Poornaprajna Institute of Scientific Research, ... climatic variables, suggesting that natural selection is operating on inversions (Krimbas and .... ses of other genetic markers (preferably at the molecular level). However, although our ...

  19. Rapid probabilistic source inversion using pattern recognition

    NARCIS (Netherlands)

    Käufl, Paul J.

    2015-01-01

    Numerous problems in the field of seismology require the determination of parameters of a physical model that are compatible with a set of observations and prior assumptions. This type of problem is generally termed inverse problem. While, in many cases, we are able to predict observations, given a

  20. Inversion of e-simple Block Matrices

    Czech Academy of Sciences Publication Activity Database

    Fiedler, Miroslav

    2005-01-01

    Roč. 400, - (2005), s. 231-241 ISSN 0024-3795 R&D Projects: GA AV ČR IAA1030302 Institutional research plan: CEZ:AV0Z10300504 Keywords : matrix inversion * M-matrix * unipathic graph * e-simple graph Subject RIV: BA - General Mathematics Impact factor: 0.590, year: 2005

  1. Frnakenstein: multiple target inverse RNA folding

    Directory of Open Access Journals (Sweden)

    Lyngsø Rune B

    2012-10-01

    Full Text Available Abstract Background RNA secondary structure prediction, or folding, is a classic problem in bioinformatics: given a sequence of nucleotides, the aim is to predict the base pairs formed in its three dimensional conformation. The inverse problem of designing a sequence folding into a particular target structure has only more recently received notable interest. With a growing appreciation and understanding of the functional and structural properties of RNA motifs, and a growing interest in utilising biomolecules in nano-scale designs, the interest in the inverse RNA folding problem is bound to increase. However, whereas the RNA folding problem from an algorithmic viewpoint has an elegant and efficient solution, the inverse RNA folding problem appears to be hard. Results In this paper we present a genetic algorithm approach to solve the inverse folding problem. The main aims of the development was to address the hitherto mostly ignored extension of solving the inverse folding problem, the multi-target inverse folding problem, while simultaneously designing a method with superior performance when measured on the quality of designed sequences. The genetic algorithm has been implemented as a Python program called Frnakenstein. It was benchmarked against four existing methods and several data sets totalling 769 real and predicted single structure targets, and on 292 two structure targets. It performed as well as or better at finding sequences which folded in silico into the target structure than all existing methods, without the heavy bias towards CG base pairs that was observed for all other top performing methods. On the two structure targets it also performed well, generating a perfect design for about 80% of the targets. Conclusions Our method illustrates that successful designs for the inverse RNA folding problem does not necessarily have to rely on heavy biases in base pair and unpaired base distributions. The design problem seems to become more

  2. Dynamic Inversion of Intraslab Intermediate Depth Earthquakes

    Science.gov (United States)

    Madariaga, R. I.; Ruiz, S.

    2011-12-01

    We perform kinematic and dynamic inversions of the 24 July 2008 (Mw=6.8) Iwate northern Japan and 16 December 2007 (Mw 6.8) Michilla, Chile earthquakes using near field strong motion digital data. The data were filtered between 0.02 - 1 Hz. The rupture process is simulated with elliptical patches because we are looking for the average properties of the seismic rupture. The direct dynamic simulation problem was solved by a combination of finite difference modeling on a 32 km3 grid with 200 m spacing, and propagation from source to recorders using the AXITRA spectral program. For both earthquakes we used layered models of the structure. The Neighborhood algorithm and Monte Carlo methods are used to obtain the best fitting solutions and to explore the solution space. The optimum solutions are found comparing observed and synthetic records using an L2 norm. Both kinematic and dynamic inversions fit the observed data with misfits lower than 0.3. For both earthquakes, kinematic inversion shows strong trade-off between rupture velocity and maximum slip although the seismic moment remains invariant. Rupture velocities vary between sub-shear speeds to almost Rayleigh wave speeds. In the dynamic inversions 10 seismic source parameters were inverted for the Michilla earthquake and 8 parameters for the Iwate event, among them stress, friction and geometrical parameters. For the Iwate event the properties of the initial asperity at the source were not inverted because they could not be resolved by the data. In the dynamic inversion we observed a strong trade off among the friction law parameters. The best dynamic models form a family of that shares similar values of seismic moment and kappa (the ratio of released strain energy to energy release rate for friction). Kinematic and dynamic inversions in the 0.02 - 1 Hz frequency range form a set of non-unique solutions controlled by specific combinations of seismic source parameters. We discuss the origin of the non-uniqueness of

  3. Aspects and Polymorphism in AspectJ

    DEFF Research Database (Denmark)

    Lorenz, David Harel; Ernst, Erik

    2003-01-01

    There are two important points of view on inclusion or subtype polymorphism in object-oriented programs, namely polymorphic access and dynamic dispatch. These features are essential for object-oriented programming, and it is worthwhile to consider whether they are supported in aspect......-oriented programming (AOP). In AOP, pieces of crosscutting behavior are extracted from the base code and localized in aspects, losing as a result their polymorphic capabilities while introducing new and unexplored issues. In this paper, we explore what kinds of polymorphism AOP languages should support, using Aspect......J as the basis for the presentation. The results are not exclusive to AspectJ---aspectual polymorphism may make aspects in any comparable AOSD language more expressive and reusable across programs, while preserving safety....

  4. Dependence of paracentric inversion rate on tract length

    DEFF Research Database (Denmark)

    York, Thomas L; Durrett, Rick; Nielsen, Rasmus

    2007-01-01

    BACKGROUND: We develop a Bayesian method based on MCMC for estimating the relative rates of pericentric and paracentric inversions from marker data from two species. The method also allows estimation of the distribution of inversion tract lengths. RESULTS: We apply the method to data from...... Drosophila melanogaster and D. yakuba. We find that pericentric inversions occur at a much lower rate compared to paracentric inversions. The average paracentric inversion tract length is approx. 4.8 Mb with small inversions being more frequent than large inversions.If the two breakpoints defining...... a paracentric inversion tract are uniformly and independently distributed over chromosome arms there will be more short tract-length inversions than long; we find an even greater preponderance of short tract lengths than this would predict. Thus there appears to be a correlation between the positions...

  5. Polymorphism of xenobiotic metabolizm genes

    International Nuclear Information System (INIS)

    Freidin, M. B.; Ten, I. A.; Sevostiyanova, N. v.; Kokorina, Y. I.; Slominskaya, F. M.; Tereshchenko, I. V.; Kolomiets, S. A.; Takhanov, R. M.

    2004-01-01

    The genes of xenobiotic metabolism enzymes genes, also called biotransformation genes or environmental genes seems to be an important factor of individual susceptibility of common diseases of different genesis including cancer. At the present time, a systematic accumulation of information on the role of these genes polymorphism in predisposition to different disorders is carried out worldwide. To investigate a significance of biotransformation genes for cancer disorders in West Siberia region, we studies a polymorphism of genes CYP2C19 (Small-RFLP, 1 and 2 alleles in exone 5), GSTTI, GSTMI (null and normal alleles in both genes) in 47 lung cancer (LC) patients, 269 women with breast cancer (BC), and 130 controls from Tomsk, Russia. All participants were Russians. The frequency of GSTM1 null genotype in LC patients was significantly higher than that in controls (0.608?0.071 vs. 0.162?0-032; p<1x10-7 by Fisher exact test), whereas the frequency of null genotype in BC women was significantly lower in comparison with control women (0.545?0.039 vs. 0.747?0.053: p=0.005 by Fisher exact test). The latter circumstance seems to be unexpected because a priori one suggest that just null genotype of GSTM1 is of a pathological nature. Frequencies of null genotypes of GSTN1 in LC patients and GSTT1 in BC women corresponded to those in controls. In LC patients frequencies of CYP2C19 alleles did not differ significantly from values control sample, whereas in BC women the frequency of CYP2C19 2 allele was higher than that in control (0.340?0.20 vs. 0.182?0.034, p=4,9x10-4 by Fisher exact test). This allele encodes a truncated non-functional protein being a major cause of poor metabolism of some drugs. Thus, the data obtained allow us to conclude that polymorphisms of GSTTi, GSTM1, and CYP2C19 genes are associated with cancer disorders in Russians from West Siberia Even so, their pathogenetic meaning is specific with respect the type of malignant pathology. (Author)

  6. SISYPHUS: A high performance seismic inversion factory

    Science.gov (United States)

    Gokhberg, Alexey; Simutė, Saulė; Boehm, Christian; Fichtner, Andreas

    2016-04-01

    In the recent years the massively parallel high performance computers became the standard instruments for solving the forward and inverse problems in seismology. The respective software packages dedicated to forward and inverse waveform modelling specially designed for such computers (SPECFEM3D, SES3D) became mature and widely available. These packages achieve significant computational performance and provide researchers with an opportunity to solve problems of bigger size at higher resolution within a shorter time. However, a typical seismic inversion process contains various activities that are beyond the common solver functionality. They include management of information on seismic events and stations, 3D models, observed and synthetic seismograms, pre-processing of the observed signals, computation of misfits and adjoint sources, minimization of misfits, and process workflow management. These activities are time consuming, seldom sufficiently automated, and therefore represent a bottleneck that can substantially offset performance benefits provided by even the most powerful modern supercomputers. Furthermore, a typical system architecture of modern supercomputing platforms is oriented towards the maximum computational performance and provides limited standard facilities for automation of the supporting activities. We present a prototype solution that automates all aspects of the seismic inversion process and is tuned for the modern massively parallel high performance computing systems. We address several major aspects of the solution architecture, which include (1) design of an inversion state database for tracing all relevant aspects of the entire solution process, (2) design of an extensible workflow management framework, (3) integration with wave propagation solvers, (4) integration with optimization packages, (5) computation of misfits and adjoint sources, and (6) process monitoring. The inversion state database represents a hierarchical structure with

  7. Methylenetetrahydrofolate reductase (MTHFR polymorphisms and susceptibility for cervical lesions: a meta-analysis.

    Directory of Open Access Journals (Sweden)

    Shuyu Long

    Full Text Available BACKGROUND: The association between the methylenetetrahydrofolate reductase (MTHFR C677T/A1298C polymorphisms and the susceptibility to cervical lesions was unclear. This study was designed to investigate their precise association using a large-scale meta-analysis. METHODS: The previous 16 studies were identified by searching PubMed, Embase and CBM databases. The crude odds ratios and their corresponding 95% confidence intervals (CIs were used to estimate the association between the MTHFR C677T/A1298C polymorphisms and the susceptibility to the cervical lesions. The subgroup analyses were made on the following: pathological history, geographic region, ethnicity, source of controls and source of DNA for genotyping. RESULTS: Neither of the polymorphisms had a significant association with the susceptibility to the cervical lesions in all genetic models. Similar results were found in the subgroup analyses. No association was found between the MTHFR C677T polymorphism and the cervical lesions in the Asia or the America populations though a significant inverse association was found in the Europe population (additive model: P = 0.006, OR = 0.83, 95% CI = 0.72-0.95; CT vs. CC: P = 0.05, OR = 0.83, 95% CI = 0.69-1.00; TT vs. CC: P = 0.05, OR = 0.73, 95% CI = 0.53-1.00. Interestingly, women with the MTHFR A1298C polymorphisms had a marginally increased susceptibility to invasive cancer (ICC when compared with no carriers but no statistically significant difference in the dominant model (P = 0.06, OR = 1.21, 95% CI = 0.99-1.49 and AC vs. AA (P = 0.09, OR = 1.21, 95% CI = 0.97-1.51. CONCLUSIONS: The MTHFR C677T and A1298C polymorphisms may not increase the susceptibility to cervical lesions. However, the meta-analysis reveals a negative association between the MTHFR C677T polymorphisms and the cervical lesions, especially in the European populations. The marginal association between the MTHFR A1298C polymorphisms and the susceptibility to cervical cancer

  8. Methylenetetrahydrofolate reductase (MTHFR) polymorphisms and susceptibility for cervical lesions: a meta-analysis.

    Science.gov (United States)

    Long, Shuyu; Yang, Xingliang; Liu, Xiaojiao; Yang, Pei

    2012-01-01

    The association between the methylenetetrahydrofolate reductase (MTHFR) C677T/A1298C polymorphisms and the susceptibility to cervical lesions was unclear. This study was designed to investigate their precise association using a large-scale meta-analysis. The previous 16 studies were identified by searching PubMed, Embase and CBM databases. The crude odds ratios and their corresponding 95% confidence intervals (CIs) were used to estimate the association between the MTHFR C677T/A1298C polymorphisms and the susceptibility to the cervical lesions. The subgroup analyses were made on the following: pathological history, geographic region, ethnicity, source of controls and source of DNA for genotyping. Neither of the polymorphisms had a significant association with the susceptibility to the cervical lesions in all genetic models. Similar results were found in the subgroup analyses. No association was found between the MTHFR C677T polymorphism and the cervical lesions in the Asia or the America populations though a significant inverse association was found in the Europe population (additive model: P = 0.006, OR = 0.83, 95% CI = 0.72-0.95; CT vs. CC: P = 0.05, OR = 0.83, 95% CI = 0.69-1.00; TT vs. CC: P = 0.05, OR = 0.73, 95% CI = 0.53-1.00). Interestingly, women with the MTHFR A1298C polymorphisms had a marginally increased susceptibility to invasive cancer (ICC) when compared with no carriers but no statistically significant difference in the dominant model (P = 0.06, OR = 1.21, 95% CI = 0.99-1.49) and AC vs. AA (P = 0.09, OR = 1.21, 95% CI = 0.97-1.51). The MTHFR C677T and A1298C polymorphisms may not increase the susceptibility to cervical lesions. However, the meta-analysis reveals a negative association between the MTHFR C677T polymorphisms and the cervical lesions, especially in the European populations. The marginal association between the MTHFR A1298C polymorphisms and the susceptibility to cervical cancer requires a further study.

  9. Stratigraphic inversion of pre-stack multicomponent data; Inversion stratigraphique multicomposante avant sommation

    Energy Technology Data Exchange (ETDEWEB)

    Agullo, Y.

    2005-09-15

    This thesis present the extension of mono-component seismic pre-stack data stratigraphical inversion method to multicomponent data, with the objective of improving the determination of reservoir elastic parameters. In addiction to the PP pressure waves, the PS converted waves proved their interest for imaging under gas clouds; and their potential is highly significant for the characterization of lithologies, fluids, fractures... Nevertheless the simultaneous use ol PP and PS data remains problematic because of their different the time scales. To jointly use the information contained in PP and PS data, we propose a method in three steps first, mono-component stratigraphic inversions of PP then PS data; second, estimation of the PP to PS time conversion law; third, multicomponent stratigraphic inversion. For the second point, the estimation of the PP to PS conversion law is based on minimizing the difference between the S impedances obtained from PP and PS mono-component stratigraphic inversion. The pre-stack mono-component stratigraphic inversions was adapted to the case of multicomponent data by leaving each type of data in its own time scale in order to avoid the distortion of the seismic wavelet. The results obtained on a realistic synthetic PP-PS case show on one hand that determining PP to PS conversion law (from the mono-component inversion results) is feasible, and on the other hand that the joint inversion of PP and PS data with this conversion law improves the results compared to the mono-component inversion ones. Although this is presented within the framework of the PP and PS multi-component data, the developed methodology adapts directly to PP and SS data for example. (author)

  10. 1-D DC Resistivity Inversion Using Singular Value Decomposition and Levenberg-Marquardt’s Inversion Schemes

    OpenAIRE

    Heriyanto, Mohammad; Srigutomo, Wahyu

    2017-01-01

    Exploration of natural or energy resources requires geophysical survey to determine the subsurface structure, such as DC resistivity method. In this research, field and synthetic data were used using Schlumberger configuration. One-dimensional (1-D) DC resistivity inversion was carried out using Singular Value Decomposition (SVD) and Levenberg-Marquardt (LM) techniques to obtain layered resistivity structure. We have developed software to perform both inversion met...

  11. On polymorphism of dysprosium trichloride

    International Nuclear Information System (INIS)

    Zakiryanova, Irina D.; Khokhlov, Vladimir A.; Salyulev, Alexander B.; Korzun, Iraida V.

    2015-01-01

    For the first time, the structure of crystalline DyCl 3 over a wide temperature range from room temperature to melting point was studied by Raman spectroscopy. The phonon modes (cm -1 ) of dysprosium trichloride (monoclinic crystal lattice of AlCl 3 type, Z = 4, CN = 6) at room temperature are 257 (A 1g ), 201 (E g ), 112 (E g ), 88 (A 1g ), and 63 (E g ). The monoclinic structure of the crystalline DyCl 3 C 2h 3 symmetry was found to remain constant over the studied temperature range. No polymorphic transformation in the solid state was detected. Gravimetry, calorimetry, and mass spectrometry have been used in addition to support the conclusions made on the basis of Raman spectroscopic data.

  12. On polymorphism of dysprosium trichloride

    Energy Technology Data Exchange (ETDEWEB)

    Zakiryanova, Irina D.; Khokhlov, Vladimir A.; Salyulev, Alexander B.; Korzun, Iraida V. [RAS Ural Branch, Ekaterinburg (Russian Federation). Institute of High-Temperature Electrochemistry

    2015-07-01

    For the first time, the structure of crystalline DyCl{sub 3} over a wide temperature range from room temperature to melting point was studied by Raman spectroscopy. The phonon modes (cm{sup -1}) of dysprosium trichloride (monoclinic crystal lattice of AlCl{sub 3} type, Z = 4, CN = 6) at room temperature are 257 (A{sub 1g}), 201 (E{sub g}), 112 (E{sub g}), 88 (A{sub 1g}), and 63 (E{sub g}). The monoclinic structure of the crystalline DyCl{sub 3} C{sub 2h}{sup 3} symmetry was found to remain constant over the studied temperature range. No polymorphic transformation in the solid state was detected. Gravimetry, calorimetry, and mass spectrometry have been used in addition to support the conclusions made on the basis of Raman spectroscopic data.

  13. On the calibration process of film dosimetry: OLS inverse regression versus WLS inverse prediction

    International Nuclear Information System (INIS)

    Crop, F; Thierens, H; Rompaye, B Van; Paelinck, L; Vakaet, L; Wagter, C De

    2008-01-01

    The purpose of this study was both putting forward a statistically correct model for film calibration and the optimization of this process. A reliable calibration is needed in order to perform accurate reference dosimetry with radiographic (Gafchromic) film. Sometimes, an ordinary least squares simple linear (in the parameters) regression is applied to the dose-optical-density (OD) curve with the dose as a function of OD (inverse regression) or sometimes OD as a function of dose (inverse prediction). The application of a simple linear regression fit is an invalid method because heteroscedasticity of the data is not taken into account. This could lead to erroneous results originating from the calibration process itself and thus to a lower accuracy. In this work, we compare the ordinary least squares (OLS) inverse regression method with the correct weighted least squares (WLS) inverse prediction method to create calibration curves. We found that the OLS inverse regression method could lead to a prediction bias of up to 7.3 cGy at 300 cGy and total prediction errors of 3% or more for Gafchromic EBT film. Application of the WLS inverse prediction method resulted in a maximum prediction bias of 1.4 cGy and total prediction errors below 2% in a 0-400 cGy range. We developed a Monte-Carlo-based process to optimize calibrations, depending on the needs of the experiment. This type of thorough analysis can lead to a higher accuracy for film dosimetry

  14. High Prevalence of the BIM Deletion Polymorphism in Young Female Breast Cancer in an East Asian Country.

    Directory of Open Access Journals (Sweden)

    Ching-Hung Lin

    Full Text Available A rapid surge of female breast cancer has been observed in young women in several East Asian countries. The BIM deletion polymorphism, which confers cell resistance to apoptosis, was recently found exclusively in East Asian people with prevalence rate of 12%. We aimed to evaluate the possible role of this genetic alteration in carcinogenesis of breast cancer in East Asians.Female healthy volunteers (n = 307, patients in one consecutive stage I-III breast cancer cohort (n = 692 and one metastatic breast cancer cohort (n = 189 were evaluated. BIM wild-type and deletion alleles were separately genotyped in genomic DNAs.Both cancer cohorts consistently showed inverse associations between the BIM deletion polymorphism and patient age (≤35 y vs. 36-50 y vs. >50 y: 29% vs. 22% vs. 15%, P = 0.006 in the consecutive cohort, and 40% vs. 23% vs. 13%, P = 0.023 in the metastatic cohort. In healthy volunteers, the frequencies of the BIM deletion polymorphism were similar (13%-14% in all age groups. Further analyses indicated that the BIM deletion polymorphism was not associated with specific clinicopathologic features, but it was associated with poor overall survival (adjusted hazard ratio 1.71 in the consecutive cohort.BIM deletion polymorphism may be involved in the tumorigenesis of the early-onset breast cancer among East Asians.

  15. Facies Constrained Elastic Full Waveform Inversion

    KAUST Repository

    Zhang, Z.

    2017-05-26

    Current efforts to utilize full waveform inversion (FWI) as a tool beyond acoustic imaging applications, for example for reservoir analysis, face inherent limitations on resolution and also on the potential trade-off between elastic model parameters. Adding rock physics constraints does help to mitigate these issues. However, current approaches to add such constraints are based on averaged type rock physics regularization terms. Since the true earth model consists of different facies, averaging over those facies naturally leads to smoothed models. To overcome this, we propose a novel way to utilize facies based constraints in elastic FWI. A so-called confidence map is calculated and updated at each iteration of the inversion using both the inverted models and the prior information. The numerical example shows that the proposed method can reduce the cross-talks and also can improve the resolution of inverted elastic properties.

  16. Application of inversions to lossless image compression

    Science.gov (United States)

    Arnavut, Ziya

    1997-04-01

    Linear prediction schemes, such as that of the Joint Photographic Experts Group (JPEG), are simple and normally produces a residual sequence with lower zero-order entry. Occasionally the entropy of the prediction error becomes greater than that of the original image. Such situations frequently occur when the image data have discrete gray levels located within certain intervals. To alleviate this problem, various authors have suggested different preprocessing methods. However, the techniques reported require two passes. We extend the definition of Lehmer-type inversions (Lehmer 1950 and 1964) from permutations to multiset permutations and present a one-pass algorithm based on inversions of a multiset permutation. We obtain comparable results when we apply JPEG and even better results when we apply some other linear prediction schemes on a preprocessed image, which is treated as multiset permutation.

  17. Optical inverse-square displacement sensor

    Science.gov (United States)

    Howe, R.D.; Kychakoff, G.

    1989-09-12

    This invention comprises an optical displacement sensor that uses the inverse-square attenuation of light reflected from a diffused surface to calculate the distance from the sensor to the reflecting surface. Light emerging from an optical fiber or the like is directed onto the surface whose distance is to be measured. The intensity I of reflected light is angle dependent, but within a sufficiently small solid angle it falls off as the inverse square of the distance from the surface. At least a pair of optical detectors are mounted to detect the reflected light within the small solid angle, their ends being at different distances R and R + [Delta]R from the surface. The distance R can then be found in terms of the ratio of the intensity measurements and the separation length as given in an equation. 10 figs.

  18. Function representation with circle inversion map systems

    Science.gov (United States)

    Boreland, Bryson; Kunze, Herb

    2017-01-01

    The fractals literature develops the now well-known concept of local iterated function systems (using affine maps) with grey-level maps (LIFSM) as an approach to function representation in terms of the associated fixed point of the so-called fractal transform. While originally explored as a method to achieve signal (and 2-D image) compression, more recent work has explored various aspects of signal and image processing using this machinery. In this paper, we develop a similar framework for function representation using circle inversion map systems. Given a circle C with centre õ and radius r, inversion with respect to C transforms the point p˜ to the point p˜', such that p˜ and p˜' lie on the same radial half-line from õ and d(õ, p˜)d(õ, p˜') = r2, where d is Euclidean distance. We demonstrate the results with an example.

  19. Voxel inversion of airborne EM data

    DEFF Research Database (Denmark)

    Fiandaca, Gianluca G.; Auken, Esben; Christiansen, Anders Vest C A.V.C.

    2013-01-01

    of prior information. Inversion of geophysical data usually refers to a model space being linked to the actual observation points. For airborne surveys the spatial discretization of the model space reflects the flight lines. Often airborne surveys are carried out in areas where other ground-based...... geophysical data are available. The model space of geophysical inversions is usually referred to the positions of the measurements, and ground-based model positions do not generally coincide with the airborne model positions. Consequently, a model space based on the measuring points is not well suited...... for jointly inverting airborne and ground-based geophysical data. Furthermore, geological and groundwater models most often refer to a regular voxel grid not correlated to the geophysical model space, and incorporating the geophysical data into the geological/hydrological modelling grids is problematic. We...

  20. Inverse Faraday effect with plasmon beams

    International Nuclear Information System (INIS)

    Ali, S; Mendonca, J T

    2011-01-01

    The angular momentum conservation equation is considered for an electron gas, in the presence of Laguerre-Gaussian (LG) plasmons propagating along the z-axis. The LG plasmons carry a finite orbital angular momentum despite longitudinal nature, which can be partly transfered to the electrons. For short timescales, such that ion motion can be neglected, plasmons primarily interact with the electrons, creating an azimuthal electric field and generating an axial magnetic field. This effect can be called an inverse Faraday effect due to plasmons. Numerically, it is found that the magnitude of the magnetic field enhances with the plasmon density or with the energy of the electron plasma waves. A comparison of the magnitudes of the axial magnetic field is made for the inverse Faraday effect excited by both plasmons and transverse photons.

  1. Inverse Kinematics of Concentric Tube Steerable Needles.

    Science.gov (United States)

    Sears, Patrick; Dupont, Pierre E

    2007-01-01

    Prior papers have introduced steerable needles composed of precurved concentric tubes. The curvature and extent of these needles can be controlled by the relative rotation and translation of the individual tubes. Under certain assumptions on the geometry and design of these needles, the forward kinematics problem can be solved in closed form by means of algebraic equations. The inverse kinematics problem, however, is not as straightforward owing to the nonlinear map between relative tube displacements and needle tip configuration as well as to the multiplicity of solutions as the number of tubes increases. This paper presents a general approach to solving the inverse kinematics problem using a pseudoinverse solution together with gradients of nullspace potential functions to enforce geometric and mechanical constraints.

  2. Analog fault diagnosis by inverse problem technique

    KAUST Repository

    Ahmed, Rania F.

    2011-12-01

    A novel algorithm for detecting soft faults in linear analog circuits based on the inverse problem concept is proposed. The proposed approach utilizes optimization techniques with the aid of sensitivity analysis. The main contribution of this work is to apply the inverse problem technique to estimate the actual parameter values of the tested circuit and so, to detect and diagnose single fault in analog circuits. The validation of the algorithm is illustrated through applying it to Sallen-Key second order band pass filter and the results show that the detecting percentage efficiency was 100% and also, the maximum error percentage of estimating the parameter values is 0.7%. This technique can be applied to any other linear circuit and it also can be extended to be applied to non-linear circuits. © 2011 IEEE.

  3. Radon concentration inversions in the troposphere

    International Nuclear Information System (INIS)

    Pereira, E.B.

    1987-07-01

    Vertical concentrations of radon in the lower troposphere were obtained in Southern Brazil up to 7Km high and have shown unexpected inverted profiles. The presence of low pressure center systems southwest to the flight path suggested that inversions might have been originated by a vertical transport mechanism based on the large scale circulation of developing synoptic systems. A simple friction-driven circulation model was contructed and the transport equation was solved. (author) [pt

  4. Inverse folding of RNA pseudoknot structures

    Directory of Open Access Journals (Sweden)

    Li Linda YM

    2010-06-01

    Full Text Available Abstract Background RNA exhibits a variety of structural configurations. Here we consider a structure to be tantamount to the noncrossing Watson-Crick and G-U-base pairings (secondary structure and additional cross-serial base pairs. These interactions are called pseudoknots and are observed across the whole spectrum of RNA functionalities. In the context of studying natural RNA structures, searching for new ribozymes and designing artificial RNA, it is of interest to find RNA sequences folding into a specific structure and to analyze their induced neutral networks. Since the established inverse folding algorithms, RNAinverse, RNA-SSD as well as INFO-RNA are limited to RNA secondary structures, we present in this paper the inverse folding algorithm Inv which can deal with 3-noncrossing, canonical pseudoknot structures. Results In this paper we present the inverse folding algorithm Inv. We give a detailed analysis of Inv, including pseudocodes. We show that Inv allows to design in particular 3-noncrossing nonplanar RNA pseudoknot 3-noncrossing RNA structures-a class which is difficult to construct via dynamic programming routines. Inv is freely available at http://www.combinatorics.cn/cbpc/inv.html. Conclusions The algorithm Inv extends inverse folding capabilities to RNA pseudoknot structures. In comparison with RNAinverse it uses new ideas, for instance by considering sets of competing structures. As a result, Inv is not only able to find novel sequences even for RNA secondary structures, it does so in the context of competing structures that potentially exhibit cross-serial interactions.

  5. The solution of nitrogen inversion in amidases.

    Science.gov (United States)

    Syrén, Per-Olof

    2013-07-01

    An important mechanistic aspect of enzyme catalyzed amide bond hydrolysis is the specific orientation of the lone pair of the nitrogen of the scissile amide bond during catalysis. As discussed in the literature during the last decades, stereoelectronic effects cause the single lone pair in the formed tetrahedral intermediate to be situated in a non-productive conformation in the enzyme active site and hence nitrogen inversion or rotation is necessary. By discussing recent mechanistic findings in the literature relevant for the conformation of the lone pair of the reacting amide nitrogen atom, it will be demonstrated that nature has evolved at least two catalytic strategies to cope with the stereoelectronic constraints inherent to amide bond hydrolysis regardless of the fold or catalytic mechanism. One solution to the inversion problem is to stabilize the transition state of inversion by hydrogen bond formation; another is to introduce a concerted proton shuttle mechanism that avoids inversion and delivers a hydrogen to the lone pair. By using molecular modeling it is demonstrated that the H-bond strategy is general and can be expanded to include many amidases/proteases with important metabolic functions, including the proteasome. Some examples of the proton shuttle mechanism will also be mentioned. To complete the picture of efficient enzyme catalyzed amide bond hydrolysis, general interactions in the active site of these catalysts will be discussed. An expanded knowledge of the prerequisites of efficient amide bond hydrolysis beyond the oxyanion hole and the catalytic dyad/triad will be of importance for enzyme and drug design. © 2013 The Author Journal compilation © 2013 FEBS.

  6. Approximate Inverse Preconditioners with Adaptive Dropping

    Czech Academy of Sciences Publication Activity Database

    Kopal, J.; Rozložník, Miroslav; Tůma, Miroslav

    2015-01-01

    Roč. 84, June (2015), s. 13-20 ISSN 0965-9978 R&D Projects: GA ČR(CZ) GAP108/11/0853; GA ČR GA13-06684S Institutional support: RVO:67985807 Keywords : approximate inverse * Gram-Schmidt orthogonalization * incomplete decomposition * preconditioned conjugate gradient method * algebraic preconditioning * pivoting Subject RIV: BA - General Mathematics Impact factor: 1.673, year: 2015

  7. Robust inversion via semistochastic dimensionality reduction

    OpenAIRE

    Aravkin, Aleksandr; Friedlander, Michael P.; van Leeuwen, Tristan

    2011-01-01

    We consider a class of inverse problems where it is possible to aggregate the results of multiple experiments. This class includes problems where the forward model is the solution operator to linear ODEs or PDEs. The tremendous size of such problems motivates dimensionality reduction techniques based on randomly mixing experiments. These techniques break down, however, when robust data-fitting formulations are used, which are essential in cases of missing data, unusually large errors, and sys...

  8. Elastic versus acoustic inversion for marine surveys

    KAUST Repository

    Mora, Peter

    2018-04-24

    Full Wavefield Inversion (FWI) is a powerful and elegant approach for seismic imaging that is on the way to becoming the method of choice when processing exploration or global seismic data. In the case of processing marine survey data, one may be tempted to assume acoustic FWI is sufficient given that only pressure waves exist in the water layer. In this paper, we pose the question as to whether or not in theory – at least for a hard water bottom case – it should be possible to resolve the shear modulus or S-wave velocity in a marine setting using large offset data. We therefore conduct numerical experiments with idealized marine data calculated with the elastic wave equation. We study two cases, FWI of data due to a diffractor model, and FWI of data due to a fault model. We find that at least in idealized situation, elastic FWI of hard waterbottom data is capable of resolving between the two Lamé parameters λ and μ. Another numerical experiment with a soft waterbottom layer gives the same result. In contrast, acoustic FWI of the synthetic elastic data results in a single image of the first Lamé parameter λ which contains severe artefacts for diffraction data and noticable artefacts for layer reflection data. Based on these results, it would appear that at least, inversions of large offset marine data should be fully elastic rather than acoustic unless it has been demonstrated that for the specific case in question (offsets, model and water depth, practical issues such as soft sediment attenuation of shear waves or computational time), that an acoustic only inversion provides a reasonably good quality of image comparable to that of an elastic inversion. Further research with real data is required to determine the degree to which practical issues such as shear wave attenuation in soft sediments may affect this result.

  9. On some inverse problems in nuclear physics

    OpenAIRE

    Belashev, B. Z.; Suleymanov, M. K.

    2001-01-01

    Some inverse problems in high-energy physics, neutron diffraction and NMR spectroscopy are discussed. To solve them, the Fourier integrated transformation method and the Maximum Entropy Technique (MENT) were used. The integrated images of experimental distributions are shown to be informative when determining the space-time parameters of a particle generation zone and when analysing blurred spectra. The efficiency of the above methods was checked by comparing relevant results with the results...

  10. Geoacoustic inversion using the vector field

    Science.gov (United States)

    Crocker, Steven E.

    The main goal of this project was to study the use of the acoustic vector field, separately or in combination with the scalar field, to estimate the depth dependent geoacoustic properties of the seafloor via non-linear inversion. The study was performed in the context of the Sediment Acoustics Experiment 2004 (SAX04) conducted in the Northern Gulf of Mexico (GOM) where a small number of acoustic vector sensors were deployed in close proximity to the seafloor. A variety of acoustic waveforms were transmitted into the seafloor at normal incidence. The acoustic vector sensors were located both above and beneath the seafloor interface where they measured the acoustic pressure and the acoustic particle acceleration. Motion data provided by the buried vector sensors were affected by a suspension response that was sensitive to the mass properties of the sensor, the sediment density and sediment elasticity (e.g., shear wave speed). The suspension response for the buried vector sensors included a resonance within the analysis band of 0.4 to 2.0 kHz. The suspension resonance represented an unknown complex transfer function between the acoustic vector field in the seabed and data representing that field. Therefore, inverse methods developed for this study were required to 1) estimate dynamic properties of the sensor suspension resonance and 2) account for the associated corruption of vector field data. A method to account for the vector sensor suspense response function was integrated directly into the inversion methods such that vector channel data corruption was reduced and an estimate of the shear wave speed in the sediment was returned. Inversions of real and synthetic data sets indicated that information about sediment shear wave speed was carried by the suspension response of the buried sensors, as opposed to being contained inherently within the acoustic vector field.

  11. Differential equations inverse and direct problems

    CERN Document Server

    Favini, Angelo

    2006-01-01

    DEGENERATE FIRST ORDER IDENTIFICATION PROBLEMS IN BANACH SPACES A NONISOTHERMAL DYNAMICAL GINZBURG-LANDAU MODEL OF SUPERCONDUCTIVITY. EXISTENCE AND UNIQUENESS THEOREMSSOME GLOBAL IN TIME RESULTS FOR INTEGRODIFFERENTIAL PARABOLIC INVERSE PROBLEMSFOURTH ORDER ORDINARY DIFFERENTIAL OPERATORS WITH GENERAL WENTZELL BOUNDARY CONDITIONSTUDY OF ELLIPTIC DIFFERENTIAL EQUATIONS IN UMD SPACESDEGENERATE INTEGRODIFFERENTIAL EQUATIONS OF PARABOLIC TYPE EXPONENTIAL ATTRACTORS FOR SEMICONDUCTOR EQUATIONSCONVERGENCE TO STATIONARY STATES OF SOLUTIONS TO THE SEMILINEAR EQUATION OF VISCOELASTICITY ASYMPTOTIC BEHA

  12. Full-waveform inversion: Filling the gaps

    KAUST Repository

    Beydoun, Wafik B.

    2015-09-01

    After receiving an outstanding response to its inaugural workshop in 2013, SEG once again achieved great success with its 2015 SEG Middle East Workshop, “Full-waveform inversion: Filling the gaps,” which took place 30 March–1 April 2015 in Abu Dhabi, UAE. The workshop was organized by SEG, and its partner sponsors were Saudi Aramco (gold sponsor), ExxonMobil, and CGG. Read More: http://library.seg.org/doi/10.1190/tle34091106.1

  13. Inverse Bremsstrahlung in Astrophysical Plasmas: The Absorption ...

    Indian Academy of Sciences (India)

    (λ, T ; Ne,Ni) = k q.c. i.b.. (λ, T ; Ne,Ni) · Gi.b.(λ, T ),. (2) where Gi.b.(λ, T ) is the sought Gaunt factor. The determination of such averaged. Gaunt factor as a function of λ and T was the object of investigation in majority of the previous papers devoted to the inverse Bremsstrahlung process. This is illustrated in Figure 1, where ...

  14. Inverse Scattering in a Multipath Environment

    Directory of Open Access Journals (Sweden)

    A. Cuccaro

    2016-09-01

    Full Text Available In this contribution an inverse scattering problem is ad- dressed in a multipath environment. In particular, multipath is created by known ”extra” point-like scatterers (passive elements expressely deployed between the scene under in- vestigation and the source/measurement domains. Through a back-projection imaging scheme, the role of the passive elements on the achievable performance is shown and com- pared to the free-space case.

  15. Classical geometry Euclidean, transformational, inversive, and projective

    CERN Document Server

    Leonard, I E; Liu, A C F; Tokarsky, G W

    2014-01-01

    Features the classical themes of geometry with plentiful applications in mathematics, education, engineering, and science Accessible and reader-friendly, Classical Geometry: Euclidean, Transformational, Inversive, and Projective introduces readers to a valuable discipline that is crucial to understanding bothspatial relationships and logical reasoning. Focusing on the development of geometric intuitionwhile avoiding the axiomatic method, a problem solving approach is encouraged throughout. The book is strategically divided into three sections: Part One focuses on Euclidean geometry, which p

  16. Metric entropy in linear inverse scattering

    Directory of Open Access Journals (Sweden)

    M. A. Maisto

    2016-09-01

    Full Text Available The role of multiple views and/or multiple frequencies on the achievable performance in linear inverse scattering problems is addressed. To this end, the impact of views and frequencies on the Kolmogorov entropy measure is studied. This way the metric information that can be conveyed back from data to the unknown can be estimated. For the sake of simplicity, the study deals with strip scatterers and the cases of discrete angles of incidence and/or frequencies.

  17. Bayesian Inversion of Seabed Scattering Data

    Science.gov (United States)

    2014-09-30

    using global optimization and Markov-chain Monte Carlo ( MCMC ) sampling algorithms. One of the goals of this work is to carry out inversions trans...is based on formulating the posterior probability density (PPD) of the model parameters of interest, which combines both data and prior information... posterior parameter uncertainty distributions, which quantify the effective data information content. In particular, scattering/geoacoustic parameter

  18. Factorized Approximate Inverses With Adaptive Dropping

    Czech Academy of Sciences Publication Activity Database

    Kopal, Jiří; Rozložník, Miroslav; Tůma, Miroslav

    2016-01-01

    Roč. 38, č. 3 (2016), A1807-A1820 ISSN 1064-8275 R&D Projects: GA ČR GA13-06684S Grant - others:GA MŠk(CZ) LL1202 Institutional support: RVO:67985807 Keywords : approximate inverses * incomplete factorization * Gram–Schmidt orthogonalization * preconditioned iterative methods Subject RIV: BA - General Mathematics Impact factor: 2.195, year: 2016

  19. 2La chromosomal inversion enhances thermal tolerance of Anopheles gambiae larvae

    Directory of Open Access Journals (Sweden)

    Costantini Carlo

    2009-07-01

    Full Text Available Abstract Background The mosquito Anopheles gambiae is broadly distributed throughout sub-Saharan Africa and this contributes to making it the most efficient vector of malaria on the continent. The pervasiveness of this species is hypothesized to originate in local adaptations facilitated by inversion polymorphisms. One inversion, named 2La, is strongly associated with aridity clines in West and Central Africa: while 2La is fixed in arid savannas, the 2L+a arrangement is predominantly found in the rainforest. Ability to survive high temperature exposure is an essential component of aridity tolerance, particularly in immature stages that are restricted to shallow puddles. Toward deciphering the role of the 2La inversion in local adaptation, the present investigation focused on variation in larval and pupal thermo-tolerance in two populations dissimilar solely in 2La arrangement. Methods A laboratory colony of A. gambiae that is polymorphic for 2La but standard for all other known inversions was used to create 2 homokaryotypic populations (2L+a and 2La. The survival of 4th instar larvae and pupae from both populations was then tested following exposure to thermal stress with and without prior heat hardening. Results Larvae responded identically to a 40°C heat stress, with about 50% of larvae dying after 1.5–2 h and few larvae surviving a 3 h stress. When heat hardened prior to the thermal stress, thermo-tolerance of both larval populations increased, with 2La 24 h survival significantly exceeding that of 2L+a. Pupae were generally more thermo-tolerant than larvae, although 2La pupae were less so than 2L+a. Heat hardening had no positive effect on pupal thermo-tolerance. Conclusion The increased thermo-tolerance observed in 2La larvae following heat hardening suggests higher responsiveness (i.e., thermal sensitivity of the inverted karyotype. By responding more drastically to the heat shock, 2La larvae are better equipped to resist the

  20. Relationship between human paraoxonase-1 activity and PON1 polymorphisms in Mexican workers exposed to organophosphate pesticides.

    Science.gov (United States)

    López-Flores, I; Lacasaña, M; Blanco-Muñoz, J; Aguilar-Garduño, C; Sanchez-Villegas, P; Pérez-Méndez, O A; Gamboa-Avila, R

    2009-07-24

    Paraoxonase-1 (PON1) is a serum enzyme which catalyzes the hydrolysis of organophosphate pesticides. In this study we conducted a cross-sectional study and reported on the distribution of three common genetic polymorphisms of the PON1 gene in a population of floriculture workers from Mexico as well as the association between those polymorphisms and other predictors with serum PON1 activity on paraoxon, diazoxon and phenylacetate. The genotype frequencies at position PON1(55) were 89% (LL), 10% (LM) and 0.6% (MM), at position PON1(192) they were 16% (QQ), 47% (QR) and 37% (RR), and 26% (TT), 42% (TC) and 32% (CC) at position PON1(-108). Thus, the frequencies of alleles L, Q and T were 0.94, 0.40 and 0.47, respectively. The PON1(55) polymorphism had no significant effect on serum PON1 activity on any substrate. We found a significant association between the PON1(192) polymorphism and PON1 activity towards paraoxon and diazoxon, which increased in genotypes as follows: 192RR>192QR>192QQ for paraoxonase activity and, inversely, 192QQ>192QR>192RR for diazoxonase activity. The PON1(-108) polymorphism also had a significant effect on PON1 activity level towards paraoxon in the following order among the genotype groups: -108CC>-108TC>-108TT. Serum PON1 activity towards diazoxon was not associated with the PON1(-108) polymorphism but it was influenced by the intensity exposure to pesticides at the floriculture industry and the years of the occupational exposure to pesticides. No polymorphism significantly influenced serum PON1 activity on phenylacetate.

  1. An inverse approach for elucidating dendritic function

    Directory of Open Access Journals (Sweden)

    Benjamin Torben-Nielsen

    2010-09-01

    Full Text Available We outline an inverse approach for investigating dendritic function-structure relationships by optimizing dendritic trees for a-priori chosen computational functions. The inverse approach can be applied in two different ways. First, we can use it as a `hypothesis generator' in which we optimize dendrites for a function of general interest. The optimization yields an artificial dendrite that is subsequently compared to real neurons. This comparison potentially allows us to propose hypotheses about the function of real neurons. In this way, we investigated dendrites that optimally perform input-order detection. Second, we can use it as a `function confirmation' by optimizing dendrites for functions hypothesized to be performed by classes of neurons. If the optimized, artificial, dendrites resemble the dendrites of real neurons the artificial dendrites corroborate the hypothesized function of the real neuron. Moreover, properties of the artificial dendrites can lead to predictions about yet unmeasured properties. In this way, we investigated wide-field motion integration performed by the VS cells of the fly visual system. In outlining the inverse approach and two applications, we also elaborate on the nature of dendritic function. We furthermore discuss the role of optimality in assigning functions to dendrites and point out interesting future directions.

  2. Silicon MIS/inversion-layer solar cells

    Science.gov (United States)

    Olsen, L. C.

    1982-10-01

    Silicon Metal-Insulator-Semiconductor/Inversion-Layer (MIS-IL) solar cells were investigated as an approach to low cost terrestrial photovoltaics. Considerable progress was made concerning the development of procedures for SiO deposition for inversion-layer formation, the characterization of the fixed charge in deposited SiO layers, surface state density at the Si-SiO interface, fabrication and characterization of MIS-IL solar cells. Improvements were also made in the theory of MIS-IL solar cells, and utilized to calculate cell performance for a range of insulator charge and base resistivities. Inversion layer formation was studied in several ways. MOS devices was analyzed to determine the magnitude of the net positive charge, Q/sub POS/, vensus surface potential, Psi/sub S/. In situ sheet resistance measurements was made to determine the charge distribution within the deposited SiO layer. Finally, estimates of Q/sub POS/ obtained by comparing experimental results for MIS-IL cells and theory are compared with values of Q/sub POS/ determined for MOS structures fabricated simultaneously with the solar cells. Cell fabrication procedures emphasized low temperature processing.

  3. Solar structure inversion with LOWL data

    Science.gov (United States)

    Basu, Sarbani; Christensen-Dalsgaard, Joergen; Schou, Jesper; Thompson, Michael J.; Tomczyk, Steven

    1995-01-01

    Inversion results for the radial hydrostatic structure of the Sun, using six months of oscillation data obtained with the LOWL instrument, are presented. Both low and intermediate degree modes are used, thus avoiding the systematic errors that might have occurred in previous inversions by merging more than one data set. Using modes of between 0 deg and 90 deg and frequencies of between 1.5 mHz and 3.5 mHz, the variations with depth of the speed of sound, the density and the pressure were inferred for radii of between 0.05 and 0.85 stellar radius. It was found that in this region, the sound speed was within 0.15% of that of a model constructed using an equation of state that incorporated helium diffusion. The density difference between the Sun and the model was less than 0.8%. Given the small error bars on the inversion results, these differences are considered as being significant.

  4. TOPICAL REVIEW: Inverse problems in elasticity

    Science.gov (United States)

    Bonnet, Marc; Constantinescu, Andrei

    2005-04-01

    This review is devoted to some inverse problems arising in the context of linear elasticity, namely the identification of distributions of elastic moduli, model parameters or buried objects such as cracks. These inverse problems are considered mainly for three-dimensional elastic media under equilibrium or dynamical conditions, and also for thin elastic plates. The main goal is to overview some recent results, in an effort to bridge the gap between studies of a mathematical nature and problems defined from engineering practice. Accordingly, emphasis is given to formulations and solution techniques which are well suited to general-purpose numerical methods for solving elasticity problems on complex configurations, in particular the finite element method and the boundary element method. An underlying thread of the discussion is the fact that useful tools for the formulation, analysis and solution of inverse problems arising in linear elasticity, namely the reciprocity gap and the error in constitutive equation, stem from variational and virtual work principles, i.e., fundamental principles governing the mechanics of deformable solid continua. In addition, the virtual work principle is shown to be instrumental for establishing computationally efficient formulae for parameter or geometrical sensitivity, based on the adjoint solution method. Sensitivity formulae are presented for various situations, especially in connection with contact mechanics, cavity and crack shape perturbations, thus enriching the already extensive known repertoire of such results. Finally, the concept of topological derivative and its implementation for the identification of cavities or inclusions are expounded.

  5. Are Pericentric Inversions Reorganizing Wedge Shell Genomes?

    Directory of Open Access Journals (Sweden)

    Daniel García-Souto

    2017-12-01

    Full Text Available Wedge shells belonging to the Donacidae family are the dominant bivalves in exposed beaches in almost all areas of the world. Typically, two or more sympatric species of wedge shells differentially occupy intertidal, sublittoral, and offshore coastal waters in any given locality. A molecular cytogenetic analysis of two sympatric and closely related wedge shell species, Donax trunculus and Donax vittatus, was performed. Results showed that the karyotypes of these two species were both strikingly different and closely alike; whilst metacentric and submetacentric chromosome pairs were the main components of the karyotype of D. trunculus, 10–11 of the 19 chromosome pairs were telocentric in D. vittatus, most likely as a result of different pericentric inversions. GC-rich heterochromatic bands were present in both species. Furthermore, they showed coincidental 45S ribosomal RNA (rRNA, 5S rRNA and H3 histone gene clusters at conserved chromosomal locations, although D. trunculus had an additional 45S rDNA cluster. Intraspecific pericentric inversions were also detected in both D. trunculus and D. vittatus. The close genetic similarity of these two species together with the high degree of conservation of the 45S rRNA, 5S rRNA and H3 histone gene clusters, and GC-rich heterochromatic bands indicate that pericentric inversions contribute to the karyotype divergence in wedge shells.

  6. Elastic reflection waveform inversion with variable density

    KAUST Repository

    Li, Yuanyuan

    2017-08-17

    Elastic full waveform inversion (FWI) provides a better description of the subsurface than those given by the acoustic assumption. However it suffers from a more serious cycle skipping problem compared with the latter. Reflection waveform inversion (RWI) provides a method to build a good background model, which can serve as an initial model for elastic FWI. Therefore, we introduce the concept of RWI for elastic media, and propose elastic RWI with variable density. We apply Born modeling to generate the synthetic reflection data by using optimized perturbations of P- and S-wave velocities and density. The inversion for the perturbations in P- and S-wave velocities and density is similar to elastic least-squares reverse time migration (LSRTM). An incorrect initial model will lead to some misfits at the far offsets of reflections; thus, can be utilized to update the background velocity. We optimize the perturbation and background models in a nested approach. Numerical tests on the Marmousi model demonstrate that our method is able to build reasonably good background models for elastic FWI with absence of low frequencies, and it can deal with the variable density, which is needed in real cases.

  7. Computationally efficient Bayesian inference for inverse problems.

    Energy Technology Data Exchange (ETDEWEB)

    Marzouk, Youssef M.; Najm, Habib N.; Rahn, Larry A.

    2007-10-01

    Bayesian statistics provides a foundation for inference from noisy and incomplete data, a natural mechanism for regularization in the form of prior information, and a quantitative assessment of uncertainty in the inferred results. Inverse problems - representing indirect estimation of model parameters, inputs, or structural components - can be fruitfully cast in this framework. Complex and computationally intensive forward models arising in physical applications, however, can render a Bayesian approach prohibitive. This difficulty is compounded by high-dimensional model spaces, as when the unknown is a spatiotemporal field. We present new algorithmic developments for Bayesian inference in this context, showing strong connections with the forward propagation of uncertainty. In particular, we introduce a stochastic spectral formulation that dramatically accelerates the Bayesian solution of inverse problems via rapid evaluation of a surrogate posterior. We also explore dimensionality reduction for the inference of spatiotemporal fields, using truncated spectral representations of Gaussian process priors. These new approaches are demonstrated on scalar transport problems arising in contaminant source inversion and in the inference of inhomogeneous material or transport properties. We also present a Bayesian framework for parameter estimation in stochastic models, where intrinsic stochasticity may be intermingled with observational noise. Evaluation of a likelihood function may not be analytically tractable in these cases, and thus several alternative Markov chain Monte Carlo (MCMC) schemes, operating on the product space of the observations and the parameters, are introduced.

  8. Constraining inverse curvature gravity with supernovae

    Energy Technology Data Exchange (ETDEWEB)

    Mena, Olga; Santiago, Jose; /Fermilab; Weller, Jochen; /University Coll., London /Fermilab

    2005-10-01

    We show that the current accelerated expansion of the Universe can be explained without resorting to dark energy. Models of generalized modified gravity, with inverse powers of the curvature can have late time accelerating attractors without conflicting with solar system experiments. We have solved the Friedman equations for the full dynamical range of the evolution of the Universe. This allows us to perform a detailed analysis of Supernovae data in the context of such models that results in an excellent fit. Hence, inverse curvature gravity models represent an example of phenomenologically viable models in which the current acceleration of the Universe is driven by curvature instead of dark energy. If we further include constraints on the current expansion rate of the Universe from the Hubble Space Telescope and on the age of the Universe from globular clusters, we obtain that the matter content of the Universe is 0.07 {le} {omega}{sub m} {le} 0.21 (95% Confidence). Hence the inverse curvature gravity models considered can not explain the dynamics of the Universe just with a baryonic matter component.

  9. Association of interleukin-1 beta (-511C/T) polymorphisms with osteoporosis in postmenopausal women

    International Nuclear Information System (INIS)

    Tai-Hung Chao; Hsing-Ning Yu; Chi-Chuan Huang; Wen-Shen Liu; Ya-Wen Tsai; Wen-Tung Wu

    2010-01-01

    Osteoporosis is a common disease of the elderly, in which genetic and clinical factors contribute to the disease phenotype. Since the production of interleukin-1 (IL-1) has been implicated in the bone mass and skeletal disorders, we investigated whether IL-1 system gene polymorphisms are associated with the pathogenesis of osteoporosis in postmenopausal Taiwanese women.Osteoporosis is diagnosed by dual-energy x-ray absorptiometry, which measures bone mineral density (BMD) at multiple skeletal sites. We studied the IL-1a (-889C/T), IL-1 (-511C/T) and the 86 base pair variable number tandem repeat (VNTR) in intron 2 of the IL-1 receptor antagonist (IL-1ra) gene in 117 postmenopausal women with osteoporosis and 135 control subjects without a history of symptomatic osteoporosis. These gene polymorphisms were analyzed by polymerase chain reaction and restriction fragment length polymerase. Blood sugar and other risk factors were also determined.The frequencies of IL-1 (-511C/T) genotypes (P=.022, odds ratio=1.972) and alleles (P=.02, odds ratio=2.909) showed a statistically significant difference between the two groups. However, we did not find any statistically significant difference in IL-1 and IL-1ra polymorphisms (P>.05). We also observed a positive relationship between osteoporosis and cholesterol and a weak inverse relationship between blood sugar and osteoporosis in postmenopausal women.These experimental results suggest that the pathogenesis of osteoporosis is associated with IL-1 (-511C/T) polymorphism in postmenopausal women. This polymorphism is an independent risk factor for osteoporosis (Author).

  10. Polymorphism Sequence - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us JSNP Polymorphism Sequence Data detail Data name Polymorphism Sequence DOI 10.18908/lsdba.nb...dc00114-001 Description of data contents Information on polymorphisms (SNPs and insertions/deletions) and th...se Name database name JSNP_SNP: single nucleotide polymorphism JSNP_InsDel_IND: insertion/deletion JSNP_InsD...ved allele observed 3' Flanking Sequence 3' flanking sequence Offset in Flanking Sequence position of the polymorphism...uence Accession No. accession No. of the sequence for polymorphism screening Offset in Record position of the polymorphism

  11. Approximate inverse preconditioning of iterative methods for nonsymmetric linear systems

    Energy Technology Data Exchange (ETDEWEB)

    Benzi, M. [Universita di Bologna (Italy); Tuma, M. [Inst. of Computer Sciences, Prague (Czech Republic)

    1996-12-31

    A method for computing an incomplete factorization of the inverse of a nonsymmetric matrix A is presented. The resulting factorized sparse approximate inverse is used as a preconditioner in the iterative solution of Ax = b by Krylov subspace methods.

  12. INVERSE ELECTRON TRANSFER IN PEROXYOXALATE CHEMIEXCITATION USING EASILY REDUCIBLE ACTIVATORS

    NARCIS (Netherlands)

    Bartoloni, Fernando Heering; Monteiro Leite Ciscato, Luiz Francisco; Augusto, Felipe Alberto; Baader, Wilhelm Josef

    2010-01-01

    INVERSE ELECTRON TRANSFER IN PEROXYOXALATE CHEMIEXCITATION USING EASILY REDUCIBLE ACTIVATORS. Chemiluminescence properties of the peroxyoxalate reaction in the presence of activators bearing electron withdrawing substituents were studied, to evaluate the possible occurrence of an inverse electron

  13. Probabilistic inversion in priority setting of emerging zoonoses.

    NARCIS (Netherlands)

    Kurowicka, D.; Bucura, C.; Cooke, R.; Havelaar, A.H.

    2010-01-01

    This article presents methodology of applying probabilistic inversion in combination with expert judgment in priority setting problem. Experts rank scenarios according to severity. A linear multi-criteria analysis model underlying the expert preferences is posited. Using probabilistic inversion, a

  14. Inverse problem of Ocean Acoustic Tomography (OAT) - A numerical experiment

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, T.V.R.; Somayajulu, Y.K.; Mahadevan, R.; Murty, C.S.

    Acoustic model simulation experiments related to the forward and inverse aspects of ocean tomography have been taken up with a view to estimate the vertical sound speed field by inverting the travel time data. Two methods of inversion have been...

  15. A-optimal encoding weights for nonlinear inverse problems, with application to the Helmholtz inverse problem

    Science.gov (United States)

    Crestel, Benjamin; Alexanderian, Alen; Stadler, Georg; Ghattas, Omar

    2017-07-01

    The computational cost of solving an inverse problem governed by PDEs, using multiple experiments, increases linearly with the number of experiments. A recently proposed method to decrease this cost uses only a small number of random linear combinations of all experiments for solving the inverse problem. This approach applies to inverse problems where the PDE solution depends linearly on the right-hand side function that models the experiment. As this method is stochastic in essence, the quality of the obtained reconstructions can vary, in particular when only a small number of combinations are used. We develop a Bayesian formulation for the definition and computation of encoding weights that lead to a parameter reconstruction with the least uncertainty. We call these weights A-optimal encoding weights. Our framework applies to inverse problems where the governing PDE is nonlinear with respect to the inversion parameter field. We formulate the problem in infinite dimensions and follow the optimize-then-discretize approach, devoting special attention to the discretization and the choice of numerical methods in order to achieve a computational cost that is independent of the parameter discretization. We elaborate our method for a Helmholtz inverse problem, and derive the adjoint-based expressions for the gradient of the objective function of the optimization problem for finding the A-optimal encoding weights. The proposed method is potentially attractive for real-time monitoring applications, where one can invest the effort to compute optimal weights offline, to later solve an inverse problem repeatedly, over time, at a fraction of the initial cost.

  16. Inverse problems in classical and quantum physics

    International Nuclear Information System (INIS)

    Almasy, A.A.

    2007-01-01

    The subject of this thesis is in the area of Applied Mathematics known as Inverse Problems. Inverse problems are those where a set of measured data is analysed in order to get as much information as possible on a model which is assumed to represent a system in the real world. We study two inverse problems in the fields of classical and quantum physics: QCD condensates from tau-decay data and the inverse conductivity problem. Despite a concentrated effort by physicists extending over many years, an understanding of QCD from first principles continues to be elusive. Fortunately, data continues to appear which provide a rather direct probe of the inner workings of the strong interactions. We use a functional method which allows us to extract within rather general assumptions phenomenological parameters of QCD (the condensates) from a comparison of the time-like experimental data with asymptotic space-like results from theory. The price to be paid for the generality of assumptions is relatively large errors in the values of the extracted parameters. Although we do not claim that our method is superior to other approaches, we hope that our results lend additional confidence to the numerical results obtained with the help of methods based on QCD sum rules. EIT is a technology developed to image the electrical conductivity distribution of a conductive medium. The technique works by performing simultaneous measurements of direct or alternating electric currents and voltages on the boundary of an object. These are the data used by an image reconstruction algorithm to determine the electrical conductivity distribution within the object. In this thesis, two approaches of EIT image reconstruction are proposed. The first is based on reformulating the inverse problem in terms of integral equations. This method uses only a single set of measurements for the reconstruction. The second approach is an algorithm based on linearisation which uses more then one set of measurements. A

  17. Inverse problems in classical and quantum physics

    Energy Technology Data Exchange (ETDEWEB)

    Almasy, A.A.

    2007-06-29

    The subject of this thesis is in the area of Applied Mathematics known as Inverse Problems. Inverse problems are those where a set of measured data is analysed in order to get as much information as possible on a model which is assumed to represent a system in the real world. We study two inverse problems in the fields of classical and quantum physics: QCD condensates from tau-decay data and the inverse conductivity problem. Despite a concentrated effort by physicists extending over many years, an understanding of QCD from first principles continues to be elusive. Fortunately, data continues to appear which provide a rather direct probe of the inner workings of the strong interactions. We use a functional method which allows us to extract within rather general assumptions phenomenological parameters of QCD (the condensates) from a comparison of the time-like experimental data with asymptotic space-like results from theory. The price to be paid for the generality of assumptions is relatively large errors in the values of the extracted parameters. Although we do not claim that our method is superior to other approaches, we hope that our results lend additional confidence to the numerical results obtained with the help of methods based on QCD sum rules. EIT is a technology developed to image the electrical conductivity distribution of a conductive medium. The technique works by performing simultaneous measurements of direct or alternating electric currents and voltages on the boundary of an object. These are the data used by an image reconstruction algorithm to determine the electrical conductivity distribution within the object. In this thesis, two approaches of EIT image reconstruction are proposed. The first is based on reformulating the inverse problem in terms of integral equations. This method uses only a single set of measurements for the reconstruction. The second approach is an algorithm based on linearisation which uses more then one set of measurements. A

  18. An Inverse Thellier Method of Paleointensity Determination

    Science.gov (United States)

    Dunlop, D. J.; Yu, Y.

    2002-12-01

    Inverse thermoremanent magnetization (ITRM) is produced when magnetite warms from below the Verwey transition at 120 K to room temperature in a magnetic field H. ITRM could be acquired by magnetite-bearing meteorites if their interiors remain below 120 K at the time of impact and they subsequently warm in the Earth's field. ITRM might possibly be distinguished from genuine extraterrestrial remanence by the recorded field intensity H, since the present field is well mapped over the Earth. To test this idea, we have invented an "inverse Thellier" paleointensity method using double cooling-warming steps below 300 K in place of double heating-cooling steps above 300 K. We used as the "NRM" a total ITRM produced by warming natural samples and sized synthetic magnetites from 30 K to 300 K. The field H was either 0.1 or 0.2 mT (in some experiments, total ITRM was produced in one of these fields and partial ITRMs in the other). The first cooling-warming step, usually to 200 K, was in zero field. Remanence measured after this step gives the loss in NRM. The second cooling-warming step was in field H. The difference in remanence between the second and first steps gives the partial ITRM gained. NRM losses and partial ITRM gains in further steps to 150, 130, 120, 110, 100 and 90 K, generate an "inverse Arai plot", whose slope is the ratio between the ITRM and partial ITRM fields. We tested magnetites with sizes of 0.065, 0.2, 0.6, 1.0, 1.1, 3, 6, 9, 17 and 135 micrometers, both unannealed and annealed, and two samples of the Tudor Gabbro containing elongated single-domain magnetite. The results are discouraging. Despite a variety of shapes of cooling-warming cycles, most inverse Arai plots have the convex-down form typical of Arai plots for TRM in multidomain grains. More ITRM is lost in early zero-field steps than is regained as partial ITRM in in-field steps, even for grains that are single-domain or nearly so. The only quasi-linear plots were for the two gabbros, which also

  19. Inverse scattering problem in turbulent magnetic fluctuations

    Directory of Open Access Journals (Sweden)

    R. A. Treumann

    2016-08-01

    Full Text Available We apply a particular form of the inverse scattering theory to turbulent magnetic fluctuations in a plasma. In the present note we develop the theory, formulate the magnetic fluctuation problem in terms of its electrodynamic turbulent response function, and reduce it to the solution of a special form of the famous Gelfand–Levitan–Marchenko equation of quantum mechanical scattering theory. The last of these applies to transmission and reflection in an active medium. The theory of turbulent magnetic fluctuations does not refer to such quantities. It requires a somewhat different formulation. We reduce the theory to the measurement of the low-frequency electromagnetic fluctuation spectrum, which is not the turbulent spectral energy density. The inverse theory in this form enables obtaining information about the turbulent response function of the medium. The dynamic causes of the electromagnetic fluctuations are implicit to it. Thus, it is of vital interest in low-frequency magnetic turbulence. The theory is developed until presentation of the equations in applicable form to observations of turbulent electromagnetic fluctuations as input from measurements. Solution of the final integral equation should be done by standard numerical methods based on iteration. We point to the possibility of treating power law fluctuation spectra as an example. Formulation of the problem to include observations of spectral power densities in turbulence is not attempted. This leads to severe mathematical problems and requires a reformulation of inverse scattering theory. One particular aspect of the present inverse theory of turbulent fluctuations is that its structure naturally leads to spatial information which is obtained from the temporal information that is inherent to the observation of time series. The Taylor assumption is not needed here. This is a consequence of Maxwell's equations, which couple space and time evolution. The inversion procedure takes

  20. Review of ankle inversion sprain simulators in the biomechanics laboratory

    OpenAIRE

    Ha, Sophia Chui-Wai; Fong, Daniel Tik-Pui; Chan, Kai-Ming

    2015-01-01

    Ankle inversion ligamentous sprain is one of the most common sports injuries. The most direct way is to investigate real injury incidents, but it is unethical and impossible to replicate on test participants. Simulators including tilt platforms, trapdoors, and fulcrum devices were designed to mimic ankle inversion movements in laboratories. Inversion angle was the only element considered in early designs; however, an ankle sprain is composed of inversion and plantarflexion in clinical observa...

  1. Identification of amplified fragment length polymorphism (AFLP ...

    African Journals Online (AJOL)

    Identification of amplified fragment length polymorphism (AFLP) fragments linked to soybean mosaic virus resistance gene in Glycine soja and conversion to a sequence characterized amplified regions (SCAR) marker for rapid selection.

  2. Polymorphous light eruption - some interesting aspects

    International Nuclear Information System (INIS)

    Corrales-Padilla, H.; Dominguez-Soto, L.; Hojyo-Tomoka, M.T.; Londono, F.; Vargas-Ocampo, F.

    1979-01-01

    A study of polymorphous light eruption (PLE) is Latin America is reported. The clinical lesions, the course, histopathology, differential diagnosis, pathogenesis, treatment and systemic photoprotection are discussed. Treatment with ultraviolet radiation is included. (C.F.)

  3. Complementary DNA-amplified fragment length polymorphism ...

    African Journals Online (AJOL)

    Complementary DNA-amplified fragment length polymorphism (AFLP-cDNA) analysis of differential gene expression from the xerophyte Ammopiptanthus mongolicus in response to cold, drought and cold together with drought.

  4. (ISSR) and randomly amplified polymorphic DNA

    African Journals Online (AJOL)

    ajl yemi

    2011-12-19

    Dec 19, 2011 ... The phylogenic relationship within four species of Polygonum (including Polygonum hyrcanicum Rech. f. (three samples), Polygonum persicaria Boiss & Bushe Boiss, Polygonum avicular L., and Polygonum hydropiper L. subsp. Hydropiper) was investigated by randomly amplified polymorphic DNA ...

  5. Estrogens, Genetic Polymorphisms and Breast Cancer Risk

    National Research Council Canada - National Science Library

    Okobia, Michael N; Bunker, Clareann H; Kuller, Lewis; Ferrell, Robert E; Anyanwu, Stanley N; Ezeome, Emmanuel R; Uche, Emmanuel E

    2004-01-01

    This study is aimed at evaluating the role of polymorphisms in the genes encoding enzymes responsible for the biosynthesis and degradation of estrogens and its metabolites in susceptibility to breast...

  6. DNA polymorphism analysis of Xanthomonas campestris pv ...

    African Journals Online (AJOL)

    strand conformation polymorphism (SSCP) techniques using M13 and 16S rRNA primers, respectively, for genotyping of the phytopathogenic bacterium Xanthomonas campestris pv. campestris was studied. RAPD provided a simple, rapid, and ...

  7. Single feature polymorphism discovery in rice.

    Directory of Open Access Journals (Sweden)

    Rajesh Kumar

    Full Text Available The discovery of nucleotide diversity captured as single feature polymorphism (SFP by using the expression array is a high-throughput and effective method in detecting genome-wide polymorphism. The efficacy of such method was tested in rice, and the results presented in the paper indicate high sensitivity in predicting SFP. The sensitivity of polymorphism detection was further demonstrated by the fact that no biasness was observed in detecting SFP with either single or multiple nucleotide polymorphisms. The high density SFP data that can be generated quite effectively by the current method has promise for high resolution genetic mapping studies, as physical location of features are well-defined on rice genome.

  8. Large maneuverable flight control using neural networks dynamic inversion

    Science.gov (United States)

    Yang, Enquan; Gao, Jinyuan

    2003-09-01

    An adaptive dynamic-inversion-based neural network is applied to aircraft large maneuverable flight control. Neural network is used to cancel the inversion error which may arise from imperfect modeling or approximate inversion. Simulation results for an aircraft model are presented to illustrate the performance of the flight control system.

  9. n-Colour even self-inverse compositions

    Indian Academy of Sciences (India)

    An -colour even self-inverse composition is defined as an -colour self-inverse composition with even parts. In this paper, we get generating functions, explicit formulas and recurrence formulas for -colour even self-inverse compositions. One new binomial identity is also obtained.

  10. Inversion structures in Northern Sotho | Zerbian | Southern African ...

    African Journals Online (AJOL)

    Inversion structures, in which the logical subject appears in postverbal position, are a wide-spread phenomenon among Bantu languages. The paper presents an overview of inversion structures in Bantu languages and describes in detail the inversion constructions in the Southern Bantu language Northern Sotho. It argues ...

  11. UGT polymorphisms and lamotrigine clearance during pregnancy

    DEFF Research Database (Denmark)

    Petrenaite, Vaiva; Öhman, Inger; Ekström, Lena

    2018-01-01

    OBJECTIVE: To evaluate the impact of maternal UGT1A4 and UGT2B7 genetic polymorphisms and sex of foetus on gestation-induced changes in lamotrigine (LTG) clearance during pregnancy and post-partum (PP). METHODS: Single nucleotide polymorphisms UGT1A4 142T > G, L48V (*3), UGT1A4 70C > A, P24T (*2)...

  12. Polymorphism in Bacterial Flagella Suspensions

    Science.gov (United States)

    Schwenger, Walter J.

    Bacterial flagella are a type of biological polymer studied for its role in bacterial motility and the polymorphic transitions undertaken to facilitate the run and tumble behavior. The naturally rigid, helical shape of flagella gives rise to novel colloidal dynamics and material properties. This thesis studies methods in which the shape of bacterial flagella can be controlled using in vitro methods and the changes the shape of the flagella have on both single particle dynamics and bulk material properties. We observe individual flagellum in both the dilute and semidilute regimes to observe the effects of solvent condition on the shape of the filament as well as the effect the filament morphology has on reptation through a network of flagella. In addition, we present rheological measurements showing how the shape of filaments effects the bulk material properties of flagellar suspensions. We find that the individual particle dynamics in suspensions of flagella can vary with geometry from needing to reptate linearly via rotation for helical filaments to the prevention of long range diffusion for block copolymer filaments. Similarly, for bulk material properties of flagella suspensions, helical geometries show a dramatic enhancement in elasticity over straight filaments while block copolymers form an elastic gel without the aid of crosslinking agents.

  13. Inverse planning for x-ray rotation therapy: a general solution of the inverse problem

    International Nuclear Information System (INIS)

    Oelfke, U.; Bortfeld, T.

    1999-01-01

    Rotation therapy with photons is currently under investigation for the delivery of intensity modulated radiotherapy (IMRT). An analytical approach for inverse treatment planning of this radiotherapy technique is described. The inverse problem for the delivery of arbitrary 2D dose profiles is first formulated and then solved analytically. In contrast to previously applied strategies for solving the inverse problem, it is shown that the most general solution for the fluence profiles consists of two independent solutions of different parity. A first analytical expression for both fluence profiles is derived. The mathematical derivation includes two different strategies, an elementary expansion of fluence and dose into polynomials and a more practical approach in terms of Fourier transforms. The obtained results are discussed in the context of previous work on this problem. (author)

  14. Experimental and inverse technics, data processing; Techniques experimentales, techniques inverses, traitement des donnees

    Energy Technology Data Exchange (ETDEWEB)

    Krapez, J.C. [Office National d' Etudes et de Recherches Aerospatiales (ONERA), Dept. Mecanique du solide et de l' Endommagement, 92 - Chatillon (France); Dubernard, A.; Stachowiak, H. [Universite d' Artois, Lab. d' Artois de Mecanique et Habitat, equipe Materiaux Thermique Instrumentation, 62 - Bethune (France)] (and others)

    2000-07-01

    This congress, on thermology, took place at Lyon in France, the 15-17 may 2000 with a presentation of 143 papers on the recent researches and specialized discussions. The talks published in this book are sorted out in ten thema. One of the thema concerns the experimental and inverse technics and the data processing. Seventeen talks are presented. They cover the domain of the nondestructive testing of temperature and diffusivity, many studies on the photothermal radiometry and inverse problems as the development of an inverse heat conduction method applied to the interaction flame/wall. This section presents also two papers applied to the energy conservation, one in the buildings sector with the feasibility of a method to separate thermal exchanges by convection and by radiation, the other one to measure the temperature of fuel droplets injected in a combustion chamber. (A.L.B.)

  15. Constraining inverse-curvature gravity with supernovae.

    Science.gov (United States)

    Mena, Olga; Santiago, José; Weller, Jochen

    2006-02-03

    We show that models of generalized modified gravity, with inverse powers of the curvature, can explain the current accelerated expansion of the Universe without resorting to dark energy and without conflicting with solar system experiments. We have solved the Friedmann equations for the full dynamical range of the evolution of the Universe and performed a detailed analysis of supernovae data in the context of such models that results in an excellent fit. If we further include constraints on the current expansion of the Universe and on its age, we obtain that the matter content of the Universe is 0.07baryonic matter component.

  16. Interferogram analysis using the Abel inversion technique

    International Nuclear Information System (INIS)

    Yusof Munajat; Mohamad Kadim Suaidi

    2000-01-01

    High speed and high resolution optical detection system were used to capture the image of acoustic waves propagation. The freeze image in the form of interferogram was analysed to calculate the transient pressure profile of the acoustic waves. The interferogram analysis was based on the fringe shift and the application of the Abel inversion technique. An easier approach was made by mean of using MathCAD program as a tool in the programming; yet powerful enough to make such calculation, plotting and transfer of file. (Author)

  17. Transmuted New Generalized Inverse Weibull Distribution

    Directory of Open Access Journals (Sweden)

    Muhammad Shuaib Khan

    2017-06-01

    Full Text Available This paper introduces the transmuted new generalized inverse Weibull distribution by using the quadratic rank transmutation map (QRTM scheme studied by Shaw et al. (2007. The proposed model contains the twenty three lifetime distributions as special sub-models. Some mathematical properties of the new distribution are formulated, such as quantile function, Rényi entropy, mean deviations, moments, moment generating function and order statistics. The method of maximum likelihood is used for estimating the model parameters. We illustrate the flexibility and potential usefulness of the new distribution by using reliability data.

  18. Multiscale phase inversion of seismic marine data

    KAUST Repository

    Fu, Lei

    2017-08-17

    We test the feasibility of applying multiscale phase inversion (MPI) to seismic marine data. To avoid cycle-skipping, the multiscale strategy temporally integrates the traces several times, i.e. high-order integration, to produce low-boost seismograms that are used as input data for the initial iterations of MPI. As the iterations proceed, higher frequencies in the data are boosted by using integrated traces of lower order as the input data. Results with synthetic data and field data from the Gulf of Mexico produce robust and accurate results if the model does not contain strong velocity contrasts such as salt-sediment interfaces.

  19. Parallel block inversion of geophysical data

    Science.gov (United States)

    Pereyra, Victor L.

    1993-12-01

    We present an automatic blocking algorithm for some medium size nonlinear least squares problems that arise in the inversion of travel time data in geophysics. This blocking leads to a nonlinear Gauss-Seidel type iteration which can be distributed to a network of computers. The low dimensional blocks are also amenable to global optimization methods which leads to further parallelization. All this is necessary because the original problem is generally non- convex, ill-conditioned, with a goal functional that is very expensive to evaluate.

  20. Thermodynamic inversion origin of living systems

    CERN Document Server

    Kompanichenko, Vladimir N

    2017-01-01

    This book discusses the theory, general principles, and energy source conditions allowing for the emergence of life in planetary systems. The author examines the material conditions found in natural hydrothermal sites, the appropriate analogs of prebiotic environments on early Earth. He provides an overview of current laboratory experiments in prebiotic materials chemistry and substantiation of a new direction for the experiments in the origin of life field. Describes thermodynamic inversion and how it relates to the living cell; Examines the current direction of experiments on prebiotic materials chemistry; Introduces and substantiates necessary conditions for the emergence of life.

  1. Deep controls on intraplate basin inversion

    DEFF Research Database (Denmark)

    Nielsen, S.B.; Stephenson, Randell Alexander; Schiffer, Christian

    2014-01-01

    favourably orientated with respect to pre-existing structures in the lithosphere. Furthermore, stresses derived from lithospheric potential energy variations as well as those from plate boundary forces must be taken into account in order to explain intraplate seismicity and deformation such as basin......Basin inversion is an intermediate-scale manifestation of continental intraplate deformation, which produces earthquake activity in the interior of continents. The sedimentary basins of central Europe, inverted in the Late Cretaceous– Paleocene, represent a classic example of this phenomenon...

  2. Review of ankle inversion sprain simulators in the biomechanics laboratory

    Directory of Open Access Journals (Sweden)

    Sophia Chui-Wai Ha

    2015-10-01

    Full Text Available Ankle inversion ligamentous sprain is one of the most common sports injuries. The most direct way is to investigate real injury incidents, but it is unethical and impossible to replicate on test participants. Simulators including tilt platforms, trapdoors, and fulcrum devices were designed to mimic ankle inversion movements in laboratories. Inversion angle was the only element considered in early designs; however, an ankle sprain is composed of inversion and plantarflexion in clinical observations. Inversion velocity is another parameter that increased the reality of simulation. This review summarised the simulators, and aimed to compare and contrast their features and settings.

  3. Linearized inversion of two components seismic data; Inversion linearisee de donnees sismiques a deux composantes

    Energy Technology Data Exchange (ETDEWEB)

    Lebrun, D.

    1997-05-22

    The aim of the dissertation is the linearized inversion of multicomponent seismic data for 3D elastic horizontally stratified media, using Born approximation. A Jacobian matrix is constructed; it will be used to model seismic data from elastic parameters. The inversion technique, relying on single value decomposition (SVD) of the Jacobian matrix, is described. Next, the resolution of inverted elastic parameters is quantitatively studies. A first use of the technique is shown in the frame of an evaluation of a sea bottom acquisition (synthetic data). Finally, a real data set acquired with conventional marine technique is inverted. (author) 70 refs.

  4. Fcgamma receptor IIIA polymorphism as a risk-factor for coronary artery disease.

    Science.gov (United States)

    Gavasso, Sonia; Nygård, Ottar; Pedersen, Eva Ringdal; Aarseth, Jan H; Bleie, Oyvind; Myhr, Kjell-Morten; Vedeler, Christian A

    2005-06-01

    Inflammation is important in the pathogenesis of atherosclerosis. Polymorphisms of Fc receptors for IgG (FcgammaR) are associated with modifying effects of several infectious and autoimmune diseases. We have assessed the relationship between polymorphisms in three different FcgammaR genes and coronary artery disease (CAD). We genotyped for the FcgammaRIIA-R/H131, the FcgammaRIIIB-Na1/Na2, and the FcgammaRIIIA-F/V158 polymorphisms in 882 patients undergoing diagnostic coronary angiography. Significant CAD was defined as >/=50% lumen diameter stenosis in at least one coronary artery. In the analysis, no association was found between the FcgammaRIIA and FcgammaRIIIB genotypes and CAD, whereas the FcgammaRIIIA genotype was strongly related. Compared to those being heterozygous, or homozygous for the F allele, patients homozygous for the V allele had significantly reduced risk: OR, 0.53; (CI, 0.32-0.90). Additional adjustment for classical risk factors and sedimentation rate did not affect the results. The V/V genotype was also inversely related to the extent of CAD defined as no CAD, single, double or triple vessel disease (P trend=0.002). Our data provide evidence for an association between FcgammaRIIIA allelic variants and coronary atherosclerosis. Genetic variation in this IgG-receptor may influence the clearance of antibodies by monocyte-derived macrophages involved in the pathogenesis of CAD.

  5. Look-up table (LUT) method for inverse halftoning.

    Science.gov (United States)

    Mese, M; Vaidyanathan, P P

    2001-01-01

    In this paper we propose look-up table (LUT) based methods for inverse halftoning of images. The LUT for inverse halftoning is obtained from the histogram gathered from a few sample halftone images and corresponding original images. The method is extremely fast (no filtering is required) and the PSNR and visual image quality achieved is comparable to the best methods known for inverse halftoning. The LUT inverse halftoning method does not depend on the specific properties of the halftoning method, and can be applied to any halftoning method. Then, an algorithm for template selection for LUT inverse halftoning is introduced. We demonstrate the performance of the LUT inverse halftoning algorithm on error diffused images and ordered dithered images. We also extend LUT inverse halftoning to color halftones.

  6. Inverse Kinematics With Closed Form Solution For Denso Robot Manipulator

    Directory of Open Access Journals (Sweden)

    Ikhsan Eka Prasetia

    2015-03-01

    Full Text Available In this paper, the forward kinematics and inverse kinematics used on the Denso robot manipulator which has a 6-DOF. The forward kinematics will result in the desired position by end-effector, while inverse kinematics produce angel on each joint. Inverse kinematics problem are very difficult, therefor to obtain the solution of inverse kinematics using closed form solution with geometry approach. The simulation result obtained from forward kinematics and inverse kinematics is determining desired position by Denso robot manipulator. Forward kinematics produce the desired position by the end-effector. Inverse kinematics produce joint angle, where the inverse kinematics produce eight conditions obtained from closed form solution with geometry approach to reach the desired position by the end-effector.

  7. Evaluating Ethical Responsibility in Inverse Decision Support

    Directory of Open Access Journals (Sweden)

    Ahmad M. Kabil

    2012-01-01

    Full Text Available Decision makers have considerable autonomy on how they make decisions and what type of support they receive. This situation places the DSS analyst in a different relationship with the client than his colleagues who support regular MIS applications. This paper addresses an ethical dilemma in “Inverse Decision Support,” when the analyst supports a decision maker who requires justification for a preconceived selection that does not correspond to the best option that resulted from the professional resolution of the problem. An extended application of the AHP model is proposed for evaluating the ethical responsibility in selecting a suboptimal alternative. The extended application is consistent with the Inverse Decision Theory that is used extensively in medical decision making. A survey of decision analysts is used to assess their perspective of using the proposed extended application. The results show that 80% of the respondents felt that the proposed extended application is useful in business practices. 14% of them expanded the usability of the extended application to academic teaching of the ethics theory. The extended application is considered more usable in a country with a higher Transparency International Corruption Perceptions Index (TICPI than in a country with a lower one.

  8. Approaching the Island of Inversion: 34P

    Energy Technology Data Exchange (ETDEWEB)

    Bender, P.C.; Hoffman, C.R.; Wiedeking, M.; Allmond, J.M.; Bernstein, L.A.; Burke, J.T.; Bleuel, D.L.; Clark, R.M.; Fallon, P.; Goldblum, B.L.; Hinners, T.A.; Jeppesen, H.B.; Lee, Sangjin; Lee, I.Y.; Lesher, S.R.; Machiavelli, A.O.; McMahan, M.A.; Morris, D.; Perry, M.; Phair, L.; Scielzo, N.D.; Tabor, S.L.; Tripathi, Vandana; Volya, A.

    2011-06-14

    Yrast states in 34P were investigated using the 18O(18O,pn) reaction at energies of 20, 24, 25, 30, and 44 MeV at Florida State University and at Lawrence Berkeley National Laboratory. The level scheme was expanded, ray angular distributions were measured, and lifetimes were inferred with the Doppler-shift attenuation method by detecting decay protons in coincidence with one or more rays. The results provide a clearer picture of the evolution of structure approaching the 'Island of Inversion', particularly how the 1 and 2 particle-hole (ph) states fall in energy with increasing neutro number approaching inversion. However, the agreement of the lowest few states with pure sd shell model predictions shows that the level scheme of 34P is not itself inverted. Rather, the accumulated evidence indicates that the 1-ph states start at 2.3 MeV. A good candidate for the lowest 2-ph state lies at 6236 keV, just below the neutron separation energy of 6291 keV. Shell model calculations made using a small modification of the WBP interaction reproduce the negative-parity, 1-ph states rather well.

  9. An Entropic Estimator for Linear Inverse Problems

    Directory of Open Access Journals (Sweden)

    Amos Golan

    2012-05-01

    Full Text Available In this paper we examine an Information-Theoretic method for solving noisy linear inverse estimation problems which encompasses under a single framework a whole class of estimation methods. Under this framework, the prior information about the unknown parameters (when such information exists, and constraints on the parameters can be incorporated in the statement of the problem. The method builds on the basics of the maximum entropy principle and consists of transforming the original problem into an estimation of a probability density on an appropriate space naturally associated with the statement of the problem. This estimation method is generic in the sense that it provides a framework for analyzing non-normal models, it is easy to implement and is suitable for all types of inverse problems such as small and or ill-conditioned, noisy data. First order approximation, large sample properties and convergence in distribution are developed as well. Analytical examples, statistics for model comparisons and evaluations, that are inherent to this method, are discussed and complemented with explicit examples.

  10. Neutron inverse kinetics via Gaussian Processes

    International Nuclear Information System (INIS)

    Picca, Paolo; Furfaro, Roberto

    2012-01-01

    Highlights: ► A novel technique for the interpretation of experiments in ADS is presented. ► The technique is based on Bayesian regression, implemented via Gaussian Processes. ► GPs overcome the limits of classical methods, based on PK approximation. ► Results compares GPs and ANN performance, underlining similarities and differences. - Abstract: The paper introduces the application of Gaussian Processes (GPs) to determine the subcriticality level in accelerator-driven systems (ADSs) through the interpretation of pulsed experiment data. ADSs have peculiar kinetic properties due to their special core design. For this reason, classical – inversion techniques based on point kinetic (PK) generally fail to generate an accurate estimate of reactor subcriticality. Similarly to Artificial Neural Networks (ANNs), Gaussian Processes can be successfully trained to learn the underlying inverse neutron kinetic model and, as such, they are not limited to the model choice. Importantly, GPs are strongly rooted into the Bayes’ theorem which makes them a powerful tool for statistical inference. Here, GPs have been designed and trained on a set of kinetics models (e.g. point kinetics and multi-point kinetics) for homogeneous and heterogeneous settings. The results presented in the paper show that GPs are very efficient and accurate in predicting the reactivity for ADS-like systems. The variance computed via GPs may provide an indication on how to generate additional data as function of the desired accuracy.

  11. Inverse Statistics and Asset Allocation Efficiency

    Science.gov (United States)

    Bolgorian, Meysam

    In this paper using inverse statistics analysis, the effect of investment horizon on the efficiency of portfolio selection is examined. Inverse statistics analysis is a general tool also known as probability distribution of exit time that is used for detecting the distribution of the time in which a stochastic process exits from a zone. This analysis was used in Refs. 1 and 2 for studying the financial returns time series. This distribution provides an optimal investment horizon which determines the most likely horizon for gaining a specific return. Using samples of stocks from Tehran Stock Exchange (TSE) as an emerging market and S&P 500 as a developed market, effect of optimal investment horizon in asset allocation is assessed. It is found that taking into account the optimal investment horizon in TSE leads to more efficiency for large size portfolios while for stocks selected from S&P 500, regardless of portfolio size, this strategy does not only not produce more efficient portfolios, but also longer investment horizons provides more efficiency.

  12. Inverse Variational Problem for Nonstandard Lagrangians

    Science.gov (United States)

    Saha, A.; Talukdar, B.

    2014-06-01

    In the mathematical physics literature the nonstandard Lagrangians (NSLs) were introduced in an ad hoc fashion rather than being derived from the solution of the inverse problem of variational calculus. We begin with the first integral of the equation of motion and solve the associated inverse problem to obtain some of the existing results for NSLs. In addition, we provide a number of alternative Lagrangian representations. The case studies envisaged by us include (i) the usual modified Emden-type equation, (ii) Emden-type equation with dissipative term quadratic in velocity, (iii) Lotka-Volterra model and (vi) a number of the generic equations for dissipative-like dynamical systems. Our method works for nonstandard Lagrangians corresponding to the usual action integral of mechanical systems but requires modification for those associated with the modified actions like S =∫abe L(x ,x˙ , t) dt and S =∫abL 1 - γ(x ,x˙ , t) dt because in the latter case one cannot construct expressions for the Jacobi integrals.

  13. Wave-equation reflection traveltime inversion

    KAUST Repository

    Zhang, Sanzong

    2011-01-01

    The main difficulty with iterative waveform inversion using a gradient optimization method is that it tends to get stuck in local minima associated within the waveform misfit function. This is because the waveform misfit function is highly nonlinear with respect to changes in the velocity model. To reduce this nonlinearity, we present a reflection traveltime tomography method based on the wave equation which enjoys a more quasi-linear relationship between the model and the data. A local crosscorrelation of the windowed downgoing direct wave and the upgoing reflection wave at the image point yields the lag time that maximizes the correlation. This lag time represents the reflection traveltime residual that is back-projected into the earth model to update the velocity in the same way as wave-equation transmission traveltime inversion. No travel-time picking is needed and no high-frequency approximation is assumed. The mathematical derivation and the numerical examples are presented to partly demonstrate its efficiency and robustness. © 2011 Society of Exploration Geophysicists.

  14. Eigenvectors phase correction in inverse modal problem

    Science.gov (United States)

    Qiao, Guandong; Rahmatalla, Salam

    2017-12-01

    The solution of the inverse modal problem for the spatial parameters of mechanical and structural systems is heavily dependent on the quality of the modal parameters obtained from the experiments. While experimental and environmental noises will always exist during modal testing, the resulting modal parameters are expected to be corrupted with different levels of noise. A novel methodology is presented in this work to mitigate the errors in the eigenvectors when solving the inverse modal problem for the spatial parameters. The phases of the eigenvector component were utilized as design variables within an optimization problem that minimizes the difference between the calculated and experimental transfer functions. The equation of motion in terms of the modal and spatial parameters was used as a constraint in the optimization problem. Constraints that reserve the positive and semi-positive definiteness and the inter-connectivity of the spatial matrices were implemented using semi-definite programming. Numerical examples utilizing noisy eigenvectors with augmented Gaussian white noise of 1%, 5%, and 10% were used to demonstrate the efficacy of the proposed method. The results showed that the proposed method is superior when compared with a known method in the literature.

  15. Inverse Magnetoresistance in Polymer Spin Valves.

    Science.gov (United States)

    Ding, Shuaishuai; Tian, Yuan; Li, Yang; Mi, Wenbo; Dong, Huanli; Zhang, Xiaotao; Hu, Wenping; Zhu, Daoben

    2017-05-10

    In this work, both negative and positive magnetoresistance (MR) in solution-processed regioregular poly(3-hexylthiophene) (RR-P3HT) is observed in organic spin valves (OSVs) with vertical La 2/3 Sr 1/3 MnO 3 (LSMO)/P3HT/AlO x /Co configuration. The ferromagnetic (FM) LSMO electrode with near-atomic flatness is fabricated by a DC facing-target magnetron sputtering method. This research is focused on the origin of the MR inversion. Two types of devices are investigated in details: One with Co penetration shows a negative MR of 0.2%, while the other well-defined device with a nonlinear behavior has a positive MR of 15.6%. The MR measurements in LSMO/AlO x /Co and LSMO/Co junctions are carried to exclude the interference of insulating layer and two FM electrodes themselves. By examining the Co thicknesses and their corresponding magnetic hysteresis loops, a spin-dependent hybrid-interface-state model by Co penetration is induced to explain the MR sign inversion. These results proven by density functional theory (DFT) calculations may shed light on the controllable interfacial properties in designing novel OSV devices.

  16. Inverse PCR for Point Mutation Introduction.

    Science.gov (United States)

    Silva, Diogo; Santos, Gustavo; Barroca, Mário; Collins, Tony

    2017-01-01

    Inverse PCR is a powerful tool for the rapid introduction of desired mutations at desired positions in a circular double-stranded DNA sequence. Here, custom-designed mutant primers oriented in the inverse direction are used to amplify the entire circular template with incorporation of the required mutation(s). By careful primer design it can be used to perform such diverse modifications as the introduction of point mutations and multiple mutations, the insertion of new sequences, and even sequence deletions. Three primer formats are commonly used; nonoverlapping, partially overlapping and fully overlapping primers, and here we describe the use of nonoverlapping primers for introduction of a point mutation. Use of such a primer setup in the PCR reaction, with one of the primers containing the desired mismatch mutation, results in the amplification of a linear, double-stranded, mutated product. Methylated template DNA is removed from the nonmethylated PCR product by DpnI digestion and the PCR product is then phosphorylated by polynucleotide kinase treatment before being recircularized by ligation, and transformed to E. coli. This relatively simple site-directed mutagenesis procedure is of major importance in biology and biotechnology today where it is commonly employed for the study and engineering of DNA, RNA, and proteins.

  17. Spectral solution of the inverse Mie problem

    Science.gov (United States)

    Romanov, Andrey V.; Konokhova, Anastasiya I.; Yastrebova, Ekaterina S.; Gilev, Konstantin V.; Strokotov, Dmitry I.; Chernyshev, Andrei V.; Maltsev, Valeri P.; Yurkin, Maxim A.

    2017-10-01

    We developed a fast method to determine size and refractive index of homogeneous spheres from the power Fourier spectrum of their light-scattering patterns (LSPs), measured with the scanning flow cytometer. Specifically, we used two spectral parameters: the location of the non-zero peak and zero-frequency amplitude, and numerically inverted the map from the space of particle characteristics (size and refractive index) to the space of spectral parameters. The latter parameters can be reliably resolved only for particle size parameter greater than 11, and the inversion is unique only in the limited range of refractive index with upper limit between 1.1 and 1.25 (relative to the medium) depending on the size parameter and particular definition of uniqueness. The developed method was tested on two experimental samples, milk fat globules and spherized red blood cells, and resulted in accuracy not worse than the reference method based on the least-square fit of the LSP with the Mie theory. Moreover, for particles with significant deviation from the spherical shape the spectral method was much closer to the Mie-fit result than the estimated uncertainty of the latter. The spectral method also showed adequate results for synthetic LSPs of spheroids with aspect ratios up to 1.4. Overall, we present a general framework, which can be used to construct an inverse algorithm for any other experimental signals.

  18. Modular inverse reinforcement learning for visuomotor behavior.

    Science.gov (United States)

    Rothkopf, Constantin A; Ballard, Dana H

    2013-08-01

    In a large variety of situations one would like to have an expressive and accurate model of observed animal or human behavior. While general purpose mathematical models may capture successfully properties of observed behavior, it is desirable to root models in biological facts. Because of ample empirical evidence for reward-based learning in visuomotor tasks, we use a computational model based on the assumption that the observed agent is balancing the costs and benefits of its behavior to meet its goals. This leads to using the framework of reinforcement learning, which additionally provides well-established algorithms for learning of visuomotor task solutions. To quantify the agent's goals as rewards implicit in the observed behavior, we propose to use inverse reinforcement learning, which quantifies the agent's goals as rewards implicit in the observed behavior. Based on the assumption of a modular cognitive architecture, we introduce a modular inverse reinforcement learning algorithm that estimates the relative reward contributions of the component tasks in navigation, consisting of following a path while avoiding obstacles and approaching targets. It is shown how to recover the component reward weights for individual tasks and that variability in observed trajectories can be explained succinctly through behavioral goals. It is demonstrated through simulations that good estimates can be obtained already with modest amounts of observation data, which in turn allows the prediction of behavior in novel configurations.

  19. Evidence that meiotic pairing starts at the telomeres: Molecular analysis of recombination in a family with a pericentric X chromosome inversion

    Energy Technology Data Exchange (ETDEWEB)

    Shashi, V.; Allinson, P.S.; Golden, W.L.; Kelly, T.E. [Univ. of Virginia, Charlottesville, VA (United States)

    1994-09-01

    Recent studies in yeast have shown that telomeres rather than centromeres lead in chromosome movement just prior to meiosis and may have a role in recombination. Cytological studies of meiosis in Drosophila and mice have shown that in pericentric inversion heterozygotes there is lack of loop formation, with recobmination seen only outside the inversion. In a family with Duchenne muscular dystrophy (DMD) we recognized that only affected males and carrier females had a pericentric X chromosome inversion (inv X(p11.4;q26)). Since the short arm inversion breakpoint was proximal to the DMD locus, it could not be implicated in the mutational event causing DMD. There was no history of infertility, recurrent miscarriages or liveborn unbalanced females to suggest there was recombination within the inversion. We studied 22 members over three generations to understand the pattern of meiotic recombination between the normal and the inverted X chromosome. In total, 17 meioses involving the inverted X chromosome in females were studied by cytogenetic analysis and 16 CA repeat polymorphisms along the length of the X chromosome. Results: (a) There was complete concordance between the segregation of the DMD mutation and the inverted X chromosome. (b) On DNA analysis, there was complete absence of recombination within the inverted segment. We also found no recombination at the DMD locus. Recombination was seen only at Xp22 and Xq27-28. (c) Recombination was seen in the same individual at both Xp22 and Xq27-28 without recombination otherwise. Conclusions: (1) Pericentric X inversions reduce the genetic map length of the chromosome, with the physical map length being normal. (2) Meiotic X chromosome pairing in this family is initiated at the telomeres. (3) Following telomeric pairing in pericentric X chromosome inversions, there is inhibition of recombination within the inversion and adjacent regions.

  20. Inverse modeling of April 2013 radioxenon detections

    Science.gov (United States)

    Hofman, Radek; Seibert, Petra; Philipp, Anne

    2014-05-01

    Significant concentrations of radioactive xenon isotopes (radioxenon) were detected by the International Monitoring System (IMS) for verification of the Comprehensive Nuclear-Test-Ban Treaty (CTBT) in April 2013 in Japan. Particularly, three detections of Xe-133 made between 2013-04-07 18:00 UTC and 2013-04-09 06:00 UTC at the station JPX38 are quite notable with respect to the measurement history of the station. Our goal is to analyze the data and perform inverse modeling under different assumptions. This work is useful with respect to nuclear test monitoring as well as for the analysis of and response to nuclear emergencies. Two main scenarios will be pursued: (i) Source location is assumed to be known (DPRK test site). (ii) Source location is considered unknown. We attempt to estimate the source strength and the source strength along with its plausible location compatible with the data in scenario (i) and (ii), respectively. We are considering also the possibility of a vertically distributed source. Calculations of source-receptor sensitivity (SRS) fields and the subsequent inversion are aimed at going beyond routine calculations performed by the CTBTO. For SRS calculations, we employ the Lagrangian particle dispersion model FLEXPART with high resolution ECMWF meteorological data (grid cell sizes of 0.5, 0.25 and ca. 0.125 deg). This is important in situations where receptors or sources are located in complex terrain which is the case of the likely source of detections-the DPRK test site. SRS will be calculated with convection enabled in FLEXPART which will also increase model accuracy. In the variational inversion procedure attention will be paid not only to all significant detections and their uncertainties but also to non-detections which can have a large impact on inversion quality. We try to develop and implement an objective algorithm for inclusion of relevant data where samples from temporal and spatial vicinity of significant detections are added in an

  1. Optimal Inversion Parameters for Full Waveform Inversion using OBS Data Set

    Science.gov (United States)

    Kim, S.; Chung, W.; Shin, S.; Kim, D.; Lee, D.

    2017-12-01

    In recent years, full Waveform Inversion (FWI) has been the most researched technique in seismic data processing. It uses the residuals between observed and modeled data as an objective function; thereafter, the final subsurface velocity model is generated through a series of iterations meant to minimize the residuals.Research on FWI has expanded from acoustic media to elastic media. In acoustic media, the subsurface property is defined by P-velocity; however, in elastic media, properties are defined by multiple parameters, such as P-velocity, S-velocity, and density. Further, the elastic media can also be defined by Lamé constants, density or impedance PI, SI; consequently, research is being carried out to ascertain the optimal parameters.From results of advanced exploration equipment and Ocean Bottom Seismic (OBS) survey, it is now possible to obtain multi-component seismic data. However, to perform FWI on these data and generate an accurate subsurface model, it is important to determine optimal inversion parameters among (Vp, Vs, ρ), (λ, μ, ρ), and (PI, SI) in elastic media. In this study, staggered grid finite difference method was applied to simulate OBS survey. As in inversion, l2-norm was set as objective function. Further, the accurate computation of gradient direction was performed using the back-propagation technique and its scaling was done using the Pseudo-hessian matrix.In acoustic media, only Vp is used as the inversion parameter. In contrast, various sets of parameters, such as (Vp, Vs, ρ) and (λ, μ, ρ) can be used to define inversion in elastic media. Therefore, it is important to ascertain the parameter that gives the most accurate result for inversion with OBS data set.In this study, we generated Vp and Vs subsurface models by using (λ, μ, ρ) and (Vp, Vs, ρ) as inversion parameters in every iteration, and compared the final two FWI results.This research was supported by the Basic Research Project(17-3312) of the Korea Institute of

  2. The pattern of polymorphism in Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    2005-07-01

    Full Text Available We resequenced 876 short fragments in a sample of 96 individuals of Arabidopsis thaliana that included stock center accessions as well as a hierarchical sample from natural populations. Although A. thaliana is a selfing weed, the pattern of polymorphism in general agrees with what is expected for a widely distributed, sexually reproducing species. Linkage disequilibrium decays rapidly, within 50 kb. Variation is shared worldwide, although population structure and isolation by distance are evident. The data fail to fit standard neutral models in several ways. There is a genome-wide excess of rare alleles, at least partially due to selection. There is too much variation between genomic regions in the level of polymorphism. The local level of polymorphism is negatively correlated with gene density and positively correlated with segmental duplications. Because the data do not fit theoretical null distributions, attempts to infer natural selection from polymorphism data will require genome-wide surveys of polymorphism in order to identify anomalous regions. Despite this, our data support the utility of A. thaliana as a model for evolutionary functional genomics.

  3. The V471A polymorphism in autophagy-related gene ATG7 modifies age at onset specifically in Italian Huntington disease patients

    DEFF Research Database (Denmark)

    Metzger, Silke; Walter, Carolin; Riess, Olaf

    2013-01-01

    The cause of Huntington disease (HD) is a polyglutamine repeat expansion of more than 36 units in the huntingtin protein, which is inversely correlated with the age at onset of the disease. However, additional genetic factors are believed to modify the course and the age at onset of HD. Recently......, we identified the V471A polymorphism in the autophagy-related gene ATG7, a key component of the autophagy pathway that plays an important role in HD pathogenesis, to be associated with the age at onset in a large group of European Huntington disease patients. To confirm this association in a second...... a modifying effect of ATG7 in these REGISTRY patients and in patients of our previous HD cohort according to their ethnic origin, we identified a significant effect of the ATG7 V471A polymorphism on the HD age at onset only in the Italian population (327 patients). In these Italian patients, the polymorphism...

  4. Geographical changes in relative frequency of inversions in chromosome III of Drosophila pseudoobscura among natural populations from Mexico

    Directory of Open Access Journals (Sweden)

    Salceda Víctor M.

    2009-01-01

    Full Text Available Chromosomal polymorphism in natural populations of Drosophila pseudoobscura have been broadly studied in the USA but scarcely in Mexico where only about 60 localities have been analyzed. Differences among both regions are notorious with respect to their chromosomal constitution. Northern populations, those of USA, have as representative inversions the sequences ST, AR and CH contrasting with those in Southern populations (Mexico in which prevail the gene arrangements TL, CU and SC. Assuming as a probable mechanism that has allowed these substitutions the flow generated by the presence of a North - South clines, we took as a goal find out if such clines really exist. With that objective in mind we studied 29 populations of this species distributed along four North - South transects. Specimens of D. pseudoobscura caught by attracting them with fermenting bananas were carried to the laboratory where from each female an isofemale line was established. When their offspring appeared a single larva from each isofemale was taken, its salivary glands extracted and stained with a solution of lacto-aceto- orcein, by these means the polytene chromosomes were obtained. On these chromosomes we identified, for each larva, the inversion (s carried in the third chromosome, in such a way 3439 third chromosomes were analyzed. Among the 29 localities we identified 17 different inversions but the number of them varied from population to population from three to eleven. Relative frequencies of each inversion at every location were calculated and with them for each transect the presence or absence of clines was determined. Among each transect the existence of clines was observed only between two or three near by populations, but we were not able to find a clear manifestation of the presence of clines along a complete transect. Our results at this respect are similar to those previously reported for USA populations. A mechanism that explains North - South substitutions

  5. Bilinear Inverse Problems: Theory, Algorithms, and Applications

    Science.gov (United States)

    Ling, Shuyang

    We will discuss how several important real-world signal processing problems, such as self-calibration and blind deconvolution, can be modeled as bilinear inverse problems and solved by convex and nonconvex optimization approaches. In Chapter 2, we bring together three seemingly unrelated concepts, self-calibration, compressive sensing and biconvex optimization. We show how several self-calibration problems can be treated efficiently within the framework of biconvex compressive sensing via a new method called SparseLift. More specifically, we consider a linear system of equations y = DAx, where the diagonal matrix D (which models the calibration error) is unknown and x is an unknown sparse signal. By "lifting" this biconvex inverse problem and exploiting sparsity in this model, we derive explicit theoretical guarantees under which both x and D can be recovered exactly, robustly, and numerically efficiently. In Chapter 3, we study the question of the joint blind deconvolution and blind demixing, i.e., extracting a sequence of functions [special characters omitted] from observing only the sum of their convolutions [special characters omitted]. In particular, for the special case s = 1, it becomes the well-known blind deconvolution problem. We present a non-convex algorithm which guarantees exact recovery under conditions that are competitive with convex optimization methods, with the additional advantage of being computationally much more efficient. We discuss several applications of the proposed framework in image processing and wireless communications in connection with the Internet-of-Things. In Chapter 4, we consider three different self-calibration models of practical relevance. We show how their corresponding bilinear inverse problems can be solved by both the simple linear least squares approach and the SVD-based approach. As a consequence, the proposed algorithms are numerically extremely efficient, thus allowing for real-time deployment. Explicit theoretical

  6. Nonlinear Spatial Inversion Without Monte Carlo Sampling

    Science.gov (United States)

    Curtis, A.; Nawaz, A.

    2017-12-01

    High-dimensional, nonlinear inverse or inference problems usually have non-unique solutions. The distribution of solutions are described by probability distributions, and these are usually found using Monte Carlo (MC) sampling methods. These take pseudo-random samples of models in parameter space, calculate the probability of each sample given available data and other information, and thus map out high or low probability values of model parameters. However, such methods would converge to the solution only as the number of samples tends to infinity; in practice, MC is found to be slow to converge, convergence is not guaranteed to be achieved in finite time, and detection of convergence requires the use of subjective criteria. We propose a method for Bayesian inversion of categorical variables such as geological facies or rock types in spatial problems, which requires no sampling at all. The method uses a 2-D Hidden Markov Model over a grid of cells, where observations represent localized data constraining the model in each cell. The data in our example application are seismic properties such as P- and S-wave impedances or rock density; our model parameters are the hidden states and represent the geological rock types in each cell. The observations at each location are assumed to depend on the facies at that location only - an assumption referred to as `localized likelihoods'. However, the facies at a location cannot be determined solely by the observation at that location as it also depends on prior information concerning its correlation with the spatial distribution of facies elsewhere. Such prior information is included in the inversion in the form of a training image which represents a conceptual depiction of the distribution of local geologies that might be expected, but other forms of prior information can be used in the method as desired. The method provides direct (pseudo-analytic) estimates of posterior marginal probability distributions over each variable

  7. Experimental characterization of methane inverse diffusion flame

    KAUST Repository

    Elbaz, Ayman M.

    2014-06-26

    This article presents 10-kHz images of OH-PLIF simultaneously with 2-D PIV measurements in an inverse methane diffusion flame. Under a constant fuel flow rate, the central air jet Re was varied, leading to air to fuel velocity ratio, Vr, to vary from 8.3 to 66.5. Starting from Vr = 20.7, the flame is commonly characterized by three distinct zones. The length of the lower fuel entrainment region is inversely proportional to Vr. The flames investigated resemble a string shear layer confining this zone, and converging into the second distinct region, the flame neck zone. The third region is the rest of the flame, which spreads in a jet-like manner. The inverse diffusion flames exhibit varying degrees of partial premixing, depending upon on the velocity ratio Vr, and this region of partial premixing evolves into a well-mixed reaction zone along the flame centerline. The OH distribution correlated with the changes in the mean characteristics of the flow through reduction in the local Reynolds number due to heat release. The existence of a flame suppresses or laminarizes the turbulence at early axial locations and promotes fluctuations at the flame tip for flames with Vr < 49.8. In addition, the flame jet width can be correlated to the OH distribution. In upstream regions of the flames, the breaks in OH are counterbalanced by flame closures and are governed by edge flame propagation. These local extinctions were found to occur at locations where large flow structures were impinging on the flame and are associated with a locally higher strain rate or correlated to the local high strain rates at the flame hole edges without this flow impinging. Another contributor to re-ignition was found to be growing flame kernels. As the flames approach global blow-off, these kernels become the main mechanism for re-ignition further downstream of the flames. At low Vr, laminarization within the early regions of the flame provides an effective shield, preventing the jet flow from

  8. Inversion of the uterus following abortion.

    Science.gov (United States)

    Gupta, A S; Datta, N; Ghosh, D

    1982-10-16

    A case of inversion of the uterus following abortion is reported. The 35-year old patient, admitted October 10, 1978 to the Medical College and Hospitals in Calcutta, India was referred by a private practitioner with a history of amenorrhea for 16 weeks, bleeding for 3 days, expulsion of the fetus 3 days earlier, and something coming down per vaginum for 2 days. The patient was para 4+0 (all full term normal deliveries) and home delivery for the last child 1 1/2 years earlier. She had a history of regular menstrual periods. Her general condition was poor. The examination revealed a gangrenous mass coming out of the vulva with a very offensive smell. There was a raw surface on which placenta like tissue was attached. No active bleeding was seen. Fundus and cervix of the uterus could not be felt. On rectal examination the uterus could not be felt, a cup-like depression was felt at the site of the uterus. The provision diagnosis was inversion of uterus following abortion. Treatment was started with sedatives and antibiotics, and arrangements were made for a blood transfusion. The vaginal mass was covered with glycerine and acriflavine gauze, and a hysterectomy was decided upon after improvement of her general condition and control of the infection. On October 14th, the patient was placed in knee chest position and posterior vaginal wall was retracted with Sims' speculum when the inverted lump was spontaneously reduced within the vagina. The inverted uterus was felt in the region of the vaginal vault. Glycerine acriflavine pack was given which was taken out and repack was given daily until the operation. The hysterectomy was performed on October 23rd. The abdomen was opened up by a transverse incision and the pelvis was explored. In the region of the uterus a cup-shaped depression was noted. Tubes and ovaries of both sides were seen hanging laterally from the cupped area. The left tube was found congested and thickened. Reduction of uterus was done by making a vertical

  9. Folic acid, polymorphism of methyl-group metabolism genes, and DNA methylation in relation to GI carcinogenesis.

    Science.gov (United States)

    Fang, Jing Yuan; Xiao, Shu Dong

    2003-01-01

    DNA methylation is the main epigenetic modification after replication in humans. DNA (cytosine-5)-methyltransferase (DNMT) catalyzes the transfer of a methyl group from S-adenosyl-L-methionine (SAM) to C5 of cytosine within CpG dinucleotide sequences in the genomic DNA of higher eukaryotes. There is considerable evidence that aberrant DNA methylation plays an integral role in carcinogenesis. Folic acid or folate is crucial for normal DNA synthesis and can regulate DNA methylation, and through this, it affects cellular SAM levels. Folate deficiency results in DNA hypomethylation. Epidemiological studies have indicated that folic acid protects against gastrointestinal (GI) cancers. Methylene-tetrahydrofolate reductase (MTHFR) and methionine synthase (MS) are the enzymes involved in folate metabolism and are thought to influence DNA methylation. MTHFR is highly polymorphic, and the variant genotypes result in decreased MTHFR enzyme activity and lower plasma folate level. Two common MTHFR polymorphisms, 677CT (or 677TT) and A1298C, and an MS polymorphism, A-->G at 2756, have been identified. Most studies support an inverse association between folate status and the rate of colorectal adenomas and carcinomas. During human GI carcinogenesis, MTHFR is highly polymorphic, and the variant genotypes result in decreased MTHFR enzyme activity and lower plasma folate level, as well as aberrant methylation.

  10. On the quantum inverse scattering problem

    International Nuclear Information System (INIS)

    Maillet, J.M.; Terras, V.

    2000-01-01

    A general method for solving the so-called quantum inverse scattering problem (namely the reconstruction of local quantum (field) operators in term of the quantum monodromy matrix satisfying a Yang-Baxter quadratic algebra governed by an R-matrix) for a large class of lattice quantum integrable models is given. The principal requirement being the initial condition (R(0)=P, the permutation operator) for the quantum R-matrix solving the Yang-Baxter equation, it applies not only to most known integrable fundamental lattice models (such as Heisenberg spin chains) but also to lattice models with arbitrary number of impurities and to the so-called fused lattice models (including integrable higher spin generalizations of Heisenberg chains). Our method is then applied to several important examples like the sl n XXZ model, the XYZ spin-((1)/(2)) chain and also to the spin-s Heisenberg chains

  11. Inverse eigenvalue problems for semilinear elliptic equations

    Directory of Open Access Journals (Sweden)

    Tetsutaro Shibata

    2009-09-01

    Full Text Available We consider the inverse nonlinear eigenvalue problem for the equation $$displaylines{ -Delta u + f(u = lambda u, quad u > 0 quad hbox{in } Omega,cr u = 0 quad hbox{on } partialOmega, } where $f(u$ is an unknown nonlinear term, $Omega subset mathbb{R}^N$ is a bounded domain with an appropriate smooth boundary $partialOmega$ and $lambda > 0$ is a parameter. Under basic conditions on $f$, for any given $alpha > 0$, there exists a unique solution $(lambda, u = (lambda(alpha, u_alpha in mathbb{R}_+ imes C^2(ar{Omega}$ with $|u_alpha|_2 = alpha$. The curve $lambda(alpha$ is called the $L^2$-bifurcation branch. Using a variational approach, we show that the nonlinear term $f(u$ is determined uniquely by $lambda(alpha$.

  12. Multipass optical cavity for inverse Compton interactions

    Energy Technology Data Exchange (ETDEWEB)

    Rollason, A.J. E-mail: a.j.rollason@keele.ac.uk; Fang, X.; Dugdale, D.E

    2004-07-01

    The recycling of laser beams in the focal region of non-resonant multipass optical cavities has been investigated as a means of providing a high intensity of photons for weak interaction experiments. Ray-tracing simulations and measurements with an Ar-ion laser have been carried out to examine the intensity profiles of the laser field in different 2-mirror geometries. In particular, the use of such cavities in the generation of X-rays by inverse Compton scattering is considered. X-ray yields are calculated for electron beams of 0.05, 0.1, 0.2 and 0.5 mm diameter yielding enhancement factors of 10-200 compared to a free space laser interaction.

  13. Intermediate simulation of the inverse seismic problem

    International Nuclear Information System (INIS)

    Brolley, J.E.

    1980-03-01

    An introductory study of the inverse seismic problem is performed. The complex cepstrum of a seismogram generated by the convolution of three factors, the Seggern-Blandford source function of an explosion, the Futterman mantle transfer function, and the SRO seismometer transfer function, is used. For a given Q and yield, a synthetic seismogram is computed. Arbitrary values of Q and yield are introduced, and a search is conducted to find that pair of values that minimized the cepstral difference between the original and arbitrary seismograms. The original values are accurately recovered. Spectral and amplitude characteristics of the various factors are presented. Possible application to the problem of studying a medium intervening between a source and receiver is discussed. 25 figures, 1 table

  14. Inverse problems for partial differential equations

    CERN Document Server

    Isakov, Victor

    2017-01-01

    This third edition expands upon the earlier edition by adding nearly 40 pages of new material reflecting the analytical and numerical progress in inverse problems in last 10 years. As in the second edition, the emphasis is on new ideas and methods rather than technical improvements. These new ideas include use of the stationary phase method in the two-dimensional elliptic problems and of multi frequencies\\temporal data to improve stability and numerical resolution. There are also numerous corrections and improvements of the exposition throughout. This book is intended for mathematicians working with partial differential equations and their applications, physicists, geophysicists, and financial, electrical, and mechanical engineers involved with nondestructive evaluation, seismic exploration, remote sensing, and various kinds of tomography. Review of the second edition: "The first edition of this excellent book appeared in 1998 and became a standard reference for everyone interested in analysis and numerics of...

  15. Remarks on inverse scattering in one dimension

    Science.gov (United States)

    Newton, Roger G.

    1984-10-01

    This paper answers the following questions: (1) what are the consequences in the matrix-Marchenko inversion scheme if a given S matrix lacks forward analyticity; and (2) in particular, does the condition known as the miracle depend on forward analyticity, and if not, what properties of S does it depend on? The answers are (1) if the input S matrix lacks forward analyticity then the output S matrix has it anyway, and (2) integrability of kRl,r is sufficient for the miracle to occur. It is also found that the matrix-Marchenko procedure simultaneously constructs the potentials for two scattering problems which differ only by the signs of their reflection coefficients.

  16. Hybrid methods of seismic data inversion

    Science.gov (United States)

    Katz, Simon; Beylin, Alex

    1993-12-01

    A new hybrid method for inversion of reflected seismic waves based on iterative minimization of a cost function has been developed and tested on synthetic data. It includes the following steps: (1) iterative generation of a trial set of wave-forms, (2) construction of the fuzzy neighborhood set for a recorded wave-form in the set of trial wave-forms, (3) fuzzy mapping of the neighborhood set to the space of seismic parameters to produce the fuzzy image of the neighborhood set, and (4) defuzzification of the image set and calculation of the center of the next set of trial wave-forms. The sequence of centers of the trial wave-forms is constructed in such a way that it converges to a global minimum of the cost function.

  17. Directed Neutron Beams From Inverse Kinematic Reactions

    Science.gov (United States)

    Vanhoy, J. R.; Guardala, N. A.; Glass, G. A.

    2011-06-01

    Kinematic focusing of an emitted fairly mono-energetic neutron beam by the use of inverse-kinematic reactions, i.e. where the projectile mass is greater than the target atom's mass, can provide for the utilization of a significant fraction of the fast neutron yield and also provide for a safer radiation environment. We examine the merit of various neutron production reactions and consider the practicalities of producing the primary beam using the suitable accelerator technologies. Preliminary progress at the NSWC-Carderock Positive Ion Accelerator Facility is described. Possible important applications for this type of neutron-based system can be both advanced medical imaging techniques and active "stand-off" interrogation of contraband items.

  18. Producing a steady-state population inversion

    International Nuclear Information System (INIS)

    Richards, R.K.; Griffin, D.C.

    1986-03-01

    An observed steady-state transition at 17.5 nm is identified as the 2p 5 3s3p 4 S/sub 3/2/ → 2p 6 3p 2 P/sub 3/2/ transition in Na-like aluminum. The upper level is populated by electron inner shell ionization of metastable Mg-like aluminum. From the emission intensity, the rate coefficient for populating the upper level is calculated to be approximately 5 x 10 -10 ) cm 3 /sec. Since the upper level is quasimetastable with a lifetime 22 times longer than the lower level, it may be possible to produce a population inversion, if a competing process to populate the lower level can be reduced

  19. Incomplete Sparse Approximate Inverses for Parallel Preconditioning

    International Nuclear Information System (INIS)

    Anzt, Hartwig; University of Tennessee, Knoxville, TN; Huckle, Thomas K.; Bräckle, Jürgen; Dongarra, Jack

    2017-01-01

    In this study, we propose a new preconditioning method that can be seen as a generalization of block-Jacobi methods, or as a simplification of the sparse approximate inverse (SAI) preconditioners. The “Incomplete Sparse Approximate Inverses” (ISAI) is in particular efficient in the solution of sparse triangular linear systems of equations. Those arise, for example, in the context of incomplete factorization preconditioning. ISAI preconditioners can be generated via an algorithm providing fine-grained parallelism, which makes them attractive for hardware with a high concurrency level. Finally, in a study covering a large number of matrices, we identify the ISAI preconditioner as an attractive alternative to exact triangular solves in the context of incomplete factorization preconditioning.

  20. Numerical Methods for Bayesian Inverse Problems

    KAUST Repository

    Ernst, Oliver

    2014-01-06

    We present recent results on Bayesian inversion for a groundwater flow problem with an uncertain conductivity field. In particular, we show how direct and indirect measurements can be used to obtain a stochastic model for the unknown. The main tool here is Bayes’ theorem which merges the indirect data with the stochastic prior model for the conductivity field obtained by the direct measurements. Further, we demonstrate how the resulting posterior distribution of the quantity of interest, in this case travel times of radionuclide contaminants, can be obtained by Markov Chain Monte Carlo (MCMC) simulations. Moreover, we investigate new, promising MCMC methods which exploit geometrical features of the posterior and which are suited to infinite dimensions.

  1. Confidence bands for inverse regression models

    International Nuclear Information System (INIS)

    Birke, Melanie; Bissantz, Nicolai; Holzmann, Hajo

    2010-01-01

    We construct uniform confidence bands for the regression function in inverse, homoscedastic regression models with convolution-type operators. Here, the convolution is between two non-periodic functions on the whole real line rather than between two periodic functions on a compact interval, since the former situation arguably arises more often in applications. First, following Bickel and Rosenblatt (1973 Ann. Stat. 1 1071–95) we construct asymptotic confidence bands which are based on strong approximations and on a limit theorem for the supremum of a stationary Gaussian process. Further, we propose bootstrap confidence bands based on the residual bootstrap and prove consistency of the bootstrap procedure. A simulation study shows that the bootstrap confidence bands perform reasonably well for moderate sample sizes. Finally, we apply our method to data from a gel electrophoresis experiment with genetically engineered neuronal receptor subunits incubated with rat brain extract

  2. The inverse problem for Schwinger pair production

    Directory of Open Access Journals (Sweden)

    F. Hebenstreit

    2016-02-01

    Full Text Available The production of electron–positron pairs in time-dependent electric fields (Schwinger mechanism depends non-linearly on the applied field profile. Accordingly, the resulting momentum spectrum is extremely sensitive to small variations of the field parameters. Owing to this non-linear dependence it is so far unpredictable how to choose a field configuration such that a predetermined momentum distribution is generated. We show that quantum kinetic theory along with optimal control theory can be used to approximately solve this inverse problem for Schwinger pair production. We exemplify this by studying the superposition of a small number of harmonic components resulting in predetermined signatures in the asymptotic momentum spectrum. In the long run, our results could facilitate the observation of this yet unobserved pair production mechanism in quantum electrodynamics by providing suggestions for tailored field configurations.

  3. Investigation of drug polymorphism: Case of artemisinin

    International Nuclear Information System (INIS)

    Horosanskaia, E.; Seidel-Morgenstern, A.; Lorenz, H.

    2014-01-01

    Highlights: • The Artemisinin dimorphic system was found to be enantiotropic. • The Orthorhombic modification is the form stable at low-temperatures and the triclinic modification the form stable at high-temperatures. • The polymorphic phase transition occurs at ∼130 °C. - Abstract: The polymorphism of the anti-malarial compound artemisinin was examined. The phase behavior of solid artemisinin has experimentally been investigated using differential scanning calorimetry and temperature-resolved X-Ray powder diffraction. In addition, complementary solution studies and suspension experiments were performed. The results clearly confirm the existence of two modifications of artemisinin, which are related enantiotropically. The orthorhombic modification is the thermodynamically stable form at low temperatures, while the triclinic form is the stable one at higher temperatures with a transition temperature of ∼130 °C. Problems associated with analysis of the polymorphic phase behavior are comprehensively addressed

  4. 2-(4-Fluorobenzylidenepropanedinitrile: monoclinic polymorph

    Directory of Open Access Journals (Sweden)

    Ahmed M. El-Agrody

    2013-04-01

    Full Text Available The title compound, C10H5FN2, is a monoclinic (P21/c polymorph of the previously reported triclinic (P-1 form [Antipin et al. (2003. J. Mol. Struct. 650, 1–20]. The 13 non-H atoms in the title polymorph are almost coplanar (r.m.s. deviation = 0.020 Å; a small twist between the fluorobenzene and dinitrile groups [C—C—C—C torsion angle = 175.49 (16°] is evident in the triclinic polymorph. In the crystal, C—H...N interactions lead to supramolecular layers parallel to (-101; these are connected by C—F...π interactions.

  5. Prediction of serotonin transporter promoter polymorphism genotypes from single nucleotide polymorphism arrays using machine learning methods.

    Science.gov (United States)

    Lu, Ake Tzu-Hui; Bakker, Steven; Janson, Esther; Cichon, Sven; Cantor, Rita M; Ophoff, Roel A

    2012-08-01

    The serotonin transporter gene (SLC6A4) and its promoter (5-HTTLPR) polymorphism have been the focus of a large number of association studies of behavioral traits and psychiatric disorders. However, large-scale genotyping of the polymorphism has been very difficult. We report the development and validation of a 5-HTTLPR genotype prediction model. The single nucleotide polymorphisms (SNPs) from the 2000 kb region surrounding 5-HTTLPR were used to construct a prediction model through a newly developed machine learning method, multicategory vertex discriminant analysis with 2147 individuals from the Northern Finnish Birth Cohort genotyped with the Illumina 370K SNP array and manually genotyped for 5-HTTLPR polymorphism. The prediction model was applied to SNP genotypes in a Dutch/German schizophrenia case-control sample of 3318 individuals to test the association of the polymorphism with schizophrenia. The prediction model of eight SNPs achieved a 92.4% accuracy rate and a 0.98±0.01 area under the receiving operating characteristic. Evidence for an association of the polymorphism with schizophrenia was observed (P=0.05, odds ratio=1.105). This prediction model provides an effective substitute of manually genotyped 5-HTTLPR alleles, providing a new approach for large scale association studies of this polymorphism.

  6. Direct Waveform Inversion: a New Recursive Scheme

    Science.gov (United States)

    Zheng, Y.

    2015-12-01

    The goal of the full-waveform inversion (FWI) is to find an Earth's model such that the synthetic waveforms computed using the model fit the observed ones. In practice, such a model is found in the context of the perturbation approach in an iterative fashion. Specifically, to find such a model, one starts from an initial global velocity model and perform model updating iteratively based on the Frechet derivative or single scattering by adjoint methods to minimize some cost function. However, this process often leads to local minima for the nonlinear cost function in the optimization and slow or no convergence when the starting model is far from the true model. To solve for the initial-model dependence and the convergence issue, we show a new direct waveform inversion (DWI) idea to directly invert the waveform data recursively by explicitly enforcing the causality principle. The DWI offers the advantage of assuming no global initial model and no iteration is needed for the model updating. Starting from the source-receiver region, the DWI builds the model outward recursively by fitting the earliest part of the reflection waveforms and the DWI process is always convergent. The DWI combines seismic imaging and velocity model building into one single process and this is in contrast to many industrial applications where seismic imaging/migration and velocity modeling building are done alternatively. The DWI idea is applicable to one-, two-, and three-dimensional spaces. We show numerical examples to support our idea using full waveform data including both free-surface and inter-bed multiples. Using reflection seismic data, we show that the DWI can invert for both velocity and density, separately.

  7. The inverse gravimetric problem in gravity modelling

    Science.gov (United States)

    Sanso, F.; Tscherning, C. C.

    1989-01-01

    One of the main purposes of geodesy is to determine the gravity field of the Earth in the space outside its physical surface. This purpose can be pursued without any particular knowledge of the internal density even if the exact shape of the physical surface of the Earth is not known, though this seems to entangle the two domains, as it was in the old Stoke's theory before the appearance of Molodensky's approach. Nevertheless, even when large, dense and homogeneous data sets are available, it was always recognized that subtracting from the gravity field the effect of the outer layer of the masses (topographic effect) yields a much smoother field. This is obviously more important when a sparse data set is bad so that any smoothing of the gravity field helps in interpolating between the data without raising the modeling error, this approach is generally followed because it has become very cheap in terms of computing time since the appearance of spectral techniques. The mathematical description of the Inverse Gravimetric Problem (IGP) is dominated mainly by two principles, which in loose terms can be formulated as follows: the knowledge of the external gravity field determines mainly the lateral variations of the density; and the deeper the density anomaly giving rise to a gravity anomaly, the more improperly posed is the problem of recovering the former from the latter. The statistical relation between rho and n (and its inverse) is also investigated in its general form, proving that degree cross-covariances have to be introduced to describe the behavior of rho. The problem of the simultaneous estimate of a spherical anomalous potential and of the external, topographic masses is addressed criticizing the choice of the mixed collection approach.

  8. Stochastic inverse problems: Models and metrics

    International Nuclear Information System (INIS)

    Sabbagh, Elias H.; Sabbagh, Harold A.; Murphy, R. Kim; Aldrin, John C.; Annis, Charles; Knopp, Jeremy S.

    2015-01-01

    In past work, we introduced model-based inverse methods, and applied them to problems in which the anomaly could be reasonably modeled by simple canonical shapes, such as rectangular solids. In these cases the parameters to be inverted would be length, width and height, as well as the occasional probe lift-off or rotation. We are now developing a formulation that allows more flexibility in modeling complex flaws. The idea consists of expanding the flaw in a sequence of basis functions, and then solving for the expansion coefficients of this sequence, which are modeled as independent random variables, uniformly distributed over their range of values. There are a number of applications of such modeling: 1. Connected cracks and multiple half-moons, which we have noted in a POD set. Ideally we would like to distinguish connected cracks from one long shallow crack. 2. Cracks of irregular profile and shape which have appeared in cold work holes during bolt-hole eddy-current inspection. One side of such cracks is much deeper than other. 3. L or C shaped crack profiles at the surface, examples of which have been seen in bolt-hole cracks. By formulating problems in a stochastic sense, we are able to leverage the stochastic global optimization algorithms in NLSE, which is resident in VIC-3D®, to answer questions of global minimization and to compute confidence bounds using the sensitivity coefficient that we get from NLSE. We will also address the issue of surrogate functions which are used during the inversion process, and how they contribute to the quality of the estimation of the bounds

  9. Stochastic inverse problems: Models and metrics

    Science.gov (United States)

    Sabbagh, Elias H.; Sabbagh, Harold A.; Murphy, R. Kim; Aldrin, John C.; Annis, Charles; Knopp, Jeremy S.

    2015-03-01

    In past work, we introduced model-based inverse methods, and applied them to problems in which the anomaly could be reasonably modeled by simple canonical shapes, such as rectangular solids. In these cases the parameters to be inverted would be length, width and height, as well as the occasional probe lift-off or rotation. We are now developing a formulation that allows more flexibility in modeling complex flaws. The idea consists of expanding the flaw in a sequence of basis functions, and then solving for the expansion coefficients of this sequence, which are modeled as independent random variables, uniformly distributed over their range of values. There are a number of applications of such modeling: 1. Connected cracks and multiple half-moons, which we have noted in a POD set. Ideally we would like to distinguish connected cracks from one long shallow crack. 2. Cracks of irregular profile and shape which have appeared in cold work holes during bolt-hole eddy-current inspection. One side of such cracks is much deeper than other. 3. L or C shaped crack profiles at the surface, examples of which have been seen in bolt-hole cracks. By formulating problems in a stochastic sense, we are able to leverage the stochastic global optimization algorithms in NLSE, which is resident in VIC-3D®, to answer questions of global minimization and to compute confidence bounds using the sensitivity coefficient that we get from NLSE. We will also address the issue of surrogate functions which are used during the inversion process, and how they contribute to the quality of the estimation of the bounds.

  10. Full waveform inversion of solar interior flows

    Energy Technology Data Exchange (ETDEWEB)

    Hanasoge, Shravan M. [Department of Astronomy and Astrophysics, Tata Institute of Fundamental Research, Mumbai 400005 (India)

    2014-12-10

    The inference of flows of material in the interior of the Sun is a subject of major interest in helioseismology. Here, we apply techniques of full waveform inversion (FWI) to synthetic data to test flow inversions. In this idealized setup, we do not model seismic realization noise, training the focus entirely on the problem of whether a chosen supergranulation flow model can be seismically recovered. We define the misfit functional as a sum of L {sub 2} norm deviations in travel times between prediction and observation, as measured using short-distance filtered f and p {sub 1} and large-distance unfiltered p modes. FWI allows for the introduction of measurements of choice and iteratively improving the background model, while monitoring the evolution of the misfit in all desired categories. Although the misfit is seen to uniformly reduce in all categories, convergence to the true model is very slow, possibly because it is trapped in a local minimum. The primary source of error is inaccurate depth localization, which, due to density stratification, leads to wrong ratios of horizontal and vertical flow velocities ({sup c}ross talk{sup )}. In the present formulation, the lack of sufficient temporal frequency and spatial resolution makes it difficult to accurately localize flow profiles at depth. We therefore suggest that the most efficient way to discover the global minimum is to perform a probabilistic forward search, involving calculating the misfit associated with a broad range of models (generated, for instance, by a Monte Carlo algorithm) and locating the deepest minimum. Such techniques possess the added advantage of being able to quantify model uncertainty as well as realization noise (data uncertainty).

  11. Neural learning of robot inverse kinematics transformations

    Science.gov (United States)

    Gupta, M. M.

    1994-06-01

    The accuracy of a robot arm is determined by its ability to move in a given particular task space to specific Cartesian positions that are not necessarily pretaught. As a consequence, the inverse kinematics is an important problem as it must be solved in real-time in order to position the end-effector at an appropriate Cartesian location. However, it is a difficult and challenging problem for it involves the determination whether or not at least one mathematical set of robot joint angle values exists that will produce a desired coordinate configuration. The mathematical solutions should be checked against the physical constraints associated with the manipulator. Many times, a solution many not be physically realizable in a constrained environment. The advent of artificial neural networks has made it possible to obtain general learning schemes which can be used to arrive at feasible solutions to inverse kinematics problem in a constrained environment independent of a robotic structure. In this paper, we present such a learning scheme using a dynamic neural processor (DNP). This neural model functionally mimics the subpopulation of biological neurons. For analytical simplicity, only two subpopulations of neurons, namely excitatory and inhibitory, are assumed to coexist. The DNP is a neural network structure consisting of two dynamic neural units coupled as excitatory and inhibitory neurons. It is demonstrated in this study that the DNP would avoid time consuming numerical calculations and provide, more or less, instant recall of the learned associations. The learning and adaptive nature of this neural approach is demonstrated for two- and three-linked robots.

  12. Sensitivity analysis of distributed volcanic source inversion

    Science.gov (United States)

    Cannavo', Flavio; Camacho, Antonio G.; González, Pablo J.; Puglisi, Giuseppe; Fernández, José

    2016-04-01

    A recently proposed algorithm (Camacho et al., 2011) claims to rapidly estimate magmatic sources from surface geodetic data without any a priori assumption about source geometry. The algorithm takes the advantages of fast calculation from the analytical models and adds the capability to model free-shape distributed sources. Assuming homogenous elastic conditions, the approach can determine general geometrical configurations of pressured and/or density source and/or sliding structures corresponding to prescribed values of anomalous density, pressure and slip. These source bodies are described as aggregation of elemental point sources for pressure, density and slip, and they fit the whole data (keeping some 3D regularity conditions). Although some examples and applications have been already presented to demonstrate the ability of the algorithm in reconstructing a magma pressure source (e.g. Camacho et al., 2011,Cannavò et al., 2015), a systematic analysis of sensitivity and reliability of the algorithm is still lacking. In this explorative work we present results from a large statistical test designed to evaluate the advantages and limitations of the methodology by assessing its sensitivity to the free and constrained parameters involved in inversions. In particular, besides the source parameters, we focused on the ground deformation network topology, and noise in measurements. The proposed analysis can be used for a better interpretation of the algorithm results in real-case applications. Camacho, A. G., González, P. J., Fernández, J. & Berrino, G. (2011) Simultaneous inversion of surface deformation and gravity changes by means of extended bodies with a free geometry: Application to deforming calderas. J. Geophys. Res. 116. Cannavò F., Camacho A.G., González P.J., Mattia M., Puglisi G., Fernández J. (2015) Real Time Tracking of Magmatic Intrusions by means of Ground Deformation Modeling during Volcanic Crises, Scientific Reports, 5 (10970) doi:10.1038/srep

  13. Advances in Global Full Waveform Inversion

    Science.gov (United States)

    Tromp, J.; Bozdag, E.; Lei, W.; Ruan, Y.; Lefebvre, M. P.; Modrak, R. T.; Orsvuran, R.; Smith, J. A.; Komatitsch, D.; Peter, D. B.

    2017-12-01

    Information about Earth's interior comes from seismograms recorded at its surface. Seismic imaging based on spectral-element and adjoint methods has enabled assimilation of this information for the construction of 3D (an)elastic Earth models. These methods account for the physics of wave excitation and propagation by numerically solving the equations of motion, and require the execution of complex computational procedures that challenge the most advanced high-performance computing systems. Current research is petascale; future research will require exascale capabilities. The inverse problem consists of reconstructing the characteristics of the medium from -often noisy- observations. A nonlinear functional is minimized, which involves both the misfit to the measurements and a Tikhonov-type regularization term to tackle inherent ill-posedness. Achieving scalability for the inversion process on tens of thousands of multicore processors is a task that offers many research challenges. We initiated global "adjoint tomography" using 253 earthquakes and produced the first-generation model named GLAD-M15, with a transversely isotropic model parameterization. We are currently running iterations for a second-generation anisotropic model based on the same 253 events. In parallel, we continue iterations for a transversely isotropic model with a larger dataset of 1,040 events to determine higher-resolution plume and slab images. A significant part of our research has focused on eliminating I/O bottlenecks in the adjoint tomography workflow. This has led to the development of a new Adaptable Seismic Data Format based on HDF5, and post-processing tools based on the ADIOS library developed by Oak Ridge National Laboratory. We use the Ensemble Toolkit for workflow stabilization & management to automate the workflow with minimal human interaction.

  14. Towards full waveform ambient noise inversion

    Science.gov (United States)

    Sager, Korbinian; Ermert, Laura; Boehm, Christian; Fichtner, Andreas

    2018-01-01

    In this work we investigate fundamentals of a method—referred to as full waveform ambient noise inversion—that improves the resolution of tomographic images by extracting waveform information from interstation correlation functions that cannot be used without knowing the distribution of noise sources. The fundamental idea is to drop the principle of Green function retrieval and to establish correlation functions as self-consistent observables in seismology. This involves the following steps: (1) We introduce an operator-based formulation of the forward problem of computing correlation functions. It is valid for arbitrary distributions of noise sources in both space and frequency, and for any type of medium, including 3-D elastic, heterogeneous and attenuating media. In addition, the formulation allows us to keep the derivations independent of time and frequency domain and it facilitates the application of adjoint techniques, which we use to derive efficient expressions to compute first and also second derivatives. The latter are essential for a resolution analysis that accounts for intra- and interparameter trade-offs. (2) In a forward modelling study we investigate the effect of noise sources and structure on different observables. Traveltimes are hardly affected by heterogeneous noise source distributions. On the other hand, the amplitude asymmetry of correlations is at least to first order insensitive to unmodelled Earth structure. Energy and waveform differences are sensitive to both structure and the distribution of noise sources. (3) We design and implement an appropriate inversion scheme, where the extraction of waveform information is successively increased. We demonstrate that full waveform ambient noise inversion has the potential to go beyond ambient noise tomography based on Green function retrieval and to refine noise source location, which is essential for a better understanding of noise generation. Inherent trade-offs between source and structure

  15. Stochastic inverse problems: Models and metrics

    Energy Technology Data Exchange (ETDEWEB)

    Sabbagh, Elias H.; Sabbagh, Harold A.; Murphy, R. Kim [Victor Technologies, LLC, Bloomington, IN 47407-7706 (United States); Aldrin, John C. [Computational Tools, Gurnee, IL 60031 (United States); Annis, Charles [Statistical Engineering, Palm Beach Gardens, FL 33418 (United States); Knopp, Jeremy S. [Air Force Research Laboratory (AFRL/RXCA), Wright Patterson AFB, OH 45433-7817 (United States)

    2015-03-31

    In past work, we introduced model-based inverse methods, and applied them to problems in which the anomaly could be reasonably modeled by simple canonical shapes, such as rectangular solids. In these cases the parameters to be inverted would be length, width and height, as well as the occasional probe lift-off or rotation. We are now developing a formulation that allows more flexibility in modeling complex flaws. The idea consists of expanding the flaw in a sequence of basis functions, and then solving for the expansion coefficients of this sequence, which are modeled as independent random variables, uniformly distributed over their range of values. There are a number of applications of such modeling: 1. Connected cracks and multiple half-moons, which we have noted in a POD set. Ideally we would like to distinguish connected cracks from one long shallow crack. 2. Cracks of irregular profile and shape which have appeared in cold work holes during bolt-hole eddy-current inspection. One side of such cracks is much deeper than other. 3. L or C shaped crack profiles at the surface, examples of which have been seen in bolt-hole cracks. By formulating problems in a stochastic sense, we are able to leverage the stochastic global optimization algorithms in NLSE, which is resident in VIC-3D®, to answer questions of global minimization and to compute confidence bounds using the sensitivity coefficient that we get from NLSE. We will also address the issue of surrogate functions which are used during the inversion process, and how they contribute to the quality of the estimation of the bounds.

  16. Unwrapped phase inversion for near surface seismic data

    KAUST Repository

    Choi, Yun Seok

    2012-11-04

    The Phase-wrapping is one of the main obstacles of waveform inversion. We use an inversion algorithm based on the instantaneous-traveltime that overcomes the phase-wrapping problem. With a high damping factor, the frequency-dependent instantaneous-traveltime inversion provides the stability of refraction tomography, with higher resolution results, and no arrival picking involved. We apply the instantaneous-traveltime inversion to the synthetic data generated by the elastic time-domain modeling. The synthetic data is a representative of the near surface seismic data. Although the inversion algorithm is based on the acoustic wave equation, the numerical examples show that the instantaneous-traveltime inversion generates a convergent velocity model, very similar to what we see from traveltime tomography.

  17. Single crystal and powder diffraction characterization of three polymorphic forms of Acitretin.

    Science.gov (United States)

    Malpezzi, Luciana; Magnone, Grato Angelo; Masciocchi, Norberto; Sironi, Angelo

    2005-05-01

    Acitretin [all-trans-9-(4-methoxy-2,3,6-trimethylphenyl)-3,7-dimethyl-2,4,6,8-nonatetraenoic acid or 3-methoxy-2-methyl-17-nor-1,2,3,4-tetradehydroretinoic acid], a widely marketed oral synthetic retinoid, introduced for clinical use as effective therapy against psoriasis, was found to crystallize in three polymorphic modifications (hereafter, I, II, and III), the crystal structures of which have been determined by single-crystal diffractometry (form I) or X-ray powder diffraction methods (form II and III) from conventional laboratory data only. In these latter cases, real space techniques (simulated annealing and whole-profile pattern matching) have been employed. Polymorph I crystallizes in space group P2(1), Z = 8, with unit cell parameters a = 7.894(1), b = 58.454(6), c = 8.161(1) angstroms, beta = 102.04(1) degrees, and V = 3682.9(8) angstroms3. Polymorph II crystallizes in space group P2(1)/n, Z = 4, with unit cell parameters a = 13.999(2), b = 10.714(1), c = 12.465(2) angstroms, beta = 98.76(5) degrees, and V = 1847.9(3) angstroms3. Polymorph III crystallizes in space group P2(1)/c, Z = 4, with unit cell parameters a = 3.0751(4), b = 4.0487(4), c = 14.956(2) angstroms, beta = 100.41(7) degrees, and V = 1831.3(4) angstroms3. Polymorph I, found to be identical with that deposited in the European Pharmacopeia, shows four crystallographically independent Acitretin molecules, arranged in pairs through conventional hydrogen-bonded carboxylic dimers; also in form II, carboxylic dimers are observed, located on crystallographic inversion centres, while in form III, a catameric arrangement of the carboxylic residues, winding up about the rather short monoclinic axis, generates one-dimensional chains of hydrogen-bonded Acitretin molecules. Thermal analysis showed that form I can be quantitatively transformed into form II by moderate heating near 200 degrees C, under vacuum. These results show that ab initio structural studies from conventional laboratory X-ray powder

  18. Genetic polymorphism of enzymes involved in xenobiotic metabolism and the risk of colorectal cancer.

    Science.gov (United States)

    Kiyohara, C

    2000-09-01

    published studies suggested that the mutant genotype of MTHFR inversely slightly associated with colorectal cancer. Although some of genetic polymorphisms discussed here have not shown statistically significant increase/decrease in risk, individuals with differing genotypes may have different susceptibilities to colorectal cancer, based on environmental factors. Further studies are needed to identify risk groups more specific and to determine factors of importance in colorectal cancer development.

  19. The common polymorphism of apolipoprotein E

    DEFF Research Database (Denmark)

    Gerdes, Ulrik

    2003-01-01

    Apolipoprotein E (apoE) has important functions in systemic and local lipid transport, but also has other functions. The gene (APOE) shows a common polymorphism with three alleles--APOE*2, APOE*3, and APOE*4. Their frequencies vary substantially around the world, but APOE*3 is the most common...... from only 10-15% in southern Europe to 40-50% in the north. The gradient may be a trace of the demic expansion of agriculture that began about 10,000 years ago, but it may also reflect the possibility that APOE*4 carriers are less likely to develop vitamin D deficiency. The common APOE polymorphism...

  20. Formation of Piroxicam Polymorphism in Solution Crystallization

    DEFF Research Database (Denmark)

    Bruun Hansen, Thomas; Qu, Haiyan

    2015-01-01

    Recently, new insights into crystallization prior to actual nucleation have shown interesting results for drugs showing differences in hydrogen bonding or orientation in various polymorphic forms. On the basis of this concept, piroxicam was chosen as a model compound because the two common forms, I...... also explored, and new insights into polymorphic control are documented and discussed. The crystal landscape was mapped for cooling crystallization of piroxicam from acetone/water mixtures (0.5 K/min) and for antisolvent crystallization from acetone with water as the antisolvent. Varying cooling rates...

  1. Polymorphic transformation of helical flagella of bacteria

    Science.gov (United States)

    Lim, Sookkyung; Howard Berg Collaboration; William Ko Collaboration; Yongsam Kim Collaboration; Wanho Lee Collaboration; Charles Peskin Collaboration

    2016-11-01

    Bacteria such as E. coli swim in an aqueous environment by utilizing the rotation of flagellar motors and alternate two modes of motility, runs and tumbles. Runs are steady forward swimming driven by bundles of flagellar filaments whose motors are turning CCW; tumbles involve a reorientation of the direction of swimming triggered by motor reversals. During tumbling, the helical flagellum undergoes polymorphic transformations, which is a local change in helical pitch, helical radius, and handedness. In this work, we investigate the underlying mechanism of structural conformation and how this polymorphic transition plays a role in bacterial swimming. National Science Foundation.

  2. Glutathione S-transferase P1 gene polymorphisms and susceptibility ...

    Indian Academy of Sciences (India)

    matched and ethnicity-matched healthy controls (n = 200) were genotyped for polymorphisms in GSTP1 using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. Genotype distribution of g.313A>G and ...

  3. Presentation: 3D magnetic inversion by planting anomalous densities

    OpenAIRE

    Uieda, Leonardo; Barbosa, Valeria C. F.

    2013-01-01

    Slides for the presentation "3D magnetic inversion by planting anomalous densities" given at the 2013 AGU Meeting of the Americas in Cancun, Mexico.   Note: There was an error in the title of the talk. The correct title should be "3D magnetic inversion by planting anomalous magnetization"   Abstract: We present a new 3D magnetic inversion algorithm based on the computationally efficient method of planting anomalous densities. The algorithm consists of an iterative growth of the an...

  4. n-Colour even self-inverse compositions

    Indian Academy of Sciences (India)

    Agarwal [6] defined an n-colour self-inverse composition as follows: DEFINITION 1.2 [6]. An n-colour composition whose parts read from left to right are identical with when read from right to left and is called an n-colour self-inverse composition. Thus, for example there are 8 n-colour self-inverse compositions of 4, viz.,.

  5. Large-Scale Inverse Problems and Quantification of Uncertainty

    CERN Document Server

    Biegler, Lorenz; Ghattas, Omar

    2010-01-01

    Large-scale inverse problems and associated uncertainty quantification has become an important area of research, central to a wide range of science and engineering applications. Written by leading experts in the field, Large-scale Inverse Problems and Quantification of Uncertainty focuses on the computational methods used to analyze and simulate inverse problems. The text provides PhD students, researchers, advanced undergraduate students, and engineering practitioners with the perspectives of researchers in areas of inverse problems and data assimilation, ranging from statistics and large-sca

  6. Understanding the inverse magnetocaloric effect in antiferro- and ferrimagnetic arrangements

    International Nuclear Information System (INIS)

    Von Ranke, P J; De Oliveira, N A; Alho, B P; Plaza, E J R; De Sousa, V S R; Caron, L; Reis, M S

    2009-01-01

    The inverse magnetocaloric effect occurs when a magnetic material cools down under applied magnetic field in an adiabatic process. Although the existence of the inverse magnetocaloric effect was recently reported experimentally, a theoretical microscopic description is almost nonexistent. In this paper we theoretically describe the inverse magnetocaloric effect in antiferro- and ferrimagnetic systems. The inverse magnetocaloric effects were systematically investigated as a function of the model parameters. The influence of the Neel and the compensation temperature on the magnetocaloric effect is also analyzed using a microscopic model.

  7. Aftermath of Ankle Inversion Injuries: Spectrum of MR Imaging Findings.

    Science.gov (United States)

    Meehan, Timothy M; Martinez-Salazar, Edgar Leonardo; Torriani, Martin

    2017-02-01

    Acute and chronic ankle inversion injuries are a common source of pain and a diagnostic challenge. Several studies have shown a variety of injury patterns after inversion injury both in acute and chronic settings. Although traditional assessment with clinical examination and radiographs is generally accepted for inversion injuries, MR imaging is a useful tool to detect occult injuries and in patients with chronic symptoms. This article examines a range of MR imaging findings that may be present in patients with lateral ankle pain following an acute or chronic inversion injury. Copyright © 2016 Elsevier Inc. All rights reserved.

  8. Level 1.5 Almucantar Inversion Products Phase Functions

    Data.gov (United States)

    National Aeronautics and Space Administration — AERONET inversion code provides aerosoloptical properties in the total atmospheric column derived from the direct and diffuse radiation measured byAERONETCimel...

  9. Level 2.0 Almucantar Inversion Products Phase Functions

    Data.gov (United States)

    National Aeronautics and Space Administration — AERONET inversion code provides aerosoloptical properties in the total atmospheric column derived from the direct and diffuse radiation measured byAERONETCimel...

  10. Chromatid Painting for Chromosomal Inversion Detection, Phase II

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose the continued development of a novel approach to the detection of chromosomal inversions. Transmissible chromosome aberrations (translocations and...

  11. Pericentric inversion of chromosome 12; a three family study

    DEFF Research Database (Denmark)

    Haagerup, A; Hertz, Jens Michael

    1992-01-01

    A pericentric inversion of chromosome 12 has been followed in three large independently ascertained Danish families. Out of a total number of 52 persons examined, 25 were found to carry the inversion. The breakpoints in all three families were localized to p13 and q13, resulting in more than one...... rate is calculated to be 0.58, which is not significantly different from an expected segregation rate of 0.5. In family 3, an additional inversion of a chromosome 9 has been found in 4 individuals. Our results are discussed in relation to previous findings and with respect to the genetic counselling...... of families with pericentric inversions....

  12. Level 2.0 Almucantar Inversion Products (except phase functions)

    Data.gov (United States)

    National Aeronautics and Space Administration — AERONET inversion code provides aerosoloptical properties in the total atmospheric column derived from the direct and diffuse radiation measured byAERONETCimel...

  13. Level 1.5 Almucantar Inversion Products (except phase functions)

    Data.gov (United States)

    National Aeronautics and Space Administration — AERONET inversion code provides aerosoloptical properties in the total atmospheric column derived from the direct and diffuse radiation measured byAERONETCimel...

  14. Surface layer temperature inversion in the Arabian Sea during winter

    Digital Repository Service at National Institute of Oceanography (India)

    Pankajakshan, T.; Ghosh, A.K.

    picture of the actual inversion phenomena occurring in this area. Figure 1 illustrates the procedure adopted in finding the inversion stations. If the temperature difference (Del T) obtained from (T U –T L ) is greater than 0.2°C, then the station... is more or less consistent. Figure 3-A shows the frequency distribution of temperature difference of the inversion layer (Del T). Figure 3-B shows the frequency distribution of the thickness of the inversion layers in meters (Di). Del T is distributed over...

  15. Understanding the inverse magnetocaloric effect in antiferro- and ferrimagnetic arrangements

    Energy Technology Data Exchange (ETDEWEB)

    Von Ranke, P J; De Oliveira, N A; Alho, B P; Plaza, E J R; De Sousa, V S R [Instituto de Fisica ' Armando Dias Tavares' , Universidade do Estado do Rio de Janeiro-UERJ, Rua Sao Francisco Xavier, 524, 20550-013, RJ (Brazil); Caron, L [Instituto de Fisica ' Gleb Wataghin' , Universidade Estadual de Campinas-UNICAMP, 13083-970 Campinas, SP (Brazil); Reis, M S [CICECO, Universidade de Aveiro, 3810-193 Aveiro (Portugal)], E-mail: von.ranke@uol.com.br

    2009-02-04

    The inverse magnetocaloric effect occurs when a magnetic material cools down under applied magnetic field in an adiabatic process. Although the existence of the inverse magnetocaloric effect was recently reported experimentally, a theoretical microscopic description is almost nonexistent. In this paper we theoretically describe the inverse magnetocaloric effect in antiferro- and ferrimagnetic systems. The inverse magnetocaloric effects were systematically investigated as a function of the model parameters. The influence of the Neel and the compensation temperature on the magnetocaloric effect is also analyzed using a microscopic model.

  16. Source-independent elastic waveform inversion using a logarithmic wavefield

    KAUST Repository

    Choi, Yun Seok

    2012-01-01

    The logarithmic waveform inversion has been widely developed and applied to some synthetic and real data. In most logarithmic waveform inversion algorithms, the subsurface velocities are updated along with the source estimation. To avoid estimating the source wavelet in the logarithmic waveform inversion, we developed a source-independent logarithmic waveform inversion algorithm. In this inversion algorithm, we first normalize the wavefields with the reference wavefield to remove the source wavelet, and then take the logarithm of the normalized wavefields. Based on the properties of the logarithm, we define three types of misfit functions using the following methods: combination of amplitude and phase, amplitude-only, and phase-only. In the inversion, the gradient is computed using the back-propagation formula without directly calculating the Jacobian matrix. We apply our algorithm to noise-free and noise-added synthetic data generated for the modified version of elastic Marmousi2 model, and compare the results with those of the source-estimation logarithmic waveform inversion. For the noise-free data, the source-independent algorithms yield velocity models close to true velocity models. For random-noise data, the source-estimation logarithmic waveform inversion yields better results than the source-independent method, whereas for coherent-noise data, the results are reversed. Numerical results show that the source-independent and source-estimation logarithmic waveform inversion methods have their own merits for random- and coherent-noise data. © 2011.

  17. Group inverses of M-matrices and their applications

    CERN Document Server

    Kirkland, Stephen J

    2013-01-01

    Group inverses for singular M-matrices are useful tools not only in matrix analysis, but also in the analysis of stochastic processes, graph theory, electrical networks, and demographic models. Group Inverses of M-Matrices and Their Applications highlights the importance and utility of the group inverses of M-matrices in several application areas. After introducing sample problems associated with Leslie matrices and stochastic matrices, the authors develop the basic algebraic and spectral properties of the group inverse of a general matrix. They then derive formulas for derivatives of matrix f

  18. 3D stochastic inversion and joint inversion of potential fields for multi scale parameters

    Science.gov (United States)

    Shamsipour, Pejman

    In this thesis we present the development of new techniques for the interpretation of potential field (gravity and magnetic data), which are the most widespread economic geophysical methods used for oil and mineral exploration. These new techniques help to address the long-standing issue with the interpretation of potential fields, namely the intrinsic non-uniqueness inversion of these types of data. The thesis takes the form of three papers (four including Appendix), which have been published, or soon to be published, in respected international journals. The purpose of the thesis is to introduce new methods based on 3D stochastical approaches for: 1) Inversion of potential field data (magnetic), 2) Multiscale Inversion using surface and borehole data and 3) Joint inversion of geophysical potential field data. We first present a stochastic inversion method based on a geostatistical approach to recover 3D susceptibility models from magnetic data. The aim of applying geostatistics is to provide quantitative descriptions of natural variables distributed in space or in time and space. We evaluate the uncertainty on the parameter model by using geostatistical unconditional simulations. The realizations are post-conditioned by cokriging to observation data. In order to avoid the natural tendency of the estimated structure to lay near the surface, depth weighting is included in the cokriging system. Then, we introduce algorithm for multiscale inversion, the presented algorithm has the capability of inverting data on multiple supports. The method involves four main steps: i. upscaling of borehole parameters (It could be density or susceptibility) to block parameters, ii. selection of block to use as constraints based on a threshold on kriging variance, iii. inversion of observation data with selected block densities as constraints, and iv. downscaling of inverted parameters to small prisms. Two modes of application are presented: estimation and simulation. Finally, a novel

  19. Nonlinear problems in fluid dynamics and inverse scattering: Nonlinear waves and inverse scattering

    Science.gov (United States)

    Ablowitz, Mark J.

    1994-12-01

    Research investigations involving the fundamental understanding and applications of nonlinear wave motion and related studies of inverse scattering and numerical computation have been carried out and a number of significant results have been obtained. A class of nonlinear wave equations which can be solved by the inverse scattering transform (IST) have been studied, including the Kadaomtsev-Petviashvili (KP) equation, the Davey-Stewartson equation, and the 2+1 Toda system. The solutions obtained by IST correspond to the Cauchy initial value problem with decaying initial data. We have also solved two important systems via the IST method: a 'Volterra' system in 2+1 dimensions and a new one dimensional nonlinear equation which we refer to as the Toda differential-delay equation. Research in computational chaos in moderate to long time numerical simulations continues.

  20. Analysis of the Hessian for Inverse Scattering Problems. Part 1: Inverse Shape Scattering of Acoustic Waves

    Science.gov (United States)

    2011-06-01

    shape of a scatterer from re ected acoustic waves, using a Banach space setting and the Lagrangian approach. The shape Hessian is then analyzed in both H...corresponding to the inverse problem of inferring the shape of a scatterer from reflected acoustic waves, using a Banach space setting and the...compact embeddings in Hölder and Sobolev spaces . These tools allow us to state the shape derivatives in a Banach space setting, and then to analyze the

  1. Analysis of three genetic polymorphisms in Malaysian essential ...

    African Journals Online (AJOL)

    Analysis of three genetic polymorphisms in Malaysian essential hypertensive and type 2 diabetic subjects. ... Genotyping of all the three polymorphisms was performed by PCR-RFLP method with the respective primers and restriction enzymes. The genotypic and allelic frequencies of the respective polymorphisms of the ...

  2. Upper petal lip colour polymorphism in Collinsia heterophylla ...

    Indian Academy of Sciences (India)

    Understanding the genetics of a polymorphic trait is important to predict its likely evolution. In Collinsia heterophylla, the upper petal lip colour can be either be white or white with a purple band, while the lower petal lip colour is invariably purple. Because the corolla is only partly polymorphic, the polymorphism can not have ...

  3. Analysis of TLR polymorphisms in typhoid patients and ...

    African Journals Online (AJOL)

    Ilakkia Sivaji

    2016-01-20

    Jan 20, 2016 ... implicated the genetic variations (polymorphisms) in TLR genes to influence the host susceptibility to infectious diseases. However, the available literature on TLR polymorphism and susceptibility to typhoid fever is unclear. Aim: This study aimed to investigate the polymorphism of TLRs 1, 2, 4 and 5 in ...

  4. Do prion protein gene polymorphisms induce apoptosis in non ...

    Indian Academy of Sciences (India)

    2016-08-26

    Aug 26, 2016 ... Genetic variations such as single nucleotide polymorphisms (SNPs) in prion protein coding gene, Prnp, greatly affect susceptibility to prion diseases in mammals. Here, the coding region of Prnp was screened for polymorphisms in redeared turtle, Trachemys scripta. Four polymorphisms, L203V, N205I, ...

  5. Simultaneous Inversion of Full Data Bandwidth by Tomographic Full Waveform Inversion

    Science.gov (United States)

    Almomin, A. A.; Biondi, B. C.

    2015-12-01

    The convergence of full-waveform inversion can be improved by extending the velocity model along either the subsurface-offset axis or the time-lag axis. The extension of the velocity model along the time-lag axis enables us to linearly model large time shifts caused by velocity perturbations. This linear modeling was based on a new linearization of the scalar wave equation in which perturbation of the extended slowness squared was convolved in time with the second time derivative of the background wavefield. The linearization was accurate for reflected events and transmitted events. We determined that it can effectively model conventional reflection data as well as modern long-offset data containing diving waves. It also enabled the simultaneous inversion of reflections and diving waves, even when the starting velocity model was far from being accurate. We solved the optimization problem related to the inversion with a nested algorithm. The inner iterations were based on the proposed linearization and on a mixing of scales between the short- and long-wavelength components of the velocity model. We significantly improved the convergence rate by preconditioning the extended model to balance the amplitude-versus-angle behavior of the wave-equation and by imposing wavelength continuation of the gradient in the outer loop. Numerical tests performed on synthetic data modeled on the Marmousi model and on Chevron's FWI blind-test data demonstrated the global convergence properties as well as the high-resolution potential of the proposed method.

  6. Two-dimensional inversion of MT (magnetotelluric) data; MT ho no nijigen inversion kaiseki

    Energy Technology Data Exchange (ETDEWEB)

    Ito, S.; Okuno, M.; Ushijima, K.; Mizunaga, H. [Kyushu University, Fukuoka (Japan). Faculty of Engineering

    1997-05-27

    A program has been developed to conduct inversion analysis of two-dimensional model using MT data, accurately. For the developed program, finite element method (FEM) was applied to the section of sequential analysis. A method in which Jacobian matrix is calculated only one first time and is inversely analyzed by fixing this during the repetition, and a method in which Jacobian matrix is corrected at each repetition of inversion analysis, were compared mutually. As a result of the numerical simulation, it was revealed that the Jacobian correction method provided more stable convergence for the simple 2D model, and that the calculation time is almost same as that of the Jacobian fixation method. To confirm the applicability of this program to actually measured data, results obtained from this program were compared with those from the Schlumberger method analysis by using MT data obtained in the Hatchobara geothermal area. Consequently, it was demonstrated that the both are well coincided mutually. 17 refs., 7 figs.

  7. Testing the gravitational inverse-square law

    International Nuclear Information System (INIS)

    Adelberger, Eric; Heckel, B.; Hoyle, C.D.

    2005-01-01

    If the universe contains more than three spatial dimensions, as many physicists believe, our current laws of gravity should break down at small distances. When Isaac Newton realized that the acceleration of the Moon as it orbited around the Earth could be related to the acceleration of an apple as it fell to the ground, it was the first time that two seemingly unrelated physical phenomena had been 'unified'. The quest to unify all the forces of nature is one that still keeps physicists busy today. Newton showed that the gravitational attraction between two point bodies is proportional to the product of their masses and inversely proportional to the square of the distance between them. Newton's theory, which assumes that the gravitational force acts instantaneously, remained essentially unchallenged for roughly two centuries until Einstein proposed the general theory of relativity in 1915. Einstein's radical new theory made gravity consistent with the two basic ideas of relativity: the world is 4D - the three directions of space combined with time - and no physical effect can travel faster than light. The theory of general relativity states that gravity is not a force in the usual sense but a consequence of the curvature of this space-time produced by mass or energy. However, in the limit of low velocities and weak gravitational fields, Einstein's theory still predicts that the gravitational force between two point objects obeys an inverse-square law. One of the outstanding challenges in physics is to finish what Newton started and achieve the ultimate 'grand unification' - to unify gravity with the other three fundamental forces (the electromagnetic force, and the strong and weak nuclear forces) into a single quantum theory. In string theory - one of the leading candidates for an ultimate theory - the fundamental entities of nature are 1D strings and higher-dimensional objects called 'branes', rather than the point-like particles we are familiar with. String

  8. Inverse analysis of turbidites by machine learning

    Science.gov (United States)

    Naruse, H.; Nakao, K.

    2017-12-01

    This study aims to propose a method to estimate paleo-hydraulic conditions of turbidity currents from ancient turbidites by using machine-learning technique. In this method, numerical simulation was repeated under various initial conditions, which produces a data set of characteristic features of turbidites. Then, this data set of turbidites is used for supervised training of a deep-learning neural network (NN). Quantities of characteristic features of turbidites in the training data set are given to input nodes of NN, and output nodes are expected to provide the estimates of initial condition of the turbidity current. The optimization of weight coefficients of NN is then conducted to reduce root-mean-square of the difference between the true conditions and the output values of NN. The empirical relationship with numerical results and the initial conditions is explored in this method, and the discovered relationship is used for inversion of turbidity currents. This machine learning can potentially produce NN that estimates paleo-hydraulic conditions from data of ancient turbidites. We produced a preliminary implementation of this methodology. A forward model based on 1D shallow-water equations with a correction of density-stratification effect was employed. This model calculates a behavior of a surge-like turbidity current transporting mixed-size sediment, and outputs spatial distribution of volume per unit area of each grain-size class on the uniform slope. Grain-size distribution was discretized 3 classes. Numerical simulation was repeated 1000 times, and thus 1000 beds of turbidites were used as the training data for NN that has 21000 input nodes and 5 output nodes with two hidden-layers. After the machine learning finished, independent simulations were conducted 200 times in order to evaluate the performance of NN. As a result of this test, the initial conditions of validation data were successfully reconstructed by NN. The estimated values show very small

  9. Study on relationship between microsatellite polymorphism and ...

    African Journals Online (AJOL)

    Jane

    2010-12-13

    Dec 13, 2010 ... Image Analysis Software. Statistical analysis. Genetic polymorphism analysis. Allele frequencies were computed by gene counting ..... Wang GL, Mao XZ, George HD, Zhao ZS, Zhang LJ, Zeng YQ (2003). DNA tests in Hu sheep and Han sheep (small tail) showed the existence of Booroola (FecB) mutation, ...

  10. RESEARCH ARTICLE Analysis of polymorphisms and selective ...

    Indian Academy of Sciences (India)

    2017-01-27

    Jan 27, 2017 ... collected in Keningau, haplotypes K2, K9, K10, K11, K12, K13 and K14 were exclusively from Kudat while haplotypes K6 and K8 were found only from Kota Kinabalu. Haplotypes K4, K5 and K7 consisted of samples from all the three regions, indicating similar patterns of polymorphism from the different.

  11. Genetic polymorphism of serotonin transporter 5-HTTLPR ...

    Indian Academy of Sciences (India)

    ues to be the second major cause of death in the world. (WHO 2002) and it is associated with economic losses to ..... polymorphism with smoking behavior among adolescents. Am. J. Med. Genet. B. Neuropsychiatr. Genet. 135, 73–78. ... for the treatment of obesity. Curr. Drug Targets 6, 201–213. Heils A., Teufel A., Petri S., ...

  12. Isolation and characterization of polymorphic microsatellite markers ...

    African Journals Online (AJOL)

    Flax (Linum usitatissimum L.) is the third largest natural fiber crop and one of the five major oil crops in the world. ... These novel polymorphic microsatellite loci will be useful in genetic linkage map construction, germplasm classification and identification, gene identification and QTL mapping, and marker-assisted selection ...

  13. Characterization of novel polymorphic microsatellite markers from ...

    Indian Academy of Sciences (India)

    polymorphic microsatellite markers from the cDNA library of Japanese scallop Mizuhopecten yessoensis and cross-species amplification in bay scallop ... Keywords. microsatellite markers; cDNA library; Mizuhopecten yessoensis; Argopecten irradians. .... EST databases as a source for molecular markers: lessons from.

  14. LIG1 polymorphisms: the Indian scenario

    Indian Academy of Sciences (India)

    Elucidation of the genetic diversity and relatedness of the subpopulations of India may provide a unique resource for future analysis of genetic association of several critical community-specific complex diseases.We performed a comprehensive exploration of single nucleotide polymorphisms (SNPs) within the gene DNA ...

  15. Endothelial nitric oxide synthase gene polymorphisms associated ...

    African Journals Online (AJOL)

    Endothelial nitric oxide synthase (NOS3) is involved in key steps of immune response. Genetic factors predispose individuals to periodontal disease. This study's aim was to explore the association between NOS3 gene polymorphisms and clinical parameters in patients with periodontal disease. Genomic DNA was obtained ...

  16. Erythrocyte potassium and glutathione polymorphism determination ...

    African Journals Online (AJOL)

    Jane

    This research is aimed at determining the erythrocyte potassium and glutathione polymorphisms and also to identify the relationship among the various blood parameters in Saanen x Malta crossbred goat raised in Turkey. The allele gene frequencies of KH and KL associated with the potassium concentration.

  17. Erythrocyte potassium and glutathione polymorphism determination ...

    African Journals Online (AJOL)

    This research is aimed at determining the erythrocyte potassium and glutathione polymorphisms and also to identify the relationship among the various blood parameters in Saanen x Malta crossbred goat raised in Turkey. The allele gene frequencies of KH and KL associated with the potassium concentration were ...

  18. Metal Ion Controlled Polymorphism of a Peptide

    DEFF Research Database (Denmark)

    Hemmingsen, Lars Bo Stegeager; Jancso, Attila; Szunyogh, Daniel

    2011-01-01

    , …) in the peptide, and the ligand and structural preferences of the metal ion (in our studies Zn2+, Cd2+, Hg2+, Cu+/2+). Simultaneously, new species such as metal ion bridged ternary complexes or even oligomers may be formed. In recent previous studies we have observed similar polymorphism of zinc finger model...

  19. High-Pressure Polymorphism in Orthoamphiboles

    Science.gov (United States)

    Finkelstein, G. J.; Zhang, D.; Shelton, H.; Dera, P.

    2017-12-01

    Amphiboles are double-chain silicate minerals that are the structurally hydrated counterpart to single-chain, anhydrous pyroxenes. They may play an important role in the earth as a carrier for volatiles in subduction zones, as well as a generator for seismic anisotropy in the upper mantle. Recent work has described previously unrecognized high-pressure polymorphism at low temperatures in a variety of pyroxene minerals, which may be relevant for the structure and dynamics of thick, cold, subducted slabs. However, high-pressure polymorphism in amphiboles above a few GPa in pressure has not been well explored, and if similar polymorphism to pyroxenes exists in this mineral family, it may affect the extent and depth of volatile transport in amphiboles, as well as their rheological properties. At low temperatures and high pressures, orthopyroxenes undergo crystal structure transitions at lower pressures than clinopyroxenes (10-30 GPa vs. > 50 GPa), so for this study we have investigated polymorphism in the anthophyllite-gedrite (Al-free and Al rich) orthoamphibole solid solution series. Using neon gas-loaded diamond anvil cells, we compressed both phases to a maximum pressure of 31 GPa, and observed transitions to new monoclinic structures in both endmembers. In this presentation, we will discuss the details of these transitions and implications for the earth's interior.

  20. Methylenetetrahydrofolate Reductase C677T Polymorphism And ...

    African Journals Online (AJOL)

    for Coronary artery disease (CAD). This study included 65 subjects (40 cases & 25 controls). For all participants in this study total lipids profile, Apo A1, homoysteine, blood glucose, folic acid and genetic polymorphism of MTHFR were done. The percentage distribution of the different genotypes in the study population (all ...

  1. Study of obesity associated proopiomelanocortin gene polymorphism

    African Journals Online (AJOL)

    ... fasting glucose, fasting insulin, homeostasis model assessment for insulin resistance (HOMA-IR) and fasting lipid profiles, and higher frequency of occurrence of non alcoholic fatty liver disease and BED. Allelic frequencies of POMC gene 9 bp insertional polymorphism were comparable in patients and controls (p= 0.956).

  2. Association between the polymorphisms of matrix ...

    African Journals Online (AJOL)

    Nadia I Sewelam

    2013-02-23

    Feb 23, 2013 ... tion fragment length polymorphism (RFLP) for amplified genomic DNA. The frequencies of the com- ... Meanwhile, the race selection should be paid more atten- tion since the pathogenesis of a disease might have different bases in different racial population groups. У 2013 Ain Shams University. Production ...

  3. genes polymorphism on tacrolimus concentrations and dosage

    African Journals Online (AJOL)

    Marwa Helal

    2016-11-30

    Nov 30, 2016 ... transplant donors and recipients on blood level and dose requirements of oral tacrolimus, to help in designing an .... groups [11]. The aim of this pilot study is to assess the influence of ABCB1. (3435 C>T) and CYP3A5 (6986 A>G) genes polymorphisms of both donors and ..... liver graft rejection [24].

  4. Application of randomly amplified polymorphic DNA (RAPD ...

    African Journals Online (AJOL)

    Jane

    2011-10-10

    Oct 10, 2011 ... Polymerase chain reaction (PCR) based molecular markers have become increasingly popular for fingerprinting and cultivars identification since the development of PCR technology. (Saiki et al., 1988). RAPD-PCR (randomly amplified polymorphic DNA) was first conducted by Williams et al. (1990).

  5. Correlation between serum esterase polymorphism and production ...

    African Journals Online (AJOL)

    The polymorphism of serum esterase (Es) of Henan Yuxi fat-tailed sheep was detected through polyacrylamide gel electrophoresis (PAGE), and the correlation between serum esterase and productivity was analyzed. The research result indicated that there are two alleles on the Es loci of Henan Yuxi fat-tailed sheep: Es+ ...

  6. Chromosomal polymorphism in the Sporothrix schenckii complex.

    Science.gov (United States)

    Sasaki, Alexandre A; Fernandes, Geisa F; Rodrigues, Anderson M; Lima, Fábio M; Marini, Marjorie M; Dos S Feitosa, Luciano; de Melo Teixeira, Marcus; Felipe, Maria Sueli Soares; da Silveira, José Franco; de Camargo, Zoilo P

    2014-01-01

    Sporotrichosis is a polymorphic disease caused by a complex of thermodimorphic fungi including S. brasiliensis, S. schenckii sensu stricto (s. str.), S. globosa and S. luriei. Humans and animals can acquire the disease through traumatic inoculation of propagules into the subcutaneous tissue. Despite the importance of sporotrichosis as a disease that can take epidemic proportions there are just a few studies dealing with genetic polymorphisms and genomic architecture of these pathogens. The main objective of this study was to investigate chromosomal polymorphisms and genomic organization among different isolates in the S. schenckii complex. We used pulsed field gel electrophoresis (PFGE) to separate chromosomal fragments of isolated DNA, followed by probe hybridization. Nine loci (β-tubulin, calmodulin, catalase, chitin synthase 1, Internal Transcribed Spacer, Pho85 cyclin-dependent kinase, protein kinase C Ss-2, G protein α subunit and topoisomerase II) were mapped onto chromosomal bands of Brazilian isolates of S. schenckii s. str. and S. brasiliensis. Our results revealed the presence of intra and interspecies polymorphisms in chromosome number and size. The gene hybridization analysis showed that closely related species in phylogenetic analysis had similar genetic organizations, mostly due to identification of synteny groups in chromosomal bands of similar sizes. Our results bring new insights into the genetic diversity and genome organization among pathogenic species in the Sporothrix schenckii complex.

  7. Combined effect between two functional polymorphisms of ...

    Indian Academy of Sciences (India)

    A recent study in four populations (Ireland, UK, Australia and Finland) reported an allelic association between betaine/GABA transporter-1 (-1 or 612) and mesial temporal lobe epilepsy with hippocampal sclerosis. To demonstrate the association between 612 gene polymorphisms and TLE, TaqMan ...

  8. Effect of matrix metalloproteinase promoter polymorphisms on ...

    Indian Academy of Sciences (India)

    large-scale studies regarding gene–gene and gene–environment interactions are needed in the future. [Ye H., He Y., Wang J., Song T., Lan Z., Zhao Y. and Xi M. 2016 Effect of matrix metalloproteinase promoter polymorphisms on endometriosis and adenomyosis risk: evidence from a meta-analysis. J. Genet. 95, 611–619].

  9. Genetic Polymorphisms of Osteopontin in Association with ...

    African Journals Online (AJOL)

    Purpose: To determine the association of osteopontin (OPN) polymorphisms with ankylosing spondylitis (AS). Methods: A total of 120 cases diagnosed with AS and 106 age- and sex-matched healthy controls were recruited. All the patients were human leukocyte antigen (HLA)-B27 positive. Three single nucleotide ...

  10. Genetic diversity among sorghum landraces and polymorphism ...

    African Journals Online (AJOL)

    Microsatellites or simple sequence repeats (SSR) are playing an important role in molecular breeding. This investigation was undertaken to study the genetic diversity among local sorghum accessions from two different agro-ecological zones of Burkina Faso and to assess the polymorphism within local improved varieties ...

  11. Genetic polymorphism of serotonin transporter 5-HTTLPR ...

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Genetics; Volume 90; Issue 1. Genetic polymorphism of serotonin transporter 5-HTTLPR: involvement in smoking behaviour ... The present review examines the role of the serotonin transporter gene (5-HTT) in smoking behaviour and investigating studies that showed association of 5-HTT gene ...

  12. Endothelial nitric oxide synthase gene polymorphisms associated ...

    African Journals Online (AJOL)

    STORAGESEVER

    2010-05-24

    May 24, 2010 ... NOS3 gene polymorphisms and clinical parameters in patients with periodontal disease. Genomic DNA was obtained from the ... (Serrano et al., 2004),. Behcet's disease (Karasneh et al., 2005), diabetes (Monti ... EDTA-treated peripheral venous blood using the salting-out method. (Miller et al., 1988).

  13. Intraspecific chromosomal and genetic polymorphism in Brassica ...

    Indian Academy of Sciences (India)

    2014-04-16

    Apr 16, 2014 ... A. V., Lemesh V. A. and Muravenko O. V. 2014 Intraspecific chromosomal and genetic polymorphism in Brassica napus L. detected by cytogenetic and molecular markers. J. Genet. ...... Howell E. C., Kearsey M. J., Jones G. H., King G. J. and Armstrong. S. J. 2008 A and C genome distinction and ...

  14. Phenotypic characterisation and molecular polymorphism of ...

    African Journals Online (AJOL)

    The study of the phenotypic characterisation and molecular polymorphism of local chicken populations was carried out in Benin on 326 chickens of the Forest ecological area and 316 of the Savannah ecological area, all were 7 months old at least. The collection of blood for the molecular typing was achieved on 121 ...

  15. Eighteen polymorphic microsatellites for domestic pigeon Columba ...

    Indian Academy of Sciences (India)

    Indian Academy of Sciences. ONLINE RESOURCES. Eighteen polymorphic microsatellites for domestic pigeon Columba livia var. domestica developed by cross species amplification of chicken markers. MUKESH1, 2∗ and S. SATHYAKUMAR1. 1Wildlife Institute of India, P. O. Box 18, Chandrabani, Dehradun 248 001, ...

  16. Single-nucleotide polymorphisms in peroxisome proliferator ...

    Indian Academy of Sciences (India)

    However, association of these polymorphisms with the metabolic syndrome and its individual components has not been well investigated in the Indian population. The Indian population harbours the maximum number of diabetics in the world who are thus more susceptible to metabolic disorders. We screened a South ...

  17. MYO9B polymorphisms in multiple sclerosis

    DEFF Research Database (Denmark)

    Kemppinen, A.; Suvela, M.; Tienari, P.J.

    2009-01-01

    Single-nucleotide polymorphisms (SNPs) in the 3' region of myosin IXB (MYO9B) gene have recently been reported to associate with different inflammatory or autoimmune diseases. We monitored for the association of MYO9B variants to multiple sclerosis (MS) in four Northern European populations. First...

  18. LIG1 polymorphisms: the Indian scenario

    Indian Academy of Sciences (India)

    2014-08-14

    Aug 14, 2014 ... LIG1; MAF; SNP; HapMap. Journal of Genetics, Vol. 93, No. 2, August 2014. 459 ..... The CEPH population subgroup consists of 90 samples from 30 trios (two parents and one child) belonging to ..... studies on the association of LIG1 polymorphisms with any complex disorder within Indian subpopulations.

  19. Association between the polymorphisms of angiotensin converting ...

    African Journals Online (AJOL)

    Detailed history taking was done with stress on age, family history, menstrual, obstetric, medical and drug history. Physical examination including body mass index calculation was done. Histopathological examination was done for tumor grading and staging. Detection of ACE gene (I/D) polymorphism by PCR and AT1R ...

  20. Association between the polymorphisms of angiotensin converting ...

    African Journals Online (AJOL)

    Rania Mohamed El Sharkawy

    2014-01-07

    Jan 7, 2014 ... Detailed history taking was done with stress on age, family history, menstrual, obstetric, medical and drug history. Physical examination including body mass index calculation was done. Histopathological examination was done for tumor grading and staging. Detection of ACE gene (I/D) polymorphism by ...

  1. Complementary DNA-amplified fragment length polymorphism ...

    African Journals Online (AJOL)

    owner

    2011-05-09

    May 9, 2011 ... Complementary DNA-amplified fragment length polymorphism (cDNA-AFLP) technology was used to analyze ... that 9 of the studied expressed sequence tags (ESTs) are related to protein modification, 12 ESTs are involved in the .... primers were used during the first strand synthesis of our cDNA synthesis ...

  2. Koka: Programming with Row Polymorphic Effect Types

    Directory of Open Access Journals (Sweden)

    Daan Leijen

    2014-06-01

    Full Text Available We propose a programming model where effects are treated in a disciplined way, and where the potential side-effects of a function are apparent in its type signature. The type and effect of expressions can also be inferred automatically, and we describe a polymorphic type inference system based on Hindley-Milner style inference. A novel feature is that we support polymorphic effects through row-polymorphism using duplicate labels. Moreover, we show that our effects are not just syntactic labels but have a deep semantic connection to the program. For example, if an expression can be typed without an _exn_ effect, then it will never throw an unhandled exception. Similar to Haskell's `runST` we show how we can safely encapsulate stateful operations. Through the state effect, we can also safely combine state with let-polymorphism without needing either imperative type variables or a syntactic value restriction. Finally, our system is implemented fully in a new language called Koka and has been used successfully on various small to medium-sized sample programs ranging from a Markdown processor to a tier-splitted chat application. You can try out Koka live at www.rise4fun.com/koka/tutorial.

  3. Phenotypic characterisation and molecular polymorphism of ...

    African Journals Online (AJOL)

    PRECIOUS

    2010-01-18

    Jan 18, 2010 ... The study of the phenotypic characterisation and molecular polymorphism of local chicken populations was carried out in Benin on 326 chickens of the Forest ecological area and 316 of the Savannah ecological area, all were 7 months old at least. The collection of blood for the molecular typing was.

  4. Random amplified polymorphic DNA based genetic characterization ...

    African Journals Online (AJOL)

    Random amplified polymorphic DNA based genetic characterization of four important species of Bamboo, found in Raigad district, Maharashtra State, India. ... Bambusoideae are differentiated from other members of the family by the presence of petiolate blades with parallel venation and stamens are three, four, six or more, ...

  5. Single-nucleotide polymorphisms in peroxisome proliferator ...

    Indian Academy of Sciences (India)

    Prakash

    the metabolic syndrome (MS) and type 2 diabetes. We also investigated the correlation of these two single-nucleotide polymorphisms (SNPs) with plasma resistin levels. The C1431T SNP was associated with higher levels of plasma resistin (P = 0.017). Furthermore, C1431T was associated with resistin in different tertiles.

  6. Isolation and characterization of polymorphic microsatellites for ...

    Indian Academy of Sciences (India)

    nothing is known about the life-history connections or migra- tions between silver pomfret in the Yellow Sea and China. Sea (Zhao et al. 2011). We all know that ... liminary study on the genetic diversity of four geographic populations of silver pomfret by means of random ampli- fied polymorphic DNA (RAPD) technique.

  7. Polymorphism of a polymer precursor: metastable glycolide polymorph recovered via large scale high-pressure experiments

    DEFF Research Database (Denmark)

    Hutchison, Ian B.; Delori, Amit; Wang, Xiao

    2015-01-01

    Using a large volume high-pressure press a new polymorph of an important precursor for biomedical polymers was isolated in gram quantities and used to seed crystallisation experiments at ambient pressure.......Using a large volume high-pressure press a new polymorph of an important precursor for biomedical polymers was isolated in gram quantities and used to seed crystallisation experiments at ambient pressure....

  8. Analysis of factor VIII gene inversions in 164 unrelated hemophilia A families

    Energy Technology Data Exchange (ETDEWEB)

    Vnencak-Jones, L.; Phillips, J.A. III; Janco, R.L. [Vanderbilt Univ. School of Medicine, Nashville, TN (United States)] [and others

    1994-09-01

    Hemophilia A is an X-linked recessive disease with variable phenotype and both heterogeneous and wide spread mutations in the factor VIII (F8) gene. As a result, diagnostic carrier or prenatal testing often relies upon laborious DNA linkage analysis. Recently, inversion mutations resulting from an intrachromosomal recombination between DNA sequences in one of two A genes {approximately}500 kb upstream from the F8 gene and a homologous A gene in intron 22 of the F8 gene were identified and found in 45% of severe hemophiliacs. We have analyzed banked DNA collected since 1986 from affected males or obligate carrier females representing 164 unrelated hemophilia A families. The disease was sporadic in 37%, familial in 54% and in 10% of families incomplete information was given. A unique deletion was identified in 1/164, a normal pattern was observed in 110/164 (67%), and 53/164 (32%) families had inversion mutations with 43/53 (81%) involving the distal A gene (R3 pattern) and 10/53 (19%) involving the proximal A gene (R2 pattern). While 19% of all rearrangements were R2, in 35 families with severe disease (< 1% VIII:C activity) all 16 rearrangements seen were R3. In 18 families with the R3 pattern and known activities, 16 (89%) had levels < 1%, with the remaining 2 families having {le} 2.4% activity. Further, 18 referrals specifically noted the production of inhibitors and 8/18 (45%) had the R3 pattern. Our findings demonstrate that the R3 inversion mutation patterns is (1) only seen with VIII:C activity levels of {le} 2.4%, (2) seen in 46% of families with severe hemophilia, (3) seen in 45% of hemophiliacs known to have inhibitors, (4) not correlated with sporadic or familial disease and (5) not in disequilibrium with the Bcl I or Taq I intron 18 or ST14 polymorphisms. Finally, in families positive for an inversion mutation, direct testing offers a highly accurate and less expensive alternative to DNA linkage analysis.

  9. Polymorphism Control in Nanostructured Metal Oxides

    Science.gov (United States)

    Sood, Shantanu

    Polymorphic phase transformations are common to all nanocrystalline binary metal oxides. The polymorphic nature of such metal oxides makes available a large number of phases with differing crystal structures, each stable under certain conditions of temperature, pressure, and/or particle size. These different crystal structures translate to unique physical and chemical properties for each structural class of polymorphs. Thus predicting when polymorphic phase transitions are likely to occur becomes important to the synthesis of stable functional materials with desired properties. Theoretical calculations using a heuristic approach have resulted in an accurate estimation of the critical particle size predicting metastable to stable phase transitions. This formula is applied to different case studies: for anatase to rutile titania; gamma-Alumina to alpha-Alumina; and tetragonal to monoclinic zirconia. The theoretical values calculated have been seen to be very close to the experimental results from the literature. Manifestation of the effect of phase transitions in nanostructured metal oxides was provided in the study of metastable to stable phase transitions in WO3. Nanowires of tungsten trioxide have been synthesized in-situ inside an electron microscope. Such structure of tungsten trioxide result due to a metastable to stable phase transformation, from the cubic to the monoclinic phase. The transformation is massive and complete. The structures formed are unique one-dimensional nanowires. Such a method can be scaled inside any equipment equipped with an electron gun, for example lithography systems either using STEM or E-beam lithography. Another study on nanowire formation in binary metal oxides involved the synthesis of stable orthorhombic MoO3 by means of blend electrospinning. Both a traditional single jet electrospinning set up and a novel high-throughput process to get high aspect ratio nanowires. The latter is a jet-controlled and flow controlled

  10. Charge Inversion in semi-permeable membranes

    Science.gov (United States)

    Das, Siddhartha; Sinha, Shayandev; Jing, Haoyuan

    Role of semi-permeable membranes like lipid bilayer is ubiquitous in a myriad of physiological and pathological phenomena. Typically, lipid membranes are impermeable to ions and solutes; however, protein channels embedded in the membrane allow the passage of selective, small ions across the membrane enabling the membrane to adopt a semi-permeable nature. This semi-permeability, in turn, leads to electrostatic potential jump across the membrane, leading to effects such as regulation of intracellular calcium, extracellular-vesicle-membrane interactions, etc. In this study, we theoretically demonstrate that this semi-permeable nature may trigger the most remarkable charge inversion (CI) phenomenon in the cytosol-side of the negatively-charged lipid bilayer membrane that are selectively permeable to only positive ions of a given salt. This CI is manifested as the changing of the sign of the electrostatic potential from negative to positive from the membrane-cytosol interface to deep within the cytosol. We study the impact of the parameters such as the concentration of this salt with selectively permeable ions as well as the concentration of an external salt in the development of this CI phenomenon. We anticipate such CI will profoundly influence the interaction of membrane and intra-cellular moieties (e.g., exosome or multi-cellular vesicles) having implications for a host of biophysical processes.

  11. Image-domain full waveform inversion

    KAUST Repository

    Zhang, Sanzong

    2013-08-20

    The main difficulty with the data-domain full waveform inversion (FWI) is that it tends to get stuck in the local minima associated with the waveform misfit function. This is because the waveform misfit function is highly nonlinear with respect to changes in velocity model. To reduce this nonlinearity, we define the image-domain objective function to minimize the difference of the suboffset-domain common image gathers (CIGs) obtained by migrating the observed data and the calculated data. The derivation shows that the gradient of this new objective function is the combination of the gradient of the conventional FWI and the image-domain differential semblance optimization (DSO). Compared to the conventional FWI, the imagedomain FWI is immune to cycle skipping problems by smearing the nonzero suboffset images along wavepath. It also can avoid the edge effects and the gradient artifacts that are inherent in DSO due to the falsely over-penalized focused images. This is achieved by subtracting the focused image associated with the calculated data from the unfocused image associated with the observed data in the image-domain misfit function. The numerical results of the Marmousi model show that image-domain FWI is less sensitive the initial model than the conventional FWI. © 2013 SEG.

  12. Soft leptogenesis in the inverse seesaw model

    Science.gov (United States)

    Garayoa, Julia; Concepion Gonzalez-Garcia, Maria; Rius, Nuria

    2007-02-01

    We consider leptogenesis induced by soft supersymmetry breaking terms (``soft leptogenesis''), in the context of the inverse seesaw mechanism. In this model there are lepton number (L) conserving and L-violating soft supersymmetry-breaking B-terms involving the singlet sneutrinos which, together with the — generically small — L-violating parameter responsible of the neutrino mass, give a small mass splitting between the four singlet sneutrino states of a single generation. In combination with the trilinear soft supersymmetry breaking terms they also provide new CP violating phases needed to generate a lepton asymmetry in the singlet sneutrino decays. We obtain that in this scenario the lepton asymmetry is proportional to the L-conserving soft supersymmetry-breaking B-term, and it is not suppressed by the L-violating parameters. Consequently we find that, as in the standard see-saw case, this mechanism can lead to sucessful leptogenesis only for relatively small value of the relevant soft bilinear coupling. The right-handed neutrino masses can be sufficiently low to elude the gravitino problem. Also the corresponding Yukawa couplings involving the lightest of the right-handed neutrinos are constrained to be ∑|Y1k|2lesssim10-7 which generically implies that the neutrino mass spectrum has to be strongly hierarchical.

  13. Towards inverse modeling of intratumor heterogeneity

    Science.gov (United States)

    Brutovsky, Branislav; Horvath, Denis

    2015-08-01

    Development of resistance limits efficiency of present anticancer therapies and preventing it remains a big challenge in cancer research. It is accepted, at the intuitive level, that resistance emerges as a consequence of the heterogeneity of cancer cells at the molecular, genetic and cellular levels. Produced by many sources, tumor heterogeneity is extremely complex time dependent statistical characteristics which may be quantified by measures defined in many different ways, most of them coming from statistical mechanics. In this paper, we apply the Markovian framework to relate population heterogeneity to the statistics of the environment. As, from an evolutionary viewpoint, therapy corresponds to a purposeful modi- fication of the cells' fitness landscape, we assume that understanding general relationship between the spatiotemporal statistics of a tumor microenvironment and intratumor heterogeneity will allow to conceive the therapy as an inverse problem and to solve it by optimization techniques. To account for the inherent stochasticity of biological processes at cellular scale, the generalized distancebased concept was applied to express distances between probabilistically described cell states and environmental conditions, respectively.

  14. Phaseless tomographic inverse scattering in Banach spaces

    Science.gov (United States)

    Estatico, C.; Fedeli, A.; Pastorino, M.; Randazzo, A.; Tavanti, E.

    2016-10-01

    In conventional microwave imaging, a hidden dielectric object under test is illuminated by microwave incident waves and the field it scatters is measured in magnitude and phase in order to retrieve the dielectric properties by solving the related non-homogenous Helmholtz equation or its Lippmann-Schwinger integral formulation. Since the measurement of the phase of electromagnetic waves can be still considered expensive in real applications, in this paper only the magnitude of the scattering wave fields is measured in order to allow a reduction of the cost of the measurement apparatus. In this respect, we firstly analyse the properties of the phaseless scattering nonlinear forward modelling operator in its integral form and we provide an analytical expression for computing its Fréchet derivative. Then, we propose an inexact Newton method to solve the associated nonlinear inverse problems, where any linearized step is solved by a Lp Banach space iterative regularization method which acts on the dual space Lp* . Indeed, it is well known that regularization in special Banach spaces, such us Lp with 1 < p < 2, allows to promote sparsity and to reduce Gibbs phenomena and over-smoothness. Preliminary results concerning numerically computed field data are shown.

  15. Direct and Inverse Problems in Statistical Wavefields

    International Nuclear Information System (INIS)

    Wolf, Emil

    2002-01-01

    In this report account is presented of research carried out during the period September 1, 1999-August 31, 2002 under the sponsorship of the Department of Energy, grant DE-FG02-90ER14119. The research covered several areas of modern optical physics, particularly propagation of partially coherent light and its interaction with deterministic and with random media, spectroscopy with partially coherent light, polarization properties of statistical wave fields, effects of moving diffusers on coherence and on the spectra of light transmitted and scattered by them, reciprocity inequalities involving spatial and angular correlations of partially coherent beams, spreading of partially coherent beams in-random media, inverse source problems, computed and diffraction tomography and partially coherent solitons. We have discovered a new phenomenon in an emerging field of physical optics, known as singular optics; specifically we found that the spectrum of light changes drastically in the neighborhood of points where the intensity has zero value and where, consequently, the phase becomes singular, We noted some potential applications of this phenomenon. The results of our investigations were reported in 39 publications. They are listed on pages 3 to 5. Summaries of these publications are given on pages 6-13. Scientists who have participated in this research are listed on page 14

  16. Inverse Magnus effect on a rotating sphere

    Science.gov (United States)

    Kim, Jooha; Park, Hyungmin; Choi, Haecheon; Yoo, Jung Yul

    2011-11-01

    In this study, we investigate the flow characteristics of rotating spheres in the subcritical Reynolds number (Re) regime by measuring the drag and lift forces on the sphere and the two-dimensional velocity in the wake. The experiment is conducted in a wind tunnel at Re = 0 . 6 ×105 - 2 . 6 ×105 and the spin ratio (ratio of surface velocity to the free-stream velocity) of 0 (no spin) - 0.5. The drag coefficient on a stationary sphere remains nearly constant at around 0.52. However, the magnitude of lift coefficient is nearly zero at Re Magnus effect, depending on the magnitudes of the Reynolds number and spin ratio. The velocity field measured from a particle image velocimetry (PIV) indicates that non-zero lift coefficient on a stationary sphere at Re > 2 . 0 ×105 results from the asymmetry of separation line, whereas the inverse Magnus effect for the rotating sphere results from the differences in the boundary-layer growth and separation along the upper and lower sphere surfaces. Supported by the WCU, Converging Research Center and Priority Research Centers Program, NRF, MEST, Korea.

  17. Source Estimation by Full Wave Form Inversion

    Energy Technology Data Exchange (ETDEWEB)

    Sjögreen, Björn [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Center for Applied Scientific Computing; Petersson, N. Anders [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Center for Applied Scientific Computing

    2013-08-07

    Given time-dependent ground motion recordings at a number of receiver stations, we solve the inverse problem for estimating the parameters of the seismic source. The source is modeled as a point moment tensor source, characterized by its location, moment tensor components, the start time, and frequency parameter (rise time) of its source time function. In total, there are 11 unknown parameters. We use a non-linear conjugate gradient algorithm to minimize the full waveform misfit between observed and computed ground motions at the receiver stations. An important underlying assumption of the minimization problem is that the wave propagation is accurately described by the elastic wave equation in a heterogeneous isotropic material. We use a fourth order accurate finite difference method, developed in [12], to evolve the waves forwards in time. The adjoint wave equation corresponding to the discretized elastic wave equation is used to compute the gradient of the misfit, which is needed by the non-linear conjugated minimization algorithm. A new source point moment source discretization is derived that guarantees that the Hessian of the misfit is a continuous function of the source location. An efficient approach for calculating the Hessian is also presented. We show how the Hessian can be used to scale the problem to improve the convergence of the non-linear conjugated gradient algorithm. Numerical experiments are presented for estimating the source parameters from synthetic data in a layer over half-space problem (LOH.1), illustrating rapid convergence of the proposed approach.

  18. Inverse Stochastic Resonance in Cerebellar Purkinje Cells.

    Directory of Open Access Journals (Sweden)

    Anatoly Buchin

    2016-08-01

    Full Text Available Purkinje neurons play an important role in cerebellar computation since their axons are the only projection from the cerebellar cortex to deeper cerebellar structures. They have complex internal dynamics, which allow them to fire spontaneously, display bistability, and also to be involved in network phenomena such as high frequency oscillations and travelling waves. Purkinje cells exhibit type II excitability, which can be revealed by a discontinuity in their f-I curves. We show that this excitability mechanism allows Purkinje cells to be efficiently inhibited by noise of a particular variance, a phenomenon known as inverse stochastic resonance (ISR. While ISR has been described in theoretical models of single neurons, here we provide the first experimental evidence for this effect. We find that an adaptive exponential integrate-and-fire model fitted to the basic Purkinje cell characteristics using a modified dynamic IV method displays ISR and bistability between the resting state and a repetitive activity limit cycle. ISR allows the Purkinje cell to operate in different functional regimes: the all-or-none toggle or the linear filter mode, depending on the variance of the synaptic input. We propose that synaptic noise allows Purkinje cells to quickly switch between these functional regimes. Using mutual information analysis, we demonstrate that ISR can lead to a locally optimal information transfer between the input and output spike train of the Purkinje cell. These results provide the first experimental evidence for ISR and suggest a functional role for ISR in cerebellar information processing.

  19. On some Toeplitz matrices and their inversions

    Directory of Open Access Journals (Sweden)

    S. Dutta

    2014-10-01

    Full Text Available In this article, using the difference operator B(a[m], we introduce a lower triangular Toeplitz matrix T which includes several difference matrices such as Δ(1,Δ(m,B(r,s,B(r,s,t, and B(r̃,s̃,t̃,ũ in different special cases. For any x ∈ w and m∈N0={0,1,2,…}, the difference operator B(a[m] is defined by (B(a[m]xk=ak(0xk+ak-1(1xk-1+ak-2(2xk-2+⋯+ak-m(mxk-m,(k∈N0 where a[m] = {a(0, a(1, …, a(m} and a(i = (ak(i for 0 ⩽ i ⩽ m are convergent sequences of real numbers. We use the convention that any term with negative subscript is equal to zero. The main results of this article relate to the determination and applications of the inverse of the Toeplitz matrix T.

  20. Full Waveform Inversion Using Nonlinearly Smoothed Wavefields

    KAUST Repository

    Li, Y.

    2017-05-26

    The lack of low frequency information in the acquired data makes full waveform inversion (FWI) conditionally converge to the accurate solution. An initial velocity model that results in data with events within a half cycle of their location in the observed data was required to converge. The multiplication of wavefields with slightly different frequencies generates artificial low frequency components. This can be effectively utilized by multiplying the wavefield with itself, which is nonlinear operation, followed by a smoothing operator to extract the artificially produced low frequency information. We construct the objective function using the nonlinearly smoothed wavefields with a global-correlation norm to properly handle the energy imbalance in the nonlinearly smoothed wavefield. Similar to the multi-scale strategy, we progressively reduce the smoothing width applied to the multiplied wavefield to welcome higher resolution. We calculate the gradient of the objective function using the adjoint-state technique, which is similar to the conventional FWI except for the adjoint source. Examples on the Marmousi 2 model demonstrate the feasibility of the proposed FWI method to mitigate the cycle-skipping problem in the case of a lack of low frequency information.