WorldWideScience

Sample records for topological partition function

  1. Topological string partition functions as polynomials

    International Nuclear Information System (INIS)

    Yamaguchi, Satoshi; Yau Shingtung

    2004-01-01

    We investigate the structure of the higher genus topological string amplitudes on the quintic hypersurface. It is shown that the partition functions of the higher genus than one can be expressed as polynomials of five generators. We also compute the explicit polynomial forms of the partition functions for genus 2, 3, and 4. Moreover, some coefficients are written down for all genus. (author)

  2. Deformed Topological Partition Function and Nekrasov Backgrounds

    CERN Document Server

    Antoniadis, I; Narain, K S; Taylor, T R

    2010-01-01

    A deformation of the N=2 topological string partition function is analyzed by considering higher dimensional F-terms of the type W^{2g}*Upsilon^n, where W is the chiral Weyl superfield and each Upsilon factor stands for the chiral projection of a real function of N=2 vector multiplets. These terms generate physical amplitudes involving two anti-self-dual Riemann tensors, 2g-2 anti-self-dual graviphoton field strengths and 2n self-dual field strengths from the matter vector multiplets. Their coefficients F_{g,n} generalizing the genus g partition function F_{g,0} of the topological twisted type II theory, can be used to define a generating functional by introducing deformation parameters besides the string coupling. Choosing all matter field strengths to be that of the dual heterotic dilaton supermultiplet, one obtains two parameters that we argue should correspond to the deformation parameters of the Nekrasov partition function in the field theory limit, around the conifold singularity. Its perturbative part ...

  3. The wave function behavior of the open topological string partition function on the conifold

    International Nuclear Information System (INIS)

    Kashani-Poor, Amir-Kian

    2007-01-01

    We calculate the topological string partition function to all genus on the conifold, in the presence of branes. We demonstrate that the partition functions for different brane backgrounds (smoothly connected along a quantum corrected moduli space) can be interpreted as the same wave function in different polarizations. This behavior has a natural interpretation in the Chern-Simons target space description of the topological theory. Our detailed analysis however indicates that non-perturbatively, a modification of real Chern-Simons theory is required to capture the correct target space theory of the topological string. We perform our calculations in the framework of a free fermion representation of the open topological string, demonstrating that this framework extends beyond the simple C 3 geometry. The notion of a fermionic brane creation operator arises in this setting, and we study to what extent the wave function properties of the partition function can be extended to this operator

  4. Compactified webs and domain wall partition functions

    Energy Technology Data Exchange (ETDEWEB)

    Shabbir, Khurram [Government College University, Department of Mathematics, Lahore (Pakistan)

    2017-04-15

    In this paper we use the topological vertex formalism to calculate a generalization of the ''domain wall'' partition function of M-strings. This generalization allows calculation of partition function of certain compactified webs using a simple gluing algorithm similar to M-strings case. (orig.)

  5. Gluing Nekrasov Partition Functions

    Science.gov (United States)

    Qiu, Jian; Tizzano, Luigi; Winding, Jacob; Zabzine, Maxim

    2015-07-01

    In this paper we summarise the localisation calculation of 5D super Yang-Mills on simply connected toric Sasaki-Einstein (SE) manifolds. We show how various aspects of the computation, including the equivariant index, the asymptotic behaviour and the factorisation property are governed by the combinatorial data of the toric geometry. We prove that the perturbative partition function on a simply connected SE manifold corresponding to an n-gon toric diagram factorises to n copies of perturbative part (zero instanton sector) of the Nekrasov partition function. This leads us to conjecture a prescription for the computation of the complete partition function, by gluing n copies of the full Nekrasov partition functions. This work is a generalisation of some earlier computation carried out on Y p, q manifolds, whose moment map cone has a quadrangle base and our result is valid for manifolds whose moment map cones have pentagon base, hexagon base, etc. The algorithm we used for dealing with general cones may also be of independent interest.

  6. Matrix string partition function

    CERN Document Server

    Kostov, Ivan K; Kostov, Ivan K.; Vanhove, Pierre

    1998-01-01

    We evaluate quasiclassically the Ramond partition function of Euclidean D=10 U(N) super Yang-Mills theory reduced to a two-dimensional torus. The result can be interpreted in terms of free strings wrapping the space-time torus, as expected from the point of view of Matrix string theory. We demonstrate that, when extrapolated to the ultraviolet limit (small area of the torus), the quasiclassical expressions reproduce exactly the recently obtained expression for the partition of the completely reduced SYM theory, including the overall numerical factor. This is an evidence that our quasiclassical calculation might be exact.

  7. Generalised twisted partition functions

    CERN Document Server

    Petkova, V B

    2001-01-01

    We consider the set of partition functions that result from the insertion of twist operators compatible with conformal invariance in a given 2D Conformal Field Theory (CFT). A consistency equation, which gives a classification of twists, is written and solved in particular cases. This generalises old results on twisted torus boundary conditions, gives a physical interpretation of Ocneanu's algebraic construction, and might offer a new route to the study of properties of CFT.

  8. Partition functions for supersymmetric black holes

    CERN Document Server

    Manschot, Jan

    2008-01-01

    This dissertation presents recent discoveries on partition functions for four-dimensional supersymmetric black holes. These partition functions are important tools to explain the entropy of black holes from a microscopic point of view within string theory and M-theory. The results are applied to two central research topics in modern theoretical physics, namely (1) the correspondence between the physics (including gravity) within an Anti-de Sitter space and conformal field theory, and (2) the relation between black holes and topological strings.

  9. The stringy instanton partition function

    Energy Technology Data Exchange (ETDEWEB)

    Bonelli, Giulio [International School of Advanced Studies (SISSA),via Bonomea 265, 34136 Trieste (Italy); INFN, Sezione di Trieste,Trieste (Italy); I.C.T.P.,Strada Costiera 11, 34014 Trieste (Italy); Sciarappa, Antonio; Tanzini, Alessandro; Vasko, Petr [International School of Advanced Studies (SISSA),via Bonomea 265, 34136 Trieste (Italy); INFN, Sezione di Trieste,Trieste (Italy)

    2014-01-09

    We perform an exact computation of the gauged linear sigma model associated to a D1-D5 brane system on a resolved A{sub 1} singularity. This is accomplished via supersymmetric localization on the blown-up two-sphere. We show that in the blow-down limit ℂ{sup 2}/ℤ{sub 2} the partition function reduces to the Nekrasov partition function evaluating the equivariant volume of the instanton moduli space. For finite radius we obtain a tower of world-sheet instanton corrections, that we identify with the equivariant Gromov-Witten invariants of the ADHM moduli space. We show that these corrections can be encoded in a deformation of the Seiberg-Witten prepotential. From the mathematical viewpoint, the D1-D5 system under study displays a twofold nature: the D1-branes viewpoint captures the equivariant quantum cohomology of the ADHM instanton moduli space in the Givental formalism, and the D5-branes viewpoint is related to higher rank equivariant Donaldson-Thomas invariants of ℙ{sup 1}×ℂ{sup 2}.

  10. Generating functional for Donaldson invariants and operator algebra in topological D=4 Yang-Mills theory

    International Nuclear Information System (INIS)

    Johansen, A.A.

    1992-01-01

    It is shown, that under the certain constraints the generating functional for the Donaldson invariants in the D=4 topological Yang-Mills theory can be interpreted as a partition function for the renormalizable theory. 20 refs

  11. Partition functions for supersymmetric black holes

    NARCIS (Netherlands)

    Manschot, J.

    2008-01-01

    This thesis presents a number of results on partition functions for four-dimensional supersymmetric black holes. These partition functions are important tools to explain the entropy of black holes from a microscopic point of view. Such a microscopic explanation was desired after the association of a

  12. Topologies on the algebra of test functions

    International Nuclear Information System (INIS)

    Hofmann, G.

    1977-01-01

    The algebraical structure of deltasub(THETA) (tensor algebra over the Schwartz space) defines two topologies, tausub(P)tausub(THETA). Some properties are studied of the locally convex topologies situated between tausub(P) and tausub(THETA). A lot of topologies is constructed in which the cone of positive elements is a normal one and regards the continuity of the Wightman functionals of free fields and of the Wick squares in free fields and their derivatives in such topologies

  13. Service task partition and distribution in star topology computer grid subject to data security constraints

    International Nuclear Information System (INIS)

    Xiang Yanping; Levitin, Gregory

    2011-01-01

    The paper considers grid computing systems in which the resource management systems (RMS) can divide service tasks into execution blocks (EBs) and send these blocks to different resources. In order to provide a desired level of service reliability the RMS can assign the same blocks to several independent resources for parallel execution. The data security is a crucial issue in distributed computing that affects the execution policy. By the optimal service task partition into the EBs and their distribution among resources, one can achieve the greatest possible service reliability and/or expected performance subject to data security constraints. The paper suggests an algorithm for solving this optimization problem. The algorithm is based on the universal generating function technique and on the evolutionary optimization approach. Illustrative examples are presented. - Highlights: → Grid service with star topology is considered. → An algorithm for evaluating service reliability and data security is presented. → A tradeoff between the service reliability and data security is analyzed. → A procedure for optimal service task partition and distribution is suggested.

  14. Domain wall partition functions and KP

    International Nuclear Information System (INIS)

    Foda, O; Wheeler, M; Zuparic, M

    2009-01-01

    We observe that the partition function of the six-vertex model on a finite square lattice with domain wall boundary conditions is (a restriction of) a KP τ function and express it as an expectation value of charged free fermions (up to an overall normalization)

  15. Shift versus Extension in Refined Partition Functions

    CERN Document Server

    Krefl, Daniel

    2010-01-01

    We have recently shown that the global behavior of the partition function of N=2 gauge theory in the general Omega-background is captured by special geometry in the guise of the (extended) holomorphic anomaly equation. We here analyze the fate of our results under the shift of the mass parameters of the gauge theory. The preferred value of the shift, noted previously in other contexts, restores the Z_2 symmetry of the instanton partition function under inversion of the Omega-background, and removes the extension. We comment on various connections.

  16. Thirring model partition functions and harmonic differentials

    Science.gov (United States)

    Freedman, D. Z.; Pilch, K.

    1988-10-01

    The partition function of the Thirring model on a Riemann surface is calculated using the representation of the model as a fermion interacting with an auxiliary vector potential. The Hodge decomposition of the potential is used and the integral over the harmonic forms is shown to reproduce exactly the soliton sum in the bosonic version of the theory.

  17. First Meeting in Topology and Functional Analysis

    CERN Document Server

    López-Pellicer, Manuel

    2014-01-01

    Descriptive topology and functional analysis, with extensive material demonstrating new connections between them, are the subject of the first section of this work. Applications to spaces of continuous functions, topological Abelian groups, linear topological equivalence and to the separable quotient problem are included and are presented as open problems. The second section is devoted to Banach spaces, Banach algebras and operator theory. Each chapter presents a lot of worthwhile and important recent theorems with an abstract discussing the material in the chapter. Each chapter can almost be seen as a survey covering a particular area.

  18. Quantum gravity partition functions in three dimensions

    Science.gov (United States)

    Maloney, Alexander; Witten, Edward

    2010-02-01

    We consider pure three-dimensional quantum gravity with a negative cosmological constant. The sum of known contributions to the partition function from classical geometries can be computed exactly, including quantum corrections. However, the result is not physically sensible, and if the model does exist, there are some additional contributions. One possibility is that the theory may have long strings and a continuous spectrum. Another possibility is that complex geometries need to be included, possibly leading to a holomorphically factorized partition function. We analyze the subleading corrections to the Bekenstein-Hawking entropy and show that these can be correctly reproduced in such a holomorphically factorized theory. We also consider the Hawking-Page phase transition between a thermal gas and a black hole and show that it is a phase transition of Lee-Yang type, associated with a condensation of zeros in the complex temperature plane. Finally, we analyze pure three-dimensional supergravity, with similar results.

  19. Tunable current partition at zero-line intersection of quantum anomalous Hall topologies

    Science.gov (United States)

    Ren, Yafei; Zeng, Junjie; Wang, Ke; Xu, Fuming; Qiao, Zhenhua

    2017-10-01

    At the interface between two-dimensional materials with different topologies, topologically protected one-dimensional states (also named zero-line modes) arise. Here, we focus on the quantum anomalous Hall-effect-based zero-line modes formed at the interface between regimes with different Chern numbers. We find that these zero-line modes are chiral and unilaterally conductive due to the breaking of time-reversal invariance. For a beam splitter consisting of two intersecting zero lines, the chirality ensures that a current can only be injected from two of the four terminals. Our numerical results further show that, in the absence of contact resistance, the (anti-)clockwise partitions of the currents from these two terminals are the same owing to the current conservation, which effectively simplifies the partition laws. We find that the partition is robust against the relative shift of Fermi energy but can be adjusted effectively by tuning the relative magnetization strengths at different regimes or relative angles between zero lines.

  20. Partition functions of web diagrams with an O7{sup −}-plane

    Energy Technology Data Exchange (ETDEWEB)

    Hayashi, Hirotaka [Tokai University, 4-1-1 Kitakaname,Hiratsuka, Kanagawa 259-1292 (Japan); Departamento de Física Teórica and Instituto de Física Teórica UAM/CSIC,Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid (Spain); Zoccarato, Gianluca [Departamento de Física Teórica and Instituto de Física Teórica UAM/CSIC,Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid (Spain)

    2017-03-22

    We consider the computation of the topological string partition function for 5-brane web diagrams with an O7{sup −}-plane. Since upon quantum resolution of the orientifold plane these diagrams become non-toric web diagrams without the orientifold we are able to apply the topological vertex to obtain the Nekrasov partition function of the corresponding 5d theory. We apply this procedure to the case of 5d SU(N) theories with one hypermultiplet in the antisymmetric representation and to the case of 5d pure USp(2N) theories. For these cases we discuss the dictionary between parameters and moduli of the 5d gauge theory and lengths of 5-branes in the web diagram and moreover we perform comparison of the results obtained via application of the topological vertex and the one obtained via localisation techniques, finding in all instances we consider perfect agreement.

  1. A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions

    Science.gov (United States)

    Burke, Sean V.; Wysocki, William P.; Clark, Lynn G.

    2018-01-01

    The systematics of grasses has advanced through applications of plastome phylogenomics, although studies have been largely limited to subfamilies or other subgroups of Poaceae. Here we present a plastome phylogenomic analysis of 250 complete plastomes (179 genera) sampled from 44 of the 52 tribes of Poaceae. Plastome sequences were determined from high throughput sequencing libraries and the assemblies represent over 28.7 Mbases of sequence data. Phylogenetic signal was characterized in 14 partitions, including (1) complete plastomes; (2) protein coding regions; (3) noncoding regions; and (4) three loci commonly used in single and multi-gene studies of grasses. Each of the four main partitions was further refined, alternatively including or excluding positively selected codons and also the gaps introduced by the alignment. All 76 protein coding plastome loci were found to be predominantly under purifying selection, but specific codons were found to be under positive selection in 65 loci. The loci that have been widely used in multi-gene phylogenetic studies had among the highest proportions of positively selected codons, suggesting caution in the interpretation of these earlier results. Plastome phylogenomic analyses confirmed the backbone topology for Poaceae with maximum bootstrap support (BP). Among the 14 analyses, 82 clades out of 309 resolved were maximally supported in all trees. Analyses of newly sequenced plastomes were in agreement with current classifications. Five of seven partitions in which alignment gaps were removed retrieved Panicoideae as sister to the remaining PACMAD subfamilies. Alternative topologies were recovered in trees from partitions that included alignment gaps. This suggests that ambiguities in aligning these uncertain regions might introduce a false signal. Resolution of these and other critical branch points in the phylogeny of Poaceae will help to better understand the selective forces that drove the radiation of the BOP and PACMAD

  2. Octanol/water partition coefficient (logP), topological indices (χ,J ...

    Indian Academy of Sciences (India)

    WINTEC

    Octanol/water partition coefficient (logP), topological indices (χ,J) and E-state indices (ENH2, ES, ESO, ESO2, ECH3, ... S 3.24 9.668 1.983 5.789 1.477 0.000 0.000 11.264 0.000 0.000 0.000. 3. 3-OCH3. S 3.24 9.651 1.923 5.781 1.500 0.000 0.000 11.246 0.000 0.000 0.000. 4. 4-OCH3. S 3.24 9.651 1.872 5.775 1.514 ...

  3. Implicit Functions from Topological Vector Spaces to Banach Spaces

    OpenAIRE

    Glockner, Helge

    2003-01-01

    We prove implicit function theorems for mappings on topological vector spaces over valued fields. In the real and complex cases, we obtain implicit function theorems for mappings from arbitrary (not necessarily locally convex) topological vector spaces to Banach spaces.

  4. Topological characteristics of non-smooth functionals

    International Nuclear Information System (INIS)

    Klimov, V S

    1998-01-01

    We establish infinite-dimensional variants of the Poincare-Hopf theorem for many-valued vector fields generated by operators of monotonic type. We suggest conditions for the stabilization of the homology groups of closed subsets of a Banach space when approximated by finite-dimensional sections. Emphasis is given to the study of topological characteristics of Lebesgue sets of Lipschitz functionals defined on a closed convex subset of a reflexive space

  5. A partition function approximation using elementary symmetric functions.

    Directory of Open Access Journals (Sweden)

    Ramu Anandakrishnan

    Full Text Available In statistical mechanics, the canonical partition function [Formula: see text] can be used to compute equilibrium properties of a physical system. Calculating [Formula: see text] however, is in general computationally intractable, since the computation scales exponentially with the number of particles [Formula: see text] in the system. A commonly used method for approximating equilibrium properties, is the Monte Carlo (MC method. For some problems the MC method converges slowly, requiring a very large number of MC steps. For such problems the computational cost of the Monte Carlo method can be prohibitive. Presented here is a deterministic algorithm - the direct interaction algorithm (DIA - for approximating the canonical partition function [Formula: see text] in [Formula: see text] operations. The DIA approximates the partition function as a combinatorial sum of products known as elementary symmetric functions (ESFs, which can be computed in [Formula: see text] operations. The DIA was used to compute equilibrium properties for the isotropic 2D Ising model, and the accuracy of the DIA was compared to that of the basic Metropolis Monte Carlo method. Our results show that the DIA may be a practical alternative for some problems where the Monte Carlo method converge slowly, and computational speed is a critical constraint, such as for very large systems or web-based applications.

  6. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

    Science.gov (United States)

    Ulianov, Sergey V.; Khrameeva, Ekaterina E.; Gavrilov, Alexey A.; Flyamer, Ilya M.; Kos, Pavel; Mikhaleva, Elena A.; Penin, Aleksey A.; Logacheva, Maria D.; Imakaev, Maxim V.; Chertovich, Alexander; Gelfand, Mikhail S.; Shevelyov, Yuri Y.; Razin, Sergey V.

    2016-01-01

    Recent advances enabled by the Hi-C technique have unraveled many principles of chromosomal folding that were subsequently linked to disease and gene regulation. In particular, Hi-C revealed that chromosomes of animals are organized into topologically associating domains (TADs), evolutionary conserved compact chromatin domains that influence gene expression. Mechanisms that underlie partitioning of the genome into TADs remain poorly understood. To explore principles of TAD folding in Drosophila melanogaster, we performed Hi-C and poly(A)+ RNA-seq in four cell lines of various origins (S2, Kc167, DmBG3-c2, and OSC). Contrary to previous studies, we find that regions between TADs (i.e., the inter-TADs and TAD boundaries) in Drosophila are only weakly enriched with the insulator protein dCTCF, while another insulator protein Su(Hw) is preferentially present within TADs. However, Drosophila inter-TADs harbor active chromatin and constitutively transcribed (housekeeping) genes. Accordingly, we find that binding of insulator proteins dCTCF and Su(Hw) predicts TAD boundaries much worse than active chromatin marks do. Interestingly, inter-TADs correspond to decompacted inter-bands of polytene chromosomes, whereas TADs mostly correspond to densely packed bands. Collectively, our results suggest that TADs are condensed chromatin domains depleted in active chromatin marks, separated by regions of active chromatin. We propose the mechanism of TAD self-assembly based on the ability of nucleosomes from inactive chromatin to aggregate, and lack of this ability in acetylated nucleosomal arrays. Finally, we test this hypothesis by polymer simulations and find that TAD partitioning may be explained by different modes of inter-nucleosomal interactions for active and inactive chromatin. PMID:26518482

  7. Topological entropy of continuous functions on topological spaces

    International Nuclear Information System (INIS)

    Liu Lei; Wang Yangeng; Wei Guo

    2009-01-01

    Adler, Konheim and McAndrew introduced the concept of topological entropy of a continuous mapping for compact dynamical systems. Bowen generalized the concept to non-compact metric spaces, but Walters indicated that Bowen's entropy is metric-dependent. We propose a new definition of topological entropy for continuous mappings on arbitrary topological spaces (compactness, metrizability, even axioms of separation not necessarily required), investigate fundamental properties of the new entropy, and compare the new entropy with the existing ones. The defined entropy generates that of Adler, Konheim and McAndrew and is metric-independent for metrizable spaces. Yet, it holds various basic properties of Adler, Konheim and McAndrew's entropy, e.g., the entropy of a subsystem is bounded by that of the original system, topologically conjugated systems have a same entropy, the entropy of the induced hyperspace system is larger than or equal to that of the original system, and in particular this new entropy coincides with Adler, Konheim and McAndrew's entropy for compact systems

  8. Rapid calculation of partition functions and free energies of fluids.

    Science.gov (United States)

    Do, Hainam; Hirst, Jonathan D; Wheatley, Richard J

    2011-11-07

    The partition function (Q) is a central quantity in statistical mechanics. All the thermodynamic properties can be derived from it. Here we show how the partition function of fluids can be calculated directly from simulations; this allows us to obtain the Helmholtz free energy (F) via F = -k(B)T ln Q. In our approach, we divide the density of states, assigning half of the configurations found in a simulation to a high-energy partition and half to a low-energy partition. By recursively dividing the low-energy partition into halves, we map out the complete density of states for a continuous system. The result allows free energy to be calculated directly as a function of temperature. We illustrate our method in the context of the free energy of water.

  9. Exact partition functions for gauge theories on Rλ3

    Directory of Open Access Journals (Sweden)

    Jean-Christophe Wallet

    2016-11-01

    Full Text Available The noncommutative space Rλ3, a deformation of R3, supports a 3-parameter family of gauge theory models with gauge-invariant harmonic term, stable vacuum and which are perturbatively finite to all orders. Properties of this family are discussed. The partition function factorizes as an infinite product of reduced partition functions, each one corresponding to the reduced gauge theory on one of the fuzzy spheres entering the decomposition of Rλ3. For a particular sub-family of gauge theories, each reduced partition function is exactly expressible as a ratio of determinants. A relation with integrable 2-D Toda lattice hierarchy is indicated.

  10. Partition function of the two-dimensional nearest neighbour Ising ...

    Indian Academy of Sciences (India)

    Abstract. The partition function for two-dimensional nearest neighbour Ising model in a non-zero magnetic field have been derived for a finite square lattice of 16, 25, 36 and 64 sites with the help of ...

  11. Modular invariant partition functions for toroidally compactified bosonic string

    International Nuclear Information System (INIS)

    Ardalan, F.; Arfaei, H.

    1988-06-01

    We systematically find all the modular invariant partition functions for the toroidally compactified closed bosonic string defined on a subset of a simply laced simple Lie algebra lattice, or equivalently for the closed bosonic string moving on a group manifold with the WZW coefficient k=1. We examine the relation between modular invariance of partition function and the possibility of describing it by an even Lorentzian self dual lattice in our context. (author). 23 refs

  12. Topology-function conservation in protein-protein interaction networks.

    Science.gov (United States)

    Davis, Darren; Yaveroğlu, Ömer Nebil; Malod-Dognin, Noël; Stojmirovic, Aleksandar; Pržulj, Nataša

    2015-05-15

    Proteins underlay the functioning of a cell and the wiring of proteins in protein-protein interaction network (PIN) relates to their biological functions. Proteins with similar wiring in the PIN (topology around them) have been shown to have similar functions. This property has been successfully exploited for predicting protein functions. Topological similarity is also used to guide network alignment algorithms that find similarly wired proteins between PINs of different species; these similarities are used to transfer annotation across PINs, e.g. from model organisms to human. To refine these functional predictions and annotation transfers, we need to gain insight into the variability of the topology-function relationships. For example, a function may be significantly associated with specific topologies, while another function may be weakly associated with several different topologies. Also, the topology-function relationships may differ between different species. To improve our understanding of topology-function relationships and of their conservation among species, we develop a statistical framework that is built upon canonical correlation analysis. Using the graphlet degrees to represent the wiring around proteins in PINs and gene ontology (GO) annotations to describe their functions, our framework: (i) characterizes statistically significant topology-function relationships in a given species, and (ii) uncovers the functions that have conserved topology in PINs of different species, which we term topologically orthologous functions. We apply our framework to PINs of yeast and human, identifying seven biological process and two cellular component GO terms to be topologically orthologous for the two organisms. © The Author 2015. Published by Oxford University Press.

  13. A brief history of partitions of numbers, partition functions and their modern applications

    Science.gov (United States)

    Debnath, Lokenath

    2016-04-01

    'Number rules the universe.' The Pythagoras 'If you wish to forsee the future of mathematics our course is to study the history and present conditions of the science.' Henri Poincaré 'The primary source (Urqell) of all mathematics are integers.' Hermann Minkowski This paper is written to commemorate the centennial anniversary of the Mathematical Association of America. It deals with a short history of different kinds of natural numbers including triangular, square, pentagonal, hexagonal and k-gonal numbers, and their simple properties and their geometrical representations. Included are Euclid's and Pythagorean's main contributions to elementary number theory with the main contents of the Euclid Elements of the 13-volume masterpiece of mathematical work. This is followed by Euler's new discovery of the additive number theory based on partitions of numbers. Special attention is given to many examples, Euler's theorems on partitions of numbers with geometrical representations of Ferrers' graphs, Young's diagrams, Lagrange's four-square theorem and the celebrated Waring problem. Included are Euler's generating functions for the partitions of numbers, Euler's pentagonal number theorem, Gauss' triangular and square number theorems and the Jacobi triple product identity. Applications of the theory of partitions of numbers to different statistics such as the Bose- Einstein, Fermi- Dirac, Gentile, and Maxwell- Boltzmann statistics are briefly discussed. Special attention is given to pedagogical information through historical approach to number theory so that students and teachers at the school, college and university levels can become familiar with the basic concepts of partitions of numbers, partition functions and their modern applications, and can pursue advanced study and research in analytical and computational number theory.

  14. Topological defect clustering and plastic deformation mechanisms in functionalized graphene

    Science.gov (United States)

    Nunes, Ricardo; Araujo, Joice; Chacham, Helio

    2011-03-01

    We present ab initio results suggesting that strain plays a central role in the clustering of topological defects in strained and functionalized graphene models. We apply strain onto the topological-defect graphene networks from our previous work, and obtain topological-defect clustering patterns which are in excellent agreement with recent observations in samples of reduced graphene oxide. In our models, the graphene layer, containing an initial concentration of isolated topological defects, is covered by hydrogen or hydroxyl groups. Our results also suggest a rich variety of plastic deformation mechanism in functionalized graphene systems. We acknowledge support from the Brazilian agencies: CNPq, Fapemig, and INCT-Materiais de Carbono.

  15. Exact partition functions of Higgsed 5d TN theories

    International Nuclear Information System (INIS)

    Hayashi, Hirotaka; Zoccarato, Gianluca

    2015-01-01

    We present a general prescription by which we can systematically compute exact partition functions of five-dimensional supersymmetric theories which arise in Higgs branches of the T N theory. The theories may be realised by webs of 5-branes whose dual geometries are non-toric. We have checked our method by calculating the partition functions of the theories realised in various Higgs branches of the T 3 theory. A particularly interesting example is the E 8 theory which can be obtained by Higgsing the T 6 theory. We explicitly compute the partition function of the E 8 theory and find agreement with the field theory result as well as enhancement of the global symmetry to E 8 .

  16. Genus two partition functions of extremal conformal field theories

    International Nuclear Information System (INIS)

    Gaiotto, Davide; Yin Xi

    2007-01-01

    Recently Witten conjectured the existence of a family of 'extremal' conformal field theories (ECFTs) of central charge c = 24k, which are supposed to be dual to three-dimensional pure quantum gravity in AdS 3 . Assuming their existence, we determine explicitly the genus two partition functions of k = 2 and k = 3 ECFTs, using modular invariance and the behavior of the partition function in degenerating limits of the Riemann surface. The result passes highly nontrivial tests and in particular provides a piece of evidence for the existence of the k = 3 ECFT. We also argue that the genus two partition function of ECFTs with k ≤ 10 are uniquely fixed (if they exist)

  17. Approximation methods for the partition functions of anharmonic systems

    Energy Technology Data Exchange (ETDEWEB)

    Lew, P.; Ishida, T.

    1979-07-01

    The analytical approximations for the classical, quantum mechanical and reduced partition functions of the diatomic molecule oscillating internally under the influence of the Morse potential have been derived and their convergences have been tested numerically. This successful analytical method is used in the treatment of anharmonic systems. Using Schwinger perturbation method in the framework of second quantization formulism, the reduced partition function of polyatomic systems can be put into an expression which consists separately of contributions from the harmonic terms, Morse potential correction terms and interaction terms due to the off-diagonal potential coefficients. The calculated results of the reduced partition function from the approximation method on the 2-D and 3-D model systems agree well with the numerical exact calculations.

  18. Gauge fixing in the partition function for generalized quantum dynamics

    International Nuclear Information System (INIS)

    Adler, S.L.

    1998-01-01

    We discuss the problem of gauge fixing for the partition function in generalized quantum (or trace) dynamics, deriving analogs of the De Witt endash Faddeev endash Popov procedure and of the BRST invariance familiar in the functional integral context. copyright 1998 American Institute of Physics

  19. Partitions

    Directory of Open Access Journals (Sweden)

    Renata Biadacz

    2015-04-01

    Full Text Available The aim of the article is to present scientific and didactic achievements of Polish accounting at the turn of the 19th century. The first part of the study addresses key issues in the development of accounting science and practice on Polish territory during the Partitions period. In the second part, attention is focused on scientific achievements of J. Walicki, B. Wilmowski and P. Ciompa. The third part discusses the question of Polish accounting handbooks at the turn of the 19th century, as well as the state of accounting practice at that time and problems in the development of professional periodicals on Polish territory during the Partitions. The last part focuses on various perspectives on the nature of accounting in handbooks from the late 19th and early 20th century. The research method applied is literature study based on selected textbooks and scientific papers published in Polish language in the late 19th and early 20th centuries. The article provides a synthetic overview of the state of accounting knowledge and professional accounting periodicals on Polish soil during the Partitions, which had an impact on further development of accounting in Poland.

  20. Descriptive Topology in Selected Topics of Functional Analysis

    CERN Document Server

    Kakol, J; Pellicer, Manuel Lopez

    2011-01-01

    "Descriptive Topology in Selected Topics of Functional Analysis" is a collection of recent developments in the field of descriptive topology, specifically focused on the classes of infinite-dimensional topological vector spaces that appear in functional analysis. Such spaces include Frechet spaces, (LF)-spaces and their duals, and the space of continuous real-valued functions C(X) on a completely regular Hausdorff space X, to name a few. These vector spaces appear in functional analysis in distribution theory, differential equations, complex analysis, and various other analytical set

  1. Partition function of nearest neighbour Ising models: Some new ...

    Indian Academy of Sciences (India)

    Administrator

    insights. †. G NANDHINI and M V SANGARANARAYANAN*. Department of Chemistry, Indian Institute of Technology Madras, Chennai 600 036 e-mail: sangara@iitm.ac.in. Abstract. The partition function for one-dimensional nearest neighbour Ising models is estimated by summing all the energy terms in the Hamiltonian for ...

  2. Partition function of nearest neighbour Ising models: Some new ...

    Indian Academy of Sciences (India)

    Administrator

    While the formula- tion of the partition function pertaining to one- dimensional nearest neighbour Ising models is pedagogical and straight-forward,. 4 the same is not true for the two-dimensional Ising models. The cele- brated solution of Onsager. 5 for the two-dimensional. Ising model at H = 0 led to the detailed analysis of.

  3. Partition function of the two-dimensional nearest neighbour Ising ...

    Indian Academy of Sciences (India)

    y; J and H are assumed to be positive quantities. For a square lattice of 16 sites, our tour de force consists in deducing the partition function by systematically enumerating all the 65,536 configurations; this task is accomplished by employing Visual Basic programming in conjunction with the Excel software. The energies.

  4. Zeta Function Expression of Spin Partition Functions on Thermal AdS3

    Directory of Open Access Journals (Sweden)

    Floyd L.Williams

    2015-07-01

    Full Text Available We find a Selberg zeta function expression of certain one-loop spin partition functions on three-dimensional thermal anti-de Sitter space. Of particular interest is the partition function of higher spin fermionic particles. We also set up, in the presence of spin, a Patterson-type formula involving the logarithmic derivative of zeta.

  5. Topology

    CERN Document Server

    Hocking, John G

    1988-01-01

    ""As textbook and reference work, this is a valuable addition to the topological literature."" - Mathematical ReviewsDesigned as a text for a one-year first course in topology, this authoritative volume offers an excellent general treatment of the main ideas of topology. It includes a large number and variety of topics from classical topology as well as newer areas of research activity.There are four set-theoretic chapters, followed by four primarily algebraic chapters. Chapter I covers the fundamentals of topological and metrical spaces, mappings, compactness, product spaces, the Tychonoff t

  6. Many-body formalism for fermions: The partition function

    Science.gov (United States)

    Watson, D. K.

    2017-09-01

    The partition function, a fundamental tenet in statistical thermodynamics, contains in principle all thermodynamic information about a system. It encapsulates both microscopic information through the quantum energy levels and statistical information from the partitioning of the particles among the available energy levels. For identical particles, this statistical accounting is complicated by the symmetry requirements of the allowed quantum states. In particular, for Fermi systems, the enforcement of the Pauli principle is typically a numerically demanding task, responsible for much of the cost of the calculations. The interplay of these three elements—the structure of the many-body spectrum, the statistical partitioning of the N particles among the available levels, and the enforcement of the Pauli principle—drives the behavior of mesoscopic and macroscopic Fermi systems. In this paper, we develop an approach for the determination of the partition function, a numerically difficult task, for systems of strongly interacting identical fermions and apply it to a model system of harmonically confined, harmonically interacting fermions. This approach uses a recently introduced many-body method that is an extension of the symmetry-invariant perturbation method (SPT) originally developed for bosons. It uses group theory and graphical techniques to avoid the heavy computational demands of conventional many-body methods which typically scale exponentially with the number of particles. The SPT application of the Pauli principle is trivial to implement since it is done "on paper" by imposing restrictions on the normal-mode quantum numbers at first order in the perturbation. The method is applied through first order and represents an extension of the SPT method to excited states. Our method of determining the partition function and various thermodynamic quantities is accurate and efficient and has the potential to yield interesting insight into the role played by the Pauli

  7. String partition functions, Hilbert schemes and affine Lie algebra representations on homology groups

    International Nuclear Information System (INIS)

    Bonora, Loriano; Bytsenko, Andrey; Elizalde, Emilio

    2012-01-01

    This review paper contains a concise introduction to highest weight representations of infinite-dimensional Lie algebras, vertex operator algebras and Hilbert schemes of points, together with their physical applications to elliptic genera of superconformal quantum mechanics and superstring models. The common link of all these concepts and of the many examples considered in this paper is to be found in a very important feature of the theory of infinite-dimensional Lie algebras: the modular properties of the characters (generating functions) of certain representations. The characters of the highest weight modules represent the holomorphic parts of the partition functions on the torus for the corresponding conformal field theories. We discuss the role of the unimodular (and modular) groups and the (Selberg-type) Ruelle spectral functions of hyperbolic geometry in the calculation of elliptic genera and associated q-series. For mathematicians, elliptic genera are commonly associated with new mathematical invariants for spaces, while for physicists elliptic genera are one-loop string partition function. (Therefore, they are applicable, for instance, to topological Casimir effect calculations.) We show that elliptic genera can be conveniently transformed into product expressions, which can then inherit the homology properties of appropriate polygraded Lie algebras. This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical in honour of Stuart Dowker’s 75th birthday devoted to ‘Applications of zeta functions and other spectral functions in mathematics and physics’. (review)

  8. Topological properties and functionalities in oxide thin films and interfaces

    Science.gov (United States)

    Uchida, Masaki; Kawasaki, Masashi

    2018-04-01

    As symbolized by the Nobel Prize in Physics 2016, ‘topology’ has been recognized as an essential standpoint to understand and control the physics of condensed matter. This concept may be spreading even into application areas such as novel electronics. In this trend, there has been reported a number of studies for oxide films and heterostructures with topologically non-trivial electronic or magnetic states. In this review, we overview the trends of new topological properties and functionalities in oxide materials by sorting out a number of examples. The technological advances in oxide film growth achieved over the last few decades are now opening the door for harnessing novel topological properties.

  9. Potts model partition functions on two families of fractal lattices

    Science.gov (United States)

    Gong, Helin; Jin, Xian'an

    2014-11-01

    The partition function of q-state Potts model, or equivalently the Tutte polynomial, is computationally intractable for regular lattices. The purpose of this paper is to compute partition functions of q-state Potts model on two families of fractal lattices. Based on their self-similar structures and by applying the subgraph-decomposition method, we divide their Tutte polynomials into two summands, and for each summand we obtain a recursive formula involving the other summand. As a result, the number of spanning trees and their asymptotic growth constants, and a lower bound of the number of connected spanning subgraphs or acyclic root-connected orientations for each of such two lattices are obtained.

  10. High-temperature expansion of supersymmetric partition functions

    Energy Technology Data Exchange (ETDEWEB)

    Ardehali, Arash Arabi; Liu, James T. [Michigan Center for Theoretical Physics, Randall Laboratory of Physics,The University of Michigan, Ann Arbor, MI 48109-1040 (United States); Szepietowski, Phillip [Institute for Theoretical Physics & Spinoza Institute, Utrecht University, 3508 TD Utrecht (Netherlands)

    2015-07-22

    Di Pietro and Komargodski have recently demonstrated a four-dimensional counterpart of Cardy’s formula, which gives the leading high-temperature (β→0) behavior of supersymmetric partition functions Z{sup SUSY}(β). Focusing on superconformal theories, we elaborate on the subleading contributions to their formula when applied to free chiral and U(1) vector multiplets. In particular, we see that the high-temperature expansion of ln Z{sup SUSY}(β) terminates at order β{sup 0}. We also demonstrate how their formula must be modified when applied to SU(N) toric quiver gauge theories in the planar (N→∞) limit. Our method for regularizing the one-loop determinants of chiral and vector multiplets helps to clarify the relation between the 4d N=1 superconformal index and its corresponding supersymmetric partition function obtained by path-integration.

  11. Function spaces with uniform, fine and graph topologies

    CERN Document Server

    McCoy, Robert A; Jindal, Varun

    2018-01-01

    This book presents a comprehensive account of the theory of spaces of continuous functions under uniform, fine and graph topologies. Besides giving full details of known results, an attempt is made to give generalizations wherever possible, enriching the existing literature. The goal of this monograph is to provide an extensive study of the uniform, fine and graph topologies on the space C(X,Y) of all continuous functions from a Tychonoff space X to a metric space (Y,d); and the uniform and fine topologies on the space H(X) of all self-homeomorphisms on a metric space (X,d). The subject matter of this monograph is significant from the theoretical viewpoint, but also has applications in areas such as analysis, approximation theory and differential topology. Written in an accessible style, this book will be of interest to researchers as well as graduate students in this vibrant research area.

  12. Topology

    CERN Document Server

    Kuratowski, Kazimierz

    1968-01-01

    Topology, Volume II deals with topology and covers topics ranging from compact spaces and connected spaces to locally connected spaces, retracts, and neighborhood retracts. Group theory and some cutting problems are also discussed, along with the topology of the plane. Comprised of seven chapters, this volume begins with a discussion on the compactness of a topological space, paying particular attention to Borel, Lebesgue, Riesz, Cantor, and Bolzano-Weierstrass conditions. Semi-continuity and topics in dimension theory are also considered. The reader is then introduced to the connecte

  13. Commuting quantum circuits and complexity of Ising partition functions

    International Nuclear Information System (INIS)

    Fujii, Keisuke; Morimae, Tomoyuki

    2017-01-01

    Instantaneous quantum polynomial-time (IQP) computation is a class of quantum computation consisting only of commuting two-qubit gates and is not universal. Nevertheless, it has been shown that if there is a classical algorithm that can simulate IQP efficiently, the polynomial hierarchy collapses to the third level, which is highly implausible. However, the origin of the classical intractability is still less understood. Here we establish a relationship between IQP and computational complexity of calculating the imaginary-valued partition functions of Ising models. We apply the established relationship in two opposite directions. One direction is to find subclasses of IQP that are classically efficiently simulatable by using exact solvability of certain types of Ising models. Another direction is applying quantum computational complexity of IQP to investigate (im)possibility of efficient classical approximations of Ising partition functions with imaginary coupling constants. Specifically, we show that a multiplicative approximation of Ising partition functions is #P-hard for almost all imaginary coupling constants even on planar lattices of a bounded degree. (paper)

  14. Generalised partition functions: inferences on phase space distributions

    Directory of Open Access Journals (Sweden)

    R. A. Treumann

    2016-06-01

    Full Text Available It is demonstrated that the statistical mechanical partition function can be used to construct various different forms of phase space distributions. This indicates that its structure is not restricted to the Gibbs–Boltzmann factor prescription which is based on counting statistics. With the widely used replacement of the Boltzmann factor by a generalised Lorentzian (also known as the q-deformed exponential function, where κ = 1∕|q − 1|, with κ, q ∈ R both the kappa-Bose and kappa-Fermi partition functions are obtained in quite a straightforward way, from which the conventional Bose and Fermi distributions follow for κ → ∞. For κ ≠ ∞ these are subject to the restrictions that they can be used only at temperatures far from zero. They thus, as shown earlier, have little value for quantum physics. This is reasonable, because physical κ systems imply strong correlations which are absent at zero temperature where apart from stochastics all dynamical interactions are frozen. In the classical large temperature limit one obtains physically reasonable κ distributions which depend on energy respectively momentum as well as on chemical potential. Looking for other functional dependencies, we examine Bessel functions whether they can be used for obtaining valid distributions. Again and for the same reason, no Fermi and Bose distributions exist in the low temperature limit. However, a classical Bessel–Boltzmann distribution can be constructed which is a Bessel-modified Lorentzian distribution. Whether it makes any physical sense remains an open question. This is not investigated here. The choice of Bessel functions is motivated solely by their convergence properties and not by reference to any physical demands. This result suggests that the Gibbs–Boltzmann partition function is fundamental not only to Gibbs–Boltzmann but also to a large class of generalised Lorentzian distributions as well as to the

  15. Finite volume gauge theory partition functions in three dimensions

    International Nuclear Information System (INIS)

    Szabo, Richard J.

    2005-01-01

    We determine the fermion mass dependence of Euclidean finite volume partition functions for three-dimensional QCD in the ε-regime directly from the effective field theory of the pseudo-Goldstone modes by using zero-dimensional non-linear σ-models. New results are given for an arbitrary number of flavours in all three cases of complex, pseudo-real and real fermions, extending some previous considerations based on random matrix theory. They are used to describe the microscopic spectral correlation functions and smallest eigenvalue distributions of the QCD 3 Dirac operator, as well as the corresponding massive spectral sum rules

  16. Functional Topology of Evolving Urban Drainage Networks

    Science.gov (United States)

    Yang, Soohyun; Paik, Kyungrock; McGrath, Gavan S.; Urich, Christian; Krueger, Elisabeth; Kumar, Praveen; Rao, P. Suresh C.

    2017-11-01

    We investigated the scaling and topology of engineered urban drainage networks (UDNs) in two cities, and further examined UDN evolution over decades. UDN scaling was analyzed using two power law scaling characteristics widely employed for river networks: (1) Hack's law of length (L)-area (A) [L∝Ah] and (2) exceedance probability distribution of upstream contributing area (δ) [P>(A≥δ>)˜aδ-ɛ]. For the smallest UDNs ((A≥δ>) plots for river networks are abruptly truncated, those for UDNs display exponential tempering [P>(A≥δ>)=aδ-ɛexp⁡>(-cδ>)]. The tempering parameter c decreases as the UDNs grow, implying that the distribution evolves in time to resemble those for river networks. However, the power law exponent ɛ for large UDNs tends to be greater than the range reported for river networks. Differences in generative processes and engineering design constraints contribute to observed differences in the evolution of UDNs and river networks, including subnet heterogeneity and nonrandom branching.

  17. Non-Perturbative Nekrasov Partition Function from String Theory

    CERN Document Server

    Antoniadis, Ignatios; Hohenegger, Stefan; Narain, K S; Assi, Ahmad Zein

    2014-01-01

    We calculate gauge instanton corrections to a class of higher derivative string effective couplings introduced in [1]. We work in Type I string theory compactified on K3xT2 and realise gauge instantons in terms of D5-branes wrapping the internal space. In the field theory limit we reproduce the deformed ADHM action on a general {\\Omega}-background from which one can compute the non-perturbative gauge theory partition function using localisation. This is a non-perturbative extension of [1] and provides further evidence for our proposal of a string theory realisation of the {\\Omega}-background.

  18. Holographic partition functions and phases for higher genus Riemann surfaces

    International Nuclear Information System (INIS)

    Maxfield, Henry; Ross, Simon F; Way, Benson

    2016-01-01

    We describe a numerical method to compute the action of Euclidean saddle points for the partition function of a two-dimensional holographic CFT on a Riemann surface of arbitrary genus, with constant curvature metric. We explicitly evaluate the action for the saddles for genus two and map out the phase structure of dominant bulk saddles in a two-dimensional subspace of the moduli space. We discuss spontaneous breaking of discrete symmetries, and show that the handlebody bulk saddles always dominate over certain non-handlebody solutions. (paper)

  19. Minimal models on Riemann surfaces: The partition functions

    International Nuclear Information System (INIS)

    Foda, O.

    1990-01-01

    The Coulomb gas representation of the A n series of c=1-6/[m(m+1)], m≥3, minimal models is extended to compact Riemann surfaces of genus g>1. An integral representation of the partition functions, for any m and g is obtained as the difference of two gaussian correlation functions of a background charge, (background charge on sphere) x (1-g), and screening charges integrated over the surface. The coupling constant x (compacitification radius) 2 of the gaussian expressions are, as on the torus, m(m+1), and m/(m+1). The partition functions obtained are modular invariant, have the correct conformal anomaly and - restricting the propagation of states to a single handle - one can verify explicitly the decoupling of the null states. On the other hand, they are given in terms of coupled surface integrals, and it remains to show how they degenerate consistently to those on lower-genus surfaces. In this work, this is clear only at the lattice level, where no screening charges appear. (orig.)

  20. Minimal models on Riemann surfaces: The partition functions

    Energy Technology Data Exchange (ETDEWEB)

    Foda, O. (Katholieke Univ. Nijmegen (Netherlands). Inst. voor Theoretische Fysica)

    1990-06-04

    The Coulomb gas representation of the A{sub n} series of c=1-6/(m(m+1)), m{ge}3, minimal models is extended to compact Riemann surfaces of genus g>1. An integral representation of the partition functions, for any m and g is obtained as the difference of two gaussian correlation functions of a background charge, (background charge on sphere) x (1-g), and screening charges integrated over the surface. The coupling constant x (compacitification radius){sup 2} of the gaussian expressions are, as on the torus, m(m+1), and m/(m+1). The partition functions obtained are modular invariant, have the correct conformal anomaly and - restricting the propagation of states to a single handle - one can verify explicitly the decoupling of the null states. On the other hand, they are given in terms of coupled surface integrals, and it remains to show how they degenerate consistently to those on lower-genus surfaces. In this work, this is clear only at the lattice level, where no screening charges appear. (orig.).

  1. Higher genus partition functions of meromorphic conformal field theories

    International Nuclear Information System (INIS)

    Gaberdiel, Matthias R.; Volpato, Roberto

    2009-01-01

    It is shown that the higher genus vacuum amplitudes of a meromorphic conformal field theory determine the affine symmetry of the theory uniquely, and we give arguments that suggest that also the representation content with respect to this affine symmetry is specified, up to automorphisms of the finite Lie algebra. We illustrate our findings with the self-dual theories at c = 16 and c = 24; in particular, we give an elementary argument that shows that the vacuum amplitudes of the E 8 x E 8 theory and the Spin(32)/Z 2 theory differ at genus g = 5. The fact that the discrepancy only arises at rather high genus is a consequence of the modular properties of higher genus amplitudes at small central charges. In fact, we show that for c ≤ 24 the genus one partition function specifies already the partition functions up to g ≤ 4 uniquely. Finally we explain how our results generalise to non-meromorphic conformal field theories.

  2. Colour-independent partition functions in coloured vertex models

    Energy Technology Data Exchange (ETDEWEB)

    Foda, O., E-mail: omar.foda@unimelb.edu.au [Dept. of Mathematics and Statistics, University of Melbourne, Parkville, VIC 3010 (Australia); Wheeler, M., E-mail: mwheeler@lpthe.jussieu.fr [Laboratoire de Physique Théorique et Hautes Energies, CNRS UMR 7589 (France); Université Pierre et Marie Curie – Paris 6, 4 place Jussieu, 75252 Paris cedex 05 (France)

    2013-06-11

    We study lattice configurations related to S{sub n}, the scalar product of an off-shell state and an on-shell state in rational A{sub n} integrable vertex models, n∈{1,2}. The lattice lines are colourless and oriented. The state variables are n conserved colours that flow along the line orientations, but do not necessarily cover every bond in the lattice. Choosing boundary conditions such that the positions where the colours flow into the lattice are fixed, and where they flow out are summed over, we show that the partition functions of these configurations, with these boundary conditions, are n-independent. Our results extend to trigonometric A{sub n} models, and to all n. This n-independence explains, in vertex-model terms, results from recent studies of S{sub 2} (Caetano and Vieira, 2012, [1], Wheeler, (arXiv:1204.2089), [2]). Namely, 1.S{sub 2}, which depends on two sets of Bethe roots, {b_1} and {b_2}, and cannot (as far as we know) be expressed in single determinant form, degenerates in the limit {b_1}→∞, and/or {b_2}→∞, into a product of determinants, 2. Each of the latter determinants is an A{sub 1} vertex-model partition function.

  3. Colour-independent partition functions in coloured vertex models

    International Nuclear Information System (INIS)

    Foda, O.; Wheeler, M.

    2013-01-01

    We study lattice configurations related to S n , the scalar product of an off-shell state and an on-shell state in rational A n integrable vertex models, n∈{1,2}. The lattice lines are colourless and oriented. The state variables are n conserved colours that flow along the line orientations, but do not necessarily cover every bond in the lattice. Choosing boundary conditions such that the positions where the colours flow into the lattice are fixed, and where they flow out are summed over, we show that the partition functions of these configurations, with these boundary conditions, are n-independent. Our results extend to trigonometric A n models, and to all n. This n-independence explains, in vertex-model terms, results from recent studies of S 2 (Caetano and Vieira, 2012, [1], Wheeler, (arXiv:1204.2089), [2]). Namely, 1.S 2 , which depends on two sets of Bethe roots, {b 1 } and {b 2 }, and cannot (as far as we know) be expressed in single determinant form, degenerates in the limit {b 1 }→∞, and/or {b 2 }→∞, into a product of determinants, 2. Each of the latter determinants is an A 1 vertex-model partition function

  4. Topological vertex, string amplitudes and spectral functions of hyperbolic geometry

    Energy Technology Data Exchange (ETDEWEB)

    Guimaraes, M.E.X.; Rosa, T.O. [Universidade Federal Fluminense, Instituto de Fisica, Av. Gal. Milton Tavares de Souza, s/n, CEP 24210-346, Niteroi, RJ (Brazil); Luna, R.M. [Universidade Estadual de Londrina, Departamento de Fisica, Caixa Postal 6001, Londrina, Parana (Brazil)

    2014-05-15

    We discuss the homological aspects of the connection between quantum string generating function and the formal power series associated to the dimensions of chains and homologies of suitable Lie algebras. Our analysis can be considered as a new straightforward application of the machinery of modular forms and spectral functions (with values in the congruence subgroup of SL(2,Z)) to the partition functions of Lagrangian branes, refined vertex and open string partition functions, represented by means of formal power series that encode Lie algebra properties. The common feature in our examples lies in the modular properties of the characters of certain representations of the pertinent affine Lie algebras and in the role of Selberg-type spectral functions of a hyperbolic three-geometry associated with q-series in the computation of the string amplitudes. (orig.)

  5. Refined topological strings on local ℙ2

    International Nuclear Information System (INIS)

    Iqbal, Amer; Kozçaz, Can

    2017-01-01

    We calculate the refined topological string partition function of the Calabi-Yau threefold which is the total space of the canonical bundle on ℙ 2 (the local ℙ 2 ). The refined topological vertex formalism can not be directly applied to local ℙ 2 therefore we use the properties of the refined Hopf link to define a new two legged vertex which together with the refined vertex gives the partition function of the local ℙ 2 .

  6. Topological string in harmonic space and correlation functions in S3 stringy cosmology

    International Nuclear Information System (INIS)

    Saidi, El Hassan; Sedra, Moulay Brahim

    2006-01-01

    We develop the harmonic space method for conifold and use it to study local complex deformations of T*S 3 preserving manifestly SL(2,C) isometry. We derive the perturbative manifestly SL(2,C) invariant partition function Z top of topological string B model on locally deformed conifold. Generic n momentum and winding modes of 2D c=1 noncritical theory are described by highest υ (n,0) and lowest components υ (0,n) of SL(2,C) spin s=n2 multiplets (υ (n-k,k) ), 0= α + and V α - . We also derive a dictionary giving the passage from Laurent (Fourier) analysis on T*S 1 (S 1 ) to the harmonic method on T*S 3 (S 3 ). The manifestly SU(2,C) covariant correlation functions of the S 3 quantum cosmology model of Gukov-Saraikin-Vafa are also studied

  7. The partition function of an interacting many body system

    International Nuclear Information System (INIS)

    Rummel, C.; Ankerhold, J.

    2002-01-01

    Based on the path integral approach the partition function of a many body system with separable two body interaction is calculated in the sense of a semiclassical approximation. The commonly used Gaussian type of approximation, known as the perturbed static path approximation (PSPA), breaks down near a crossover temperature due to instabilities of the classical mean field solution. It is shown how the PSPA is systematically improved within the crossover region by taking into account large non-Gaussian fluctuation and an approximation applicable down to very low temperatures is carried out. These findings are tested against exact results for the archetypical cases of a particle moving in a one dimensional double well and the exactly solvable Lipkin-Meshkov-Glick model. The extensions should have applications in finite systems at low temperatures as in nuclear physics and mesoscopic systems, e. g. for gap fluctuations in nano-scale superconducting devices previously studied within a PSPA type of approximation. (author)

  8. Natural Microbial Assemblages Reflect Distinct Organismal and Functional Partitioning

    Science.gov (United States)

    Wilmes, P.; Andersson, A.; Kalnejais, L. H.; Verberkmoes, N. C.; Lefsrud, M. G.; Wexler, M.; Singer, S. W.; Shah, M.; Bond, P. L.; Thelen, M. P.; Hettich, R. L.; Banfield, J. F.

    2007-12-01

    The ability to link microbial community structure to function has long been a primary focus of environmental microbiology. With the advent of community genomic and proteomic techniques, along with advances in microscopic imaging techniques, it is now possible to gain insights into the organismal and functional makeup of microbial communities. Biofilms growing within highly acidic solutions inside the Richmond Mine (Iron Mountain, Redding, California) exhibit distinct macro- and microscopic morphologies. They are composed of microorganisms belonging to the three domains of life, including archaea, bacteria and eukarya. The proportion of each organismal type depends on sampling location and developmental stage. For example, mature biofilms floating on top of acid mine drainage (AMD) pools exhibit layers consisting of a densely packed bottom layer of the chemoautolithotroph Leptospirillum group II, a less dense top layer composed mainly of archaea, and fungal filaments spanning across the entire biofilm. The expression of cytochrome 579 (the most highly abundant protein in the biofilm, believed to be central to iron oxidation and encoded by Leptospirillum group II) is localized at the interface of the biofilm with the AMD solution, highlighting that biofilm architecture is reflected at the functional gene expression level. Distinct functional partitioning is also apparent in a biological wastewater treatment system that selects for distinct polyphosphate accumulating organisms. Community genomic data from " Candidatus Accumulibacter phosphatis" dominated activated sludge has enabled high mass-accuracy shotgun proteomics for identification of key metabolic pathways. Comprehensive genome-wide alignment of orthologous proteins suggests distinct partitioning of protein variants involved in both core-metabolism and specific metabolic pathways among the dominant population and closely related species. In addition, strain- resolved proteogenomic analysis of the AMD biofilms

  9. On πgp-continuous functions in topological spaces

    International Nuclear Information System (INIS)

    Park, Jin Han; Park, Jin Keun

    2004-01-01

    The concept of πgp-closed sets was introduced by Park [On πgp-closed sets in topological spaces, Indian J. Pure Appl. Math., in press]. The aim of this paper is to consider and characterize πgp-irresolute and πgp-continuous functions via the concept of πgp-closed sets and to relate these concepts to the classes of πGPO-compact spaces and πGP-connected spaces

  10. Topological and functional characterization of an insect gustatory receptor.

    Directory of Open Access Journals (Sweden)

    Hui-Jie Zhang

    Full Text Available Insect gustatory receptors are predicted to have a seven-transmembrane structure and are distantly related to insect olfactory receptors, which have an inverted topology compared with G-protein coupled receptors, including mammalian olfactory receptors. In contrast, the topology of insect gustatory receptors remains unknown. Except for a few examples from Drosophila, the specificity of individual insect gustatory receptors is also unknown. In this study, the total number of identified gustatory receptors in Bombyx mori was expanded from 65 to 69. BmGr8, a silkmoth gustatory receptor from the sugar receptor subfamily, was expressed in insect cells. Membrane topology studies on BmGr8 indicate that, like insect olfactory receptors, it has an inverted topology relative to G protein-coupled receptors. An orphan GR from the bitter receptor family, BmGr53, yielded similar results. We infer, from the finding that two distantly related BmGrs have an intracellular N-terminus and an odd number of transmembrane spans, that this is likely to be a general topology for all insect gustatory receptors. We also show that BmGr8 functions independently in Sf9 cells and responds in a concentration-dependent manner to the polyalcohols myo-inositol and epi-inositol but not to a range of mono- and di-saccharides. BmGr8 is the first chemoreceptor shown to respond specifically to inositol, an important or essential nutrient for some Lepidoptera. The selectivity of BmGr8 responses is consistent with the known responses of one of the gustatory receptor neurons in the lateral styloconic sensilla of B. mori, which responds to myo-inositol and epi-inositol but not to allo-inositol.

  11. Topological and functional characterization of an insect gustatory receptor.

    Science.gov (United States)

    Zhang, Hui-Jie; Anderson, Alisha R; Trowell, Stephen C; Luo, A-Rong; Xiang, Zhong-Huai; Xia, Qing-You

    2011-01-01

    Insect gustatory receptors are predicted to have a seven-transmembrane structure and are distantly related to insect olfactory receptors, which have an inverted topology compared with G-protein coupled receptors, including mammalian olfactory receptors. In contrast, the topology of insect gustatory receptors remains unknown. Except for a few examples from Drosophila, the specificity of individual insect gustatory receptors is also unknown. In this study, the total number of identified gustatory receptors in Bombyx mori was expanded from 65 to 69. BmGr8, a silkmoth gustatory receptor from the sugar receptor subfamily, was expressed in insect cells. Membrane topology studies on BmGr8 indicate that, like insect olfactory receptors, it has an inverted topology relative to G protein-coupled receptors. An orphan GR from the bitter receptor family, BmGr53, yielded similar results. We infer, from the finding that two distantly related BmGrs have an intracellular N-terminus and an odd number of transmembrane spans, that this is likely to be a general topology for all insect gustatory receptors. We also show that BmGr8 functions independently in Sf9 cells and responds in a concentration-dependent manner to the polyalcohols myo-inositol and epi-inositol but not to a range of mono- and di-saccharides. BmGr8 is the first chemoreceptor shown to respond specifically to inositol, an important or essential nutrient for some Lepidoptera. The selectivity of BmGr8 responses is consistent with the known responses of one of the gustatory receptor neurons in the lateral styloconic sensilla of B. mori, which responds to myo-inositol and epi-inositol but not to allo-inositol.

  12. Smoothed analysis of partitioning algorithms for Euclidean functionals

    NARCIS (Netherlands)

    Bläser, Markus; Manthey, Bodo; Rao, B.V. Raghavendra; Dehne, F.; Iacono, J.; Sack, J.-R.

    2011-01-01

    Euclidean optimization problems such as TSP and minimum-length matching admit fast partitioning algorithms that compute near-optimal solutions on typical instances. We develop a general framework for the application of smoothed analysis to partitioning algorithms for Euclidean optimization problems.

  13. Canonical partition functions: ideal quantum gases, interacting classical gases, and interacting quantum gases

    Science.gov (United States)

    Zhou, Chi-Chun; Dai, Wu-Sheng

    2018-02-01

    In statistical mechanics, for a system with a fixed number of particles, e.g. a finite-size system, strictly speaking, the thermodynamic quantity needs to be calculated in the canonical ensemble. Nevertheless, the calculation of the canonical partition function is difficult. In this paper, based on the mathematical theory of the symmetric function, we suggest a method for the calculation of the canonical partition function of ideal quantum gases, including ideal Bose, Fermi, and Gentile gases. Moreover, we express the canonical partition functions of interacting classical and quantum gases given by the classical and quantum cluster expansion methods in terms of the Bell polynomial in mathematics. The virial coefficients of ideal Bose, Fermi, and Gentile gases are calculated from the exact canonical partition function. The virial coefficients of interacting classical and quantum gases are calculated from the canonical partition function by using the expansion of the Bell polynomial, rather than calculated from the grand canonical potential.

  14. Characterisations of Partition of Unities Generated by Entire Functions in Cd

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2017-01-01

    Collections of functions forming a partition of unity play an important role in analysis. In this paper we characterise for any N∈N the entire functions P for which the partition of unity condition ∑n∈ZdP(x+n)χ[0,N]d(x+n)=1 holds for all x∈Rd. The general characterisation leads to various easy wa...

  15. On entire functions restricted to intervals, partition of unities, and dual Gabor frames

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2014-01-01

    Partition of unities appears in many places in analysis. Typically it is generated by compactly supported functions with a certain regularity. In this paper we consider partition of unities obtained as integer-translates of entire functions restricted to finite intervals. We characterize the enti...

  16. Stringy instanton counting and topological strings

    Science.gov (United States)

    Manabe, Masahide

    2015-07-01

    We study the stringy instanton partition function of four dimensional U( N) supersymmetric gauge theory which was obtained by Bonelli et al. in 2013. In type IIB string theory on , the stringy U( N) instantons of charge k are described by k D1-branes wrapping around the bound to N D5-branes on . The KK corrections induced by compactification of the give the stringy corrections. We find a relation between the stringy instanton partition function whose quantum stringy corrections have been removed and the K-theoretic instanton partition function, or by geometric engineering, the refined topological A-model partition function on a local toric Calabi-Yau threefold. We also study the quantum stringy corrections in the stringy instanton partition function which is not captured by the refined topological strings.

  17. Topological characteristics of multi-valued maps and Lipschitzian functionals

    International Nuclear Information System (INIS)

    Klimov, V S

    2008-01-01

    This paper deals with the operator inclusion O element of F(x)+N Q (x), where F is a multi-valued map of monotonic type from a reflexive space V to its conjugate V * and N Q is the cone normal to the closed set Q, which, generally speaking, is not convex. To estimate the number of solutions of this inclusion we introduce topological characteristics of multi-valued maps and Lipschitzian functionals that have the properties of additivity and homotopy invariance. We prove some infinite-dimensional versions of the Poincare-Hopf theorem

  18. Operator bases, S-matrices, and their partition functions

    Science.gov (United States)

    Henning, Brian; Lu, Xiaochuan; Melia, Tom; Murayama, Hitoshi

    2017-10-01

    Relativistic quantum systems that admit scattering experiments are quantitatively described by effective field theories, where S-matrix kinematics and symmetry considerations are encoded in the operator spectrum of the EFT. In this paper we use the S-matrix to derive the structure of the EFT operator basis, providing complementary descriptions in (i) position space utilizing the conformal algebra and cohomology and (ii) momentum space via an algebraic formulation in terms of a ring of momenta with kinematics implemented as an ideal. These frameworks systematically handle redundancies associated with equations of motion (on-shell) and integration by parts (momentum conservation). We introduce a partition function, termed the Hilbert series, to enumerate the operator basis — correspondingly, the S-matrix — and derive a matrix integral expression to compute the Hilbert series. The expression is general, easily applied in any spacetime dimension, with arbitrary field content and (linearly realized) symmetries. In addition to counting, we discuss construction of the basis. Simple algorithms follow from the algebraic formulation in momentum space. We explicitly compute the basis for operators involving up to n = 5 scalar fields. This construction universally applies to fields with spin, since the operator basis for scalars encodes the momentum dependence of n-point amplitudes. We discuss in detail the operator basis for non-linearly realized symmetries. In the presence of massless particles, there is freedom to impose additional structure on the S- matrix in the form of soft limits. The most na¨ıve implementation for massless scalars leads to the operator basis for pions, which we confirm using the standard CCWZ formulation for non-linear realizations. Although primarily discussed in the language of EFT, some of our results — conceptual and quantitative — may be of broader use in studying conformal field theories as well as the AdS/CFT correspondence.

  19. Partition functions of perturbed minimal models and background dependent free energy of string field theory

    International Nuclear Information System (INIS)

    Ghoshal, D.; Sen, A.

    1991-01-01

    We calculate the partition function of the (ρ, ρ + 1) minimal model, perturbed by the operators φ 1.3 and φ 3.1 , to leading order in 1/ρ, and show that the result agrees with the partition functions of the (ρ-1, ρ) and (ρ+1, ρ+2) minimal models respectively. We also relate the change in the partition function of a conformal field theory under a perturbation to a change in the free energy of appropriate string field theory due to a change in the background. (orig.)

  20. Canonical partition functions: ideal quantum gases, interacting classical gases, and interacting quantum gases

    OpenAIRE

    Zhou, Chi-Chun; Dai, Wu-Sheng

    2017-01-01

    In statistical mechanics, for a system with fixed number of particles, e.g., a finite-size system, strictly speaking, the thermodynamic quantity needs to be calculated in the canonical ensemble. Nevertheless, the calculation of the canonical partition function is difficult; even the canonical partition function of ideal Bose and Fermi gases cannot be obtained exactly. In this paper, based on the mathematical theory of the symmetric function and the Bell polynomial, we suggest a method for the...

  1. Topological field theory amplitudes for A{sub N−1} fibration

    Energy Technology Data Exchange (ETDEWEB)

    Iqbal, Amer [Department of Physics, School of Science & Engineering, LUMS,Opposite U-Block, D.H.A, Lahore (Pakistan); Center of Mathematical Sciences and Applications, Harvard University,1 Oxford Street, Cambridge, MA 02138 (United States); Abdus Salam School of Mathematical Sciences,Wahdat Road, New Muslim Town, Lahore (Pakistan); Khan, Ahsan Z.; Qureshi, Babar A. [Department of Physics, School of Science & Engineering, LUMS,Opposite U-Block, D.H.A, Lahore (Pakistan); Shabbir, Khurram [Department of Mathematics, Government College University,Katchery Road, Lahore, 54000 (Pakistan); Shehper, Muhammad A. [Department of Physics, School of Science & Engineering, LUMS,Opposite U-Block, D.H.A, Lahore (Pakistan)

    2015-12-02

    We study the partition function N=1 5D U(N) gauge theory with g adjoint hypermultiplets and show that for massless adjoint hypermultiplets it is equal to the partition function of a two dimensional topological field on a genus g Riemann surface. We describe the topological field theory by its amplitudes associated with cap, propagator and pair of pants. These basic amplitudes are open topological string amplitudes associated with certain Calabi-Yau threefolds in the presence of Lagrangian branes.

  2. Invertebrate diversity classification using self-organizing map neural network: with some special topological functions

    OpenAIRE

    WenJun Zhang; QuHuan Li

    2014-01-01

    In present study we used self-organizing map (SOM) neural network to conduct the non-supervisory clustering of invertebrate orders in rice field. Four topological functions, i.e., cossintopf, sincostopf, acossintopf, and expsintopf, established on the template in toolbox of Matlab, were used in SOM neural network learning. Results showed that clusters were different when using different topological functions because different topological functions will generate different spatial structure of ...

  3. Partitioning taxonomic diversity of aquatic insect assemblages and functional feeding groups in Neotropical Savanna headwater streams

    Science.gov (United States)

    Biological diversity can be divided into: alpha (α, local), beta (β, difference in assemblage composition among locals), and gamma (γ, total diversity). We assessed the partitioning of taxonomic diversity of Ephemeroptera, Plecoptera and Trichoptera (EPT) and of functional feedin...

  4. Refined Partition Functions for Open Superstrings with 4, 8 and 16 Supercharges

    CERN Document Server

    Lust, Dieter; Schlotterer, Oliver; Thomson, Andrew

    2013-01-01

    We analyse the perturbative massive open string spectrum of even dimensional superstring compactifications with four, eight and sixteen supercharges. In each of such cases, we focus on universal states that exist independently on the internal geometry and other compatification details. We analytically compute refined partition functions that count these states at each mass level. Such refined partition functions are written in a super-Poincare covariant form, providing information on how supermultiplets transform under the little group and the R symmetry. Various asymptotic limits of the partition functions and their associated quantities, such as the leading and subleading Regge trajectories, are studied empirically and analytically. In the phenomenologically relevant case of four supercharges, the partition function can be cast into the most compact form and the asymptotic formula in the large spin limit is derived explicitly.

  5. Novel Online Dimensionality Reduction Method with Improved Topology Representing and Radial Basis Function Networks

    Science.gov (United States)

    Ni, Shengqiao; Lv, Jiancheng; Cheng, Zhehao; Li, Mao

    2015-01-01

    This paper presents improvements to the conventional Topology Representing Network to build more appropriate topology relationships. Based on this improved Topology Representing Network, we propose a novel method for online dimensionality reduction that integrates the improved Topology Representing Network and Radial Basis Function Network. This method can find meaningful low-dimensional feature structures embedded in high-dimensional original data space, process nonlinear embedded manifolds, and map the new data online. Furthermore, this method can deal with large datasets for the benefit of improved Topology Representing Network. Experiments illustrate the effectiveness of the proposed method. PMID:26161960

  6. Novel Online Dimensionality Reduction Method with Improved Topology Representing and Radial Basis Function Networks.

    Directory of Open Access Journals (Sweden)

    Shengqiao Ni

    Full Text Available This paper presents improvements to the conventional Topology Representing Network to build more appropriate topology relationships. Based on this improved Topology Representing Network, we propose a novel method for online dimensionality reduction that integrates the improved Topology Representing Network and Radial Basis Function Network. This method can find meaningful low-dimensional feature structures embedded in high-dimensional original data space, process nonlinear embedded manifolds, and map the new data online. Furthermore, this method can deal with large datasets for the benefit of improved Topology Representing Network. Experiments illustrate the effectiveness of the proposed method.

  7. Novel Online Dimensionality Reduction Method with Improved Topology Representing and Radial Basis Function Networks.

    Science.gov (United States)

    Ni, Shengqiao; Lv, Jiancheng; Cheng, Zhehao; Li, Mao

    2015-01-01

    This paper presents improvements to the conventional Topology Representing Network to build more appropriate topology relationships. Based on this improved Topology Representing Network, we propose a novel method for online dimensionality reduction that integrates the improved Topology Representing Network and Radial Basis Function Network. This method can find meaningful low-dimensional feature structures embedded in high-dimensional original data space, process nonlinear embedded manifolds, and map the new data online. Furthermore, this method can deal with large datasets for the benefit of improved Topology Representing Network. Experiments illustrate the effectiveness of the proposed method.

  8. Sound intensity as a function of sound insulation partition

    OpenAIRE

    Cvetkovic, S.; Prascevic, R.

    1994-01-01

    In the modern engineering practice, the sound insulation of the partitions is the synthesis of the theory and of the experience acquired in the procedure of the field and of the laboratory measurement. The science and research public treat the sound insulation in the context of the emission and propagation of the acoustic energy in the media with the different acoustics impedance. In this paper, starting from the essence of physical concept of the intensity as the energy vector, the authors g...

  9. On the analytical evaluation of the partition function for unit hypercubes in four dimensions

    International Nuclear Information System (INIS)

    Hari Dass, N.D.

    1984-10-01

    The group integrations required for the analytic evaluation of the partition function for unit hypercubes in four dimensions are carried out. Modifications of the graphical rules for SU 2 group integrations cited in the literature are developed for this purpose. A complete classification of all surfaces that can be embedded in the unit hypercube is given and their individual contribution to the partition function worked out. Applications are discussed briefly. (orig.)

  10. ( p, q)-webs of DIM representations, 5d N=1 instanton partition functions and qq-characters

    Science.gov (United States)

    Bourgine, J.-E.; Fukuda, M.; Harada, K.; Matsuo, Y.; Zhu, R.-D.

    2017-11-01

    Instanton partition functions of N=1 5d Super Yang-Mills reduced on S 1 can be engineered in type IIB string theory from the ( p, q)-branes web diagram. To this diagram is superimposed a web of representations of the Ding-Iohara-Miki (DIM) algebra that acts on the partition function. In this correspondence, each segment is associated to a representation, and the (topological string) vertex is identified with the intertwiner operator constructed by Awata, Feigin and Shiraishi. We define a new intertwiner acting on the representation spaces of levels (1, n) ⊗ (0, m) → (1, n + m), thereby generalizing to higher rank m the original construction. It allows us to use a folded version of the usual ( p, q)-web diagram, bringing great simplifications to actual computations. As a result, the characterization of Gaiotto states and vertical intertwiners, previously obtained by some of the authors, is uplifted to operator relations acting in the Fock space of horizontal representations. We further develop a method to build qq-characters of linear quivers based on the horizontal action of DIM elements. While fundamental qq-characters can be built using the coproduct, higher ones require the introduction of a (quantum) Weyl reflection acting on tensor products of DIM generators.

  11. 1-loop partition function in AdS{sub 3}/CFT{sub 2}

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Bin [Department of Physics and State Key Laboratory of Nuclear Physics and Technology,Peking University,5 Yiheyuan Rd, Beijing 100871 (China); Collaborative Innovation Center of Quantum Matter,5 Yiheyuan Rd, Beijing 100871 (China); Center for High Energy Physics, Peking University,5 Yiheyuan Rd, Beijing 100871 (China); Wu, Jie-qiang [Department of Physics and State Key Laboratory of Nuclear Physics and Technology,Peking University,5 Yiheyuan Rd, Beijing 100871 (China)

    2015-12-16

    The 1-loop partition function of the handlebody solutions in the AdS{sub 3} gravity have been derived some years ago using the heat kernel techniques and the method of images. In the semiclassical limit, such partition function should correspond to the order O(c{sup 0}) part in the partition function of dual conformal field theory(CFT) on the boundary Riemann surface. The higher genus partition function could be computed by the multi-point functions in the Riemann sphere via sewing prescription. In the large central charge limit, the CFT is effectively free in the sense that to the leading order of c the multi-point function is further simplified to be a summation over the products of two-point functions of single-particle states. Correspondingly in the bulk, the graviton is freely propagating without interaction. Furthermore the product of the two-point functions may define the links, each of which is in one-to-one correspondence with the conjugacy class of the Schottky group of the Riemann surface. Moreover, the value of a link is determined by the multiplier of the element in the conjugacy class. This allows us to reproduce exactly the gravitational 1-loop partition function. The proof can be generalized to the higher spin gravity and its dual CFT.

  12. Weakly semi-preopen “semi-preclosed” functions in L-double fuzzy topological spaces

    Directory of Open Access Journals (Sweden)

    A. Ghareeb

    2016-07-01

    Full Text Available In this paper, we introduce a new class of functions called L-double fuzzy weakly semi-preopen (semi-preclosed functions in L-double fuzzy topological spaces. Some characterizations of this class and its properties and the relationship with other classes in L-double fuzzy topological spaces are also discussed.

  13. Brain hubs in lesion models: Predicting functional network topology with lesion patterns in patients.

    Science.gov (United States)

    Yuan, Binke; Fang, Yuxing; Han, Zaizhu; Song, Luping; He, Yong; Bi, Yanchao

    2017-12-20

    Various important topological properties of healthy brain connectome have recently been identified. However, the manner in which brain lesion changes the functional network topology is unknown. We examined how critical specific brain areas are in the maintenance of network topology using multivariate support vector regression analysis on brain structural and resting-state functional imaging data in 96 patients with brain damages. Patients' cortical lesion distribution patterns could significantly predict the functional network topology and a set of regions with significant weights in the prediction models were identified as "lesion hubs". Intriguingly, we found two different types of lesion hubs, whose lesions associated with changes of network topology towards relatively different directions, being either more integrated (global) or more segregated (local), and correspond to hubs identified in healthy functional network in complex manners. Our results pose further important questions about the potential dynamics of the functional brain network after brain damage.

  14. Coexistence via resource partitioning fails to generate an increase in community function.

    Directory of Open Access Journals (Sweden)

    John P DeLong

    Full Text Available Classic ecological theory suggests that resource partitioning facilitates the coexistence of species by reducing inter-specific competition. A byproduct of this process is an increase in overall community function, because a greater spectrum of resources can be used. In contrast, coexistence facilitated by neutral mechanisms is not expected to increase function. We studied coexistence in laboratory microcosms of the bactivorous ciliates Paramecium aurelia and Colpidium striatum to understand the relationship between function and coexistence mechanism. We quantified population and community-level function (biomass and oxygen consumption, competitive interactions, and resource partitioning. The two ciliates partitioned their bacterial resource along a size axis, with the larger ciliate consuming larger bacteria than the smaller ciliate. Despite this, there was no gain in function at the community level for either biomass or oxygen consumption, and competitive effects were symmetrical within and between species. Because other potential coexistence mechanisms can be ruled out, it is likely that inter-specific interference competition diminished the expected gain in function generated by resource partitioning, leading to a system that appeared competitively neutral even when structured by niche partitioning. We also analyzed several previous studies where two species of protists coexisted and found that the two-species communities showed a broad range of biomass levels relative to the single-species states.

  15. Invertebrate diversity classification using self-organizing map neural network: with some special topological functions

    Directory of Open Access Journals (Sweden)

    WenJun Zhang

    2014-06-01

    Full Text Available In present study we used self-organizing map (SOM neural network to conduct the non-supervisory clustering of invertebrate orders in rice field. Four topological functions, i.e., cossintopf, sincostopf, acossintopf, and expsintopf, established on the template in toolbox of Matlab, were used in SOM neural network learning. Results showed that clusters were different when using different topological functions because different topological functions will generate different spatial structure of neurons in neural network. We may chose these functions and results based on comparison with the practical situation.

  16. Quantum Statistical Mechanics, L-Series and Anabelian Geometry I: Partition Functions

    NARCIS (Netherlands)

    Marcolli, Matilde; Cornelissen, Gunther

    2014-01-01

    The zeta function of a number field can be interpreted as the partition function of an associated quantum statistical mechanical (QSM) system, built from abelian class field theory. We introduce a general notion of isomorphism of QSM-systems and prove that it preserves (extremal) KMS equilibrium

  17. The partition function of the Bures ensemble as the τ-function of BKP and DKP hierarchies: continuous and discrete

    Science.gov (United States)

    Hu, Xing-Biao; Li, Shi-Hao

    2017-07-01

    The relationship between matrix integrals and integrable systems was revealed more than 20 years ago. As is known, matrix integrals over a Gaussian ensemble used in random matrix theory could act as the τ-function of several hierarchies of integrable systems. In this article, we will show that the time-dependent partition function of the Bures ensemble, whose measure has many interesting geometric properties, could act as the τ-function of BKP and DKP hierarchies. In addition, if discrete time variables are introduced, then this partition function could act as the τ-function of discrete BKP and DKP hierarchies. In particular, there are some links between the partition function of the Bures ensemble and Toda-type equations.

  18. Exact Partition Function for the Random Walk of an Electrostatic Field

    Directory of Open Access Journals (Sweden)

    Gabriel González

    2017-01-01

    Full Text Available The partition function for the random walk of an electrostatic field produced by several static parallel infinite charged planes in which the charge distribution could be either ±σ is obtained. We find the electrostatic energy of the system and show that it can be analyzed through generalized Dyck paths. The relation between the electrostatic field and generalized Dyck paths allows us to sum overall possible electrostatic field configurations and is used for obtaining the partition function of the system. We illustrate our results with one example.

  19. From topological strings to minimal models

    International Nuclear Information System (INIS)

    Foda, Omar; Wu, Jian-Feng

    2015-01-01

    We glue four refined topological vertices to obtain the building block of 5D U(2) quiver instanton partition functions. We take the 4D limit of the result to obtain the building block of 4D instanton partition functions which, using the AGT correspondence, are identified with Virasoro conformal blocks. We show that there is a choice of the parameters of the topological vertices that we start with, as well as the parameters and the intermediate states involved in the gluing procedure, such that we obtain Virasoro minimal model conformal blocks.

  20. From topological strings to minimal models

    Energy Technology Data Exchange (ETDEWEB)

    Foda, Omar [School of Mathematics and Statistics, University of Melbourne,Royal Parade, Parkville, VIC 3010 (Australia); Wu, Jian-Feng [Department of Mathematics and Statistics, Henan University,Minglun Street, Kaifeng city, Henan (China); Beijing Institute of Theoretical Physics and Mathematics,3rd Shangdi Street, Beijing (China)

    2015-07-24

    We glue four refined topological vertices to obtain the building block of 5D U(2) quiver instanton partition functions. We take the 4D limit of the result to obtain the building block of 4D instanton partition functions which, using the AGT correspondence, are identified with Virasoro conformal blocks. We show that there is a choice of the parameters of the topological vertices that we start with, as well as the parameters and the intermediate states involved in the gluing procedure, such that we obtain Virasoro minimal model conformal blocks.

  1. Partitioned log-rank tests for the overall homogeneity of hazard rate functions.

    Science.gov (United States)

    Liu, Yukun; Yin, Guosheng

    2017-07-01

    In survival analysis, it is routine to test equality of two survival curves, which is often conducted by using the log-rank test. Although it is optimal under the proportional hazards assumption, the log-rank test is known to have little power when the survival or hazard functions cross. To test the overall homogeneity of hazard rate functions, we propose a group of partitioned log-rank tests. By partitioning the time axis and taking the supremum of the sum of two partitioned log-rank statistics over different partitioning points, the proposed test gains enormous power for cases with crossing hazards. On the other hand, when the hazards are indeed proportional, our test still maintains high power close to that of the optimal log-rank test. Extensive simulation studies are conducted to compare the proposed test with existing methods, and three real data examples are used to illustrate the commonality of crossing hazards and the advantages of the partitioned log-rank tests.

  2. Partitioning heritability by functional category using GWAS summary statistics

    DEFF Research Database (Denmark)

    Finucane, Hilary K.; Bulik-Sullivan, Brendan; Gusev, Alexander

    2015-01-01

    Recent work has demonstrated that some functional categories of the genome contribute disproportionately to the heritability of complex diseases. Here we analyze a broad set of functional elements, including cell type-specific elements, to estimate their polygenic contributions to heritability in...... type-specific enrichments, including significant enrichment of central nervous system cell types in the heritability of body mass index, age at menarche, educational attainment and smoking behavior.......Recent work has demonstrated that some functional categories of the genome contribute disproportionately to the heritability of complex diseases. Here we analyze a broad set of functional elements, including cell type-specific elements, to estimate their polygenic contributions to heritability...

  3. Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation.

    Directory of Open Access Journals (Sweden)

    Sebastián Duchêne

    Full Text Available The availability of mitochondrial genome sequences is growing as a result of recent technological advances in molecular biology. In phylogenetic analyses, the complete mitogenome is increasingly becoming the marker of choice, usually providing better phylogenetic resolution and precision relative to traditional markers such as cytochrome b (CYTB and the control region (CR. In some cases, the differences in phylogenetic estimates between mitogenomic and single-gene markers have yielded incongruent conclusions. By comparing phylogenetic estimates made from different genes, we identified the most informative mitochondrial regions and evaluated the minimum amount of data necessary to reproduce the same results as the mitogenome. We compared results among individual genes and the mitogenome for recently published complete mitogenome datasets of selected delphinids (Delphinidae and killer whales (genus Orcinus. Using Bayesian phylogenetic methods, we investigated differences in estimation of topologies, divergence dates, and clock-like behavior among genes for both datasets. Although the most informative regions were not the same for each taxonomic group (COX1, CYTB, ND3 and ATP6 for Orcinus, and ND1, COX1 and ND4 for Delphinidae, in both cases they were equivalent to less than a quarter of the complete mitogenome. This suggests that gene information content can vary among groups, but can be adequately represented by a portion of the complete sequence. Although our results indicate that complete mitogenomes provide the highest phylogenetic resolution and most precise date estimates, a minimum amount of data can be selected using our approach when the complete sequence is unavailable. Studies based on single genes can benefit from the addition of a few more mitochondrial markers, producing topologies and date estimates similar to those obtained using the entire mitogenome.

  4. On the construction of Wannier functions in topological insulators

    DEFF Research Database (Denmark)

    Cornean, Decebal Horia; Monaco, Domenico

    2017-01-01

    We investigate the possibility of constructing exponentially localized composite Wannier bases, or equivalently smooth periodic Bloch frames, for three-dimensional time-reversal symmetric topological insulators, both of bosonic and of fermionic type, so that the bases in question are also...

  5. Topological estimation of aerodynamic controlled airplane system functionality of quality

    Directory of Open Access Journals (Sweden)

    С.В. Павлова

    2005-01-01

    Full Text Available  It is suggested to use topological methods for stage estimation of aerodynamic airplane control in widespread range of its conditions The estimation is based on normalized stage virtual non-isotropy of configurational airplane systems calculation.

  6. Topological and functional properties of the small GTPases protein interaction network.

    Directory of Open Access Journals (Sweden)

    Anna Delprato

    Full Text Available Small GTP binding proteins of the Ras superfamily (Ras, Rho, Rab, Arf, and Ran regulate key cellular processes such as signal transduction, cell proliferation, cell motility, and vesicle transport. A great deal of experimental evidence supports the existence of signaling cascades and feedback loops within and among the small GTPase subfamilies suggesting that these proteins function in a coordinated and cooperative manner. The interplay occurs largely through association with bi-partite regulatory and effector proteins but can also occur through the active form of the small GTPases themselves. In order to understand the connectivity of the small GTPases signaling routes, a systems-level approach that analyzes data describing direct and indirect interactions was used to construct the small GTPases protein interaction network. The data were curated from the Search Tool for the Retrieval of Interacting Genes (STRING database and include only experimentally validated interactions. The network method enables the conceptualization of the overall structure as well as the underlying organization of the protein-protein interactions. The interaction network described here is comprised of 778 nodes and 1943 edges and has a scale-free topology. Rac1, Cdc42, RhoA, and HRas are identified as the hubs. Ten sub-network motifs are also identified in this study with themes in apoptosis, cell growth/proliferation, vesicle traffic, cell adhesion/junction dynamics, the nicotinamide adenine dinucleotide phosphate (NADPH oxidase response, transcription regulation, receptor-mediated endocytosis, gene silencing, and growth factor signaling. Bottleneck proteins that bridge signaling paths and proteins that overlap in multiple small GTPase networks are described along with the functional annotation of all proteins in the network.

  7. How Incorrect Is the Classical Partition Function for the Ideal Gas?

    Science.gov (United States)

    Kroemer, Herbert

    1980-01-01

    Discussed is the classical partition function for the ideal gas and how it differs from the exact value for bosons or fermions in the classical regime. The differences in the two values are negligible hence the classical treatment leads in the end to correct answers for all observables. (Author/DS)

  8. On the definition of the partition function in quantum Regge calculus

    International Nuclear Information System (INIS)

    Nishimura, Jun

    1995-01-01

    We argue that the definition of the partition function used recently to demonstrate the failure of Regge calculus is wrong. In fact, in the one-dimensional case, we show that there is a more natural definition, with which one can reproduce the correct results. (author)

  9. Note on Nahm's partition function of the dual spectrum II

    CERN Document Server

    Minimi, M

    1977-01-01

    For pt.I see CERN publication TH2240. In part I, in considering the Nahm dual resonance mass spectra theory, it was noticed that there is another modular form; a generating function that transforms automorphically under T:w to -1/w and would realize the Veneziano dualism. The group structure associated with this form is studied since it appears, to the authors, to be more natural than Nahm's original. (6 refs).

  10. Use of JANAF Tables in Equilibrium Calculations and Partition Function Calculations for an Undergraduate Physical Chemistry Course

    Science.gov (United States)

    Cleary, David A.

    2014-01-01

    The usefulness of the JANAF tables is demonstrated with specific equilibrium calculations. An emphasis is placed on the nature of standard chemical potential calculations. Also, the use of the JANAF tables for calculating partition functions is examined. In the partition function calculations, the importance of the zero of energy is highlighted.

  11. Scale-space measures for graph topology link protein network architecture to function.

    Science.gov (United States)

    Hulsman, Marc; Dimitrakopoulos, Christos; de Ridder, Jeroen

    2014-06-15

    The network architecture of physical protein interactions is an important determinant for the molecular functions that are carried out within each cell. To study this relation, the network architecture can be characterized by graph topological characteristics such as shortest paths and network hubs. These characteristics have an important shortcoming: they do not take into account that interactions occur across different scales. This is important because some cellular functions may involve a single direct protein interaction (small scale), whereas others require more and/or indirect interactions, such as protein complexes (medium scale) and interactions between large modules of proteins (large scale). In this work, we derive generalized scale-aware versions of known graph topological measures based on diffusion kernels. We apply these to characterize the topology of networks across all scales simultaneously, generating a so-called graph topological scale-space. The comprehensive physical interaction network in yeast is used to show that scale-space based measures consistently give superior performance when distinguishing protein functional categories and three major types of functional interactions-genetic interaction, co-expression and perturbation interactions. Moreover, we demonstrate that graph topological scale spaces capture biologically meaningful features that provide new insights into the link between function and protein network architecture. Matlab(TM) code to calculate the scale-aware topological measures (STMs) is available at http://bioinformatics.tudelft.nl/TSSA © The Author 2014. Published by Oxford University Press.

  12. Generalized finite polynomial approximation (WINIMAX) to the reduced partition function of isotopic molecules

    International Nuclear Information System (INIS)

    Lee, M.W.; Bigeleisen, J.

    1978-01-01

    The MINIMAX finite polynomial approximation to an arbitrary function has been generalized to include a weighting function (WINIMAX). It is suggested that an exponential is a reasonable weighting function for the logarithm of the reduced partition function of a harmonic oscillator. Comparison of the error function for finite orthogonal polynomial (FOP), MINIMAX, and WINIMAX expansions of the logarithm of the reduced vibrational partition function show WINIMAX to be the best of the three approximations. A condensed table of WINIMAX coefficients is presented. The FOP, MINIMAX, and WINIMAX approximations are compared with exact calculations of the logarithm of the reduced partition function ratios for isotopic substitution in H 2 O, CH 4 , CH 2 O, C 2 H 4 , and C 2 H 6 at 300 0 K. Both deuterium and heavy atom isotope substitution are studied. Except for a third order expansion involving deuterium substitution, the WINIMAX method is superior to FOP and MINIMAX. At the level of a second order expansion WINIMAX approximations to ln(s/s')f are good to 2.5% and 6.5% for deuterium and heavy atom substitution, respectively

  13. Topology in SU(2) lattice gauge theory and parallelization of functional magnetic resonance imaging

    Energy Technology Data Exchange (ETDEWEB)

    Solbrig, Stefan

    2008-07-01

    In this thesis, I discuss topological properties of quenched SU(2) lattice gauge fields. In particular, clusters of topological charge density exhibit a power-law. The exponent of that power-law can be used to validate models for lattice gauge fields. Instead of working with fixed cutoffs of the topological charge density, using the notion of a ''watermark'' is more convenient. Furthermore, I discuss how a parallel computer, originally designed for lattice gauge field simulations, can be used for functional magnetic resonance imaging. Multi parameter fits can be parallelized to achieve almost real-time evaluation of fMRI data. (orig.)

  14. Topology in SU(2) lattice gauge theory and parallelization of functional magnetic resonance imaging

    International Nuclear Information System (INIS)

    Solbrig, Stefan

    2008-01-01

    In this thesis, I discuss topological properties of quenched SU(2) lattice gauge fields. In particular, clusters of topological charge density exhibit a power-law. The exponent of that power-law can be used to validate models for lattice gauge fields. Instead of working with fixed cutoffs of the topological charge density, using the notion of a ''watermark'' is more convenient. Furthermore, I discuss how a parallel computer, originally designed for lattice gauge field simulations, can be used for functional magnetic resonance imaging. Multi parameter fits can be parallelized to achieve almost real-time evaluation of fMRI data. (orig.)

  15. Algebraic Topology of Multi-Brain Connectivity Networks Reveals Dissimilarity in Functional Patterns during Spoken Communications.

    Directory of Open Access Journals (Sweden)

    Bosiljka Tadić

    Full Text Available Human behaviour in various circumstances mirrors the corresponding brain connectivity patterns, which are suitably represented by functional brain networks. While the objective analysis of these networks by graph theory tools deepened our understanding of brain functions, the multi-brain structures and connections underlying human social behaviour remain largely unexplored. In this study, we analyse the aggregate graph that maps coordination of EEG signals previously recorded during spoken communications in two groups of six listeners and two speakers. Applying an innovative approach based on the algebraic topology of graphs, we analyse higher-order topological complexes consisting of mutually interwoven cliques of a high order to which the identified functional connections organise. Our results reveal that the topological quantifiers provide new suitable measures for differences in the brain activity patterns and inter-brain synchronisation between speakers and listeners. Moreover, the higher topological complexity correlates with the listener's concentration to the story, confirmed by self-rating, and closeness to the speaker's brain activity pattern, which is measured by network-to-network distance. The connectivity structures of the frontal and parietal lobe consistently constitute distinct clusters, which extend across the listener's group. Formally, the topology quantifiers of the multi-brain communities exceed the sum of those of the participating individuals and also reflect the listener's rated attributes of the speaker and the narrated subject. In the broader context, the presented study exposes the relevance of higher topological structures (besides standard graph measures for characterising functional brain networks under different stimuli.

  16. Algorithm for finding partitionings of hard variants of boolean satisfiability problem with application to inversion of some cryptographic functions.

    Science.gov (United States)

    Semenov, Alexander; Zaikin, Oleg

    2016-01-01

    In this paper we propose an approach for constructing partitionings of hard variants of the Boolean satisfiability problem (SAT). Such partitionings can be used for solving corresponding SAT instances in parallel. For the same SAT instance one can construct different partitionings, each of them is a set of simplified versions of the original SAT instance. The effectiveness of an arbitrary partitioning is determined by the total time of solving of all SAT instances from it. We suggest the approach, based on the Monte Carlo method, for estimating time of processing of an arbitrary partitioning. With each partitioning we associate a point in the special finite search space. The estimation of effectiveness of the particular partitioning is the value of predictive function in the corresponding point of this space. The problem of search for an effective partitioning can be formulated as a problem of optimization of the predictive function. We use metaheuristic algorithms (simulated annealing and tabu search) to move from point to point in the search space. In our computational experiments we found partitionings for SAT instances encoding problems of inversion of some cryptographic functions. Several of these SAT instances with realistic predicted solving time were successfully solved on a computing cluster and in the volunteer computing project SAT@home. The solving time agrees well with estimations obtained by the proposed method.

  17. Missing Mass Approximations for the Partition Function of Stimulus Driven Ising Models

    Directory of Open Access Journals (Sweden)

    Robert eHaslinger

    2013-07-01

    Full Text Available Ising models are routinely used to quantify the second order, functional structure of neural populations. With some recent exceptions, they generally do not include the influence of time varying stimulus drive. Yet if the dynamics of network function are to be understood, time varying stimuli must be taken into account. Inclusion of stimulus drive carries a heavy computational burden because the partition function becomes stimulus dependent and must be separately calculated for all unique stimuli observed. This potentially increases computation time by the length of the data set. Here we present an extremely fast, yet simply implemented, method for approximating the stimulus dependent partition function in minutes or seconds. Noting that the most probable spike patterns (which are few occur in the training data, we sum partition function terms corresponding to those patterns explicitly. We then approximate the sum over the remaining patterns (which are improbable, but many by casting it in terms of the stimulus modulated missing mass (total stimulus dependent probability of all patterns not observed in the training data. We use use a product of conditioned logistic regression models to approximate the stimulus modulated missing mass. This method has complexity of roughly O(LNN_{pat} where is L the data length, N the number of neurons and N_{pat} the number of unique patterns in the data, contrasting with the O(L2^N complexity of alternate methods. Using multiple unit recordings from rat hippocampus, macaque DLPFC and cat Area 18 we demonstrate our method requires orders of magnitude less computation time than Monte Carlo methods and can approximate the stimulus driven partition function more accurately than either Monte Carlo methods or deterministic approximations. This advance allows stimuli to be easily included in Ising models making them suitable for studying population based stimulus encoding.

  18. Non-equilibrium statistical mechanics: partition functions and steepest entropy increase

    International Nuclear Information System (INIS)

    Bordel, Sergio

    2011-01-01

    On the basis of just the microscopic definition of thermodynamic entropy and the definition of the rate of entropy increase as the sum of products of thermodynamic fluxes and their conjugated forces, we have derived a general expression for non-equilibrium partition functions, which has the same form as the partition function previously obtained by other authors using different assumptions. Secondly we show that Onsager's reciprocity relations are equivalent to the assumption of steepest entropy ascent, independently of the choice of metric for the space of probability distributions. Finally we show that the Fisher–Rao metric for the space of probability distributions is the only one that guarantees that dissipative systems are what we call constantly describable (describable in terms of the same set of macroscopic observables during their entire trajectory of evolution towards equilibrium). The Fisher–Rao metric is fundamental to Beretta's dissipative quantum mechanics; therefore our last result provides a further justification for Beretta's theory

  19. Partition function as a Laplace transform of a positive measure in the strength parameter

    International Nuclear Information System (INIS)

    Bessis, D.

    1980-01-01

    We shall consider the partition function Z(lambda), of an N-body system whose Hamiltonian reads: H = H/sub O/ + lambdaH/sub I/. H/sub O/ is an exactly solvable Hamiltonian, one for which, for example all thermodynamical quantities can be calculated. H/sub I/ is the perturbation. We are interested in the analytic properties in the strength parameter lambda of the partition function Z(lambda) = Tr e/sup -ν[H 0 + lambdaH/sub I/]/ where for convenience the volume V and inverse temperature ν dependence has been suppressed on the left hand side. The representation for Z(lambda) is given and discussed, and applications are described

  20. Partition functions with spin in AdS2 via quasinormal mode methods

    International Nuclear Information System (INIS)

    Keeler, Cynthia; Lisbão, Pedro; Ng, Gim Seng

    2016-01-01

    We extend the results of http://dx.doi.org/10.1007/JHEP06(2014)099, computing one loop partition functions for massive fields with spin half in AdS 2 using the quasinormal mode method proposed by Denef, Hartnoll, and Sachdev http://dx.doi.org/10.1088/0264-9381/27/12/125001. We find the finite representations of SO(2,1) for spin zero and spin half, consisting of a highest weight state |h〉 and descendants with non-unitary values of h. These finite representations capture the poles and zeroes of the one loop determinants. Together with the asymptotic behavior of the partition functions (which can be easily computed using a large mass heat kernel expansion), these are sufficient to determine the full answer for the one loop determinants. We also discuss extensions to higher dimensional AdS 2n and higher spins.

  1. On Compliance and Buckling Objective Functions in Topology Optimization of Snap-Through Problems

    DEFF Research Database (Denmark)

    Lindgaard, Esben; Dahl, Jonas

    2013-01-01

    This paper deals with topology optimization of static geometrically nonlinear structures experiencing snap-through behaviour. Different compliance and buckling criterion functions are studied and applied for topology optimization of a point loaded curved beam problem with the aim of maximizing...... the snap-through buckling load. The response of the optimized structures obtained using the considered objective functions are evaluated and compared. Due to the intrinsic nonlinear nature of the problem, the load level at which the objective function is evaluated has a tremendous effect on the resulting...... optimized design. A well-known issue in buckling topology optimization is artificial buckling modes in low density regions. The typical remedy applied for linear buckling does not have a natural extension to nonlinear problems, and we propose an alternative approach. Some possible negative implications...

  2. The Perspective on Data and Control Flow Analysis in Topological Functioning Models by Petri Nets

    Directory of Open Access Journals (Sweden)

    Asnina Erika

    2014-12-01

    Full Text Available The perspective on integration of two mathematical formalisms, i.e., Colored Petri Nets (CPNs and Topological Functioning Model (TFM, is discussed in the paper. The roots of CPNs are in modeling system functionality. The TFM joins principles of system theory and algebraic topology, and formally bridges the solution domain with the problem domain. It is a base for further automated construction of software design models. The paper discusses a perspective on check of control and data flows in the TFM by CPNs formalism. The research result is definition of mappings from TFMs to CPNs.

  3. Comparing Transformation Possibilities of Topological Functioning Model and BPMN in the Context of Model Driven Architecture

    Directory of Open Access Journals (Sweden)

    Solomencevs Artūrs

    2016-05-01

    Full Text Available The approach called “Topological Functioning Model for Software Engineering” (TFM4SE applies the Topological Functioning Model (TFM for modelling the business system in the context of Model Driven Architecture. TFM is a mathematically formal computation independent model (CIM. TFM4SE is compared to an approach that uses BPMN as a CIM. The comparison focuses on CIM modelling and on transformation to UML Sequence diagram on the platform independent (PIM level. The results show the advantages and drawbacks the formalism of TFM brings into the development.

  4. Partition functions of classical Heisenberg spin chains with arbitrary and different exchange

    International Nuclear Information System (INIS)

    Cregg, P J; GarcIa-Palacios, J L; Svedlindh, P

    2008-01-01

    The classical Heisenberg model has been effective in modelling exchange interactions in molecular magnets. In this model, the partition function is important as it allows the calculation of the magnetization and susceptibility. For an ensemble of N-spin sites, this typically involves integrals in 2N dimensions. Here, for two-, three- and four-spin nearest neighbour open linear Heisenberg chains these integrals are reduced to sums of known functions, using a result due to Gegenbauer. For the case of the three- and four-spin chains, the sums are equivalent in form to the results of Joyce. The general result for an N-spin chain is also obtained

  5. A comparison model between density functional and wave function theories by means of the Löwdin partitioning technique.

    Science.gov (United States)

    Caballero, Marc; Moreira, Ibério de P R; Bofill, Josep Maria

    2013-05-07

    A comparison model is proposed based on the Löwdin partitioning technique to analyze the differences in the treatment of electron correlation by the wave function and density functional models. This comparison model provides a tool to understand the inherent structure of both theories and its discrepancies in terms of the subjacent mathematical structure and the necessary conditions for variationality required for the energy functional. Some numerical results on simple molecules are also reported revealing the known phenomenon of "overcorrelation" of density functional theory methods.

  6. Positron Emission Tomography Reveals Abnormal Topological Organization in Functional Brain Network in Diabetic Patients

    Directory of Open Access Journals (Sweden)

    Qiu eXiangzhe

    2016-05-01

    Full Text Available Recent studies have demonstrated alterations in the topological organization of structural brain networks in diabetes mellitus (DM. However, the DM-related changes in the topological properties in functional brain networks are almost unexplored so far. We therefore used fluoro-D-glucose positron emission tomography (FDG-PET data to construct functional brain networks of 73 DM patients and 91 sex- and age-matched normal controls (NCs, followed by a graph theoretical analysis. We found that both DM patients and NCs had a small-world topology in functional brain network. In comparison to the NC group, the DM group was found to have significantly lower small-world index, lower normalized clustering coefficients and higher normalized shortest path length. Moreover, for diabetic patients, the nodal centrality was significantly reduced in the right rectus, the right cuneus, the left middle occipital gyrus, and the left postcentral gyrus, and it was significantly increased in the orbitofrontal region of the left middle frontal gyrus, the left olfactory region, and the right paracentral lobule. Our results demonstrated that the diabetic brain was associated with disrupted topological organization in the functional PET network, thus providing the functional evidence for the abnormalities of brain networks in DM.

  7. Addressing Head Motion Dependencies for Small-World Topologies in Functional Connectomics

    Directory of Open Access Journals (Sweden)

    Chao-Gan eYan

    2013-12-01

    Full Text Available Graph theoretical explorations of functional interactions within the human connectome, are rapidly advancing our understanding of brain architecture. In particular, global and regional topological parameters are increasingly being employed to quantify and characterize inter-individual differences in human brain function. Head motion remains a significant concern in the accurate determination of resting-state fMRI based assessments of the connectome, including those based on graph theoretical analysis (e.g., motion can increase local efficiency, while decreasing global efficiency and small-worldness. This study provides a comprehensive examination of motion correction strategies on the relationship between motion and commonly used topological parameters. At the individual-level, we evaluated different models of head motion regression and scrubbing, as well as the potential benefits of using partial correlation (estimated via graphical lasso instead of full correlation. At the group-level, we investigated the utility of regression of motion and mean intrinsic functional connectivity before topological parameters calculation and/or after. Consistent with prior findings, none of the explicit motion-correction approaches at individual-level were able to remove motion relationships for topological parameters. Global signal regression (GSR emerged as an effective means of mitigating relationships between motion and topological parameters; though at the risk of altering the connectivity structure and topological hub distributions when higher densities graphs are employed (e.g., > 6%. Group-level analysis correction for motion was once again found to be a crucial step. Finally, similar to recent work, we found a constellation of findings suggestive of the possibility that some of the motion-relationships detected may reflect neural or trait signatures of motion, rather than simply motion-induced artifact.

  8. On s*g-continuous Functions on Topological Spaces

    Science.gov (United States)

    Khan, M.; Hussain, Murad

    2010-11-01

    The aim of this paper is to introduce and study the concept of s*g-continuous and s*g-closed functions. We investigate their relation with already existing notions. We also introduce s*g-irresolute function and investigate its relation with s*g-continuous function. When the s*g-closed sets are preserved, is also studied. In the end, we define and study the notions of s*g-compactness and s*g-connectedness.

  9. Scale-space measures for graph topology link protein network architecture to function

    NARCIS (Netherlands)

    Hulsman, M.; Dimitrakopoulos, C.; De Ridder, J.

    2014-01-01

    MOTIVATION: The network architecture of physical protein interactions is an important determinant for the molecular functions that are carried out within each cell. To study this relation, the network architecture can be characterized by graph topological characteristics such as shortest paths and

  10. Calculation of equilibrium stable isotope partition function ratios for aqueous zinc complexes and metallic zinc

    Science.gov (United States)

    Black, Jay R.; Kavner, Abby; Schauble, Edwin A.

    2011-02-01

    The goal of this study is to determine reduced partition function ratios for a variety of species of zinc, both as a metal and in aqueous solutions in order to calculate equilibrium stable isotope partitioning. We present calculations of the magnitude of Zn stable-isotope fractionation ( 66,67,68Zn/ 64Zn) between aqueous species and metallic zinc using measured vibrational spectra (fit from neutron scattering studies of metallic zinc) and a variety of electronic structure models. The results show that the reduced metal, Zn(0), will be light in equilibrium with oxidized Zn(II) aqueous species, with the best estimates for the Zn(II)-Zn(0) fractionation between hexaquo species and metallic zinc being Δ 66/64Zn aq-metal ˜ 1.6‰ at 25 °C, and Δ 66/64Zn aq-metal ˜ 0.8‰ between the tetrachloro zinc complex and metallic zinc at 25 °C using B3LYP/aug-cc-pVDZ level of theory and basis set. To examine the behavior of zinc in various aqueous solution chemistries, models for Zn(II) complex speciation were used to determine which species are thermodynamically favorable and abundant under a variety of different conditions relevant to natural waters, experimental and industrial solutions. The optimal molecular geometries for [Zn(H 2O) 6] 2+, [Zn(H 2O) 6]·SO 4, [ZnCl 4] 2- and [Zn(H 2O) 3(C 3H 5O(COO) 3)] - complexes in various states of solvation, protonation and coordination were calculated at various levels of electronic structure theory and basis set size. Isotopic reduced partition function ratios were calculated from frequency analyses of these optimized structures. Increasing the basis set size typically led to a decrease in the calculated reduced partition function ratios of ˜0.5‰ with values approaching a plateau using the aug-cc-pVDZ basis set or larger. The widest range of species were studied at the B3LYP/LAN2DZ/6-31G ∗ level of theory and basis-set size for comparison. Aqueous zinc complexes where oxygen is bound to the metal center tended to have the

  11. Genus two partition functions and Rényi entropies of large c conformal field theories

    Science.gov (United States)

    Belin, Alexandre; Keller, Christoph A.; Zadeh, Ida G.

    2017-10-01

    We compute genus two partition functions in two-dimensional conformal field theories at large central charge, focusing on surfaces that give the third Rényi entropy of two intervals. We compute this for generalized free theories and for symmetric orbifolds, and compare it to the result in pure gravity. We find a new phase transition if the theory contains a light operator of dimension Δ ≤slant 0.19 . This means in particular that unlike the second Rényi entropy, the third one is no longer universal.

  12. Calculation of partition functions and free energies of a binary mixture using the energy partitioning method: application to carbon dioxide and methane.

    Science.gov (United States)

    Do, Hainam; Hirst, Jonathan D; Wheatley, Richard J

    2012-04-19

    It is challenging to compute the partition function (Q) for systems with enormous configurational spaces, such as fluids. Recently, we developed a Monte Carlo technique (an energy partitioning method) for computing Q [ J. Chem. Phys. 2011 , 135 , 174105 ]. In this paper, we use this approach to compute the partition function of a binary fluid mixture (carbon dioxide + methane); this allows us to obtain the Helmholtz free energy (F) via F = -k(B)T ln Q and the Gibbs free energy (G) via G = F + pV. We then utilize G to obtain the coexisting mole fraction curves. The chemical potential of each species is also obtained. At the vapor-liquid equilibrium condition, the chemical potential of methane significantly increases, while that of carbon dioxide slightly decreases, as the pressure increases along an isotherm. Since Q is obtained from the density of states, which is independent of the temperature, equilibrium thermodynamic properties at any condition can be obtained by varying the total composition and volume of the system. Our methodology can be adapted to explore the free energies of other binary mixtures in general and of those containing CO(2) in particular. Since the method gives access to the free energy and chemical potentials, it will be useful in many other applications.

  13. Off-critical local height probabilities on a plane and critical partition functions on a cylinder

    Directory of Open Access Journals (Sweden)

    Omar Foda

    2018-03-01

    Full Text Available We compute off-critical local height probabilities in regime-III restricted solid-on-solid models in a 4N-quadrant spiral geometry, with periodic boundary conditions in the angular direction, and fixed boundary conditions in the radial direction, as a function of N, the winding number of the spiral, and τ, the departure from criticality of the model, and observe that the result depends only on the product Nτ. In the limit N→1, τ→τ0, such that τ0 is finite, we recover the off-critical local height probability on a plane, τ0-away from criticality. In the limit N→∞, τ→0, such that Nτ=τ0 is finite, and following a conformal transformation, we obtain a critical partition function on a cylinder of aspect-ratio τ0. We conclude that the off-critical local height probability on a plane, τ0-away from criticality, is equal to a critical partition function on a cylinder of aspect-ratio τ0, in agreement with a result of Saleur and Bauer.

  14. Exact Partition Functions of Interacting Self-Avoiding Walks on Lattices

    Science.gov (United States)

    Hsieh, Yu-Hsin; Chen, Chi-Ning; Hu, Chin-Kun

    2016-02-01

    Ideas and methods of statistical physics have been shown to be useful for understanding some interesting problems in physical systems, e.g. universality and scaling in critical systems. The interacting self-avoiding walk (ISAW) on a lattice is the simplest model for homopolymers and serves as the framework of simple models for biopolymers, such as DNA, RNA, and protein, which are important components in complex systems in biology. In this paper, we briefly review our recent work on exact partition functions of ISAW. Based on zeros of these exact partition functions, we have developed a novel method in which both loci of zeros and thermodynamic functions associated with them are considered. With this method, the first zeros can be identified clearly without ambiguity. The critical point of a small system can then be defined as the peak position of the heat capacity component associated with the first zeros. For the system with two phase transitions, two pairs of first zeros corresponding to two phase transitions can be identified and overlapping Cυ can be well separated. ISAW on the simple cubic lattice is such a system where in addition to a standard collapse transition, there is another freezing transition occurring at a lower temperature. Our approach can give a clear scenario for the collapse and the freezing transitions.

  15. Exact Partition Functions of Interacting Self-Avoiding Walks on Lattices

    Directory of Open Access Journals (Sweden)

    Hsieh Yu-Hsin

    2016-01-01

    Full Text Available Ideas and methods of statistical physics have been shown to be useful for understanding some interesting problems in physical systems, e.g. universality and scaling in critical systems. The interacting self-avoiding walk (ISAW on a lattice is the simplest model for homopolymers and serves as the framework of simple models for biopolymers, such as DNA, RNA, and protein, which are important components in complex systems in biology. In this paper, we briefly review our recent work on exact partition functions of ISAW. Based on zeros of these exact partition functions, we have developed a novel method in which both loci of zeros and thermodynamic functions associated with them are considered. With this method, the first zeros can be identified clearly without ambiguity. The critical point of a small system can then be defined as the peak position of the heat capacity component associated with the first zeros. For the system with two phase transitions, two pairs of first zeros corresponding to two phase transitions can be identified and overlapping Cυ can be well separated. ISAW on the simple cubic lattice is such a system where in addition to a standard collapse transition, there is another freezing transition occurring at a lower temperature. Our approach can give a clear scenario for the collapse and the freezing transitions.

  16. Asymptotic expansion of a partition function related to the sinh-model

    CERN Document Server

    Borot, Gaëtan; Kozlowski, Karol K

    2016-01-01

    This book elaborates on the asymptotic behaviour, when N is large, of certain N-dimensional integrals which typically occur in random matrices, or in 1+1 dimensional quantum integrable models solvable by the quantum separation of variables. The introduction presents the underpinning motivations for this problem, a historical overview, and a summary of the strategy, which is applicable in greater generality. The core aims at proving an expansion up to o(1) for the logarithm of the partition function of the sinh-model. This is achieved by a combination of potential theory and large deviation theory so as to grasp the leading asymptotics described by an equilibrium measure, the Riemann-Hilbert approach to truncated Wiener-Hopf in order to analyse the equilibrium measure, the Schwinger-Dyson equations and the boostrap method to finally obtain an expansion of correlation functions and the one of the partition function. This book is addressed to researchers working in random matrices, statistical physics or integra...

  17. BPS/CFT Correspondence III: Gauge Origami Partition Function and qq-Characters

    Science.gov (United States)

    Nekrasov, Nikita

    2017-12-01

    We study generalized gauge theories engineered by taking the low energy limit of the Dp branes wrapping {X × {T}^{p-3}} , with X a possibly singular surface in a Calabi-Yau fourfold Z. For toric Z and X the partition function can be computed by localization, making it a statistical mechanical model, called the origami. The random variables are the ensembles of Young diagrams. The building block of the gauge origami is associated with a tetrahedron, whose edges are colored by vector spaces. We show the properly normalized partition function is an entire function of the Coulomb moduli, for generic values of the {Ω} -background parameters. The orbifold version of the theory defines the qq-character operators, with and without the surface defects. The analytic properties are the consequence of a relative compactness of the moduli spaces {M({ěc n}, k)} of crossed and spiked instantons, demonstrated in "BPS/CFT correspondence II: instantons at crossroads, moduli and compactness theorem".

  18. Stringy instanton counting and topological strings

    Energy Technology Data Exchange (ETDEWEB)

    Manabe, Masahide [Faculty of Physics, University of Warsaw,ul. Pasteura 5, 02-093 Warsaw (Poland)

    2015-07-20

    We study the stringy instanton partition function of four dimensional N=2U(N) supersymmetric gauge theory which was obtained by Bonelli et al. in 2013. In type IIB string theory on ℂ{sup 2}×T{sup ∗}ℙ{sup 1}×ℂ, the stringy U(N) instantons of charge k are described by k D1-branes wrapping around the ℙ{sup 1} bound to N D5-branes on ℂ{sup 2}×ℙ{sup 1}. The KK corrections induced by compactification of the ℙ{sup 1} give the stringy corrections. We find a relation between the stringy instanton partition function whose quantum stringy corrections have been removed and the K-theoretic instanton partition function, or by geometric engineering, the refined topological A-model partition function on a local toric Calabi-Yau threefold. We also study the quantum stringy corrections in the stringy instanton partition function which is not captured by the refined topological strings.

  19. The topological string associated with a simple singularity of type D

    International Nuclear Information System (INIS)

    Nakatsu, Toshio.

    1994-08-01

    The partition function of D N+1 topological string, the coupled system of topological gravity and D N+1 topological minimal matter, is proposed in the framework of KP hierarchy. It is specified by the elements of GL(∞) which constitute the deformed family from the A 2N-1 topological string. Its dispersionless limit is investigated from the view of both dispersionless KP hierarchy and singularity theory. In particular the free energy restricted on the small phase space coincides with that for the topological Landau-Ginzburg model of type D N+1 . (author)

  20. The S100 proteins in epidermis: Topology and function.

    Science.gov (United States)

    Leśniak, Wiesława; Graczyk-Jarzynka, Agnieszka

    2015-12-01

    S100 proteins are small calcium binding proteins encoded by genes located in the epidermal differentiation complex (EDC). Differently to other proteins encoded by EDC genes, which are indispensable for normal epidermal differentiation, the role of S100 proteins in the epidermis remains largely unknown. Particular S100 proteins differ in their distribution in epidermal layers, skin appendages, melanocytes and Langerhans cells. Taking into account that each epidermal component consists of specialized cells with well-defined functions, such differential distribution may be indicative of the function of a given S100 protein. We used this criterion together with the survey of the current experimental data pertinent to epidermis to provide a fairly comprehensive view on the possible function of individual S100 proteins in this tissue. S100 proteins are differently expressed and, despite extensive structural homology, perform diverse functions in the epidermis. Certain S100 proteins probably ensure constant epidermal renewal and support wound healing while others act in epidermal differentiation or have a protective role. As their expression is differently affected in various skin pathologies, particular S100 proteins could be valuable diagnostic markers. S100 proteins seem to be important although not yet fully recognized epidermal constituents. Better understanding of their role in the epidermis might be helpful in designing therapies to various skin diseases. Copyright © 2015 Elsevier B.V. All rights reserved.

  1. The topology of perceptive functions as a corollary of the theorem of existence in closed spaces.

    Science.gov (United States)

    Bounias, M; Bonaly, A

    1997-01-01

    The capability for a system of perceiving both outer objects and an inner self are two fundamental features of abstract mathematical objects endowed with the properties of topologically closed sets. Such structures exist upon intersection of topological spaces owning different dimensions. Then, the theorem of Jordan-Veblen provides their capability of being observable, while the theorems of Brouwer and of Banach-Caccioppoli provide two kinds of fixed points which account for the properties of so-called right and left brain functions. Fixed points account for the biological 'self', and the system provides theoretical justification for the existence of brain structure/function relationships, including memory, emotion, and respective characteristics of right and left hemispheres. Hence, an abstract topological reasoning based on set properties, provides evidence that the observer's function directly infers from the phenomenon of existence and that it belongs to the same mathematical system as the property of being observable. Order relations are raised from equivalence relations by Poincaré groups, upon mappings on the sets of functions and related homotopic transformations in sequences of intersections. Therefore, time is a construction of abstract brain functions, and a living organism just fills the system with appropriate molecular structures.

  2. Joint multifractal analysis based on the partition function approach: analytical analysis, numerical simulation and empirical application

    Science.gov (United States)

    Xie, Wen-Jie; Jiang, Zhi-Qiang; Gu, Gao-Feng; Xiong, Xiong; Zhou, Wei-Xing

    2015-10-01

    Many complex systems generate multifractal time series which are long-range cross-correlated. Numerous methods have been proposed to characterize the multifractal nature of these long-range cross correlations. However, several important issues about these methods are not well understood and most methods consider only one moment order. We study the joint multifractal analysis based on partition function with two moment orders, which was initially invented to investigate fluid fields, and derive analytically several important properties. We apply the method numerically to binomial measures with multifractal cross correlations and bivariate fractional Brownian motions without multifractal cross correlations. For binomial multifractal measures, the explicit expressions of mass function, singularity strength and multifractal spectrum of the cross correlations are derived, which agree excellently with the numerical results. We also apply the method to stock market indexes and unveil intriguing multifractality in the cross correlations of index volatilities.

  3. Application of calcite Mg partitioning functions to the reconstruction of paleocean Mg/Ca

    Science.gov (United States)

    Hasiuk, Franciszek J.; Lohmann, Kyger C.

    2010-12-01

    Calcite Mg/Ca is usually assumed to vary linearly with solution Mg/Ca, that a constant partition coefficient describes the relationship between these two ratios. Numerous published empirical datasets suggests that this relationship is better described by a power function. We provide a compilation of these literature data for biotic and abiotic calcite in the form of Calcite Mg/Ca = F(Solution Mg/Ca) H, where F and H are empirically determined fitting parameters describing the slope and deviation from linearity, respectively, of the function. This is equivalent to Freundlich sorption behavior controlling Mg incorporation in calcite. Using a power function, instead of a partition coefficient, lowers Phanerozoic seawater Mg/Ca estimates based on echinoderm skeletal material by, on average, 0.5 mol/mol from previous estimates. These functions can also be used to model the primary skeletal calcite Mg/Ca of numerous calcite phases through geologic time. Such modeling suggests that the Mg/Ca of all calcite precipitated from seawater has varied through the Phanerozoic in response to changing seawater Mg/Ca and that the overall range in Mg/Ca measured among various calcite phases would be greatest when seawater Mg/Ca was also high (e.g., "aragonite seas") and lowest when seawater Mg/Ca was low (e.g., "calcite seas"). It follows that, during times of "calcite seas" when the seawater Mg/Ca is presumed to have been lower, deposition of calcite with low Mg contents would have resulted in a depressed drive for diagenetic stabilization of shelfal carbonate and, in turn, lead to greater preservation of crystal and skeletal microfabrics and primary chemistries in biotic and abiotic calcites.

  4. Partition functions in even dimensional AdS via quasinormal mode methods

    International Nuclear Information System (INIS)

    Keeler, Cynthia; Ng, Gim Seng

    2014-01-01

    In this note, we calculate the one-loop determinant for a massive scalar (with conformal dimension Δ) in even-dimensional AdS d+1 space, using the quasinormal mode method developed in http://dx.doi.org/10.1088/0264-9381/27/12/125001 by Denef, Hartnoll, and Sachdev. Working first in two dimensions on the related Euclidean hyperbolic plane H 2 , we find a series of zero modes for negative real values of Δ whose presence indicates a series of poles in the one-loop partition function Z(Δ) in the Δ complex plane; these poles contribute temperature-independent terms to the thermal AdS partition function computed in http://dx.doi.org/10.1088/0264-9381/27/12/125001. Our results match those in a series of papers by Camporesi and Higuchi, as well as Gopakumar et al. http://dx.doi.org/10.1007/JHEP11(2011)010 and Banerjee et al. http://dx.doi.org/10.1007/JHEP03(2011)147. We additionally examine the meaning of these zero modes, finding that they Wick-rotate to quasinormal modes of the AdS 2 black hole. They are also interpretable as matrix elements of the discrete series representations of SO(2,1) in the space of smooth functions on S 1 . We generalize our results to general even dimensional AdS 2n , again finding a series of zero modes which are related to discrete series representations of SO(2n,1), the motion group of H 2n .

  5. Semi-precontinuous functions and properties of generalized semi-preclosed sets in topological spaces

    OpenAIRE

    Navalagi, G. B.

    2002-01-01

    Andrijević (1986) introduced the class of semi-preopen sets in topological spaces. Since then many authors including Andrijević have studied this class of sets by defining their neighborhoods, separation axioms and functions. The purpose of this paper is to provide the new characterizations of semi-preopen and semi-preclosed sets by defining the concepts of semi-precontinuous mappings, semi-preopen mappings, semi-preclosed mappings, semi-preirresolute mappings, pre-sem...

  6. Topological and quasi-topological field theories in two dimensions

    International Nuclear Information System (INIS)

    Cunha, Bruno G. Carneiro da; Teotonio-Sobrinho, Paulo

    1997-01-01

    We study a class of lattice field theories in two dimensions that include quantum Yang-Mills theory as a particular example. Given a two dimensional orientable surface of genus g, the partition function Ζ is defined for a triangulation with η is defined for a triangulation with η triangles of size ε only. We compute the portion function and show that the continuum limit is well defined if when ε -> 0 the model approaches a topological theory. we show that the universality classes of such models can be easily classified. (author)

  7. PolyUbiquitin chain linkage topology selects the functions from the underlying binding landscape.

    Directory of Open Access Journals (Sweden)

    Yong Wang

    2014-07-01

    Full Text Available Ubiquitin (Ub can generate versatile molecular signals and lead to different celluar fates. The functional poly-valence of Ub is believed to be resulted from its ability to form distinct polymerized chains with eight linkage types. To provide a full picture of ubiquitin code, we explore the binding landscape of two free Ub monomers and also the functional landscapes of of all eight linkage types by theoretical modeling. Remarkably, we found that most of the compact structures of covalently connected dimeric Ub chains (diUbs pre-exist on the binding landscape. These compact functional states were subsequently validated by corresponding linkage models. This leads to the proposal that the folding architecture of Ub monomer has encoded all functional states into its binding landscape, which is further selected by different topologies of polymeric Ub chains. Moreover, our results revealed that covalent linkage leads to symmetry breaking of interfacial interactions. We further propose that topological constraint not only limits the conformational space for effective switching between functional states, but also selects the local interactions for realizing the corresponding biological function. Therefore, the topological constraint provides a way for breaking the binding symmetry and reaching the functional specificity. The simulation results also provide several predictions that qualitatively and quantitatively consistent with experiments. Importantly, the K48 linkage model successfully predicted intermediate states. The resulting multi-state energy landscape was further employed to reconcile the seemingly contradictory experimental data on the conformational equilibrium of K48-diUb. Our results further suggest that hydrophobic interactions are dominant in the functional landscapes of K6-, K11-, K33- and K48 diUbs, while electrostatic interactions play a more important role in the functional landscapes of K27, K29, K63 and linear linkages.

  8. PolyUbiquitin chain linkage topology selects the functions from the underlying binding landscape.

    Science.gov (United States)

    Wang, Yong; Tang, Chun; Wang, Erkang; Wang, Jin

    2014-07-01

    Ubiquitin (Ub) can generate versatile molecular signals and lead to different celluar fates. The functional poly-valence of Ub is believed to be resulted from its ability to form distinct polymerized chains with eight linkage types. To provide a full picture of ubiquitin code, we explore the binding landscape of two free Ub monomers and also the functional landscapes of of all eight linkage types by theoretical modeling. Remarkably, we found that most of the compact structures of covalently connected dimeric Ub chains (diUbs) pre-exist on the binding landscape. These compact functional states were subsequently validated by corresponding linkage models. This leads to the proposal that the folding architecture of Ub monomer has encoded all functional states into its binding landscape, which is further selected by different topologies of polymeric Ub chains. Moreover, our results revealed that covalent linkage leads to symmetry breaking of interfacial interactions. We further propose that topological constraint not only limits the conformational space for effective switching between functional states, but also selects the local interactions for realizing the corresponding biological function. Therefore, the topological constraint provides a way for breaking the binding symmetry and reaching the functional specificity. The simulation results also provide several predictions that qualitatively and quantitatively consistent with experiments. Importantly, the K48 linkage model successfully predicted intermediate states. The resulting multi-state energy landscape was further employed to reconcile the seemingly contradictory experimental data on the conformational equilibrium of K48-diUb. Our results further suggest that hydrophobic interactions are dominant in the functional landscapes of K6-, K11-, K33- and K48 diUbs, while electrostatic interactions play a more important role in the functional landscapes of K27, K29, K63 and linear linkages.

  9. EEG functional network topology is associated with disability in patients with amyotrophic lateral sclerosis

    Science.gov (United States)

    Fraschini, Matteo; Demuru, Matteo; Hillebrand, Arjan; Cuccu, Lorenza; Porcu, Silvia; di Stefano, Francesca; Puligheddu, Monica; Floris, Gianluca; Borghero, Giuseppe; Marrosu, Francesco

    2016-12-01

    Amyotrophic Lateral Sclerosis (ALS) is one of the most severe neurodegenerative diseases, which is known to affect upper and lower motor neurons. In contrast to the classical tenet that ALS represents the outcome of extensive and progressive impairment of a fixed set of motor connections, recent neuroimaging findings suggest that the disease spreads along vast non-motor connections. Here, we hypothesised that functional network topology is perturbed in ALS, and that this reorganization is associated with disability. We tested this hypothesis in 21 patients affected by ALS at several stages of impairment using resting-state electroencephalography (EEG) and compared the results to 16 age-matched healthy controls. We estimated functional connectivity using the Phase Lag Index (PLI), and characterized the network topology using the minimum spanning tree (MST). We found a significant difference between groups in terms of MST dissimilarity and MST leaf fraction in the beta band. Moreover, some MST parameters (leaf, hierarchy and kappa) significantly correlated with disability. These findings suggest that the topology of resting-state functional networks in ALS is affected by the disease in relation to disability. EEG network analysis may be of help in monitoring and evaluating the clinical status of ALS patients.

  10. ABCD of Beta Ensembles and Topological Strings

    CERN Document Server

    Krefl, Daniel

    2012-01-01

    We study beta-ensembles with Bn, Cn, and Dn eigenvalue measure and their relation with refined topological strings. Our results generalize the familiar connections between local topological strings and matrix models leading to An measure, and illustrate that all those classical eigenvalue ensembles, and their topological string counterparts, are related one to another via various deformations and specializations, quantum shifts and discrete quotients. We review the solution of the Gaussian models via Macdonald identities, and interpret them as conifold theories. The interpolation between the various models is plainly apparent in this case. For general polynomial potential, we calculate the partition function in the multi-cut phase in a perturbative fashion, beyond tree-level in the large-N limit. The relation to refined topological string orientifolds on the corresponding local geometry is discussed along the way.

  11. A simple way of approximating the canonical partition functions in statistical mechanics

    International Nuclear Information System (INIS)

    Fernández, Francisco M

    2015-01-01

    We propose a simple pedagogical way of introducing the Euler–MacLaurin summation formula in an undergraduate course on statistical mechanics. The reason is that the students may feel more comfortable and confident if they are able to deduce the main equations. To this end we put forward two alternative routes: the first one is the simplest and yields the first two terms of the expansion. The second one is somewhat more elaborate and takes into account all the correction terms. We apply both to the calculation of the simplest one-particle canonical partition functions for the translational, vibrational and rotational degrees of freedom. The more elaborate, systematic calculation of the correction terms is suitable for motivating the students to explore the possibility of using available computer algebra software that enable one to avoid long and tedious manipulation of algebraic equations. (paper)

  12. The star-triangle relation, lens partition function, and hypergeometric sum/integrals

    Energy Technology Data Exchange (ETDEWEB)

    Gahramanov, Ilmar [Max Planck Institute for Gravitational Physics (Albert Einstein Institute),Am Mühlenberg 1, D-14476 Potsdam (Germany); Institute of Radiation Problems ANAS,B. Vahabzade 9, AZ1143 Baku (Azerbaijan); Department of Mathematics, Khazar University,Mehseti St. 41, AZ1096 Baku (Azerbaijan); Kels, Andrew P. [Institute of Physics, University of Tokyo,Komaba, Tokyo 153-8902 (Japan)

    2017-02-08

    The aim of the present paper is to consider the hyperbolic limit of an elliptic hypergeometric sum/integral identity, and associated lattice model of statistical mechanics previously obtained by the second author. The hyperbolic sum/integral identity obtained from this limit, has two important physical applications in the context of the so-called gauge/YBE correspondence. For statistical mechanics, this identity is equivalent to a new solution of the star-triangle relation form of the Yang-Baxter equation, that directly generalises the Faddeev-Volkov models to the case of discrete and continuous spin variables. On the gauge theory side, this identity represents the duality of lens (S{sub b}{sup 3}/ℤ{sub r}) partition functions, for certain three-dimensional N=2 supersymmetric gauge theories.

  13. Anharmonic Rovibrational Partition Functions for Fluxional Species at High Temperatures via Monte Carlo Phase Space Integrals

    Energy Technology Data Exchange (ETDEWEB)

    Jasper, Ahren W. [Chemical Sciences and Engineering; Gruey, Zackery B. [Chemical Sciences and Engineering; Harding, Lawrence B. [Chemical Sciences and Engineering; Georgievskii, Yuri [Chemical Sciences and Engineering; Klippenstein, Stephen J. [Chemical Sciences and Engineering; Wagner, Albert F. [Chemical Sciences and Engineering

    2018-02-03

    Monte Carlo phase space integration (MCPSI) is used to compute full dimensional and fully anharmonic, but classical, rovibrational partition functions for 22 small- and medium-sized molecules and radicals. Several of the species considered here feature multiple minima and low-frequency nonlocal motions, and efficiently sampling these systems is facilitated using curvilinear (stretch, bend, and torsion) coordinates. The curvilinear coordinate MCPSI method is demonstrated to be applicable to the treatment of fluxional species with complex rovibrational structures and as many as 21 fully coupled rovibrational degrees of freedom. Trends in the computed anharmonicity corrections are discussed. For many systems, rovibrational anharmonicities at elevated temperatures are shown to vary consistently with the number of degrees of freedom and with temperature once rovibrational coupling and torsional anharmonicity are accounted for. Larger corrections are found for systems with complex vibrational structures, such as systems with multiple large-amplitude modes and/or multiple minima.

  14. The star-triangle relation, lens partition function, and hypergeometric sum/integrals

    International Nuclear Information System (INIS)

    Gahramanov, Ilmar; Kels, Andrew P.

    2017-01-01

    The aim of the present paper is to consider the hyperbolic limit of an elliptic hypergeometric sum/integral identity, and associated lattice model of statistical mechanics previously obtained by the second author. The hyperbolic sum/integral identity obtained from this limit, has two important physical applications in the context of the so-called gauge/YBE correspondence. For statistical mechanics, this identity is equivalent to a new solution of the star-triangle relation form of the Yang-Baxter equation, that directly generalises the Faddeev-Volkov models to the case of discrete and continuous spin variables. On the gauge theory side, this identity represents the duality of lens (S b 3 /ℤ r ) partition functions, for certain three-dimensional N=2 supersymmetric gauge theories.

  15. Spin glass: thermal properties and characterization of the ± J Sherrington-Kirkpatrick model partition function zeros

    International Nuclear Information System (INIS)

    Faria, A.C. de.

    1990-01-01

    A detailed study of the S-K model through the analysis of the zeros of the partition function in the complex temperature plane is performed. By the exact way, the notable thermodynamical properties of the system to a variety of the length (N=5→25 spins) are calculated, using only standards concepts (without the use of tricks like that of replicas). Dilute models had been also considered. The principal result of this work is the characterization of the zeros of the partition function of the S-K model. (author)

  16. Lectures on 2d gauge theories. Topological aspects and path integral techniques

    International Nuclear Information System (INIS)

    Blau, M.; Thompson, G.

    1993-10-01

    In these lectures are discussed two classes of two-dimensional field theories which are not obviously topological, but which nevertheless exhibit an intriguing equivalence with certain topological theories. These classes are two-dimensional Yang-Mills theory and the so-called G/G gauged Wess-Zumino-Witten model. The aim is to exhibit and extract the topological information contained in these theories and to present a technique which allows to calculate directly their partition functions and topological correlation functions on arbitrary closed surfaces. 34 refs

  17. Three-dimensional low-energy topological invariants

    International Nuclear Information System (INIS)

    Bakalarska, M.; Broda, B.

    2000-01-01

    A description of the one-loop approximation formula for the partition function of a three-dimensional abelian version of the Donaldson-Witten theory is proposed. The one-loop expression is shown to contain such topological invariants of a three-dimensional manifold M like the Reidemeister-Ray-Singer torsion τ R and Betti numbers. (orig.)

  18. Transfer functions for solid solution partitioning of cadmium for Australian soils

    NARCIS (Netherlands)

    Vries, de W.; Mc Laughlin, M.J.; Groenenberg, J.E.

    2011-01-01

    To assess transport and ecotoxicological risks of metals, such as cadmium (Cd) in soils, models are needed for partitioning and speciation. We derived regression-based “partition-relations” based on adsorption and desorption experiments for main Australian soil types. First, batch adsorption

  19. Hierarchical partitioning of metazoan protein conservation profiles provides new functional insights.

    Directory of Open Access Journals (Sweden)

    Jonathan Witztum

    Full Text Available The availability of many complete, annotated proteomes enables the systematic study of the relationships between protein conservation and functionality. We explore this question based solely on the presence or absence of protein homologues (a.k.a. conservation profiles. We study 18 metazoans, from two distinct points of view: the human's and the fly's. Using the GOrilla gene ontology (GO analysis tool, we explore functional enrichment of the "universal proteins", those with homologues in all 17 other species, and of the "non-universal proteins". A large number of GO terms are strongly enriched in both human and fly universal proteins. Most of these functions are known to be essential. A smaller number of GO terms, exhibiting markedly different properties, are enriched in both human and fly non-universal proteins. We further explore the non-universal proteins, whose conservation profiles are consistent with the "tree of life" (TOL consistent, as well as the TOL inconsistent proteins. Finally, we applied Quantum Clustering to the conservation profiles of the TOL consistent proteins. Each cluster is strongly associated with one or a small number of specific monophyletic clades in the tree of life. The proteins in many of these clusters exhibit strong functional enrichment associated with the "life style" of the related clades. Most previous approaches for studying function and conservation are "bottom up", studying protein families one by one, and separately assessing the conservation of each. By way of contrast, our approach is "top down". We globally partition the set of all proteins hierarchically, as described above, and then identify protein families enriched within different subdivisions. While supporting previous findings, our approach also provides a tool for discovering novel relations between protein conservation profiles, functionality, and evolutionary history as represented by the tree of life.

  20. Hierarchical Partitioning of Metazoan Protein Conservation Profiles Provides New Functional Insights

    Science.gov (United States)

    Witztum, Jonathan; Persi, Erez; Horn, David; Pasmanik-Chor, Metsada; Chor, Benny

    2014-01-01

    The availability of many complete, annotated proteomes enables the systematic study of the relationships between protein conservation and functionality. We explore this question based solely on the presence or absence of protein homologues (a.k.a. conservation profiles). We study 18 metazoans, from two distinct points of view: the human's and the fly's. Using the GOrilla gene ontology (GO) analysis tool, we explore functional enrichment of the “universal proteins”, those with homologues in all 17 other species, and of the “non-universal proteins”. A large number of GO terms are strongly enriched in both human and fly universal proteins. Most of these functions are known to be essential. A smaller number of GO terms, exhibiting markedly different properties, are enriched in both human and fly non-universal proteins. We further explore the non-universal proteins, whose conservation profiles are consistent with the “tree of life” (TOL consistent), as well as the TOL inconsistent proteins. Finally, we applied Quantum Clustering to the conservation profiles of the TOL consistent proteins. Each cluster is strongly associated with one or a small number of specific monophyletic clades in the tree of life. The proteins in many of these clusters exhibit strong functional enrichment associated with the “life style” of the related clades. Most previous approaches for studying function and conservation are “bottom up”, studying protein families one by one, and separately assessing the conservation of each. By way of contrast, our approach is “top down”. We globally partition the set of all proteins hierarchically, as described above, and then identify protein families enriched within different subdivisions. While supporting previous findings, our approach also provides a tool for discovering novel relations between protein conservation profiles, functionality, and evolutionary history as represented by the tree of life. PMID:24594619

  1. Pattern-Driven Architectural Partitioning. Balancing Functional and Non-functional Requirements

    NARCIS (Netherlands)

    Harrison, Neil; Avgeriou, Paris

    2007-01-01

    One of the vexing challenges of software architecture is the problem of satisfying the functional specifications of the system to be created while at the same time meeting its non-functional needs. In this work we focus on the early stages of the software architecture process, when initial

  2. Many body topological invariants in topological phases with point group symmetry

    Science.gov (United States)

    Shiozaki, Ken; Shapourian, Hassan; Ryu, Shinsei

    A way to detect topological phases from a given short-range entangled state is discussed. Many body topological invariants are defined as partition functions of topological quantum field theory (TQFT) on space-time manifolds, for example, real projective spaces. It is expected that by translating TQFT partition functions to the operator formalism one can get a definition of many body topological invariants made from ground state wave functions and symmetry operations. We propose that a kind of non-local operator, the ''partial point group transformation'', on a short-range entangled state is a unified measure to detect topologically nontrivial phases with point group symmetry. In this talk, I introduce (i) the partial rotations on (2 +1)d chiral superconductors, and (ii) the Z16 invariant from the partial inversion on (3 +1)d superconductors. These partial point group transformations can be analytically calculated from the boundary theory. We confirmed that analytical results from the boundary theory match with direct numerical calculations on bulk.

  3. The ABCD of topological recursion

    DEFF Research Database (Denmark)

    Andersen, Jorgen Ellegaard; Borot, Gaëtan; Chekhov, Leonid O.

    an interesting problem which we study here. We provide some elementary, Lie-algebraic tools to address this problem, and give some elements of classification for dim V = 2. We also describe four more interesting classes of quantum Airy structures, coming from respectively Frobenius algebras (here we retrieve...... the 2d TQFT partition function as a special case), non-commutative Frobenius algebras, loop spaces of Frobenius algebras and a Z2-invariant version of the latter. This Z2-invariant version in the case of a semi-simple Frobenius algebra corresponds to the topological recursion of math-ph/0702045....

  4. Robust extrapolation scheme for fast estimation of 3D Ising field partition functions: application to within subject fMRI data

    Energy Technology Data Exchange (ETDEWEB)

    Risser, L.; Vincent, T.; Ciuciu, Ph. [NeuroSpin CEA, F-91191 Gif sur Yvette (France); Risser, L.; Vincent, T. [Laboratoire de Neuroimagerie Assistee par Ordinateur (LNAO) CEA - DSV/I2BM/NEUROSPIN (France); Risser, L. [Institut de mecanique des fluides de Toulouse (IMFT), CNRS: UMR5502 - Universite Paul Sabatier - Toulouse III - Institut National Polytechnique de Toulouse - INPT (France); Idier, J. [Institut de Recherche en Communications et en Cybernetique de Nantes (IRCCyN) CNRS - UMR6597 - Universite de Nantes - ecole Centrale de Nantes - Ecole des Mines de Nantes - Ecole Polytechnique de l' Universite de Nantes (France)

    2009-07-01

    In this paper, we present a first numerical scheme to estimate Partition Functions (PF) of 3D Ising fields. Our strategy is applied to the context of the joint detection-estimation of brain activity from functional Magnetic Resonance Imaging (fMRI) data, where the goal is to automatically recover activated regions and estimate region-dependent, hemodynamic filters. For any region, a specific binary Markov random field may embody spatial correlation over the hidden states of the voxels by modeling whether they are activated or not. To make this spatial regularization fully adaptive, our approach is first based upon it, classical path-sampling method to approximate a small subset of reference PFs corresponding to pre-specified regions. Then, file proposed extrapolation method allows its to approximate the PFs associated with the Ising fields defined over the remaining brain regions. In comparison with preexisting approaches, our method is robust; to topological inhomogeneities in the definition of the reference regions. As a result, it strongly alleviates the computational burden and makes spatially adaptive regularization of whole brain fMRI datasets feasible. (authors)

  5. Path-integral bosonization in topologically nontrivial sectors: The non-Abelian case

    International Nuclear Information System (INIS)

    Cabra, D.; Manias, M.V.; Schaposnik, F.A.; Trobo, M.

    1991-01-01

    We present a path-integral bosonization approach which allows us to take into account nontrivial topological sectors in two-dimensional models such as two-dimensional QCD. Because of the existence of fermionic zero modes, the partition function receives a contribution only from the topologically trivial (n=0) sector. However, certain fermionic correlation functions (constructed from chiral-charge-nonconserving operators) become nonvanishing when one takes into account n≠0 sectors

  6. Path-integral bosonization in topologically nontrivial sectors: The non-Abelian case

    Energy Technology Data Exchange (ETDEWEB)

    Cabra, D.; Manias, M.V. (Departamento de Fisica, Universidad Nacional de La Plata, CC 67, 1900 La Plata, Argentina (AR) Consejo Nacional de Investigaciones Cientificas y Tecnicas, Argentina (AR)); Schaposnik, F.A. (Laboratoire de Physique Theorique Particules Elementaires, Universite de Paris 7, Tour 24-5 et., 2 Place Jussieu, 75251 Paris CEDEX 05, France (FR) Departamento de Fisica, Universidad Nacional de La Plata, CC67 1900 La Plata, Argentina (AR) Comision de Investigaciones Cientificas Buenos Aires (CICBA), Buenos Aires, Argentina (AR)); Trobo, M. (Departamento de Fisica, Universidad Nacional de La Plata, CC 67, 1900 La Plata, Argentina Consejo Nacional de Investigaciones Cientificas y Tecnicas, Argentina (AR))

    1991-05-15

    We present a path-integral bosonization approach which allows us to take into account nontrivial topological sectors in two-dimensional models such as two-dimensional QCD. Because of the existence of fermionic zero modes, the partition function receives a contribution only from the topologically trivial ({ital n}=0) sector. However, certain fermionic correlation functions (constructed from chiral-charge-nonconserving operators) become nonvanishing when one takes into account {ital n}{ne}0 sectors.

  7. Partitioning taxonomic diversity of aquatic insect assemblages and functional feeding groups in Neotropical Savanna headwater streams

    Science.gov (United States)

    Biological diversity can be divided into: alpha (α, local), beta (β, difference in assemblage composition among locals), and gamma (γ, total diversity). We assessed the partitioning of taxonomic diversity of Ephemeroptera, Plecoptera and Trichoptera (EPT) and of ...

  8. Exact partition functions for deformed N=2 theories with N{sub f}=4 flavours

    Energy Technology Data Exchange (ETDEWEB)

    Beccaria, Matteo; Fachechi, Alberto; Macorini, Guido; Martina, Luigi [Dipartimento di Matematica e Fisica Ennio De Giorgi, Università del Salento,Via Arnesano, 73100 Lecce (Italy); INFN, Via Arnesano, 73100 Lecce (Italy)

    2016-12-07

    We consider the Ω-deformed N=2SU(2) gauge theory in four dimensions with N{sub f}=4 massive fundamental hypermultiplets. The low energy effective action depends on the deformation parameters ε{sub 1},ε{sub 2}, the scalar field expectation value a, and the hypermultiplet masses m=(m{sub 1},m{sub 2},m{sub 3},m{sub 4}). Motivated by recent findings in the N=2{sup ∗} theory, we explore the theories that are characterized by special fixed ratios ε{sub 2}/ε{sub 1} and m/ε{sub 1} and propose a simple condition on the structure of the multi-instanton contributions to the prepotential determining the effective action. This condition determines a finite set Π{sub N} of special points such that the prepotential has N poles at fixed positions independent on the instanton number. In analogy with what happens in the N=2{sup ∗} gauge theory, the full prepotential of the Π{sub N} theories may be given in closed form as an explicit function of a and the modular parameter q appearing in special combinations of Eisenstein series and Jacobi theta functions with well defined modular properties. The resulting finite pole partition functions are related by AGT correspondence to special 4-point spherical conformal blocks of the Virasoro algebra. We examine in full details special cases where the closed expression of the block is known and confirms our Ansatz. We systematically study the special features of Zamolodchikov’s recursion for the Π{sub N} conformal blocks. As a result, we provide a novel effective recursion relation that can be exactly solved and allows to prove the conjectured closed expressions analytically in the case of the Π{sub 1} and Π{sub 2} conformal blocks.

  9. Functional Partitioning to Optimize End-to-End Performance on Many-core Architectures

    Energy Technology Data Exchange (ETDEWEB)

    Li, Min [Virginia Polytechnic Institute and State University (Virginia Tech); Vazhkudai, Sudharshan S [ORNL; Butt, Ali R [Virginia Polytechnic Institute and State University (Virginia Tech); Meng, Fei [ORNL; Ma, Xiaosong [ORNL; Kim, Youngjae [ORNL; Engelmann, Christian [ORNL; Shipman, Galen M [ORNL

    2010-01-01

    Scaling computations on emerging massive-core supercomputers is a daunting task, which coupled with the significantly lagging system I/O capabilities exacerbates applications end-to-end performance. The I/O bottleneck often negates potential performance benefits of assigning additional compute cores to an application. In this paper, we address this issue via a novel functional partitioning (FP) runtime environment that allocates cores to specific application tasks - checkpointing, de-duplication, and scientific data format transformation - so that the deluge of cores can be brought to bear on the entire gamut of application activities. The focus is on utilizing the extra cores to support HPC application I/O activities and also leverage solid-state disks in this context. For example, our evaluation shows that dedicating 1 core on an oct-core machine for checkpointing and its assist tasks using FP can improve overall execution time of a FLASH benchmark on 80 and 160 cores by 43.95% and 41.34%, respectively.

  10. Image contrast enhancement through regional application of partitioned iterated function systems

    Science.gov (United States)

    Koutsouri, Georgia D.; Economopoulos, Theodore L.; Matsopoulos, George K.

    2013-01-01

    A new technique is presented for enhancing the contrast in digital images, combining the theory of partitioned iterated function system (PIFS) and image segmentation. The image is first segmented through the region growing segmentation technique, and the PIFS enhancement algorithm is applied separately to each image segment. The defined PIFS of each section is modeled by a contractive transformation, which consists of an affine spatial transform, as well as the linear transform of the graylevels of image segment pixels. The transformation of the graylevels is determined by two parameters that adjust the brightness and contrast of the transformed image segment. After the PIFS algorithm is applied to each extracted image segment, a lowpass version of the original image is created. The contrast-enhanced image is obtained by suitably combining the original image with its lowpass version. The proposed regional PIFS approach was applied to numerous test images, ranging from medical data of various modalities to standard images. The obtained quantitative and qualitative results showed superior performance on behalf of the proposed method when compared with three other widely used contrast enhancement methods, namely, contrast stretching, unsharp masking, and contrast-limited adaptive histogram equalization.

  11. Counting complex disordered states by efficient pattern matching: chromatic polynomials and Potts partition functions

    Science.gov (United States)

    Timme, Marc; van Bussel, Frank; Fliegner, Denny; Stolzenberg, Sebastian

    2009-02-01

    Counting problems, determining the number of possible states of a large system under certain constraints, play an important role in many areas of science. They naturally arise for complex disordered systems in physics and chemistry, in mathematical graph theory, and in computer science. Counting problems, however, are among the hardest problems to access computationally. Here, we suggest a novel method to access a benchmark counting problem, finding chromatic polynomials of graphs. We develop a vertex-oriented symbolic pattern matching algorithm that exploits the equivalence between the chromatic polynomial and the zero-temperature partition function of the Potts antiferromagnet on the same graph. Implementing this bottom-up algorithm using appropriate computer algebra, the new method outperforms standard top-down methods by several orders of magnitude, already for moderately sized graphs. As a first application, we compute chromatic polynomials of samples of the simple cubic lattice, for the first time computationally accessing three-dimensional lattices of physical relevance. The method offers straightforward generalizations to several other counting problems.

  12. Counting complex disordered states by efficient pattern matching: chromatic polynomials and Potts partition functions

    International Nuclear Information System (INIS)

    Timme, Marc; Van Bussel, Frank; Fliegner, Denny; Stolzenberg, Sebastian

    2009-01-01

    Counting problems, determining the number of possible states of a large system under certain constraints, play an important role in many areas of science. They naturally arise for complex disordered systems in physics and chemistry, in mathematical graph theory, and in computer science. Counting problems, however, are among the hardest problems to access computationally. Here, we suggest a novel method to access a benchmark counting problem, finding chromatic polynomials of graphs. We develop a vertex-oriented symbolic pattern matching algorithm that exploits the equivalence between the chromatic polynomial and the zero-temperature partition function of the Potts antiferromagnet on the same graph. Implementing this bottom-up algorithm using appropriate computer algebra, the new method outperforms standard top-down methods by several orders of magnitude, already for moderately sized graphs. As a first application, we compute chromatic polynomials of samples of the simple cubic lattice, for the first time computationally accessing three-dimensional lattices of physical relevance. The method offers straightforward generalizations to several other counting problems.

  13. Three-Dimensional Dynamic Topology Optimization with Frequency Constraints Using Composite Exponential Function and ICM Method

    Directory of Open Access Journals (Sweden)

    Hongling Ye

    2015-01-01

    Full Text Available The dynamic topology optimization of three-dimensional continuum structures subject to frequency constraints is investigated using Independent Continuous Mapping (ICM design variable fields. The composite exponential function (CEF is selected to be a filter function which recognizes the design variables and to implement the changing process of design variables from “discrete” to “continuous” and back to “discrete.” Explicit formulations of frequency constraints are given based on filter functions, first-order Taylor series expansion. And an improved optimal model is formulated using CEF and the explicit frequency constraints. Dual sequential quadratic programming (DSQP algorithm is used to solve the optimal model. The program is developed on the platform of MSC Patran & Nastran. Finally, numerical examples are given to demonstrate the validity and applicability of the proposed method.

  14. Quantum Chemical Topology of the Electron Localization Function in the Field of Attosecond Electron Dynamics.

    Science.gov (United States)

    Parise, Angela; Alvarez-Ibarra, Aurelio; Wu, Xiaojing; Zhao, Xiaodong; Pilmé, Julien; Lande, Aurélien de la

    2018-02-15

    We report original analyses of attosecond electron dynamics of molecules subject to collisions by high energy charged particles based on Real-Time Time-Dependent-Density-Functional-Theory simulations coupled to Topological Analyses of the Electron Localization Function (TA-TD-ELF). We investigate irradiation of water and guanine. TA-TD-ELF enables qualitative and quantitative characterizations of bond breaking and formation, of charge migration within topological basins, or of electron attachment to the colliding particle. Whereas the Lewis-VSEPR structure of gas phase water is blown out within a few attoseconds after collision, that of guanine is far more robust and reconstitutes rapidly after impact even though the molecule remains electronically excited. This difference is accounted by the presence of the electron bath surrounding the impact point which enables energy relaxation within the molecule. Our approach should stimulate future studies to unravel the early steps following irradiation of various types of systems (isolated molecules, biomolecules, nanoclusters, solids, etc.) and is also readily applicable to irradiation by photons of various energies.

  15. An experimental study of the partitioning of trace elements between rutile and silicate melt as a function of oxygen fugacity.

    Science.gov (United States)

    Mallmann, Guilherme; Fonseca, Raúl O C; Silva, Adolfo B

    2014-12-01

    Subduction zone or arc magmas are known to display a characteristic depletion of High Field Strength Elements (HFSE) relative to other similarly incompatible elements, which can be attributed to the presence of the accessory mineral rutile (TiO2) in the residual slab. Here we show that the partitioning behavior of vanadium between rutile and silicate melt varies from incompatible (∼0.1) to compatible (∼18) as a function of oxygen fugacity. We also confirm that the HFSE are compatible in rutile, with D(Ta)> D(Nb)> (D(Hf)>/∼ D(Zr), but that the level of compatibility is strongly dependent on melt composition, with partition coefficients increasing about one order of magnitude with increasing melt polymerization (or decreasing basicity). Our partitioning results also indicate that residual rutile may fractionate U from Th due to the contrasting (over 2 orders of magnitude) partitioning between these two elements. We confirm that, in addition to the HFSE, Cr, Cu, Zn and W are compatible in rutile at all oxygen fugacity conditions.

  16. An experimental study of the partitioning of trace elements between rutile and silicate melt as a function of oxygen fugacity

    Directory of Open Access Journals (Sweden)

    GUILHERME MALLMANN

    2014-12-01

    Full Text Available Subduction zone or arc magmas are known to display a characteristic depletion of High Field Strength Elements (HFSE relative to other similarly incompatible elements, which can be attributed to the presence of the accessory mineral rutile (TiO2 in the residual slab. Here we show that the partitioning behavior of vanadium between rutile and silicate melt varies from incompatible (∼0.1 to compatible (∼18 as a function of oxygen fugacity. We also confirm that the HFSE are compatible in rutile, with D(Ta> D(Nb>> (D(Hf>/∼ D(Zr, but that the level of compatibility is strongly dependent on melt composition, with partition coefficients increasing about one order of magnitude with increasing melt polymerization (or decreasing basicity. Our partitioning results also indicate that residual rutile may fractionate U from Th due to the contrasting (over 2 orders of magnitude partitioning between these two elements. We confirm that, in addition to the HFSE, Cr, Cu, Zn and W are compatible in rutile at all oxygen fugacity conditions.

  17. Topological classification of Chern-type insulators by means of the photonic Green function

    Science.gov (United States)

    Silveirinha, Mário G.

    2018-03-01

    The Chern topological numbers of a material system are traditionally written in terms of the Berry curvature which depends explicitly on the material band structure and on the Bloch eigenwaves. Here, we demonstrate that it is possible to calculate the gap Chern numbers of a photonic platform without having any detailed knowledge of its band structure, relying simply on the system photonic Green function. It is shown that the gap Chern number is given by an integral of the photonic Green function along a line of the complex frequency plane parallel to the imaginary axis. Our theory applies to arbitrary frequency dispersive fully three-dimensional photonic crystals, as well as to the case of electromagnetic continua with no intrinsic periodicity.

  18. Topology essentials

    CERN Document Server

    Milewski, Emil G

    2013-01-01

    REA's Essentials provide quick and easy access to critical information in a variety of different fields, ranging from the most basic to the most advanced. As its name implies, these concise, comprehensive study guides summarize the essentials of the field covered. Essentials are helpful when preparing for exams, doing homework and will remain a lasting reference source for students, teachers, and professionals. Topology includes an overview of elementary set theory, relations and functions, ordinals and cardinals, topological spaces, continuous functions, metric spaces and normed spaces, co

  19. Effect of partition board color on mood and autonomic nervous function.

    Science.gov (United States)

    Sakuragi, Sokichi; Sugiyama, Yoshiki

    2011-12-01

    The purpose of this study was to evaluate the effects of the presence or absence (control) of a partition board and its color (red, yellow, blue) on subjective mood ratings and changes in autonomic nervous system indicators induced by a video game task. The increase in the mean Profile of Mood States (POMS) Fatigue score and mean Oppressive feeling rating after the task was lowest with the blue partition board. Multiple-regression analysis identified oppressive feeling and error scores on the second half of the task as statistically significant contributors to Fatigue. While explanatory variables were limited to the physiological indices, multiple-regression analysis identified a significant contribution of autonomic reactivity (assessed by heart rate variability) to Fatigue. These results suggest that a blue partition board would reduce task-induced subjective fatigue, in part by lowering the oppressive feeling of being enclosed during the task, possibly by increasing autonomic reactivity.

  20. Experimental and density functional study of Mn doped Bi2Te3 topological insulator

    Directory of Open Access Journals (Sweden)

    A. Ghasemi

    2016-12-01

    Full Text Available We present a nanoscale structural and density functional study of the Mn doped 3D topological insulator Bi2Te3. X-ray absorption near edge structure shows that Mn has valency of nominally 2+. Extended x-ray absorption fine structure spectroscopy in combination with electron energy loss spectroscopy (EELS shows that Mn is a substitutional dopant of Bi and Te and also resides in the van der Waals gap between the quintuple layers of Bi2Te3. Combination of aberration-corrected scanning transmission electron microscopy and EELS shows that Mn substitution of Te occurs in film regions with increased Mn concentration. First-principles calculations show that the Mn dopants favor octahedral sites and are ferromagnetically coupled.

  1. Understanding reaction mechanisms in organic chemistry from catastrophe theory applied to the electron localization function topology.

    Science.gov (United States)

    Polo, Victor; Andres, Juan; Berski, Slawomir; Domingo, Luis R; Silvi, Bernard

    2008-08-07

    Thom's catastrophe theory applied to the evolution of the topology of the electron localization function (ELF) gradient field constitutes a way to rationalize the reorganization of electron pairing and a powerful tool for the unambiguous determination of the molecular mechanisms of a given chemical reaction. The identification of the turning points connecting the ELF structural stability domains along the reaction pathway allows a rigorous characterization of the sequence of electron pair rearrangements taking place during a chemical transformation, such as multiple bond forming/breaking processes, ring closure processes, creation/annihilation of lone pairs, transformations of C-C multiple bonds into single ones. The reaction mechanism of some relevant organic reactions: Diels-Alder, 1,3-dipolar cycloaddition and Cope rearrangement are reviewed to illustrate the potential of the present approach.

  2. Network topology and functional connectivity disturbances precede the onset of Huntington's disease.

    Science.gov (United States)

    Harrington, Deborah L; Rubinov, Mikail; Durgerian, Sally; Mourany, Lyla; Reece, Christine; Koenig, Katherine; Bullmore, Ed; Long, Jeffrey D; Paulsen, Jane S; Rao, Stephen M

    2015-08-01

    Cognitive, motor and psychiatric changes in prodromal Huntington's disease have nurtured the emergent need for early interventions. Preventive clinical trials for Huntington's disease, however, are limited by a shortage of suitable measures that could serve as surrogate outcomes. Measures of intrinsic functional connectivity from resting-state functional magnetic resonance imaging are of keen interest. Yet recent studies suggest circumscribed abnormalities in resting-state functional magnetic resonance imaging connectivity in prodromal Huntington's disease, despite the spectrum of behavioural changes preceding a manifest diagnosis. The present study used two complementary analytical approaches to examine whole-brain resting-state functional magnetic resonance imaging connectivity in prodromal Huntington's disease. Network topology was studied using graph theory and simple functional connectivity amongst brain regions was explored using the network-based statistic. Participants consisted of gene-negative controls (n = 16) and prodromal Huntington's disease individuals (n = 48) with various stages of disease progression to examine the influence of disease burden on intrinsic connectivity. Graph theory analyses showed that global network interconnectivity approximated a random network topology as proximity to diagnosis neared and this was associated with decreased connectivity amongst highly-connected rich-club network hubs, which integrate processing from diverse brain regions. However, functional segregation within the global network (average clustering) was preserved. Functional segregation was also largely maintained at the local level, except for the notable decrease in the diversity of anterior insula intermodular-interconnections (participation coefficient), irrespective of disease burden. In contrast, network-based statistic analyses revealed patterns of weakened frontostriatal connections and strengthened frontal-posterior connections that evolved as disease

  3. Topological rings

    CERN Document Server

    Warner, S

    1993-01-01

    This text brings the reader to the frontiers of current research in topological rings. The exercises illustrate many results and theorems while a comprehensive bibliography is also included. The book is aimed at those readers acquainted with some very basic point-set topology and algebra, as normally presented in semester courses at the beginning graduate level or even at the advanced undergraduate level. Familiarity with Hausdorff, metric, compact and locally compact spaces and basic properties of continuous functions, also with groups, rings, fields, vector spaces and modules, and with Zorn''s Lemma, is also expected.

  4. On Partition of Unities Generated by Entire Functions and Gabor Frames in L2(Rd) and ℓ2(Zd)

    DEFF Research Database (Denmark)

    Christensen, Ole; Kim, Hong Oh; Kim, Rae Young

    2016-01-01

    We characterize the entire functions P of d variables, d≥2, for which the Zd-translates of Pχ[0,N]d satisfy the partition of unity for some N∈N. In contrast to the one-dimensional case, these entire functions are not necessarily periodic. In the case where P is a trigonometric polynomial, we char...... of matrix-generated Gabor frames in L2(Rd), with small support and high smoothness. By sampling this yields dual pairs of finite Gabor frames in ℓ2(Zd)....

  5. On the relationship between molecular spectroscopy and statistical mechanics: calculation of vibrational–rotational energy levels and partition functions in the ground electronic state of BC2

    Directory of Open Access Journals (Sweden)

    STANKA JEROSIMIĆ

    2011-04-01

    Full Text Available The results of extensive ab initio calculations of the vibrational–rotational energy spectrum in the ground electronic state of the BC2 molecule are presented. These data were employed to discuss the evaluation of the corresponding partition functions. Special attention was paid to the problems connected with the calculation of the partition functions for the bending vibrations and rotations about the axis corresponding to the smallest moment of inertia.

  6. Coding Partitions

    Directory of Open Access Journals (Sweden)

    Fabio Burderi

    2007-05-01

    Full Text Available Motivated by the study of decipherability conditions for codes weaker than Unique Decipherability (UD, we introduce the notion of coding partition. Such a notion generalizes that of UD code and, for codes that are not UD, allows to recover the ``unique decipherability" at the level of the classes of the partition. By tacking into account the natural order between the partitions, we define the characteristic partition of a code X as the finest coding partition of X. This leads to introduce the canonical decomposition of a code in at most one unambiguouscomponent and other (if any totally ambiguouscomponents. In the case the code is finite, we give an algorithm for computing its canonical partition. This, in particular, allows to decide whether a given partition of a finite code X is a coding partition. This last problem is then approached in the case the code is a rational set. We prove its decidability under the hypothesis that the partition contains a finite number of classes and each class is a rational set. Moreover we conjecture that the canonical partition satisfies such a hypothesis. Finally we consider also some relationships between coding partitions and varieties of codes.

  7. Efficient methods for finding transition states in chemical reactions: comparison of improved dimer method and partitioned rational function optimization method.

    Science.gov (United States)

    Heyden, Andreas; Bell, Alexis T; Keil, Frerich J

    2005-12-08

    A combination of interpolation methods and local saddle-point search algorithms is probably the most efficient way of finding transition states in chemical reactions. Interpolation methods such as the growing-string method and the nudged-elastic band are able to find an approximation to the minimum-energy pathway and thereby provide a good initial guess for a transition state and imaginary mode connecting both reactant and product states. Since interpolation methods employ usually just a small number of configurations and converge slowly close to the minimum-energy pathway, local methods such as partitioned rational function optimization methods using either exact or approximate Hessians or minimum-mode-following methods such as the dimer or the Lanczos method have to be used to converge to the transition state. A modification to the original dimer method proposed by [Henkelman and Jonnson J. Chem. Phys. 111, 7010 (1999)] is presented, reducing the number of gradient calculations per cycle from six to four gradients or three gradients and one energy, and significantly improves the overall performance of the algorithm on quantum-chemical potential-energy surfaces, where forces are subject to numerical noise. A comparison is made between the dimer methods and the well-established partitioned rational function optimization methods for finding transition states after the use of interpolation methods. Results for 24 different small- to medium-sized chemical reactions covering a wide range of structural types demonstrate that the improved dimer method is an efficient alternative saddle-point search algorithm on medium-sized to large systems and is often even able to find transition states when partitioned rational function optimization methods fail to converge.

  8. Electron spectral functions in a quantum dimer model for topological metals

    Science.gov (United States)

    Huber, Sebastian; Feldmeier, Johannes; Punk, Matthias

    2018-02-01

    We study single-electron spectral functions in a quantum dimer model introduced by Punk, Allais, and Sachdev in Ref. [M. Punk, A. Allais, and S. Sachdev, Proc. Natl. Acad. Sci. U.S.A. 112, 9552 (2015), 10.1073/pnas.1512206112]. The Hilbert space of this model is spanned by hard-core coverings of the square lattice with two types of dimers: ordinary bosonic spin singlets, as well as fermionic dimers carrying charge +e and spin 1/2, which can be viewed as bound states of spinons and holons in a doped resonating valence bond (RVB) liquid. This model realizes a metallic phase with topological order and captures several properties of the pseudogap phase in hole-doped cuprates, such as a reconstructed Fermi surface with small hole pockets and a highly anisotropic quasiparticle residue in the absence of any broken symmetries. Using a combination of exact diagonalization and analytical methods, we compute electron spectral functions and show that this model indeed exhibits a sizable antinodal pseudogap, with a momentum dependence deviating from a simple d -wave form, in accordance with experiments on underdoped cuprates.

  9. The Effects of Long-term Abacus Training on Topological Properties of Brain Functional Networks.

    Science.gov (United States)

    Weng, Jian; Xie, Ye; Wang, Chunjie; Chen, Feiyan

    2017-08-18

    Previous studies in the field of abacus-based mental calculation (AMC) training have shown that this training has the potential to enhance a wide variety of cognitive abilities. It can also generate specific changes in brain structure and function. However, there is lack of studies investigating the impact of AMC training on the characteristics of brain networks. In this study, utilizing graph-based network analysis, we compared topological properties of brain functional networks between an AMC group and a matched control group. Relative to the control group, the AMC group exhibited higher nodal degrees in bilateral calcarine sulcus and increased local efficiency in bilateral superior occipital gyrus and right cuneus. The AMC group also showed higher nodal local efficiency in right fusiform gyrus, which was associated with better math ability. However, no relationship was significant in the control group. These findings provide evidence that long-term AMC training may improve information processing efficiency in visual-spatial related regions, which extend our understanding of training plasticity at the brain network level.

  10. Analyzing topological characteristics of neuronal functional networks in the rat brain

    International Nuclear Information System (INIS)

    Lu, Hu; Yang, Shengtao; Song, Yuqing; Wei, Hui

    2014-01-01

    In this study, we recorded spike trains from brain cortical neurons of several behavioral rats in vivo by using multi-electrode recordings. An NFN was constructed in each trial, obtaining a total of 150 NFNs in this study. The topological characteristics of NFNs were analyzed by using the two most important characteristics of complex networks, namely, small-world structure and community structure. We found that the small-world properties exist in different NFNs constructed in this study. Modular function Q was used to determine the existence of community structure in NFNs, through which we found that community-structure characteristics, which are related to recorded spike train data sets, are more evident in the Y-maze task than in the DM-GM task. Our results can also be used to analyze further the relationship between small-world characteristics and the cognitive behavioral responses of rats. - Highlights: • We constructed the neuronal function networks based on the recorded neurons. • We analyzed the two main complex network characteristics, namely, small-world structure and community structure. • NFNs which were constructed based on the recorded neurons in this study exhibit small-world properties. • Some NFNs have community structure characteristics

  11. The topology of the bacterial co-conserved protein network and its implications for predicting protein function

    Directory of Open Access Journals (Sweden)

    Leach Sonia M

    2008-06-01

    Full Text Available Abstract Background Protein-protein interactions networks are most often generated from physical protein-protein interaction data. Co-conservation, also known as phylogenetic profiles, is an alternative source of information for generating protein interaction networks. Co-conservation methods generate interaction networks among proteins that are gained or lost together through evolution. Co-conservation is a particularly useful technique in the compact bacteria genomes. Prior studies in yeast suggest that the topology of protein-protein interaction networks generated from physical interaction assays can offer important insight into protein function. Here, we hypothesize that in bacteria, the topology of protein interaction networks derived via co-conservation information could similarly improve methods for predicting protein function. Since the topology of bacteria co-conservation protein-protein interaction networks has not previously been studied in depth, we first perform such an analysis for co-conservation networks in E. coli K12. Next, we demonstrate one way in which network connectivity measures and global and local function distribution can be exploited to predict protein function for previously uncharacterized proteins. Results Our results showed, like most biological networks, our bacteria co-conserved protein-protein interaction networks had scale-free topologies. Our results indicated that some properties of the physical yeast interaction network hold in our bacteria co-conservation networks, such as high connectivity for essential proteins. However, the high connectivity among protein complexes in the yeast physical network was not seen in the co-conservation network which uses all bacteria as the reference set. We found that the distribution of node connectivity varied by functional category and could be informative for function prediction. By integrating of functional information from different annotation sources and using the

  12. Voxel Scale Complex Networks of Functional Connectivity in the Rat Brain: Neurochemical State Dependence of Global and Local Topological Properties

    Directory of Open Access Journals (Sweden)

    Adam J. Schwarz

    2012-01-01

    Full Text Available Network analysis of functional imaging data reveals emergent features of the brain as a function of its topological properties. However, the brain is not a homogeneous network, and the dependence of functional connectivity parameters on neuroanatomical substrate and parcellation scale is a key issue. Moreover, the extent to which these topological properties depend on underlying neurochemical changes remains unclear. In the present study, we investigated both global statistical properties and the local, voxel-scale distribution of connectivity parameters of the rat brain. Different neurotransmitter systems were stimulated by pharmacological challenge (d-amphetamine, fluoxetine, and nicotine to discriminate between stimulus-specific functional connectivity and more general features of the rat brain architecture. Although global connectivity parameters were similar, mapping of local connectivity parameters at high spatial resolution revealed strong neuroanatomical dependence of functional connectivity in the rat brain, with clear differentiation between the neocortex and older brain regions. Localized foci of high functional connectivity independent of drug challenge were found in the sensorimotor cortices, consistent with the high neuronal connectivity in these regions. Conversely, the topological properties and node roles in subcortical regions varied with neurochemical state and were dependent on the specific dynamics of the different functional processes elicited.

  13. Topological terms induced by finite temperature and density fluctuations

    International Nuclear Information System (INIS)

    Niemi, A.J.; Department of Physics, The Ohio State University, Columbus, Ohio 43210)

    1986-01-01

    In (3+1)-dimensional finite-temperature and -density SU(2) gauge theories with left-handed fermions, the three-dimensional Chern-Simons term (topological mass) can be induced by radiative corrections. This result is derived by use of a family's index theorem which also implies that in many other quantum field theories various additional lower-dimensional topological terms can be induced. In the high-temperature limit these terms dominate the partition function, which suggests applications to early-Universe cosmology

  14. Lattice formulation of a two-dimensional topological field theory

    International Nuclear Information System (INIS)

    Ohta, Kazutoshi; Takimi, Tomohisa

    2007-01-01

    We investigate an integrable property and the observables of 2-dimensional N=(4,4) topological field theory defined on a discrete lattice by using the 'orbifolding' and 'deconstruction' methods. We show that our lattice model is integrable and, for this reason, the partition function reduces to matrix integrals of scalar fields on the lattice sites. We elucidate meaningful differences between a discrete lattice and a differentiable manifold. This is important for studying topological quantities on a lattice. We also propose a new construction of N=(2,2) supersymmetric lattice theory, which is realized through a suitable truncation of scalar fields from the N=(4,4) theory. (author)

  15. Conservation of Fold and Topology of Functional Elements in Thiamin Pyrophosphate Enzymes

    Science.gov (United States)

    Dominiak, P.; Ciszak, E. M.

    2005-01-01

    Thiamin pyrophosphate (TPP)-dependent enzymes are a highly divergent family of proteins binding both TPP and metal ions. They perform decarboxylation-hydroxyaldehydes. Prior -ketoacids and of a common - (O=)C-C(OH)- fragment of to knowledge of three-dimensional structures of these enzmes, the GDGY25-30NN sequence was used to identify these enzymes. Subsequently, a number of structural studies on those enzymes revealed multi-subunit organization and the features of the two duplicate cofactor binding sites. Analyzing the structures of 44 structurally known enzymes, we found that the common structure of these enzymes is reduced to 180-220 amino acid long fragments of two PP and two PYR domains that form the [PP:PYR]2 binding center of two cofactor molecules. The structures of PP and PYR are arranged in a similar fold-sheet with triplets of helices on both sides.Dconsisting of a six-stranded Residues surrounding the cofactors are not strictly conserved, but they provide the same interatomic contacts required for the catalytic functions that these enzymes perform while maintaining interactive structural integrity. These structural and functional amino acids are topological counterparts located in the same positions of the conserved fold of sets of PP and PYR domains. Additional parallels include short fragments of sequences that link these amino acids to the fold and function. This report on the structural commonalities amongst TPP dependent enzymes is thought to contribute new approaches to annotation that may assist in advancing the functional proteomics of TPP dependent enzymes, and trace their complexity within evolutionary context.

  16. Marine microalgae growth and carbon partitioning as a function of nutrient availability.

    Science.gov (United States)

    Fernandes, Tomásia; Fernandes, Igor; Andrade, Carlos A P; Cordeiro, Nereida

    2016-08-01

    To understand in which way the structural differences of three marine microalgae (Nannochloropsis gaditana, Rhodomonas marina and Isochrysis sp.) affect their carbon partitioning, growth and applicability; a stoichiometric imbalance was imposed by steady carbon and other nutrients variation. Towards high nutrients concentrations/low carbon availability a decrease of 12-51% in C/N microalgae ratio was observed and maximum cell densities were achieved. Moreover, linear correlation between the nutrient input and microalgae protein content were observed. The macromolecular ratios pointed that carbohydrate was the main contributor for the C/N decrement. Although lipid content in R. marina remained constant throughout the experiment, a rise of 37-107% in N. gaditana and Isochrysis sp. was verified. Lipid fractions revealed high percentages of glycolipids in all microalgae (57-73% of total lipids). The present study shows an easy way to understand and modulate microalgae carbon partitioning relying on the field of application. Copyright © 2016 Elsevier Ltd. All rights reserved.

  17. Aberrant topologies and reconfiguration pattern of functional brain network in children with second language reading impairment.

    Science.gov (United States)

    Liu, Lanfang; Li, Hehui; Zhang, Manli; Wang, Zhengke; Wei, Na; Liu, Li; Meng, Xiangzhi; Ding, Guosheng

    2016-07-01

    Prior work has extensively studied neural deficits in children with reading impairment (RI) in their native language but has rarely examined those of RI children in their second language (L2). A recent study revealed that the function of the local brain regions was disrupted in children with RI in L2, but it is not clear whether the disruption also occurs at a large-scale brain network level. Using fMRI and graph theoretical analysis, we explored the topology of the whole-brain functional network during a phonological rhyming task and network reconfigurations across task and short resting phases in Chinese children with English reading impairment versus age-matched typically developing (TD) children. We found that, when completing the phonological task, the RI group exhibited higher local network efficiency and network modularity compared with the TD group. When switching between the phonological task and the short resting phase, the RI group showed difficulty with network reconfiguration, as reflected in fewer changes in the local efficiency and modularity properties and less rearrangement of the modular communities. These findings were reproducible after controlling for the effects of in-scanner accuracy, participant gender, and L1 reading performance. The results from the whole-brain network analyses were largely replicated in the task-activated network. These findings provide preliminary evidence supporting that RI in L2 is associated with not only abnormal functional network organization but also poor flexibility of the neural system in responding to changing cognitive demands. © 2016 John Wiley & Sons Ltd.

  18. HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions.

    Science.gov (United States)

    Wang, Xiao-Tao; Cui, Wang; Peng, Cheng

    2017-11-02

    A current question in the high-order organization of chromatin is whether topologically associating domains (TADs) are distinct from other hierarchical chromatin domains. However, due to the unclear TAD definition in tradition, the structural and functional uniqueness of TAD is not well studied. In this work, we refined TAD definition by further constraining TADs to the optimal separation on global intra-chromosomal interactions. Inspired by this constraint, we developed a novel method, called HiTAD, to detect hierarchical TADs from Hi-C chromatin interactions. HiTAD performs well in domain sensitivity, replicate reproducibility and inter cell-type conservation. With a novel domain-based alignment proposed by us, we defined several types of hierarchical TAD changes which were not systematically studied previously, and subsequently used them to reveal that TADs and sub-TADs differed statistically in correlating chromosomal compartment, replication timing and gene transcription. Finally, our work also has the implication that the refinement of TAD definition could be achieved by only utilizing chromatin interactions, at least in part. HiTAD is freely available online. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

  19. Density functional study of BiSbTeSe{sub 2} topological insulator thin films

    Energy Technology Data Exchange (ETDEWEB)

    Mohammadpourrad, Zahra; Abolhassani, Mohammadreza [Department of Physics, Science and Research Branch, Islamic Azad University, Tehran (Iran, Islamic Republic of)

    2017-08-15

    In this work, using density functional theory calculations, we have investigated the band topology of bulk BiSbTeSe{sub 2} and its thin film electronic properties in several thicknesses. It is one member of the quaternary compounds Bi{sub 2-x}Sb{sub x}Te{sub 3-y}Se{sub y} (BSTS) with the best intrinsic bulk insulating behavior. Based on our calculations we have found that a band inversion at Γ-point is induced when spin-orbit coupling is turned on, with an energy gap of about 0.318 eV. The film thickness has an effect on the surface states such that a gap opens at Dirac point in 6 quintuple-layers film and with decrease in thickness, the magnitude of the gap increases. The atomic contributions have been mapped out for the first few layers of thin films to demonstrate the surface states. The relative charge density has been calculated layer-wise and the penetration depth of the surface states into the bulk region is found to be about 2.5-3.5 quintuple layers, depending on the termination species of thin films. (copyright 2017 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  20. The H0 function, a new index for detecting structural/topological complexity information in undirected graphs

    Science.gov (United States)

    Buscema, Massimo; Asadi-Zeydabadi, Masoud; Lodwick, Weldon; Breda, Marco

    2016-04-01

    Significant applications such as the analysis of Alzheimer's disease differentiated from dementia, or in data mining of social media, or in extracting information of drug cartel structural composition, are often modeled as graphs. The structural or topological complexity or lack of it in a graph is quite often useful in understanding and more importantly, resolving the problem. We are proposing a new index we call the H0function to measure the structural/topological complexity of a graph. To do this, we introduce the concept of graph pruning and its associated algorithm that is used in the development of our measure. We illustrate the behavior of our measure, the H0 function, through different examples found in the appendix. These examples indicate that the H0 function contains information that is useful and important characteristics of a graph. Here, we restrict ourselves to undirected.

  1. Gene Duplication of the zebrafish kit ligand and partitioning of melanocyte development functions to kit ligand a.

    Directory of Open Access Journals (Sweden)

    Keith A Hultman

    2007-01-01

    Full Text Available The retention of particular genes after the whole genome duplication in zebrafish has given insights into how genes may evolve through partitioning of ancestral functions. We examine the partitioning of expression patterns and functions of two zebrafish kit ligands, kit ligand a (kitla and kit ligand b (kitlb, and discuss their possible coevolution with the duplicated zebrafish kit receptors (kita and kitb. In situ hybridizations show that kitla mRNA is expressed in the trunk adjacent to the notochord in the middle of each somite during stages of melanocyte migration and later expressed in the skin, when the receptor is required for melanocyte survival. kitla is also expressed in other regions complementary to kita receptor expression, including the pineal gland, tail bud, and ear. In contrast, kitlb mRNA is expressed in brain ventricles, ear, and cardinal vein plexus, in regions generally not complementary to either zebrafish kit receptor ortholog. However, like kitla, kitlb is expressed in the skin during stages consistent with melanocyte survival. Thus, it appears that kita and kitla have maintained congruent expression patterns, while kitb and kitlb have evolved divergent expression patterns. We demonstrate the interaction of kita and kitla by morpholino knockdown analysis. kitla morphants, but not kitlb morphants, phenocopy the null allele of kita, with defects for both melanocyte migration and survival. Furthermore, kitla morpholino, but not kitlb morpholino, interacts genetically with a sensitized allele of kita, confirming that kitla is the functional ligand to kita. Last, we examine kitla overexpression in embryos, which results in hyperpigmentation caused by an increase in the number and size of melanocytes. This hyperpigmentation is dependent on kita function. We conclude that following genome duplication, kita and kitla have maintained their receptor-ligand relationship, coevolved complementary expression patterns, and that

  2. A topological derivative method for topology optimization

    DEFF Research Database (Denmark)

    Norato, J.; Bendsøe, Martin P.; Haber, RB

    2007-01-01

    We propose a fictitious domain method for topology optimization in which a level set of the topological derivative field for the cost function identifies the boundary of the optimal design. We describe a fixed-point iteration scheme that implements this optimality criterion subject to a volumetric...

  3. Localization and diagonalization. A review of functional integral techniques for low-dimensional gauge theories and topological field theories

    International Nuclear Information System (INIS)

    Blau, M.; Thompson, G.

    1995-01-01

    We review localization techniques for functional integrals which have recently been used to perform calculations in and gain insight into the structure of certain topological field theories and low-dimensional gauge theories. These are the functional integral counterparts of the Mathai-Quillen formalism, the Duistermaat-Heckman theorem, and the Weyl integral formula respectively. In each case, we first introduce the necessary mathematical background (Euler classes of vector bundles, equivariant cohomology, topology of Lie groups), and describe the finite dimensional integration formulae. We then discuss some applications to path integrals and give an overview of the relevant literature. The applications we deal with include supersymmetric quantum mechanics, cohomological field theories, phase space path integrals, and two-dimensional Yang-Mills theory. (author). 83 refs

  4. Topology and prediction of RNA pseudoknots

    DEFF Research Database (Denmark)

    Reidys, Christian; Huang, Fenix; Andersen, Jørgen Ellegaard

    2011-01-01

    of irreducible components that are embeddable in the surfaces of fixed genus. We add to the conventional secondary structures four building blocks of genus one in order to construct certain structures of arbitrarily high genus. A corresponding unambiguous multiple context-free grammar provides an efficient...... dynamic programming approach for energy minimization, partition function and stochastic sampling. It admits a topology-dependent parametrization of pseudoknot penalties that increases the sensitivity and positive predictive value of predicted base pairs by 10–20% compared with earlier approaches. More...... general models based on building blocks of higher genus are also discussed....

  5. Metal-Silicate Partitioning of Bi, In, and Cd as a Function of Temperature and Melt Composition

    Science.gov (United States)

    Marin, Nicole; Righter, K.; Danielson, L.; Pando, K.; Lee, C.

    2013-01-01

    The origin of volatile elements in the Earth, Moon and Mars is not known; however, several theories have been proposed based on volatile elements such as In, As, Se, Te and Zn which are in lower concentration in the Earth, Moon, and Mars than in chondrites. Explanations for these low concentrations are based on two contrasting theories for the origin of Earth: equilibrium core formation versus late accretion. One idea is that the volatiles were added during growth of the planets and Moon, and some mobilized into the metallic core while others stayed in the mantle (e.g., [1]). The competing idea is that they were added to the mantles after core formation had completed (e.g., [2]). Testing these ideas involves quantitative modeling which can only be performed after data is obtained on the systematic metal-silicate partitioning behavior of volatile elements with temperature, pressure and melt composition. Until now, such data for Bi, In, and Cd has been lacking. After conducting a series of high pressure, high temperature experiments, the metal-silicate partition coefficients of Bi, In, and Cd as a function of temperature and melt composition can be used to evaluate potential conditions under which terrestrial planets differentiated into core and mantle, and how they acquired volatiles.

  6. Combinatorics of set partitions

    CERN Document Server

    Mansour, Toufik

    2012-01-01

    Focusing on a very active area of mathematical research in the last decade, Combinatorics of Set Partitions presents methods used in the combinatorics of pattern avoidance and pattern enumeration in set partitions. Designed for students and researchers in discrete mathematics, the book is a one-stop reference on the results and research activities of set partitions from 1500 A.D. to today. Each chapter gives historical perspectives and contrasts different approaches, including generating functions, kernel method, block decomposition method, generating tree, and Wilf equivalences. Methods and d

  7. The Ascoli property for function spaces and the weak topology of Banach and Fréchet spaces

    Czech Academy of Sciences Publication Activity Database

    Gabriyelyan, S.; Kąkol, Jerzy; Plebanek, G.

    2016-01-01

    Roč. 233, č. 2 (2016), s. 119-139 ISSN 0039-3223 R&D Projects: GA ČR GF16-34860L Institutional support: RVO:67985840 Keywords : locally convex-space Subject RIV: BA - General Mathematics Impact factor: 0.535, year: 2016 https://www.impan.pl/pl/wydawnictwa/czasopisma-i-serie-wydawnicze/studia- mathematica /all/233/2/91577/the-ascoli-property-for-function-spaces-and-the-weak-topology-of-banach-and-frechet-spaces

  8. Partitioning the regional and local drivers of phylogenetic and functional diversity along temperate elevational gradients on an East Asian peninsula.

    Science.gov (United States)

    Chun, Jung-Hwa; Lee, Chang-Bae

    2018-02-12

    Species-centric approaches to biodiversity in ecological research are limited in their ability to reflect the evolutionary history and functional diversity of community assembly. Recently, the introduction of alternative facets of biodiversity, such as phylogenetic and functional diversity, has shed light on this problem and improved our understanding of the processes underlying biodiversity patterns. Here, we investigated the phylogenetic and functional diversity patterns of α, β and γ components in woody plant assemblages along regional and local elevational gradients in South Korea. Although the patterns of phylogenetic and functional diversity varied along regional and local elevational transects, the main drivers were partitioned into two categories: regional area or climate for phylogenetic diversity, depending on whether the transect was at a regional or local scale; and habitat heterogeneity for functional diversity, which was derived in elevational bands. Moreover, environmental distance was more important than was geographic distance for phylogenetic and functional β diversity between paired elevational bands. These results support the hypothesis that niche-based deterministic processes such as environmental filtering and competitive exclusion are fundamental in structuring woody plant assemblages along temperate elevational gradients regardless of scale (regional vs. local) in our study areas.

  9. On Complex Zeros of the q-Potts Partition Function for a Self-dual Family of Graphs

    Science.gov (United States)

    Billiot, J.-M.; Corset, F.; Fontenas, E.

    2010-06-01

    This paper deals with the location of the complex zeros of q-Potts partition function for a class of self-dual graphs. For this class of graphs, as the form of the eigenvalues is known, the regions of the complex plane can be focused on the sets where there is only one dominant eigenvalue in particular containing the positive half plane. Thus, in these regions, the analyticity of the free energy per site can be derived easily. Next, some examples of graphs with their Tutte polynomial having few eigenvalues are given. The case of the cycle with an edge having a high order of multiplicity is presented in detail. In particular, we show that the well known conjecture of Chen et al. is false in the finite case. Furthermore we obtain a sequence of self-dual graphs for which the unit circle does not belong to the accumulation sets of the zeros.

  10. On the Axiomatization of Mathematical Understanding: Continuous Functions in the Transition to Topology

    Science.gov (United States)

    Cheshire, Daniel C.

    2017-01-01

    The introduction to general topology represents a challenging transition for students of advanced mathematics. It requires the generalization of their previous understanding of ideas from fields like geometry, linear algebra, and real or complex analysis to fit within a more abstract conceptual system. Students must adopt a new lexicon of…

  11. Pairing States of Spin-3/2 Fermions: Symmetry-Enforced Topological Gap Functions

    Science.gov (United States)

    Venderbos, Jörn W. F.; Savary, Lucile; Ruhman, Jonathan; Lee, Patrick A.; Fu, Liang

    2018-01-01

    We study the topological properties of superconductors with paired j =3/2 quasiparticles. Higher spin Fermi surfaces can arise, for instance, in strongly spin-orbit coupled band-inverted semimetals. Examples include the Bi-based half-Heusler materials, which have recently been established as low-temperature and low-carrier density superconductors. Motivated by this experimental observation, we obtain a comprehensive symmetry-based classification of topological pairing states in systems with higher angular momentum Cooper pairing. Our study consists of two main parts. First, we develop the phenomenological theory of multicomponent (i.e., higher angular momentum) pairing by classifying the stationary points of the free energy within a Ginzburg-Landau framework. Based on the symmetry classification of stationary pairing states, we then derive the symmetry-imposed constraints on their gap structures. We find that, depending on the symmetry quantum numbers of the Cooper pairs, different types of topological pairing states can occur: fully gapped topological superconductors in class DIII, Dirac superconductors, and superconductors hosting Majorana fermions. Notably, we find a series of nematic fully gapped topological superconductors, as well as double- and triple-Dirac superconductors, with quadratic and cubic dispersion, respectively. Our approach, applied here to the case of j =3/2 Cooper pairing, is rooted in the symmetry properties of pairing states, and can therefore also be applied to other systems with higher angular momentum and high-spin pairing. We conclude by relating our results to experimentally accessible signatures in thermodynamic and dynamic probes.

  12. The topological B model as a twisted spinning particle

    International Nuclear Information System (INIS)

    Marcus, Neil; Yankielowicz, Shimon

    1994-01-01

    The B-twisted topological sigma model coupled to topological gravity is supposed to be described by an ordinary field theory: a type of holomorphic Chern-Simons theory for the open string, and the Kodaira-Spencer theory for the closed string. We show that the B model can be represented as a particle theory, obtained by reducing the sigma model to one dimension, and replacing the coupling to topological gravity by a coupling to a twisted one-dimensional supergravity. The particle can be defined on any Kaehler manifold - it does not require the Calabi-Yau condition - so it may provide a more generalized setting for the B model than the topological sigma model.The one-loop partition function of the particle can be written in terms of the Ray-Singer torsion of the manifold, and agrees with that of the original B model. After showing how to deform the Kaehler and complex structures in the particle, we prove the independence of this partition function on the Kaehler structure, and investigate the origin of the holomorphic anomaly. To define other amplitudes, one needs to introduce interactions into the particle. The particle will then define a field theory, which may or may not be the Chern-Simons or Kodaira-Spencer theories. ((orig.))

  13. Non-perturbative effects and the refined topological string

    Energy Technology Data Exchange (ETDEWEB)

    Hatsuda, Yasuyuki [DESY Hamburg (Germany). Theory Group; Tokyo Institute of Technology (Japan). Dept. of Physics; Marino, Marcos [Geneve Univ. (Switzerland). Dept. de Physique Theorique et Section de Mathematiques; Moriyama, Sanefumi [Nagoya Univ. (Japan). Kobayashi Maskawa Inst.; Nagoya Univ. (Japan). Graduate School of Mathematics; Okuyama, Kazumi [Shinshu Univ., Matsumoto, Nagano (Japan). Dept. of Physics

    2013-06-15

    The partition function of ABJM theory on the three-sphere has non-perturbative corrections due to membrane instantons in the M-theory dual. We show that the full series of membrane instanton corrections is completely determined by the refined topological string on the Calabi-Yau manifold known as local P{sup 1} x P{sup 1}, in the Nekrasov-Shatashvili limit. Our result can be interpreted as a first-principles derivation of the full series of non-perturbative effects for the closed topological string on this Calabi-Yau background. Based on this, we make a proposal for the non-perturbative free energy of topological strings on general, local Calabi-Yau manifolds.

  14. Non-perturbative effects and the refined topological string

    International Nuclear Information System (INIS)

    Hatsuda, Yasuyuki; Tokyo Institute of Technology; Marino, Marcos; Moriyama, Sanefumi; Nagoya Univ.; Okuyama, Kazumi

    2013-06-01

    The partition function of ABJM theory on the three-sphere has non-perturbative corrections due to membrane instantons in the M-theory dual. We show that the full series of membrane instanton corrections is completely determined by the refined topological string on the Calabi-Yau manifold known as local P 1 x P 1 , in the Nekrasov-Shatashvili limit. Our result can be interpreted as a first-principles derivation of the full series of non-perturbative effects for the closed topological string on this Calabi-Yau background. Based on this, we make a proposal for the non-perturbative free energy of topological strings on general, local Calabi-Yau manifolds.

  15. Exact partition functions for the Ω-deformed N=2{sup ∗}SU(2) gauge theory

    Energy Technology Data Exchange (ETDEWEB)

    Beccaria, Matteo; Macorini, Guido [Dipartimento di Matematica e Fisica “Ennio De Giorgi”, Università del Salento,Via Arnesano, 73100 Lecce (Italy); INFN,Via Arnesano, 73100 Lecce (Italy)

    2016-07-12

    We study the low energy effective action of the Ω-deformed N=2{sup ∗}SU(2) gauge theory. It depends on the deformation parameters ϵ{sub 1},ϵ{sub 2}, the scalar field expectation value a, and the hypermultiplet mass m. We explore the plane ((m/(ϵ{sub 1})),((ϵ{sub 2})/(ϵ{sub 1}))) looking for special features in the multi-instanton contributions to the prepotential, motivated by what happens in the Nekrasov-Shatashvili limit ϵ{sub 2}→0. We propose a simple condition on the structure of poles of the k-instanton prepotential and show that it is admissible at a finite set of points in the above plane. At these special points, the prepotential has poles at fixed positions independent on the instanton number. Besides and remarkably, both the instanton partition function and the full prepotential, including the perturbative contribution, may be given in closed form as functions of the scalar expectation value a and the modular parameter q appearing in special combinations of Eisenstein series and Dedekind η function. As a byproduct, the modular anomaly equation can be tested at all orders at these points. We discuss these special features from the point of view of the AGT correspondence and provide explicit toroidal 1-blocks in non-trivial closed form. The full list of solutions with 1, 2, 3, and 4 poles is determined and described in details.

  16. Dimensional reduction and topological invariants of symmetry-protected topological phases

    Science.gov (United States)

    Tantivasadakarn, Nathanan

    2017-11-01

    We review the dimensional reduction procedure in the group cohomology classification of bosonic SPT phases with finite Abelian unitary symmetry group. We then extend this to include general reductions of arbitrary dimensions and also extend the procedure to fermionic SPT phases described by the Gu-Wen supercohomology model. We then show that we can define topological invariants as partition functions on certain closed orientable/spin manifolds equipped with a flat connection. The invariants are able to distinguish all phases described within the respective models. Finally, we establish a connection to invariants obtained from braiding statistics of the corresponding gauged theories.

  17. Graph topologies on closed multifunctions

    Directory of Open Access Journals (Sweden)

    Giuseppe Di Maio

    2003-10-01

    Full Text Available In this paper we study function space topologies on closed multifunctions, i.e. closed relations on X x Y using various hypertopologies. The hypertopologies are in essence, graph topologies i.e topologies on functions considered as graphs which are subsets of X x Y . We also study several topologies, including one that is derived from the Attouch-Wets filter on the range. We state embedding theorems which enable us to generalize and prove some recent results in the literature with the use of known results in the hyperspace of the range space and in the function space topologies of ordinary functions.

  18. Countable Fuzzy Topological Space and Countable Fuzzy Topological Vector Space

    Directory of Open Access Journals (Sweden)

    Apu Kumar Saha

    2015-06-01

    Full Text Available This paper deals with countable fuzzy topological spaces, a generalization of the notion of fuzzy topological spaces. A collection of fuzzy sets F on a universe X forms a countable fuzzy topology if in the definition of a fuzzy topology, the condition of arbitrary supremum is relaxed to countable supremum. In this generalized fuzzy structure, the continuity of fuzzy functions and some other related properties are studied. Also the class of countable fuzzy topological vector spaces as a generalization of the class of fuzzy topological vector spaces has been introduced and investigated.

  19. Gentile statistics and restricted partitions

    Indian Academy of Sciences (India)

    The partition function of Gentile statistics also has the property that it nicely interpolates between the ... We now construct the partition function for such a system which also incorporates the property of interpolation ... As in [4], we however keep s arbitrary even though for s > 2 there are no quadratic. Hamiltonian systems.

  20. Human Dopamine Receptors Interaction Network (DRIN): a systems biology perspective on topology, stability and functionality of the network.

    Science.gov (United States)

    Podder, Avijit; Jatana, Nidhi; Latha, N

    2014-09-21

    Dopamine receptors (DR) are one of the major neurotransmitter receptors present in human brain. Malfunctioning of these receptors is well established to trigger many neurological and psychiatric disorders. Taking into consideration that proteins function collectively in a network for most of the biological processes, the present study is aimed to depict the interactions between all dopamine receptors following a systems biology approach. To capture comprehensive interactions of candidate proteins associated with human dopamine receptors, we performed a protein-protein interaction network (PPIN) analysis of all five receptors and their protein partners by mapping them into human interactome and constructed a human Dopamine Receptors Interaction Network (DRIN). We explored the topology of dopamine receptors as molecular network, revealing their characteristics and the role of central network elements. More to the point, a sub-network analysis was done to determine major functional clusters in human DRIN that govern key neurological pathways. Besides, interacting proteins in a pathway were characterized and prioritized based on their affinity for utmost drug molecules. The vulnerability of different networks to the dysfunction of diverse combination of components was estimated under random and direct attack scenarios. To the best of our knowledge, the current study is unique to put all five dopamine receptors together in a common interaction network and to understand the functionality of interacting proteins collectively. Our study pinpointed distinctive topological and functional properties of human dopamine receptors that have helped in identifying potential therapeutic drug targets in the dopamine interaction network. Copyright © 2014 Elsevier Ltd. All rights reserved.

  1. Distinct functional constraints partition sequence conservation in a cis-regulatory element.

    Directory of Open Access Journals (Sweden)

    Antoine Barrière

    2011-06-01

    Full Text Available Different functional constraints contribute to different evolutionary rates across genomes. To understand why some sequences evolve faster than others in a single cis-regulatory locus, we investigated function and evolutionary dynamics of the promoter of the Caenorhabditis elegans unc-47 gene. We found that this promoter consists of two distinct domains. The proximal promoter is conserved and is largely sufficient to direct appropriate spatial expression. The distal promoter displays little if any conservation between several closely related nematodes. Despite this divergence, sequences from all species confer robustness of expression, arguing that this function does not require substantial sequence conservation. We showed that even unrelated sequences have the ability to promote robust expression. A prominent feature shared by all of these robustness-promoting sequences is an AT-enriched nucleotide composition consistent with nucleosome depletion. Because general sequence composition can be maintained despite sequence turnover, our results explain how different functional constraints can lead to vastly disparate rates of sequence divergence within a promoter.

  2. Spin dynamics simulations of topological magnon insulators: From transverse current correlation functions to the family of magnon Hall effects

    Science.gov (United States)

    Mook, Alexander; Henk, Jürgen; Mertig, Ingrid

    2016-11-01

    We demonstrate theoretically that atomistic spin dynamics simulations of topological magnon insulators (TMIs) provide access to the magnon-mediated transport of both spin and heat. The TMIs, modeled by kagome ferromagnets with Dzyaloshinskii-Moriya interaction, exhibit nonzero transverse-current correlation functions from which conductivities are derived for the entire family of magnon Hall effects. Both longitudinal and transverse conductivities are studied in dependence on temperature and on an external magnetic field. A comparison between theoretical and experimental results for Cu(1,3-benzenedicarboxylate), a recently discovered TMI, is drawn.

  3. Cadmium induces changes in sucrose partitioning, invertase activities, and membrane functionality in roots of Rangpur lime (Citrus limonia L. Osbeck).

    Science.gov (United States)

    Podazza, G; Rosa, M; González, J A; Hilal, M; Prado, F E

    2006-09-01

    Cadmium (Cd) uptake effects on sucrose content, invertase activities, and plasma membrane functionality were investigated in Rangpur lime roots ( CITRUS LIMONIA L. Osbeck). Cadmium accumulation was significant in roots but not in shoots and leaves. Cadmium produced significant reduction in roots DW and increment in WC. Leaves and shoots did not show significant differences on both parameters. Sucrose content was higher in control roots than in Cd-exposed ones. Apoplastic sucrose content was much higher in Cd-exposed roots than in control ones. Cd-exposed roots showed a significant decrease in both cell wall-bound and cytoplasmic (neutral) invertase activities; while the vacuolar isoform did not show any change. Alterations in lipid composition and membrane fluidity of Cd-exposed roots were also observed. In Cd-exposed roots phospholipid and glycolipid contents decreased about 50 %, while sterols content was reduced about 22 %. Proton extrusion was inhibited by Cd. Lipid peroxidation and proton extrusion inhibition were also detected by histochemical analysis. This work's findings demonstrate that Cd affects sucrose partitioning and invertase activities in apoplastic and symplastic regions in Rangpur lime roots as well as the plasma membrane functionality and H (+)-ATPase activity.

  4. A new strategy for exploring the hierarchical structure of cancers by adaptively partitioning functional modules from gene expression network.

    Science.gov (United States)

    Xu, Junmei; Jing, Runyu; Liu, Yuan; Dong, Yongcheng; Wen, Zhining; Li, Menglong

    2016-06-28

    The interactions among the genes within a disease are helpful for better understanding the hierarchical structure of the complex biological system of it. Most of the current methodologies need the information of known interactions between genes or proteins to create the network connections. However, these methods meet the limitations in clinical cancer researches because different cancers not only share the common interactions among the genes but also own their specific interactions distinguished from each other. Moreover, it is still difficult to decide the boundaries of the sub-networks. Therefore, we proposed a strategy to construct a gene network by using the sparse inverse covariance matrix of gene expression data, and divide it into a series of functional modules by an adaptive partition algorithm. The strategy was validated by using the microarray data of three cancers and the RNA-sequencing data of glioblastoma. The different modules in the network exhibited specific functions in cancers progression. Moreover, based on the gene expression profiles in the modules, the risk of death was well predicted in the clustering analysis and the binary classification, indicating that our strategy can be benefit for investigating the cancer mechanisms and promoting the clinical applications of network-based methodologies in cancer researches.

  5. MSTor: A program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity

    Science.gov (United States)

    Zheng, Jingjing; Mielke, Steven L.; Clarkson, Kenneth L.; Truhlar, Donald G.

    2012-08-01

    We present a Fortran program package, MSTor, which calculates partition functions and thermodynamic functions of complex molecules involving multiple torsional motions by the recently proposed MS-T method. This method interpolates between the local harmonic approximation in the low-temperature limit, and the limit of free internal rotation of all torsions at high temperature. The program can also carry out calculations in the multiple-structure local harmonic approximation. The program package also includes six utility codes that can be used as stand-alone programs to calculate reduced moment of inertia matrices by the method of Kilpatrick and Pitzer, to generate conformational structures, to calculate, either analytically or by Monte Carlo sampling, volumes for torsional subdomains defined by Voronoi tessellation of the conformational subspace, to generate template input files, and to calculate one-dimensional torsional partition functions using the torsional eigenvalue summation method. Catalogue identifier: AEMF_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEMF_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 77 434 No. of bytes in distributed program, including test data, etc.: 3 264 737 Distribution format: tar.gz Programming language: Fortran 90, C, and Perl Computer: Itasca (HP Linux cluster, each node has two-socket, quad-core 2.8 GHz Intel Xeon X5560 “Nehalem EP” processors), Calhoun (SGI Altix XE 1300 cluster, each node containing two quad-core 2.66 GHz Intel Xeon “Clovertown”-class processors sharing 16 GB of main memory), Koronis (Altix UV 1000 server with 190 6-core Intel Xeon X7542 “Westmere” processors at 2.66 GHz), Elmo (Sun Fire X4600 Linux cluster with AMD Opteron cores), and Mac Pro (two 2.8 GHz Quad-core Intel Xeon

  6. Monolayer group-III monochalcogenides by oxygen functionalization: a promising class of two-dimensional topological insulators

    Science.gov (United States)

    Zhou, Si; Liu, Cheng-Cheng; Zhao, Jijun; Yao, Yugui

    2018-03-01

    Monolayer group-III monochalcogenides (MX, M = Ga, In; X = S, Se, Te), an emerging category of two-dimensional (2D) semiconductors, hold great promise for electronics, optoelectronics and catalysts. By first-principles calculations, we show that the phonon dispersion and Raman spectra, as well as the electronic and topological properties of monolayer MX can be tuned by oxygen functionalization. Chemisorption of oxygen atoms on one side or both sides of the MX sheet narrows or even closes the band gap, enlarges work function, and significantly reduces the carrier effective mass. More excitingly, InS, InSe, and InTe monolayers with double-side oxygen functionalization are 2D topological insulators with sizeable bulk gap up to 0.21 eV. Their low-energy bands near the Fermi level are dominated by the px and py orbitals of atoms, allowing band engineering via in-plane strains. Our studies provide viable strategy for realizing quantum spin Hall effect in monolayer group-III monochalcogenides at room temperature, and utilizing these novel 2D materials for high-speed and dissipationless transport devices.

  7. Min-max Extrapolation Scheme for Fast Estimation of 3D Potts Field Partition Functions. Application to the Joint Detection-Estimation of Brain Activity in fMRI

    International Nuclear Information System (INIS)

    Risser, L.; Vincent, T.; Ciuciu, P.; Risser, L.; Idier, J.; Risser, L.; Forbes, F.

    2011-01-01

    In this paper, we propose a fast numerical scheme to estimate Partition Functions (PF) of symmetric Potts fields. Our strategy is first validated on 2D two-color Potts fields and then on 3D two- and three-color Potts fields. It is then applied to the joint detection-estimation of brain activity from functional Magnetic Resonance Imaging (fMRI) data, where the goal is to automatically recover activated, deactivated and inactivated brain regions and to estimate region dependent hemodynamic filters. For any brain region, a specific 3D Potts field indeed embodies the spatial correlation over the hidden states of the voxels by modeling whether they are activated, deactivated or inactive. To make spatial regularization adaptive, the PFs of the Potts fields over all brain regions are computed prior to the brain activity estimation. Our approach is first based upon a classical path-sampling method to approximate a small subset of reference PFs corresponding to pre-specified regions. Then, we propose an extrapolation method that allows us to approximate the PFs associated to the Potts fields defined over the remaining brain regions. In comparison with preexisting methods either based on a path sampling strategy or mean-field approximations, our contribution strongly alleviates the computational cost and makes spatially adaptive regularization of whole brain fMRI datasets feasible. It is also robust against grid inhomogeneities and efficient irrespective of the topological configurations of the brain regions. (authors)

  8. Temporal energy partitions of Florida extreme sea level events as a function of Atlantic multidecadal oscillation

    Directory of Open Access Journals (Sweden)

    J. Park

    2010-06-01

    Full Text Available An energy-conservative metric based on the discrete wavelet transform is applied to assess the relative energy distribution of extreme sea level events across different temporal scales. The metric is applied to coastal events at Key West and Pensacola Florida as a function of two Atlantic Multidecadal Oscillation (AMO regimes. Under AMO warm conditions there is a small but significant redistribution of event energy from nearly static into more dynamic (shorter duration timescales at Key West, while at Pensacola the AMO-dependent changes in temporal event behaviour are less pronounced. Extreme events with increased temporal dynamics might be consistent with an increase in total energy of event forcings which may be a reflection of more energetic storm events during AMO warm phases. As dynamical models mature to the point of providing regional climate index predictability, coastal planners may be able to consider such temporal change metrics in planning scenarios.

  9. Topological organization of functional brain networks in healthy children: differences in relation to age, sex, and intelligence.

    Directory of Open Access Journals (Sweden)

    Kai Wu

    Full Text Available Recent studies have demonstrated developmental changes of functional brain networks derived from functional connectivity using graph theoretical analysis, which has been rapidly translated to studies of brain network organization. However, little is known about sex- and IQ-related differences in the topological organization of functional brain networks during development. In this study, resting-state fMRI (rs-fMRI was used to map the functional brain networks in 51 healthy children. We then investigated the effects of age, sex, and IQ on economic small-world properties and regional nodal properties of the functional brain networks. At a global level of whole networks, we found significant age-related increases in the small-worldness and local efficiency, significant higher values of the global efficiency in boys compared with girls, and no significant IQ-related difference. Age-related increases in the regional nodal properties were found predominately in the frontal brain regions, whereas the parietal, temporal, and occipital brain regions showed age-related decreases. Significant sex-related differences in the regional nodal properties were found in various brain regions, primarily related to the default mode, language, and vision systems. Positive correlations between IQ and the regional nodal properties were found in several brain regions related to the attention system, whereas negative correlations were found in various brain regions primarily involved in the default mode, emotion, and language systems. Together, our findings of the network topology of the functional brain networks in healthy children and its relationship with age, sex, and IQ bring new insights into the understanding of brain maturation and cognitive development during childhood and adolescence.

  10. Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica

    Directory of Open Access Journals (Sweden)

    Tom O Delmont

    2015-10-01

    Full Text Available Antarctica polynyas support intense phytoplankton blooms, impacting their environment by a substantial depletion of inorganic carbon and nutrients. These blooms are dominated by the colony-forming haptophyte Phaeocystis antarctica and they are accompanied by a distinct bacterial population. Yet, the ecological role these bacteria may play in P. antarctica blooms awaits elucidation of their functional gene pool and of the geochemical activities they support. Here, we report on a metagenome (῀160 million reads analysis of the microbial community associated with a P. antarctica bloom event in the Amundsen Sea polynya (West Antarctica. Genomes of the most abundant Bacteroidetes and Proteobacteria populations have been reconstructed and a network analysis indicates a strong functional partitioning of these bacterial taxa. Three of them (SAR92, and members of the Oceanospirillaceae and Cryomorphaceae are found in close association with P. antarctica colonies. Distinct features of their carbohydrate, nitrogen, sulfur and iron metabolisms may serve to support mutualistic relationships with P. antarctica. The SAR92 genome indicates a specialization in the degradation of fatty acids and dimethylsulfoniopropionate (compounds released by P. antarctica into dimethyl sulfide, an aerosol precursor. The Oceanospirillaceae genome carries genes that may enhance algal physiology (cobalamin synthesis. Finally, the Cryomorphaceae genome is enriched in genes that function in cell or colony invasion. A novel pico-eukaryote, Micromonas related genome (19.6 Mb, ~94% completion was also recovered. It contains the gene for an anti-freeze protein, which is lacking in Micromonas at lower latitudes. These draft genomes are representative for abundant microbial taxa across the Southern Ocean surface.

  11. Three 3D metal coordination polymers based on triazol-functionalized rigid ligand: Synthesis, topological structure and properties

    Science.gov (United States)

    Meng, Lingkun; Liu, Kang; Liang, Chen; Guo, Xiaolei; Han, Xu; Ren, Siyuan; Ma, Dingxuan; Li, Guanghua; Shi, Zhan; Feng, Shouhua

    2018-02-01

    By using a triazol-functionalized tricarboxylate, three novel metal coordination polymers, namely, [Zn2L(OH)]·0.5H2O (1), [Co2L(OH)(H2O)]·5.5H2O (2), [Cu2(HL)] (3) L = [5-(3-(4-carboxyphenyl)-5-methyl-4H-1,2,4-triazol-4-yl)isophthalate] were synthesized under hydrothermal reactions. All the compounds were characterized by element analysis, IR spectroscopy, thermogravimetric analysis, power X-ray diffrcation and single-crystal X-ray diffrcation. Structural analysis reveals that compounds 1 and 2 have 3D networks with flu topologies where rigid trizaol-functionalized ligands as 4-connected nodes and Zn4(COO)6 or Co4(COO)6 clusters serves as 8-connected secondary building units. Compound 3 has 3D network with pcu topology where Cu4(COO)4 clusters serve as 6-connected secondary building units. Gas adsorption studies reveal that desolvated compoud 1 exhibits high H2 absorption capacity at 77 K and highly selective separation abilities of CO2 and C3H8 over CH4 at room temperature. The results suggest that 1 has potential application in gas storage and separation. In addition, the magnetic properties of compound 2 were also investigated.

  12. Quantum Entanglement and the Topological Order of Fractional Hall States

    Science.gov (United States)

    Rezayi, Edward

    2015-03-01

    Fractional quantum Hall states or, more generally, topological phases of matter defy Landau classification based on order parameter and broken symmetry. Instead they have been characterized by their topological order. Quantum information concepts, such as quantum entanglement, appear to provide the most efficient method of detecting topological order solely from the knowledge of the ground state wave function. This talk will focus on real-space bi-partitioning of quantum Hall states and will present both exact diagonalization and quantum Monte Carlo studies of topological entanglement entropy in various geometries. Results on the torus for non-contractible cuts are quite rich and, through the use of minimum entropy states, yield the modular S-matrix and hence uniquely determine the topological order, as shown in recent literature. Concrete examples of minimum entropy states from known quantum Hall wave functions and their corresponding quantum numbers, used in exact diagonalizations, will be given. In collaboration with Clare Abreu and Raul Herrera. Supported by DOE Grant DE-SC0002140.

  13. Open string topological amplitudes and gaugino masses

    International Nuclear Information System (INIS)

    Antoniadis, I.; Narain, K.S.; Taylor, T.R.

    2005-09-01

    We discuss the moduli-dependent couplings of the higher derivative F-terms (TrW 2 ) h-1 , where W is the gauge N =1 chiral superfield. They are determined by the genus zero topological partition function F (0,h) , on a world-sheet with h boundaries. By string duality, these terms are also related to heterotic topological amplitudes studied in the past, with the topological twist applied only in the left-moving supersymmetric sector of the internal N =(2,0) superconformal field theory. The holomorphic anomaly of these couplings relates them to terms of the form Π n (TrW 2 ) h-2 , where Π's represent chiral projections of non-holomorphic functions of chiral superfields. An important property of these couplings is that they violate R-symmetry for h ≥ 3. As a result, once supersymmetry is broken by D-term expectation values, (TrW 2 ) 2 generates gaugino masses that can be hierarchically smaller than the scalar masses, behaving as m 1/2 ∼ m 0 4 in string units. Similarly, ΠTrW 2 generates Dirac masses for non-chiral brane fermions, of the same order of magnitude. This mechanism can be used for instance to obtain fermion masses at the TeV scale for scalar masses as high as m 0 ∼ O (10 13 ) GeV. We present explicit examples in toroidal string compactifications with intersecting D-branes. (author)

  14. Large N topologically twisted index: necklace quivers, dualities, and Sasaki-Einstein spaces

    Science.gov (United States)

    Hosseini, Seyed Morteza; Mekareeya, Noppadol

    2016-08-01

    In this paper, we calculate the topological free energy for a number of {N} ≥ 2 Yang-Mills-Chern-Simons-matter theories at large N and fixed Chern-Simons levels. The topological free energy is defined as the logarithm of the partition function of the theory on S 2 × S 1 with a topological A-twist along S 2 and can be reduced to a matrix integral by exploiting the localization technique. The theories of our interest are dual to a variety of Calabi-Yau four-fold singularities, including a product of two asymptotically locally Euclidean singularities and the cone over various well-known homogeneous Sasaki-Einstein seven-manifolds, N 0,1,0, V 5,2, and Q 1,1,1. We check that the large N topological free energy can be matched for theories which are related by dualities, including mirror symmetry and SL(2,{Z}) duality.

  15. Plane partition vesicles

    International Nuclear Information System (INIS)

    Rensburg, E J Janse van; Ma, J

    2006-01-01

    We examine partitions and their natural three-dimensional generalizations, plane partitions, as models of vesicles undergoing an inflation-deflation transition. The phase diagrams of these models include a critical point corresponding to an inflation-deflation transition, and exhibits multicritical scaling in the vicinity of a multicritical point located elsewhere on the critical curve. We determine the locations of the multicritical points by analysing the generating functions using analytic and numerical means. In addition, we determine the numerical values of the multicritical scaling exponents associated with the multicritical scaling regimes in these models

  16. Topological insulators and topological superconductors

    CERN Document Server

    Bernevig, Andrei B

    2013-01-01

    This graduate-level textbook is the first pedagogical synthesis of the field of topological insulators and superconductors, one of the most exciting areas of research in condensed matter physics. Presenting the latest developments, while providing all the calculations necessary for a self-contained and complete description of the discipline, it is ideal for graduate students and researchers preparing to work in this area, and it will be an essential reference both within and outside the classroom. The book begins with simple concepts such as Berry phases, Dirac fermions, Hall conductance and its link to topology, and the Hofstadter problem of lattice electrons in a magnetic field. It moves on to explain topological phases of matter such as Chern insulators, two- and three-dimensional topological insulators, and Majorana p-wave wires. Additionally, the book covers zero modes on vortices in topological superconductors, time-reversal topological superconductors, and topological responses/field theory and topolo...

  17. Topological Methods for Visualization

    Energy Technology Data Exchange (ETDEWEB)

    Berres, Anne Sabine [Los Alamos National Lab. (LANL), Los Alamos, NM (United Stat

    2016-04-07

    This slide presentation describes basic topological concepts, including topological spaces, homeomorphisms, homotopy, betti numbers. Scalar field topology explores finding topological features and scalar field visualization, and vector field topology explores finding topological features and vector field visualization.

  18. A Banach-Dieudonné theorem for the space of bounded continuous functions on a separable metric space with the strict topology

    NARCIS (Netherlands)

    Kraaij, R.C.

    2016-01-01

    Let X be a separable metric space and let β be the strict topology on the space of bounded continuous functions on X, which has the space of τ-additive Borel measures as a continuous dual space. We prove a Banach-Dieudonné type result for the space of bounded continuous functions equipped with β:

  19. Hamiltonian formalism of Whitham-type hierarchies and topological Landau-Ginsburg models

    International Nuclear Information System (INIS)

    Dubrovin, B.A.

    1992-01-01

    We show that the bi-hamiltonian structure of the averaged Gelfand-Dikii hierarchy is involved in the Landau-Ginsburg topological models (for A n -Series): The Casimirs for the first P.B. give the correct coupling parameters for the perturbed topological minimal model; the correspondence {coupling parameters}→{primary fields} is determined by the second P.B. The partition function (at the tree level) and the chiral algebra for LG minimal models are calculated for any genus g. (orig.)

  20. Topology on the spectrum of the algebra of entire symmetric functions of bounded type on the complex $L_\\infty$

    Directory of Open Access Journals (Sweden)

    T. V. Vasylyshyn

    2017-07-01

    Full Text Available It is known that the so-called elementary symmetric polynomials $R_n(x = \\int_{[0,1]}(x(t^n\\,dt$ form an algebraic basis in the algebra of all symmetric continuous polynomials on the complex Banach space $L_\\infty,$ which is dense in the Fr\\'{e}chet algebra $H_{bs}(L_\\infty$ of all entire symmetric functions of bounded  type on $L_\\infty.$ Consequently, every continuous homomorphism $\\varphi: H_{bs}(L_\\infty \\to \\mathbb{C}$ is uniquely determined by the sequence $\\{\\varphi(R_n\\}_{n=1}^\\infty.$ By the continuity of the homomorphism $\\varphi,$ the sequence $\\{\\sqrt[n]{|\\varphi(R_n|}\\}_{n=1}^\\infty$ is bounded. On the other hand, for every sequence $\\{\\xi_n\\}_{n=1}^\\infty \\subset \\mathbb{C},$ such that the sequence $\\{\\sqrt[n]{|\\xi_n|}\\}_{n=1}^\\infty$ is bounded,  there exists  $x_\\xi \\in L_\\infty$ such that $R_n(x_\\xi = \\xi_n$ for every $n \\in \\mathbb{N}.$ Therefore, for the point-evaluation functional $\\delta_{x_\\xi}$ we have $\\delta_{x_\\xi}(R_n = \\xi_n$ for every $n \\in \\mathbb{N}.$ Thus, every continuous complex-valued homomorphism of $H_{bs}(L_\\infty$ is a point-evaluation functional at some point of $L_\\infty.$ Note that such a point is not unique. We can consider an equivalence relation on $L_\\infty,$ defined by $x\\sim y \\Leftrightarrow \\delta_x = \\delta_y.$ The spectrum (the set of all continuous complex-valued homomorphisms $M_{bs}$ of the algebra $H_{bs}(L_\\infty$ is one-to-one with the quotient set $L_\\infty/_\\sim.$ Consequently, $M_{bs}$ can be endowed with the quotient topology. On the other hand, it is naturally to identify $M_{bs}$ with the set of all sequences $\\{\\xi_n\\}_{n=1}^\\infty \\subset \\mathbb{C}$ such that the sequence $\\{\\sqrt[n]{|\\xi_n|}\\}_{n=1}^\\infty$ is bounded.We show that the quotient topology is Hausdorffand that $M_{bs}$ with the operation of coordinate-wise addition of sequences forms an abelian topological group.

  1. Spectrum of Singly Charged Uranium (U II : Theoretical Interpretation of Energy Levels, Partition Function and Classified Ultraviolet Lines

    Directory of Open Access Journals (Sweden)

    Ali Meftah

    2017-06-01

    Full Text Available In an attempt to improve U II analysis, the lowest configurations of both parities have been interpreted by means of the Racah-Slater parametric method, using Cowan codes. In the odd parity, including the ground state, 253 levels of the interacting configurations 5 f 3 7 s 2 + 5 f 3 6 d 7 s + 5 f 3 6 d 2 + 5 f 4 7 p + 5 f 5 are interpreted by 24 free parameters and 64 constrained ones, with a root mean square (rms deviation of 60 cm − 1 . In the even parity, the four known configurations 5 f 4 7 s , 5 f 4 6 d , 5 f 2 6 d 2 7 s , 5 f 2 6 d 7 s 2 and the unknown 5 f 2 6 d 3 form a basis for interpreting 125 levels with a rms deviation of 84 cm − 1 . Due to perturbations, the theoretical description of the higher configurations 5 f 3 7 s 7 p + 5 f 3 6 d 7 p remains unsatisfactory. The known and predicted levels of U II are used for a determination of the partition function. The parametric study led us to a re-investigation of high resolution ultraviolet spectrum of uranium recorded at the Meudon Observatory in the late eighties, of which the analysis was unachieved. In the course of the present study, a number of 451 lines of U II has been classified in the region 2344 –2955 Å. One new level has been established as 5 f 3 6 d 7 p ( 4 I 6 K ( J = 5.5 at 39113.98 ± 0.1 cm − 1 .

  2. Beginning topology

    CERN Document Server

    Goodman, Sue E

    2009-01-01

    Beginning Topology is designed to give undergraduate students a broad notion of the scope of topology in areas of point-set, geometric, combinatorial, differential, and algebraic topology, including an introduction to knot theory. A primary goal is to expose students to some recent research and to get them actively involved in learning. Exercises and open-ended projects are placed throughout the text, making it adaptable to seminar-style classes. The book starts with a chapter introducing the basic concepts of point-set topology, with examples chosen to captivate students' imaginations while i

  3. Smile: a computer program for partitioning of programmed logic arrays

    Energy Technology Data Exchange (ETDEWEB)

    De Micheli, G.; Santomauro, M.

    1983-03-01

    This paper presents a new approach to optimal topological design of PLAs (programmed logic arrays). In particular the authors address the array partitioning problem and the implementation of partitioned arrays as block folded or parallel connected PLAs. They present a graph theoretic interpretation of the problem and an efficient heuristic algorithm. A computer program, SMILE, is described and experimental results are reported. 24 references.

  4. G(2) Hitchin functionals at one loop

    NARCIS (Netherlands)

    de Boer, J.; de Medeiros, P.; El-Showk, S.; Sinkovics, A.

    2008-01-01

    We consider the quantization of the effective target space description of topological M-theory in terms of the Hitchin functional whose critical points describe seven manifolds with a G(2) structure. The one-loop partition function for this theory is calculated and an extended version of it, that is

  5. Intuitive Topology

    Indian Academy of Sciences (India)

    Topology is usually taught in India in the second year of a master's degree programme. Much of the time is spent on developing such basic notions as connectedness, compactness, product topology, and the course ends with. Tychonov's theorem or Urysohn's lemma. At best, the student learns a bit about the fundamental ...

  6. 1992 Trieste lectures on topological gauge theory and Yang-Mills theory

    International Nuclear Information System (INIS)

    Thompson, G.

    1993-05-01

    In these lecture notes we explain a connection between Yang-Mills theory on arbitrary Riemann surfaces and two types of topological field theory, the so called BF and cohomological theories. The quantum Yang-Mills theory is solved exactly using path integral techniques. Explicit expressions, in terms of group representation theory, are obtained for the partition function and various correlation functions. In a particular limit the Yang-Mills theory devolves to the topological models and the previously determined correlation functions give topological information about the moduli spaces of flat connections. In particular, the partition function yields the volume of the moduli space for which an explicit expression is derived. These notes are self contained, with a basic introduction to the various ideas underlying the topological field theories. This includes some relatively new work on handling problems that arise in the presence of reducible connections, which in turn, forms the bridge between the various models under consideration. These notes are identical to those made available to participants of the 1992 summer school in Trieste, except for one or two additions added circa January 1993. (author). 52 refs, 6 figs

  7. Subcellular topological effect of particle monolayers on cell shapes and functions.

    Science.gov (United States)

    Miura, Manabu; Fujimoto, Keiji

    2006-12-01

    We studied topological effects of subcellular roughness displayed by a closely packed particle monolayer on adhesion and growth of endothelial cells. Poly(styrene-co-acrylamide) (SA) particles were prepared by soap-free emulsion copolymerization. Particle monolayers were prepared by Langmuir-Blodgett deposition using particles, which were 527 (SA053) and 1270 nm (SA127) in diameter. After 24-h incubation, cells tightly adhered on a tissue culture polystyrene dish and randomly spread. On the other hand, cells attached on particle monolayers were stretched into a narrow stalk-like shape. Lamellipodia spread from the leading edge of cells attached on SA053 monolayer to the top of the particles and gradually gathered to form clusters. This shows that cell-cell adhesion became stronger than cell-substrate interaction. Cells attached to SA127 monolayer extended to the reverse side of a particle monolayer and engulfed particles. They remained immobile without migration 24h after incubation. This shows that the inhibition of extensions on SA127 monolayer could inhibit cell migration and cell proliferation. Cell growth on the particle monolayers was suppressed compared with a flat TCPS dish. The number of cells on SA053 gradually increased, whereas that on SA127 decreased with time. When the cell seeding density was increased to 200,000 cells cm(-2), some adherent cells gradually became into contact with adjacent cells. F-actin condensations were formed at the frame of adherent cells and the thin filaments grew from the edges to connect each other with time. For the cell culture on SA053 monolayer, elongated cells showed a little alignment. Cells showed not arrangement of actin stress fibers but F-actin condensation at the contact regions with neighboring cells. Interestingly, the formed cell monolayer could be readily peeled from the particle monolayer. These results indicate that endothelial cells could recognize the surface roughness displayed by particle monolayers and

  8. Novel subgroups of attention-deficit/hyperactivity disorder identified by topological data analysis and their functional network modular organizations.

    Science.gov (United States)

    Kyeong, Sunghyon; Kim, Jae-Jin; Kim, Eunjoo

    2017-01-01

    Attention-deficit/hyperactivity disorder (ADHD) is a clinically heterogeneous condition and identification of clinically meaningful subgroups would open up a new window for personalized medicine. Thus, we aimed to identify new clinical phenotypes in children and adolescents with ADHD and to investigate whether neuroimaging findings validate the identified phenotypes. Neuroimaging and clinical data from 67 children with ADHD and 62 typically developing controls (TDCs) from the ADHD-200 database were selected. Clinical measures of ADHD symptoms and intelligence quotient (IQ) were used as input features into a topological data analysis (TDA) to identify ADHD subgroups within our sample. As external validators, graph theoretical measures obtained from the functional connectome were compared to address the biological meaningfulness of the identified subtypes. The TDA identified two unique subgroups of ADHD, labelled as mild symptom ADHD (mADHD) and severe symptom ADHD (sADHD). The output topology shape was repeatedly observed in the independent validation dataset. The graph theoretical analysis showed a decrease in the degree centrality and PageRank in the bilateral posterior cingulate cortex in the sADHD group compared with the TDC group. The mADHD group showed similar patterns of intra- and inter-module connectivity to the sADHD group. Relative to the TDC group, the inter-module connectivity between the default mode network and executive control network were significantly increased in the sADHD group but not in the mADHD group. Taken together, our results show that the data-driven TDA is potentially useful in identifying objective and biologically relevant disease phenotypes in children and adolescents with ADHD.

  9. Novel subgroups of attention-deficit/hyperactivity disorder identified by topological data analysis and their functional network modular organizations.

    Directory of Open Access Journals (Sweden)

    Sunghyon Kyeong

    Full Text Available Attention-deficit/hyperactivity disorder (ADHD is a clinically heterogeneous condition and identification of clinically meaningful subgroups would open up a new window for personalized medicine. Thus, we aimed to identify new clinical phenotypes in children and adolescents with ADHD and to investigate whether neuroimaging findings validate the identified phenotypes. Neuroimaging and clinical data from 67 children with ADHD and 62 typically developing controls (TDCs from the ADHD-200 database were selected. Clinical measures of ADHD symptoms and intelligence quotient (IQ were used as input features into a topological data analysis (TDA to identify ADHD subgroups within our sample. As external validators, graph theoretical measures obtained from the functional connectome were compared to address the biological meaningfulness of the identified subtypes. The TDA identified two unique subgroups of ADHD, labelled as mild symptom ADHD (mADHD and severe symptom ADHD (sADHD. The output topology shape was repeatedly observed in the independent validation dataset. The graph theoretical analysis showed a decrease in the degree centrality and PageRank in the bilateral posterior cingulate cortex in the sADHD group compared with the TDC group. The mADHD group showed similar patterns of intra- and inter-module connectivity to the sADHD group. Relative to the TDC group, the inter-module connectivity between the default mode network and executive control network were significantly increased in the sADHD group but not in the mADHD group. Taken together, our results show that the data-driven TDA is potentially useful in identifying objective and biologically relevant disease phenotypes in children and adolescents with ADHD.

  10. A New Approach to Investigate the Association between Brain Functional Connectivity and Disease Characteristics of Attention-Deficit/Hyperactivity Disorder: Topological Neuroimaging Data Analysis.

    Science.gov (United States)

    Kyeong, Sunghyon; Park, Seonjeong; Cheon, Keun-Ah; Kim, Jae-Jin; Song, Dong-Ho; Kim, Eunjoo

    2015-01-01

    Attention-deficit/hyperactivity disorder (ADHD) is currently diagnosed by a diagnostic interview, mainly based on subjective reports from parents or teachers. It is necessary to develop methods that rely on objectively measureable neurobiological data to assess brain-behavior relationship in patients with ADHD. We investigated the application of a topological data analysis tool, Mapper, to analyze the brain functional connectivity data from ADHD patients. To quantify the disease severity using the neuroimaging data, the decomposition of individual functional networks into normal and disease components by the healthy state model (HSM) was performed, and the magnitude of the disease component (MDC) was computed. Topological data analysis using Mapper was performed to distinguish children with ADHD (n = 196) from typically developing controls (TDC) (n = 214). In the topological data analysis, the partial clustering results of patients with ADHD and normal subjects were shown in a chain-like graph. In the correlation analysis, the MDC showed a significant increase with lower intelligence scores in TDC. We also found that the rates of comorbidity in ADHD significantly increased when the deviation of the functional connectivity from HSM was large. In addition, a significant correlation between ADHD symptom severity and MDC was found in part of the dataset. The application of HSM and topological data analysis methods in assessing the brain functional connectivity seem to be promising tools to quantify ADHD symptom severity and to reveal the hidden relationship between clinical phenotypic variables and brain connectivity.

  11. State-Dependent Changes of Connectivity Patterns and Functional Brain Network Topology in Autism Spectrum Disorder

    Science.gov (United States)

    Barttfeld, Pablo; Wicker, Bruno; Cukier, Sebastian; Navarta, Silvana; Lew, Sergio; Leiguarda, Ramon; Sigman, Mariano

    2012-01-01

    Anatomical and functional brain studies have converged to the hypothesis that autism spectrum disorders (ASD) are associated with atypical connectivity. Using a modified resting-state paradigm to drive subjects' attention, we provide evidence of a very marked interaction between ASD brain functional connectivity and cognitive state. We show that…

  12. The temporal pattern of a lesion modulates the functional network topology of remote brain regions

    NARCIS (Netherlands)

    De Baene, W.; Rutten, G.J.M.; Sitskoorn, M.M.

    2017-01-01

    Focal brain lesions can alter the morphology and function of remote brain areas. When the damage is inflicted more slowly, the functional compensation by and structural reshaping of these remote areas seems to be more effective. It remains unclear, however, whether the momentum of lesion development

  13. Toric topology

    CERN Document Server

    Buchstaber, Victor M

    2015-01-01

    This book is about toric topology, a new area of mathematics that emerged at the end of the 1990s on the border of equivariant topology, algebraic and symplectic geometry, combinatorics, and commutative algebra. It has quickly grown into a very active area with many links to other areas of mathematics, and continues to attract experts from different fields. The key players in toric topology are moment-angle manifolds, a class of manifolds with torus actions defined in combinatorial terms. Construction of moment-angle manifolds relates to combinatorial geometry and algebraic geometry of toric v

  14. Topological insulators

    CERN Document Server

    Franz, Marcel

    2013-01-01

    Topological Insulators, volume six in the Contemporary Concepts of Condensed Matter Series, describes the recent revolution in condensed matter physics that occurred in our understanding of crystalline solids. The book chronicles the work done worldwide that led to these discoveries and provides the reader with a comprehensive overview of the field. Starting in 2004, theorists began to explore the effect of topology on the physics of band insulators, a field previously considered well understood. However, the inclusion of topology brings key new elements into this old field. Whereas it was

  15. BKP plane partitions

    International Nuclear Information System (INIS)

    Foda, Omar; Wheeler, Michael

    2007-01-01

    Using BKP neutral fermions, we derive a product expression for the generating function of volume-weighted plane partitions that satisfy two conditions. If we call a set of adjacent equal height-h columns, h > 0, an h-path, then 1. Every h-path can assume one of two possible colours. 2. There is a unique way to move along an h-path from any column to another

  16. BKP plane partitions

    Energy Technology Data Exchange (ETDEWEB)

    Foda, Omar; Wheeler, Michael [Department of Mathematics and Statistics, University of Melbourne, Parkville, Victoria 3010 (Australia)

    2007-01-15

    Using BKP neutral fermions, we derive a product expression for the generating function of volume-weighted plane partitions that satisfy two conditions. If we call a set of adjacent equal height-h columns, h > 0, an h-path, then 1. Every h-path can assume one of two possible colours. 2. There is a unique way to move along an h-path from any column to another.

  17. Neutrosophic Topology

    Directory of Open Access Journals (Sweden)

    Serkan Karatas

    2016-12-01

    Full Text Available In this paper, we redefine the neutrosophic set operations and, by using them, we introduce neutrosophic topology and investigate some related properties such as neutrosophic closure, neutrosophic closure, neutrosophic interior, neutrosophic exterior, neutrosophic boundary and neutrosophic subspace.

  18. Statistical mechanics of polymer networks of any topology

    International Nuclear Information System (INIS)

    Duplantier, B.

    1989-01-01

    The statistical mechanics is considered of any polymer network with a prescribed topology, in dimension d, which was introduced previously. The basic direct renormalization theory of the associated continuum model is established. It has a very simple multiplicative structure in terms of the partition functions of the star polymers constituting the vertices of the network. A calculation is made to O(ε 2 ), where d = 4 -ε, of the basic critical dimensions σ L associated with any L=leg vertex (L ≥ 1). From this infinite series of critical exponents, any topology-dependent critical exponent can be derived. This is applied to the configuration exponent γ G of any network G to O(ε 2 ), including L-leg star polymers. The infinite sets of contact critical exponents θ between multiple points of polymers or between the cores of several star polymers are also deduced. As a particular case, the three exponents θ 0 , θ 1 , θ 2 calculated by des Cloizeaux by field-theoretic methods are recovered. The limiting exact logarithmic laws are derived at the upper critical dimension d = 4. The results are generalized to the series of topological exponents of polymer networks near a surface and of tricritical polymers at the Θ-point. Intersection properties of networks of random walks can be studied similarly. The above factorization theory of the partition function of any polymer network over its constituting L-vertices also applies to two dimensions, where it can be related to conformal invariance. The basic critical exponents σ L and thus any topological polymer exponents are then exactly known. Principal results published elsewhere are recalled

  19. PageRank analysis reveals topologically expressed genes correspond to psoriasis and their functions are associated with apoptosis resistance.

    Science.gov (United States)

    Zeng, Xue; Zhao, Jingjing; Wu, Xiaohong; Shi, Hongbo; Liu, Wali; Cui, Bingnan; Yang, Li; Ding, Xu; Song, Ping

    2016-05-01

    Psoriasis is an inflammatory skin disease. Deceleration in keratinocyte apoptosis is the most significant pathological change observed in psoriasis. To detect a meaningful correlation between the genes and gene functions associated with the mechanism underlying psoriasis, 927 differentially expressed genes (DEGs) were identified using the Gene Expression Omnibus database, GSE13355 [false discovery rate (FDR) 1] with the package in R langue. The selected DEGs were further constructed using the search tool for the retrieval of interacting genes, in order to analyze the interaction network between the DEGs. Subsequent to PageRank analysis, 14 topological hub genes were identified, and the functions and pathways in the hub genes network were analyzed. The top‑ranked hub gene, estrogen receptor‑1 (ESR1) is downregulated in psoriasis, exhibited binding sites enriched with genes possessing anti‑apoptotic functions. The ESR1 gene encodes estrogen receptor α (ERα); a reduced level of ERα expression provides a crucial foundation in response to the anti‑apoptotic activity of psoriatic keratinocytes by activating the expression of anti‑apoptotic genes. Furthermore, it was detected that the pathway that is associated most significantly with psoriasis is the pathways in cancer. Pathways in cancer may protect psoriatic cells from apoptosis by inhibition of ESR1 expression. The present study provides support towards the investigation of ESR1 gene function and elucidates that the interaction with anti‑apoptotic genes is involved in the underlying biological mechanisms of resistance to apoptosis in psoriasis. However, further investigation is required to confirm the present results.

  20. Aberrant Topologies and Reconfiguration Pattern of Functional Brain Network in Children with Second Language Reading Impairment

    Science.gov (United States)

    Liu, Lanfang; Li, Hehui; Zhang, Manli; Wang, Zhengke; Wei, Na; Liu, Li; Meng, Xiangzhi; Ding, Guosheng

    2016-01-01

    Prior work has extensively studied neural deficits in children with reading impairment (RI) in their native language but has rarely examined those of RI children in their second language (L2). A recent study revealed that the function of the local brain regions was disrupted in children with RI in L2, but it is not clear whether the disruption…

  1. On rarely generalized regular fuzzy continuous functions in fuzzy topological spaces

    Directory of Open Access Journals (Sweden)

    Appachi Vadivel

    2016-11-01

    Full Text Available In this paper, we introduce the concept of rarely generalized regular fuzzy continuous functions in the sense of A.P. Sostak's and Ramadan is introduced. Some interesting properties and characterizations of them are investigated. Also, some applications to fuzzy compact spaces are established.

  2. Topological properties of the continuous function spaces on some ordered compacta

    Czech Academy of Sciences Publication Activity Database

    Kubiś, Wieslaw; Moltó, A.; Troyanski, S.

    2013-01-01

    Roč. 21, č. 4 (2013), s. 649-659 ISSN 1877-0533 R&D Projects: GA ČR(CZ) GAP201/12/0290 Institutional support: RVO:67985840 Keywords : compact semilattice * pointwise SLD * space of continuous functions Subject RIV: BA - General Mathematics Impact factor: 0.918, year: 2013 http://link.springer.com/article/10.1007%2Fs11228-013-0258-z

  3. A topologically twisted index for three-dimensional supersymmetric theories

    Energy Technology Data Exchange (ETDEWEB)

    Benini, Francesco [Delta Institute for Theoretical Physics, University of Amsterdam, Science Park 904, 1098 XH Amsterdam (Netherlands); Blackett Laboratory, Imperial College London, South Kensington Campus, London SW7 2AZ (United Kingdom); Zaffaroni, Alberto [Dipartimento di Fisica, Università di Milano-Bicocca, I-20126 Milano (Italy); INFN, sezione di Milano-Bicocca,I-20126 Milano (Italy)

    2015-07-23

    We provide a general formula for the partition function of three-dimensional N=2 gauge theories placed on S{sup 2}×S{sup 1} with a topological twist along S{sup 2}, which can be interpreted as an index for chiral states of the theories immersed in background magnetic fields. The result is expressed as a sum over magnetic fluxes of the residues of a meromorphic form which is a function of the scalar zero-modes. The partition function depends on a collection of background magnetic fluxes and fugacities for the global symmetries. We illustrate our formula in many examples of 3d Yang-Mills-Chern-Simons theories with matter, including Aharony and Giveon-Kutasov dualities. Finally, our formula generalizes to Ω-backgrounds, as well as two-dimensional theories on S{sup 2} and four-dimensional theories on S{sup 2}×T{sup 2}. In particular this provides an alternative way to compute genus-zero A-model topological amplitudes and Gromov-Witten invariants.

  4. Identifying transitions in finite systems by means of partition function zeros and microcanonical inflection-point analysis: a comparison for elastic flexible polymers.

    Science.gov (United States)

    Rocha, Julio C S; Schnabel, Stefan; Landau, David P; Bachmann, Michael

    2014-08-01

    For the estimation of transition points of finite elastic, flexible polymers with chain lengths from 13 to 309 monomers, we compare systematically transition temperatures obtained by the Fisher partition function zeros approach with recent results from microcanonical inflection-point analysis. These methods rely on accurate numerical estimates of the density of states, which have been obtained by advanced multicanonical Monte Carlo sampling techniques. Both the Fisher zeros method and microcanonical inflection-point analysis yield very similar results and enable the unique identification of transition points in finite systems, which is typically impossible in the conventional canonical analysis of thermodynamic quantities.

  5. Bridging the gap between the human and macaque connectome: a quantitative comparison of global interspecies structure-function relationships and network topology.

    Science.gov (United States)

    Miranda-Dominguez, Oscar; Mills, Brian D; Grayson, David; Woodall, Andrew; Grant, Kathleen A; Kroenke, Christopher D; Fair, Damien A

    2014-04-16

    Resting state functional connectivity MRI (rs-fcMRI) may provide a powerful and noninvasive "bridge" for comparing brain function between patients and experimental animal models; however, the relationship between human and macaque rs-fcMRI remains poorly understood. Here, using a novel surface deformation process for species comparisons in the same anatomical space (Van Essen, 2004, 2005), we found high correspondence, but also unique hub topology, between human and macaque functional connectomes. The global functional connectivity match between species was moderate to strong (r = 0.41) and increased when considering the top 15% strongest connections (r = 0.54). Analysis of the match between functional connectivity and the underlying anatomical connectivity, derived from a previous retrograde tracer study done in macaques (Markov et al., 2012), showed impressive structure-function correspondence in both the macaque and human. When examining the strongest structural connections, we found a 70-80% match between structural and functional connectivity matrices in both species. Finally, we compare species on two widely used metrics for studying hub topology: degree and betweenness centrality. The data showed topological agreement across the species, with nodes of the posterior cingulate showing high degree and betweenness centrality. In contrast, nodes in medial frontal and parietal cortices were identified as having high degree and betweenness in the human as opposed to the macaque. Our results provide: (1) a thorough examination and validation for a surface-based interspecies deformation process, (2) a strong theoretical foundation for making interspecies comparisons of rs-fcMRI, and (3) a unique look at topological distinctions between the species.

  6. Topological constraints and modular structure in the folding and functional motions of GlpG, an intramembrane protease.

    Science.gov (United States)

    Schafer, Nicholas P; Truong, Ha H; Otzen, Daniel E; Lindorff-Larsen, Kresten; Wolynes, Peter G

    2016-02-23

    We investigate the folding of GlpG, an intramembrane protease, using perfectly funneled structure-based models that implicitly account for the absence or presence of the membrane. These two models are used to describe, respectively, folding in detergent micelles and folding within a bilayer, which effectively constrains GlpG's topology in unfolded and partially folded states. Structural free-energy landscape analysis shows that although the presence of multiple folding pathways is an intrinsic property of GlpG's modular functional architecture, the large entropic cost of organizing helical bundles in the absence of the constraining bilayer leads to pathways that backtrack (i.e., local unfolding of previously folded substructures is required when moving from the unfolded to the folded state along the minimum free-energy pathway). This backtracking explains the experimental observation of thermodynamically destabilizing mutations that accelerate GlpG's folding in detergent micelles. In contrast, backtracking is absent from the model when folding is constrained within a bilayer, the environment in which GlpG has evolved to fold. We also characterize a near-native state with a highly mobile transmembrane helix 5 (TM5) that is significantly populated under folding conditions when GlpG is embedded in a bilayer. Unbinding of TM5 from the rest of the structure exposes GlpG's active site, consistent with studies of the catalytic mechanism of GlpG that suggest that TM5 serves as a substrate gate to the active site.

  7. Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states

    DEFF Research Database (Denmark)

    Cho, Byung-Kwan; Kim, Donghyuk; Knight, Eric M.

    2014-01-01

    promoters, we do not yet have a genome-scale assessment of their function. Results: Using multiple genome-scale measurements, we elucidated the network of s-factor and promoter interactions in Escherichia coli. The reconstructed network includes 4,724 sigma-factor-specific promoters corresponding...... to transcription units (TUs), representing an increase of more than 300% over what has been previously reported. The reconstructed network was used to investigate competition between alternative sigma-factors (the sigma(70) and sigma(38) regulons), confirming the competition model of sigma substitution...... and negative regulation by alternative s-factors. Comparison with sigma-factor binding in Klebsiella pneumoniae showed that transcriptional regulation of conserved genes in closely related species is unexpectedly divergent. Conclusions: The reconstructed network reveals the regulatory complexity...

  8. A New Spinel-Olivine Oxybarometer: Near-Liquidus Partitioning of V between Olivine-Melt, Spinel-Melt, and Spinel-Olivine in Martian Basalt Composition Y980459 as a Function of Oxygen Fugacity

    Science.gov (United States)

    Papike, J. J.; Le, L.; Burger, P. V.; Shearer, C. K.; Bell, A. S.; Jones, J.

    2013-01-01

    Our research on valence state partitioning began in 2005 with a review of Cr, Fe, Ti, and V partitioning among crystallographic sites in olivine, pyroxene, and spinel [1]. That paper was followed by several on QUE94201 melt composition and specifically on Cr, V, and Eu partitioning between pyroxene and melt [2-5]. This paper represents the continuation of our examination of the partitioning of multivalent V between olivine, spinel, and melt in martian olivine-phyric basalts of Y980459 composition [6, 7]. Here we introduce a new, potentially powerful oxybarometer, V partitioning between spinel and olivine, which can be used when no melt is preserved in the meteorite. The bulk composition of QUE94201 was ideal for our study of martian pyroxene-phyric basalts and specifically the partitioning between pyroxene-melt for Cr, V, and Eu. Likewise, bulk composition Y980459 is ideal for the study of martian olivine-phyric basalts and specifically for olivine-melt, spinel-melt, and spinel-olivine partitioning of V as a function of oxygen fugacity.

  9. Pseudoperiodic topology

    CERN Document Server

    Arnold, Vladimir; Zorich, Anton

    1999-01-01

    This volume offers an account of the present state of the art in pseudoperiodic topology-a young branch of mathematics, born at the boundary between the ergodic theory of dynamical systems, topology, and number theory. Related topics include the theory of algorithms, convex integer polyhedra, Morse inequalities, real algebraic geometry, statistical physics, and algebraic number theory. The book contains many new results. Most of the articles contain brief surveys on the topics, making the volume accessible to a broad audience. From the Preface by V.I. Arnold: "The authors … have done much to s

  10. The volume conjecture and topological strings

    NARCIS (Netherlands)

    Dijkgraaf, R.; Fuji, H.

    2009-01-01

    In this paper, we discuss a relation between Jones-Witten theory of knot invariants and topological open string theory on the basis of the volume conjecture. We find a similar Hamiltonian structure for both theories, and interpret the AJ conjecture as the D-module structure for a D-brane partition

  11. Ranking beta sheet topologies of proteins

    DEFF Research Database (Denmark)

    Fonseca, Rasmus; Helles, Glennie; Winter, Pawel

    2010-01-01

    One of the challenges of protein structure prediction is to identify long-range interactions between amino acids. To reliably predict such interactions, we enumerate, score and rank all beta-topologies (partitions of beta-strands into sheets, orderings of strands within sheets and orientations of...

  12. Site-directed fluorescence labeling reveals a revised N-terminal membrane topology and functional periplasmic residues in the Escherichia coli cell division protein FtsK.

    Science.gov (United States)

    Berezuk, Alison M; Goodyear, Mara; Khursigara, Cezar M

    2014-08-22

    In Escherichia coli, FtsK is a large integral membrane protein that coordinates chromosome segregation and cell division. The N-terminal domain of FtsK (FtsKN) is essential for division, and the C terminus (FtsKC) is a well characterized DNA translocase. Although the function of FtsKN is unknown, it is suggested that FtsK acts as a checkpoint to ensure DNA is properly segregated before septation. This may occur through modulation of protein interactions between FtsKN and other division proteins in both the periplasm and cytoplasm; thus, a clear understanding of how FtsKN is positioned in the membrane is required to characterize these interactions. The membrane topology of FtsKN was initially determined using site-directed reporter fusions; however, questions regarding this topology persist. Here, we report a revised membrane topology generated by site-directed fluorescence labeling. The revised topology confirms the presence of four transmembrane segments and reveals a newly identified periplasmic loop between the third and fourth transmembrane domains. Within this loop, four residues were identified that, when mutated, resulted in the appearance of cellular voids. High resolution transmission electron microscopy of these voids showed asymmetric division of the cytoplasm in the absence of outer membrane invagination or visible cell wall ingrowth. This uncoupling reveals a novel role for FtsK in linking cell envelope septation events and yields further evidence for FtsK as a critical checkpoint of cell division. The revised topology of FtsKN also provides an important platform for future studies on essential interactions required for this process. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

  13. Subdifferential Properties of Minimal Time Functions Associated with Set-Valued Mappings with Closed Convex Graphs in Hausdorff Topological Vector Spaces

    Directory of Open Access Journals (Sweden)

    Messaoud Bounkhel

    2013-01-01

    Full Text Available For a set-valued mapping M defined between two Hausdorff topological vector spaces E and F and with closed convex graph and for a given point (x,y∈E×F, we study the minimal time function associated with the images of M and a bounded set Ω⊂F defined by M,Ω(x,y:=inf{t≥0:M(x∩(y+tΩ≠∅}. We prove and extend various properties on directional derivatives and subdifferentials of M,Ω at those points of (x,y∈E×F (both cases: points in the graph gph M and points outside the graph. These results are used to prove, in terms of the minimal time function, various new characterizations of the convex tangent cone and the convex normal cone to the graph of M at points inside gph M and to the graph of the enlargement set-valued mapping at points outside gph M. Our results extend many existing results, from Banach spaces and normed vector spaces to Hausdorff topological vector spaces (Bounkhel, 2012; Bounkhel and Thibault, 2002; Burke et al., 1992; He and Ng, 2006; and Jiang and He 2009. An application of the minimal time function M,Ω to the calmness property of perturbed optimization problems in Hausdorff topological vector spaces is given in the last section of the paper.

  14. Algebraic Topology

    CERN Document Server

    Oliver, Bob; Pawałowski, Krzystof

    1991-01-01

    As part of the scientific activity in connection with the 70th birthday of the Adam Mickiewicz University in Poznan, an international conference on algebraic topology was held. In the resulting proceedings volume, the emphasis is on substantial survey papers, some presented at the conference, some written subsequently.

  15. Topology optimization

    DEFF Research Database (Denmark)

    Bendsøe, Martin P.; Sigmund, Ole

    2007-01-01

    Taking as a starting point a design case for a compliant mechanism (a force inverter), the fundamental elements of topology optimization are described. The basis for the developments is a FEM format for this design problem and emphasis is given to the parameterization of design as a raster image...

  16. ALGEBRAIC TOPOLOGY

    Indian Academy of Sciences (India)

    TOPOLOGY. Allen Hatcher. October 2004 Volume 9 Number 10. GENERAL ARTICLES. 10 Taylor the Sailor. V Radhakrishnan. 19 Twisted Winged Endoparasitoids. An Enigma for Entomologists. Alpana Mazumdar. 25 Xanthan - A Versatile Gum. Anil Lachke. 34 From Natural Numbers to Numbers and. Curves in Nature - II.

  17. RNA topology

    OpenAIRE

    Frank-Kamenetskii, Maxim D.

    2013-01-01

    A new variety on non-coding RNA has been discovered by several groups: circular RNA (circRNA). This discovery raises intriguing questions about the possibility of the existence of knotted RNA molecules and the existence of a new class of enzymes changing RNA topology, RNA topoisomerases.

  18. ALGEBRAIC TOPOLOGY

    Indian Academy of Sciences (India)

    tion - 6. How Architectural Features Affect. Building During Earthquakes? C VRMurty. 48 Turbulence and Dispersion. K 5 Gandhi. BOOK REVIEWS. 86 Algebraic Topology. Siddhartha Gadgil. Front Cover. - .. ..-.......... -. Back Cover. Two-dimensional vertical section through a turbulent plume. (Courtesy: G S Shat, CAOS, IISc.).

  19. Differential topology first steps

    CERN Document Server

    Wallace, Andrew H

    1968-01-01

    Keeping mathematical prerequisites to a minimum, this undergraduate-level text stimulates students' intuitive understanding of topology while avoiding the more difficult subtleties and technicalities. Its focus is the method of spherical modifications and the study of critical points of functions on manifolds.No previous knowledge of topology is necessary for this text, which offers introductory material regarding open and closed sets and continuous maps in the first chapter. Succeeding chapters discuss the notions of differentiable manifolds and maps and explore one of the central topics of d

  20. Neutrosophic Crisp Sets & Neutrosophic Crisp Topological Spaces

    Directory of Open Access Journals (Sweden)

    A. A. Salama

    2014-03-01

    Full Text Available In this paper, we generalize the crisp topological spaces to the notion of neutrosophic crisp topological space, and we construct the basic concepts of the neutrosophic crisp topology. In addition to these, we introduce the definitions of neutrosophic crisp continuous function and neutrosophic crisp compact spaces. Finally, some characterizations concerning neutrosophic crisp compact spaces are presented and one obtains several properties. Possible application to GIS topology rules are touched upon.

  1. Demagnetization investigation of a partitioned rotor flux switching machine with hybrid permanent magnet

    Science.gov (United States)

    Fan, Deyang; Quan, Li; Zhu, Xiaoyong; Xiang, Zixuan; Wu, Wenye

    2017-05-01

    In this paper, the partitioned rotor flux switching permanent magnet machine with ferrite permanent magnet is proposed. By the adoption of the partitioned rotor configuration, the stator flux leakage is eliminated and the permanent magnet utilization is improved. The ferrite permanent magnet machine often suffers from irreversible demagnetization due to the inherent relatively low coercivity of ferrite permanent magnet. To mitigate the machine irreversible demagnetization risk, an improved partitioned rotor flux switching permanent magnet machine with hybrid permanent magnet topology is also proposed. Two little pieces of rare-earth permanent magnet are installed at the corners of ferrite permanent magnet, thus forming the hybrid permanent magnet topology. And the demagnetization mechanisms of both machines are clarified by the magnetic equivalent circuit method, which prove that the rare-earth permanent magnet offer magnetic protection function for the ferrite permanent magnet. Furthermore, by the 2-D finite element analysis, the demagnetization characteristics and the electromagnetic performances of the two machines are quantitively assessed, revealing that the demagnetization risk is reduced significantly. Both theoretical analysis and simulation results verify that the improved machine can not only maintain low-cost design, but also possess enhanced demagnetization withstand capability and competitive electromagnetic performances as expected.

  2. Topology with applications topological spaces via near and far

    CERN Document Server

    Naimpally, Somashekhar A

    2013-01-01

    The principal aim of this book is to introduce topology and its many applications viewed within a framework that includes a consideration of compactness, completeness, continuity, filters, function spaces, grills, clusters and bunches, hyperspace topologies, initial and final structures, metric spaces, metrization, nets, proximal continuity, proximity spaces, separation axioms, and uniform spaces. This book provides a complete framework for the study of topology with a variety of applications in science and engineering that include camouflage filters, classification, digital image processing, forgery detection, Hausdorff raster spaces, image analysis, microscopy, paleontology, pattern recognition, population dynamics, stem cell biology, topological psychology, and visual merchandising. It is the first complete presentation on topology with applications considered in the context of proximity spaces, and the nearness and remoteness of sets of objects. A novel feature throughout this book is the use of near and...

  3. Topological strings on singular elliptic Calabi-Yau 3-folds and minimal 6d SCFTs

    Science.gov (United States)

    Del Zotto, Michele; Gu, Jie; Huang, Min-xin; Kashani-Poor, Amir-Kian; Klemm, Albrecht; Lockhart, Guglielmo

    2018-03-01

    We apply the modular approach to computing the topological string partition function on non-compact elliptically fibered Calabi-Yau 3-folds with higher Kodaira singularities in the fiber. The approach consists in making an ansatz for the partition function at given base degree, exact in all fiber classes to arbitrary order and to all genus, in terms of a rational function of weak Jacobi forms. Our results yield, at given base degree, the elliptic genus of the corresponding non-critical 6d string, and thus the associated BPS invariants of the 6d theory. The required elliptic indices are determined from the chiral anomaly 4-form of the 2d worldsheet theories, or the 8-form of the corresponding 6d theories, and completely fix the holomorphic anomaly equation constraining the partition function. We introduce subrings of the known rings of Weyl invariant Jacobi forms which are adapted to the additional symmetries of the partition function, making its computation feasible to low base wrapping number. In contradistinction to the case of simpler singularities, generic vanishing conditions on BPS numbers are no longer sufficient to fix the modular ansatz at arbitrary base wrapping degree. We show that to low degree, imposing exact vanishing conditions does suffice, and conjecture this to be the case generally.

  4. Homotopical topology

    CERN Document Server

    Fomenko, Anatoly

    2016-01-01

    This classic text of the renowned Moscow mathematical school equips the aspiring mathematician with a solid grounding in the core of topology, from a homotopical perspective. Its comprehensiveness and depth of treatment are unmatched among topology textbooks: in addition to covering the basics—the fundamental notions and constructions of homotopy theory, covering spaces and the fundamental group, CW complexes, homology and cohomology, homological algebra—the book treats essential advanced topics, such as obstruction theory, characteristic classes, Steenrod squares, K-theory and cobordism theory, and, with distinctive thoroughness and lucidity, spectral sequences. The organization of the material around the major achievements of the golden era of topology—the Adams conjecture, Bott periodicity, the Hirzebruch–Riemann–Roch theorem, the Atiyah–Singer index theorem, to name a few—paints a clear picture of the canon of the subject. Grassmannians, loop spaces, and classical groups play a central role ...

  5. Classification algorithms using adaptive partitioning

    KAUST Repository

    Binev, Peter

    2014-12-01

    © 2014 Institute of Mathematical Statistics. Algorithms for binary classification based on adaptive tree partitioning are formulated and analyzed for both their risk performance and their friendliness to numerical implementation. The algorithms can be viewed as generating a set approximation to the Bayes set and thus fall into the general category of set estimators. In contrast with the most studied tree-based algorithms, which utilize piecewise constant approximation on the generated partition [IEEE Trans. Inform. Theory 52 (2006) 1335.1353; Mach. Learn. 66 (2007) 209.242], we consider decorated trees, which allow us to derive higher order methods. Convergence rates for these methods are derived in terms the parameter - of margin conditions and a rate s of best approximation of the Bayes set by decorated adaptive partitions. They can also be expressed in terms of the Besov smoothness β of the regression function that governs its approximability by piecewise polynomials on adaptive partition. The execution of the algorithms does not require knowledge of the smoothness or margin conditions. Besov smoothness conditions are weaker than the commonly used Holder conditions, which govern approximation by nonadaptive partitions, and therefore for a given regression function can result in a higher rate of convergence. This in turn mitigates the compatibility conflict between smoothness and margin parameters.

  6. On type-2 m-topological spaces

    Directory of Open Access Journals (Sweden)

    Sk. Nazmul

    2017-12-01

    Full Text Available In the present paper, we define a notion of an m2-topological space by introducing a count of openness of a multiset (mset in short and study the properties of m2-subspaces, mgp-maps etc. Decomposition theorems involving m-topologies and m2-topologies are established. The behaviour of the functional image and functional preimage of an m2-topologies, the continuity of the identity mapping and a constant mapping in m2-topologies are also examined.

  7. Henry's law constant, octanol-air partition coefficient and supercooled liquid vapor pressure of carbazole as a function of temperature: application to gas/particle partitioning in the atmosphere.

    Science.gov (United States)

    Odabasi, Mustafa; Cetin, Banu; Sofuoglu, Aysun

    2006-02-01

    The Henry's law constant for carbazole was experimentally determined between 5 and 35 degrees C using a gas-stripping technique. The following equation was obtained for dimensionless Henry's law constant (H') versus temperature (T, K): ln H' = -3982(T,K)(-1) + 1.01. Temperature-dependent octanol-air partition coefficients (KOA) and supercooled liquid vapor pressures (PL,Pa) of carbazole were also determined using the GC retention time method. The temperature dependence of KOA and PL were explained by the following: log KOA = 4076/(T,K) - 5.65, log PL(Pa) = -3948(T,K)(- 1) + 11.48. The gas and particle-phase carbazole concentrations measured previously in Chicago, IL in 1995 was used for gas/particle partitioning modeling. Octanol based absorptive partitioning model consistently underpredicted the gas/particle partition coefficients (Kp) for all sampling periods. However, overall there was a good agreement between the measured Kp and soot-based model predictions.

  8. Assessment of Liver Function Using 99mTc-Mebrofenin Hepatobiliary Scintigraphy in ALPPS (Associating Liver Partition and Portal Vein Ligation for Staged Hepatectomy

    Directory of Open Access Journals (Sweden)

    Kasia P. Cieslak

    2015-11-01

    Full Text Available ALPPS (associating liver partition and portal vein ligation for staged hepatectomy is a new surgical technique for patients in whom conventional treatment is not feasible due to insufficient future remnant liver (FRL. During the first stage of ALPPS, accelerated hypertrophy of the FRL is induced by ligation of the portal vein and in situ split of the liver. In the second stage, the deportalized liver is removed when the FRL volume has reached ≥25% of total liver volume. However, FRL volume does not necessarily reflect FRL function. 99mTc-mebrofenin hepatobiliary scintigraphy (HBS with SPECT-CT is a quantitative test enabling regional assessment of parenchymal uptake function using a validated cut-off value for the prediction of postoperative liver failure (2.7%/min/m2. This paper describes the changes in FRL function and FRL volume in a 79-year-old patient diagnosed with metachronous colonic liver metastases who underwent ALPPS. We have observed a substantial difference between the increase in FRL volume and FRL function suggesting that HBS with SPECT-CT enables monitoring of the FRL function and could be a useful tool in the timing of resection in the second stage of the ALPPS procedure.

  9. Goldbach Partitions and Sequences

    Indian Academy of Sciences (India)

    IAS Admin

    Properties of Goldbach partitions of numbers, as sums of primes, are presented and their potential applications to cryptography are described. The sequence of the number of partitions has excel- lent randomness properties. Goldbach partitions can be used to create ellipses and circles on the number line and they can also ...

  10. Advantage of topological texture measures derived from Minkowski functionals (MF) and scaling index method (SIM) in comparison with biomechanical finite elements method (FEM) for the prediction of osteoporosis

    Science.gov (United States)

    Sidorenko, Irina; Bauer, Jan; Monetti, Roberto; Mueller, Dirk; Rummeny, Ernst; Eckstein, Felix; Raeth, Christoph

    2010-03-01

    The assessment of trabecular bone microarchitecture by numerical analysis of high resolution magnetic resonance (HRMR) images provides global and local structural characteristics, which improve the understanding of the progression of osteoporosis and its diagnosis. In the present work we apply the finite elements method (FEM), which models the biomechanical behaviour of the bone, the scaling index method (SIM), which describes the topology of the structure on a local level, and Minkowski Functionals (MF), which are global topological characteristics, for analysing 3D HRMR images of 48 distal radius specimens in vitro. Diagnostic performance of texture measures derived from the numerical methods is compared with regard to the prevalence of vertebral fractures. Both topological methods show significantly better results than those obtained using bone mineral density (BMD) measurement and the failure load estimated by FEM. The receiver operating characteristic analysis for differentiating subjects with and without fractures reveals area under the curve of 0.63 for BMD, 0.66 for maximum compressive strength as determined in a biomechanical test, 0.72 for critical load estimated by FEM, 0.79 for MF4 and 0.86 for SIM, i.e. local topological characteristics derived by SIM suit best for diagnosing osteoporosis. The combination of FEM and SIM on tissue level shows that in both weak and strong bones the plate-like substructure of the trabecular network are the main load bearing part of the inner bone and that the relative amount of plates to rods is the most important characteristic for the prediction of bone strength.

  11. Stirling numbers and integer partitions | Merca | Quaestiones ...

    African Journals Online (AJOL)

    In this paper, we prove that the Stirling numbers of both kinds can be written as sums over integer partitions. As corollaries, we rewrite some identities with Stirling numbers of both kinds without Stirling numbers. Keywords: Integer partitions, symmetric functions, Stirling numbers ...

  12. A GLOBAL SOLUTION TO TOPOLOGICAL RECONSTRUCTION OF BUILDING ROOF MODELS FROM AIRBORNE LIDAR POINT CLOUDS

    Directory of Open Access Journals (Sweden)

    J. Yan

    2016-06-01

    Full Text Available This paper presents a global solution to building roof topological reconstruction from LiDAR point clouds. Starting with segmented roof planes from building LiDAR points, a BSP (binary space partitioning algorithm is used to partition the bounding box of the building into volumetric cells, whose geometric features and their topology are simultaneously determined. To resolve the inside/outside labelling problem of cells, a global energy function considering surface visibility and spatial regularization between adjacent cells is constructed and minimized via graph cuts. As a result, the cells are labelled as either inside or outside, where the planar surfaces between the inside and outside form the reconstructed building model. Two LiDAR data sets of Yangjiang (China and Wuhan University (China are used in the study. Experimental results show that the completeness of reconstructed roof planes is 87.5%. Comparing with existing data-driven approaches, the proposed approach is global. Roof faces and edges as well as their topology can be determined at one time via minimization of an energy function. Besides, this approach is robust to partial absence of roof planes and tends to reconstruct roof models with visibility-consistent surfaces.

  13. Differential topology

    CERN Document Server

    Guillemin, Victor

    2010-01-01

    Differential Topology provides an elementary and intuitive introduction to the study of smooth manifolds. In the years since its first publication, Guillemin and Pollack's book has become a standard text on the subject. It is a jewel of mathematical exposition, judiciously picking exactly the right mixture of detail and generality to display the richness within. The text is mostly self-contained, requiring only undergraduate analysis and linear algebra. By relying on a unifying idea-transversality-the authors are able to avoid the use of big machinery or ad hoc techniques to establish the main

  14. $\\mathcal{N}=2^\\star$ from Topological Amplitudes in String Theory

    CERN Document Server

    Florakis, Ioannis

    2016-01-01

    In this paper, we explicitly construct string theory backgrounds that realise the so-called $\\mathcal N=2^\\star$ gauge theory. We prove the consistency of our models by calculating their partition function and obtaining the correct gauge theory spectrum. We further provide arguments in favour of the universality of our construction which covers a wide class of models all of which engineer the same gauge theory. We reproduce the corresponding Nekrasov partition function once the $\\Omega$-deformation is included and the appropriate field theory limit taken. This is achieved by calculating the topological amplitudes $F_g$ in the string models. In addition to heterotic and type II constructions, we also realise the mass deformation in type I theory, thus leading to a natural way of uplifting the result to the instanton sector.

  15. Transfer functions for solid-solution partitioning of cadmium, copper, nickel, lead and zinc in soils: derivation of relationships for free metal ion activities and validation with independent data

    NARCIS (Netherlands)

    Groenenberg, J.E.; Römkens, P.F.A.M.; Comans, R.N.J.; Luster, J.; Pampura, T.; Shotbolt, L.; Tipping, E.; Vries, de W.

    2010-01-01

    Models to predict the solid-solution partitioning of trace metals are important tools in risk assessment, providing information on the biological availability of metals and their leaching. Empirically based models, or transfer functions, published to date differ with respect to the mathematical

  16. Topological gravity with minimal matter

    International Nuclear Information System (INIS)

    Li Keke

    1991-01-01

    Topological minimal matter, obtained by twisting the minimal N = 2 supeconformal field theory, is coupled to two-dimensional topological gravity. The free field formulation of the coupled system allows explicit representations of BRST charge, physical operators and their correlation functions. The contact terms of the physical operators may be evaluated by extending the argument used in a recent solution of topological gravity without matter. The consistency of the contact terms in correlation functions implies recursion relations which coincide with the Virasoro constraints derived from the multi-matrix models. Topological gravity with minimal matter thus provides the field theoretic description for the multi-matrix models of two-dimensional quantum gravity. (orig.)

  17. A Systematic Approach for Computing Zero-Point Energy, Quantum Partition Function, and Tunneling Effect Based on Kleinert's Variational Perturbation Theory.

    Science.gov (United States)

    Wong, Kin-Yiu; Gao, Jiali

    2008-09-09

    In this paper, we describe an automated integration-free path-integral (AIF-PI) method, based on Kleinert's variational perturbation (KP) theory, to treat internuclear quantum-statistical effects in molecular systems. We have developed an analytical method to obtain the centroid potential as a function of the variational parameter in the KP theory, which avoids numerical difficulties in path-integral Monte Carlo or molecular dynamics simulations, especially at the limit of zero-temperature. Consequently, the variational calculations using the KP theory can be efficiently carried out beyond the first order, i.e., the Giachetti-Tognetti-Feynman-Kleinert variational approach, for realistic chemical applications. By making use of the approximation of independent instantaneous normal modes (INM), the AIF-PI method can readily be applied to many-body systems. Previously, we have shown that in the INM approximation, the AIF-PI method is accurate for computing the quantum partition function of a water molecule (3 degrees of freedom) and the quantum correction factor for the collinear H(3) reaction rate (2 degrees of freedom). In this work, the accuracy and properties of the KP theory are further investigated by using the first three order perturbations on an asymmetric double-well potential, the bond vibrations of H(2), HF, and HCl represented by the Morse potential, and a proton-transfer barrier modeled by the Eckart potential. The zero-point energy, quantum partition function, and tunneling factor for these systems have been determined and are found to be in excellent agreement with the exact quantum results. Using our new analytical results at the zero-temperature limit, we show that the minimum value of the computed centroid potential in the KP theory is in excellent agreement with the ground state energy (zero-point energy) and the position of the centroid potential minimum is the expectation value of particle position in wave mechanics. The fast convergent property

  18. Topology of helical fluid flow

    DEFF Research Database (Denmark)

    Andersen, Morten; Brøns, Morten

    2014-01-01

    Phys. Fluids 25, 1949–1952) contains an infinite sum of modified Bessel functions. Using the approach by Okulov (Okulov, V. L. 1995 Russ. J. Eng. Thermophys. 5, 63–75) we obtain a closed-form approximation which is considerably easier to analyse. Critical points of the stream function can be found from...... function for the topology of the streamline pattern in incompressible flows. On this basis, we perform a comprehensive study of the topology of the flow field generated by a helical vortex filament in an ideal fluid. The classical expression for the stream function obtained by Hardin (Hardin, J. C. 1982...... the zeroes of a single real function of one variable, and we show that three different flow topologies can occur, depending on a single dimensionless parameter. By including the self-induced velocity on the vortex filament by a localised induction approximation, the stream function is slightly modified...

  19. Effective scheme for partitioning covalent bonds in density-functional embedding theory: From molecules to extended covalent systems.

    Science.gov (United States)

    Huang, Chen; Muñoz-García, Ana Belén; Pavone, Michele

    2016-12-28

    Density-functional embedding theory provides a general way to perform multi-physics quantum mechanics simulations of large-scale materials by dividing the total system's electron density into a cluster's density and its environment's density. It is then possible to compute the accurate local electronic structures and energetics of the embedded cluster with high-level methods, meanwhile retaining a low-level description of the environment. The prerequisite step in the density-functional embedding theory is the cluster definition. In covalent systems, cutting across the covalent bonds that connect the cluster and its environment leads to dangling bonds (unpaired electrons). These represent a major obstacle for the application of density-functional embedding theory to study extended covalent systems. In this work, we developed a simple scheme to define the cluster in covalent systems. Instead of cutting covalent bonds, we directly split the boundary atoms for maintaining the valency of the cluster. With this new covalent embedding scheme, we compute the dehydrogenation energies of several different molecules, as well as the binding energy of a cobalt atom on graphene. Well localized cluster densities are observed, which can facilitate the use of localized basis sets in high-level calculations. The results are found to converge faster with the embedding method than the other multi-physics approach ONIOM. This work paves the way to perform the density-functional embedding simulations of heterogeneous systems in which different types of chemical bonds are present.

  20. A multilevel search algorithm for the maximization of submodular functions applied to the quadratic cost partition problem

    NARCIS (Netherlands)

    Goldengorin, B.; Ghosh, D.

    Maximization of submodular functions on a ground set is a NP-hard combinatorial optimization problem. Data correcting algorithms are among the several algorithms suggested for solving this problem exactly and approximately. From the point of view of Hasse diagrams data correcting algorithms use

  1. Species richness of limestone grasslands increases with trait overlap: evidence from within- and between-species functional diversity partitioning

    Czech Academy of Sciences Publication Activity Database

    Le Bagousse-Pinguet, Y.; de Bello, Francesco; Vandewalle, M.; Lepš, J.; Sykes, M. T.

    2014-01-01

    Roč. 102, č. 2 (2014), s. 466-474 ISSN 0022-0477 R&D Projects: GA ČR GAP505/12/1296 Institutional support: RVO:67985939 Keywords : functional diversity * species richness * trait overlap Subject RIV: EH - Ecology, Behaviour Impact factor: 5.521, year: 2014

  2. Differential topology

    CERN Document Server

    Margalef-Roig, J

    1992-01-01

    ...there are reasons enough to warrant a coherent treatment of the main body of differential topology in the realm of Banach manifolds, which is at the same time correct and complete. This book fills the gap: whenever possible the manifolds treated are Banach manifolds with corners. Corners add to the complications and the authors have carefully fathomed the validity of all main results at corners. Even in finite dimensions some results at corners are more complete and better thought out here than elsewhere in the literature. The proofs are correct and with all details. I see this book as a reliable monograph of a well-defined subject; the possibility to fall back to it adds to the feeling of security when climbing in the more dangerous realms of infinite dimensional differential geometry. Peter W. Michor

  3. Acoustic design of boundary segments in aircraft fuselages using topology optimization and a specialized acoustic pressure function

    Science.gov (United States)

    Radestock, Martin; Rose, Michael; Monner, Hans Peter

    2017-04-01

    In most aviation applications, a major cost benefit can be achieved by a reduction of the system weight. Often the acoustic properties of the fuselage structure are not in the focus of the primary design process, too. A final correction of poor acoustic properties is usually done using insulation mats in the chamber between the primary and secondary shell. It is plausible that a more sophisticated material distribution in that area can result in a substantially reduced weight. Topology optimization is a well-known approach to reduce material of compliant structures. In this paper an adaption of this method to acoustic problems is investigated. The gap full of insulation mats is suitably parameterized to achieve different material distributions. To find advantageous configurations, the objective in the underlying topology optimization is chosen to obtain good acoustic pressure patterns in the aircraft cabin. An important task in the optimization is an adequate Finite Element model of the system. This can usually not be obtained from commercially available programs due to the lack of special sensitivity data with respect to the design parameters. Therefore an appropriate implementation of the algorithm has been done, exploiting the vector and matrix capabilities in the MATLABQ environment. Finally some new aspects of the Finite Element implementation will also be presented, since they are interesting on its own and can be generalized to efficiently solve other partial differential equations as well.

  4. Disrupted small-world brain functional network topology in male patients with severe obstructive sleep apnea revealed by resting-state fMRI

    Directory of Open Access Journals (Sweden)

    Chen L

    2017-06-01

    Full Text Available Li-Ting Chen,1,* Xiao-Le Fan,2,* Hai-Jun Li,1 Si Nie,1 Hong-Han Gong,1 Wei Zhang,3 Xian-Jun Zeng,1 Ping Long,4 De-Chang Peng1 1Department of Radiology, 2Department of General Surgery, 3Department of Pneumology, 4Department of Otolaryngology, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, People’s Republic of China *These authors contributed equally to this work Purpose: Obstructive sleep apnea (OSA is a common sleep-related breathing disorder that can damage cognitive function. However, the functional network organization remains poorly understood. The aim of this study was to investigate the topological properties of OSA patients using a graph theoretical analysis.Patients and methods: A total of 30 male patients with untreated severe OSA and 25 male education- and age-matched good sleepers (GSs underwent functional magnetic resonance imaging (MRI examinations. Clinical and cognitive evaluations were conducted by an experienced psychologist. GRETNA (a toolbox for topological analysis of imaging connectomics was used to construct the brain functional network and calculate the small-world properties (γ, λ, σ, Eglob, and Eloc. Relationships between these small-world properties and clinical and neuropsychological assessments were investigated in OSA patients.Results: The networks of both OSA patients and GSs exhibited efficient small-world topology over the sparsity range of 0.05–0.40. Compared with GSs, the OSA group had significantly decreased γ, but significantly increased λ and σ. The OSA group’s brain network showed significantly decreased Eglob (P<0.05 over the sparsity range of 0.09–0.15, but significantly increased Eloc over the sparsity range of 0.23–0.40. In OSA patients, γ was significantly negatively correlated with apnea–hypopnea index (AHI; r=−0.326, P=0.015 and Epworth Sleepiness Scale (ESS; r=−0.274, P=0.043, λ was significantly positively correlated with AHI (r=0.373, P=0.005 and

  5. Emerging Trends in Topological Insulators and Topological ...

    Indian Academy of Sciences (India)

    Moreover, proximity induced superconductivity in these systemscan lead to a state that supports zero energy Majoranafermions, and the phase is known as topological superconductors.In this article, the basic idea of topological insulatorsand topological superconductors are presented alongwith their experimental ...

  6. Induced topological pressure for topological dynamical systems

    International Nuclear Information System (INIS)

    Xing, Zhitao; Chen, Ercai

    2015-01-01

    In this paper, inspired by the article [J. Jaerisch et al., Stochastics Dyn. 14, 1350016, pp. 1-30 (2014)], we introduce the induced topological pressure for a topological dynamical system. In particular, we prove a variational principle for the induced topological pressure

  7. Niche partitioning of feeding microhabitats produces a unique function for herbivorous rabbitfishes (Perciformes, Siganidae) on coral reefs

    Science.gov (United States)

    Fox, R. J.; Bellwood, D. R.

    2013-03-01

    Niche theory predicts that coexisting species minimise competition by evolving morphological or behavioural specialisations that allow them to spread out along resource axes such as space, diet and temporal activity. These specialisations define how a species interacts with its environment and, by extension, determine its functional role. Here, we examine the feeding niche of three species of coral reef-dwelling rabbitfishes (Siganidae, Siganus). By comparing aspects of their feeding behaviour (bite location, bite rate, foraging distance) with that of representative species from two other abundant herbivorous fish families, the parrotfishes (Labridae, Scarus) and surgeonfishes (Acanthuridae, Acanthurus), we examine whether rabbitfishes have a feeding niche distinct from other members of the herbivore guild. Measurements of the penetration of the fishes' snouts and bodies into reef concavities when feeding revealed that rabbitfish fed to a greater degree from reef crevices and interstices than other herbivores. There was just a 40 % overlap in the penetration-depth niche between rabbitfish and surgeonfish and a 45 % overlap between rabbitfish and parrotfish, compared with the almost complete niche overlap (95 %) recorded for parrotfish and surgeonfish along this spatial niche axis. Aspects of the morphology of rabbitfish which may contribute to this niche segregation include a comparatively longer, narrower snout and narrower head. Our results suggest that sympatric coexistence of rabbitfish and other reef herbivores is facilitated by segregation along a spatial (and potentially dietary) axis. This segregation results in a unique functional role for rabbitfishes among roving herbivores that of "crevice-browser": a group that specifically feeds on crevice-dwelling algal or benthic organisms. This functional trait may have implications for reef ecosystem processes in terms of controlling the successional development of crevice-based algal communities, reducing their

  8. Topological characteristics of model gels

    International Nuclear Information System (INIS)

    Miller, Mark A; Hansen, Jean-Pierre; Blaak, Ronald

    2010-01-01

    The Euler characteristic of an object is a topological invariant determined by the number of handles and holes that it contains. Here, we use the Euler characteristic to profile the topology of model three-dimensional gel-forming fluids as a function of increasing length scale. These profiles act as a 'topological fingerprint' of the structure, and can be interpreted in terms of three types of topological events. As model fluids we have considered a system of dipolar dumbbells, and suspensions of adhesive hard spheres with isotropic and patchy interactions in turn. The correlation between the percolation threshold and the length scale on which the Euler characteristic passes through zero is examined and found to be system-dependent. A scheme for the efficient calculation of the Euler characteristic with and without periodic boundary conditions is described.

  9. Renormalization of topological field theory

    International Nuclear Information System (INIS)

    Birmingham, D.; Rakowski, M.; Thompson, G.

    1988-11-01

    One loop corrections to topological field theory in three and four dimensions are presented. By regularizing determinants, we compute the effective action and β-function in four dimensional topological Yang-Mills theory and find that the BRST symmetry is preserved. Moreover, the minima of the effective action still correspond to instanton configurations. In three dimensions, an analysis of the Chern-Simons theory shows that the topological nature of the theory is also preserved to this order. In addition, we find that this theory possesses an extra supersymmetry when quantized in the Landau gauge. Using dimensional regularization, we then study the Ward identities of the extended BRST symmetry in the three dimensional topological Yang-Mills-Higgs model. (author). 22 refs

  10. Galois conjugates of topological phases

    Science.gov (United States)

    Freedman, M. H.; Gukelberger, J.; Hastings, M. B.; Trebst, S.; Troyer, M.; Wang, Z.

    2012-01-01

    Galois conjugation relates unitary conformal field theories and topological quantum field theories (TQFTs) to their nonunitary counterparts. Here we investigate Galois conjugates of quantum double models, such as the Levin-Wen model. While these Galois-conjugated Hamiltonians are typically non-Hermitian, we find that their ground-state wave functions still obey a generalized version of the usual code property (local operators do not act on the ground-state manifold) and hence enjoy a generalized topological protection. The key question addressed in this paper is whether such nonunitary topological phases can also appear as the ground states of Hermitian Hamiltonians. Specific attempts at constructing Hermitian Hamiltonians with these ground states lead to a loss of the code property and topological protection of the degenerate ground states. Beyond this, we rigorously prove that no local change of basis can transform the ground states of the Galois-conjugated doubled Fibonacci theory into the ground states of a topological model whose Hermitian Hamiltonian satisfies Lieb-Robinson bounds. These include all gapped local or quasilocal Hamiltonians. A similar statement holds for many other nonunitary TQFTs. One consequence is that these nonunitary TQFTs do not describe physical realizations of topological phases. In particular, this implies that the “Gaffnian” wave function can not be the ground state of a gapped fractional quantum Hall state.

  11. Partitioning the impact of environment and spatial structure on alpha and beta components of taxonomic, functional, and phylogenetic diversity in European ants.

    Science.gov (United States)

    Arnan, Xavier; Cerdá, Xim; Retana, Javier

    2015-01-01

    We analyze the relative contribution of environmental and spatial variables to the alpha and beta components of taxonomic (TD), phylogenetic (PD), and functional (FD) diversity in ant communities found along different climate and anthropogenic disturbance gradients across western and central Europe, in order to assess the mechanisms structuring ant biodiversity. To this aim we calculated alpha and beta TD, PD, and FD for 349 ant communities, which included a total of 155 ant species; we examined 10 functional traits and phylogenetic relatedness. Variation partitioning was used to examine how much variation in ant diversity was explained by environmental and spatial variables. Autocorrelation in diversity measures and each trait's phylogenetic signal were also analyzed. We found strong autocorrelation in diversity measures. Both environmental and spatial variables significantly contributed to variation in TD, PD, and FD at both alpha and beta scales; spatial structure had the larger influence. The different facets of diversity showed similar patterns along environmental gradients. Environment explained a much larger percentage of variation in FD than in TD or PD. All traits demonstrated strong phylogenetic signals. Our results indicate that environmental filtering and dispersal limitations structure all types of diversity in ant communities. Strong dispersal limitations appear to have led to clustering of TD, PD, and FD in western and central Europe, probably because different historical and evolutionary processes generated different pools of species. Remarkably, these three facets of diversity showed parallel patterns along environmental gradients. Trait-mediated species sorting and niche conservatism appear to structure ant diversity, as evidenced by the fact that more variation was explained for FD and that all traits had strong phylogenetic signals. Since environmental variables explained much more variation in FD than in PD, functional diversity should be a

  12. Evaluation of the grand-canonical partition function using expanded Wang-Landau simulations. II. Adsorption of atomic and molecular fluids in a porous material.

    Science.gov (United States)

    Desgranges, Caroline; Delhommelle, Jerome

    2012-05-14

    We propose to apply expanded Wang-Landau simulations to study the adsorption of atomic and molecular fluids in porous materials. This approach relies on a uniform sampling of the number of atoms and molecules adsorbed. The method consists in determining a high-accuracy estimate of the grand-canonical partition function for the adsorbed fluids. Then, using the formalism of statistical mechanics, we calculate absolute and excess thermodynamic properties relevant to adsorption processes. In this paper, we examine the adsorption of argon and carbon dioxide in the isoreticular metal-organic framework (IRMOF-1). We assess the reliability of the method by showing that the predicted adsorption isotherms and isosteric heats are in excellent agreement with simulation results obtained from grand-canonical Monte Carlo simulations. We also show that the proposed method is very efficient since a single expanded Wang-Landau simulation run at a given temperature provides the whole adsorption isotherm. Moreover, this approach provides a direct access to a wide range of thermodynamic properties, such as, e.g., the excess Gibbs free energy and the excess entropy of adsorption.

  13. Measurement of polyurethane foam - air partition coefficients for semivolatile organic compounds as a function of temperature: Application to passive air sampler monitoring.

    Science.gov (United States)

    Francisco, Ana Paula; Harner, Tom; Eng, Anita

    2017-05-01

    Polyurethane foam - air partition coefficients (K PUF-air ) for 9 polycyclic aromatic hydrocarbons (PAHs), 10 alkyl-substituted PAHs, 4 organochlorine pesticides (OCPs) and dibenzothiophene were measured as a function of temperature over the range 5 °C-35 °C, using a generator column approach. Enthalpies of PUF-to-air transfer (ΔH PUF-air , kJ/mol) were determined from the slopes of log K PUF-air versus 1000/T (K), and have an average value of 81.2 ± 7.03 kJ/mol. The log K PUF-air values at 22 °C ranged from 4.99 to 7.25. A relationship for log K PUF-air versus log K OA was shown to agree with a previous relationship based on only polychlorinated biphenyls (PCBs) and derived from long-term indoor uptake study experiments. The results also confirm that the existing K OA -based model for predicting log K PUF-air values is accurate. This new information is important in the derivation of uptake profiles and effective air sampling volumes for PUF disk samplers so that results can be reported in units of concentration in air. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

  14. Determination of octanol-air partition coefficients of organochlorine pesticides (OCPs) as a function of temperature: application to air-soil exchange.

    Science.gov (United States)

    Odabasi, Mustafa; Cetin, Banu

    2012-12-30

    Octanol-air partition coefficients (K(OA)) for 7 organochlorine pesticides (OCPs) were determined as a function of temperature using the GC retention time method. Log K(OA) values at 25 °C ranged over two orders of magnitude, between 8.32 (chlorpyrifos) and 10.48 (methoxychlor). The determined K(OA) values were within a factor of 0.5 (endosulfan sulfate) to 7.9 (endrin aldehyde) for values calculated as the ratio of octanol-water partition coefficient to dimensionless Henry's law constant. The internal energies of phase transfer between octanol and air (ΔU(OA)) ranged between 71.8 and 95.4 kJ mol(-1) and they were within the reported range for OCPs (55.8-105 kJ mol(-1)). Atmospheric and soil OCP concentrations were also measured in Izmir, Turkey, and data used to investigate the soil-air gas exchange. Net soil-air gas exchange fluxes of OCPs ranged from -0.01 (volatilization, cis-nonachlor) to 56.4 ng m(-2) day(-1) (deposition, chlorpyrifos) in winter, while in summer they ranged from -0.03 (trans-nonachlor) to 329 ng m(-2) day(-1) (endosulfan I). In both sampling periods, endosulfan I and II, trans-nonachlor, p,p'-DDD and p,p'-DDT were generally deposited to the soil while γ-HCH and heptachlor epoxide mostly volatilized. Fluxes of other OCPs were variable (volatilization or absorption) due to their largely fluctuating ambient air concentrations. Calculated dry deposition and recently measured wet deposition fluxes were used to estimate the relative importance of different mechanisms (i.e., dry deposition, wet deposition, gas absorption, and volatilization) to the local soil pollutant inventory. Generally, all mechanisms contributed significantly to the soil OCP inventory. Volatilization fluxes were generally much lower than the sum of input fluxes (dry deposition, wet deposition and gas absorption) for most of the OCPs indicating a net deposition to the soil. Copyright © 2012 Elsevier Ltd. All rights reserved.

  15. The Euler–Riemann gases, and partition identities

    International Nuclear Information System (INIS)

    Chair, Noureddine

    2013-01-01

    The Euler theorem in partition theory and its generalization are derived from a non-interacting quantum field theory in which each bosonic mode with a given frequency is equivalent to a sum of bosonic mode whose frequency is twice (s-times) as much, and a fermionic (parafermionic) mode with the same frequency. Explicit formulas for the graded parafermionic partition functions are obtained, and the inverse of the graded partition function (IGPPF), turns out to be bosonic (fermionic) partition function depending on the parity of the order s of the parafermions. It is also shown that these partition functions are generating functions of partitions of integers with restrictions, the Euler generating function is identified with the inverse of the graded parafermionic partition function of order 2. As a result we obtain new sequences of partitions of integers with given restrictions. If the parity of the order s is even, then mixing a system of parafermions with a system whose partition function is (IGPPF), results in a system of fermions and bosons. On the other hand, if the parity of s is odd, then, the system we obtain is still a mixture of fermions and bosons but the corresponding Fock space of states is truncated. It turns out that these partition functions are given in terms of the Jacobi theta function θ 4 , and generate sequences in partition theory. Our partition functions coincide with the overpartitions of Corteel and Lovejoy, and jagged partitions in conformal field theory. Also, the partition functions obtained are related to the Ramond characters of the superconformal minimal models, and in the counting of the Moore–Read edge spectra that appear in the fractional quantum Hall effect. The different partition functions for the Riemann gas that are the counter parts of the Euler gas are obtained by a simple change of variables. In particular the counter part of the Jacobi theta function is (ζ(2t))/(ζ(t) 2 ) . Finally, we propose two formulas which brings

  16. Topological recursion for chord diagrams, RNA complexes, and cells in moduli spaces

    DEFF Research Database (Denmark)

    Andersen, Jørgen Goul; chekhov, Leonid; Penner, Robert

    2013-01-01

    We introduce and study the Hermitian matrix model with potential V(x)=x^2/2-stx/(1-tx), which enumerates the number of linear chord diagrams of fixed genus with specified numbers of backbones generated by s and chords generated by t. For the one-cut solution, the partition function, correlators a...... topology as well as the number of cells in Riemann's moduli spaces for bordered surfaces. The free energies are computed here in principle for all genera and explicitly for genera less than four....... and free energies are convergent for small t and all s as a perturbation of the Gaussian potential, which arises for st=0. This perturbation is computed using the formalism of the topological recursion. The corresponding enumeration of chord diagrams gives at once the number of RNA complexes of a given...

  17. Axion topological field theory of topological superconductors

    Science.gov (United States)

    Qi, Xiao-Liang; Witten, Edward; Zhang, Shou-Cheng

    2013-04-01

    Topological superconductors are gapped superconductors with gapless and topologically robust quasiparticles propagating on the boundary. In this paper, we present a topological field theory description of three-dimensional time-reversal invariant topological superconductors. In our theory the topological superconductor is characterized by a topological coupling between the electromagnetic field and the superconducting phase fluctuation, which has the same form as the coupling of “axions” with an Abelian gauge field. As a physical consequence of our theory, we predict the level crossing induced by the crossing of special “chiral” vortex lines, which can be realized by considering s-wave superconductors in proximity with the topological superconductor. Our theory can also be generalized to the coupling with a gravitational field.

  18. Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

    Science.gov (United States)

    Zhang, Zengcui; Belcram, Harry; Gornicki, Piotr; Charles, Mathieu; Just, Jérémy; Huneau, Cécile; Magdelenat, Ghislaine; Couloux, Arnaud; Samain, Sylvie; Gill, Bikram S.; Rasmussen, Jack B.; Barbe, Valérie; Faris, Justin D.; Chalhoub, Boulos

    2011-01-01

    The Q gene encodes an AP2-like transcription factor that played an important role in domestication of polyploid wheat. The chromosome 5A Q alleles (5AQ and 5Aq) have been well studied, but much less is known about the q alleles on wheat homoeologous chromosomes 5B (5Bq) and 5D (5Dq). We investigated the organization, evolution, and function of the Q/q homoeoalleles in hexaploid wheat (Triticum aestivum L.). Q/q gene sequences are highly conserved within and among the A, B, and D genomes of hexaploid wheat, the A and B genomes of tetraploid wheat, and the A, S, and D genomes of the diploid progenitors, but the intergenic regions of the Q/q locus are highly divergent among homoeologous genomes. Duplication of the q gene 5.8 Mya was likely followed by selective loss of one of the copies from the A genome progenitor and the other copy from the B, D, and S genomes. A recent V329-to-I mutation in the A lineage is correlated with the Q phenotype. The 5Bq homoeoalleles became a pseudogene after allotetraploidization. Expression analysis indicated that the homoeoalleles are coregulated in a complex manner. Combined phenotypic and expression analysis indicated that, whereas 5AQ plays a major role in conferring domestication-related traits, 5Dq contributes directly and 5Bq indirectly to suppression of the speltoid phenotype. The evolution of the Q/q loci in polyploid wheat resulted in the hyperfunctionalization of 5AQ, pseudogenization of 5Bq, and subfunctionalization of 5Dq, all contributing to the domestication traits. PMID:22042872

  19. Mirror of the refined topological vertex from a matrix model

    CERN Document Server

    Eynard, B

    2011-01-01

    We find an explicit matrix model computing the refined topological vertex, starting from its representation in terms of plane partitions. We then find the spectral curve of that matrix model, and thus the mirror symmetry of the refined vertex. With the same method we also find a matrix model for the strip geometry, and we find its mirror curve. The fact that there is a matrix model shows that the refined topological string amplitudes also satisfy the remodeling the B-model construction.

  20. The topology of architecture

    DEFF Research Database (Denmark)

    Marcussen, Lars

    2003-01-01

    Rummets topologi, Historiens topologi: betragtninger om menneskets orientering til rum - fra hulen over beherskelse af flere akser til det flydende rum.......Rummets topologi, Historiens topologi: betragtninger om menneskets orientering til rum - fra hulen over beherskelse af flere akser til det flydende rum....

  1. Optical image encryption topology.

    Science.gov (United States)

    Yong-Liang, Xiao; Xin, Zhou; Qiong-Hua, Wang; Sheng, Yuan; Yao-Yao, Chen

    2009-10-15

    Optical image encryption topology is proposed based on the principle of random-phase encoding. Various encryption topological units, involving peer-to-peer, ring, star, and tree topologies, can be realized by an optical 6f system. These topological units can be interconnected to constitute an optical image encryption network. The encryption and decryption can be performed in both digital and optical methods.

  2. Strongly Correlated Topological Insulators

    Science.gov (United States)

    2016-02-03

    Strongly Correlated Topological Insulators In the past year, the grant was used for work in the field of topological phases, with emphasis on finding...surface of topological insulators. In the past 3 years, we have started a new direction, that of fractional topological insulators. These are materials...in which a topologically nontrivial quasi-flat band is fractionally filled and then subject to strong interactions. The views, opinions and/or

  3. Introduction to topology

    CERN Document Server

    Gamelin, Theodore W

    1999-01-01

    A fresh approach to introductory topology, this volume explains nontrivial applications of metric space topology to analysis, clearly establishing their relationship. Also, topics from elementary algebraic topology focus on concrete results with minimal algebraic formalism. The first two chapters consider metric space and point-set topology; the second two, algebraic topological material. 1983 edition. Solutions to Selected Exercises. List of Notations. Index. 51 illustrations.

  4. Ranking beta sheet topologies of proteins

    DEFF Research Database (Denmark)

    Fonseca, Rasmus; Helles, Glennie; Winter, Pawel

    2010-01-01

    One of the challenges of protein structure prediction is to identify long-range interactions between amino acids. To reliably predict such interactions, we enumerate, score and rank all beta-topologies (partitions of beta-strands into sheets, orderings of strands within sheets and orientations...... of paired strands) of a given protein. We show that the beta-topology corresponding to the native structure is, with high probability, among the top-ranked. Since full enumeration is very time-consuming, we also suggest a method to deal with proteins with many beta-strands. The results reported...... in this paper are highly relevant for ab initio protein structure prediction methods based on decoy generation. The top-ranked beta-topologies can be used to find initial conformations from which conformational searches can be started. They can also be used to filter decoys by removing those with poorly...

  5. Mirror symmetry, toric branes and topological string amplitudes as polynomials

    International Nuclear Information System (INIS)

    Alim, Murad

    2009-01-01

    The central theme of this thesis is the extension and application of mirror symmetry of topological string theory. The contribution of this work on the mathematical side is given by interpreting the calculated partition functions as generating functions for mathematical invariants which are extracted in various examples. Furthermore the extension of the variation of the vacuum bundle to include D-branes on compact geometries is studied. Based on previous work for non-compact geometries a system of differential equations is derived which allows to extend the mirror map to the deformation spaces of the D-Branes. Furthermore, these equations allow the computation of the full quantum corrected superpotentials which are induced by the D-branes. Based on the holomorphic anomaly equation, which describes the background dependence of topological string theory relating recursively loop amplitudes, this work generalizes a polynomial construction of the loop amplitudes, which was found for manifolds with a one dimensional space of deformations, to arbitrary target manifolds with arbitrary dimension of the deformation space. The polynomial generators are determined and it is proven that the higher loop amplitudes are polynomials of a certain degree in the generators. Furthermore, the polynomial construction is generalized to solve the extension of the holomorphic anomaly equation to D-branes without deformation space. This method is applied to calculate higher loop amplitudes in numerous examples and the mathematical invariants are extracted. (orig.)

  6. Mirror symmetry, toric branes and topological string amplitudes as polynomials

    Energy Technology Data Exchange (ETDEWEB)

    Alim, Murad

    2009-07-13

    The central theme of this thesis is the extension and application of mirror symmetry of topological string theory. The contribution of this work on the mathematical side is given by interpreting the calculated partition functions as generating functions for mathematical invariants which are extracted in various examples. Furthermore the extension of the variation of the vacuum bundle to include D-branes on compact geometries is studied. Based on previous work for non-compact geometries a system of differential equations is derived which allows to extend the mirror map to the deformation spaces of the D-Branes. Furthermore, these equations allow the computation of the full quantum corrected superpotentials which are induced by the D-branes. Based on the holomorphic anomaly equation, which describes the background dependence of topological string theory relating recursively loop amplitudes, this work generalizes a polynomial construction of the loop amplitudes, which was found for manifolds with a one dimensional space of deformations, to arbitrary target manifolds with arbitrary dimension of the deformation space. The polynomial generators are determined and it is proven that the higher loop amplitudes are polynomials of a certain degree in the generators. Furthermore, the polynomial construction is generalized to solve the extension of the holomorphic anomaly equation to D-branes without deformation space. This method is applied to calculate higher loop amplitudes in numerous examples and the mathematical invariants are extracted. (orig.)

  7. Equilibrium partitioning of organic compounds to OASIS HLB®as a function of compound concentration, pH, temperature and salinity.

    Science.gov (United States)

    Jeong, Yoonah; Schäffer, Andreas; Smith, Kilian

    2017-05-01

    Oasis hydrophilic lipophilic balance ® (Oasis HLB) is commonly employed in solid phase extraction (SPE) of environmental contaminants and within polar organic chemical integrative passive samplers (POCIS). In this study batch experiments were carried out to evaluate the relative affinity of a range of relevant organic pollutants to Oasis HLB in aqueous systems. The influence of sorbate concentration, temperature, pH, and salinity on the equilibrium sorption was investigated. Equilibrium partition ratios (K D ) of 28 compounds were determined, ranging over three orders of magnitude from 1.16 × 10 3  L/kg (atenolol) to 1.07 × 10 6  L/kg (isoproturon). The Freundlich model was able to describe the equilibrium partitioning to Oasis HLB, and an analysis of the thermodynamic parameters revealed the spontaneous and exothermic nature of the partitioning process. Ionic strength had only a minor effect on the partitioning, whereas pH had a considerable effect but only for ionizable compounds. The results show that apolar interactions between the Oasis HLB and analyte mainly determine the equilibrium partitioning. These research findings can be used to optimize the application of SPE and POCIS for analyses of environmental contaminants even in complex mixtures. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. TOPOLOGY OF FUNCTIONAL CONNECTIVITY AND HUB DYNAMICS IN THE BETA BAND AS TEMPORAL PRIOR FOR NATURAL VISION IN THE HUMAN BRAIN.

    Science.gov (United States)

    Betti, Viviana; Corbetta, Maurizio; de Pasquale, Francesco; Wens, Vincent; Della Penna, Stefania

    2018-03-19

    Networks hubs represent points of convergence for the integration of information across many different nodes and systems. While a great deal is known on the topology of hub regions in the human brain, little is known about their temporal dynamics. Here, we examine the static and dynamic centrality of hub regions when measured in the absence of a task (rest) or during the observation of natural or synthetic visual stimuli. We used Magnetoencephalography (MEG) in humans (both sexes) to measure static and transient regional and network-level interaction in α and β band limited power (BLP) in three conditions: visual fixation (rest), viewing of movie clips (natural vision), and time-scrambled versions of the same clips (scrambled vision). As compared to rest, we observed in both movie conditions a robust decrement of α band BLP connectivity. Moreover, both movie conditions caused a significant reorganization of connections in the α band, especially between-networks. In contrast, β band BLP connectivity was remarkably similar between rest and natural vision. Not only the topology did not change, but the joint dynamics of hubs in a core network during natural vision was predicted by similar fluctuations in the resting state. We interpret these findings by suggesting that slow varying fluctuations of integration occurring in higher order regions in the β band may be a mechanism to anticipate and predict slow-varying temporal patterns of the visual environment. SIGNIFICANCE STATEMENT A fundamental question in neuroscience concerns the function of spontaneous brain connectivity. We test the hypothesis that topology of intrinsic brain connectivity and its dynamics might predict those observed during natural vision. Using MEG, we tracked the static and time-varying brain functional connectivity when observers were either fixating or watching different movie clips. The spatial distribution of connections and the dynamics of centrality of a set of regions were similar

  9. Worldsheet Realization of the Refined Topological String

    CERN Document Server

    Antoniadis, I; Hohenegger, S; Narain, K S; Assi, A Zein

    2013-01-01

    A worldsheet realization of the refined topological string is proposed in terms of physical string amplitudes that compute generalized N=2 F-terms of the form F_{g,n} W^{2g}Y^{2n} in the effective supergravity action. These terms involve the chiral Weyl superfield W and a superfield Y defined as an N=2 chiral projection of a particular anti-chiral T-bar vector multiplet. In Heterotic and Type I theories, obtained upon compactification on the six-dimensional manifold K3xT2, T is the usual K\\"ahler modulus of the T2 torus. These amplitudes are computed exactly at the one-loop level in string theory. They are shown to reproduce the correct perturbative part of the Nekrasov partition function in the field theory limit when expanded around an SU(2) enhancement point of the string moduli space. The two deformation parameters epsilon_- and epsilon_+ of the Omega-supergravity background are then identified with the constant field-strength backgrounds for the anti-self-dual graviphoton and self-dual gauge field of the...

  10. Large $N$ topologically twisted index: necklace quivers, dualities, and Sasaki-Einstein spaces

    CERN Document Server

    Hosseini, Seyed Morteza

    2016-01-01

    In this paper, we calculate the topological free energy for a number of ${\\mathcal N} \\geq 2$ Yang-Mills-Chern-Simons-matter theories at large $N$ and fixed Chern-Simons levels. The topological free energy is defined as the logarithm of the partition function of the theory on $S^2 \\times S^1$ with a topological A-twist along $S^2$ and can be reduced to a matrix integral by exploiting the localization technique. The theories of our interest are dual to a variety of Calabi-Yau four-fold singularities, including a product of two asymptotically locally Euclidean singularities and the cone over various well-known homogeneous Sasaki-Einstein seven-manifolds, $N^{0,1,0}$, $V^{5,2}$, and $Q^{1,1,1}$. We check that the large $N$ topological free energy can be matched for theories which are related by dualities, including mirror symmetry and $\\mathrm{SL}(2,\\mathbb{Z})$ duality.

  11. Black Holes, q-Deformed 2d Yang-Mills, and Non-perturbative Topological Strings

    Energy Technology Data Exchange (ETDEWEB)

    Aganagic, Mina; Ooguri, Hirosi; Saulina, Natalia; Vafa, Cumrun

    2005-01-28

    We count the number of bound states of BPS black holes on local Calabi-Yau three-folds involving a Riemann surface of genus g. We show that the corresponding gauge theory on the brane reduces to a q-deformed Yang-Mills theory on the Riemann surface. Following the recent connection between the black hole entropy and the topological string partition function, we find that for a large black hole charge N, up to corrections of O(e^-N), Z_BH is given as a sum of a square of chiral blocks, each of which corresponds to a specific D-brane amplitude. The leading chiral block, the vacuum block, corresponds to the closed topological string amplitudes. The sub-leading chiral blocks involve topological string amplitudes with D-brane insertions at 2g-2 points on the Riemann surface analogous to the Omega points in the large N 2d Yang-Mills theory. The finite N amplitude provides a non-perturbative definition of topological strings in these backgrounds. This also leads to a novel non-perturbative formulation of c=1 non-critical string at the self-dual radius.

  12. Entanglement entropy of gapped phase and topological order in three dimensions

    NARCIS (Netherlands)

    Grover, T.; Turner, A.M.; Vishwanath, A.

    2011-01-01

    We discuss entanglement entropy of gapped ground states in different dimensions, obtained on partitioning space into two regions. For trivial phases without topological order, we argue that the entanglement entropy may be obtained by integrating an ‘entropy density’ over the partition boundary that

  13. Basic algebraic topology and its applications

    CERN Document Server

    Adhikari, Mahima Ranjan

    2016-01-01

    This book provides an accessible introduction to algebraic topology, a field at the intersection of topology, geometry and algebra, together with its applications. Moreover, it covers several related topics that are in fact important in the overall scheme of algebraic topology. Comprising eighteen chapters and two appendices, the book integrates various concepts of algebraic topology, supported by examples, exercises, applications and historical notes. Primarily intended as a textbook, the book offers a valuable resource for undergraduate, postgraduate and advanced mathematics students alike. Focusing more on the geometric than on algebraic aspects of the subject, as well as its natural development, the book conveys the basic language of modern algebraic topology by exploring homotopy, homology and cohomology theories, and examines a variety of spaces: spheres, projective spaces, classical groups and their quotient spaces, function spaces, polyhedra, topological groups, Lie groups and cell complexes, etc. T...

  14. An improved genetic algorithm with dynamic topology

    International Nuclear Information System (INIS)

    Cai Kai-Quan; Tang Yan-Wu; Zhang Xue-Jun; Guan Xiang-Min

    2016-01-01

    The genetic algorithm (GA) is a nature-inspired evolutionary algorithm to find optima in search space via the interaction of individuals. Recently, researchers demonstrated that the interaction topology plays an important role in information exchange among individuals of evolutionary algorithm. In this paper, we investigate the effect of different network topologies adopted to represent the interaction structures. It is found that GA with a high-density topology ends up more likely with an unsatisfactory solution, contrarily, a low-density topology can impede convergence. Consequently, we propose an improved GA with dynamic topology, named DT-GA, in which the topology structure varies dynamically along with the fitness evolution. Several experiments executed with 15 well-known test functions have illustrated that DT-GA outperforms other test GAs for making a balance of convergence speed and optimum quality. Our work may have implications in the combination of complex networks and computational intelligence. (paper)

  15. Phylogenetic relationships in Asarum: Effect of data partitioning and a revised classification.

    Science.gov (United States)

    Sinn, Brandon T; Kelly, Lawrence M; Freudenstein, John V

    2015-05-01

    Generic boundaries and infrageneric relationships among the charismatic temperate magnoliid Asarum sensu lato (Aristolochiaceae) have long been uncertain. Previous molecular phylogenetic analyses used either plastid or nuclear loci alone and varied greatly in their taxonomic implications for the genus. We analyzed additional molecular markers from the nuclear and plastid genomes, reevaluated the possibility of a derived loss of autonomous self-pollination, and investigated the topological effects of matrix-partitioning-scheme choice. We sequenced seven plastid regions and the nuclear ITS1-ITS2 region of 58 individuals representing all previously recognized Asarum s.l. segregate genera and the monotypic genus Saruma. Matrices were partitioned using common a priori partitioning schemes and PartitionFinder. Topologies that were recovered using a priori partitioning of matrices differed from those recovered using a PartitionFinder-selected scheme, and by analysis method. We recovered six monophyletic groups that we circumscribed into three subgenera and six sections. Putative fungal mimic characters served as synapomorphies only for subgenus Heterotropa. Subgenus Geotaenium, a new subgenus, was recovered as sister to the remainder of Asarum by ML analyses of highly partitioned datasets. Section Longistylis, also newly named, is sister to section Hexastylis. Our analyses do not unambiguously support a single origin for all fungal-mimicry characters. Topologies recovered through the analysis of PartitionFinder-optimized matrices can differ drastically from those inferred from a priori partitioned matrices, and by analytical method. We recommend that investigators evaluate the topological effects of matrix partitioning using multiple methods of phylogenetic reconstruction. © 2015 Botanical Society of America, Inc.

  16. Topological strings from quantum mechanics

    Energy Technology Data Exchange (ETDEWEB)

    Grassi, Alba; Marino, Marcos [Geneve Univ. (Switzerland). Dept. de Physique Theorique et Section de Mathematique; Hatsuda, Yasuyuki [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany). Theory Group

    2014-12-15

    We propose a general correspondence which associates a non-perturbative quantum-mechanical operator to a toric Calabi-Yau manifold, and we conjecture an explicit formula for its spectral determinant in terms of an M-theoretic version of the topological string free energy. As a consequence, we derive an exact quantization condition for the operator spectrum, in terms of the vanishing of a generalized θ function. The perturbative part of this quantization condition is given by the Nekrasov-Shatashvili limit of the refined topological string, but there are non-perturbative corrections determined by the conventional topological string. We analyze in detail the cases of local P{sup 2}, local P{sup 1} x P{sup 1} and local F{sub 1}. In all these cases, the predictions for the spectrum agree with the existing numerical results. We also show explicitly that our conjectured spectral determinant leads to the correct spectral traces of the corresponding operators, which are closely related to topological string theory at orbifold points. Physically, our results provide a Fermi gas picture of topological strings on toric Calabi-Yau manifolds, which is fully non-perturbative and background independent. They also suggest the existence of an underlying theory of M2 branes behind this formulation. Mathematically, our results lead to precise, surprising conjectures relating the spectral theory of functional difference operators to enumerative geometry.

  17. Topological strings from quantum mechanics

    International Nuclear Information System (INIS)

    Grassi, Alba; Marino, Marcos; Hatsuda, Yasuyuki

    2014-12-01

    We propose a general correspondence which associates a non-perturbative quantum-mechanical operator to a toric Calabi-Yau manifold, and we conjecture an explicit formula for its spectral determinant in terms of an M-theoretic version of the topological string free energy. As a consequence, we derive an exact quantization condition for the operator spectrum, in terms of the vanishing of a generalized θ function. The perturbative part of this quantization condition is given by the Nekrasov-Shatashvili limit of the refined topological string, but there are non-perturbative corrections determined by the conventional topological string. We analyze in detail the cases of local P 2 , local P 1 x P 1 and local F 1 . In all these cases, the predictions for the spectrum agree with the existing numerical results. We also show explicitly that our conjectured spectral determinant leads to the correct spectral traces of the corresponding operators, which are closely related to topological string theory at orbifold points. Physically, our results provide a Fermi gas picture of topological strings on toric Calabi-Yau manifolds, which is fully non-perturbative and background independent. They also suggest the existence of an underlying theory of M2 branes behind this formulation. Mathematically, our results lead to precise, surprising conjectures relating the spectral theory of functional difference operators to enumerative geometry.

  18. Plasmid and chromosome partitioning: surprises from phylogeny

    DEFF Research Database (Denmark)

    Gerdes, Kenn; Møller-Jensen, Jakob; Bugge Jensen, Rasmus

    2000-01-01

    Plasmids encode partitioning genes (par) that are required for faithful plasmid segregation at cell division. Initially, par loci were identified on plasmids, but more recently they were also found on bacterial chromosomes. We present here a phylogenetic analysis of par loci from plasmids...... and chromosomes from prokaryotic organisms. All known plasmid-encoded par loci specify three components: a cis-acting centromere-like site and two trans-acting proteins that form a nucleoprotein complex at the centromere (i.e. the partition complex). The proteins are encoded by two genes in an operon...... that is autoregulated by the par-encoded proteins. In all cases, the upstream gene encodes an ATPase that is essential for partitioning. Recent cytological analyses indicate that the ATPases function as adaptors between a host-encoded component and the partition complex and thereby tether plasmids and chromosomal...

  19. The Benefits of Adaptive Partitioning for Parallel AMR Applications

    Energy Technology Data Exchange (ETDEWEB)

    Steensland, Johan [Sandia National Lab. (SNL-CA), Livermore, CA (United States). Advanced Software Research and Development

    2008-07-01

    Parallel adaptive mesh refinement methods potentially lead to realistic modeling of complex three-dimensional physical phenomena. However, the dynamics inherent in these methods present significant challenges in data partitioning and load balancing. Significant human resources, including time, effort, experience, and knowledge, are required for determining the optimal partitioning technique for each new simulation. In reality, scientists resort to using the on-board partitioner of the computational framework, or to using the partitioning industry standard, ParMetis. Adaptive partitioning refers to repeatedly selecting, configuring and invoking the optimal partitioning technique at run-time, based on the current state of the computer and application. In theory, adaptive partitioning automatically delivers superior performance and eliminates the need for repeatedly spending valuable human resources for determining the optimal static partitioning technique. In practice, however, enabling frameworks are non-existent due to the inherent significant inter-disciplinary research challenges. This paper presents a study of a simple implementation of adaptive partitioning and discusses implied potential benefits from the perspective of common groups of users within computational science. The study is based on a large set of data derived from experiments including six real-life, multi-time-step adaptive applications from various scientific domains, five complementing and fundamentally different partitioning techniques, a large set of parameters corresponding to a wide spectrum of computing environments, and a flexible cost function that considers the relative impact of multiple partitioning metrics and diverse partitioning objectives. The results show that even a simple implementation of adaptive partitioning can automatically generate results statistically equivalent to the best static partitioning. Thus, it is possible to effectively eliminate the problem of determining the

  20. Topological Model on the Inductive Effect in Alkyl Halides Using Local Quantum Similarity and Reactivity Descriptors in the Density Functional Theory

    Directory of Open Access Journals (Sweden)

    Alejandro Morales-Bayuelo

    2014-01-01

    Full Text Available We present a topological analysis to the inductive effect through steric and electrostatic scales of quantitative convergence. Using the molecular similarity field based in the local guantum similarity (LQS with the Topo-Geometrical Superposition Algorithm (TGSA alignment method and the chemical reactivity in the density function theory (DFT context, all calculations were carried out with Amsterdam Density Functional (ADF code, using the gradient generalized approximation (GGA and local exchange correlations PW91, in order to characterize the electronic effect by atomic size in the halogens group using a standard Slater-type-orbital basis set. In addition, in this study we introduced news molecular bonding relationships in the inductive effect and the nature of the polar character in the C–H bond taking into account the global and local reactivity descriptors such as chemical potential, hardness, electrophilicity, and Fukui functions, respectively. These descriptors are used to find new alternative considerations on the inductive effect, unlike to the binding energy and dipole moment performed in the traditional organic chemical.

  1. Emerging Trends in Topological Insulators and Topological ...

    Indian Academy of Sciences (India)

    Emerging Trends in Topological Insulators and. Topological Superconductors. Arijit Saha and Arun M Jayannavar. Arijit Saha is a Reader-F at the Institute of Physics,. Bhubaneswar. His research interest lies broadly in the areas of mesoscopic physics and strongly correlated electrons. Arun M Jayannavar is a.

  2. A discrete transition zone organizes the topological and regulatory autonomy of the adjacent tfap2c and bmp7 genes.

    Directory of Open Access Journals (Sweden)

    Taro Tsujimura

    2015-01-01

    Full Text Available Despite the well-documented role of remote enhancers in controlling developmental gene expression, the mechanisms that allocate enhancers to genes are poorly characterized. Here, we investigate the cis-regulatory organization of the locus containing the Tfap2c and Bmp7 genes in vivo, using a series of engineered chromosomal rearrangements. While these genes lie adjacent to one another, we demonstrate that they are independently regulated by distinct sets of enhancers, which in turn define non-overlapping regulatory domains. Chromosome conformation capture experiments reveal a corresponding partition of the locus in two distinct structural entities, demarcated by a discrete transition zone. The impact of engineered chromosomal rearrangements on the topology of the locus and the resultant gene expression changes indicate that this transition zone functionally organizes the structural partition of the locus, thereby defining enhancer-target gene allocation. This partition is, however, not absolute: we show that it allows competing interactions across it that may be non-productive for the competing gene, but modulate expression of the competed one. Altogether, these data highlight the prime role of the topological organization of the genome in long-distance regulation of gene expression.

  3. Book Review: Computational Topology

    DEFF Research Database (Denmark)

    Raussen, Martin

    2011-01-01

    Computational Topology by Herbert Edelsbrunner and John L. Harer. American Matheamtical Society, 2010 - ISBN 978-0-8218-4925-5......Computational Topology by Herbert Edelsbrunner and John L. Harer. American Matheamtical Society, 2010 - ISBN 978-0-8218-4925-5...

  4. Topological methods in Euclidean spaces

    CERN Document Server

    Naber, Gregory L

    2000-01-01

    Extensive development of a number of topics central to topology, including elementary combinatorial techniques, Sperner's Lemma, the Brouwer Fixed Point Theorem, homotopy theory and the fundamental group, simplicial homology theory, the Hopf Trace Theorem, the Lefschetz Fixed Point Theorem, the Stone-Weierstrass Theorem, and Morse functions. Includes new section of solutions to selected problems.

  5. On bottleneck partitioning k-ary n-cubes

    Science.gov (United States)

    Nicol, David M.; Mao, Weizhen

    1994-01-01

    Graph partitioning is a topic of extensive interest, with applications to parallel processing. In this context graph nodes typically represent computation, and edges represent communication. One seeks to distribute the workload by partitioning the graph so that every processor has approximately the same workload, and the communication cost (measured as a function of edges exposed by the partition) is minimized. Measures of partition quality vary; in this paper we consider a processor's cost to be the sum of its computation and communication costs, and consider the cost of a partition to be the bottleneck, or maximal processor cost induced by the partition. For a general graph the problem of finding an optimal partitioning is intractable. In this paper we restrict our attention to the class of k-art n-cube graphs with uniformly weighted nodes. Given mild restrictions on the node weight and number of processors, we identify partitions yielding the smallest bottleneck. We also demonstrate by example that some restrictions are necessary for the partitions we identify to be optimal. In particular, there exist cases where partitions that evenly partition nodes need not be optimal.

  6. Intrinsic topological superfluidity - fluctuations and response

    Science.gov (United States)

    Levin, K.; Wu, Chien-Te; Anderson, Brandon; Boyack, Rufus

    Recent interest in topological superconductivity is based primarily on exploiting proximity effects to obtain this important phase. However, in cold gases it is possible to contemplate ``intrinsic'' topological superfluidity produced with a synthetic spin-orbit coupling and Zeeman field. It is important for such future experiments to establish how low in temperature one needs to go to reach the ordered phase. Similarly, it will be helpful to have a probe of the normal (pseudogap) phase to determine if the ultimate superfluid order will be topological or trivial. In this talk, we address these issues by considering fluctuation effects in such a superfluid, and calculate the critical transition temperature and response functions. We see qualitative signatures of topological superfluidity in spin and charge response functions. We also explore the suppression of superfluidity due to fluctuations, and importantly find that the temperature scales necessary to reach topological superfluidity are reasonably accessible

  7. Elementary concepts of topology

    CERN Document Server

    Alexandroff, Paul

    1961-01-01

    Concise work presents topological concepts in clear, elementary fashion without sacrificing their profundity or exactness. Author proceeds from basics of set-theoretic topology, through topological theorems and questions based on concept of the algebraic complex, to the concept of Betti groups.

  8. Free Boolean Topological Groups

    Directory of Open Access Journals (Sweden)

    Ol’ga Sipacheva

    2015-11-01

    Full Text Available Known and new results on free Boolean topological groups are collected. An account of the properties that these groups share with free or free Abelian topological groups and properties specific to free Boolean groups is given. Special emphasis is placed on the application of set-theoretic methods to the study of Boolean topological groups.

  9. Tuning Gas Adsorption Properties of Zeolite-like Supramolecular Assemblies with gis Topology via Functionalization of Isoreticular Metal–Organic Squares

    KAUST Repository

    Wang, Shuang

    2017-07-11

    A strategy based on metal-ligand directed assembly of metal-organic squares (MOSs), built-up from four-membered ring (4MR) secondary building units (SBUs), has been employed for the design and construction of isoreticular zeolite-like supramolecular assemblies (ZSAs). Four porous Co-based ZSAs having the same underlying gis topology, but differing only with respect to the capping and bridging linkers, were successfully isolated and fully characterized. In this series, each MOS in ZSA-3-ZSA-6 possess an ideal square geometry and is connected to four neighboring MOS via a total of 16 hydrogen bonds to give a 3-periodic porous network.To systematically assess the effect of the pore system (size and functionality) on the gas adsorption properties, we evaluated the MOSs for their affinity for different probe molecules such as CO2 and light hydrocarbons. ZSA-3-ZSA-6 showed high thermal stability (up to 300 °C) and was proven highly porous as evidenced by gas adsorption studies. Notably, alkyl-functionalized MOSs were found to offer potential for selective separation of CO2, C3H6, and C3H8 from CH4 and H2 containing gas stream, such as natural gas and refinery-off gases.

  10. Tuning Gas Adsorption Properties of Zeolite-like Supramolecular Assemblies with gis Topology via Functionalization of Isoreticular Metal-Organic Squares.

    Science.gov (United States)

    Wang, Shuang; Belmabkhout, Youssef; Cairns, Amy J; Li, Guanghua; Huo, Qisheng; Liu, Yunling; Eddaoudi, Mohamed

    2017-10-04

    A strategy based on metal-ligand directed assembly of metal-organic squares (MOSs), built-up from four-membered ring (4MR) secondary building units (SBUs), has been employed for the design and construction of isoreticular zeolite-like supramolecular assemblies (ZSAs). Four porous Co-based ZSAs having the same underlying gis topology, but differing only with respect to the capping and bridging linkers, were successfully isolated and fully characterized. In this series, each MOS in ZSA-3-ZSA-6 possess an ideal square geometry and is connected to four neighboring MOS via a total of 16 hydrogen bonds to give a 3-periodic porous network.To systematically assess the effect of the pore system (size and functionality) on the gas adsorption properties, we evaluated the MOSs for their affinity for different probe molecules such as CO 2 and light hydrocarbons. ZSA-3-ZSA-6 showed high thermal stability (up to 300 °C) and was proven highly porous as evidenced by gas adsorption studies. Notably, alkyl-functionalized MOSs were found to offer potential for selective separation of CO 2 , C 3 H 6 , and C 3 H 8 from CH 4 and H 2 containing gas stream, such as natural gas and refinery-off gases.

  11. Crystallographic topology and its applications

    Energy Technology Data Exchange (ETDEWEB)

    Johnson, C.K.; Burnett, M.N. [Oak Ridge National Lab., TN (United States); Dunbar, W.D. [Simon`s Rock Coll., Great Barrington, MA (United States). Div. of Natural Sciences and Mathematics

    1996-10-01

    Geometric topology and structural crystallography concepts are combined to define a new area we call Structural Crystallographic Topology, which may be of interest to both crystallographers and mathematicians. In this paper, we represent crystallographic symmetry groups by orbifolds and crystal structures by Morse - functions. The Morse function uses mildly overlapping Gaussian thermal-motion probability density functions centered on atomic sites to form a critical net with peak, pass, pale, and pit critical points joined into a graph by density gradient-flow separatrices. Critical net crystal structure drawings can be made with the ORTEP-III graphics pro- An orbifold consists of an underlying topological space with an embedded singular set that represents the Wyckoff sites of the crystallographic group. An orbifold for a point group, plane group, or space group is derived by gluing together equivalent edges or faces of a crystallographic asymmetric unit. The critical-net-on-orbifold model incorporates the classical invariant lattice complexes of crystallography and allows concise quotient-space topological illustrations to be drawn without the repetition that is characteristic of normal crystal structure drawings.

  12. Topological antiferromagnetic spintronics

    Science.gov (United States)

    Šmejkal, Libor; Mokrousov, Yuriy; Yan, Binghai; MacDonald, Allan H.

    2018-03-01

    The recent demonstrations of electrical manipulation and detection of antiferromagnetic spins have opened up a new chapter in the story of spintronics. Here, we review the emerging research field that is exploring the links between antiferromagnetic spintronics and topological structures in real and momentum space. Active topics include proposals to realize Majorana fermions in antiferromagnetic topological superconductors, to control topological protection and Dirac points by manipulating antiferromagnetic order parameters, and to exploit the anomalous and topological Hall effects of zero-net-moment antiferromagnets. We explain the basic concepts behind these proposals, and discuss potential applications of topological antiferromagnetic spintronics.

  13. Axiomatic method of partitions in the theory of Noebeling spaces. I. Improvement of partition connectivity

    International Nuclear Information System (INIS)

    Ageev, S M

    2007-01-01

    The Noebeling space N k 2k+1 , a k-dimensional analogue of the Hilbert space, is considered; this is a topologically complete separable (that is, Polish) k-dimensional absolute extensor in dimension k (that is, AE(k)) and a strongly k-universal space. The conjecture that the above-listed properties characterize the Noebeling space N k 2k+1 in an arbitrary finite dimension k is proved. In the first part of the paper a full axiom system of the Noebeling spaces is presented and the problem of the improvement of a partition connectivity is solved on its basis. Bibliography: 29 titles.

  14. Integral functionals that are continuous with respect to the weak topology on W-0(1,p)(Omega)

    Czech Academy of Sciences Publication Activity Database

    Černý, R.; Hencl, S.; Kolář, Jan

    2009-01-01

    Roč. 71, 7-8 (2009), s. 2753-2763 ISSN 0362-546X R&D Projects: GA ČR GA201/06/0018 Institutional research plan: CEZ:AV0Z10190503 Keywords : weak continuity * nonlinear integral functional * Sobolev spaces * linearity Subject RIV: BA - General Mathematics Impact factor: 1.487, year: 2009

  15. The Cardy limit of the topologically twisted index and black strings in AdS{sub 5}

    Energy Technology Data Exchange (ETDEWEB)

    Hosseini, Seyed Morteza; Nedelin, Anton; Zaffaroni, Alberto [Dipartimento di Fisica, Università di Milano-Bicocca,I-20126 Milano (Italy); INFN, Sezione di Milano-Bicocca,I-20126 Milano (Italy)

    2017-04-04

    We evaluate the topologically twisted index of a general four-dimensional N=1 gauge theory in the “high-temperature' limit. The index is the partition function for N=1 theories on S{sup 2}×T{sup 2}, with a partial topological twist along S{sup 2}, in the presence of background magnetic fluxes and fugacities for the global symmetries. We show that the logarithm of the index is proportional to the conformal anomaly coefficient of the two-dimensional N=(0,2) SCFTs obtained from the compactification on S{sup 2}. We also present a universal formula for extracting the index from the four-dimensional conformal anomaly coefficient and its derivatives. We give examples based on theories whose holographic duals are black strings in type IIB backgrounds AdS{sub 5}×SE{sub 5}, where SE{sub 5} are five-dimensional Sasaki-Einstein spaces.

  16. Network topology analysis.

    Energy Technology Data Exchange (ETDEWEB)

    Kalb, Jeffrey L.; Lee, David S.

    2008-01-01

    Emerging high-bandwidth, low-latency network technology has made network-based architectures both feasible and potentially desirable for use in satellite payload architectures. The selection of network topology is a critical component when developing these multi-node or multi-point architectures. This study examines network topologies and their effect on overall network performance. Numerous topologies were reviewed against a number of performance, reliability, and cost metrics. This document identifies a handful of good network topologies for satellite applications and the metrics used to justify them as such. Since often multiple topologies will meet the requirements of the satellite payload architecture under development, the choice of network topology is not easy, and in the end the choice of topology is influenced by both the design characteristics and requirements of the overall system and the experience of the developer.

  17. Real Topological Cyclic Homology

    DEFF Research Database (Denmark)

    Høgenhaven, Amalie

    The main topics of this thesis are real topological Hochschild homology and real topological cyclic homology. If a ring or a ring spectrum is equipped with an anti-involution, then it induces additional structure on the topological Hochschild homology spectrum. The group O(2) acts on the spectrum......, where O(2) is the semi-direct product of T, the multiplicative group of complex number of modulus 1, by the group G=Gal(C/R). We refer to this O(2)-spectrum as the real topological Hochschild homology. This generalization leads to a G-equivariant version of topological cyclic homology, which we call...... real topological cyclic homology. The first part of the thesis computes the G-equivariant homotopy type of the real topological cyclic homology of spherical group rings at a prime p with anti-involution induced by taking inverses in the group. The second part of the thesis investigates the derived G...

  18. Triple Point Topological Metals

    Directory of Open Access Journals (Sweden)

    Ziming Zhu

    2016-07-01

    Full Text Available Topologically protected fermionic quasiparticles appear in metals, where band degeneracies occur at the Fermi level, dictated by the band structure topology. While in some metals these quasiparticles are direct analogues of elementary fermionic particles of the relativistic quantum field theory, other metals can have symmetries that give rise to quasiparticles, fundamentally different from those known in high-energy physics. Here, we report on a new type of topological quasiparticles—triple point fermions—realized in metals with symmorphic crystal structure, which host crossings of three bands in the vicinity of the Fermi level protected by point group symmetries. We find two topologically different types of triple point fermions, both distinct from any other topological quasiparticles reported to date. We provide examples of existing materials that host triple point fermions of both types and discuss a variety of physical phenomena associated with these quasiparticles, such as the occurrence of topological surface Fermi arcs, transport anomalies, and topological Lifshitz transitions.

  19. Photonic Floquet topological insulators

    Science.gov (United States)

    Rechtsman, Mikael C.; Zeuner, Julia M.; Plotnik, Yonatan; Lumer, Yaakov; Podolsky, Daniel; Dreisow, Felix; Nolte, Stefan; Segev, Mordechai; Szameit, Alexander

    2013-09-01

    Topological insulators are a new phase of matter, with the striking property that conduction of electrons occurs only on the surface. In two dimensions, surface electrons in topological insulators do not scatter despite defects and disorder, providing robustness akin to superconductors. Topological insulators are predicted to have wideranging applications in fault-tolerant quantum computing and spintronics. Recently, large theoretical efforts were directed towards achieving topological insulation for electromagnetic waves. One-dimensional systems with topological edge states have been demonstrated, but these states are zero-dimensional, and therefore exhibit no transport properties. Topological protection of microwaves has been observed using a mechanism similar to the quantum Hall effect, by placing a gyromagnetic photonic crystal in an external magnetic field. However, since magnetic effects are very weak at optical frequencies, realizing photonic topological insulators with scatterfree edge states requires a fundamentally different mechanism - one that is free of magnetic fields. Recently, a number of proposals for photonic topological transport have been put forward. Specifically, one suggested temporally modulating a photonic crystal, thus breaking time-reversal symmetry and inducing one-way edge states. This is in the spirit of the proposed Floquet topological insulators, where temporal variations in solidstate systems induce topological edge states. Here, we propose and experimentally demonstrate the first external field-free photonic topological insulator with scatter-free edge transport: a photonic lattice exhibiting topologically protected transport of visible light on the lattice edges. Our system is composed of an array of evanescently coupled helical waveguides arranged in a graphene-like honeycomb lattice. Paraxial diffraction of light is described by a Schrödinger equation where the propagation coordinate acts as `time'. Thus the waveguides

  20. Composition and partition functions of partially ionized hydrogen plasma in Non-Local Thermal Equilibrium (Non-LThE) and Non-Local Chemical Equilibrium (Non-LChE)

    International Nuclear Information System (INIS)

    Chen Kuan; Eddy, T.L.

    1993-01-01

    A GTME (Generalized MultiThermodynamic Equilibrium) plasma model is developed for plasmas in both Non-LThE (Non-Local Thermal Equilibrium) and Non-LChE (Non-Local Chemical Equilibrium). The model uses multitemperatures for thermal nonequilibrium and non-zero chemical affinities as a measure of the deviation from chemical equilibrium. The plasma is treated as an ideal gas with the Debye-Hueckel approximation employed for pressure correction. The proration method is used when the cutoff energy level is between two discrete levels. The composition and internal partition functions of a hydrogen plasma are presented for electron temperatures ranging from 5000 to 35000 K and pressures from 0.1 to 1000 kPa. Number densities of 7 different species of hydrogen plasma and internal partition functions of different energy modes (rotational, vibrational, and electronic excitation) are computed for three affinity values. The results differ from other plasma properties in that they 1) are not based on equilibrium properties; and 2) are expressed as a function of different energy distribution parameters (temperatures) within each energy mode of each species as appropriate. The computed number densities and partition functions are applicable to calculating the thermodynamic, transport, and radiation properties of a hydrogen plasma not in thermal and chemical equilibria. The nonequilibrium plasma model and plasma compositions presented in this paper are very useful to the diagnosis of high-speed and/or low-pressure plasma flows in which the assumptions of local thermal and chemical equilibrium are invalid. (orig.)

  1. Characterization of convergence in fuzzy topological spaces

    Directory of Open Access Journals (Sweden)

    E. Lowen

    1985-01-01

    Full Text Available In a fuzzy topology on a set X, the limit of a prefilter (i.e. a filter in the lattice [0,1]X is calculated from the fuzzy closure. In this way convergence is derived from a fuzzy topology. In our paper we start with any rule “lim” which to any prefilter on X assigns, a function lim∈[0,1]X. We give necessary and sufficient conditions for the function →lim in order that it can be derived from a fuzzy topology.

  2. Bipartite Topology of Treponema pallidum Repeat Proteins C/D and I: OUTER MEMBRANE INSERTION, TRIMERIZATION, AND PORIN FUNCTION REQUIRE A C-TERMINAL β-BARREL DOMAIN.

    Science.gov (United States)

    Anand, Arvind; LeDoyt, Morgan; Karanian, Carson; Luthra, Amit; Koszelak-Rosenblum, Mary; Malkowski, Michael G; Puthenveetil, Robbins; Vinogradova, Olga; Radolf, Justin D

    2015-05-08

    We previously identified Treponema pallidum repeat proteins TprC/D, TprF, and TprI as candidate outer membrane proteins (OMPs) and subsequently demonstrated that TprC is not only a rare OMP but also forms trimers and has porin activity. We also reported that TprC contains N- and C-terminal domains (TprC(N) and TprC(C)) orthologous to regions in the major outer sheath protein (MOSP(N) and MOSP(C)) of Treponema denticola and that TprC(C) is solely responsible for β-barrel formation, trimerization, and porin function by the full-length protein. Herein, we show that TprI also possesses bipartite architecture, trimeric structure, and porin function and that the MOSP(C)-like domains of native TprC and TprI are surface-exposed in T. pallidum, whereas their MOSP(N)-like domains are tethered within the periplasm. TprF, which does not contain a MOSP(C)-like domain, lacks amphiphilicity and porin activity, adopts an extended inflexible structure, and, in T. pallidum, is tightly bound to the protoplasmic cylinder. By thermal denaturation, the MOSP(N) and MOSP(C)-like domains of TprC and TprI are highly thermostable, endowing the full-length proteins with impressive conformational stability. When expressed in Escherichia coli with PelB signal sequences, TprC and TprI localize to the outer membrane, adopting bipartite topologies, whereas TprF is periplasmic. We propose that the MOSP(N)-like domains enhance the structural integrity of the cell envelope by anchoring the β-barrels within the periplasm. In addition to being bona fide T. pallidum rare outer membrane proteins, TprC/D and TprI represent a new class of dual function, bipartite bacterial OMP. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

  3. Boundary Hamiltonian Theory for Gapped Topological Orders

    Science.gov (United States)

    Hu, Yuting; Wan, Yidun; Wu, Yong-Shi

    2017-06-01

    We report our systematic construction of the lattice Hamiltonian model of topological orders on open surfaces, with explicit boundary terms. We do this mainly for the Levin-Wen string-net model. The full Hamiltonian in our approach yields a topologically protected, gapped energy spectrum, with the corresponding wave functions robust under topology-preserving transformations of the lattice of the system. We explicitly present the wavefunctions of the ground states and boundary elementary excitations. The creation and hopping operators of boundary quasi-particles are constructed. It is found that given a bulk topological order, the gapped boundary conditions are classified by Frobenius algebras in its input data. Emergent topological properties of the ground states and boundary excitations are characterized by (bi-) modules over Frobenius algebras.

  4. Topological Changes in the Brain Network Induced by the Training on a Piloting Task: An EEG-Based Functional Connectome Approach.

    Science.gov (United States)

    Taya, Fumihiko; Sun, Yu; Babiloni, Fabio; Thakor, Nitish V; Bezerianos, Anastasios

    2018-02-01

    Training is a process to improve one's capacity or performance through the acquisition of knowledge or skills specific for the trained task. Although behavioral performance would be improved monotonically and reach a plateau as the learning progresses, neurophysiological signal shows different patterns like a U-shaped curve. One possible account for the phenomenon is that the brain first works hard to learn how to use task-relevant areas, followed by improvement in the efficiency derived from disuse of irrelevant brain areas for good task performance. Here, we hypothesize that topology of the brain network would show U-shaped changes during the training on a piloting task. To test this hypothesis, graph theoretical metrics quantifying global and local characteristics of the network were investigated. Our results demonstrated that global information transfer efficiency of the functional network in a high frequency band first decreased and then increased during the training while other measures such as local information transfer efficiency and small-worldness showed opposite patterns. Additionally, the centrality of nodes changed due to the training at frontal and temporal sites. Our results suggest network metrics can be used as biomarkers for quantifying the training progress, which can be differed depending on network efficiency of the brain.

  5. Goldbach Partitions and Sequences

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 19; Issue 11. Goldbach Partitions and Sequences. Subhash Kak. General Article Volume 19 Issue 11 November 2014 pp 1028-1037. Fulltext. Click here to view fulltext PDF. Permanent link: http://www.ias.ac.in/article/fulltext/reso/019/11/1028-1037 ...

  6. Dissociative contributions of the anterior cingulate cortex to apathy and depression: Topological evidence from resting-state functional MRI.

    Science.gov (United States)

    Onoda, Keiichi; Yamaguchi, Shuhei

    2015-10-01

    Apathy is defined as a mental state characterized by a lack of goal-directed behavior. However, the underlying mechanisms of apathy remain to be fully understood. Apathy shares certain symptoms with depression and both these affective disorders are known to be associated with dysfunctions of the frontal cortex-basal ganglia circuits. It is expected that clarifying differences in neural mechanisms between the two conditions would lead to an improved understanding of apathy. The present study was designed to investigate whether apathy and depression depend on different network properties of the frontal cortex-basal ganglia circuits, by using resting state fMRI. Resting-state fMRI measurement and neuropsychological testing were conducted on middle-aged and older adults (N=392). Based on graph theory, we estimated nodal efficiency (functional integration), local efficiency (functional segregation), and betweenness centrality. We conducted multiple regression analyses for the network parameters using age, sex, apathy, and depression as predictors. Interestingly, results indicated that the anterior cingulate cortex showed lower nodal efficiency, local efficiency, and betweenness centrality in apathy, whereas in depression, it showed higher nodal efficiency and betweenness centrality. The anterior cingulate cortex constitutes the so-called "salience network", which detects salient experiences. Our results indicate that apathy is characterized by decreased salience-related processing in the anterior cingulate cortex, whereas depression is characterized by increased salience-related processing. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

  7. Topological phases of topological-insulator thin films

    Science.gov (United States)

    Asmar, Mahmoud M.; Sheehy, Daniel E.; Vekhter, Ilya

    2018-02-01

    We study the properties of a thin film of topological insulator material. We treat the coupling between helical states at opposite surfaces of the film in the properly-adapted tunneling approximation, and show that the tunneling matrix element oscillates as a function of both the film thickness and the momentum in the plane of the film for Bi2Se3 and Bi2Te3 . As a result, while the magnitude of the matrix element at the center of the surface Brillouin zone gives the gap in the energy spectrum, the sign of the matrix element uniquely determines the topological properties of the film, as demonstrated by explicitly computing the pseudospin textures and the Chern number. We find a sequence of transitions between topological and nontopological phases, separated by semimetallic states, as the film thickness varies. In the topological phase, the edge states of the film always exist but only carry a spin current if the edge potentials break particle-hole symmetry. The edge states decay very slowly away from the boundary in Bi2Se3 , making Bi2Te3 , where this scale is shorter, a more promising candidate for the observation of these states. Our results hold for free-standing films as well as heterostructures with large-gap insulators.

  8. Synchronization in complex networks with switching topology

    International Nuclear Information System (INIS)

    Wang, Lei; Wang, Qing-guo

    2011-01-01

    This Letter investigates synchronization issues of complex dynamical networks with switching topology. By constructing a common Lyapunov function, we show that local and global synchronization for a linearly coupled network with switching topology can be evaluated by the time average of second smallest eigenvalues corresponding to the Laplacians of switching topology. This result is quite powerful and can be further used to explore various switching cases for complex dynamical networks. Numerical simulations illustrate the effectiveness of the obtained results in the end. -- Highlights: → Synchronization of complex networks with switching topology is investigated. → A common Lyapunov function is established for synchronization of switching network. → The common Lyapunov function is not necessary to monotonically decrease with time. → Synchronization is determined by the second smallest eigenvalue of its Laplacian. → Synchronization criterion can be used to investigate various switching cases.

  9. Ordered groups and topology

    CERN Document Server

    Clay, Adam

    2016-01-01

    This book deals with the connections between topology and ordered groups. It begins with a self-contained introduction to orderable groups and from there explores the interactions between orderability and objects in low-dimensional topology, such as knot theory, braid groups, and 3-manifolds, as well as groups of homeomorphisms and other topological structures. The book also addresses recent applications of orderability in the studies of codimension-one foliations and Heegaard-Floer homology. The use of topological methods in proving algebraic results is another feature of the book. The book was written to serve both as a textbook for graduate students, containing many exercises, and as a reference for researchers in topology, algebra, and dynamical systems. A basic background in group theory and topology is the only prerequisite for the reader.

  10. Field-theory representation of gauge-gravity symmetry-protected topological invariants, group cohomology, and beyond.

    Science.gov (United States)

    Wang, Juven C; Gu, Zheng-Cheng; Wen, Xiao-Gang

    2015-01-23

    The challenge of identifying symmetry-protected topological states (SPTs) is due to their lack of symmetry-breaking order parameters and intrinsic topological orders. For this reason, it is impossible to formulate SPTs under Ginzburg-Landau theory or probe SPTs via fractionalized bulk excitations and topology-dependent ground state degeneracy. However, the partition functions from path integrals with various symmetry twists are universal SPT invariants, fully characterizing SPTs. In this work, we use gauge fields to represent those symmetry twists in closed spacetimes of any dimensionality and arbitrary topology. This allows us to express the SPT invariants in terms of continuum field theory. We show that SPT invariants of pure gauge actions describe the SPTs predicted by group cohomology, while the mixed gauge-gravity actions describe the beyond-group-cohomology SPTs. We find new examples of mixed gauge-gravity actions for U(1) SPTs in (4+1)D via the gravitational Chern-Simons term. Field theory representations of SPT invariants not only serve as tools for classifying SPTs, but also guide us in designing physical probes for them. In addition, our field theory representations are independently powerful for studying group cohomology within the mathematical context.

  11. Topological analysis (BCP) of vibrational spectroscopic studies, docking, RDG, DSSC, Fukui functions and chemical reactivity of 2-methylphenylacetic acid

    Science.gov (United States)

    Kavimani, M.; Balachandran, V.; Narayana, B.; Vanasundari, K.; Revathi, B.

    2018-02-01

    Experimental FT-IR and FT-Raman spectra of 2-methylphenylacetic acid (MPA) were recorded and theoretical values are also analyzed. The non-linear optical (NLO) properties were evaluated by determination of first (5.5053 × 10- 30 e.s.u.) and second hyper-polarizabilities (7.6833 × 10- 36 e.s.u.) of the title compound. The Multiwfn package is used to find the weak non-covalent interaction (Van der Wall interaction) and strong repulsion (steric effect) of the molecule and examined by reduced density gradient. The molecular electrostatic potential (MEP) analysis used to find the most reactive sites for the electrophilic and nucleophilic attack. The chemical activity (electronegativity, hardness, chemical softness and chemical potential) of the title compound was predicted with the help of HOMO-LUMO energy values. The natural bond orbital (NBO) has been analyzed the stability of the molecule arising from the hyper-conjugative interaction. DSSCs were discussed in structural modifications that improve the electron injection efficiency of the title compound (MPA). The Fukui functions are calculated in order to get information associated with the local reactivity properties of the title compound. The binding sites of the two receptors were reported by molecular docking field and active site bond distance is same 1.9 Å. The inhibitor of the title compound forms a stable complex with 1QYV and 2H1K proteins at the binding energies are - 5.38 and - 5.85 (Δ G in kcal/mol).

  12. Differential topology an introduction

    CERN Document Server

    Gauld, David B

    2006-01-01

    Offering classroom-proven results, Differential Topology presents an introduction to point set topology via a naive version of nearness space. Its treatment encompasses a general study of surgery, laying a solid foundation for further study and greatly simplifying the classification of surfaces.This self-contained treatment features 88 helpful illustrations. Its subjects include topological spaces and properties, some advanced calculus, differentiable manifolds, orientability, submanifolds and an embedding theorem, and tangent spaces. Additional topics comprise vector fields and integral curv

  13. Fuzzy Soft Topological Groups

    Directory of Open Access Journals (Sweden)

    S. Nazmul

    2014-03-01

    Full Text Available Notions of Lowen type fuzzy soft topological space are introduced and some of their properties are established in the present paper. Besides this, a combined structure of a fuzzy soft topological space and a fuzzy soft group, which is termed here as fuzzy soft topological group is introduced. Homomorphic images and preimages are also examined. Finally, some definitions and results on fuzzy soft set are studied.

  14. Topological Foundations of Electromagnetism

    CERN Document Server

    Barrett, Terrence W

    2008-01-01

    Topological Foundations of Electromagnetism seeks a fundamental understanding of the dynamics of electromagnetism; and marshals the evidence that in certain precisely defined topological conditions, electromagnetic theory (Maxwell's theory) must be extended or generalized in order to provide an explanation and understanding of, until now, unusual electromagnetic phenomena. Key to this generalization is an understanding of the circumstances under which the so-called A potential fields have physical effects. Basic to the approach taken is that the topological composition of electromagnetic field

  15. Quality Partitioned Meshing of Multi-Material Objects

    Science.gov (United States)

    Zhang, Qin; Cha, Deukhyun; Bajaj, Chandrajit

    2016-01-01

    We present a simple but effective algorithm for generating topologically and geometrically consistent quality triangular surface meshing of compactly packed multiple heterogeneous domains in R3. By compact packing we imply that adjacent homogeneous domains or materials share some 0, 1, and/or 2 dimensional boundary. Such packed multiple material (or multi-material) solids arise naturally from classification/partitioning/segmentation of homogeneous domains in R3 into different sub-regions. The multi-materials may also represent separate functionally classified sections or just be multiple component copies tightly fused together as perhaps by layered manufacturing processes. The input to our algorithm is a geometric representation of the entire multi-material solid, and a volumetric classification map identifying the individual materials. As output, each individual material region is represented by a triangulated 2-manifold boundary, with adjacent material regions having shared boundaries. Our algorithm has been implemented, and applied to different multi-material solids, and the results are additionally presented with quantitative analysis of detection and cure of non-manifold interfaces as well as spurious small components. These meshes are useful for combined boundary element analysis, however these simulation results are not presented. PMID:27563367

  16. Topics in general topology

    CERN Document Server

    Morita, K

    1989-01-01

    Being an advanced account of certain aspects of general topology, the primary purpose of this volume is to provide the reader with an overview of recent developments.The papers cover basic fields such as metrization and extension of maps, as well as newly-developed fields like categorical topology and topological dynamics. Each chapter may be read independently of the others, with a few exceptions. It is assumed that the reader has some knowledge of set theory, algebra, analysis and basic general topology.

  17. Topological Gyroscopic Metamaterials

    Science.gov (United States)

    Nash, Lisa Michelle

    Topological materials are generally insulating in their bulk, with protected conducting states on their boundaries that are robust against disorder and perturbation of material property. The existence of these conducting edge states is characterized by an integer topological invariant. Though the phenomenon was first discovered in electronic systems, recent years have shown that topological states exist in classical systems as well. In this thesis we are primarily concerned with the topological properties of gyroscopic materials, which are created by coupling networks of fast-spinning objects. Through a series of simulations, numerical calculations, and experiments, we show that these materials can support topological edge states. We find that edge states in these gyroscopic metamaterials bear the hallmarks of topology related to broken time reversal symmetry: they transmit excitations unidirectionally and are extremely robust against experimental disorder. We also explore requirements for topology by studying several lattice configurations and find that topology emerges naturally in gyroscopic systems.A simple prescription can be used to create many gyroscopic lattices. Though many of our gyroscopic networks are periodic, we explore amorphous point-sets and find that topology also emerges in these networks.

  18. General Topology of the Universe

    OpenAIRE

    Pandya, Aalok

    2002-01-01

    General topology of the universe is descibed. It is concluded that topology of the present universe is greater or stronger than the topology of the universe in the past and topology of the future universe will be stronger or greater than the present topology of the universe. Consequently, the universe remains unbounded.

  19. Manifold Partition Discriminant Analysis.

    Science.gov (United States)

    Yang Zhou; Shiliang Sun

    2017-04-01

    We propose a novel algorithm for supervised dimensionality reduction named manifold partition discriminant analysis (MPDA). It aims to find a linear embedding space where the within-class similarity is achieved along the direction that is consistent with the local variation of the data manifold, while nearby data belonging to different classes are well separated. By partitioning the data manifold into a number of linear subspaces and utilizing the first-order Taylor expansion, MPDA explicitly parameterizes the connections of tangent spaces and represents the data manifold in a piecewise manner. While graph Laplacian methods capture only the pairwise interaction between data points, our method captures both pairwise and higher order interactions (using regional consistency) between data points. This manifold representation can help to improve the measure of within-class similarity, which further leads to improved performance of dimensionality reduction. Experimental results on multiple real-world data sets demonstrate the effectiveness of the proposed method.

  20. Partitional clustering algorithms

    CERN Document Server

    2015-01-01

    This book summarizes the state-of-the-art in partitional clustering. Clustering, the unsupervised classification of patterns into groups, is one of the most important tasks in exploratory data analysis. Primary goals of clustering include gaining insight into, classifying, and compressing data. Clustering has a long and rich history that spans a variety of scientific disciplines including anthropology, biology, medicine, psychology, statistics, mathematics, engineering, and computer science. As a result, numerous clustering algorithms have been proposed since the early 1950s. Among these algorithms, partitional (nonhierarchical) ones have found many applications, especially in engineering and computer science. This book provides coverage of consensus clustering, constrained clustering, large scale and/or high dimensional clustering, cluster validity, cluster visualization, and applications of clustering. Examines clustering as it applies to large and/or high-dimensional data sets commonly encountered in reali...

  1. Linking network topology to function. Comment on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function" by O.C. Martin, A. Krzywicki and M. Zagorski

    Science.gov (United States)

    di Bernardo, Diego

    2016-07-01

    The review by Martin et al. deals with a long standing problem at the interface of complex systems and molecular biology, that is the relationship between the topology of a complex network and its function. In biological terms the problem translates to relating the topology of gene regulatory networks (GRNs) to specific cellular functions. GRNs control the spatial and temporal activity of the genes encoded in the cell's genome by means of specialised proteins called Transcription Factors (TFs). A TF is able to recognise and bind specifically to a sequence (TF biding site) of variable length (order of magnitude of 10) found upstream of the sequence encoding one or more genes (at least in prokaryotes) and thus activating or repressing their transcription. TFs can thus be distinguished in activator and repressor. The picture can become more complex since some classes of TFs can form hetero-dimers consisting of a protein complex whose subunits are the individual TFs. Heterodimers can have completely different binding sites and activity compared to their individual parts. In this review the authors limit their attention to prokaryotes where the complexity of GRNs is somewhat reduced. Moreover they exploit a unique feature of living systems, i.e. evolution, to understand whether function can shape network topology. Indeed, prokaryotes such as bacteria are among the oldest living systems that have become perfectly adapted to their environment over geological scales and thus have reached an evolutionary steady-state where the fitness of the population has reached a plateau. By integrating in silico analysis and comparative evolution, the authors show that indeed function does tend to shape the structure of a GRN, however this trend is not always present and depends on the properties of the network being examined. Interestingly, the trend is more apparent for sparse networks, i.e. where the density of edges is very low. Sparsity is indeed one of the most prominent features

  2. Topology optimization based on the harmony search method

    International Nuclear Information System (INIS)

    Lee, Seung-Min; Han, Seog-Young

    2017-01-01

    A new topology optimization scheme based on a Harmony search (HS) as a metaheuristic method was proposed and applied to static stiffness topology optimization problems. To apply the HS to topology optimization, the variables in HS were transformed to those in topology optimization. Compliance was used as an objective function, and harmony memory was defined as the set of the optimized topology. Also, a parametric study for Harmony memory considering rate (HMCR), Pitch adjusting rate (PAR), and Bandwidth (BW) was performed to find the appropriate range for topology optimization. Various techniques were employed such as a filtering scheme, simple average scheme and harmony rate. To provide a robust optimized topology, the concept of the harmony rate update rule was also implemented. Numerical examples are provided to verify the effectiveness of the HS by comparing the optimal layouts of the HS with those of Bidirectional evolutionary structural optimization (BESO) and Artificial bee colony algorithm (ABCA). The following conclu- sions could be made: (1) The proposed topology scheme is very effective for static stiffness topology optimization problems in terms of stability, robustness and convergence rate. (2) The suggested method provides a symmetric optimized topology despite the fact that the HS is a stochastic method like the ABCA. (3) The proposed scheme is applicable and practical in manufacturing since it produces a solid-void design of the optimized topology. (4) The suggested method appears to be very effective for large scale problems like topology optimization.

  3. Topology optimization based on the harmony search method

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Seung-Min; Han, Seog-Young [Hanyang University, Seoul (Korea, Republic of)

    2017-06-15

    A new topology optimization scheme based on a Harmony search (HS) as a metaheuristic method was proposed and applied to static stiffness topology optimization problems. To apply the HS to topology optimization, the variables in HS were transformed to those in topology optimization. Compliance was used as an objective function, and harmony memory was defined as the set of the optimized topology. Also, a parametric study for Harmony memory considering rate (HMCR), Pitch adjusting rate (PAR), and Bandwidth (BW) was performed to find the appropriate range for topology optimization. Various techniques were employed such as a filtering scheme, simple average scheme and harmony rate. To provide a robust optimized topology, the concept of the harmony rate update rule was also implemented. Numerical examples are provided to verify the effectiveness of the HS by comparing the optimal layouts of the HS with those of Bidirectional evolutionary structural optimization (BESO) and Artificial bee colony algorithm (ABCA). The following conclu- sions could be made: (1) The proposed topology scheme is very effective for static stiffness topology optimization problems in terms of stability, robustness and convergence rate. (2) The suggested method provides a symmetric optimized topology despite the fact that the HS is a stochastic method like the ABCA. (3) The proposed scheme is applicable and practical in manufacturing since it produces a solid-void design of the optimized topology. (4) The suggested method appears to be very effective for large scale problems like topology optimization.

  4. Chern-Simons Theory, Matrix Models, and Topological Strings

    International Nuclear Information System (INIS)

    Walcher, J

    2006-01-01

    This book is a find. Marino meets the challenge of filling in less than 200 pages the need for an accessible review of topological gauge/gravity duality. He is one of the pioneers of the subject and a clear expositor. It is no surprise that reading this book is a great pleasure. The existence of dualities between gauge theories and theories of gravity remains one of the most surprising recent discoveries in mathematical physics. While it is probably fair to say that we do not yet understand the full reach of such a relation, the impressive amount of evidence that has accumulated over the past years can be regarded as a substitute for a proof, and will certainly help to delineate the question of what is the most fundamental quantum mechanical theory. Here is a brief summary of the book. The journey begins with matrix models and an introduction to various techniques for the computation of integrals including perturbative expansion, large-N approximation, saddle point analysis, and the method of orthogonal polynomials. The second chapter, on Chern-Simons theory, is the longest and probably the most complete one in the book. Starting from the action we meet Wilson loop observables, the associated perturbative 3-manifold invariants, Witten's exact solution via the canonical duality to WZW models, the framing ambiguity, as well as a collection of results on knot invariants that can be derived from Chern-Simons theory and the combinatorics of U (∞) representation theory. The chapter also contains a careful derivation of the large-N expansion of the Chern-Simons partition function, which forms the cornerstone of its interpretation as a closed string theory. Finally, we learn that Chern-Simons theory can sometimes also be represented as a matrix model. The story then turns to the gravity side, with an introduction to topological sigma models (chapter 3) and topological string theory (chapter 4). While this presentation is necessarily rather condensed (and the beginner may

  5. Modeling Internet Topology Dynamics

    NARCIS (Netherlands)

    Haddadi, H.; Uhlig, S.; Moore, A.; Mortier, R.; Rio, M.

    Despite the large number of papers on network topology modeling and inference, there still exists ambiguity about the real nature of the Internet AS and router level topology. While recent findings have illustrated the inaccuracies in maps inferred from BGP peering and traceroute measurements,

  6. Topology optimization approaches

    DEFF Research Database (Denmark)

    Sigmund, Ole; Maute, Kurt

    2013-01-01

    Topology optimization has undergone a tremendous development since its introduction in the seminal paper by Bendsøe and Kikuchi in 1988. By now, the concept is developing in many different directions, including “density”, “level set”, “topological derivative”, “phase field”, “evolutionary...

  7. Manufacturing tolerant topology optimization

    DEFF Research Database (Denmark)

    Sigmund, Ole

    2009-01-01

    (dilated) structures compared to the intended topology. Examples are MEMS devices manufactured using etching processes, nano-devices manufactured using e-beam lithography or laser micro-machining and macro structures manufactured using milling processes. In the suggested robust topology optimization...

  8. Reconfigurable topological photonic crystal

    Science.gov (United States)

    Shalaev, Mikhail I.; Desnavi, Sameerah; Walasik, Wiktor; Litchinitser, Natalia M.

    2018-02-01

    Topological insulators are materials that conduct on the surface and insulate in their interior due to non-trivial topology of the band structure. The edge states on the interface between topological (non-trivial) and conventional (trivial) insulators are topologically protected from scattering due to structural defects and disorders. Recently, it was shown that photonic crystals (PCs) can serve as a platform for realizing a scatter-free propagation of light waves. In conventional PCs, imperfections, structural disorders, and surface roughness lead to significant losses. The breakthrough in overcoming these problems is likely to come from the synergy of the topological PCs and silicon-based photonics technology that enables high integration density, lossless propagation, and immunity to fabrication imperfections. For many applications, reconfigurability and capability to control the propagation of these non-trivial photonic edge states is essential. One way to facilitate such dynamic control is to use liquid crystals (LCs), which allow to modify the refractive index with external electric field. Here, we demonstrate dynamic control of topological edge states by modifying the refractive index of a LC background medium. Background index is changed depending on the orientation of a LC, while preserving the topology of the system. This results in a change of the spectral position of the photonic bandgap and the topological edge states. The proposed concept might be implemented using conventional semiconductor technology, and can be used for robust energy transport in integrated photonic devices, all-optical circuity, and optical communication systems.

  9. Introduction to topology

    CERN Document Server

    Mendelson, Bert

    1990-01-01

    Highly regarded for its exceptional clarity, imaginative and instructive exercises, and fine writing style, this concise book offers an ideal introduction to the fundamentals of topology. It provides a simple, thorough survey of elementary topics, starting with set theory and advancing to metric and topological spaces, connectedness, and compactness. 1975 edition.

  10. Hamiltonian thermodynamics of d-dimensional (d≥4) Reissner-Nordstroem-anti-de Sitter black holes with spherical, planar, and hyperbolic topology

    International Nuclear Information System (INIS)

    Dias, Goncalo A. S.; Lemos, Jose P. S.

    2009-01-01

    The Hamiltonian thermodynamics formalism is applied to the general d-dimensional Reissner-Nordstroem-anti-de Sitter black hole with spherical, planar, and hyperbolic horizon topology. After writing its action and performing a Legendre transformation, surface terms are added in order to guarantee a well-defined variational principle with which to obtain sensible equations of motion, and also to allow later on the thermodynamical analysis. Then a Kuchar canonical transformation is done, which changes from the metric canonical coordinates to the physical parameters coordinates. Again, a well-defined variational principle is guaranteed through boundary terms. These terms influence the falloff conditions of the variables and at the same time the form of the new Lagrange multipliers. Reduction to the true degrees of freedom is performed, which are the conserved mass and charge of the black hole. Upon quantization a Lorentzian partition function Z is written for the grand canonical ensemble, where the temperature T and the electric potential φ are fixed at infinity. After imposing Euclidean boundary conditions on the partition function, the respective effective action I * , and thus the thermodynamical partition function, is determined for any dimension d and topology k. This is a quite general action. Several previous results can be then condensed in our single general formula for the effective action I * . Phase transitions are studied for the spherical case, and it is shown that all the other topologies have no phase transitions. A parallel with the Bose-Einstein condensation can be established. Finally, the expected values of energy, charge, and entropy are determined for the black hole solution.

  11. Amorphous Gyroscopic Topological Metamaterials

    Science.gov (United States)

    Mitchell, Noah P.; Nash, Lisa M.; Hexner, Daniel; Turner, Ari M.; Irvine, William T. M.

    Mechanical topological metamaterials display striking mechanical responses, such as unidirectional surface modes that are impervious to disorder. This behavior arises from the topology of their vibrational spectra. All examples of topological metamaterials to date are finely-tuned structures such as crystalline lattices or jammed packings. Here, we present robust recipes for building amorphous topological metamaterials with arbitrary underlying structure and no long-range order. Using interacting gyroscopes as a model system, we demonstrate through experiment, simulation, and theoretical methods that the local geometry and interactions are sufficient to generate topological mobility gaps, allowing for spatially-resolved, real-space calculations of the Chern number. The robustness of our approach enables the design and self-assembly of non-crystalline materials with protected, unidirectional waveguides on the micro and macro scale.

  12. Interactive Topology Optimization

    DEFF Research Database (Denmark)

    Nobel-Jørgensen, Morten

    Interactivity is the continuous interaction between the user and the application to solve a task. Topology optimization is the optimization of structures in order to improve stiffness or other objectives. The goal of the thesis is to explore how topology optimization can be used in applications...... in an interactive and intuitive way. By creating such applications with an intuitive and simple user interface we allow non-engineers like designers and architects to easily experiment with boundary conditions, design domains and other optimization settings. This is in contrast to commercial topology optimization...... software where the users are assumed to be well-educated both in the finite element method and topology optimization. This dissertation describes how various topology optimization methods have been used for creating cross-platform applications with high performance. The user interface design is based...

  13. An introduction to topological Yang-Mills theory

    International Nuclear Information System (INIS)

    Baal, P. van; Rijksuniversiteit Utrecht

    1990-01-01

    In these lecture notes I give a ''historical'' introduction to topological gauge theories. My main aim is to clearly explain the origin of the Hamiltonian which forms the basis of Witten's construction of topological gauge theory. I show how this Hamiltonian arises from Witten's formulation of Morse theory as applied by Floer to the infinite dimensional space of gauge connections, with the Chern-Simons functional as the appriopriate Morse function(al). I therefore discuss the De Rham cohomology, Hodge theory, Morse theory, Floer homology, Witten's construction of the Lagrangian for topological gauge theory, the subsequent BRST formulation of topological quantum field theory and finally Witten's construction of the Donaldson polynomials. (author)

  14. Machine learning topological states

    Science.gov (United States)

    Deng, Dong-Ling; Li, Xiaopeng; Das Sarma, S.

    2017-11-01

    Artificial neural networks and machine learning have now reached a new era after several decades of improvement where applications are to explode in many fields of science, industry, and technology. Here, we use artificial neural networks to study an intriguing phenomenon in quantum physics—the topological phases of matter. We find that certain topological states, either symmetry-protected or with intrinsic topological order, can be represented with classical artificial neural networks. This is demonstrated by using three concrete spin systems, the one-dimensional (1D) symmetry-protected topological cluster state and the 2D and 3D toric code states with intrinsic topological orders. For all three cases, we show rigorously that the topological ground states can be represented by short-range neural networks in an exact and efficient fashion—the required number of hidden neurons is as small as the number of physical spins and the number of parameters scales only linearly with the system size. For the 2D toric-code model, we find that the proposed short-range neural networks can describe the excited states with Abelian anyons and their nontrivial mutual statistics as well. In addition, by using reinforcement learning we show that neural networks are capable of finding the topological ground states of nonintegrable Hamiltonians with strong interactions and studying their topological phase transitions. Our results demonstrate explicitly the exceptional power of neural networks in describing topological quantum states, and at the same time provide valuable guidance to machine learning of topological phases in generic lattice models.

  15. Topological Field Theory of Time-Reversal Invariant Insulators

    Energy Technology Data Exchange (ETDEWEB)

    Qi, Xiao-Liang; Hughes, Taylor; Zhang, Shou-Cheng; /Stanford U., Phys. Dept.

    2010-03-19

    We show that the fundamental time reversal invariant (TRI) insulator exists in 4 + 1 dimensions, where the effective field theory is described by the 4 + 1 dimensional Chern-Simons theory and the topological properties of the electronic structure is classified by the second Chern number. These topological properties are the natural generalizations of the time reversal breaking (TRB) quantum Hall insulator in 2 + 1 dimensions. The TRI quantum spin Hall insulator in 2 + 1 dimensions and the topological insulator in 3 + 1 dimension can be obtained as descendants from the fundamental TRI insulator in 4 + 1 dimensions through a dimensional reduction procedure. The effective topological field theory, and the Z{sub 2} topological classification for the TRI insulators in 2+1 and 3+1 dimensions are naturally obtained from this procedure. All physically measurable topological response functions of the TRI insulators are completely described by the effective topological field theory. Our effective topological field theory predicts a number of novel and measurable phenomena, the most striking of which is the topological magneto-electric effect, where an electric field generates a magnetic field in the same direction, with an universal constant of proportionality quantized in odd multiples of the fine structure constant {alpha} = e{sup 2}/hc. Finally, we present a general classification of all topological insulators in various dimensions, and describe them in terms of a unified topological Chern-Simons field theory in phase space.

  16. Complete theory of symmetry-based indicators of band topology.

    Science.gov (United States)

    Po, Hoi Chun; Vishwanath, Ashvin; Watanabe, Haruki

    2017-06-30

    The interplay between symmetry and topology leads to a rich variety of electronic topological phases, protecting states such as the topological insulators and Dirac semimetals. Previous results, like the Fu-Kane parity criterion for inversion-symmetric topological insulators, demonstrate that symmetry labels can sometimes unambiguously indicate underlying band topology. Here we develop a systematic approach to expose all such symmetry-based indicators of band topology in all the 230 space groups. This is achieved by first developing an efficient way to represent band structures in terms of elementary basis states, and then isolating the topological ones by removing the subset of atomic insulators, defined by the existence of localized symmetric Wannier functions. Aside from encompassing all earlier results on such indicators, including in particular the notion of filling-enforced quantum band insulators, our theory identifies symmetry settings with previously hidden forms of band topology, and can be applied to the search for topological materials.Understanding the role of topology in determining electronic structure can lead to the discovery, or appreciation, of materials with exotic properties such as protected surface states. Here, the authors present a framework for identifying topologically distinct band-structures for all 3D space groups.

  17. The topological filtration of gamma-structures

    DEFF Research Database (Denmark)

    Li, Thomas; Reidys, Christian

    2013-01-01

    topological genus less than or equal to gamma, where composition means concatenation and nesting of such blocks. Our main results are the derivation of a new bivariate generating function for gamma-structures via symbolic methods, the singularity analysis of the solutions and a central limit theorem......In this paper we study gamma-structures filtered by topological genus. gamma-structures are a class of RNA pseudoknot structures that plays a key role in the context of polynomial time folding of RNA pseudoknot structures. A gamma-structure is composed by specific building blocks, that have...... for the distribution of topological genus in gamma-structures of given length. In our derivation specific bivariate polynomials play a central role. Their coefficients count particular motifs of fixed topological genus and they are of relevance in the context of genus recursion and novel folding algorithms....

  18. Elements of differential topology

    CERN Document Server

    Shastri, Anant R

    2011-01-01

    Derived from the author's course on the subject, Elements of Differential Topology explores the vast and elegant theories in topology developed by Morse, Thom, Smale, Whitney, Milnor, and others. It begins with differential and integral calculus, leads you through the intricacies of manifold theory, and concludes with discussions on algebraic topology, algebraic/differential geometry, and Lie groups.The first two chapters review differential and integral calculus of several variables and present fundamental results that are used throughout the text. The next few chapters focus on smooth manifo

  19. Signatures of topological superconductivity

    Energy Technology Data Exchange (ETDEWEB)

    Peng, Yang

    2017-07-19

    The prediction and experimental discovery of topological insulators brought the importance of topology in condensed matter physics into the limelight. Topology hence acts as a new dimension along which more and more new states of matter start to emerge. One of these topological states of matter, namely topological superconductors, comes into the focus because of their gapless excitations. These gapless excitations, especially in one dimensional topological superconductors, are Majorana zero modes localized at the ends of the superconductor and exhibit exotic nonabelian statistics, which can be potentially applied to fault-tolerant quantum computation. Given their highly interesting physical properties and potential applications to quantum computation, both theorists and experimentalists spend great efforts to realize topological supercondoctors and to detect Majoranas. In two projects within this thesis, we investigate the properties of Majorana zero modes in realistic materials which are absent in simple theoretical models. We find that the superconducting proximity effect, an essential ingredient in all existing platforms for topological superconductors, plays a significant role in determining the localization property of the Majoranas. Strong proximity coupling between the normal system and the superconducting substrate can lead to strongly localized Majoranas, which can explain the observation in a recent experiment. Motivated by experiments in Molenkamp's group, we also look at realistic quantum spin Hall Josephson junctions, in which charge puddles acting as magnetic impurities are coupled to the helical edge states. We find that with this setup, the junction generically realizes an exotic 8π periodic Josephson effect, which is absent in a pristine Josephson junction. In another two projects, we propose more pronounced signatures of Majoranas that are accessible with current experimental techniques. The first one is a transport measurement, which uses

  20. Topology general & algebraic

    CERN Document Server

    Chatterjee, D

    2007-01-01

    About the Book: This book provides exposition of the subject both in its general and algebraic aspects. It deals with the notions of topological spaces, compactness, connectedness, completeness including metrizability and compactification, algebraic aspects of topological spaces through homotopy groups and homology groups. It begins with the basic notions of topological spaces but soon going beyond them reaches the domain of algebra through the notions of homotopy, homology and cohomology. How these approaches work in harmony is the subject matter of this book. The book finally arrives at the

  1. Global Topology Optimisation

    Science.gov (United States)

    2016-10-31

    AFRL-AFOSR-UK-TR-2017-0002 Global Topology Optimisation Robert Jack UNIVERSITY OF BATH Final Report 10/31/2016 DISTRIBUTION A: Distribution approved...01 Aug 2015 to 31 Jul 2016 4.  TITLE AND SUBTITLE Global Topology Optimisation 5a.  CONTRACT NUMBER 5b.  GRANT NUMBER FA9550-15-1-0317 5c...future work. 15.  SUBJECT TERMS EOARD, Topology Optimization, Non Convex 16.  SECURITY CLASSIFICATION OF: 17.  LIMITATION OF       ABSTRACT SAR 18

  2. Algebraic topology and concurrency

    DEFF Research Database (Denmark)

    Fajstrup, Lisbeth; Raussen, Martin; Goubault, Eric

    2006-01-01

    We show in this article that some concepts from homotopy theory, in algebraic topology,are relevant for studying concurrent programs. We exhibit a natural semantics of semaphore programs, based on partially ordered topological spaces, which are studied up to “elastic deformation” or homotopy...... differences between ordinary and directed homotopy through examples. We also relate the topological view to a combinatorial view of concurrent programs closer to transition systems, through the notion of a cubical set. Finally we apply some of these concepts to the proof of the safeness of a two...

  3. From geometry to topology

    CERN Document Server

    Flegg, H Graham

    2001-01-01

    This excellent introduction to topology eases first-year math students and general readers into the subject by surveying its concepts in a descriptive and intuitive way, attempting to build a bridge from the familiar concepts of geometry to the formalized study of topology. The first three chapters focus on congruence classes defined by transformations in real Euclidean space. As the number of permitted transformations increases, these classes become larger, and their common topological properties become intuitively clear. Chapters 4-12 give a largely intuitive presentation of selected topics.

  4. Plasmonics in Topological Insulators

    Directory of Open Access Journals (Sweden)

    Yi-Ping Lai

    2014-04-01

    Full Text Available With strong spin-orbit coupling, topological insulators have an insulating bulk state, characterized by a band gap, and a conducting surface state, characterized by a Dirac cone. Plasmons in topological insulators show high frequency-tunability in the mid-infrared and terahertz spectral regions with transverse spin oscillations, also called “spin-plasmons”. This paper presents a discussion and review of the developments in this field from the fundamental theory of plasmons in bulk, thin-film, and surface-magnetized topological insulators to the techniques of plasmon excitation and future applications.

  5. Duality and topology

    Science.gov (United States)

    Sacramento, P. D.; Vieira, V. R.

    2018-04-01

    Mappings between models may be obtained by unitary transformations with preservation of the spectra but in general a change in the states. Non-canonical transformations in general also change the statistics of the operators involved. In these cases one may expect a change of topological properties as a consequence of the mapping. Here we consider some dualities resulting from mappings, by systematically using a Majorana fermion representation of spin and fermionic problems. We focus on the change of topological invariants that results from unitary transformations taking as examples the mapping between a spin system and a topological superconductor, and between different fermionic systems.

  6. Experiments in topology

    CERN Document Server

    Barr, Stephen

    1989-01-01

    ""A mathematician named KleinThought the Moebius band was divine.Said he: 'If you glueThe edges of two,You'll get a weird bottle like mine.' "" - Stephen BarrIn this lively book, the classic in its field, a master of recreational topology invites readers to venture into such tantalizing topological realms as continuity and connectedness via the Klein bottle and the Moebius strip. Beginning with a definition of topology and a discussion of Euler's theorem, Mr. Barr brings wit and clarity to these topics:New Surfaces (Orientability, Dimension, The Klein Bottle, etc.)The Shortest Moebius StripThe

  7. Elementary topology problem textbook

    CERN Document Server

    Viro, O Ya; Netsvetaev, N Yu; Kharlamov, V M

    2008-01-01

    This textbook on elementary topology contains a detailed introduction to general topology and an introduction to algebraic topology via its most classical and elementary segment centered at the notions of fundamental group and covering space. The book is tailored for the reader who is determined to work actively. The proofs of theorems are separated from their formulations and are gathered at the end of each chapter. This makes the book look like a pure problem book and encourages the reader to think through each formulation. A reader who prefers a more traditional style can either find the pr

  8. Topologically massive supergravity

    Directory of Open Access Journals (Sweden)

    S. Deser

    1983-01-01

    Full Text Available The locally supersymmetric extension of three-dimensional topologically massive gravity is constructed. Its fermionic part is the sum of the (dynamically trivial Rarita-Schwinger action and a gauge-invariant topological term, of second derivative order, analogous to the gravitational one. It is ghost free and represents a single massive spin 3/2 excitation. The fermion-gravity coupling is minimal and the invariance is under the usual supergravity transformations. The system's energy, as well as that of the original topological gravity, is therefore positive.

  9. Topological pregauge-pregeometry

    International Nuclear Information System (INIS)

    Akama, Keiichi; Oda, Ichiro.

    1990-12-01

    The pregauge-pregeometric action, i.e. the fundamental matter action whose quantum fluctuations give rise to the Einstein-Hilbert and the Yang-Mills actions is investigated from the viewpoint of the topological field theory. We show that the scalar pregauge-pregeometric action is a topological invariant for appropriate choices of the internal gauge group. This model realizes the picture that the gravitational and internal gauge theory at the low energy scale is induced as the quantum effects of the topological field theory at the Planck scale. (author)

  10. Exact quantization conditions, toric Calabi-Yau and non-perturbative topological string

    International Nuclear Information System (INIS)

    Sun, Kaiwen; Wang, Xin; Huang, Min-xin

    2017-01-01

    We establish the precise relation between the Nekrasov-Shatashvili (NS) quantization scheme and Grassi-Hatsuda-Mariño conjecture for the mirror curve of arbitrary toric Calabi-Yau threefold. For a mirror curve of genus g, the NS quantization scheme leads to g quantization conditions for the corresponding integrable system. The exact NS quantization conditions enjoy a self S-duality with respect to Planck constant ℏ and can be derived from the Lockhart-Vafa partition function of non-perturbative topological string. Based on a recent observation on the correspondence between spectral theory and topological string, another quantization scheme was proposed by Grassi-Hatsuda-Mariño, in which there is a single quantization condition and the spectra are encoded in the vanishing of a quantum Riemann theta function. We demonstrate that there actually exist at least g nonequivalent quantum Riemann theta functions and the intersections of their theta divisors coincide with the spectra determined by the exact NS quantization conditions. This highly nontrivial coincidence between the two quantization schemes requires infinite constraints among the refined Gopakumar-Vafa invariants. The equivalence for mirror curves of genus one has been verified for some local del Pezzo surfaces. In this paper, we generalize the correspondence to higher genus, and analyze in detail the resolved ℂ"3/ℤ_5 orbifold and several SU(N) geometries. We also give a proof for some models at ℏ=2π/k.

  11. Exact quantization conditions, toric Calabi-Yau and non-perturbative topological string

    Energy Technology Data Exchange (ETDEWEB)

    Sun, Kaiwen [Department of Mathematics, University of Science and Technology of China,96 Jinzhai Road, Hefei, Anhui 230026 (China); Wang, Xin; Huang, Min-xin [Interdisciplinary Center for Theoretical Study,Department of Modern Physics, University of Science and Technology of China,96 Jinzhai Road, Hefei, Anhui 230026 (China)

    2017-01-16

    We establish the precise relation between the Nekrasov-Shatashvili (NS) quantization scheme and Grassi-Hatsuda-Mariño conjecture for the mirror curve of arbitrary toric Calabi-Yau threefold. For a mirror curve of genus g, the NS quantization scheme leads to g quantization conditions for the corresponding integrable system. The exact NS quantization conditions enjoy a self S-duality with respect to Planck constant ℏ and can be derived from the Lockhart-Vafa partition function of non-perturbative topological string. Based on a recent observation on the correspondence between spectral theory and topological string, another quantization scheme was proposed by Grassi-Hatsuda-Mariño, in which there is a single quantization condition and the spectra are encoded in the vanishing of a quantum Riemann theta function. We demonstrate that there actually exist at least g nonequivalent quantum Riemann theta functions and the intersections of their theta divisors coincide with the spectra determined by the exact NS quantization conditions. This highly nontrivial coincidence between the two quantization schemes requires infinite constraints among the refined Gopakumar-Vafa invariants. The equivalence for mirror curves of genus one has been verified for some local del Pezzo surfaces. In this paper, we generalize the correspondence to higher genus, and analyze in detail the resolved ℂ{sup 3}/ℤ{sub 5} orbifold and several SU(N) geometries. We also give a proof for some models at ℏ=2π/k.

  12. Topological systems versus attachment relations | Guido ...

    African Journals Online (AJOL)

    ... localification procedure introduced by S. Vickers for topological systems. Keywords: Adjoint functor, algebra, attachment relation, embedding functor, localification of topological systems, spatialization of topological systems, topological system, topological theory, variety of algebras. Quaestiones Mathematicae 37(2014), ...

  13. Constructive topology of bishop spaces

    OpenAIRE

    Petrakis, Iosif

    2015-01-01

    The theory of Bishop spaces (TBS) is so far the least developed approach to constructive topology with points. Bishop introduced function spaces, here called Bishop spaces, in 1967, without really exploring them, and in 2012 Bridges revived the subject. In this Thesis we develop TBS. Instead of having a common space-structure on a set X and R, where R denotes the set of constructive reals, that determines a posteriori which functions of type X -> R are continuous with respect to it, wi...

  14. Topological analysis of telecommunications networks

    Directory of Open Access Journals (Sweden)

    Milojko V. Jevtović

    2011-01-01

    Full Text Available A topological analysis of the structure of telecommunications networks is a very interesting topic in the network research, but also a key issue in their design and planning. Satisfying multiple criteria in terms of locations of switching nodes as well as their connectivity with respect to the requests for capacity, transmission speed, reliability, availability and cost are the main research objectives. There are three ways of presenting the topology of telecommunications networks: table, matrix or graph method. The table method is suitable for a network of a relatively small number of nodes in relation to the number of links. The matrix method involves the formation of a connection matrix in which its columns present source traffic nodes and its rows are the switching systems that belong to the destination. The method of the topology graph means that the network nodes are connected via directional or unidirectional links. We can thus easily analyze the structural parameters of telecommunications networks. This paper presents the mathematical analysis of the star-, ring-, fully connected loop- and grid (matrix-shaped topology as well as the topology based on the shortest path tree. For each of these topologies, the expressions for determining the number of branches, the middle level of reliability, the medium length and the average length of the link are given in tables. For the fully connected loop network with five nodes the values of all topological parameters are calculated. Based on the topological parameters, the relationships that represent integral and distributed indicators of reliability are given in this work as well as the values of the particular network. The main objectives of the topology optimization of telecommunications networks are: achieving the minimum complexity, maximum capacity, the shortest path message transfer, the maximum speed of communication and maximum economy. The performance of telecommunications networks is

  15. Brain Structural Covariance Network Topology in Remitted Posttraumatic Stress Disorder

    Directory of Open Access Journals (Sweden)

    Delin Sun

    2018-03-01

    Full Text Available Posttraumatic stress disorder (PTSD is a prevalent, chronic disorder with high psychiatric morbidity; however, a substantial portion of affected individuals experience remission after onset. Alterations in brain network topology derived from cortical thickness correlations are associated with PTSD, but the effects of remitted symptoms on network topology remain essentially unexplored. In this cross-sectional study, US military veterans (N = 317 were partitioned into three diagnostic groups, current PTSD (CURR-PTSD, N = 101, remitted PTSD with lifetime but no current PTSD (REMIT-PTSD, N = 35, and trauma-exposed controls (CONTROL, n = 181. Cortical thickness was assessed for 148 cortical regions (nodes and suprathreshold interregional partial correlations across subjects constituted connections (edges in each group. Four centrality measures were compared with characterize between-group differences. The REMIT-PTSD and CONTROL groups showed greater centrality in left frontal pole than the CURR-PTSD group. The REMIT-PTSD group showed greater centrality in right subcallosal gyrus than the other two groups. Both REMIT-PTSD and CURR-PTSD groups showed greater centrality in right superior frontal sulcus than CONTROL group. The centrality in right subcallosal gyrus, left frontal pole, and right superior frontal sulcus may play a role in remission, current symptoms, and PTSD history, respectively. The network centrality changes in critical brain regions and structural networks are associated with remitted PTSD, which typically coincides with enhanced functional behaviors, better emotion regulation, and improved cognitive processing. These brain regions and associated networks may be candidates for developing novel therapies for PTSD. Longitudinal work is needed to characterize vulnerability to chronic PTSD, and resilience to unremitting PTSD.

  16. The Topological CP1 Model and the Large-N Matrix Integral

    Science.gov (United States)

    Eguchi, Tohru; Yang, Sung-Kil

    We discuss the topological CP1 model which consists of the holomorphic maps from Riemann surfaces onto CP1. We construct a large-N matrix model which reproduces precisely the partition function of the CP1 model at all genera of Riemann surfaces. The action of our matrix model has the form \\begin{array}{c} {\\rm Tr}\\, V (M) = -2\\, {\\rm Tr}\\, M (\\log M -1) +2\\displaystyle\\sum t_{n, P}\\, {\\rm Tr}\\, M^n (\\log M -c_n)\\\\[5pt] \\kern8pt +\\displaystyle\\sum 1/n\\cdot t_{n -1, Q}\\, {\\rm Tr}\\, M^n\\,, \\quad c_n =\\displaystyle\\sum_1^n 1/j\\,, \\end{array} where M is an N × N Hermitian matrix and tn,P(tn,Q), (n = 0, 1, 2, …) are the coupling constants of the nth descendant of the puncture (Kähler) operator.

  17. Topology of tokamak orbits

    International Nuclear Information System (INIS)

    Rome, J.A.; Peng, Y.K.M.

    1978-09-01

    Guiding center orbits in noncircular axisymmetric tokamak plasmas are studied in the constants of motion (COM) space of (v, zeta, psi/sub m/). Here, v is the particle speed, zeta is the pitch angle with respect to the parallel equilibrium current, J/sub parallels/, and psi/sub m/ is the maximum value of the poloidal flux function (increasing from the magnetic axis) along the guiding center orbit. Two D-shaped equilibria in a flux-conserving tokamak having β's of 1.3% and 7.7% are used as examples. In this space, each confined orbit corresponds to one and only one point and different types of orbits (e.g., circulating, trapped, stagnation and pinch orbits) are represented by separate regions or surfaces in the space. It is also shown that the existence of an absolute minimum B in the higher β (7.7%) equilibrium results in a dramatically different orbit topology from that of the lower β case. The differences indicate the confinement of additional high energy (v → c, within the guiding center approximation) trapped, co- and countercirculating particles whose orbit psi/sub m/ falls within the absolute B well

  18. Topological Solitons in Physics.

    Science.gov (United States)

    Parsa, Zohreh

    1979-01-01

    A broad definition of solitons and a discussion of their role in physics is given. Vortices and magnetic monopoles which are examples of topological solitons in two and three spatial dimensions are described in some detail. (BB)

  19. Topological susceptibility from slabs

    Energy Technology Data Exchange (ETDEWEB)

    Bietenholz, Wolfgang [Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, A.P. 70-543, Distrito Federal, C.P. 04510 (Mexico); Forcrand, Philippe de [Institute for Theoretical Physics, ETH Zürich,CH-8093 Zürich (Switzerland); CERN, Physics Department, TH Unit, CH-1211 Geneva 23 (Switzerland); Gerber, Urs [Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, A.P. 70-543, Distrito Federal, C.P. 04510 (Mexico); Instituto de Física y Matemáticas, Universidad Michoacana de San Nicolás de Hidalgo,Edificio C-3, Apdo. Postal 2-82, Morelia, Michoacán, C.P. 58040 (Mexico)

    2015-12-14

    In quantum field theories with topological sectors, a non-perturbative quantity of interest is the topological susceptibility χ{sub t}. In principle it seems straightforward to measure χ{sub t} by means of Monte Carlo simulations. However, for local update algorithms and fine lattice spacings, this tends to be difficult, since the Monte Carlo history rarely changes the topological sector. Here we test a method to measure χ{sub t} even if data from only one sector are available. It is based on the topological charges in sub-volumes, which we denote as slabs. Assuming a Gaussian distribution of these charges, this method enables the evaluation of χ{sub t}, as we demonstrate with numerical results for non-linear σ-models.

  20. Topology for analysis

    CERN Document Server

    Wilansky, Albert

    2008-01-01

    Three levels of examples and problems make this volume appropriate for students and professionals. Abundant exercises, ordered and numbered by degree of difficulty, illustrate important topological concepts. 1970 edition.

  1. Topological Susceptibility from Slabs

    CERN Document Server

    Bietenholz, Wolfgang; Gerber, Urs

    2015-01-01

    In quantum field theories with topological sectors, a non-perturbative quantity of interest is the topological susceptibility chi_t. In principle it seems straightforward to measure chi_t by means of Monte Carlo simulations. However, for local update algorithms and fine lattice spacings, this tends to be difficult, since the Monte Carlo history rarely changes the topological sector. Here we test a method to measure chi_t even if data from only one sector are available. It is based on the topological charges in sub-volumes, which we denote as slabs. Assuming a Gaussian distribution of these charges, this method enables the evaluation of chi_t, as we demonstrate with numerical results for non-linear sigma-models.

  2. Quantum topological entropy: First steps of a 'pedestrian' approach

    International Nuclear Information System (INIS)

    Hudetz, T.

    1991-01-01

    We introduce a notion of topological entropy for automorphisms of arbitrary (noncommutative, but unital) nuclear C * -algebras A, generalizing the 'classical' topological entropy for a homeomorphism T: X → X of an arbitrary (possibly connected) compact Hausdorff space X, where the generalization is of course understood in the sense that the latter topological dynamical system (with Z-action) is equivalently viewed as the C * -dynamical system given by the T-induced automorphism of the Abelian C * -algebra A = C(X) of (complex-valued) continuous functions on X. As a simple but basic example, we calculate our quantum topological entropy for shift automorphisms on AF algebras A associated with topological Markov chains (i.e. 'quantum topological' Markov chains); and also a real physical interpretation of our simple 'quantum probabilistic' entropy functionals is discussed (already in the introduction, anticipating the later definitions and results). (author)

  3. Games for topological fixpoint logic

    NARCIS (Netherlands)

    Bezhanishvili, N.; Kupke, C.

    2016-01-01

    Topological fixpoint logics are a family of logics that admits topological models and where the fixpoint operators are defined with respect to the topological interpretations. Here we consider a topological fixpoint logic for relational structures based on Stone spaces, where the fixpoint operators

  4. Topological properties of instantons

    International Nuclear Information System (INIS)

    Mello, E.R.B. de.

    1978-07-01

    The pure Yang-Mills theory defined in R 4 space is considered and some relevant properties of gauge field like Instanton are shown. The vacuum structure of the theory is discussed, as well as the problem of topological numbers associated with the Instantons and anti-Instantons solutions. A procedure is presented showing how we can alter this topological number by of any variation in the field parameters. (Author) [pt

  5. The refined topological vertex

    International Nuclear Information System (INIS)

    Iqbal, Amer; Kozcaz, Can; Vafa, Cumrun

    2009-01-01

    We define a refined topological vertex which depends in addition on a parameter, which physically corresponds to extending the self-dual graviphoton field strength to a more general configuration. Using this refined topological vertex we compute, using geometric engineering, a two-parameter (equivariant) instanton expansion of gauge theories which reproduce the results of Nekrasov. The refined vertex is also expected to be related to Khovanov knot invariants.

  6. Manufacturing tolerant topology optimization

    OpenAIRE

    Sigmund, Ole

    2009-01-01

    In this paper we present an extension of the topology optimization method to include uncertainties during the fabrication of macro, micro and nano structures. More specifically, we consider devices that are manufactured using processes which may result in (uniformly) too thin (eroded) or too thick (dilated) structures compared to the intended topology. Examples are MEMS devices manufactured using etching processes, nano-devices manufactured using e-beam lithography or laser micro-machining an...

  7. Noncommutative topological dynamics

    International Nuclear Information System (INIS)

    Ramos, C. Correia; Martins, Nuno; Severino, Ricardo; Ramos, J. Sousa

    2006-01-01

    We study noncommutative dynamical systems associated to unimodal and bimodal maps of the interval. To these maps we associate subshifts and the correspondent AF-algebras and Cuntz-Krieger algebras. As an example we consider systems having equal topological entropy log(1 + φ), where φ is the golden number, but distinct chaotic behavior and we show how a new numerical invariant allows to distinguish that complexity. Finally, we give a statistical interpretation to the topological numerical invariants associated to bimodal maps

  8. Tunable Topological Phononic Crystals

    KAUST Repository

    Chen, Zeguo

    2016-05-27

    Topological insulators first observed in electronic systems have inspired many analogues in photonic and phononic crystals in which remarkable one-way propagation edge states are supported by topologically nontrivial band gaps. Such band gaps can be achieved by breaking the time-reversal symmetry to lift the degeneracy associated with Dirac cones at the corners of the Brillouin zone. Here, we report on our construction of a phononic crystal exhibiting a Dirac-like cone in the Brillouin zone center. We demonstrate that simultaneously breaking the time-reversal symmetry and altering the geometric size of the unit cell result in a topological transition that we verify by the Chern number calculation and edge-mode analysis. We develop a complete model based on the tight binding to uncover the physical mechanisms of the topological transition. Both the model and numerical simulations show that the topology of the band gap is tunable by varying both the velocity field and the geometric size; such tunability may dramatically enrich the design and use of acoustic topological insulators.

  9. A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera:Papilionidae).

    Science.gov (United States)

    Caterino, M S; Reed, R D; Kuo, M M; Sperling, F A

    2001-02-01

    Although it is widely agreed that data from multiple sources are necessary to confidently resolve phylogenetic relationships, procedures for accommodating and incorporating heterogeneity in such data remain underdeveloped. We explored the use of partitioned, model-based analyses of heterogeneous molecular data in the context of a phylogenetic study of swallowtail butterflies (Lepidoptera: Papilionidae). Despite substantial basic and applied study, phylogenetic relationships among the major lineages of this prominent group remain contentious. We sequenced 3.3 kb of mitochondrial and nuclear DNA (2.3 kb of cytochrome oxidase I and II and 1.0 kb of elongation factor-1 alpha, respectively) from 22 swallowtails, including representatives of Baroniinae, Parnassiinae, and Papilioninae, and from several moth and butterfly outgroups. Using parsimony, we encountered considerable difficulty in resolving the deepest splits among these taxa. We therefore chose two outgroups with undisputed relationships to each other and to Papilionidae and undertook detailed likelihood analyses of alternative topologies. Following from previous studies that have demonstrated substantial heterogeneity in the evolutionary dynamics among process partitions of these genes, we estimated evolutionary parameters separately for gene-based and codon-based partitions. These values were then used as the basis for examining the likelihoods of possible resolutions and rootings under several partitioned and unpartitioned likelihood models. Partitioned models gave markedly better fits to the data than did unpartitioned models and supported different topologies. However, the most likely topology varied from model to model. The most likely ingroup topology under the best-fitting, six-partition GTR + gamma model favors a paraphyletic Parnassiinae. However, when examining the likelihoods of alternative rootings of this tree relative to rootings of the classical hypothesis, two rootings of the latter emerge as

  10. Comparison of Star and Ring Topologies for Entanglement Distribution

    OpenAIRE

    Hutton, A.; Bose, S.

    2002-01-01

    We investigate the differences between distributing entanglement using star and ring type network topologies. Assuming symmetrically distributed users, we asses the relative merits of the two network topologies as a function of the number of users when the amount of resources and the type of the quantum channel are kept fixed. For limited resources, we find that the topology better suited for entanglement distribution could differ from that which is more suitable for classical communications.

  11. Essentials of topology with applications

    CERN Document Server

    Krantz, Steven G

    2009-01-01

    Fundamentals What Is Topology? First Definitions Mappings The Separation Axioms Compactness Homeomorphisms Connectedness Path-Connectedness Continua Totally Disconnected Spaces The Cantor Set Metric Spaces Metrizability Baire's Theorem Lebesgue's Lemma and Lebesgue NumbersAdvanced Properties of Topological Spaces Basis and Sub-Basis Product Spaces Relative Topology First Countable, Second Countable, and So ForthCompactifications Quotient Topologies Uniformities Morse Theory Proper Mappings Paracompactness An Application to Digital ImagingBasic Algebraic Topology Homotopy Theory Homology Theory

  12. Gentile statistics and restricted partitions

    Indian Academy of Sciences (India)

    We generalise these results to obtain an asymptotic formula for the restricted or coloured partitions p k s ( n ) , which is the number of partitions of an integer into the summand of th powers of integers such that each power of a given integer may occur utmost times. While the method is not rigorous, it reproduces the ...

  13. Hashing for Statistics over K-Partitions

    DEFF Research Database (Denmark)

    Dahlgaard, Soren; Knudsen, Mathias Baek Tejs; Rotenberg, Eva

    2015-01-01

    In this paper we analyze a hash function for k-partitioning a set into bins, obtaining strong concentration bounds for standard algorithms combining statistics from each bin. This generic method was originally introduced by Flajolet and Martin [FOCS'83] in order to save a factor Ω(k) of time per...... element over k independent samples when estimating the number of distinct elements in a data stream. It was also used in the widely used Hyper Log Log algorithm of Flajolet et al. [AOFA'97] and in large-scale machine learning by Li et al. [NIPS'12] for minwise estimation of set similarity. The main issue...... concentration bounds on the most popular applications of k-partitioning similar to those we would get using a truly random hash function. The analysis is very involved and implies several new results of independent interest for both simple and double tabulation, e.g. A simple and efficient construction...

  14. Conformal thermal tensor network and universal entropy on topological manifolds

    Science.gov (United States)

    Chen, Lei; Wang, Hao-Xin; Wang, Lei; Li, Wei

    2017-11-01

    Thermal quantum critical systems, with partition functions expressed as conformal tensor networks, are revealed to exhibit universal entropy corrections on nonorientable manifolds. Through high-precision tensor network simulations of several quantum chains, we identify the universal entropy SK=lnk on the Klein bottle, where k relates to quantum dimensions of the primary fields in conformal field theory (CFT). Different from the celebrated Affleck-Ludwig boundary entropy lng (g reflects noninteger ground-state degeneracy), SK has n o boundary dependence or surface energy terms accompanying it, and can be very conveniently extracted from thermal data. On the Möbius-strip manifold, we uncover an entropy SM=1/2 (lng +lnk ) in CFT, where 1/2 lng is associated with the only open edge of the Möbius strip and 1/2 lnk is associated with the nonorientable topology. As a useful application, we employ the universal entropy to accurately pinpoint the quantum phase transitions, even for those without local order parameters.

  15. Topologies for optical interconnection networks based on the optical transpose interconnection system.

    Science.gov (United States)

    Coudert, D; Ferreira, A; Muñoz, X

    2000-06-10

    Many results exist in the literature describing technological and theoretical advances in optical network topologies and design. However, an essential effort has yet to be made in linking those results together. We propose a step in this direction by giving optical layouts for several graph-theoretical topologies studied in the literature, using the optical transpose interconnection system (OTIS) architecture. These topologies include the family of partitioned optical passive star (POPS) and stack-Kautz networks as well as a generalization of the Kautz and the de Bruijn digraphs.

  16. Topological entropy of autonomous flows

    Energy Technology Data Exchange (ETDEWEB)

    Badii, R. [Paul Scherrer Inst. (PSI), Villigen (Switzerland)

    1997-06-01

    When studying fluid dynamics, especially in a turbulent regime, it is crucial to estimate the number of active degrees of freedom or of localized structures in the system. The topological entropy quantifies the exponential growth of the number of `distinct` orbits in a dynamical system as a function of their length, in the infinite spatial resolution limit. Here, I illustrate a novel method for its evaluation, which extends beyond maps and is applicable to any system, including autonomous flows: these are characterized by lack of a definite absolute time scale for the orbit lengths. (author) 8 refs.

  17. Strain tuning of topological band order in cubic semiconductors

    Energy Technology Data Exchange (ETDEWEB)

    Feng, wanxiang [Chinese Academy of Sciences; Zhu, Wenguang [University of Tennessee, Knoxville (UTK); Weitering, Hanno [University of Tennessee, Knoxville (UTK); Stocks, George Malcolm [ORNL; Yao, yugui [Chinese Academy of Sciences; Xiao, Di [ORNL

    2012-01-01

    We theoretically explore the possibility of tuning the topological order of cubic diamond/zinc-blende semi- conductors with external strain. Based on a simple tight-binding model, we analyze the evolution of the cubic semiconductor band structure under hydrostatic or biaxial lattice expansion, by which a generic guiding princi- ple is established that biaxial lattice expansion can induce a topological phase transition of small band-gap cubic semiconductors via a band inversion and symmetry breaking at point. Using density functional theory cal- culations, we demonstrate that a prototype topological trivial semiconductor, InSb, is converted to a nontrivial topological semiconductor with a 2% 3% biaxial lattice expansion.

  18. p-topological Cauchy completions

    Directory of Open Access Journals (Sweden)

    J. Wig

    1999-01-01

    Full Text Available The duality between “regular” and “topological” as convergence space properties extends in a natural way to the more general properties “p-regular” and “p-topological.” Since earlier papers have investigated regular, p-regular, and topological Cauchy completions, we hereby initiate a study of p-topological Cauchy completions. A p-topological Cauchy space has a p-topological completion if and only if it is “cushioned,” meaning that each equivalence class of nonconvergent Cauchy filters contains a smallest filter. For a Cauchy space allowing a p-topological completion, it is shown that a certain class of Reed completions preserve the p-topological property, including the Wyler and Kowalsky completions, which are, respectively, the finest and the coarsest p-topological completions. However, not all p-topological completions are Reed completions. Several extension theorems for p-topological completions are obtained. The most interesting of these states that any Cauchy-continuous map between Cauchy spaces allowing p-topological and p′-topological completions, respectively, can always be extended to a θ-continuous map between any p-topological completion of the first space and any p′-topological completion of the second.

  19. Evolution of topological features in finite antiferromagnetic Heisenberg chains

    International Nuclear Information System (INIS)

    Chen Changfeng

    2003-01-01

    We examine the behavior of nonlocal topological order in finite antiferromagnetic Heisenberg chains using the density matrix renormalization group techniques. We find that chains with even and odd site parity show very different behavior in the topological string order parameter, reflecting interesting interplay of the intrinsic magnetic correlation and the topological term in the chains. Analysis of the calculated string order parameter as a function of the chain length and the topological angle indicates that S=1/2 and S=1 chains show special behavior while all S>1 chains have similar topological structure. This result supports an earlier conjecture on the classification of quantum spin chains based on an analysis of their phase diagrams. Implications of the topological behavior in finite quantum spin chains are discussed

  20. A topological approach to chemical organizations.

    Science.gov (United States)

    Benkö, Gil; Centler, Florian; Dittrich, Peter; Flamm, Christoph; Stadler, Bärbel M R; Stadler, Peter F

    2009-01-01

    Large chemical reaction networks often exhibit distinctive features that can be interpreted as higher-level structures. Prime examples are metabolic pathways in a biochemical context. We review mathematical approaches that exploit the stoichiometric structure, which can be seen as a particular directed hypergraph, to derive an algebraic picture of chemical organizations. We then give an alternative interpretation in terms of set-valued set functions that encapsulate the production rules of the individual reactions. From the mathematical point of view, these functions define generalized topological spaces on the set of chemical species. We show that organization-theoretic concepts also appear in a natural way in the topological language. This abstract representation in turn suggests the exploration of the chemical meaning of well-established topological concepts. As an example, we consider connectedness in some detail.

  1. Nonequilibrium green function approach to elastic and inelastic spin-charge transport in topological insulator-based heterostructures and magnetic tunnel junctions

    Science.gov (United States)

    Mahfouzi, Farzad

    ferromagnet (FM). I show that this could be due to the existence of Rashba spin-orbit coupling (SOC) at the interface of the FM and insulator. Assuming that the measured signals are quantum mechanical effect where a solution to the time dependent Schrodinger equation is required, I use Keldysh Green function formalism to introduce a "multi-photon" approach which takes into account the effects of time-dependent term exactly up to scatterings from a finite number of photons. We then proceed to find the corresponding Green function numerically using a recursive method which allows us to increase the size of the system significantly. We also implement other approximations such as adiabatic and rotating frame approaches and compared them with our approach. In Chapter 4, I investigate the spin and charge pumping from a precessing magnetization attached to the edge of a 2-dimensional topological insulator (2DTI). We show that, in this system a huge spin current (or voltage signal if the FM covers only one edge) can be pumped for very small cone angles of the precessing FM (proportional to the intensity of the applied microwave). In Chapter 5 I present the third project in this field of research, where, I investigated the pumping from FM attached to a 3-dimensional TI. Spin-transfer torque: Presented in Chapter 6, in this work I investigate the torque induced by a flow of spin-polarized current into a FM and check the condition in which it can cause the magnetization to flip. Motivated by recent experimental developments in the field, here I consider systems with strong SOC such as TIs within a magnetic tunnel junction (MTJ) heterostructure. In the theoretical part I show the correct way (as opposed to the conventional approach used in some theoretical works which suffers from violation of the gauge invariance) to calculate linear-response torque to the external applied voltage and for the numerical calculation I adopted a parallelized adaptive integration algorithm in order to take

  2. Inferring network topology from complex dynamics

    International Nuclear Information System (INIS)

    Shandilya, Srinivas Gorur; Timme, Marc

    2011-01-01

    Inferring the network topology from dynamical observations is a fundamental problem pervading research on complex systems. Here, we present a simple, direct method for inferring the structural connection topology of a network, given an observation of one collective dynamical trajectory. The general theoretical framework is applicable to arbitrary network dynamical systems described by ordinary differential equations. No interference (external driving) is required and the type of dynamics is hardly restricted in any way. In particular, the observed dynamics may be arbitrarily complex; stationary, invariant or transient; synchronous or asynchronous and chaotic or periodic. Presupposing a knowledge of the functional form of the dynamical units and of the coupling functions between them, we present an analytical solution to the inverse problem of finding the network topology from observing a time series of state variables only. Robust reconstruction is achieved in any sufficiently long generic observation of the system. We extend our method to simultaneously reconstructing both the entire network topology and all parameters appearing linear in the system's equations of motion. Reconstruction of network topology and system parameters is viable even in the presence of external noise that distorts the original dynamics substantially. The method provides a conceptually new step towards reconstructing a variety of real-world networks, including gene and protein interaction networks and neuronal circuits.

  3. On effective theories of topological strings

    International Nuclear Information System (INIS)

    Elitzur, S.; Forge, A.; Rabinovici, E.

    1992-01-01

    We study the construction of effective target-space theories of topological string theories. The example of the CP1 topological sigma model is analysed in detail. An effective target-space theory whose correlation functions are defined by the sum over connected Riemann surfaces of all genera is found to be itself topological. The values of the couplings of this effective theory are expressed in terms of those of the world-sheet theory for a general CP1-like world-sheet model. Any model of this type can be obtained as an effective theory. The definition of the effective theory's expectation values as a sum over disconnected surfaces as well, is shown not to be compatible with those of a topological theory, at least as long as the connectivity of the target space is kept fixed. Dilaton-type couplings emerge in the full lagrangian realization of the moduli space of topological theories with n observables. En route, we encounter a nonperturbative duality, an equivalence of theories with different world-sheets and discuss the relation between the cosmological constant in these finite theories and the zero-point function. (orig.)

  4. Algebraic topology a primer

    CERN Document Server

    Deo, Satya

    2018-01-01

    This book presents the first concepts of the topics in algebraic topology such as the general simplicial complexes, simplicial homology theory, fundamental groups, covering spaces and singular homology theory in greater detail. Originally published in 2003, this book has become one of the seminal books. Now, in the completely revised and enlarged edition, the book discusses the rapidly developing field of algebraic topology. Targeted to undergraduate and graduate students of mathematics, the prerequisite for this book is minimal knowledge of linear algebra, group theory and topological spaces. The book discusses about the relevant concepts and ideas in a very lucid manner, providing suitable motivations and illustrations. All relevant topics are covered, including the classical theorems like the Brouwer’s fixed point theorem, Lefschetz fixed point theorem, Borsuk-Ulam theorem, Brouwer’s separation theorem and the theorem on invariance of the domain. Most of the exercises are elementary, but sometimes chal...

  5. Topology optimized microbioreactors

    DEFF Research Database (Denmark)

    Schäpper, Daniel; Lencastre Fernandes, Rita; Eliasson Lantz, Anna

    2011-01-01

    This article presents the fusion of two hitherto unrelated fields—microbioreactors and topology optimization. The basis for this study is a rectangular microbioreactor with homogeneously distributed immobilized brewers yeast cells (Saccharomyces cerevisiae) that produce a recombinant protein....... Topology optimization is then used to change the spatial distribution of cells in the reactor in order to optimize for maximal product flow out of the reactor. This distribution accounts for potentially negative effects of, for example, by-product inhibition. We show that the theoretical improvement...... in productivity is at least fivefold compared with the homogeneous reactor. The improvements obtained by applying topology optimization are largest where either nutrition is scarce or inhibition effects are pronounced....

  6. Architecture, Drawing, Topology

    DEFF Research Database (Denmark)

    This book presents contributions of drawing and text along with their many relationalities from ontology to history and vice versa in a range of reflections on architecture, drawing and topology. We hope to thereby indicate the potential of the theme in understanding not only the architecture...... of today, but – perhaps most importantly – also creating and producing architecture that is contemporaneous and reacts to the radical changes of the physical world which surrounds us in the increasingly artificial measures of new materialities and understandings thereof. The contributions range from...... the intricate issues of the imagination and the moving ratio in the topological culture, over urban topology, diagrammatisation, mediality and dynamics of transduction in the contemporary artificial environment....

  7. Riemann, topology, and physics

    CERN Document Server

    Monastyrsky, Michael I

    2008-01-01

    This significantly expanded second edition of Riemann, Topology, and Physics combines a fascinating account of the life and work of Bernhard Riemann with a lucid discussion of current interaction between topology and physics. The author, a distinguished mathematical physicist, takes into account his own research at the Riemann archives of Göttingen University and developments over the last decade that connect Riemann with numerous significant ideas and methods reflected throughout contemporary mathematics and physics. Special attention is paid in part one to results on the Riemann–Hilbert problem and, in part two, to discoveries in field theory and condensed matter such as the quantum Hall effect, quasicrystals, membranes with nontrivial topology, "fake" differential structures on 4-dimensional Euclidean space, new invariants of knots and more. In his relatively short lifetime, this great mathematician made outstanding contributions to nearly all branches of mathematics; today Riemann’s name appears prom...

  8. Topology, calculus and approximation

    CERN Document Server

    Komornik, Vilmos

    2017-01-01

    Presenting basic results of topology, calculus of several variables, and approximation theory which are rarely treated in a single volume, this textbook includes several beautiful, but almost forgotten, classical theorems of Descartes, Erdős, Fejér, Stieltjes, and Turán. The exposition style of Topology, Calculus and Approximation follows the Hungarian mathematical tradition of Paul Erdős and others. In the first part, the classical results of Alexandroff, Cantor, Hausdorff, Helly, Peano, Radon, Tietze and Urysohn illustrate the theories of metric, topological and normed spaces. Following this, the general framework of normed spaces and Carathéodory's definition of the derivative are shown to simplify the statement and proof of various theorems in calculus and ordinary differential equations. The third and final part is devoted to interpolation, orthogonal polynomials, numerical integration, asymptotic expansions and the numerical solution of algebraic and differential equations. Students of both pure an...

  9. The Topological Vertex

    CERN Document Server

    Aganagic, M; Marino, M; Vafa, C; Aganagic, Mina; Klemm, Albrecht; Marino, Marcos; Vafa, Cumrun

    2005-01-01

    We construct a cubic field theory which provides all genus amplitudes of the topological A-model for all non-compact Calabi-Yau toric threefolds. The topology of a given Feynman diagram encodes the topology of a fixed Calabi-Yau, with Schwinger parameters playing the role of Kahler classes of Calabi-Yau. We interpret this result as an operator computation of the amplitudes in the B-model mirror which is the Kodaira-Spencer quantum theory. The only degree of freedom of this theory is an unconventional chiral scalar on a Riemann surface. In this setup we identify the B-branes on the mirror Riemann surface as fermions related to the chiral boson by bosonization.

  10. Nω –CLOSED SETS IN NEUTROSOPHIC TOPOLOGICAL SPACES

    Directory of Open Access Journals (Sweden)

    Santhi R.

    2016-08-01

    Full Text Available Neutrosophic set and Neutrosophic Topological spaces has been introduced by Salama. Neutrosophic Closed set and Neutrosophic Continuous Functions were introduced by Salama et. al.. In this paper, we introduce the concept of Nω- closed sets and their properties in Neutrosophic topological spaces.

  11. Issues related to topology optimization of snap-through problems

    DEFF Research Database (Denmark)

    Lindgaard, Esben; Dahl, Jonas

    2012-01-01

    This work focuses on issues related to topology optimization of static geometrically nonlinear structures experiencing snap-through behaviour. Different compliance and buckling criterion functions are studied and applied to topology optimization of a point loaded curved beam problem with the aim...

  12. Topological color code and symmetry-protected topological phases

    Science.gov (United States)

    Yoshida, Beni

    2015-06-01

    We study (d -1 ) -dimensional excitations in the d -dimensional color code that are created by transversal application of the Rd phase operators on connected subregions of qubits. We find that such excitations are the superpositions of electric charges and can be characterized by the fixed-point wave functions of (d -1 ) -dimensional bosonic symmetry-protected topological (SPT) phases with (Z2) ⊗d symmetry. While these SPT excitations are localized on (d -1 ) -dimensional boundaries, their creation requires operations acting on all qubits inside the boundaries, reflecting the nontriviality of emerging SPT wave functions. Moreover, these SPT excitations can be physically realized as transparent gapped domain walls which exchange excitations in the color code. Namely, in the three-dimensional color code, the domain wall, associated with the transversal R3 operator, exchanges a magnetic flux and a composite of a magnetic flux and the looplike SPT excitation, revealing rich possibilities of boundaries in higher-dimensional TQFTs. We also find that magnetic fluxes and the looplike SPT excitations exhibit nontrivial three-loop braiding statistics in three dimensions as a result of the fact that the R3 phase operator belongs to the third level of the Clifford hierarchy. We believe that the connection between SPT excitations, fault-tolerant logical gates and gapped domain walls, established in this paper, can be generalized to a large class of topological quantum codes and TQFTs.

  13. Stochastic Graph Partition: Generalizing the Swendsen-Wang Method

    OpenAIRE

    Barbu, Adrian; Zhu, Song-Chun

    2003-01-01

    Vision tasks, such as segmentation, grouping, recognition, and learning, have a "what-goes-with-what" component. It can be formulated as partitioning an adjacent graph into a number of subgraphs, each being a "coherent" visual pattern in the sense of optimizing a Bayesian posterior probability or minimizing an energy functional. In this paper, we generalize Swendsen-Wang (1987)- a well celebrated algorithm in statistical mechanics-for general graph partition. Our objective is to design revers...

  14. Filters in topology optimization

    DEFF Research Database (Denmark)

    Bourdin, Blaise

    1999-01-01

    In this article, a modified (``filtered'') version of the minimum compliance topology optimization problem is studied. The direct dependence of the material properties on its pointwise density is replaced by a regularization of the density field using a convolution operator. In this setting...... it is possible to establish the existence of solutions. Moreover, convergence of an approximation by means of finite elements can be obtained. This is illustrated through some numerical experiments. The ``filtering'' technique is also shown to cope with two important numerical problems in topology optimization...

  15. Topological approximations of multisets

    Directory of Open Access Journals (Sweden)

    El-Sayed A. Abo-Tabl

    2013-07-01

    Full Text Available Rough set theory is a powerful mathematical tool for dealing with inexact, uncertain or vague information. The core concept of rough set theory are information systems and approximation operators of approximation spaces. In this paper, we define and investigate three types of lower and upper multiset approximations of any multiset. These types based on the multiset base of multiset topology induced by a multiset relation. Moreover, the relationships between generalized rough msets and mset topologies are given. In addition, an illustrative example is given to illustrate the relationships between different types of generalized definitions of rough multiset approximations.

  16. Topology in Condensed Matter

    CERN Document Server

    Monastyrsky, M I

    2006-01-01

    This book reports new results in condensed matter physics for which topological methods and ideas are important. It considers, on the one hand, recently discovered systems such as carbon nanocrystals and, on the other hand, new topological methods used to describe more traditional systems such as the Fermi surfaces of normal metals, liquid crystals and quasicrystals. The authors of the book are renowned specialists in their fields and present the results of ongoing research, some of it obtained only very recently and not yet published in monograph form.

  17. Donaldson-Witten theory and indefinite theta functions

    Science.gov (United States)

    Korpas, Georgios; Manschot, Jan

    2017-11-01

    We consider partition functions with insertions of surface operators of topologically twisted N=2 , SU(2) supersymmetric Yang-Mills theory, or Donaldson-Witten theory for short, on a four-manifold. If the metric of the compact four-manifold has positive scalar curvature, Moore and Witten have shown that the partition function is completely determined by the integral over the Coulomb branch parameter a, while more generally the Coulomb branch integral captures the wall-crossing behavior of both Donaldson polynomials and Seiberg-Witten invariants. We show that after addition of a \\overlineQ -exact surface operator to the Moore-Witten integrand, the integrand can be written as a total derivative to the anti-holomorphic coordinate ā using Zwegers' indefinite theta functions. In this way, we reproduce Göttsche's expressions for Donaldson invariants of rational surfaces in terms of indefinite theta functions for any choice of metric.

  18. Biogeography of time partitioning in mammals.

    Science.gov (United States)

    Bennie, Jonathan J; Duffy, James P; Inger, Richard; Gaston, Kevin J

    2014-09-23

    Many animals regulate their activity over a 24-h sleep-wake cycle, concentrating their peak periods of activity to coincide with the hours of daylight, darkness, or twilight, or using different periods of light and darkness in more complex ways. These behavioral differences, which are in themselves functional traits, are associated with suites of physiological and morphological adaptations with implications for the ecological roles of species. The biogeography of diel time partitioning is, however, poorly understood. Here, we document basic biogeographic patterns of time partitioning by mammals and ecologically relevant large-scale patterns of natural variation in "illuminated activity time" constrained by temperature, and we determine how well the first of these are predicted by the second. Although the majority of mammals are nocturnal, the distributions of diurnal and crepuscular species richness are strongly associated with the availability of biologically useful daylight and twilight, respectively. Cathemerality is associated with relatively long hours of daylight and twilight in the northern Holarctic region, whereas the proportion of nocturnal species is highest in arid regions and lowest at extreme high altitudes. Although thermal constraints on activity have been identified as key to the distributions of organisms, constraints due to functional adaptation to the light environment are less well studied. Global patterns in diversity are constrained by the availability of the temporal niche; disruption of these constraints by the spread of artificial lighting and anthropogenic climate change, and the potential effects on time partitioning, are likely to be critical influences on species' future distributions.

  19. Linear topologies and sequential compactness in topological modules

    African Journals Online (AJOL)

    We prove that an absolute semi-valued ring is rst-countable if the set of invertibles is separable and its closure contains 0. We also show that every linearly topologized topological module over an absolute semi-valued ring whose invertibles approach 0 has the trivial topology. We also show that every sequentially compact ...

  20. N=2 topological gauge theory, the Euler characteristic of moduli spaces, and the Casson invariant

    International Nuclear Information System (INIS)

    Blau, M.; Thompson, G.

    1991-11-01

    Gauge theory with a topological N=2 symmetry is discussed. This theory captures the de Rahm complex and Riemannian geometry of some underlying moduli space M and the partition function equals the Euler number χ (M) of M. Moduli spaces of instantons and of flat connections in 2 and 3 dimensions are explicitly dealt with. To motivate the constructions the relation between the Mathai-Quillen formalism and supersymmetric quantum mechanics are explained and a new kind of supersymmetric quantum mechanics is introduced, based on the Gauss-Codazzi equations. The gauge theory actions are interpreted from the Atiyah-Jeffrey point of view and related to super-symmetric quantum mechanics on spaces of connections. As a consequence of these considerations the Euler number χ (M) of the moduli space of flat connections as a generalization to arbitrary three-manifolds of the Casson invariant. The possibility of constructing a topological version of the Penner matrix model is also commented. (author). 63 refs

  1. Topological field theories and duality

    International Nuclear Information System (INIS)

    Stephany, J.; Universidad Simon Bolivar, Caracas

    1996-05-01

    Topologically non trivial effects appearing in the discussion of duality transformations in higher genus manifold are discussed in a simple example, and their relation with the properties of Topological Field Theories is established. (author). 16 refs

  2. Topology optimization of viscoelastic rectifiers

    DEFF Research Database (Denmark)

    Jensen, Kristian Ejlebjærg; Szabo, Peter; Okkels, Fridolin

    2012-01-01

    An approach for the design of microfluidic viscoelastic rectifiers is presented based on a combination of a viscoelastic model and the method of topology optimization. This presumption free approach yields a material layout topologically different from experimentally realized rectifiers...

  3. Coherence Multiplex System Topologies

    NARCIS (Netherlands)

    Meijerink, Arjan; Taniman, R.O.; Heideman, G.H.L.M.; van Etten, Wim

    2007-01-01

    Coherence multiplexing is a potentially inexpensive form of optical code-division multiple access, which is particularly suitable for short-range applications with moderate bandwidth requirements, such as access networks, LANs, or interconnects. Various topologies are known for constructing an

  4. Architecture, Drawing, Topology

    DEFF Research Database (Denmark)

    This book presents contributions of drawing and text along with their many relationalities from ontology to history and vice versa in a range of reflections on architecture, drawing and topology. We hope to thereby indicate the potential of the theme in understanding not only the architecture...

  5. Towards topological quantum computer

    Science.gov (United States)

    Melnikov, D.; Mironov, A.; Mironov, S.; Morozov, A.; Morozov, An.

    2018-01-01

    Quantum R-matrices, the entangling deformations of non-entangling (classical) permutations, provide a distinguished basis in the space of unitary evolutions and, consequently, a natural choice for a minimal set of basic operations (universal gates) for quantum computation. Yet they play a special role in group theory, integrable systems and modern theory of non-perturbative calculations in quantum field and string theory. Despite recent developments in those fields the idea of topological quantum computing and use of R-matrices, in particular, practically reduce to reinterpretation of standard sets of quantum gates, and subsequently algorithms, in terms of available topological ones. In this paper we summarize a modern view on quantum R-matrix calculus and propose to look at the R-matrices acting in the space of irreducible representations, which are unitary for the real-valued couplings in Chern-Simons theory, as the fundamental set of universal gates for topological quantum computer. Such an approach calls for a more thorough investigation of the relation between topological invariants of knots and quantum algorithms.

  6. Slope constrained Topology Optimization

    DEFF Research Database (Denmark)

    Petersson, J.; Sigmund, Ole

    1998-01-01

    The problem of minimum compliance topology optimization of an elastic continuum is considered. A general continuous density-energy relation is assumed, including variable thickness sheet models and artificial power laws. To ensure existence of solutions, the design set is restricted by enforcing...

  7. Counterexamples in topology

    CERN Document Server

    Steen, Lynn Arthur

    1978-01-01

    Over 140 examples, preceded by a succinct exposition of general topology and basic terminology. Each example treated as a whole. Over 25 Venn diagrams and charts summarize properties of the examples, while discussions of general methods of construction and change give readers insight into constructing counterexamples. Includes problems and exercises, correlated with examples. Bibliography. 1978 edition.

  8. LHCb Topological Trigger Reoptimization

    CERN Document Server

    INSPIRE-00400931; Ilten, Philip; Khairullin, Egor; Rogozhnikov, Alex; Ustyuzhanin, Andrey; Williams, Michael

    2015-12-23

    The main b-physics trigger algorithm used by the LHCb experiment is the so-called topological trigger. The topological trigger selects vertices which are a) detached from the primary proton-proton collision and b) compatible with coming from the decay of a b-hadron. In the LHC Run 1, this trigger, which utilized a custom boosted decision tree algorithm, selected a nearly 100% pure sample of b-hadrons with a typical efficiency of 60-70%; its output was used in about 60% of LHCb papers. This talk presents studies carried out to optimize the topological trigger for LHC Run 2. In particular, we have carried out a detailed comparison of various machine learning classifier algorithms, e.g., AdaBoost, MatrixNet and neural networks. The topological trigger algorithm is designed to select all "interesting" decays of b-hadrons, but cannot be trained on every such decay. Studies have therefore been performed to determine how to optimize the performance of the classification algorithm on decays not used in the training. ...

  9. Towards topological quantum computer

    Directory of Open Access Journals (Sweden)

    D. Melnikov

    2018-01-01

    Full Text Available Quantum R-matrices, the entangling deformations of non-entangling (classical permutations, provide a distinguished basis in the space of unitary evolutions and, consequently, a natural choice for a minimal set of basic operations (universal gates for quantum computation. Yet they play a special role in group theory, integrable systems and modern theory of non-perturbative calculations in quantum field and string theory. Despite recent developments in those fields the idea of topological quantum computing and use of R-matrices, in particular, practically reduce to reinterpretation of standard sets of quantum gates, and subsequently algorithms, in terms of available topological ones. In this paper we summarize a modern view on quantum R-matrix calculus and propose to look at the R-matrices acting in the space of irreducible representations, which are unitary for the real-valued couplings in Chern–Simons theory, as the fundamental set of universal gates for topological quantum computer. Such an approach calls for a more thorough investigation of the relation between topological invariants of knots and quantum algorithms.

  10. Topological Trigger Developments

    CERN Multimedia

    Likhomanenko, Tatiana

    2015-01-01

    The main b-physics trigger algorithm used by the LHCb experiment is the so-called topological trigger. The topological trigger selects vertices which are a) detached from the primary proton-proton collision and b) compatible with coming from the decay of a b-hadron. In the LHC Run 1, this trigger utilized a custom boosted decision tree algorithm, selected an almost 100% pure sample of b-hadrons with a typical efficiency of 60-70%, and its output was used in about 60% of LHCb papers. This talk presents studies carried out to optimize the topological trigger for LHC Run 2. In particular, we have carried out a detailed comparison of various machine learning classifier algorithms, e.g., AdaBoost, MatrixNet and uBoost. The topological trigger algorithm is designed to select all "interesting" decays of b-hadrons, but cannot be trained on every such decay. Studies have therefore been performed to determine how to optimize the performance of the classification algorithm on decays not used in the training. These inclu...

  11. Rendering the Topological Spines

    Energy Technology Data Exchange (ETDEWEB)

    Nieves-Rivera, D. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-05-05

    Many tools to analyze and represent high dimensional data already exits yet most of them are not flexible, informative and intuitive enough to help the scientists make the corresponding analysis and predictions, understand the structure and complexity of scientific data, get a complete picture of it and explore a greater number of hypotheses. With this in mind, N-Dimensional Data Analysis and Visualization (ND²AV) is being developed to serve as an interactive visual analysis platform with the purpose of coupling together a number of these existing tools that range from statistics, machine learning, and data mining, with new techniques, in particular with new visualization approaches. My task is to create the rendering and implementation of a new concept called topological spines in order to extend ND²AV's scope. Other existing visualization tools create a representation preserving either the topological properties or the structural (geometric) ones because it is challenging to preserve them both simultaneously. Overcoming such challenge by creating a balance in between them, the topological spines are introduced as a new approach that aims to preserve them both. Its render using OpenGL and C++ and is currently being tested to further on be implemented on ND²AV. In this paper I will present what are the Topological Spines and how they are rendered.

  12. Adjoint entropy vs topological entropy

    OpenAIRE

    Giordano Bruno, Anna

    2012-01-01

    Recently the adjoint algebraic entropy of endomorphisms of abelian groups was introduced and studied. We generalize the notion of adjoint entropy to continuous endomorphisms of topological abelian groups. Indeed, the adjoint algebraic entropy is defined using the family of all finite-index subgroups, while we take only the subfamily of all open finite-index subgroups to define the topological adjoint entropy. This allows us to compare the (topological) adjoint entropy with the known topologic...

  13. On cohomology theory for topological groups

    Indian Academy of Sciences (India)

    outlines deep conjectures explaining the special values of zeta functions of varieties in terms of Weil-étale cohomology. Here the cohomology of the generic fibre turns out to be the cohomology of the Weil group. Lichtenbaum studies the cohomology theory of topological groups from an abstract viewpoint based on the work ...

  14. Topology Optimisation for Coupled Convection Problems

    DEFF Research Database (Denmark)

    Alexandersen, Joe; Andreasen, Casper Schousboe; Aage, Niels

    the widely used Brinkman-penalisation approach to fluid topology optimisation [2] combined with suitable interpolation functions for thermal conductivity. The Method of Moving Asymptotes (MMA) is used and density filtering is applied in order to ensure a minimum lengthscale. The results are generated using...

  15. Mean value theorem in topological vector spaces

    International Nuclear Information System (INIS)

    Khan, L.A.

    1994-08-01

    The aim of this note is to give shorter proofs of the mean value theorem, the mean value inequality, and the mean value inclusion for the class of Gateaux differentiable functions having values in a topological vector space. (author). 6 refs

  16. Topological invariants in nonlinear boundary value problems

    International Nuclear Information System (INIS)

    Vinagre, Sandra; Severino, Ricardo; Ramos, J. Sousa

    2005-01-01

    We consider a class of boundary value problems for partial differential equations, whose solutions are, basically, characterized by the iteration of a nonlinear function. We apply methods of symbolic dynamics of discrete bimodal maps in the interval in order to give a topological characterization of its solutions

  17. A Similarity Search Using Molecular Topological Graphs

    Directory of Open Access Journals (Sweden)

    Yoshifumi Fukunishi

    2009-01-01

    Full Text Available A molecular similarity measure has been developed using molecular topological graphs and atomic partial charges. Two kinds of topological graphs were used. One is the ordinary adjacency matrix and the other is a matrix which represents the minimum path length between two atoms of the molecule. The ordinary adjacency matrix is suitable to compare the local structures of molecules such as functional groups, and the other matrix is suitable to compare the global structures of molecules. The combination of these two matrices gave a similarity measure. This method was applied to in silico drug screening, and the results showed that it was effective as a similarity measure.

  18. Bistable Topological Insulator with Exciton-Polaritons

    Science.gov (United States)

    Kartashov, Yaroslav V.; Skryabin, Dmitry V.

    2017-12-01

    The functionality of many nonlinear and quantum optical devices relies on the effect of optical bistability. Using microcavity exciton-polaritons in a honeycomb arrangement of microcavity pillars, we report the resonance response and bistability of topological edge states. A balance between the pump, loss, and nonlinearity ensures a broad range of dynamical stability and controls the distribution of power between counterpropagating states on the opposite edges of the honeycomb lattice stripe. Tuning energy and polarization of the pump photons, while keeping their momentum constant, we demonstrate control of the propagation direction of the dominant edge state. Our results facilitate the development of practical applications of topological photonics.

  19. Systematic design of microstructures by topology optimization

    DEFF Research Database (Denmark)

    Sigmund, Ole

    2003-01-01

    The topology optimization method can be used to determine the material distribution in a design domain such that an objective function is maximized and constraints are fulfilled. The method which is based on Finite Element Analysis may be applied to all kinds of material distribution problems like...... extremal material design, sensor and actuator design and MEMS synthesis. The state-of-the-art in topology optimization will be reviewed and older as well as new applications in phononic and photonic crystals design will be presented....

  20. Two-dimensional fermionic correlations in topologically nontrivial backgrounds

    Energy Technology Data Exchange (ETDEWEB)

    Manias, M.V.; Naon, C.M.; Trobo, M.L. (Departamento de Fisica, Universidad Nacional de La Plata, Casilla de Correo No. 67, 1900 La Plata, Buenos Aires (Argentina))

    1993-04-15

    By using a path-integral approach to the study of two-dimensional massless fermionic models in nontrivial sectors, we compute certain special correlation functions which are nonvanishing only when nontrivial topology is taken into account. In particular, we derive the first explicit expression for the so-called nonminimal Green's function. We introduce one specific topological charge distribution for which this correlation function takes a simple form. We also comment on the application of our results to the analysis of massive fermions in topological backgrounds.

  1. Superconductivity Bordering Rashba Type Topological Transition

    Energy Technology Data Exchange (ETDEWEB)

    Jin, M. L.; Sun, F.; Xing, L. Y.; Zhang, S. J.; Feng, S. M.; Kong, P. P.; Li, W. M.; Wang, X. C.; Zhu, J. L.; Long, Y. W.; Bai, H. Y.; Gu, C. Z.; Yu, R. C.; Yang, W. G.; Shen, G. Y.; Zhao, Y. S.; Mao, H. K.; Jin, C. Q.

    2017-01-04

    Strong spin orbital interaction (SOI) can induce unique quantum phenomena such as topological insulators, the Rashba effect, or p-wave superconductivity. Combining these three quantum phenomena into a single compound has important scientific implications. Here we report experimental observations of consecutive quantum phase transitions from a Rashba type topological trivial phase to topological insulator state then further proceeding to superconductivity in a SOI compound BiTeI tuned via pressures. The electrical resistivity measurement with V shape change signals the transition from a Rashba type topological trivial to a topological insulator phase at 2 GPa, which is caused by an energy gap close then reopen with band inverse. Superconducting transition appears at 8 GPa with a critical temperature TC of 5.3 K. Structure refinements indicate that the consecutive phase transitions are correlated to the changes in the Bi–Te bond and bond angle as function of pressures. The Hall Effect measurements reveal an intimate relationship between superconductivity and the unusual change in carrier density that points to possible unconventional superconductivity.

  2. Topology of Document Retrieval Systems.

    Science.gov (United States)

    Everett, Daniel M.; Cater, Steven C.

    1992-01-01

    Explains the use of a topological structure to examine the closeness between documents in retrieval systems and analyzes the topological structure of a vector-space model, a fuzzy-set model, an extended Boolean model, a probabilistic model, and a TIRS (Topological Information Retrieval System) model. Proofs for the results are appended. (17…

  3. Noncommuting Momenta of Topological Solitons

    Science.gov (United States)

    Watanabe, Haruki; Murayama, Hitoshi

    2014-05-01

    We show that momentum operators of a topological soliton may not commute among themselves when the soliton is associated with the second cohomology H2 of the target space. The commutation relation is proportional to the winding number, taking a constant value within each topological sector. The noncommutativity makes it impossible to specify the momentum of a topological soliton, and induces a Magnus force.

  4. Topological Properties of Superconducting Junctions

    NARCIS (Netherlands)

    Pikulin, D.I.; Nazarov, Y.V.

    Motivated by recent developments in the field of one-dimensional topological superconductors, we investigate the topological properties of s-matrix of generic superconducting junctions where dimension should not play any role. We argue that for a finite junction the s-matrix is always topologically

  5. Topological mass mechanism and exact fields mapping

    International Nuclear Information System (INIS)

    Amaral, R L P G; Ventura, O S; Buffon, L O; Costa, J V

    2006-01-01

    We present a class of mappings between models with topological mass mechanism and purely topological models in arbitrary dimensions. These mappings are established by directly mapping the fields of one model in terms of the fields of the other model in closed expressions. These expressions provide the mappings of their actions as well as the mappings of their propagators. For a general class of models in which the topological model becomes the BF model the mappings present arbitrary functions which otherwise are absent for Chern-Simons like actions. This work generalizes the results of (Ventura O S, Amaral R L P G, Costa J V, Buffon L O and Lemes V E R 2004 J. Phys. A: Math. Gen. 37 11711-23) for arbitrary dimensions

  6. A topological introduction to nonlinear analysis

    CERN Document Server

    Brown, Robert F

    2014-01-01

    This third edition of A Topological Introduction to Nonlinear Analysis is addressed to the mathematician or graduate student of mathematics - or even the well-prepared undergraduate - who would like, with a minimum of background and preparation, to understand some of the beautiful results at the heart of nonlinear analysis. Based on carefully-expounded ideas from several branches of topology, and illustrated by a wealth of figures that attest to the geometric nature of the exposition, the book will be of immense help in providing its readers with an understanding of the mathematics of the nonlinear phenomena that characterize our real world. For this third edition, several new chapters present the fixed point index and its applications. The exposition and mathematical content is improved throughout. This book is ideal for self-study for mathematicians and students interested in such areas of geometric and algebraic topology, functional analysis, differential equations, and applied mathematics. It is a sharply...

  7. Topological mass mechanism and exact fields mapping

    Energy Technology Data Exchange (ETDEWEB)

    Amaral, R L P G [Instituto de Fisica, Universidade Federal Fluminense, 24210-340, Niteroi, RJ (Brazil); Ventura, O S [Coordenadoria de Matematica, Centro Federal de Educacao Tecnologica do EspIrito Santo, Avenida Vitoria 1729 - Jucutuquara, Vitoria, ES, 29040-333 (Brazil); Centro Universitario de Vila Velha, Rua comissario Jose, Dantas de Mello 15, Boa Vista, Vila Velha, ES, 29102-770 (Brazil); Buffon, L O [Centro Universitario de Vila Velha, Rua comissario Jose, Dantas de Mello 15, Boa Vista, Vila Velha, ES, 29102-770 (Brazil); Escola Superior de Ciencias da Santa Casa de Misericordia de Vitoria, Av. Nossa Senhora da Penha 2190, Santa Luiza, Vitoria-ES, 29045-402 (Brazil); Costa, J V [Instituto de Fisica, Universidade Federal Fluminense, 24210-340, Niteroi, RJ (Brazil); FAESA, Campus I, Rua Anselmo Serrat, 199, Ilha Monte Belo, Vitoria-ES, 29040-410 (Brazil)

    2006-01-27

    We present a class of mappings between models with topological mass mechanism and purely topological models in arbitrary dimensions. These mappings are established by directly mapping the fields of one model in terms of the fields of the other model in closed expressions. These expressions provide the mappings of their actions as well as the mappings of their propagators. For a general class of models in which the topological model becomes the BF model the mappings present arbitrary functions which otherwise are absent for Chern-Simons like actions. This work generalizes the results of (Ventura O S, Amaral R L P G, Costa J V, Buffon L O and Lemes V E R 2004 J. Phys. A: Math. Gen. 37 11711-23) for arbitrary dimensions.

  8. Designing topological defects in 2D materials using scanning probe microscopy and a self-healing mechanism: a density functional-based molecular dynamics study

    Science.gov (United States)

    Popov, Igor; Đurišić, Ivana; Belić, Milivoj R.

    2017-12-01

    Engineering of materials at the atomic level is one of the most important aims of nanotechnology. The unprecedented ability of scanning probe microscopy to address individual atoms opened up the possibilities for nanomanipulation and nanolitography of surfaces and later on of two-dimensional materials. While the state-of-the-art scanning probe lithographic methods include, primarily, adsorption, desorption and repositioning of adatoms and molecules on substrates or tailoring nanoribbons by etching of trenches, the precise modification of the intrinsic atomic structure of materials is yet to be advanced. Here we introduce a new concept, scanning probe microscopy with a rotating tip, for engineering of the atomic structure of membranes based on two-dimensional materials. In order to indicate the viability of the concept, we present our theoretical research, which includes atomistic modeling, molecular dynamics simulations, Fourier analysis and electronic transport calculations. While stretching can be employed for fabrication of atomic chains only, our comprehensive molecular dynamics simulations indicate that nanomanipulation by scanning probe microscopy with a rotating tip is capable of assembling a wide range of topological defects in two-dimensional materials in a rather controllable and reproducible manner. We analyze two possibilities. In the first case the probe tip is retracted from the membrane while in the second case the tip is released beneath the membrane allowing graphene to freely relax and self-heal the pore made by the tip. The former approach with the tip rotation can be achieved experimentally by rotation of the sample, which is equivalent to rotation of the tip, whereas irradiation of the membrane by nanoclusters can be utilized for the latter approach. The latter one has the potential to yield a yet richer diversity of topological defects on account of a lesser determinacy. If successfully realized experimentally the concept proposed here could

  9. Hawk: A Runtime System for Partitioned Objects

    NARCIS (Netherlands)

    Ben Hassen, S.; Bal, H.E.; Tanenbaum, A.S.

    1997-01-01

    Hawk is a language-independent runtime system for writing data-parallel programs using partitioned objects. A partitioned object is a multidimensional array of elements that can be partitioned and distributed by the programmer. The Hawk runtime system uses the user-defined partitioning of objects

  10. Minimum nonuniform graph partitioning with unrelated weights

    Science.gov (United States)

    Makarychev, K. S.; Makarychev, Yu S.

    2017-12-01

    We give a bi-criteria approximation algorithm for the Minimum Nonuniform Graph Partitioning problem, recently introduced by Krauthgamer, Naor, Schwartz and Talwar. In this problem, we are given a graph G=(V,E) and k numbers ρ_1,\\dots, ρ_k. The goal is to partition V into k disjoint sets (bins) P_1,\\dots, P_k satisfying \\vert P_i\\vert≤ ρi \\vert V\\vert for all i, so as to minimize the number of edges cut by the partition. Our bi-criteria algorithm gives an O(\\sqrt{log \\vert V\\vert log k}) approximation for the objective function in general graphs and an O(1) approximation in graphs excluding a fixed minor. The approximate solution satisfies the relaxed capacity constraints \\vert P_i\\vert ≤ (5+ \\varepsilon)ρi \\vert V\\vert. This algorithm is an improvement upon the O(log \\vert V\\vert)-approximation algorithm by Krauthgamer, Naor, Schwartz and Talwar. We extend our results to the case of 'unrelated weights' and to the case of 'unrelated d-dimensional weights'. A preliminary version of this work was presented at the 41st International Colloquium on Automata, Languages and Programming (ICALP 2014). Bibliography: 7 titles.

  11. TOPOLOGICAL LOCALISATION OF DEFECTS AT ATOMIC SCALE

    Directory of Open Access Journals (Sweden)

    Jean-Paul Jernot

    2011-05-01

    Full Text Available The problem addressed in this paper is the detection of defects on atomic structures. The procedure proposed is in two steps. At first a tessellation is built starting from the atoms. It consists of a partition of the space into cells, and is used to define the neighbourhood relationships between the atoms. Then, the local contribution to a topological parameter, namely the Euler-Poincare characteristic, is defined and measured for each cell. Within a regular tessellation, made of identical cells, this local contribution is equal to zero. Any local deviation from regularity corresponds to a tessellation containing cells with non-zero contributions. This allows us to locate the defects from a topological criterion and opens the way to a fully automatic detection of interfaces at atomic scale. The procedure is applied in 2D space for the detection of edge dislocations, grain boundaries and twins from HREM models and images. A 3D example is also given to illustrate its generality.

  12. Topology optimized permanent magnet systems

    DEFF Research Database (Denmark)

    Bjørk, Rasmus; Bahl, Christian; Insinga, Andrea Roberto

    2017-01-01

    Topology optimization of permanent magnet systems consisting of permanent magnets, high permeability iron and air is presented. An implementation of topology optimization for magnetostatics is discussed and three examples are considered. The Halbach cylinder is topology optimized with iron...... and an increase of 15% in magnetic efficiency is shown. A topology optimized structure to concentrate a homogeneous field is shown to increase the magnitude of the field by 111%. Finally, a permanent magnet with alternating high and low field regions is topology optimized and a ΛcoolΛcool figure of merit of 0...

  13. Undergraduate topology a working textbook

    CERN Document Server

    McCluskey, Aisling

    2014-01-01

    This textbook offers an accessible, modern introduction at undergraduate level to an area known variously as general topology, point-set topology or analytic topology with a particular focus on helping students to build theory for themselves. It is the result of several years of the authors' combined university teaching experience stimulated by sustained interest in advanced mathematical thinking and learning, alongside established research careers in analytic topology. Point-set topology is a discipline that needs relatively little background knowledge, but sufficient determination to grasp i

  14. Games for Topological Fixpoint Logic

    Directory of Open Access Journals (Sweden)

    Nick Bezhanishvili

    2016-09-01

    Full Text Available Topological fixpoint logics are a family of logics that admits topological models and where the fixpoint operators are defined with respect to the topological interpretations. Here we consider a topological fixpoint logic for relational structures based on Stone spaces, where the fixpoint operators are interpreted via clopen sets. We develop a game-theoretic semantics for this logic. First we introduce games characterising clopen fixpoints of monotone operators on Stone spaces. These fixpoint games allow us to characterise the semantics for our topological fixpoint logic using a two-player graph game. Adequacy of this game is the main result of our paper. Finally, we define bisimulations for the topological structures under consideration and use our game semantics to prove that the truth of a formula of our topological fixpoint logic is bisimulation-invariant.

  15. Floquet topological insulators for sound

    Science.gov (United States)

    Fleury, Romain; Khanikaev, Alexander B.; Alù, Andrea

    2016-06-01

    The unique conduction properties of condensed matter systems with topological order have recently inspired a quest for the similar effects in classical wave phenomena. Acoustic topological insulators, in particular, hold the promise to revolutionize our ability to control sound, allowing for large isolation in the bulk and broadband one-way transport along their edges, with topological immunity against structural defects and disorder. So far, these fascinating properties have been obtained relying on moving media, which may introduce noise and absorption losses, hindering the practical potential of topological acoustics. Here we overcome these limitations by modulating in time the acoustic properties of a lattice of resonators, introducing the concept of acoustic Floquet topological insulators. We show that acoustic waves provide a fertile ground to apply the anomalous physics of Floquet topological insulators, and demonstrate their relevance for a wide range of acoustic applications, including broadband acoustic isolation and topologically protected, nonreciprocal acoustic emitters.

  16. Computational differential topology

    Directory of Open Access Journals (Sweden)

    Denis Blackmore

    2007-04-01

    Full Text Available Some of the more differential aspects of the nascent field of computational topology are introduced and treated in considerable depth. Relevant categories based upon stratified geometric objects are proposed, and fundamental problems are identified and discussed in the context of both differential topology and computer science. New results on the triangulation of objects in the computational differential categories are proven, and evaluated from the perspective of effective computability (algorithmic solvability. In addition, the elements of innovative, effectively computable approaches for analyzing and obtaining computer generated representations of geometric objects based upon singularity/stratification theory and obstruction theory are formulated. New methods for characterizing complicated intersection sets are proven using differential analysis and homology theory. Also included are brief descriptions of several implementation aspects of some of the approaches described, as well as applications of the results in such areas as virtual sculpting, virtual surgery, modeling of heterogeneous biomaterials, and high speed visualizations.

  17. Design as Topology

    DEFF Research Database (Denmark)

    Ekman, Ulrik

    2015-01-01

    This article discusses the issue of approaching the design of the ubiquitous city as a matter of topology. The general context here is the design of contemporary global urbanity in the form of u-cities, smart cities, or intelligent cities emerging with the second phase of network societies...... that increasingly develop mixed reality environments with context-aware out-of-the-box computing as well as the soci-ocultural and experiental horizon of a virtually and physically mobile citizenry. Design here must meet an ongoing and exceedingly complex interactivity among environmental, technical, social...... and personal multiplicities of urban nodes on the move. This chapter focuses on the design of a busy traffic intersection in the South Korean u-city Songdo. Hence, the discussion whether and how Songdo may be approached via design as topology primarily considers the situation, event, and experience in which...

  18. Network topology mapper

    Science.gov (United States)

    Quist, Daniel A [Los Alamos, NM; Gavrilov, Eugene M [Los Alamos, NM; Fisk, Michael E [Jemez, NM

    2008-01-15

    A method enables the topology of an acyclic fully propagated network to be discovered. A list of switches that comprise the network is formed and the MAC address cache for each one of the switches is determined. For each pair of switches, from the MAC address caches the remaining switches that see the pair of switches are located. For each pair of switches the remaining switches are determined that see one of the pair of switches on a first port and the second one of the pair of switches on a second port. A list of insiders is formed for every pair of switches. It is determined whether the insider for each pair of switches is a graph edge and adjacent ones of the graph edges are determined. A symmetric adjacency matrix is formed from the graph edges to represent the topology of the data link network.

  19. Topology in Molecular Biology

    CERN Document Server

    Monastyrsky, Michail Ilych

    2007-01-01

    The book presents a class of new results in molecular biology for which topological methods and ideas are important. These include: the large-scale conformation properties of DNA; computational methods (Monte Carlo) allowing the simulation of large-scale properties of DNA; the tangle model of DNA recombination and other applications of Knot theory; dynamics of supercoiled DNA and biocatalitic properties of DNA; the structure of proteins; and other very recent problems in molecular biology. The text also provides a short course of modern topology intended for the broad audience of biologists and physicists. The authors are renowned specialists in their fields and some of the new results presented here are documented for the first time in monographic form.

  20. Topological signal processing

    CERN Document Server

    Robinson, Michael

    2014-01-01

    Signal processing is the discipline of extracting information from collections of measurements. To be effective, the measurements must be organized and then filtered, detected, or transformed to expose the desired information.  Distortions caused by uncertainty, noise, and clutter degrade the performance of practical signal processing systems. In aggressively uncertain situations, the full truth about an underlying signal cannot be known.  This book develops the theory and practice of signal processing systems for these situations that extract useful, qualitative information using the mathematics of topology -- the study of spaces under continuous transformations.  Since the collection of continuous transformations is large and varied, tools which are topologically-motivated are automatically insensitive to substantial distortion. The target audience comprises practitioners as well as researchers, but the book may also be beneficial for graduate students.