Performance of a commercial assay for the diagnosis of influenza A (H1N1 infection in comparison to the Centers for Disease Control and Prevention protocol of real time RT-PCR

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María G Barbás

2012-03-01

Full Text Available At the time of influenza A (H1N1 emergency, the WHO responded with remarkable speed by releasing guidelines and a protocol for a real-time RT-PCR assay (rRT-PCR. The aim of the present study was to evalúate the performance of the "Real Time Ready Influenza A/H1N1 Detection Set" (June 2009-Roche kit in comparison to the CDC reference rRT-PCR protocol. The overall sensitivity of the Roche assay for detection of the Inf A gene in the presence or absence of the H1 gene was 74.5 %. The sensitivity for detecting samples that were only positive for the Inf A gene (absence of the H1 gene was 53.3 % whereas the sensitivity for H1N1-positive samples (presence of the Inf A gene and any other swine gene was 76.4 %. The specificity of the assay was 97.1 %. A new version of the kit (November 2009 is now available, and a recent evaluation of its performance showed good sensitivity to detect pandemic H1N1 compared to other molecular assays.Durante la pandemia de influenza A (H1N1, la OMS recomendó algoritmos y protocolos de detección del virus mediante RT-PCR en tiempo real. El objetivo del presente estudio fue evaluar el desempeño del equipo que comercializa la empresa Roche, Real Time Ready Influenza A/H1N1 Detection Set (junio de 2009, en comparación con el protocolo de RT-PCR en tiempo real de los CDC. La sensibilidad global del ensayo de Roche para la detección del gen Inf A en presencia o ausencia del gen H1 fue 74,5 %. La sensibilidad para la detección de muestras positivas solo para el gen Inf A (ausencia del gen H1 fue 53,3 % y la sensibilidad para la detección de muestras positivas para H1N1 (presencia del gen Inf A y cualquier otro gen porcino fue 76,4 %. La especificidad fue 97,1 %. Existe una nueva versión del equipo (noviembre 2009 que, según se ha descrito, presenta buena sensibilidad en comparación con otros ensayos moleculares para detectar H1N1 pandémica.

Detection of Tomato black ring virus by real-time one-step RT-PCR.

Science.gov (United States)

Harper, Scott J; Delmiglio, Catia; Ward, Lisa I; Clover, Gerard R G

2011-01-01

A TaqMan-based real-time one-step RT-PCR assay was developed for the rapid detection of Tomato black ring virus (TBRV), a significant plant pathogen which infects a wide range of economically important crops. Primers and a probe were designed against existing genomic sequences to amplify a 72 bp fragment from RNA-2. The assay amplified all isolates of TBRV tested, but no amplification was observed from the RNA of other nepovirus species or healthy host plants. The detection limit of the assay was estimated to be around nine copies of the TBRV target region in total RNA. A comparison with conventional RT-PCR and ELISA, indicated that ELISA, the current standard test method, lacked specificity and reacted to all nepovirus species tested, while conventional RT-PCR was approximately ten-fold less sensitive than the real-time RT-PCR assay. Finally, the real-time RT-PCR assay was tested using five different RT-PCR reagent kits and was found to be robust and reliable, with no significant differences in sensitivity being found. The development of this rapid assay should aid in quarantine and post-border surveys for regulatory agencies. Copyright © 2010 Elsevier B.V. All rights reserved.

Real-Time RT-PCR for the Detection of Lyssavirus Species

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A. Deubelbeiss

2014-01-01

Full Text Available The causative agents of rabies are single-stranded, negative-sense RNA viruses in the genus Lyssavirus of Rhabdoviridae, consisting of twelve classified and three as yet unclassified species including classical rabies virus (RABV. Highly neurotropic RABV causes rapidly progressive encephalomyelitis with nearly invariable fatal outcome. Rapid and reliable diagnosis of rabies is highly relevant for public and veterinary health. Due to growing variety of the genus Lyssavirus observed, the development of suitable molecular assays for diagnosis and differentiation is challenging. This work focused on the establishment of a suitable real-time RT-PCR technique for rabies diagnosis as a complement to fluorescent antibody test and rabies tissue culture infection test as gold standard for diagnosis and confirmation. The real-time RT-PCR was adapted with the goal to detect the whole spectrum of lyssavirus species, for nine of which synthesized DNA fragments were used. For the detection of species, seven probes were developed. Serial dilutions of the rabies virus strain CVS-11 showed a 100-fold higher sensitivity of real-time PCR compared to heminested RT-PCR. Using a panel of thirty-one lyssaviruses representing four species, the suitability of the protocol could be shown. Phylogenetic analysis of the sequences obtained by heminested PCR allowed correct classification of all viruses used.

Gestión del tiempo ocioso dinámico para ajustar el consumo de energía en tareas de tiempo real integrando control multifrecuencia

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Alfonso Salvador Alfonsi Sebastiani

2014-11-01

Full Text Available Este trabajo tiene como objetivo ajustar la energía consumida por tareas de tiempo real críticas, producto de la variabilidad de sus tiempos de cómputo usando la integración del control multifrecuencia y la planificación realimentada. Se adaptaron e integraron técnicas dinámicas que manejan el tiempo ocioso debido al tiempo de ejecución en el peor caso, al factor de carga del procesador y el aprovechamiento del tiempo ocioso por estiramiento a la(s próxima(s activación(es, en una Técnica Dinámica Multifrecuencia para el Manejo del Tiempo Ocioso, alojada en un planificador realimentado para el ahorro de energía, dirigido a procesadores que varían el voltaje de alimentación y frecuencia de operación. Además se tomó ventaja de las técnicas de control multifrecuencia dado que la gestión de recursos es formulada como un problema de control de sistemas de cómputo que especifica a cada tarea por un lazo de control que trabaja a su propio periodo de activación, diferentes a los requeridos en la referencia y respuesta del sistema (factor de carga total del procesador.Los resultados arrojan que el tiempo ocioso debido a variabilidad de los tiempos de cómputo se distribuye de forma natural por los lazos de control multifrecuencia, global y localmente, pudiendo llegar a un ahorro de energía del 61,04%, dando un valor agregado Intra e InterTarea. Además, sugiere un buen desempeño al contrastarlo con otras estrategias.

Comparative Evaluation Of Conventional Rt-pcr And Real-time Rt-pcr (rrt-pcr) For Detection Of Avian Metapneumovirus Subtype A [comparação Entre As Técnicas De Rt-pcr Convencional E Rt-pcr Em Tempo Real Para A Detecção Do Metapneumovírus Aviários Subtipo A

OpenAIRE

Ferreira H.L.; Spilki F.R.; dos Santos M.M.A.B.; de Almeida R.S.; Arns C.W.

2009-01-01

Avian metapneumovirus (AMPV) belongs to Metapneumovirus genus of Paramyxoviridae family. Virus isolation, serology, and detection of genomic RNA are used as diagnostic methods for AMPV. The aim of the present study was to compare the detection of six subgroup A AMPV isolates (AMPV/A) viral RNA by using different conventional and real time RT-PCR methods. Two new RT-PCR tests and two real time RT-PCR tests, both detecting fusion (F) gene and nucleocapsid (N) gene were compared with an establis...

La diástasis del tiempo real, entre el mito, la praxis y el éskhaton

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Cencillo, Luis

2004-06-01

Full Text Available Unlike physical time, which is what docks measure, living time is multidimensional because it concerns the very being of the living. For the living human being, time is existing; his experiencing time is his experiencing the active rhythm of his existing. This experiencing varies as it is either individual or collective, subjectal or socially committed in a praxis that produces «a world.» There are several modes, levels or rhythms of time (e. g., existential, junctural, terminal, as there are several —personally lived— experiences in time, such as that of anticipation, rush, changing (developmentally or abruptly or aging. Mythical time is not an historical time, yet it is not unreal: explains the origins of a people and their institutions or a regular phenomenon. Lived real time is the active dynamics of joining a past that remains as the effect of «past» (but operative causes, unfolding toward a future that begins to appear before our eyes —sometimes against our will—, with a present that is tension and sudden movement for a project that is still unreal. Existing is an organic and structured totality (Gestalt, which will terminate because of its very nature as an articulated process.

A diferencia del tiempo físico, que es el que miden los relojes, el tiempo vital es múltiple, porque se trata del ser mismo del viviente. En el ser humano es el existir y su vivencia de tiempo es la vivencia de su ritmo vivo existiendo. Esta vivencia se diversifica en cuanto individual o en cuanto colectiva, en cuanto subjetal y en cuanto socialmente comprometida en una praxis productora de "mundo". Se pueden distinguir varias modalidades, niveles y ritmos de tiempo (v. g., un tiempo existencial, un tiempo coyuntural, un tiempo terminal, así como diversas experiencias personalmente vividas en el tiempo, como de anticipación, o de prisa, o de estar cambiando (evolutiva o abruptamente, o de envejecimiento. El tiempo mítico es un tiempo

Real-time RT-PCR, a necessary tool to support the diagnosis and surveillance of rotavirus in Mexico.

Science.gov (United States)

De La Cruz Hernández, Sergio Isaac; Anaya Molina, Yazmin; Gómez Santiago, Fabián; Terán Vega, Heidi Lizbeth; Monroy Leyva, Elda; Méndez Pérez, Héctor; García Lozano, Herlinda

2018-04-01

Rotavirus produces diarrhea in children under 5 years old. Most of those conventional methods such as polyacrylamide gel electrophoresis (PAGE) and reverse transcription-polymerase chain reaction (RT-PCR) have been used for rotavirus detection. However, these techniques need a multi-step process to get the results. In comparison with conventional methods, the real-time RT-PCR is a highly sensitive method, which allows getting the results in only one day. In this study a real-time RT-PCR assay was tested using a panel of 440 samples from patients with acute gastroenteritis, and characterized by PAGE and RT-PCR. The results show that the real-time RT-PCR detected rotavirus from 73% of rotavirus-negative samples analyzed by PAGE and RT-PCR; thus, the percentage of rotavirus-positive samples increased to 81%. The results indicate that this real-time RT-PCR should be part of a routine analysis, and as a support of the diagnosis of rotavirus in Mexico. Copyright © 2017 Elsevier Inc. All rights reserved.

Aplicación de RT-Linux en el control de motores de pasos. Parte I; Application of RT-Linux in the Control of Steps Mators. Part I

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Ernesto Duany Renté

2011-02-01

Full Text Available La idea fundamental de este artículo es mostrar cómo controlar un motor de paso empleando el puertoparalelo de una computadora, y demostrar la eficiencia temporal de las aplicaciones que se desarrollan ensistemas preparados para ejecutar tareas de precisión; aprovechar al máximo la capacidad de tiempo realestricto que brinda RT-Linux para el control de accionamientos eléctricos. Se desarrolla un pequeño softwareen lenguaje C que envía las señales al puerto paralelo en el tiempo necesario. Este software no estádiseñado con fines comerciales, solo permite realizar pruebas sobre el circuito de control diseñado paraeste propósito.  The fundamental idea of this article is to control a steps motor using the parallel port of a computer anddemonstrate the temporary efficiency of the applications that are executed in prepared systems to executetasks of real time. To take advantage of to the maximum capacity of strict real time that RT-Linux offers usfor the control of electric workings. A small software is developed in language C that sent the signs to theparallel port in the necessary time. This software is not designed with commercial, only allows to carry outtests on the control circuit designed for this purpose.

MINIX4RT: a real-time operating system based on MINIX

OpenAIRE

Pessolani, Pablo Andrés

2006-01-01

Tanenbaum's MINIX Operating System was extended with a Real-Time microkernel and services to conform MINIX4RT, a Real-Time Operating System for academic uses that includes more flexible Interprocess Communications facilities supporting basic priority inheritance protocol, a fixed priority scheduler, timer and event driven interrupt management, statistics and Real-Time metrics gathering keeping backward compatibility with standard MINIX versions. Facultad de Informática

Desarrollo de un sistema de reconocimiento de emociones faciales en tiempo real

OpenAIRE

Ribes Gil, Héctor

2017-01-01

Una organización del trastorno nutricional ha puesto en práctica un nuevo tratamiento para sus pacientes. Éste está directamente relacionado con la emoción del paciente, cuya emoción se clasifica oralmente. Llegados a ese punto aparece el reto de automatizar esta tarea, desarrollando un sistema de reconocimiento de emociones faciales en tiempo real caracterizado por un detector de rostros, un detector de Key Points y una red neuronal convolucional utilizando "DeepLearning" para extraer las ca...

Improvement of a real-time RT-PCR assay for the detection of enterovirus RNA

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Bruynseels Peggy

2009-07-01

Full Text Available Abstract We describe an improvement of an earlier reported real-time RT-PCR assay for the detection of enterovirus RNA, based on the 5' exonuclease digestion of a dual-labeled fluorogenic probe by Taq DNA polymerase. A different extraction method, real-time RT-PCR instrument and primer set were evaluated. Our data show that the optimized assay yields a higher sensitivity and reproducibility and resulted in a significant reduced hands-on time per sample.

Review: Algoritmos de planificación para la transmisión de datos en tiempo real con IEEE 802.15.4

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Sixto Enrique Campaña Bastidas

2015-10-01

Full Text Available Las redes de sensores inalámbricas (WSN se están extendiendo a muchos campos de aplicación, tales como ciudades inteligentes, ambientes inteligentes, internet de las cosas, entre otras tecnologías. Para muchasde estas tendencias es esencial establecer métodos para la entrega de paquetes, sobre todo aquellos que presenten garantías de tiempo real. En este trabajo se presenta un estudio de los avances recientes publicadosen la literatura científica, considerando principalmente las técnicas de acceso al medio y la planificación de transmisión de datos con garantías de tiempo real en WSN basadas en el estándar IEEE 802.15.4. Este estudiopresenta las características más importantes, así como las principales diferencias entre las distintas técnicas. Al final se presentan algunas conclusiones y se proponen futuras líneas de investigación que buscan con interés la aplicación de WSN en ambientes con restricciones de tiempo real.

Mejora de los Test de Planificabilidad para Asignación Incremental de Tareas en Sistemas Multiprocesadores de Tiempo Real

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Sergio Sáez

2013-04-01

Full Text Available Resumen: Durante la etapa de diseño de un sistema multiprocesador de tiempo real, los test de planificabilidad son una parte clave de los algoritmos de asignación de tareas. El uso de test de planificabilidad exactos permite aumentar la eficiencia de los algoritmos de asignación a costa de un incremento en el tiempo de computo necesario para validar una partición. Aunque existen varios estudios que mejoran el rendimiento de dichos test de planificabilidad, ninguno se ha centrado en el contexto en que dichos test se utilizan. Este trabajo presenta diversas mejoras en los test de planificabilidad exactos basándose en la naturaleza incremental del proceso de asignación. Abstract: During the design of a Real-Time Multiprocessor System, schedulability tests are a key component of the task allocation algorithms. Using exact schedulability tests increases the efficiency of these allocation algorithms, but the execution cost to validate a task partition is also greatly increased. Although several improvement to these schedulability test have been recently published, their use in the multiprocessor context is still unaddressed. This work presents several improvements to execution costs of the schedulability test when they are used by task allocation algorithms taking advantage of the incremental nature of this allocation process. Palabras clave: Sistema Multiprocesadores, Análisis de Planificabilidad, Sistema de Tiempo Real, Keywords: Multiprocessor Systems, Schedulability Analysis, Real-Time Systems

Simulación de Tareas Aperiódicas y Esporádicas de Tiempo Real mediante un Modelo de Eventos Discretos

OpenAIRE

Paez, Francisco Ezequiel; Urriza, José M.; Orozco, Javier Dario

2015-01-01

Este trabajo presenta una extensión a un modelo de eventos discretos para el diseño de simuladores de Sistemas de Tiempo Real con tareas periódicas, incorporando tareas de tipo esporádico y aperiódico. Además, se estudia el soporte para jitter y offset. El modelo es diseñado empleando la técnica de grafo de eventos, y se ajusta a los sistemas dinámicos discretos como lo son los Sistemas de Tiempo Real. En la actualidad, el uso de simuladores para realizar comprobaciones de algoritmos, modelos...

Simulación en tiempo real de un MPC utilizando herramientas de software libre

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Rafael F. Tanda Martínez

2011-05-01

Full Text Available Normal 0 21 false false false MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Tabla normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Times New Roman"; mso-ansi-language:#0400; mso-fareast-language:#0400; mso-bidi-language:#0400;} En este trabajo se implementa un controlador predictivo basado en modelos ARX en forma de bloque para el CACSD Scicos. El controlador es simulado sobre una plataforma RCP basada en herramientas de código abierto y libre distribución, como Scicoslab/Scicos, RTAI-LAB y el sistema operativo de tiempo real Linux/RTAI. Para la validación de esta estrategia de control se utiliza un proceso de segundo orden con un retardo considerablemente grande. La visualización y recolección de los datos, así como el ajuste de los parámetros de la tarea de tiempo real en ejecución se hacen mediante un osciloscopio virtual llamado Qrtailab.

Real-Time-Simulation of IEEE-5-Bus Network on OPAL-RT-OP4510 Simulator

Science.gov (United States)

Atul Bhandakkar, Anjali; Mathew, Lini, Dr.

2018-03-01

The Real-Time Simulator tools have high computing technologies, improved performance. They are widely used for design and improvement of electrical systems. The advancement of the software tools like MATLAB/SIMULINK with its Real-Time Workshop (RTW) and Real-Time Windows Target (RTWT), real-time simulators are used extensively in many engineering fields, such as industry, education, and research institutions. OPAL-RT-OP4510 is a Real-Time Simulator which is used in both industry and academia. In this paper, the real-time simulation of IEEE-5-Bus network is carried out by means of OPAL-RT-OP4510 with CRO and other hardware. The performance of the network is observed with the introduction of fault at various locations. The waveforms of voltage, current, active and reactive power are observed in the MATLAB simulation environment and on the CRO. Also, Load Flow Analysis (LFA) of IEEE-5-Bus network is computed using MATLAB/Simulink power-gui load flow tool.

The development and application of the two real-time RT-PCR assays to detect the pathogen of HFMD.

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Aili Cui

Full Text Available Large-scale Hand, Foot, and Mouth Disease (HFMD outbreaks have frequently occurred in China since 2008, affecting more than one million children and causing several hundred children deaths every year. The pathogens of HFMD are mainly human enteroviruses (HEVs. Among them, human enterovirus 71 (HEV71 and coxsackievirus A16 (CVA16 are the most common pathogens of HFMD. However, other HEVs could also cause HFMD. To rapidly detect HEV71 and CVA16, and ensure detection of all HEVs causing HFMD, two real-time hybridization probe-based RT-PCR assays were developed in this study. One is a multiplex real-time RT-PCR assay, which was developed to detect and differentiate HEV71 specifically from CVA16 directly from clinical specimens within 1-2 h, and the other is a broad-spectrum real-time RT-PCR assay, which targeted almost all HEVs. The experiments confirmed that the two assays have high sensitivity and specificity, and the sensitivity was up to 0.1 TCID50/ml for detection of HEVs, HEV71, and CVA16, respectively. A total of 213 clinical specimens were simultaneously detected by three kinds of assays, including the two real-time RT-PCR assays, direct conventional RT-PCR assay, and virus isolation assay on human rhabdomyosarcoma cells (RD cells. The total positive rate of both HEV71 and CVA16 was 69.48% with real-time RT-PCR assay, 47.42% with RT-PCR assay, and 34.58% with virus isolation assay. One HFMD clinical specimen was positive for HEV, but negative for HEV71 or CVA16, which was identified as Echovirus 11 (Echo11 by virus isolation, RT-PCR, and sequencing for the VP1 gene. The two real-time RT-PCR assays had been applied in 31 provincial HFMD labs to detect the pathogens of HFMD, which has contributed to the rapid identification of the pathogens in the early stages of HFMD outbreaks, and helped to clarify the etiologic agents of HFMD in China.

Femtoquímica: reacciones en tiempo real, ?`Posibles aplicaciones en Astrofísica?

Science.gov (United States)

Douhal, Abderrazzak

En esta conferencia, se mostrarán resultados de medidas en escala del femtosegundo por la primera vez obtenidos en España. Los sistemas elegidos muestran dinámicas que varían de 50 fs a centenas de picosegundo. La técnica usada (sumación de frecuencia) permite ver como ocurren las reacciones químicas y biológicas en tiempo real de reacciones. Su aplicación al estudio de las reacciones fotónicas en el espacio es evidente.

Searching for the best real-time RT-PCRs to detect Zika virus infections: the importance of comparing several protocols

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F.M. de Moraes

2018-05-01

Full Text Available Clinical manifestations of Zika, dengue, and chikungunya virus infections are very similar, making it difficult to reach a diagnosis based only on clinical grounds. In addition, there is an intense cross-reactivity between antibodies directed to Zika virus and other flaviviruses, and an accurate Zika diagnosis is best achieved by real-time RT-PCR. However, some real-time RT-PCR show better performance than others. To reach the best possible Zika diagnosis, the analytic sensitivity of some probe-based real-time RT-PCR amplifying Zika virus RNA was evaluated in spiked and clinical samples. We evaluated primers and probes to detect Zika virus, which had been published before, and tested sensitivity using serum spiked and patient samples by real-time RT-PCR. When tested against spiked samples, the previously described primers showed different sensitivity, with very similar results when samples from patients (serum and urine were analyzed. Real-time RT-PCR designed to amplify Zika virus NS1 showed the best analytical sensitivity for all samples.

Adquisición, registro y transmisión en tiempo real de señales sismológicas bajo TCP/IP

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Vargas-jiménez Carlos A.

2001-08-01

Full Text Available

The constant evolution of network technologies has made possible the development of applications facilitating the real time access to the information. This way, it is possible the implementation of remote monitoring systems that using PCs achieves efficient transmission of signals through computer networks. In this work, the procedures system design and implementation procedures are explain in Client/Server environment that, based on TCP/lP, transmits in real time 16 seismological signals over LAN network and the Internet. The server is a PC endowed with an acquisition data card and it is the one in charge of carrying out the signal Analog/Digital conversion, to store in files those that correspond to seismic events and, at the same time, to assist the applications of the different clients. The client's software allows the users to view in real time the signals that the server is acquiring and to carry out a basicn processing to the signals that have been registered in the server.

Se presenta el desarrollo de un sistema de monitoreo de variables sísmicas, que incluye la adquisición y adecuación de 16 canales simultáneos, el preproceso, la grabación y la transmisión sobre redes IP en tiempo real. EI sistema esta orientado al sistema Windows, para lo cual se emplearon librerías dinámicas orientadas al acceso de dispositivos en tiempo real. Así mismo, el acceso de datos al PC se realiza vfa DMA, para implementar el proceso múltiple de señales en tiempo real. La arquitectura de la red IP de monitoreo sísmico es cliente/servidor, en la cual se tome como servidor un PC dotado de una tarjeta de adquisición de datos, encargado de realizar la conversión an

Plataforma de desarrollo para el control en tiempo real de estructuras cinemáticas con realimentación visual//Platform to develop real time visual servoing control in kinematics systems

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René González-Rodríguez

2012-09-01

Full Text Available En este trabajo se presenta una plataforma de desarrollo para el control en tiempo real de estructuras cinemáticas con realimentación visual. Se ha diseñado una configuración genérica que permite la implementación de cualquier variante de control visual. Para el procesamiento de la imagen se ha propuesto una estrategia que permite el uso de diferentes herramientas comerciales o algoritmos propiospara la captura y extracción de características de la imagen. El uso de Real Time Work Shop y Real Time Windows Target en el lazo de control interno brinda la posibilidad de implementar algoritmos de control servovisual en tiempo real. Al final del trabajo se presentan los resultados de un esquema de controlservovisual aplicado en un manipulador industrial. La plataforma propuesta constituye una herramienta de desarrollo para aplicaciones industriales de control servovisual y sirve de apoyo a la enseñanza de la mecatrónica en pregrado y postgrado.Palabras claves: control servovisual, control en tiempo real, estructuras cinemáticas._______________________________________________________________________________AbstractIn this work we propose a platform to develop visual servoing control systems. The platform has a generic design with the possibility to implement direct or look and move visual servoing systems. For the image processing we present a generic design allowing the use of any image processing library like Matrox MIL,Intel IPP, OpenCV or any algorithms for image capture and target characteristics extraction. The uses of Real Time Work Shop and Real Time Windows Target in the internal loop permits modify the control structure in SIMULINK very easy.Key words: visual servoing, real time control, kinematics systems.

A novel method of multiple nucleic acid detection: Real-time RT-PCR coupled with probe-melting curve analysis.

Science.gov (United States)

Han, Yang; Hou, Shao-Yang; Ji, Shang-Zhi; Cheng, Juan; Zhang, Meng-Yue; He, Li-Juan; Ye, Xiang-Zhong; Li, Yi-Min; Zhang, Yi-Xuan

2017-11-15

A novel method, real-time reverse transcription PCR (real-time RT-PCR) coupled with probe-melting curve analysis, has been established to detect two kinds of samples within one fluorescence channel. Besides a conventional TaqMan probe, this method employs another specially designed melting-probe with a 5' terminus modification which meets the same label with the same fluorescent group. By using an asymmetric PCR method, the melting-probe is able to detect an extra sample in the melting stage effectively while it almost has little influence on the amplification detection. Thus, this method allows the availability of united employment of both amplification stage and melting stage for detecting samples in one reaction. The further demonstration by simultaneous detection of human immunodeficiency virus (HIV) and hepatitis C virus (HCV) in one channel as a model system is presented in this essay. The sensitivity of detection by real-time RT-PCR coupled with probe-melting analysis was proved to be equal to that detected by conventional real-time RT-PCR. Because real-time RT-PCR coupled with probe-melting analysis can double the detection throughputs within one fluorescence channel, it is expected to be a good solution for the problem of low-throughput in current real-time PCR. Copyright © 2017 Elsevier Inc. All rights reserved.

Comparative evaluation of conventional RT-PCR and real-time RT-PCR (RRT-PCR for detection of avian metapneumovirus subtype A Comparação entre as técnicas de RT-PCR convencional e RT-PCR em tempo real para a detecção do metapneumovírus aviários subtipo A

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Helena Lage Ferreira

2009-08-01

Full Text Available Avian metapneumovirus (AMPV belongs to Metapneumovirus genus of Paramyxoviridae family. Virus isolation, serology, and detection of genomic RNA are used as diagnostic methods for AMPV. The aim of the present study was to compare the detection of six subgroup A AMPV isolates (AMPV/A viral RNA by using different conventional and real time RT-PCR methods. Two new RT-PCR tests and two real time RT-PCR tests, both detecting fusion (F gene and nucleocapsid (N gene were compared with an established test for the attachment (G gene. All the RT-PCR tested assays were able to detect the AMPV/A. The lower detection limits were observed using the N-, F- based RRT-PCR and F-based conventional RT-PCR (10(0.3 to 10¹ TCID50 mL-1. The present study suggests that the conventional F-based RT-PCR presented similar detection limit when compared to N- and F-based RRT-PCR and they can be successfully used for AMPV/A detection.O metapneumovírus aviário (AMPV pertence ao gênero Metapneumovirus, família Paramyxoviridae. Isolamento viral, sorologia e detecção do RNA genômico são atualmente as técnicas utilizadas para o diagnóstico desse agente. O objetivo do presente estudo foi comparar a detecção de RNA viral de seis isolados de AMPV, subtipo A (AMPV/A, utilizando diferentes métodos de RT-PCR convencional e real time RT-PCR (RRT-PCR. Duas novas técnicas de RT-PCR convencional e duas técnicas de RRT-PCR, ambas para a detecção dos genes da nucleoproteína (N e da proteína de fusão (F, foram comparadas com um RT-PCR previamente estabelecido para a detecção do AMPV (gene da glicoproteína -G. Todos esses métodos foram capazes de detectar os isolados AMPV/A. As técnicas RRT-PCR (genes F e N mostraram os menores limites de detecção (10(0.3 to 10¹ TCID50 mL-1. Os resultados sugerem que as técnicas RT-PCR convencional (gene F e as técnicas de RRT-PCR (gene F e N desenvolvidas no presente estudo podem ser utilizadas com sucesso para a detecção do

Algoritmo genético permutacional para el despliegue y la planificación de sistemas de tiempo real distribuidos

OpenAIRE

Azketa, Ekain; Gutiérrez, J. Javier; Di Natale, Marco; Almeida, Luís; Marcos, Marga

2013-01-01

Resumen: El despliegue y la planificación de tareas y mensajes en sistemas de tiempo real distribuidos son problemas NP-difíciles (NP- hard), por lo que no existen métodos óptimos para solucionarlos en tiempo polinómico. En consecuencia, estos problemas son adecuados para abordarse mediante algoritmos genéricos de búsqueda y optimización. En este artículo se propone un algoritmo genético multiobjetivo basado en una codificación permutacional de las soluciones para abordar el despli...

Un algoritmo de replanificación en tiempo real basado en un índice de estabilidad de Lyapunov para líneas de metro

Directory of Open Access Journals (Sweden)

A. Berbey

2014-04-01

Full Text Available Resumen: En este trabajo, se propone un nuevo índice basado en el método directo de Lyapunov para el diseño de un algoritmo de reprogramación en tiempo real para líneas de metro. En este estudio se utiliza una versión modificada de un modelo de espacio de estados en tiempo real discreto, que considera los efectos de saturación en la línea de metro. Una vez que el modelo de espacio de estados se ha obtenido, el método directo de Lyapunov se aplica con el fin de analizar la estabilidad del sistema de la línea de metro. Como resultado de este análisis no sólo se propone un nuevo índice de estabilidad, sino también la creación de tres zonas de estabilidad para indicar el estado actual del sistema. Finalmente, se presenta un nuevo algoritmo que permite la reprogramación del calendario de los trenes en tiempo real en presencia de perturbaciones medianas. Abstract: A new Lyapunov-based index for designing a rescheduling algorithm in real time for metro lines has been proposed in this paper. A modified real time discrete space state model which considers saturation effects in the metro line has been utilized in this study. Once the space state model has been obtained, the direct method of Lyapunov is applied in order to analyze the stability of the metro line system. As a result of this analysis not only a new stability index is proposed, but also the establishment of three stability zones to indicate the current state of the system. Finally, a new algorithm which allows the rescheduling of the timetable in the real time of the trains under presence of medium disturbances has been presented. Palabras clave: Sistema de metro, estabilidad de Lyapunov, planificación en tiempo real, Keywords: Metro system, Lyapunov stability, real time planning, traffic regulation

Real-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated associated virus 3 variant groups I, II, III and VI

Directory of Open Access Journals (Sweden)

Bester Rachelle

2012-09-01

Full Text Available Abstract Background Grapevine leafroll-associated virus 3 (GLRaV-3 is the main contributing agent of leafroll disease worldwide. Four of the six GLRaV-3 variant groups known have been found in South Africa, but their individual contribution to leafroll disease is unknown. In order to study the pathogenesis of leafroll disease, a sensitive and accurate diagnostic assay is required that can detect different variant groups of GLRaV-3. Methods In this study, a one-step real-time RT-PCR, followed by high-resolution melting (HRM curve analysis for the simultaneous detection and identification of GLRaV-3 variants of groups I, II, III and VI, was developed. A melting point confidence interval for each variant group was calculated to include at least 90% of all melting points observed. A multiplex RT-PCR protocol was developed to these four variant groups in order to assess the efficacy of the real-time RT-PCR HRM assay. Results A universal primer set for GLRaV-3 targeting the heat shock protein 70 homologue (Hsp70h gene of GLRaV-3 was designed that is able to detect GLRaV-3 variant groups I, II, III and VI and differentiate between them with high-resolution melting curve analysis. The real-time RT-PCR HRM and the multiplex RT-PCR were optimized using 121 GLRaV-3 positive samples. Due to a considerable variation in melting profile observed within each GLRaV-3 group, a confidence interval of above 90% was calculated for each variant group, based on the range and distribution of melting points. The intervals of groups I and II could not be distinguished and a 95% joint confidence interval was calculated for simultaneous detection of group I and II variants. An additional primer pair targeting GLRaV-3 ORF1a was developed that can be used in a subsequent real-time RT-PCR HRM to differentiate between variants of groups I and II. Additionally, the multiplex RT-PCR successfully validated 94.64% of the infections detected with the real-time RT-PCR HRM

Development of a Web application for a real time information system; Desarrollo de una aplicacion web para un sistema de informacion en tiempo real

Energy Technology Data Exchange (ETDEWEB)

Espinosa R, Alfredo; Silva F, Brisa M; Quintero R, Agustin [Instituto de Investigaciones Electricas, Cuernavaca, Morelos (Mexico)

2007-07-01

In this article its is described a technique for the development of a Web application for a real time information system that allows the remote and concurrent connection of different equipment to the network historical data base of the system, without the need of the installation of any software component in the remote equipment of the user who makes the consultation. It defines and establishes the software architecture that allows the development of the Web application, the analysis stages, the operation of the technology to be used, as well as the design, development and implementation of the application. Finally, the accomplishments obtained with the development of the Web application for a real time information system are described. [Spanish] En este articulo se describe una tecnica para el desarrollo de una aplicacion web para un sistema de informacion en tiempo real, que permita la conexion remota y concurrente de diferentes equipos en la red a la base de datos historica del sistema, sin necesidad de que se instale ningun componente de software en el equipo remoto del usuario que realiza la consulta. Se define y establece la arquitectura de software que permite el desarrollo de la aplicacion web, las etapas de analisis, el funcionamiento de la tecnologia a utilizar, asi como el diseno, desarrollo e implementacion de la aplicacion. Finalmente, se describen los logros obtenidos con el desarrollo de la aplicacion web para un sistema de informacion en tiempo real.

AmbientRT - real time system software support for data centric sensor networks

NARCIS (Netherlands)

Hofmeijer, T.J.; Dulman, S.O.; Jansen, P.G.; Havinga, Paul J.M.

We present the architecture and design of a real time operating system for mobile wireless sensor networks. AmbientRT is being developed for environments with very limited resources in order to relieve the burden of the developer and to efficiently use the resources of the node. This paper presents

AmbientRT - real time system software support for data centric sensor networks

NARCIS (Netherlands)

Hofmeijer, T.J.; Dulman, S.O.; Jansen, P.G.; Havinga, Paul J.M.

2004-01-01

We present the architecture and design of a real time operating system for mobile wireless sensor networks. AmbientRT is being developed for environments with very limited resources in order to relieve the burden of the developer and to efficiently use the resources of the node. This paper presents

Análisis de la implementación software de un conformador de señales ultrasónicas para tiempo real

Directory of Open Access Journals (Sweden)

D. Romero-Laorden

2016-10-01

Full Text Available Resumen: Este trabajo analiza la implementación software en un sistema de imagen ultrasónica del Total Focusing Method para la compensación dinámica en tiempo real de los tiempos de vuelo para emisión y recepción de todos los puntos de la imagen. Para ello, haciendo uso de técnicas GPGPU, se analizan dos diferentes alternativas de implementación, mostrando como una planificación adecuada de acceso a los datos permite mejorar los tiempos de ejecución del algoritmo. Abstract: This paper studies the software implementation in an ultrasonic imaging system of Total Focusing Method. In order to accomplish real-time requirements parallel programming techniques have been used. Then, using GPGPU techniques, two different implementation alternatives are analysed, showing how proper planning of access to data improves the performance of the algorithm. Palabras clave: Imagen Ultrasónica, Procesamiento de Señal, Computación Paralela, GPU, CUDA, Keywords: Ultrasonic imaging GPU Signal Processing Parallel computing CUDA

LIBERACIÓN EN TIEMPO REAL DE LOS PRODUCTOS COMERCIALES DEL CENTRO DE INMUNOLOGÍA MOLECULAR

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Antonio E. Vallín García

2010-11-01

Full Text Available

Este artículo describe un Procedimiento de Liberación en Tiempo Real para los productos comerciales del Centro de Inmunología Molecular. El Procedimiento incorpora el conocimiento del proceso a través de todas las etapas del proceso productivo, evaluando los parámetros y controles de proceso para asegurar la calidad del Ingrediente Farmacéutico Activo y del Producto Final.  La aplicación sistemática disminuirá significativamente el tiempo de liberación, garantizando la calidad del producto, el cumplimiento de las regulaciones y mayor conocimiento del proceso y del producto.

This article describes a Procedure of Liberation in Real Time for the commercial products of the Center of Molecular Immunology. The Procedure incorporates the knowledge of the process through all the stages of the productive process, evaluating the parameters and process controls to assure the quality of the Active Pharmaceutical Ingredient and of the Final Product.  The systematic application will diminish the time of liberation, significantly guaranteeing the quality of the product, the execution of the regulations and bigger knowledge of the process and of the product.

Aportación al diseño de aplicaciones de tiempo real sobre arquitecturas paralelas

OpenAIRE

Graña Domínguez, Santiago

1997-01-01

A lo largo de esta tesis se planteará el uso de técnicas de prototipado rápido para el diseño detallado, construcción y pruebas de sistemas de tiempo real (STR) que ejecutan sobre arquitecturas paralelas o distribuidas. El entorno propuesto permite la verificación y validación del STR desde una óptica marcadamente experimental, contrastando con análisis más formales como el popular RMA (Rate Monotonic Analysis), que también son aplicables de forma complementaria, con objeto de obtener sistema...

Reconocimiento de gestos en tiempo real basado en heurísticas y reconocimiento de patrones

OpenAIRE

López Rincón, Omar

2015-01-01

Desde los inicios de la computación, el área de procesado de imagen se ha ido incrementando y llegando a nuevas fronteras gracias al incremento del poder computacional que no se detiene, más rutinas han llegado a ser posibles, entre ellas el procesado de imagen en tiempo real. El desarrollo en el procesado de imagen ha ido incrementando junto con el desarrollo de nuevos procesadores y velocidad de computo, esto mismo ha ido abarcando desde imágenes satelitales, medicina y hoy en día los prime...

Development of duplex real-time RT-PCR based on Taqman technology for detecting simultaneously the genome of pan-enterovirus and enterovirus 71.

Science.gov (United States)

Hwang, Seoyeon; Kang, Byunghak; Hong, Jiyoung; Kim, Ahyoun; Kim, Hyejin; Kim, Kisang; Cheon, Doo-Sung

2013-07-01

Human enterovirus (EV) 71 is the main etiological agent of hand, foot, and mouth disease (HFMD). It is associated with neurological complications, and caused fatalities during recent outbreaks in the Asia-Pacific region. Infections caused by EV71 could lead to many complications, ranging from brainstem encephalitis to pulmonary oedema, resulting in high mortality. In this study, a duplex real-time RT-PCR assay was developed in order to simultaneously detect pan-EV and EV71. EV71-specific primers and probes were designed based on the highly conserved VP1 region of EV71. Five EV71 strains were detected as positive, and no positive fluorescence signal was observed in the duplex real-time RT-PCR for other viral RNA, which showed 100% specificity for the selected panel, and no cross-reactions were observed in this duplex real-time RT-PCR. The EV71-specific duplex real-time RT-PCR was more sensitive than conventional RT-PCR, and detected viral titers that were 10-fold lower than those measured by the latter. Of the 381 HFMD clinical specimens, 196 (51.4%) cases were pan-EV-positive, of which 170 (86.7%) were EV71-positive when tested by pan-EV and EV71-specific duplex real-time RT-PCR. EV71-specific duplex real-time RT-PCR offers a rapid and sensitive method to detect EV71 from clinical specimens, and will allow quarantine measures to be taken more effectively during outbreaks. Copyright © 2013 Wiley Periodicals, Inc.

Data acquisition and real-time signal processing of plasma diagnostics on ASDEX Upgrade using LabVIEW RT

International Nuclear Information System (INIS)

Giannone, L.; Cerna, M.; Cole, R.; Fitzek, M.; Kallenbach, A.; Lueddecke, K.; McCarthy, P.J.; Scarabosio, A.; Schneider, W.; Sips, A.C.C.; Treutterer, W.; Vrancic, A.; Wenzel, L.; Yi, H.; Behler, K.; Eich, T.; Eixenberger, H.; Fuchs, J.C.; Haas, G.; Lexa, G.

2010-01-01

The existing VxWorks real-time system for the position and shape control in ASDEX Upgrade has been extended to calculate magnetic flux surfaces in real-time using a multi-core PCI Express system running LabVIEW RT 8.6. real-time signal processing of bolometers and manometers is performed with the on-board FPGA to calculate the measured radiated power flux and particle flux respectively from the raw data. Radiation feedback experiments use halo current measurements from the outer divertor with real-time median filter pre-processing to remove the excursions produced by ELMs. Integration of these plasma diagnostics into the control system by the exchange of XML sheets for communicating the real-time variables to be produced and consumed is in operation. Reflective memory and UDP are employed by the LabVIEW RT plasma diagnostics to communicate with the control system and other plasma diagnostics in a multi-platform real-time network.

Data acquisition and real-time signal processing of plasma diagnostics on ASDEX Upgrade using LabVIEW RT

Energy Technology Data Exchange (ETDEWEB)

Giannone, L., E-mail: Louis.Giannone@ipp.mpg.d [Max-Planck-Institut fuer Plasmaphysik, EURATOM-IPP Association, D-85748 Garching (Germany); Cerna, M. [National Instruments, Austin, TX 78759-3504 (United States); Cole, R.; Fitzek, M. [Unlimited Computer Systems GmbH, 82393 Iffeldorf (Germany); Kallenbach, A. [Max-Planck-Institut fuer Plasmaphysik, EURATOM-IPP Association, D-85748 Garching (Germany); Lueddecke, K. [Unlimited Computer Systems GmbH, 82393 Iffeldorf (Germany); McCarthy, P.J. [Department of Physics, University College Cork, Association EURATOM-DCU, Cork (Ireland); Scarabosio, A.; Schneider, W.; Sips, A.C.C.; Treutterer, W. [Max-Planck-Institut fuer Plasmaphysik, EURATOM-IPP Association, D-85748 Garching (Germany); Vrancic, A.; Wenzel, L.; Yi, H. [National Instruments, Austin, TX 78759-3504 (United States); Behler, K.; Eich, T.; Eixenberger, H.; Fuchs, J.C.; Haas, G.; Lexa, G. [Max-Planck-Institut fuer Plasmaphysik, EURATOM-IPP Association, D-85748 Garching (Germany)

2010-07-15

The existing VxWorks real-time system for the position and shape control in ASDEX Upgrade has been extended to calculate magnetic flux surfaces in real-time using a multi-core PCI Express system running LabVIEW RT 8.6. real-time signal processing of bolometers and manometers is performed with the on-board FPGA to calculate the measured radiated power flux and particle flux respectively from the raw data. Radiation feedback experiments use halo current measurements from the outer divertor with real-time median filter pre-processing to remove the excursions produced by ELMs. Integration of these plasma diagnostics into the control system by the exchange of XML sheets for communicating the real-time variables to be produced and consumed is in operation. Reflective memory and UDP are employed by the LabVIEW RT plasma diagnostics to communicate with the control system and other plasma diagnostics in a multi-platform real-time network.

EL TIEMPO

OpenAIRE

Jaramillo Ochoa, Jaramillo

2009-01-01

El tiempo es el aliado misterioso que nos envuelve y nos transporta, nos permite ser viajeros de nuestro propio tren sin reglas. Cómo saber qué tiempo tomar... Cómo saber qué tiempo ceder... Cómo saber cuando el tiempo es correcto... Es silencioso, es voraz, es traicionero, el peor de los enemigos: el tiempo no perdona. Cómo saber si el tiempo se detiene.

Beneficios que aporta la metodología MDE a los entornos de desarrollo de sistemas de tiempo real

Directory of Open Access Journals (Sweden)

César Cuevas

2013-04-01

Full Text Available Resumen: Se analizan los beneficios que aporta el empleo de la metodología Model-Driven Engineering (MDE cuando se utiliza como base y soporte de entornos de diseño de sistemas de tiempo real. Con esta metodología, se incrementa la facilidad de uso del entorno para el diseñador, ya que, en función del paradigma que utilice y de la fase del proceso de diseño que esté llevando a cabo, el entorno le ofrece una vista especializada del sistema, la cual presenta de una forma precisa y coherente la información sobre la que está decidiendo. Por otro lado, una infraestructura MDE facilita el desarrollo de herramientas y su integración en el entorno, ya que, a través de los mecanismos de gestión y transformación de modelos con los que está dotada, cada herramienta recibe únicamente la información que utiliza, estructurada de modo adecuado, y así mismo, puede generar sus resultados de la forma que le sea natural, ya que el entorno los sabe gestionar. Por último, la metodología MDE permite considerar el entorno de diseño de tiempo real como una vista especializada que se integra coherentemente en un entorno más general, el cual soporta las restantes fases del diseño del sistema. Abstract: This paper analyses the benefits provided by the Model-Driven Engineering (MDE methodology when it is used as the base support for real-time systems design environments. The application of MDE eases the environment usage by the designer, because depending on the chosen paradigm and on the stage of the development process, the environment offers a specialized view of the system, presenting in a precise and coherent fashion the information under decision. On the other hand, an MDE infrastructure facilitates the development of tools and their integration within the environment, as, through the model management and transformation mechanisms this infrastructure is equipped with, every tool receives as input the right information it uses, structured as it

Ring trial 2016 for Bluetongue virus detection by real-time RT-PCR in France.

Science.gov (United States)

Sailleau, Corinne; Viarouge, Cyril; Breard, Emmanuel; Vitour, Damien; Zientara, Stephan

2017-05-01

Since the unexpected emergence of BTV-8 in Northern Europe and the incursion of BTV-8 and 1 in France in 2006-2007, molecular diagnosis has considerably evolved. Several real-time RT-PCR (rtRT-PCR) methods have been developed and published, and are currently being used in many countries across Europe for BTV detection and typing. In France, the national reference laboratory (NRL) for orbiviruses develops and validates 'ready-to-use' kits with private companies for viral RNA detection. The regional laboratories network that was set up to deal with a heavy demand for analyses has used these available kits. From 2007, ring tests were organized to monitor the performance of the French laboratories. This study presents the results of 63 regional laboratories in the ring trial organized in 2016. Blood samples were sent to the laboratories. Participants were asked to use the rtRT-PCR methods in place in their laboratory, for detection of all BTV serotypes and specifically BTV-8. The French regional laboratories are able to detect and genotype BTV in affected animals. Despite the use of several methods (i.e. RNA extraction and different commercial rtRT-PCRs), the network is homogeneous. The ring trial demonstrated that the French regional veterinary laboratories have reliable and robust BTV diagnostic tools for BTV genome detection.

Development and implementation of the quality control panel of RT-PCR and real-time RT-PCR for avian influenza A (H5N1 surveillance network in mainland China

Directory of Open Access Journals (Sweden)

Wang Wei

2011-03-01

Full Text Available Abstract Background Reverse transcription PCR (RT-PCR and real time RT-PCR (rRT-PCR have been indispensable methods for influenza surveillance, especially for determination of avian influenza. The movement of testing beyond reference lab introduced the need of quality control, including the implementation of an evaluation system for validating personal training and sample proficiency testing. Methods We developed a panel with lysates of seasonal influenza virus (H1N1, H3N2 and B, serials of diluted H5N1 virus lysates, and in-vitro transcribed H5 hemaglutinin (HA and an artificial gene RNAs for RT-PCR and rRT-PCR quality control assessment. The validations of stability and reproducibility were performed on the panel. Additionally, the panel was implemented to assess the detection capability of Chinese human avian influenza networks. Results The panel has relatively high stability and good reproducibility demonstrated by kappa's tests. In the implementation of panel on Chinese human avian influenza networks, the results suggested that there were a relatively low number of discrepancies for both concise and reproducibility in Chinese avian influenza virus net works. Conclusions A quality control panel of RT-PCR and real-time RT-PCR for avian influenza A (H5N1 surveillance network was developed. An availably statistical data, which are used to assess the detection capability of networks on avian influenza virus (H5N1, can be obtained relatively easily through implementation of the panel on networks.

Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

Directory of Open Access Journals (Sweden)

Borges-Pérez Andrés

2008-12-01

Full Text Available Abstract Background The elucidation of gene expression patterns leads to a better understanding of biological processes. Real-time quantitative RT-PCR has become the standard method for in-depth studies of gene expression. A biologically meaningful reporting of target mRNA quantities requires accurate and reliable normalization in order to identify real gene-specific variation. The purpose of normalization is to control several variables such as different amounts and quality of starting material, variable enzymatic efficiencies of retrotranscription from RNA to cDNA, or differences between tissues or cells in overall transcriptional activity. The validity of a housekeeping gene as endogenous control relies on the stability of its expression level across the sample panel being analysed. In the present report we describe the first systematic evaluation of potential internal controls during tomato development process to identify which are the most reliable for transcript quantification by real-time RT-PCR. Results In this study, we assess the expression stability of 7 traditional and 4 novel housekeeping genes in a set of 27 samples representing different tissues and organs of tomato plants at different developmental stages. First, we designed, tested and optimized amplification primers for real-time RT-PCR. Then, expression data from each candidate gene were evaluated with three complementary approaches based on different statistical procedures. Our analysis suggests that SGN-U314153 (CAC, SGN-U321250 (TIP41, SGN-U346908 ("Expressed" and SGN-U316474 (SAND genes provide superior transcript normalization in tomato development studies. We recommend different combinations of these exceptionally stable housekeeping genes for suited normalization of different developmental series, including the complete tomato development process. Conclusion This work constitutes the first effort for the selection of optimal endogenous controls for quantitative real

Real Time Physiological Status Monitoring (RT-PSM): Accomplishments, Requirements, and Research Roadmap

Science.gov (United States)

2016-03-01

actionable information. With many lessons learned , the first implementation of real time physiological monitoring (RT-PSM) uses thermal-work strain... Bidirectional Inductive On-Body Network (BIONET) for WPSM Develop sensor links and processing nodes on-Soldier and non-RF links off-Soldier Elintrix...recent sleep watches (e.g., BASIS Peak, Intel Corp.) are attempting to parse sleep quality beyond duration and interruptions into deep and REM sleep

Development of a duplex real-time RT-PCR for the simultaneous detection and differentiation of Theiler's murine encephalomyelitis virus and rat theilovirus.

Science.gov (United States)

Yuan, Wen; Wang, Jing; Xu, Fengjiao; Huang, Bihong; Lian, Yuexiao; Rao, Dan; Yin, Xueqin; Wu, Miaoli; Zhu, Yujun; Zhang, Yu; Huang, Ren; Guo, Pengju

2016-10-01

Theiler's murine encephalomyelitis virus (TMEV) and rat theilovirus (RTV), the member of the genus Cardiovirus, are widespread in laboratory mice and rats, and are potential contaminants of biological materials. Cardioviruses infection may cause serious complications in biomedical research. To improve the efficiency of routine screening for Cardioviruses infection, a duplex real-time reverse transcriptase polymerase chain reaction (RT-PCR) assay was developed for simultaneous detection and differentiation of TMEV and RTV. The duplex assay was specific for reference strains of TMEV and RTV, and no cross-reaction was found with seven other rodent viruses. The limits of detection of both TMEV and RTV were 4×10(1) copies RNA/reaction. Reproducibility was estimated using standard dilutions, with coefficients of variation duplex real-time RT-PCR and conventional RT-PCR. For 439 clinical samples，95 samples were positive for TMEV and 72 samples were positive for RTV using duplex real-time RT-PCR approach, whereas only 77 samples were positive for TMEV and 66 samples were positive for RTV when conventional RT-PCR was applied. Mixed infections were found in 20 samples when analyzed by conventional RT-PCR whereas 30 samples were found to be mixed infection when duplex real-time RT-PCR was applied. This duplex assay provides a useful tool for routine health monitoring and screening of contaminated biological materials of these two viruses. Copyright © 2016 Elsevier B.V. All rights reserved.

Identification of genes for normalization of real-time RT-PCR data in breast carcinomas

DEFF Research Database (Denmark)

Lyng, Maria B; Laenkholm, Anne-Vibeke; Pallisgaard, Niels

2008-01-01

BACKGROUND: Quantitative real-time RT-PCR (RT-qPCR) has become a valuable molecular technique in basic and translational biomedical research, and is emerging as an equally valuable clinical tool. Correlation of inter-sample values requires data normalization, which can be accomplished by various...... means, the most common of which is normalization to internal, stably expressed, reference genes. Recently, such traditionally utilized reference genes as GAPDH and B2M have been found to be regulated in various circumstances in different tissues, emphasizing the need to identify genes independent...... of factors influencing the tissue, and that are stably expressed within the experimental milieu. In this study, we identified genes for normalization of RT-qPCR data for invasive breast cancer (IBC), with special emphasis on estrogen receptor positive (ER+) IBC, but also examined their applicability to ER...

Evaluation Study of the Tactical Atmospheric Modeling System/Real-Time (TAMS-RT) at NPMOC San Diego

National Research Council Canada - National Science Library

Reiss, Arthur

1999-01-01

...) has been developed by the Naval Research Lab in Monterey, California to meet this task. A forecast system employing COAMPS, called the Tactical Atmospheric Mesoscale System- Real Time (TAMS-RT...

LabVIEW aplicado al diagnóstico de estado en tiempo real de transformadores de potencia; LabVIEW apply to diagnostic that assess the condition in real time of the power transfor

Directory of Open Access Journals (Sweden)

Eliezer Fernández Padrón

2014-04-01

Full Text Available Este trabajo está dirigido al rediseño del Sistema de Adquisición y Procesamiento de Datos de la Estación para el Diagnóstico de Estado en Tiempo Real del Autotransformador de Potencia No. 2 de 100MVA, de la Subestación Barquisimeto de Venezuela, a partir de controladores embebidos en tiempo real de la familia cRIO de National Instruments y las técnicas de programación que ofrece la plataforma NI LabVIEW, con la finalidad de integrar un sistema único (software-hardware que permita aumentar la calidad en las mediciones, el procesamiento de los datos, la interface hombre-máquina, su capacidad de expansión y reproducibilidad. El mismo puede ser accedido mediante navegadores Web de Internet y transferir datos en tiempo real a través de la red, además es capaz de trabajar autónomo presentando respaldo en comunicación y alimentación de energía eléctrica, logrando un mejor servicio de diagnóstico continuo en dicho autotransformador.  This work is focused on the redesign of the Acquisition System and Processing Data of the Station for the Diagnostic that Assess the Condition in Real Time of the 100MVA Power Autotransformer No. 2 of the Substation Barquisimeto from Venezuela with the embedded controllers in real time of the cRIO technology of the National Instruments and the programming techniques supported by the NI LabVIEW platform with the purpose of integrating an unique system (hardware-software that allows to improve the quality in the measurements, the processing data, the man-machine interface, its expansion capability and reproduction. This system can be obtained by the internet web browser and it can transfer data in real time through the network, it is also able to work autonomous having a back in communicating and electrical energy feeding, getting a better continuous diagnostic service and the autotransformer.

LabVIEW aplicado al diagnóstico de estado en tiempo real de transformadores de potencia LabVIEW apply to diagnostic that assess the condition in real time of the power transformers

Directory of Open Access Journals (Sweden)

Eliezer Fernández Padrón

2012-02-01

Full Text Available Este trabajo está dirigido al rediseño del Sistema de Adquisición y Procesamiento de Datos de la Estación para el Diagnóstico de Estado en Tiempo Real del Autotransformador de Potencia No. 2 de 100MVA, de la Subestación Barquisimeto de Venezuela, a partir de controladores embebidos en tiempo real de la familia cRIO de National Instruments y las técnicas de programación que ofrece la plataforma NI LabVIEW, con la finalidad de integrar un sistema único (software-hardware que permita aumentar la calidad en las mediciones, el procesamiento de los datos, la interface hombre-máquina, su capacidad de expansión y reproducibilidad. El mismo puede ser accedido mediante navegadores Web de Internet y transferir datos en tiempo real a través de la red, además es capaz de trabajar autónomo presentando respaldo en comunicación y alimentación de energía eléctrica, logrando un mejor servicio de diagnóstico continuo en dicho autotransformador.This work is focused on the redesign of the Acquisition System and Processing Data of the Station for the Diagnostic that Assess the Condition in Real Time of the 100MVA Power Autotransformer No. 2 of the Substation Barquisimeto from Venezuela with the embedded controllers in real time of the cRIO technology of the National Instruments and the programming techniques supported by the NI LabVIEW platform with the purpose of integrating an unique system (hardware-software that allows to improve the quality in the measurements, the processing data, the man-machine interface, its expansion capability and reproduction. This system can be obtained by the internet web browser and it can transfer data in real time through the network, it is also able to work autonomous having a back in communicating and electrical energy feeding, getting a better continuous diagnostic service and the autotransformer.

Real time RT-PCR assay for detection of different serotypes of FMDV in Egypt

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Laila El-Shehawy

Full Text Available Aim: The present study indicated that rRT-PCR could be provided for the detection of FMDV in infected, contact and carrier cattle and also provide a rapid sensitive tool aiming to aid in rapid disease detection and control. Foot and Mouth disease virus serotypes O and A still existing in Egypt. In January 2012, sever outbreaks struck the animal population in most Egyptian 1 governorates. The causative virus was identified as FMDV SAT2. Material and Methods: Five samples of tongue epithelium (ET and five oesophageal-pharyngeal (OP fluid samples were collected from FMD suspected cattle in infected farm at El-Fayoum and 20 OP samples from in-contact cattle at the same farm in addition to 30 OP samples from apparently healthy cattle at three different localities in El-Fayoum governorate (12 from Fayoum; 9 from Sinoras and 9 from Edsa in order to detect carrier cattle. All of these samples were collected during November and December 2011 and January 2012. Results: All the ET and OP samples were inoculated on BHK cell culture and baby mice. The obtained results were identified using complement fixation test in addition to real-time reverse transcriptase polymerase chain reaction (rRT-PCR. In the infected farm at El-Fayoum FMDV type SAT2 was detected in cattle which are considered as the first introduction of this type while FMDV type O and SAT2 were detected in the in-contact cattle in the same farm. The sensitivity of rRT-PCR was cleared in the in-contact cattle as 13 out of 20 OP samples were positive to FMDV by rRT-PCR while 11 out of 20 OP samples were positive to FMDV by CFT. The OP samples collected from apparently healthy cattle from Fayoum, Sinoras and Edsa localities in Fayoum governorate demonstrate the circulation of the FMDV type A, O and the recent SAT2 in carrier cattle which threaten cattle population in Fayoum governorate. Also the sensitivity of real time RT-PCR over the CFT in detection of FMDV carrier cattle was clearly noticed in

OR.NET RT: how service-oriented medical device architecture meets real-time communication.

Science.gov (United States)

Pfeiffer, Jonas H; Kasparick, Martin; Strathen, Benjamin; Dietz, Christian; Dingler, Max E; Lueth, Tim C; Timmermann, Dirk; Radermacher, Klaus; Golatowski, Frank

2018-02-23

Today's landscape of medical devices is dominated by stand-alone systems and proprietary interfaces lacking cross-vendor interoperability. This complicates or even impedes the innovation of novel, intelligent assistance systems relying on the collaboration of medical devices. Emerging approaches use the service-oriented architecture (SOA) paradigm based on Internet protocol (IP) to enable communication between medical devices. While this works well for scenarios with no or only soft timing constraints, the underlying best-effort communication scheme is insufficient for time critical data. Real-time (RT) networks are able to reliably guarantee fixed latency boundaries, for example, by using time division multiple access (TDMA) communication patterns. However, deterministic RT networks come with their own limitations such as tedious, inflexible configuration and a more restricted bandwidth allocation. In this contribution we overcome the drawbacks of both approaches by describing and implementing mechanisms that allow the two networks to interact. We introduce the first implementation of a medical device network that offers hard RT guarantees for control and sensor data and integrates into SOA networks. Based on two application examples we show how the flexibility of SOA networks and the reliability of RT networks can be combined to achieve an open network infrastructure for medical devices in the operating room (OR).

Diseño de un Software de Intermediación de Comunicación para Sistemas Distribuidos de Tiempo Real Críticos en Java

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Daniel Tejera

2013-04-01

Full Text Available Resumen: Las facilidades e independencia de plataforma de Java han generado un gran interés en la comunidad de tiempo real. Dicho interés se ha reflejado en la especificación RTSJ (Real-Time Specification for Java, que extiende y adapta el lenguaje Java para permitir el desarrollo de sistemas de tiempo real. Adicionalmente, se han desarrollado perfiles de RTSJ para garantizar la predecibilidad en sistemas de tiempo real críticos. Sin embargo, RTSJ y sus perfiles no proporcionan facilidades para sistemas distribuidos. El objetivo de este trabajo es afrontar dicha limitación definiendo un nuevo modelo de RMI (Remote Method Invocation basado en los principales perfiles de RTSJ para sistemas de tiempo real crítico. Este trabajo presenta el diseño y la implementación de RMI-HRT (RMI-Hard Real-Time que está enfocado a sistemas de tiempo real crítico con requisitos de alta integridad. Abstract: Distributed real-time embedded systems are becoming increasingly important to society. More demands will be made on them and greater reliance will be placed on the delivery of their services. A relevant subset of them is high-integrity or hard real-time systems, where failure can cause loss of life, environmental harm, or significant financial loss.Additionally, the evolution of communication networks and paradigms as well as the necessity of demanding processing power and fault tolerance, motivated the interconnection between electronic devices; many of the communications have the possibility of transferring data at a high speed. The concept of distributed systems emerged as systems where different parts are executed on several nodes that interact with each other via a communication network.Java's popularity, facilities and platform independence have made it an interesting language for the real-time and embedded community. This was the motivation for the development of RTSJ (Real-Time Specification for Java, which is a language extension intended to

A duplex real-time RT-PCR assay for detecting H5N1 avian influenza virus and pandemic H1N1 influenza virus

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Qin E-de

2010-06-01

Full Text Available Abstract A duplex real-time reverse transcriptase polymerase chain reaction (RT-PCR assay was improved for simultaneous detection of highly pathogenic H5N1 avian influenza virus and pandemic H1N1 (2009 influenza virus, which is suitable for early diagnosis of influenza-like patients and for epidemiological surveillance. The sensitivity of this duplex real-time RT-PCR assay was 0.02 TCID50 (50% tissue culture infective dose for H5N1 and 0.2 TCID50 for the pandemic H1N1, which was the same as that of each single-target RT-PCR for pandemic H1N1 and even more sensitive for H5N1 with the same primers and probes. No cross reactivity of detecting other subtype influenza viruses or respiratory tract viruses was observed. Two hundred and thirty-six clinical specimens were tested by comparing with single real-time RT-PCR and result from the duplex assay was 100% consistent with the results of single real-time RT-PCR and sequence analysis.

Tiempo de los hechos, tiempo de la historia

OpenAIRE

Ruiz Torres, Pedro

1996-01-01

A lo largo de los siglos ha habido distintas experiencias y formas de representar el tiempo que han dado lugar a diversas topologías y modos de concebir su dirección. Este artículo se centra en algunas de esas representaciones del tiempo en la cultura moderna y en sus repercusiones en la historiografía, para terminar con una breve reflexión sobre la diferencia entre el tiempo pensado como algo externo y objetivo, y el tiempo en tanto construcción subjetiva.

Expansion of the Real-Time SPoRT-Land Information System for NOAA/National Weather Service Situational Awareness and Local Modeling Applications

Science.gov (United States)

Case, Jonathan L; White, Kristopher D.

2014-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center in Huntsville, AL is running a real-time configuration of the Noah land surface model (LSM) within the NASA Land Information System (LIS) framework (hereafter referred to as the "SPoRT-LIS"). Output from the real-time SPoRT-LIS is used for (1) initializing land surface variables for local modeling applications, and (2) displaying in decision support systems for situational awareness and drought monitoring at select NOAA/National Weather Service (NWS) partner offices. The experimental CONUS run incorporates hourly quantitative precipitation estimation (QPE) from the National Severe Storms Laboratory Multi- Radar Multi-Sensor (MRMS) which will be transitioned into operations at the National Centers for Environmental Prediction (NCEP) in Fall 2014.This paper describes the current and experimental SPoRT-LIS configurations, and documents some of the limitations still remaining through the advent of MRMS precipitation analyses in the SPoRT-LIS land surface model (LSM) simulations.

¿POR QUÉ LEIBNIZ REQUIERE DEL TIEMPO ABSOLUTO?

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NICOLÁS VAUGHAN C

2007-01-01

Full Text Available En este ensayo pongo en contraposición dos doctrinas conspicuamente leibnicianas: la doctrina del tiempo relacional e ideal, y la doctrina de la armonía preestablecida. Argumentaré que si todas las substancias están necesariamente coordinadas, entonces no tiene sentido negar el carácter absoluto y real del tiempo. En la primera sección describiré la concepción newtoniana y clarkeana del tiempo absoluto; en la segunda discutiré la crítica leibniciana a dicha concepción, crítica sobre la que se erige su doctrina relacional e ideal del tiempo; en la tercera sección daré un vistazo a la metafísica monádica madura de Leibniz, haciendo especial énfasis en la doctrina de la armonía preestablecida; finalmente, en la última sección sugeriré la existencia de una tensión irreconciliable entre estas dos doctrinas.

Reconfiguración Dinámica de Sistemas Distribuidos en Tiempo-Real Basada en Agentes

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O. Esquivel-Flores

2012-07-01

Full Text Available Resumen: Actualmente los sistemas distribuidos están presentes en diversas aplicaciones dentro de la industria e investigación. Este tipo de sistemas está restringido al cumplimiento de condiciones temporales lo que los convierte en sistemas de tiempo crítico que ante la presencia de fallas es necesario tomar decisiones que eviten la pérdida de plazos, disminución de desempeñno, inestabilidad o la suspensión total del sistema. Una estrategia para lograr lo anterior es la reconfiguración dinámica de la estructura del sistema con el objetivo de contrarrestar el efecto de las fallas. En este artículo se presenta una propuesta de reconfiguración dinámica y distribuida que se basa en considerar a cada elemento del sistema distribuido como un agente con capacidad comunicación y cooperación que decida en conjunto con otros agentes una acción de reconfiguración. Se propone la modificación de periodos de muestreo de los agentes que sensan los estados del sistema, la disminución de la actividad de los agentes con falla y/o la utilización de algoritmos de voto. Para alguna posible falla en el sistema se hace corresponder un tipo particular de reconfiguración con base en el intercambio de información entre agentes para tomar un acuerdo consensado. El esquema de reconfiguración dinámico que se propone es implementado en el control de vuelo de un prototipo de helicóptero de dos hélices en el que se incluye un sistema distribuido que utiliza un medio de comunicación común entre sus componentes para forma el lazo cerrado de control de un sistema. La respuesta del sistema reconfigurado es explorada por medio de simulaciones numéricas realizadas en Matlab y Simulink utilizando TrueTime como herramienta de simulación de tiempo real. Abstract: Currently distributed systems are present in several applications in industry and research, such systems are restricted to time conditions. The presence of failures in these time critical systems

Single reaction, real time RT-PCR detection of all known avian and human metapneumoviruses.

Science.gov (United States)

Lemaitre, E; Allée, C; Vabret, A; Eterradossi, N; Brown, P A

2018-01-01

Current molecular methods for the detection of avian and human metapneumovirus (AMPV, HMPV) are specifically targeted towards each virus species or individual subgroups of these. Here a broad range SYBR Green I real time RT-PCR was developed which amplified a highly conserved fragment of sequence in the N open reading frame. This method was sufficiently efficient and specific in detecting all MPVs. Its validation according to the NF U47-600 norm for the four AMPV subgroups estimated low limits of detection between 1000 and 10copies/μL, similar with detection levels described previously for real time RT-PCRs targeting specific subgroups. RNA viruses present a challenge for the design of durable molecular diagnostic test due to the rate of change in their genome sequences which can vary substantially in different areas and over time. The fact that the regions of sequence for primer hybridization in the described method have remained sufficiently conserved since the AMPV and HMPV diverged, should give the best chance of continued detection of current subgroups and of potential unknown or future emerging MPV strains. Copyright © 2017 Elsevier B.V. All rights reserved.

El tiempo y la historia. 1: Tiempo del historiador, tiempo del filósofo

OpenAIRE

Fortuny, F. J. (Francesc J.), 1936-2004

1998-01-01

No soy historiador. No voy a escribir algo que pueda parecer una historia de la idea de tiempo en la Edad Media. Ni puedo permitirme, como si fuera un dios menor, atemporal y omnisciente, dar sabios consejos a los historiadores. Un filósofo no puede adoctrinar a los profesionales de la historia sobre cómo usar sus expresiones temporales con precisión, o dictaminar sobre el meollo con- ceptual y entitativo del tiempo que hace posible su profesión, tiempo de historiadores.

A Pan-Lyssavirus Taqman Real-Time RT-PCR Assay for the Detection of Highly Variable Rabies virus and Other Lyssaviruses.

Science.gov (United States)

Wadhwa, Ashutosh; Wilkins, Kimberly; Gao, Jinxin; Condori Condori, Rene Edgar; Gigante, Crystal M; Zhao, Hui; Ma, Xiaoyue; Ellison, James A; Greenberg, Lauren; Velasco-Villa, Andres; Orciari, Lillian; Li, Yu

2017-01-01

Rabies, resulting from infection by Rabies virus (RABV) and related lyssaviruses, is one of the most deadly zoonotic diseases and is responsible for up to 70,000 estimated human deaths worldwide each year. Rapid and accurate laboratory diagnosis of rabies is essential for timely administration of post-exposure prophylaxis in humans and control of the disease in animals. Currently, only the direct fluorescent antibody (DFA) test is recommended for routine rabies diagnosis. Reverse-transcription polymerase chain reaction (RT-PCR) based diagnostic methods have been widely adapted for the diagnosis of other viral pathogens, but there is currently no widely accepted rapid real-time RT-PCR assay for the detection of all lyssaviruses. In this study, we demonstrate the validation of a newly developed multiplex real-time RT-PCR assay named LN34, which uses a combination of degenerate primers and probes along with probe modifications to achieve superior coverage of the Lyssavirus genus while maintaining sensitivity and specificity. The primers and probes of the LN34 assay target the highly conserved non-coding leader region and part of the nucleoprotein (N) coding sequence of the Lyssavirus genome to maintain assay robustness. The probes were further modified by locked nucleotides to increase their melting temperature to meet the requirements for an optimal real-time RT-PCR assay. The LN34 assay was able to detect all RABV variants and other lyssaviruses in a validation panel that included representative RABV isolates from most regions of the world as well as representatives of 13 additional Lyssavirus species. The LN34 assay was successfully used for both ante-mortem and post-mortem diagnosis of over 200 clinical samples as well as field derived surveillance samples. This assay represents a major improvement over previously published rabies specific RT-PCR and real-time RT-PCR assays because of its ability to universally detect RABV and other lyssaviruses, its high

A Pan-Lyssavirus Taqman Real-Time RT-PCR Assay for the Detection of Highly Variable Rabies virus and Other Lyssaviruses.

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Ashutosh Wadhwa

2017-01-01

Full Text Available Rabies, resulting from infection by Rabies virus (RABV and related lyssaviruses, is one of the most deadly zoonotic diseases and is responsible for up to 70,000 estimated human deaths worldwide each year. Rapid and accurate laboratory diagnosis of rabies is essential for timely administration of post-exposure prophylaxis in humans and control of the disease in animals. Currently, only the direct fluorescent antibody (DFA test is recommended for routine rabies diagnosis. Reverse-transcription polymerase chain reaction (RT-PCR based diagnostic methods have been widely adapted for the diagnosis of other viral pathogens, but there is currently no widely accepted rapid real-time RT-PCR assay for the detection of all lyssaviruses. In this study, we demonstrate the validation of a newly developed multiplex real-time RT-PCR assay named LN34, which uses a combination of degenerate primers and probes along with probe modifications to achieve superior coverage of the Lyssavirus genus while maintaining sensitivity and specificity. The primers and probes of the LN34 assay target the highly conserved non-coding leader region and part of the nucleoprotein (N coding sequence of the Lyssavirus genome to maintain assay robustness. The probes were further modified by locked nucleotides to increase their melting temperature to meet the requirements for an optimal real-time RT-PCR assay. The LN34 assay was able to detect all RABV variants and other lyssaviruses in a validation panel that included representative RABV isolates from most regions of the world as well as representatives of 13 additional Lyssavirus species. The LN34 assay was successfully used for both ante-mortem and post-mortem diagnosis of over 200 clinical samples as well as field derived surveillance samples. This assay represents a major improvement over previously published rabies specific RT-PCR and real-time RT-PCR assays because of its ability to universally detect RABV and other lyssaviruses

La savia del tiempo. Apuntes para una concepción relacional del tiempo

OpenAIRE

Garrido-Maturano, Ángel E.

2008-01-01

El artículo primero «abre» la tijera del tiempo y muestra por qué tiempo cósmico y tiempo vivido son irreductibles uno a otro. En segundo lugar «afila» las hojas de la tijera y analiza tanto tiempo cósmico cuanto tiempo vivido como categorías relacionales y la alteridad como conditio sine qua non de la efectividad del tiempo. En tercer lugar «cierra» la tijera señalando los rasgos formales comunes a tiempo cósmico y vivido. Finalmente se pregunta en qué med...

BIBLIOTECARIO EN LÍNEA: el servicio de referencia virtual en tiempo real de la Biblioteca de la Facultad de Agronomía

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Eugenia Ortiz

2013-12-01

Full Text Available El presente artículo aborda el desarrollo del Servicio de Referencia Virtual en Tiempo Real del Departamento de Documentación y Biblioteca de la Facultad de Agronomía: el Bibliotecario en Línea. Se hace hincapié en el proceso de implementación, desarrollo y evaluación del servicio, finalizando con una breve conclusión de la experiencia.

Detection panel for identification of twelve hemorrhagic viruses using real-time RT-PCR.

Science.gov (United States)

Fajfr, M; Neubauerová, V; Pajer, P; Kubíčková, P; Růžek, D

2014-09-01

Viral hemorrhagic fevers are caused by viruses from four viral families and develop diseases with high fatality rates. However, no commercial diagnostic assay for these pathogens is available. We developed real-time RT-PCR assays for viruses Ebola, Marburg, Lassa, Guanarito, Machupo, Junin, Sabiá, Seoul, Puumala, Hantaan, Crimean-Congo hemorrhagic fever virus and Rift Valley fever virus. The assays were optimized for identical reaction conditions and can be performed using several types of real-time PCR instruments, both capillary and plate, including a portable Ruggedized Advanced Pathogen Identification Device (R.A.P.I.D.) (Idaho Technology, Inc.). In combination with primers and probes from previously published studies, we present a simple system for rapid identification of hemorrhagic filoviruses, arenaviruses and bunyaviruses with sufficient sensitivity for first contact laboratory and diagnosis under field conditions.

A novel and highly sensitive real-time nested RT-PCR assay in a single closed tube for detection of enterovirus.

Science.gov (United States)

Shen, Xin-Xin; Qiu, Fang-Zhou; Zhao, Huai-Long; Yang, Meng-Jie; Hong, Liu; Xu, Song-Tao; Zhou, Shuai-Feng; Li, Gui-Xia; Feng, Zhi-Shan; Ma, Xue-Jun

2018-03-01

The sensitivity of qRT-PCR assay is not adequate for the detection of the samples with lower viral load, particularly in the cerebrospinal fluid (CSF) of patients. Here, we present the development of a highly sensitive real-time nested RT-PCR (RTN RT-PCR) assay in a single closed tube for detection of human enterovirus (HEV). The clinical performance of both RTN RT-PCR and qRT-PCR was also tested and compared using 140 CSF and fecal specimens. The sensitivities of RTN RT-PCR assay for EV71, Coxsackievirus A (CVA)16, CVA6 and CVA10 achieved 10 -8 dilution with a corresponding Ct value of 38.20, 36.45, 36.75, and 36.45, respectively, which is equal to traditional two-step nested RT-PCR assay and approximately 2-10-fold lower than that of qRT-PCR assay. The specificity of RTN RT-PCR assay was extensively analyzed insilico and subsequently verified using the reference isolates and clinical samples. Sixteen qRT-PCR-negative samples were detected by RTN RT-PCR and a variety of enterovirus serotypes was identified by sequencing of inner PCR products. We conclude RTN RT-PCR is more sensitive than qRT-PCR for the detection of HEV in clinical samples. Copyright © 2017 Elsevier Inc. All rights reserved.

Detection of ROS1 Gene Rearrangement in Lung Adenocarcinoma: Comparison of IHC, FISH and Real-Time RT-PCR

OpenAIRE

Shan, Ling; Lian, Fang; Guo, Lei; Qiu, Tian; Ling, Yun; Ying, Jianming; Lin, Dongmei

2015-01-01

Aims To compare fluorescence in situ hybridization (FISH), immunohistochemistry (IHC) and quantitative real-time reverse transcription-PCR (qRT-PCR) assays for detection of ROS1 fusion in a large number of ROS1-positive lung adenocatcinoma (ADC) patients. Methods Using IHC analysis, sixty lung ADCs including 16 cases with ROS1 protein expression and 44 cases without ROS1 expression were selected for this study. The ROS1 fusion status was examined by FISH and qRT-PCR assay. Results Among 60 ca...

Cuantificación de citocinas caninas mediante reacción en cadena de la polimerasa de transcriptasa reversa en tiempo real

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Omar A. Saldarriaga

2006-10-01

Full Text Available Introducción. Los caninos son el principal reservorio domestico de la leishmaniasis visceral en el Nuevo y Viejo mundo. La reacción en cadena de la polimerasa de transcriptasa reversa en tiempo real para la medición de citocinas caninas no ha sido implementada para el estudio de la leishmaniasis visceral. Objetivo. Estandarizar la cuantificación relativa de IFN-g, IL-4, IL-10, IL-12p40 y IL-12p35 caninas utilizando reacción en cadena de la polimerasa de transcriptasa reversa en tiempo real. Materiales y métodos. Células mononucleares de sangre periférica de perros Fox-Hound fueron estimuladas con ConA, LPS y extracto de Staphylococcus aureus. El ARN fue utilizado en la reacción en cadena de la polimerasa de transcriptasa reversa en tiempo real de un solo paso para optimizar las concentraciones de iniciadores y sondas especificas de cada citocina, generar curvas estándar, confirmar la eficiencia de amplificación de las citocinas y del normalizador (18S ARNr y cuantificar la expresión de ARN. El método comparativo Ct fue utilizado para determinar los niveles relativos de expresión de ARN en las muestras, expresado como el incremento en el número de veces comparado con los controles. Resultados. El coeficiente de regresión para las curvas estándar y las eficiencias de amplificación de las citocinas y el normalizador, indicaron que la cuantificación fue confiable en un amplio rango de concentraciones de ARN. La activación de células mononucleares de sangre periférica resultó en un incremento en la expresión de IFN-g (132, IL-4 (8.8, IL-10 (7,2, y IL-12p40 (275, relativo a células control. La expresión basal de IL-12p35 fue también detectada. Conclusión. Esta metodología, comparada con los métodos convencionales disponibles para la medición de citocinas, ofrece varias ventajas y podría ser utilizada en estudios sobre inmunopatogenia e inmunidad en leishmaniasis visceral canina.

Tiempo de Respuestas y Experiencia de Usuario Estudio Experimental

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Delvis Echeverria

2016-12-01

Full Text Available La investigación está fundamentada por un estudio experimental, enfocado en la evaluación del comportamiento de los usuarios finales interactuando con tiempos de respuestas en aplicaciones reales. Se tomará como base el aporte de los autores Doherty y Thadani, investigadores de IBM relacionado con los tiempos de respuestas, y las investigaciones de Jacob Nielsen. Se llevarán a cabo un test con usuarios finales, y se expondrán optimizaciones a través de del uso de herramientas que contribuirán a mejorar los tiempos de respuestas de las aplicaciones web. Todo esto engloba una primera instancia de un proyecto que se está llevando a cabo en la empresa GeneXus Consulting, pretendiéndose lograr un punto de encuentro entre el rendimiento de las aplicaciones y la experiencia de usuario.

Generación Automática de Software para Sistemas de Tiempo Real: Un Enfoque basado en Componentes, Modelos y Frameworks

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Diego Alonso

2012-04-01

Full Text Available Resumen: Los Sistemas de Tiempo-Real poseen características que los hacen particularmente sensibles a las decisiones arquitectónicas que se adopten. El uso de Frameworks y Componentes ha demostrado ser eficaz en la mejora de la productividad y calidad del software, sobre todo si se combina con enfoques de Líneas de Productos. Sin embargo, los resultados en cuanto a reutilización y estandarización dejan patente la ausencia de portabilidad tanto de los diseños como las implementaciones basadas en componentes. Este artículo, fundamentado en el Desarrollo de Software Dirigido por Modelos, presenta un enfoque que separa la descripción de aplicaciones de tiempo–real basadas en componentes de sus posibles implementaciones para distintas plataformas. Esta separación viene soportada por la integración automática del código obtenido a partir de los modelos de entrada en frameworks implementados usando tecnología orientada a objetos. Asimismo, se detallan las decisiones arquitectónicas adoptadas en la implementación de uno de estos frameworks, que se utilizará como caso de estudio para ilustrar los beneficios derivados del enfoque propuesto. Por último, se realiza una comparativa en términos de coste de desarrollo con otros enfoques alternativos. Abstract: Real-Time Systems have some characteristics that make them particularly sensitive to architectural decisions. The use of Frameworks and Components has proven effective in improving productivity and software quality, especially when combined with Software Product Line approaches. However, the results in terms of software reuse and standardization make the lack of portability of both the design and componentbased implementations clear. This article, based on the Model- Driven Software Development paradigm, presents an approach that separates the component-based description of real-time applications from their possible implementations on different

La Suspensión del Tiempo

OpenAIRE

Campo Baeza, Alberto

2011-01-01

Burnt Norton es el primero de los FOUR QUARTETS, una de las obras clave de T.S. Elliot (1). En sus 6 primeras líneas utiliza hasta 7 veces la palabra tiempo con reiteración sorprendente. “El tiempo presente y el tiempo pasado / quizás ambos están contenidos / el presente en el tiempo futuro / y el tiempo futuro en el tiempo pasado. / Si todo el tiempo es eternamente presente / todo tiempo es recuperable.” Pues éste, el tiempo que los poetas tan bien expresan, es el tiempo que quiere atr...

Mal tiempo, tiempo maligno, tiempo de subversión ritual. La temposensitividad agrofestiva invernal

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Del Campo Tejedor, Alberto

2006-06-01

Full Text Available In the light of a number of festive, ritual, poetico-musical and literary expresions, from Andalusia and elsewhere, the author discusses time as lived by agrarian cultures: a syncretic time, resulting from the superposition of civico-political, religious and peasant calendars; a cyclic time, given the effects of astronomico-meteorological time on nature and the subsequent cultural response on both the instrumental dimension (the work in the fields and the expresive dimension (the rituals and the festivals; and, finally, an ages-old bipolar time, experienced as the succession of two alternating seasons —wintertime and summertime—which also underlies a dichotomous agrofestive time-sensitiveness analyzed here under the following hypothesis: during the months of «good weather,» especially May and June, the rituals have a propitiatory and positively extolling sense; they mimetically dramatize the union between earth, vegetation, animals and humans by means of prototypes and archetypes that symbolically recreate the natural order of things. By contrast, the wintertime rituals and festivals—from 1st November till Carnival, and particularly around Christmas—all have in common a grotesque character and a sense of inverted order, symbolically signifying, with a logic at once serio-comic and ambiguous, the dark side of existence, while ritually conjuring up the fears of bad weather, of fateful and pernicious time, the time of cold nights, hunger and death.

A la luz de algunas expresiones festivas, rituales, poético-musicales y literarias, de Andalucía y otros contextos, el artículo aborda el tiempo vivido por las culturas agroganaderas: un tiempo sincrético, como consecuencia de la superposición de los calendarios civil-político, religioso y campesino; un tiempo cíclico, fruto de la incidencia del tiempo astronómico-meteorológico en la naturaleza y la consiguiente respuesta cultural en el plano instrumental (los trabajos agr

Development of a highly sensitive real-time nested RT-PCR assay in a single closed tube for detection of enterovirus 71 in hand, foot, and mouth disease.

Science.gov (United States)

Niu, Peihua; Qi, Shunxiang; Yu, Benzhang; Zhang, Chen; Wang, Ji; Li, Qi; Ma, Xuejun

2016-11-01

Enterovirus 71 (EV71) is one of the major causative agents of outbreaks of hand, foot, and mouth disease (HFMD). A commercial TaqMan probe-based real-time PCR assay has been widely used for the differential detection of EV71 despite its relatively high cost and failure to detect samples with a low viral load (Ct value > 35). In this study, a highly sensitive real-time nested RT-PCR (RTN RT-PCR) assay in a single closed tube for detection of EV71 in HFMD was developed. The sensitivity and specificity of this assay were evaluated using a reference EV71 stock and a panel of controls consisting of coxsackievirus A16 (CVA16) and common respiratory viruses, respectively. The clinical performance of this assay was evaluated and compared with those of a commercial TaqMan probe-based real-time PCR (qRT-PCR) assay and a traditional two-step nested RT-PCR assay. The limit of detection for the RTN RT-PCR assay was 0.01 TCID50/ml, with a Ct value of 38.3, which was the same as that of the traditional two-step nested RT-PCR assay and approximately tenfold lower than that of the qRT-PCR assay. When testing the reference strain EV71, this assay showed favorable detection reproducibility and no obvious cross-reactivity. The testing results of 100 clinical throat swabs from HFMD-suspected patients revealed that 41 samples were positive for EV71 by both RTN RT-PCR and traditional two-step nested RT-PCR assays, whereas only 29 were EV71 positive by qRT-PCR assay.

Selection of Housekeeping Genes for Transgene Expression Analysis in Eucommia ulmoides Oliver Using Real-Time RT-PCR

Directory of Open Access Journals (Sweden)

Ren Chen

2010-01-01

Full Text Available In order to select appropriate housekeeping genes for accurate calibration of experimental variations in real-time (RT- PCR results in transgene expression analysis, particularly with respect to the influence of transgene on stability of endogenous housekeeping gene expression in transgenic plants, we outline a reliable strategy to identify the optimal housekeeping genes from a set of candidates by combining statistical analyses of their (RT- PCR amplification efficiency, gene expression stability, and transgene influences. We used the strategy to select two genes, ACTα and EF1α, from 10 candidate housekeeping genes, as the optimal housekeeping genes to evaluate transgenic Eucommia ulmoides Oliver root lines overexpressing IPPI or FPPS1 genes, which are involved in isoprenoid biosynthesis.

Use of quantitative real-time RT-PCR to investigate the correlation between viremia and viral shedding of canine distemper virus, and infection outcomes in experimentally infected dogs.

Science.gov (United States)

Sehata, Go; Sato, Hiroaki; Ito, Toshihiro; Imaizumi, Yoshitaka; Noro, Taichi; Oishi, Eiji

2015-07-01

We used real-time RT-PCR and virus titration to examine canine distemper virus (CDV) kinetics in peripheral blood and rectal and nasal secretions from 12 experimentally infected dogs. Real-time RT-PCR proved extremely sensitive, and the correlation between the two methods for rectal and nasal (r=0.78, 0.80) samples on the peak day of viral RNA was good. Although the dogs showed diverse symptoms, viral RNA kinetics were similar; the peak of viral RNA in the symptomatic dogs was consistent with the onset of symptoms. These results indicate that real-time RT-PCR is sufficiently sensitive to monitor CDV replication in experimentally infected dogs regardless of the degree of clinical manifestation and suggest that the peak of viral RNA reflects active CDV replication.

A duplex real-time RT-PCR assay for detecting H5N1 avian influenza virus and pandemic H1N1 influenza virus

OpenAIRE

Kang, Xiao-ping; Jiang, Tao; Li, Yong-qiang; Lin, Fang; Liu, Hong; Chang, Guo-hui; Zhu, Qing-yu; Qin, E-de; Qin, Cheng-feng; Yang, Yin-hui

2010-01-01

Abstract A duplex real-time reverse transcriptase polymerase chain reaction (RT-PCR) assay was improved for simultaneous detection of highly pathogenic H5N1 avian influenza virus and pandemic H1N1 (2009) influenza virus, which is suitable for early diagnosis of influenza-like patients and for epidemiological surveillance. The sensitivity of this duplex real-time RT-PCR assay was 0.02 TCID50 (50% tissue culture infective dose) for H5N1 and 0.2 TCID50 for the pandemic H1N1, which was the same a...

Optimización en Tiempo Real utilizando la Metodología de Adaptación de Modificadores

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T. Rodríguez-Blanco

2018-03-01

Full Text Available La gestión óptima de las plantas de proceso normalmente se lleva a cabo en una capa de optimización en tiempo real (Real Time Optimization, RTO que actúa sobre la capa de control y que toma decisiones considerando objetivos económicos en base a un  modelo del proceso, normalmente estacionario. Sin embargo, dicha operación óptima no está garantizada debido a la presencia de incertidumbre entre el modelo usado para la toma de decisiones y el proceso real. Con la idea de conducir el proceso a su punto de operación óptimo usando un modelo que se sabe incierto o erróneo, surge la metodología de adaptación de modificadores (Modifier Adaptation o MA. En dicha metodología, el problema de optimización económica de la capa RTO es modificado mediante unos términos correctores, conocidos como modificadores, estimados a partir de medidas de la planta, con el objetivo de conducir el proceso a su punto de operación óptimo. El presente artículo hace una revisión de las técnicas desarrolladas hasta el momento dentro de la metodología MA analizando sus características y modos de implementación.

PCR en tiempo real para el sexaje y análisis citológico de la sinapsis del bivalente más pequeño en espermatocitos en paquiteno de Oreochromis niloticus

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Zulita Prieto

2017-01-01

Full Text Available El objetivo de la presente investigación fue dar a conocer nuevos marcadores moleculares para la PCR en tiempo real asociados a los cromosomas sexuales y el análisis de la sinapsis del bivalente más pequeño en espermatocitos en paquiteno de Oreochromis nil oticus . Se diseñaron cuatro pares de cebadores y se pusieron a prueba por PCR punto final y por PCR en tiempo real utilizando el fluorescente SYBR® Green en muestras de ADN de hembras XX, machos XY y supermachos YY. Los tamaños de los fragmentos amplificad os por PCR punto final fueron concordantes a los valores esperados y por PCR en tiempo real se demostró igual especificidad pero con ventaja en rapidez en la detección de amplificación de marcadores asociados a los cromosoma X y Y, de acuerdo con las condi ciones de la PCR establecidas. Las diferencias genéticas entre las regiones de los cromosomas X y Y demostradas con los marcadores específicos no fueron perceptibles citológicamente en los espermatocitos en paquiteno de O. niloticus XY. En base a las difer encias y homologías de las secuencias de ADN entre las accesiones KC710223 y KC710224 de los cromosomas X y Y se propone un modelo de sinapsis del bivalente XY.

Rapid detection of Enterovirus and Coxsackievirus A10 by a TaqMan based duplex one-step real time RT-PCR assay.

Science.gov (United States)

Chen, Jingfang; Zhang, Rusheng; Ou, Xinhua; Yao, Dong; Huang, Zheng; Li, Linzhi; Sun, Biancheng

2017-06-01

A TaqMan based duplex one-step real time RT-PCR (rRT-PCR) assay was developed for the rapid detection of Coxsackievirus A10 (CV-A10) and other enterovirus (EVs) in clinical samples. The assay was fully evaluated and found to be specific and sensitive. When applied in 115 clinical samples, a 100% diagnostic sensitivity in CV-A10 detection and 97.4% diagnostic sensitivity in other EVs were found. Copyright © 2017 Elsevier Ltd. All rights reserved.

Assessment of Real-Time Time-Dependent Density Functional Theory (RT-TDDFT) in Radiation Chemistry: Ionized Water Dimer.

Science.gov (United States)

Chalabala, Jan; Uhlig, Frank; Slavíček, Petr

2018-03-29

Ionization in the condensed phase and molecular clusters leads to a complicated chain of processes with coupled electron-nuclear dynamics. It is difficult to describe such dynamics with conventional nonadiabatic molecular dynamics schemes since the number of states swiftly increases as the molecular system grows. It is therefore attractive to use a direct electron and nuclear propagation such as the real-time time-dependent density functional theory (RT-TDDFT). Here we report a RT-TDDFT benchmark study on simulations of singly and doubly ionized states of a water monomer and dimer as a prototype for more complex processes in a condensed phase. We employed the RT-TDDFT based Ehrenfest molecular dynamics with a generalized gradient approximate (GGA) functional and compared it with wave-function-based surface hopping (SH) simulations. We found that the initial dynamics of a singly HOMO ionized water dimer is similar for both the RT-TDDFT/GGA and the SH simulations but leads to completely different reaction channels on a longer time scale. This failure is attributed to the self-interaction error in the GGA functionals and it can be avoided by using hybrid functionals with large fraction of exact exchange (represented here by the BHandHLYP functional). The simulations of doubly ionized states are reasonably described already at the GGA level. This suggests that the RT-TDDFT/GGA method could describe processes following the autoionization processes such as Auger emission, while its applicability to more complex processes such as intermolecular Coulombic decay remains limited.

Early diagnosis of dengue in travelers: comparison of a novel real-time RT-PCR, NS1 antigen detection and serology.

Science.gov (United States)

Huhtamo, Eili; Hasu, Essi; Uzcátegui, Nathalie Y; Erra, Elina; Nikkari, Simo; Kantele, Anu; Vapalahti, Olli; Piiparinen, Heli

2010-01-01

The increased traveling to dengue endemic regions and the numerous epidemics have led to a rise in imported dengue. The laboratory diagnosis of acute dengue requires several types of tests and often paired samples are needed for obtaining reliable results. Although several diagnostic methods are available, proper comparative data on their performance are lacking. To compare the performance of novel methods including a novel pan-DENV real-time RT-PCR and a commercially available NS1 capture-EIA in regard to IgM detection for optimizing the early diagnosis of DENV in travelers. A panel of 99 selected early phase serum samples of dengue patients was studied by real-time RT-PCR, NS1 antigen ELISA, IgM-EIA, IgG-IFA and cell culture virus isolation. The novel real-time RT-PCR was shown specific and sensitive for detection of DENV-1-4 RNA and suitable for diagnostic use. The diagnostic rate using combination of RNA and IgM detection was 99% and using NS1 and IgM detection 95.9%. The results of RNA and NS1 antigen detection disagreed in 15.5% of samples that had only RNA or NS1 antigen detected. The diagnostic rates of early samples are higher when either RNA or NS1 antigen detection is combined with IgM detection. Besides the differences in the RNA and NS1 detection assays, the observed discrepancy of results could suggest individual variation or differences in timing of these markers in patient serum. Copyright (c) 2009 Elsevier B.V. All rights reserved.

DESARROLLO DE UN SISTEMA DE CONTROL PARA LA CAPTURA Y MEDICIÓN EXPERIMENTAL DE LA EFICIENCIA Y CURVA CARACTERÍSTICA I-V EN TIEMPO REAL DE UN SISTEMA FOTOVOLTAICO UTILIZANDO LABVIEW® Y ARDUINO

Directory of Open Access Journals (Sweden)

Juan Pablo Vargas Bautista

2015-07-01

Full Text Available En el presente artículo se presenta un sistema de control para la visualización en tiempo real de datos experimentales de la curva de eficiencia y de la curva característica I-V (corriente versus voltaje de un panel fotovoltaico (FV SUNTECH-STP030-12. El sistema está compuesto de un programa desarrollado en LabView® y un circuito electrónico de captura y procesamiento de datos.  Se utilizó un microprocesador Arduino UNO R3 para la interface entre los datos del panel FV y el programa en LabView®.  Los resultados muestran que es posible utilizar microprocesadores de bajo costo con suficiente capacidad de procesamiento en tiempo real de la información obtenida de los paneles FV.

Microdroplet sandwich real-time rt-PCR for detection of pandemic and seasonal influenza subtypes.

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Stephanie L Angione

Full Text Available As demonstrated by the recent 2012/2013 flu epidemic, the continual emergence of new viral strains highlights the need for accurate medical diagnostics in multiple community settings. If rapid, robust, and sensitive diagnostics for influenza subtyping were available, it would help identify epidemics, facilitate appropriate antiviral usage, decrease inappropriate antibiotic usage, and eliminate the extra cost of unnecessary laboratory testing and treatment. Here, we describe a droplet sandwich platform that can detect influenza subtypes using real-time reverse-transcription polymerase chain reaction (rtRT-PCR. Using clinical samples collected during the 2010/11 season, we effectively differentiate between H1N1p (swine pandemic, H1N1s (seasonal, and H3N2 with an overall assay sensitivity was 96%, with 100% specificity for each subtype. Additionally, we demonstrate the ability to detect viral loads as low as 10(4 copies/mL, which is two orders of magnitude lower than viral loads in typical infected patients. This platform performs diagnostics in a miniaturized format without sacrificing any sensitivity, and can thus be easily developed into devices which are ideal for small clinics and pharmacies.

Comparison of ELISA and dual stage real time RT-PCR to differentiate Sabin like and non-Sabin like poliovirus isolates.

Science.gov (United States)

Kaundal, Nirmal; Sarkate, Purva; Prakash, Charu; Rishi, Narayan

2017-06-01

Environmental surveillance of polioviruses has been used as an important tool in monitoring circulation of wild polioviruses and/or Vaccine derived polioviruses in sewage samples. It is important to distinguish Sabin like isolates from non-Sabin like; ELISA & dual stage real time RT-PCR have been used for the same. Current study was carried out on sewage isolates to compare ELISA & RT-PCR with sequencing to distinguish Sabin like from non-Sabin like. Out of 468 sewage specimens, 91 (19.44%) were non-polio enteroviruses positive and 377 (80.56%) were polio positive by virus isolation method. A total of 488 polio virus isolates were detected by L20B and RD route which were further subjected to ELISA and RT-PCR. The results were compared with sequencing. On comparison, the specificity of ELISA was only 66.67% in spite of very low sensitivity (3.43%). The sensitivity of RT-PCR was 97.71% which makes it a good primary screening test for detection of non-Sabin like viruses. However, the specificity was only 33.33%. RT-PCR appears to be a sensitive tool for detecting non-Sabin like viruses however; the isolates which are non-Sabin like by RT-PCR may not necessarily be mutated viruses. ELISA cannot be used for differentiation of Sabin likes from non-Sabin likes due to low sensitivity.

Intra-laboratory validation of chronic bee paralysis virus quantitation using an accredited standardised real-time quantitative RT-PCR method.

Science.gov (United States)

Blanchard, Philippe; Regnault, Julie; Schurr, Frank; Dubois, Eric; Ribière, Magali

2012-03-01

Chronic bee paralysis virus (CBPV) is responsible for chronic bee paralysis, an infectious and contagious disease in adult honey bees (Apis mellifera L.). A real-time RT-PCR assay to quantitate the CBPV load is now available. To propose this assay as a reference method, it was characterised further in an intra-laboratory study during which the reliability and the repeatability of results and the performance of the assay were confirmed. The qPCR assay alone and the whole quantitation method (from sample RNA extraction to analysis) were both assessed following the ISO/IEC 17025 standard and the recent XP U47-600 standard issued by the French Standards Institute. The performance of the qPCR assay and of the overall CBPV quantitation method were validated over a 6 log range from 10(2) to 10(8) with a detection limit of 50 and 100 CBPV RNA copies, respectively, and the protocol of the real-time RT-qPCR assay for CBPV quantitation was approved by the French Accreditation Committee. Copyright © 2011 Elsevier B.V. All rights reserved.

Analysis on the arcelin expression in bruchid pest resistant wild pulses using real time RT-qPCR.

Science.gov (United States)

Sakthivelkumar, Shanmugavel; Veeramani, Velayutham; Hilda, Karuppiah; Arumugam, Munusamy; Janarthanan, Sundaram

2014-12-01

Arcelin, the antimetabolic protein from wild pulses is a known natural insecticidal molecule. Wild pulses with high arcelin content could serve as potential source to. increase the levels of insect resistance in cultivated pulse crops. In this study, arcelin (Arl) gene expression was screened in seven stored product insect pest resistant wild pulse varieties using real time RT-qPCR. Arcelin gene specific real time PCR primers were synthesized from arcelin mRNA sequence of the wild pulse variety, Lablab purpureus. The results revealed different levels of arcelin gene expression in the tested varieties. Canavalia virosa registered significantly high content indicating its suitability for utilization of arcelin gene in developing stored product insect pest resistance with other cultivated pulses.

Sistema de detección de fugas en tiempo real en presas de materiales sueltos mediante sensores distribuidos en fibra óptica

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O. Muñoz

2016-04-01

Full Text Available El presente trabajo pretende analizar el uso de fibra óptica como sensor de temperatura distribuido para la detección de posibles fugas en presas de materiales sueltos. El uso de esta técnica permite complementar los sistemas de auscultación  normalmente utilizados mejorando la monitorización de las zonas críticas de la infraestructura. Este tipo de sistema de monitorización en tiempo real ha sido implementado en dos casos reales, (presa de Soto-Terroba y recrecimiento de la presa de Yesa. Finalmente este trabajo quiere proporcionar una visión práctica sobre esta nueva técnica implementada y en particular sobre los criterios de selección de materiales y las precauciones necesarias a la hora del despliegue del elemento sensor.

Propuesta en MAC de redes de área personal (WPAN) para optimizar el tiempo de respuesta

OpenAIRE

Reggiani, Guillermo; Alimenti, Omar; Friedrich, Guillermo Rodolfo

2009-01-01

En redes inalámbricas de área personal (WPAN) como la 802.15.3, el tiempo de uso del canal es asignado por el controlador de la red (PNC) en base a las solicitudes de los dispositivos. En sistemas de tiempo real (STR), la asignación de pedidos por CAP (Contention Access Period) genera una indeterminación en el uso del canal. En cambio el mecanismo por MCTAs (Management Channel Time Allocation) es más apropiado para STR, ya que brinda una ranura de tiempo por cada dispositivo para que éste rea...

Detection, quantitation and identification of enteroviruses from surface waters and sponge tissue from the Florida Keys using real-time RT-PCR

Science.gov (United States)

Donaldson, K.A.; Griffin, Dale W.; Paul, J.H.

2002-01-01

A method was developed for the quantitative detection of pathogenic human enteroviruses from surface waters in the Florida Keys using Taqman (R) one-step Reverse transcription (RT)-PCR with the Model 7700 ABI Prism (R) Sequence Detection System. Viruses were directly extracted from unconcentrated grab samples of seawater, from seawater concentrated by vortex flow filtration using a 100kD filter and from sponge tissue. Total RNA was extracted from the samples, purified and concentrated using spin-column chromatography. A 192-196 base pair portion of the 5??? untranscribed region was amplified from these extracts. Enterovirus concentrations were estimated using real-time RT-PCR technology. Nine of 15 sample sites or 60% were positive for the presence of pathogenic human enteroviruses. Considering only near-shore sites, 69% were positive with viral concentrations ranging from 9.3viruses/ml to 83viruses/g of sponge tissue (uncorrected for extraction efficiency). Certain amplicons were selected for cloning and sequencing for identification. Three strains of waterborne enteroviruses were identified as Coxsackievirus A9, Coxsackievirus A16, and Poliovirus Sabin type 1. Time and cost efficiency of this one-step real-time RT-PCR methodology makes this an ideal technique to detect, quantitate and identify pathogenic enteroviruses in recreational waters. Copyright ?? 2002 Elsevier Science Ltd.

Detection and typing of highly pathogenic porcine reproductive and respiratory syndrome virus by multiplex real-time rt-PCR.

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Kerstin Wernike

Full Text Available Porcine reproductive and respiratory syndrome (PRRS causes economic losses in the pig industry worldwide, and PRRS viruses (PRRSV are classified into the two distinct genotypes "North American (NA, type 2" and "European (EU, type 1". In 2006, a highly pathogenic NA strain of PRRSV (HP-PRRSV, characterized by high fever as well as high morbidity and mortality, emerged in swine farms in China. Therefore, a real-time reverse transcription polymerase chain reaction (RT-qPCR assay specific for HP-PRRSV was developed and combined with type 1- and type 2-specific RT-qPCR systems. Furthermore, an internal control, based on a heterologous RNA, was successfully introduced. This final multiplex PRRSV RT-qPCR, detecting and typing PRRSV, had an analytical sensitivity of less than 200 copies per µl for the type 1-assay and 20 copies per µl for the type 2- and HP assays and a high diagnostic sensitivity. A panel of reference strains and field isolates was reliably detected and samples from an animal trial with a Chinese HP-PRRS strain were used for test validation. The new multiplex PRRSV RT-qPCR system allows for the first time the highly sensitive detection and rapid differentiation of PRRSV of both genotypes as well as the direct detection of HP-PRRSV.

Tiempo y evolución

OpenAIRE

Vargas, Esteban

2012-01-01

En este trabajo se intenta mostrar el problema del tiempo evolutivo en dos posibles concepciones. Por una parte, ya sea que la evolución se entienda como microevolución (cambio de frecuencias génicas) o macroevolución (especiación), el concepto de tiempo usado, en general, es el cronométrico, es decir, el tiempo que mide el reloj (meses, años, miles de años, etc.). Esto quiere decir que el tiempo es considerado como una variable independiente de los procesos biológicos. Sus fases temporales s...

Quantitative real-time RT-PCR and chromogenic in situ hybridization: precise methods to detect HER-2 status in breast carcinoma

International Nuclear Information System (INIS)

Rosa, Fabíola E; Silveira, Sara M; Silveira, Cássia GT; Bérgamo, Nádia A; Neto, Francisco A Moraes; Domingues, Maria AC; Soares, Fernando A; Caldeira, José RF; Rogatto, Silvia R

2009-01-01

HER-2 gene testing has become an integral part of breast cancer patient diagnosis. The most commonly used assay in the clinical setting for evaluating HER-2 status is immunohistochemistry (IHC) and fluorescence in situ hybridization (FISH). These procedures permit correlation between HER-2 expression and morphological features. However, FISH signals are labile and fade over time, making post-revision of the tumor difficult. CISH (chromogenic in situ hybridization) is an alternative procedure, with certain advantages, although still limited as a diagnostic tool in breast carcinomas. To elucidate the molecular profile of HER-2 status, mRNA and protein expression in 75 invasive breast carcinomas were analyzed by real time quantitative RT-PCR (qRT-PCR) and IHC, respectively. Amplifications were evaluated in 43 of these cases by CISH and in 11 by FISH. The concordance rate between IHC and qRT-PCR results was 78.9%, and 94.6% for qRT-PCR and CISH. Intratumoral heterogeneity of HER-2 status was identified in three cases by CISH. The results of the three procedures were compared and showed a concordance rate of 83.8%; higher discordances were observed in 0 or 1+ immunostaining cases, which showed high-level amplification (15.4%) and HER-2 transcript overexpression (20%). Moreover, 2+ immunostaining cases presented nonamplified status (50%) by CISH and HER-2 downexpression (38.5%) by qRT-PCR. In general, concordance occurred between qRT-PCR and CISH results. A high concordance was observed between CISH/qRT-PCR and FISH. Comparisons with clinicopathological data revealed a significant association between HER-2 downexpression and the involvement of less than four lymph nodes (P = 0.0350). Based on these findings, qRT-PCR was more precise and reproducible than IHC. Furthermore, CISH was revealed as an alternative and useful procedure for investigating amplifications involving the HER-2 gene

Real-time onestep RT-PCR for the detection and differentiation of European and North American types of PRRSV in boar semen

DEFF Research Database (Denmark)

Hjulsager, Charlotte Kristiane; Larsen, Lars Erik

and safe diagnostic procedure, since cDNA synthesis and PCR is performed sequentially without inbetween opening of the PCR-tubes, thus eliminating a substantial contamination risk. The aim of the present study was to validate a real-time OneStep RT-PCR assay for the simultaneous detection...

Proyección de la demanda a corto plazo basada en un modelo de demanda sensible al tiempo

OpenAIRE

Espol; Santana Villamar, Cesar Napoleon

2017-01-01

La tesis a desarrollarse pretende simplemente proporcionar un algoritmo, para proyectar la demanda de energía eléctrica a corto plazo, con gran precisión; mediante la descomposición de la carga en sus componentes físicas, desarrollando un modelo matemático para las diferentes componentes; y en especial de la componente sensible al tiempo. El modelo de proyección será probado con datos de carga y tiempo reales. Los datos de carga y tiempo corresponden a la ciudad de Guayaquil. Se prueb...

Comparison of multiplex RT-PCR and real-time HybProbe assay for serotyping of dengue virus using reference strains and clinical samples from India

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Anita Chakravarti

2016-01-01

Full Text Available Background: Dengue virus serotyping is crucial from clinical management and epidemiological point of view. Aims: To compare efficacy of two molecular detection and typing methods, namely, multiplex reverse transcription polymerase chain reaction (RT-PCR and real-time Hybprobe assay using a panel of known dilution of four reference Dengue virus strains and a panel of sera collected from clinically suspected dengue patients. Settings: This study was conducted at a tertiary-care teaching hospital in Delhi, India. Materials and Methods: Dengue serotype specific virus strains were used as prototypes for serotyping assays. Viral load was quantified by quantitative real time reverse transcription polymerase chain reaction (qRT-PCR. Acute phase serum samples were collected from 79 patients with clinically suspected Dengue fever on their first day of presentation during September-October 2012. Viral RNA from serum and cell culture supernatant was extracted. Reverse transcription was carried out. Quantitative detection of DENV RNA from reference strain culture supernatants and each of the 79 patient samples by real-time PCR was performed using light cycler Taqman master mix kit. Serotyping was done by multiplex RT-PCR assay and Hybprobe assay. Results: The multiplex RT-PCR assay, though found to be 100% specific, couldn't serotype either patient or reference strains with viral load less than 1000 RNA copies/ml. The Hybprobe assay was found to have 100% specificity and had a lower limit of serotype detection of merely 3.54 RNA copies/ml. Conclusions: HybProbe assay has an important role especially in situations where serotyping is to be performed in clinical samples with low viral load.

Detección de virus influenza A, B y subtipos A (H1N1 pdm09, A (H3N2 por múltiple RT-PCR en muestras clínicas

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Pool Marcos

Full Text Available Objetivos. Estandarizar la técnica de reacción en cadena de la polimerasa en tiempo real (RT-PCR múltiple para la detección de virus influenza A, B y tipificación de subtipos A (H1N1 pdm09, A (H3N2 en muestras clínicas. Materiales y métodos. Se analizaron 300 muestras de hisopado nasofaríngeo. Esta metodología fue estandarizada en dos pasos: la primera reacción detectó el gen de la matriz del virus de influenza A, gen de la nucleoproteína del virus influenza B y el gen GAPDH de las células huésped. La segunda reacción detectó el gen de la hemaglutinina de los subtipos A (H1N1 pandémico (pdm09 y A (H3N2. Resultados. Se identificaron 109 muestras positivas a influenza A y B, de las cuales 72 fueron positivas a influenza A (36 positivas a influenza A (H1N1 pdm09 y 36 positivos a influenza A (H3N2 y 37 muestras positivas a influenza B. 191 fueron negativas a ambos virus mediante RT-PCR en tiempo real multiplex. Se encontró una sensibilidad y especificidad del 100% al analizar los resultados de ambas reacciones. El límite de detección viral fue del rango de 7 a 9 copias/µL por virus. Los resultados no mostraron ninguna reacción cruzada con otros virus tales como adenovirus, virus sincitial respiratorio, parainfluenza (1,2 y 3, metapneumovirus, subtipos A (H1N1 estacional, A (H5N2 y VIH. Conclusiones. La RT-PCR múltiple demostró ser una prueba muy sensible y específica para la detección de virus influenza A, B y subtipos A (H1N1, H3N2 y su uso puede ser conveniente en brotes estacionales.

Development of a real-time RT-PCR assay for the simultaneous identification, quantitation and differentiation of avian metapneumovirus subtypes A and B.

Science.gov (United States)

Cecchinato, Mattia; Lupini, Caterina; Munoz Pogoreltseva, Olga Svetlana; Listorti, Valeria; Mondin, Alessandra; Drigo, Michele; Catelli, Elena

2013-01-01

In recent years, special attention has been paid to real-time polymerase chain reaction (PCR) for avian metapneumovirus (AMPV) diagnosis, due to its numerous advantages over classical PCR. A new multiplex quantitative real-time reverse transcription-PCR (qRT-PCR) with molecular beacon probe assay, designed to target the SH gene, was developed. The test was evaluated in terms of specificity, sensitivity and repeatability, and compared with conventional RT nested-PCR based on the G gene. All of the AMPV subtype A and B strains tested were amplified and specifically detected while no amplification occurred with other non-target bird respiratory pathogens. The detection limit of the assay was 10(-0.41) median infectious dose/ml and 10(1.15) median infectious dose/ml when the AMPV-B strain IT/Ty/B/Vr240/87 and the AMPV-A strain IT/Ty/A/259-01/03 were used, respectively, as templates. In all cases, the amplification efficiency was approximately 2 and the error values were 0.9375) between crossing point values and virus quantities, making the assay herein designed reliable for quantification. When the newly developed qRT-PCR was compared with a conventional RT nested-PCR, it showed greater sensitivity with RNA extracted from both positive controls and from experimentally infected birds. This assay can be effectively used for the detection, identification, differentiation and quantitation of AMPV subtype A or subtype B to assist in disease diagnosis and to carry out rapid surveillance with high levels of sensitivity and specificity.

Supervisory system for real time monitoring of transient thermal stresses in turbines rotors; Sistema supervisorio para el monitoreo en tiempo real de esfuerzos termicos transitorios en rotores de turbinas

Energy Technology Data Exchange (ETDEWEB)

Urquiza Beltran, Gustavo; Rios Miranda, Edmundo; Venegas Guzman, Ricardo; Alvarez Garcia, Gabriela [Instituto de Investigaciones Electricas, Cuernavaca (Mexico)

1991-12-31

This article presents a supervisory system that, as its main functions, assists the operator on base of the thermal stresses, monitoring in real time the high pressure (HP) and intermediate pressure rotors (IP) of a steam turbine during the start, shut down and/or sudden load changes. The system is based on a thermal model uni-dimensional integrated to the SIMPER (Information System for the Predictive Maintenance of Rotating Equipment), tested in a 300 MW unit of Comision Federal de Electricidad (CFE). [Espanol] En este articulo se presenta un sistema supervisorio que, como funciones principales, asiste al operador con base en el monitoreo de esfuerzos termicos en tiempo real en los rotores de presion alta (PA) y presion intermedia (PI) de una turbina de vapor durante un arranque, paro y/o variaciones bruscas de carga. El sistema esta basado en un modelo termico unidimensional integrado al SIMPER (sistema informatico para el mantenimiento predictivo de equipo rotatorio), experimentado en una unidad de 300 MW de la Comision Federal de Electricidad (CFE).

Supervisory system for real time monitoring of transient thermal stresses in turbines rotors; Sistema supervisorio para el monitoreo en tiempo real de esfuerzos termicos transitorios en rotores de turbinas

Energy Technology Data Exchange (ETDEWEB)

Urquiza Beltran, Gustavo; Rios Miranda, Edmundo; Venegas Guzman, Ricardo; Alvarez Garcia, Gabriela [Instituto de Investigaciones Electricas, Cuernavaca (Mexico)

1992-12-31

This article presents a supervisory system that, as its main functions, assists the operator on base of the thermal stresses, monitoring in real time the high pressure (HP) and intermediate pressure rotors (IP) of a steam turbine during the start, shut down and/or sudden load changes. The system is based on a thermal model uni-dimensional integrated to the SIMPER (Information System for the Predictive Maintenance of Rotating Equipment), tested in a 300 MW unit of Comision Federal de Electricidad (CFE). [Espanol] En este articulo se presenta un sistema supervisorio que, como funciones principales, asiste al operador con base en el monitoreo de esfuerzos termicos en tiempo real en los rotores de presion alta (PA) y presion intermedia (PI) de una turbina de vapor durante un arranque, paro y/o variaciones bruscas de carga. El sistema esta basado en un modelo termico unidimensional integrado al SIMPER (sistema informatico para el mantenimiento predictivo de equipo rotatorio), experimentado en una unidad de 300 MW de la Comision Federal de Electricidad (CFE).

Quantitative real-time RT-PCR and chromogenic in situ hybridization: precise methods to detect HER-2 status in breast carcinoma

Directory of Open Access Journals (Sweden)

Soares Fernando A

2009-03-01

Full Text Available Abstract Background HER-2 gene testing has become an integral part of breast cancer patient diagnosis. The most commonly used assay in the clinical setting for evaluating HER-2 status is immunohistochemistry (IHC and fluorescence in situ hybridization (FISH. These procedures permit correlation between HER-2 expression and morphological features. However, FISH signals are labile and fade over time, making post-revision of the tumor difficult. CISH (chromogenic in situ hybridization is an alternative procedure, with certain advantages, although still limited as a diagnostic tool in breast carcinomas. Methods To elucidate the molecular profile of HER-2 status, mRNA and protein expression in 75 invasive breast carcinomas were analyzed by real time quantitative RT-PCR (qRT-PCR and IHC, respectively. Amplifications were evaluated in 43 of these cases by CISH and in 11 by FISH. Results The concordance rate between IHC and qRT-PCR results was 78.9%, and 94.6% for qRT-PCR and CISH. Intratumoral heterogeneity of HER-2 status was identified in three cases by CISH. The results of the three procedures were compared and showed a concordance rate of 83.8%; higher discordances were observed in 0 or 1+ immunostaining cases, which showed high-level amplification (15.4% and HER-2 transcript overexpression (20%. Moreover, 2+ immunostaining cases presented nonamplified status (50% by CISH and HER-2 downexpression (38.5% by qRT-PCR. In general, concordance occurred between qRT-PCR and CISH results. A high concordance was observed between CISH/qRT-PCR and FISH. Comparisons with clinicopathological data revealed a significant association between HER-2 downexpression and the involvement of less than four lymph nodes (P = 0.0350. Conclusion Based on these findings, qRT-PCR was more precise and reproducible than IHC. Furthermore, CISH was revealed as an alternative and useful procedure for investigating amplifications involving the HER-2 gene.

Laboratory validation of two real-time RT-PCR methods with 5'-tailed primers for an enhanced detection of foot-and-mouth disease virus.

Science.gov (United States)

Vandenbussche, Frank; Lefebvre, David J; De Leeuw, Ilse; Van Borm, Steven; De Clercq, Kris

2017-08-01

The 3D and 5UTR real-time RT-PCR assays (RT-qPCR) from Callahan et al. (2002) and Reid et al. (2002) are commonly used reference methods for the detection of foot-and-mouth disease virus (FMDV). For an optimal detection of FMDV in clinical samples, it is advised to use both assays simultaneously (King et al., 2006). Recently, Vandenbussche et al. (2016) showed that the addition of 5'-tails to the FMDV-specific primers enhances the detection of FMDV in both the 3D and the 5UTR RT-qPCR assay. To validate the 3D and 5UTR RT-qPCR assays with 5'-tailed primers for diagnostic purposes, both assays were run in parallel in a triplex one-step RT-qPCR protocol with beta-actin as an internal control and synthetic RNA as an external control. We obtained low limits of detection and high linearity's, high repeatability and reproducibility, near 100% analytical specificity and >99% diagnostic accuracy for both assays. It was concluded that the 3D and 5UTR RT-qPCR assays with 5'-tailed primers are particularly suited for the detection of FMDV as well as to exclude the presence of FMDV. Copyright © 2017 Elsevier B.V. All rights reserved.

Los juegos de Borges con el tiempo

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Paulína Šišmišová

2012-12-01

Full Text Available La preocupación por el tiempo es una de las constantes de la obra del escritor argentino Jorge Luis Borges. Los «juegos con el tiempo» forman parte indispensable de sus estrategias narrativas, tal como lo documenta también su célebre cuento «Borges y yo». En nuestra contribución nos dedicaremos a estudiar la problemática del tiempo en Borges bajo dos aspectos: el tiempo como recurso de configuración del texto narrativo y el tiempo como categoria metafísica.

Exploring valid reference genes for quantitative real - time rt - pce studies of hydrogenperoxide signaling in arabidopsis

International Nuclear Information System (INIS)

Zhou, H.; Han, B.; Xie, Y.; Zhang, J.; Shen, W.

2015-01-01

Hydrogen peroxide (H/sub 2/O/sub 2/ ) acts as a signaling molecule modulating the expression of various genes in plants. However, the reference gene(s) used for gene expression analysis of H/sub 2/O/sub 2/ signaling is still arbitrary. A reliable result obtained by quantitative real-time RT-PCR (RT-qPCR) highly depends on accurate transcript normalization using stably expressed reference genes, whereas the inaccurate normalization could easily lead to the false conclusions. In this report, by using geNorm and NormFinder algorithms, 12 candidate reference genes were evaluated and compared in root and shoot tissues of Arabidopsis upon different doses of H/sub 2/O/sub 2/. The results revealed that, in our experimental conditions, three novel reference genes (TIP41-like, UKN, and UBC21) were identified and validated as suitable reference genes for RT-qPCR normalization in both root and shoot tissues under oxidative stress. This conclusion was further confirmed by publicly available microarray data of methyl viologen and drought stress. In comparison with a single reference gene (EF-1a), the expression pattern of ZAT12 modulated by H/sub 2/O/sub 2/, when using TIP41-like, UKN, and UBC21 as multiple reference gene(s), was similar with the previous reports by using northern blotting. Thus, we proposed that these three reference genes might be good candidates for other researchers to include in their reference gene validation in gene expression studies under H/sub 2/O/sub 2/ related oxidative stress. (author)

Historia como interrupción del tiempo

OpenAIRE

Aguilera Pedrosa, Antonio

2006-01-01

Frente a un concepto de presente como transición y a otro como repetición, Benjamín elabora uno donde el tiempo se detiene, clave para entender su concepto de historia. La interpretación habitual que separa tiempo histórico de tiempo físico quiere facilitar la comprensión de Benjamin, pero al precio de olvidar ciertas paradojas: la misma detención, la reversibilidad del tiempo, la redención del pasado entero, la invocación de la teología, la posibilidad de un cambio respecto al tiempo natural...

Enhanced control of dorsolateral prefrontal cortex neurophysiology with real-time functional magnetic resonance imaging (rt-fMRI) neurofeedback training and working memory practice.

Science.gov (United States)

Sherwood, Matthew S; Kane, Jessica H; Weisend, Michael P; Parker, Jason G

2016-01-01

Real-time functional magnetic resonance imaging (rt-fMRI) neurofeedback can be used to train localized, conscious regulation of blood oxygen level-dependent (BOLD) signals. As a therapeutic technique, rt-fMRI neurofeedback reduces the symptoms of a variety of neurologic disorders. To date, few studies have investigated the use of self-regulation training using rt-fMRI neurofeedback to enhance cognitive performance. This work investigates the utility of rt-fMRI neurofeedback as a tool to enhance human cognition by training healthy individuals to consciously control activity in the left dorsolateral prefrontal cortex (DLPFC). A cohort of 18 healthy participants in the experimental group underwent rt-fMRI neurofeedback from the left DLPFC in five training sessions across two weeks while 7 participants in the control group underwent similar training outside the MRI and without rt-fMRI neurofeedback. Working memory (WM) performance was evaluated on two testing days separated by the five rt-fMRI neurofeedback sessions using two computerized tests. We investigated the ability to control the BOLD signal across training sessions and WM performance across the two testing days. The group with rt-fMRI neurofeedback demonstrated a significant increase in the ability to self-regulate the BOLD signal in the left DLPFC across sessions. WM performance showed differential improvement between testing days one and two across the groups with the highest increases observed in the rt-fMRI neurofeedback group. These results provide evidence that individuals can quickly gain the ability to consciously control the left DLPFC, and this training results in improvements of WM performance beyond that of training alone. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Selection of reference genes for quantitative real-time RT-PCR studies in tomato fruit of the genotype MT-Rg1

Directory of Open Access Journals (Sweden)

Karla L. González-Aguilera

2016-09-01

Full Text Available Quantitative real-time RT-PCR (qRT-PCR has become one of the most widely used methods for accurate quantification of gene expression. Since there are no universal reference genes for normalization, the optimal strategy to normalize raw qRT-PCR data is to perform an initial comparison of a set of independent reference genes to assess the most stable ones in each biological model. Normalization of a qRT-PCR experiment helps to ensure that the results are both statistically significant and biologically meaningful. Tomato is the model of choice to study fleshy fruit development. The miniature tomato (Solanum lycopersicum L. cultivar Micro-Tom (MT is considered a model system for tomato genetics and functional genomics. A new genotype, containing the Rg1 allele, improves tomato in vitro regeneration. In this work, we evaluated the expression stability of four tomato reference genes, namely CAC, SAND, Expressed and ACTIN2. We showed that the genes CAC and Exp are the best reference genes of the four we tested during fruit development in the MT-Rg1 genotype. Furthermore, we validated the reference genes by showing that the expression profiles of the transcription factors FRUITFULL1 (FUL1 and APETALA2c (AP2c during fruit development are comparable to previous reports using other tomato cultivars.

Evaluation of RIDA®GENE norovirus GI/GII real time RT-PCR using stool specimens collected from children and adults with acute gastroenteritis.

Science.gov (United States)

Kanwar, N; Hassan, F; Barclay, L; Langley, C; Vinjé, J; Bryant, P W; George, K St; Mosher, L; Matthews-Greer, J M; Rocha, M A; Beenhouwer, D O; Harrison, C J; Moffatt, M; Shastri, N; Selvarangan, R

2018-04-10

Norovirus is the leading cause of epidemic and sporadic acute gastroenteritis (AGE) in the United States. Widespread prevalence necessitates implementation of accurate norovirus detection assays in clinical diagnostic laboratories. To evaluate RIDA ® GENE norovirus GI/GII real-time RT-PCR assay (RGN RT-PCR) using stool samples from patients with sporadic AGE. Patients between 14 days to 101 years of age with symptoms of AGE were enrolled prospectively at four sites across the United States during 2014-2015. Stool specimens were screened for the presence of norovirus RNA by the RGN RT-PCR assay. Results were compared with a reference method that included conventional RT-PCR and sequencing of a partial region of the 5'end of the norovirus ORF2 gene. A total of 259 (36.0%) of 719 specimens tested positive for norovirus by the reference method. The RGN RT-PCR assay detected norovirus in 244 (94%) of these 259 norovirus positive specimens. The sensitivity and specificity (95% confidence interval) of the RGN RT-PCR assay for detecting norovirus genogroup (G) I was 82.8% (63.5-93.5) and 99.1% (98.0-99.6) and for GII was 94.8% (90.8-97.2) and 98.6% (96.9-99.4), respectively. Seven specimens tested positive by the RGN-RT PCR that were negative by the reference method. The fifteen false negative samples were typed as GII.4 Sydney, GII.13, GI.3, GI.5, GI.2, GII.1, and GII.3 in the reference method. The RGN RT-PCR assay had a high sensitivity and specificity for the detection of norovirus in stool specimens from patients with sporadic AGE. Copyright © 2018. Published by Elsevier B.V.

Exploring physical and chemical factors influencing the properties of recombinant prion protein and the real-time quaking-induced conversion (RT-QuIC) assay.

Science.gov (United States)

Cheng, Keding; Sloan, Angela; Avery, Kristen M; Coulthart, Michael; Carpenter, Michael; Knox, J David

2014-01-01

Real-time quaking-induced conversion (RT-QuIC), a highly specific and sensitive assay able to detect low levels of the disease-inducing isoform of the prion protein (PrP(d)) in brain tissue biopsies and cerebral spinal fluid, has great potential to become a method for diagnosing prion disease ante mortem. In order to standardize the assay method for routine analysis, an understanding of how physical and chemical factors affect the stability of the recombinant prion protein (rPrP) substrate and the RT-QuIC assay's sensitivity, specificity, and reproducibility is required. In this study, using sporadic Creutzfeldt-Jakob Disease brain homogenate to seed the reactions and an in vitro-expressed recombinant prion protein, hamster rPrP, as the substrate, the following factors affecting the RT-QuIC assay were examined: salt and substrate concentrations, substrate storage, and pH. Results demonstrated that both the generation of the quality and quantities of rPrP substrate critical to the reaction, as well as the RT-QuIC reaction itself required strict adherence to specific physical and chemical conditions. Once optimized, the RT-QuIC assay was confirmed to be a very specific and sensitive assay method for sCJD detection. Findings in this study indicate that further optimization and standardization of RT-QuIC assay is required before it can be adopted as a routine diagnostic test.

Clasificación en tiempo real de materias primas mediante un sensor espectroscópico de imagen y técnicas lineales de procesado de datos

OpenAIRE

García Allende, Pilar Beatriz; Conde Portilla, Olga María; Mirapeix Serrano, Jesús María; Cubillas de Cos, Ana María; López Higuera, José Miguel

2007-01-01

RESUMEN: En este artículo se presenta un nuevo método de procesado de imágenes hiperespectrales capturadas mediante un sensor espectroscópico de imagen. Basado en un algoritmo de clasificación lineal, permite mejorar las restricciones de tiempo real que planteaba un sistema de clasificación de materia prima diseñado previamente. El procesado de datos consta de dos bloques: compresión de características e interpretación de las mismas. La compresión se realiza empleando Análisis de Componentes ...

Description of execution time dynamics for a set of concurrent real-time tasks

Directory of Open Access Journals (Sweden)

Pedro Guevara López

2011-01-01

Full Text Available Un Sistema en Tiempo Real (STR implantado en una computadora digital, interactúa con el mundo físico a través del acondicionamiento de variables (sensores, actuadores convertidores Analógico/Digital A/D y Digital/ Analógico D/A y procesa sus peticiones mediante tareas en tiempo real (Ji: i¿Z+. Cada Ji está formada por un conjunto de instancias {ji,k: i, k¿Z+, i es el índice de la tarea, k es el índice de la instancia} con al menos tres restricciones temporales: tiempo de arribo, tiempo de ejecución y plazo (Li,k, Ci,k, Di,k. En este sentido, es importante proponer un modelo para reconstruir el comportamiento de los tiempos de ejecución Ci,k. El modelo propuesto es un ARMA con un estimador de parámetros basado en la variable instrumental. Los tiempos de ejecución fueron medidos experimentalmente en QNX Neutrino 6.5 utilizando un procesador Intel Core i7 de 2.66 GHz. Se presentan los antecedentes teóricos del modelado de tareas en tiempo real, las mediciones de tiempo de ejecución, el modelo de tiempos de ejecución, el estimador de parámetros con variable instrumental, la experimentación y los resultados.

Multiplex real-time RT-PCR assay for bovine viral diarrhea virus type 1, type 2 and HoBi-like pestivirus.

Science.gov (United States)

Mari, Viviana; Losurdo, Michele; Lucente, Maria Stella; Lorusso, Eleonora; Elia, Gabriella; Martella, Vito; Patruno, Giovanni; Buonavoglia, Domenico; Decaro, Nicola

2016-03-01

HoBi-like pestiviruses are emerging pestiviruses that infect cattle causing clinical forms overlapping to those induced by bovine viral diarrhea virus (BVDV) 1 and 2. As a consequence of their widespread distribution reported in recent years, molecular tools for rapid discrimination among pestiviruses infecting cattle are needed. The aim of the present study was to develop a multiplex real-time RT-PCR assay, based on the TaqMan technology, for the rapid and unambiguous characterisation of all bovine pestiviruses, including the emerging HoBi-like strains. The assay was found to be sensitive, specific and repeatable, ensuring detection of as few as 10(0)-10(1) viral RNA copies. No cross-reactions between different pestiviral species were observed even in samples artificially contaminated with more than one pestivirus. Analysis of field samples tested positive for BVDV-1, BVDV-2 or HoBi-like virus by a nested PCR protocol revealed that the developed TaqMan assay had equal or higher sensitivity and was able to discriminate correctly the viral species in all tested samples, whereas a real-time RT-PCR assay previously developed for HoBi-like pestivirus detection showed cross-reactivity with few high-titre BVDV-2 samples. Copyright © 2015 Elsevier B.V. All rights reserved.

Cross-platform evaluation of commercial real-time SYBR green RT-PCR kits for sensitive and rapid detection of European bat Lyssavirus type 1.

Science.gov (United States)

Picard-Meyer, Evelyne; Peytavin de Garam, Carine; Schereffer, Jean Luc; Marchal, Clotilde; Robardet, Emmanuelle; Cliquet, Florence

2015-01-01

This study evaluates the performance of five two-step SYBR Green RT-qPCR kits and five one-step SYBR Green qRT-PCR kits using real-time PCR assays. Two real-time thermocyclers showing different throughput capacities were used. The analysed performance evaluation criteria included the generation of standard curve, reaction efficiency, analytical sensitivity, intra- and interassay repeatability as well as the costs and the practicability of kits, and thermocycling times. We found that the optimised one-step PCR assays had a higher detection sensitivity than the optimised two-step assays regardless of the machine used, while no difference was detected in reaction efficiency, R (2) values, and intra- and interreproducibility between the two methods. The limit of detection at the 95% confidence level varied between 15 to 981 copies/µL and 41 to 171 for one-step kits and two-step kits, respectively. Of the ten kits tested, the most efficient kit was the Quantitect SYBR Green qRT-PCR with a limit of detection at 95% of confidence of 20 and 22 copies/µL on the thermocyclers Rotor gene Q MDx and MX3005P, respectively. The study demonstrated the pivotal influence of the thermocycler on PCR performance for the detection of rabies RNA, as well as that of the master mixes.

Cross-Platform Evaluation of Commercial Real-Time SYBR Green RT-PCR Kits for Sensitive and Rapid Detection of European Bat Lyssavirus Type 1

Directory of Open Access Journals (Sweden)

Evelyne Picard-Meyer

2015-01-01

Full Text Available This study evaluates the performance of five two-step SYBR Green RT-qPCR kits and five one-step SYBR Green qRT-PCR kits using real-time PCR assays. Two real-time thermocyclers showing different throughput capacities were used. The analysed performance evaluation criteria included the generation of standard curve, reaction efficiency, analytical sensitivity, intra- and interassay repeatability as well as the costs and the practicability of kits, and thermocycling times. We found that the optimised one-step PCR assays had a higher detection sensitivity than the optimised two-step assays regardless of the machine used, while no difference was detected in reaction efficiency, R2 values, and intra- and interreproducibility between the two methods. The limit of detection at the 95% confidence level varied between 15 to 981 copies/µL and 41 to 171 for one-step kits and two-step kits, respectively. Of the ten kits tested, the most efficient kit was the Quantitect SYBR Green qRT-PCR with a limit of detection at 95% of confidence of 20 and 22 copies/µL on the thermocyclers Rotor gene Q MDx and MX3005P, respectively. The study demonstrated the pivotal influence of the thermocycler on PCR performance for the detection of rabies RNA, as well as that of the master mixes.

Development of a real-time RT-PCR assay based on primer-probe energy transfer for the detection of all serotypes of bluetongue virus

DEFF Research Database (Denmark)

Leblanc, N; Rasmussen, Thomas Bruun; Fernandez, J

2010-01-01

A real-time RT-PCR assay based on the primer–probe energy transfer (PriProET) was developed to detect all 24 serotypes of bluetongue virus (BTV). BTV causes serious disease, primarily in sheep, but in other ruminants as well. A distinguishing characteristic of the assay is its tolerance toward...

Development of a novel quantitative real-time RT-PCR assay for the simultaneous detection of all serotypes of Foot-and-mouth disease virus

DEFF Research Database (Denmark)

Rasmussen, Thomas Bruun; Uttenthal, Åse; de Stricker, K.

2003-01-01

Foot-and-mouth disease virus (FMDV) spreads extremely fast and the need for rapid and robust diagnostic virus detection systems was obvious during the recent European epidemic. Using a novel real-time RT-PCR system based on primer-probe energy transfer (PriProET) we present here an assay targeting...

Development of single step RT-PCR for detection of Kyasanur forest disease virus from clinical samples

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Gouri Chaubal

2018-02-01

Discussion and conclusion: The previously published sensitive real time RT-PCR assay requires higher cost in terms of reagents and machine setup and technical expertise has been the primary reason for development of this assay. A single step RT-PCR is relatively easy to perform and more cost effective than real time RT-PCR in smaller setups in the absence of Biosafety Level-3 facility. This study reports the development and optimization of single step RT-PCR assay which is more sensitive and less time-consuming than nested RT-PCR and cost effective for rapid diagnosis of KFD viral RNA.

The SPoRT-WRF: Evaluating the Impact of NASA Datasets on Convective Forecasts

Science.gov (United States)

Zavodsky, Bradley; Kozlowski, Danielle; Case, Jonathan; Molthan, Andrew

2012-01-01

Short-term Prediction Research and Transition (SPoRT) seeks to improve short-term, regional weather forecasts using unique NASA products and capabilities SPoRT has developed a unique, real-time configuration of the NASA Unified Weather Research and Forecasting (WRF)WRF (ARW) that integrates all SPoRT modeling research data: (1) 2-km SPoRT Sea Surface Temperature (SST) Composite, (2) 3-km LIS with 1-km Greenness Vegetation Fraction (GVFs) (3) 45-km AIRS retrieved profiles. Transitioned this real-time forecast to NOAA's Hazardous Weather Testbed (HWT) as deterministic model at Experimental Forecast Program (EFP). Feedback from forecasters/participants and internal evaluation of SPoRT-WRF shows a cool, dry bias that appears to suppress convection likely related to methodology for assimilation of AIRS profiles Version 2 of the SPoRT-WRF will premier at the 2012 EFP and include NASA physics, cycling data assimilation methodology, better coverage of precipitation forcing, and new GVFs

Development and evaluation of tailored specific real-time RT-PCR assays for detection of foot-and-mouth disease virus serotypes circulating in East Africa

DEFF Research Database (Denmark)

Bachanek-Bankowska, Katarzyna; Mero, Herieth R.; Wadsworth, Jemma

2016-01-01

Rapid, reliable and accurate diagnostic methods provide essential support to programmes that monitor and control foot-and-mouth disease (FMD). While pan-specific molecular tests for FMD virus (FMDV) detection are well established and widely used in endemic and FMD-free countries, current serotyping...... methods mainly rely either on antigen detection ELISAs or nucleotide sequencing approaches. This report describes the development of a panel of serotype-specific real-time RT-PCR assays (rRT-PCR) tailored to detect FMDV lineages currently circulating in East Africa. These assays target sequences within...... sequencing. Samples (n = 71) representing serotype A (topotype AFRICA, lineage G-I), serotype O (topotypes EA-2 and EA-4), serotype SAT 1 (topotype I (NWZ)) and serotype SAT2 (topotype IV) were correctly identified with these rRT-PCR assays. Furthermore, FMDV RNA from samples that did not contain infectious...

Plataforma de un sistema embebido para el control y monitoreo en tiempo real aplicado a biodigestores para la óptima producción de biogás

OpenAIRE

Siadén Paiva, Dany Manuel Eduardo

2017-01-01

El objetivo de la tesis es evaluar el diseño y construcción de una plataforma de sistema embebido para el control y monitoreo en tiempo real aplicado a diferentes prototipos de biodigestores a escala piloto ubicados en las instalaciones de la Universidad de Piura. Para ello, se inicia un estudio del proceso de digestión anaerobia con el fin de determinar las variables influyentes en el proceso. Luego, se realiza un análisis de los biodigestores instalados en el país para conocer la tecnología...

Reverse transcriptase-quantitative polymerase chain reaction (RT ...

African Journals Online (AJOL)

zino

2014-02-05

Feb 5, 2014 ... ecological studies - A review ... The objective of this review is to assess the importance of RT-qPCR in soil related ... phenol extraction step with heat inactivation of the added .... Real time polymerase chain reaction (PCR).

Detección y cuantificación del Potato mop-top virus (PMTV en Colombia mediante qRT-PCR

Directory of Open Access Journals (Sweden)

Nevar García Bastidas

2013-04-01

Full Text Available El Potato mop-top virus (PMTV es uno de los virus re-emergentes en cultivos de papa en Colombia. Es transmitido por Spongospora subterranea, el agente causal de la sarna polvosa. La detección del PMTV presenta dificultades debido a su distribución irregular en las plantas, bajo título y movimiento sistémico como ARN desnudo. Con el fin de ampliar el rango de herramientas disponibles para detectar el PMTV en los programas de certificación de tubérculo-semilla, en este estudio se evaluó la prueba de RT-PCR en tiempo real (qRT-PCR en dos pasos: con los cebadores PMTV-1948F/PMTV-2017R y la sonda Taqman® PMTV-1970, dirigidos al gen CP-RT del ARN2 viral. Se construyó una curva estándar a partir de la transcripción in vitro de un fragmento de 1513 pb de este gen. Posteriormente, se evaluó la utilidad de la técnica a partir de tres tipos de muestras: plantas señuelo de Nicotiana benthamiana y Solanum phureja inoculadas con quistosoros de Sss, raíces de papa con síntomas de sarna polvosa del municipio de La Unión (Antioquia y tubérculos-semilla. Mediante qRT-PCR fue posible detectar el virus en 11 de las 20 muestras de raíz de plantas señuelo, mientras que 14 de las 15 muestras de raíces de papa resultaron positivas, estimándose una concentración entre 4.72 x 10(11 y 7.60 x 10(13 partículas virales/µl. Adicionalmente, en el ensayo de tubérculo-semilla se determinó la presencia del PMTV en una de las 16 muestras. Estos resultados indican la viabilidad de utilizar rutinariamente la técnica de qRT-PCR para la detección de PMTV en Colombia.

Tiempo de sustentabilidad Time of sustainability

Directory of Open Access Journals (Sweden)

Enrique Leff

2000-06-01

Full Text Available El desarrollo sustentable, como todo desarrollo, se despliega en el tiempo. Mas este proceso no ocurre en los tiempos de la evolución biológica y del progreso económico. No es el tiempo cronológico en el que se suceden inercias y se enlazan las tendencias de la realidad existente. La sustentabilidad es la marca del límite de la racionalidad unidimensional de la modernidad, de una crisis de civilización que abre nuevos horizontes y evoca otros sentidos del tiempo. En la sustentabilidad convergen los tiempos multifacéticos de diversos procesos materiales y simbólicos -geológicos, biológicos, económicos, tecnológicos, culturales- y se enlazan las diferentes racionalidades que configuran la complejidad ambiental. Los tiempos de la sustentabilidad se forjan en formas del ser que se proyectan del pasado hacia el futuro arraigando en nuevas identidades. En esa perspectiva se esboza una visión fenomenológica de inspiración heideggeriana sobre los tiempos de sustentabilidad.Sustainable development, like any deveolopment, happens in time. But this process does not occur in the time of biological evolution or economic growth. It is not within cronological time that inercies happen and tendencies of existing reality take place. Sustentability is in the edge of the modern unidimensional rationality, of a civilization in crisis which opens new horizons and evokes different senses of time. Sustainability contains different times of diverse material and symbolic processes -geological, biological, economic, technological, cultural- and gathers different rationalities which shape environmental complexity. Sustainability times are forged by forms that are projected from the past to the future, resulting in new identities. This perspective inspires a heideggerian phenomenologic view on the times of sustainability.

Data acquisition and real time signal processing of plasma diagnostics on ASDEX Upgrade using LabVIEW RT

Energy Technology Data Exchange (ETDEWEB)

Giannone, L.; Scarabosio, A.; Eich, T.; Fuchs, C.; Haas, G.; Kallenbach, A.; McCarthy, P.; Mlynek, A.; Neu, G.; Reich, M.; Schneider, W.; Schuhbeck, K.; Treutterer, W.; Zehetbauer, T.; Asdex, Upgrade Team [Max-Planck-Institut fur Plasmaphysik, Garching (Germany); Cerna, M.; Wenzel, L.; Concezzi, S.; Debelle, T.; Marker, B.; Munroe, M.; Petersen, N.; Vrancic, A. [National Instruments Corporation, Austin (United States); Marquardt, M.; Sachtleben, J. [Max-Planck-Institute for Plasmaphysics, Teilinstitut Greifswald (Germany)

2009-07-01

There are 5 plasma diagnostics using LabVIEW RT for data acquisition and control on ASDEX Upgrade. These diagnostics are integrated into the VxWorks control system by the exchange of XML files. Real time communication to the control system is possible by Ethernet using UDP or by reflective memory using a dedicated fiber optic cable. The bolometer and manometer data acquisition systems are described, they use FPGA cards to process raw data in real time. The absorbed power of the bolometer foil is calculated in real time on the FPGA. The radiation peaking factor is also calculated in real time and is used for feedback control of the discharge. The manometer uses 8 analog inputs and 4 analog outputs of a FPGA card to provide PID control of the electron current emission of a filament. The electron and ion currents are acquired at 750 kHz and the neutral gas pressures of 4 manometers are calculated in real time on a FPGA card at up to 10 kHz. The magnetic equilibrium diagnostic acquires 80 magnetic probe and flux loop signals at 10 kHz. The 95 plasma position and shape parameters and magnetic flux surfaces are calculated in real time. The function parameterization algorithm used to calculate the magnetic flux surfaces in real time requires the multiplication of a matrix of dimension 2691*231 with a vector of length 231. This matrix and vector multiplication is solved through parallel computing on a dual quad-core computer and the execution time of this operation is reduced by a factor of four compared to calculation on a single core. This document is composed of an abstract followed by a poster. (authors)

Tiempo del indio, tiempo de Dios, tiempo de nadie (El tiempo, factor en la evangelización del Perú)

OpenAIRE

Mandianes Castro, Manuel

1988-01-01

Estudio del problema de la inculturación del Evangelio y de la aculturación de los nativos para lo que me serviré de una serie de haces de imágenes sobre el tiempo, entresacadas de "Doctrina christiana" y "Catecismo para instrucción de Indios" y Constituciones del Sínodo diocesano de Lima de 1613.

LabVIEW Real-Time

CERN Multimedia

CERN. Geneva; Flockhart, Ronald Bruce; Seppey, P

2003-01-01

With LabVIEW Real-Time, you can choose from a variety of RT Series hardware. Add a real-time data acquisition component into a larger measurement and automation system or create a single stand-alone real-time solution with data acquisition, signal conditioning, motion control, RS-232, GPIB instrumentation, and Ethernet connectivity. With the various hardware options, you can create a system to meet your precise needs today, while the modularity of the system means you can add to the solution as your system requirements grow. If you are interested in Reliable and Deterministic systems for Measurement and Automation, you will profit from this seminar. Agenda: Real-Time Overview LabVIEW RT Hardware Platforms - Linux on PXI Programming with LabVIEW RT Real-Time Operating Systems concepts Timing Applications Data Transfer

Table 1. Primer sequences used for real-time qRT-PCR analysis of ...

Indian Academy of Sciences (India)

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TGTCCCAGTAAACCGCTC. GAATCCAGCACGATACCAGT. Figure 1. Expression analysis of candidate CsActin and CsFbox genes by qRT-PCR in response to 4°C treatment. The y-axis indicates Cq values, and error bars represent standard deviations of the mean values of four replicates. Rt, roots; St, stems; Le, leaves; Fl ...

Development and validation of sensitive real-time RT-PCR assay for broad detection of rabies virus.

Science.gov (United States)

Faye, Martin; Dacheux, Laurent; Weidmann, Manfred; Diop, Sylvie Audrey; Loucoubar, Cheikh; Bourhy, Hervé; Sall, Amadou Alpha; Faye, Ousmane

2017-05-01

Rabies virus (RABV) remains one of the most important global zoonotic pathogens. RABV causes rabies, an acute encephalomyelitis associated with a high rate of mortality in humans and animals and affecting different parts of the world, particularly in Asia and Africa. Confirmation of rabies diagnosis relies on laboratory diagnosis, in which molecular techniques such as detection of viral RNA by reverse transcription polymerase chain reaction (RT-PCR) are increasingly being used. In this study, two real-time quantitative RT-PCR assays were developed for large-spectrum detection of RABV, with a focus on African isolates. The primer and probe sets were targeted highly conserved regions of the nucleoprotein (N) and polymerase (L) genes. The results indicated the absence of non-specific amplification and cross-reaction with a range of other viruses belonging to the same taxonomic family, i.e. Rhabdoviridae, as well as negative brain tissues from various host species. Analytical sensitivity ranged between 100 to 10 standard RNA copies detected per reaction for N-gene and L-gene assays, respectively. Effective detection and high sensitivity of these assays on African isolates showed that they can be successfully applied in general research and used in diagnostic process and epizootic surveillance in Africa using a double-check strategy. Copyright © 2017 Elsevier B.V. All rights reserved.

Development of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland.

LENUS (Irish Health Repository)

Menton, John F

2007-01-01

BACKGROUND: Noroviruses are the most common cause of non-bacterial gastroenteritis. Improved detection methods have seen a large increase in the number of human NoV genotypes in the last ten years. The objective of this study was to develop a fast method to detect, quantify and genotype positive NoV samples from Irish hospitals. RESULTS: A real-time RT-PCR assay and a Reverse Line Blot Hybridisation assay were developed based on the ORF1-ORF2 region. The sensitivity and reactivity of the two assays used was validated using a reference stool panel containing 14 NoV genotypes. The assays were then used to investigate two outbreaks of gastroenteritis in two Irish hospitals. 56 samples were screened for NoV using a real-time RT-PCR assay and 26 samples were found to be positive. Genotyping of these positive samples found that all positives belonged to the GII\\/4 variant of NoV. CONCLUSION: The combination of the Real-time assay and the reverse line blot hybridisation assay provided a fast and accurate method to investigate a NoV associated outbreak. It was concluded that the predominant genotype circulating in these Irish hospitals was GII\\/4 which has been associated with the majority of NoV outbreaks worldwide. The assays developed in this study are useful tools for investigating NoV infection.

Comparison of real-time SYBR green dengue assay with real-time taqman RT-PCR dengue assay and the conventional nested PCR for diagnosis of primary and secondary dengue infection

Science.gov (United States)

Paudel, Damodar; Jarman, Richard; Limkittikul, Kriengsak; Klungthong, Chonticha; Chamnanchanunt, Supat; Nisalak, Ananda; Gibbons, Robert; Chokejindachai, Watcharee

2011-01-01

Background: Dengue fever and dengue hemorrhagic fever are caused by dengue virus. Dengue infection remains a burning problem of many countries. To diagnose acute dengue in the early phase we improve the low cost, rapid SYBR green real time assay and compared the sensitivity and specificity with real time Taqman® assay and conventional nested PCR assay. Aims: To develop low cost, rapid and reliable real time SYBR green diagnostic dengue assay and compare with Taqman real-time assay and conventional nested PCR (modified Lanciotti). Materials and Methods: Eight cultured virus strains were diluted in tenth dilution down to undetectable level by the PCR to optimize the primer, temperature (annealing, and extension and to detect the limit of detection of the assay. Hundred and ninety three ELISA and PCR proved dengue clinical samples were tested with real time SYBR® Green assay, real time Taqman® assay to compare the sensitivity and specificity. Results: Sensitivity and specificity of real time SYBR® green dengue assay (84% and 66%, respectively) was almost comparable to those (81% and 74%) of Taqman real time PCR dengue assay. Real time SYBR® green RT-PCR was equally sensitive in primary and secondary infection while real time Taqman was less sensitive in the secondary infection. Sensitivity of real time Taqman on DENV3 (87%) was equal to SYBR green real time PCR dengue assay. Conclusion: We developed low cost rapid diagnostic SYBR green dengue assay. Further study is needed to make duplex primer assay for the serotyping of dengue virus. PMID:22363089

Redes Inalámbricas para el Monitoreo y Control en tiempo real de Sistemas de Calentamiento de agua con Colectores Solares

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Alfredo Pino Escalona

2011-05-01

Full Text Available Normal 0 21 false false false MicrosoftInternetExplorer4 Tecnología inalámbrica ZigBee para monitorear en tiempo real un sistema de calentamiento de agua  instalado en el hotel Las América en Santiago de Cuba con energía solar. Se analiza el flujo tecnológico de la instalación y las principales características del estándar IEEE 802.15.4 y la pila desarrollada por Microchip. El diseño del sistema incluye dos módulos y se controla la temperatura del agua para las habitaciones  manipulando el caudal que recircula entre los calentadores solares y el tanque de almacenamiento. El diseño e implementación del controlador se realiza utilizando microcontroladores PICs  y un sistema supervisorio  programado en LabWindowsTM/CVITM 9.0

Evaluation of FTA cards as a laboratory and field sampling device for the detection of foot-and-mouth disease virus and serotyping by RT-PCR and real-time RT-PCR.

Science.gov (United States)

Muthukrishnan, Madhanmohan; Singanallur, Nagendrakumar B; Ralla, Kumar; Villuppanoor, Srinivasan A

2008-08-01

Foot-and-mouth disease virus (FMDV) samples transported to the laboratory from far and inaccessible areas for serodiagnosis pose a major problem in a tropical country like India, where there is maximum temperature fluctuation. Inadequate storage methods lead to spoilage of FMDV samples collected from clinically positive animals in the field. Such samples are declared as non-typeable by the typing laboratories with the consequent loss of valuable epidemiological data. The present study evaluated the usefulness of FTA Classic Cards for the collection, shipment, storage and identification of the FMDV genome by RT-PCR and real-time RT-PCR. The stability of the viral RNA, the absence of infectivity and ease of processing the sample for molecular methods make the FTA cards a useful option for transport of FMDV genome for identification and serotyping. The method can be used routinely for FMDV research as it is economical and the cards can be transported easily in envelopes by regular document transport methods. Live virus cannot be isolated from samples collected in FTA cards, which is a limitation. This property can be viewed as an advantage as it limits the risk of transmission of live virus.

El tiempo y los tiempos en la obra de Santa Teresa de Jesús: un acercamiento narratológico

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Tomaž Šmid

2012-12-01

Full Text Available Aunque el estilo de los textos teresianos está marcado por el tono de la conversación oral esto no excluye su preocupación por la forma. El lenguaje se orienta en la narración hacia procesos que tienen su fundamento en la temporalidad. El tiempo se convierte así en una de las dimensiones fundamentales de cualquier narración. En el artículo nos interesa el tiempo en su doble dimensión: como componente de la historia y su manifestación al nivel del discurso. Analizamos primero lo que atañe al acto de narrar la historia en la obra de Santa Teresa (si en su mayoría es ulterior, anterior, simultáneo o intercalado y después las relaciones y las discordancias que se producen en su obra entre el tiempo del relato y el tiempo de la historia, utilizando para ello tres parámetros: el orden, la duración y la frecuencia (Genette, 1972. Contrastando el tiempo de la historia y el tiempo del discurso en la obra de Santa Teresa constatamos la agilidad de su estilo literario y su capacidad para organizar una sintaxis narrativa.

Real-time RT-PCR analysis of mRNA decay: half-life of Beta-actin mRNA in human leukemia CCRF-CEM and Nalm-6 cell lines

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Barredo Julio C

2002-03-01

Full Text Available Abstract Background We describe an alternative method to determine mRNA half-life (t1/2 based on the Real-Time RT-PCR procedure. This approach was evaluated by using the β-actin gene as a reference molecule for measuring of mRNA stability. Results Human leukemia Nalm-6 and CCRF-CEM cells were treated with various concentrations of Actinomycin D to block transcription and aliquots were removed periodically. Total RNA was isolated and quantified using the RiboGreen® fluorescent dye with the VersaFluor Fluorometer System. One μg of total RNA was reverse transcribed and used as template for the amplification of a region of the β-actin gene (231 bp. To generate the standard curve, serial ten-fold dilutions of the pBactin-231 vector containing the cDNA amplified fragment were employed, β-actin mRNAs were quantified by Real-Time RT-PCR using the SYBR® Green I fluorogenic dye and data analyzed using the iCycle iQ system software. Using this method, the β-actin mRNA exhibited a half-life of 6.6 h and 13.5 h in Nalm-6 and CCRF-CEM cells, respectively. The t1/2 value obtained for Nalm-6 is comparable to those estimated from Northern blot studies, using normal human leukocytes (5.5 h. Conclusions We have developed a rapid, sensitive, and reliable method based on Real-Time RT-PCR for measuring mRNA half-life. Our results confirm that β-actin mRNA half-life can be affected by the cellular growth rate.

Avian metapneumovirus RT-nested-PCR: a novel false positive reducing inactivated control virus with potential applications to other RNA viruses and real time methods.

Science.gov (United States)

Falchieri, Marco; Brown, Paul A; Catelli, Elena; Naylor, Clive J

2012-12-01

Using reverse genetics, an avian metapneumovirus (AMPV) was modified for use as a positive control for validating all stages of a popular established RT-nested PCR, used in the detection of the two major AMPV subtypes (A and B). Resultant amplicons were of increased size and clearly distinguishable from those arising from unmodified virus, thus allowing false positive bands, due to control virus contamination of test samples, to be identified readily. Absorption of the control virus onto filter paper and subsequent microwave irradiation removed all infectivity while its function as an efficient RT-nested-PCR template was unaffected. Identical amplicons were produced after storage for one year. The modified virus is likely to have application as an internal standard as well as in real time methods. Additions to AMPV of RNA from other RNA viruses, including hazardous examples such HIV and influenza, are likely to yield similar safe RT-PCR controls. Copyright © 2012 Elsevier B.V. All rights reserved.

Development and evaluation of tailored specific real-time RT-PCR assays for detection of foot-and-mouth disease virus serotypes circulating in East Africa.

Science.gov (United States)

Bachanek-Bankowska, Katarzyna; Mero, Herieth R; Wadsworth, Jemma; Mioulet, Valerie; Sallu, Raphael; Belsham, Graham J; Kasanga, Christopher J; Knowles, Nick J; King, Donald P

2016-11-01

Rapid, reliable and accurate diagnostic methods provide essential support to programmes that monitor and control foot-and-mouth disease (FMD). While pan-specific molecular tests for FMD virus (FMDV) detection are well established and widely used in endemic and FMD-free countries, current serotyping methods mainly rely either on antigen detection ELISAs or nucleotide sequencing approaches. This report describes the development of a panel of serotype-specific real-time RT-PCR assays (rRT-PCR) tailored to detect FMDV lineages currently circulating in East Africa. These assays target sequences within the VP1-coding region that share high intra-lineage identity, but do not cross-react with FMD viruses from other serotypes that circulate in the region. These serotype-specific assays operate with the same thermal profile as the pan-diagnostic tests making it possible to run them in parallel to produce C T values comparable to the pan-diagnostic test detecting the 3D-coding region. These assays were evaluated alongside the established pan-specific molecular test using field samples and virus isolates collected from Tanzania, Kenya and Ethiopia that had been previously characterised by nucleotide sequencing. Samples (n=71) representing serotype A (topotype AFRICA, lineage G-I), serotype O (topotypes EA-2 and EA-4), serotype SAT 1 (topotype I (NWZ)) and serotype SAT2 (topotype IV) were correctly identified with these rRT-PCR assays. Furthermore, FMDV RNA from samples that did not contain infectious virus could still be serotyped using these assays. These serotype-specific real-time RT-PCR assays can detect and characterise FMDVs currently circulating in East Africa and hence improve disease control in this region. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Novel Molecular Beacon Probe-Based Real-Time RT-PCR Assay for Diagnosis of Crimean-Congo Hemorrhagic Fever Encountered in India

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Aman Kamboj

2014-01-01

Full Text Available Crimean-Congo hemorrhagic fever (CCHF is an emerging zoonotic disease in India and requires immediate detection of infection both for preventing further transmission and for controlling the infection. The present study describes development, optimization, and evaluation of a novel molecular beacon-based real-time RT-PCR assay for rapid, sensitive, and specific diagnosis of Crimean-Congo hemorrhagic fever virus (CCHFV. The developed assay was found to be a better alternative to the reported TaqMan assay for routine diagnosis of CCHF.

Evaluation of 793/B-like and Mass-like vaccine strain kinetics in experimental and field conditions by real-time RT-PCR quantification.

Science.gov (United States)

Tucciarone, C M; Franzo, G; Berto, G; Drigo, M; Ramon, G; Koutoulis, K C; Catelli, E; Cecchinato, M

2018-01-01

Infectious bronchitis virus (IBV) is a great economic burden both for productive losses and costs of the control strategies. Many different vaccination protocols are applied in the same region and even in consecutive cycles on the same farm in order to find the perfect balance between costs and benefits. In Northern Italy, the usual second vaccination is more and more often moved up to the chick's first d of life. The second strain administration together with the common Mass priming by spray at the hatchery allows saving money and time and reducing animal stress. The present work compared the different vaccine strains (Mass-like or B48, and 1/96) kinetics both in field conditions and in a 21-day-long experimental trial in broilers, monitoring the viral replication by upper respiratory tract swabbing and vaccine specific real time reverse transcription PCR (RT-PCR) quantification. In both field and experimental conditions, titers for all the vaccines showed an increasing trend in the first 2 wk and then a decrease, though still remaining detectable during the whole monitored period. IBV field strain and avian Metapneumovirus (aMPV) presence also was also investigated by RT-PCR and sequencing, and by multiplex real-time RT-PCR, respectively, revealing a consistency in the pathogen introduction timing at around 30 d, in correspondence with the vaccine titer's main decrease. These findings suggest the need for an accurate knowledge of live vaccine kinetics, whose replication can compete with the other pathogen one, providing additional protection to be added to what is conferred by the adaptive immune response. © 2017 Poultry Science Association Inc.

TODOS LOS TIEMPO / All times

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Juan José López de la Cruz

2010-05-01

Full Text Available RESUMEN La intervención sobre la arquitectura pasada no es más que un asunto concreto de una concepción universal de los procesos de transformación que incumben a todo el proyecto de arquitectura. Podríamos pensar que la acción arquitectónica es siempre una alteración de nuestro mundo ya existente, por lo que proyectar no es sino repensar una y otra vez sobre él, un fabuloso intento de transformar continuamente la realidad, construida o figurada, para acomodarla a lo variable de nuestro pensamiento en constante cambio. Este modo de aproximarnos al proyecto de arquitectura como alteración de una realidad continua, permanente antes y después del proyecto, observa el tiempo como materia de investigación y reflexión, el proyecto se convierte entonces en el Aleph capaz de reunir todos los instantes reales o imaginados que atañen a un lugar, entendiendo la arquitectura como una superposición de momentos entretejidos donde, a través de estrategias de alteración, podemos rescatar tiempos pasados y proyectar instantes futuros como quien recorre senderos que se bifurcan y se reencuentran, pudiendo reemprender caminos descartados en su día o descubriendo convergencias que han de producirse en un mañana a través del proyecto. La reunión de ayeres, presentes y futuros que propicia el proyecto de arquitectura permite incorporar a nuestro ámbito cultural realidades consideradas aparentemente agotadas, al tiempo que nos incita a imaginar nuestras intervenciones como un estadio más de una realidad permanente que volverá a ser ineludiblemente alterada en tiempos venideros. Este viaje pendular a través del tiempo del proyecto de arquitectura, induce a entender la degradación y la obsolescencia como parte del ciclo vital pero no siendo necesariamente el fin de éste, sino un momento intermedio a partir del cual explorar nuevas posibilidades formalizadas a través de la metamorfosis de la materia y los espacios degradados. Simult

Conventional and real time RT-PCR assays for the detection and differentiation of variant rabbit hemorrhagic disease virus (RHDVb) and its recombinants.

Science.gov (United States)

Dalton, K P; Arnal, J L; Benito, A A; Chacón, G; Martín Alonso, J M; Parra, F

2018-01-01

Since its emergence, variant RHDV (RHDVb/RHDV2) has spread throughout the Iberian Peninsula aided by the apparent lack of cross protection provided by classic (genogroup 1; G1) strain derived vaccines. In addition to RHDVb, full-length genome sequencing of RHDV strains has recently revealed the circulation of recombinant viruses on the Iberian Peninsula. These recombinant viruses contain the RHDVb structural protein encoding sequences and the non-structural coding regions of either pathogenic RHDV-G1 strains or non-pathogenic (np) rabbit caliciviruses. The aim of the work was twofold: firstly to validate a diagnostic real time RT-PCR developed in 2012 for the detection of RHDVb strains and secondly, to design a conventional RT-PCR for the differentiation of RHDVb strains from RHDVb recombinants by subsequent sequencing of the amplicon. Copyright © 2017 Elsevier B.V. All rights reserved.

Uso de la metodología GAIA para modelar el comportamiento de personajes en un juego de estrategia en tiempo real

Directory of Open Access Journals (Sweden)

Norman Muñoz

2010-01-01

Full Text Available Los juegos modernos en su permanente búsqueda por capturar más la atención de sus jugadores, requieren de técnicas de Inteligencia Artificial que les permita a los personajes asumir comportamientos más cercanos o parecidos a la realidad. Para lograr esto, existen muchas técnicas que se pueden utilizar, pero en los últimos años el uso de agentes inteligentes ha tomado gran importancia, ya que las propiedades de los personajes encajan perfectamente con la definición de dicha técnica. En este artículo, se presentan los principales resultados de investigación y la forma como se usó la metodología GAIA para el modelamiento del comportamiento de los personajes en un juego de estrategia de tiempo real llamado Independencia (basado en la Revolución de los Comuneros de la Independencia de Colombia.

Rapid detection and subtyping of European swine influenza viruses in porcine clinical samples by haemagglutinin- and neuraminidase-specific tetra- and triplex real-time RT-PCRs.

Science.gov (United States)

Henritzi, Dinah; Zhao, Na; Starick, Elke; Simon, Gaelle; Krog, Jesper S; Larsen, Lars Erik; Reid, Scott M; Brown, Ian H; Chiapponi, Chiara; Foni, Emanuela; Wacheck, Silke; Schmid, Peter; Beer, Martin; Hoffmann, Bernd; Harder, Timm C

2016-11-01

A diversifying pool of mammalian-adapted influenza A viruses (IAV) with largely unknown zoonotic potential is maintained in domestic swine populations worldwide. The most recent human influenza pandemic in 2009 was caused by a virus with genes originating from IAV isolated from swine. Swine influenza viruses (SIV) are widespread in European domestic pig populations and evolve dynamically. Knowledge regarding occurrence, spread and evolution of potentially zoonotic SIV in Europe is poorly understood. Efficient SIV surveillance programmes depend on sensitive and specific diagnostic methods which allow for cost-effective large-scale analysis. New SIV haemagglutinin (HA) and neuraminidase (NA) subtype- and lineage-specific multiplex real-time RT-PCRs (RT-qPCR) have been developed and validated with reference virus isolates and clinical samples. A diagnostic algorithm is proposed for the combined detection in clinical samples and subtyping of SIV strains currently circulating in Europe that is based on a generic, M-gene-specific influenza A virus RT-qPCR. In a second step, positive samples are examined by tetraplex HA- and triplex NA-specific RT-qPCRs to differentiate the porcine subtypes H1, H3, N1 and N2. Within the HA subtype H1, lineages "av" (European avian-derived), "hu" (European human-derived) and "pdm" (human pandemic A/H1N1, 2009) are distinguished by RT-qPCRs, and within the NA subtype N1, lineage "pdm" is differentiated. An RT-PCR amplicon Sanger sequencing method of small fragments of the HA and NA genes is also proposed to safeguard against failure of multiplex RT-qPCR subtyping. These new multiplex RT-qPCR assays provide adequate tools for sustained SIV monitoring programmes in Europe. © 2016 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd.

Identification of Dobrava, Hantaan, Seoul, and Puumala viruses by one-step real-time RT-PCR.

Science.gov (United States)

Aitichou, Mohamed; Saleh, Sharron S; McElroy, Anita K; Schmaljohn, C; Ibrahim, M Sofi

2005-03-01

We developed four assays for specifically identifying Dobrava (DOB), Hantaan (HTN), Puumala (PUU), and Seoul (SEO) viruses. The assays are based on the real-time one-step reverse transcriptase polymerase chain reaction (RT-PCR) with the small segment used as the target sequence. The detection limits of DOB, HTN, PUU, and SEO assays were 25, 25, 25, and 12.5 plaque-forming units, respectively. The assays were evaluated in blinded experiments, each with 100 samples that contained Andes, Black Creek Canal, Crimean-Congo hemorrhagic fever, Rift Valley fever and Sin Nombre viruses in addition to DOB, HTN, PUU and SEO viruses. The sensitivity levels of the DOB, HTN, PUU, and SEO assays were 98%, 96%, 92% and 94%, respectively. The specificity of DOB, HTN and SEO assays was 100% and the specificity of the PUU assay was 98%. Because of the high levels of sensitivity, specificity, and reproducibility, we believe that these assays can be useful for diagnosing and differentiating these four Old-World hantaviruses.

Identification of normalization factors for quantitative real-time RT-PCR analysis of gene expression in Pacific abalone Haliotis discus hannai

Science.gov (United States)

Qiu, Reng; Sun, Boguang; Fang, Shasha; Sun, Li; Liu, Xiao

2013-03-01

Quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) is widely used in studies of gene expression. In most of these studies, housekeeping genes are used as internal references without validation. To identify appropriate reference genes for qRT-PCR in Pacific abalone Haliotis discus hannai, we examined the transcription stability of six housekeeping genes in abalone tissues in the presence and absence of bacterial infection. For this purpose, abalone were infected with the bacterial pathogen Vibrio anguillarum for 12 h and 48 h. The mRNA levels of the housekeeping genes in five tissues (digestive glands, foot muscle, gill, hemocyte, and mantle) were determined by qRT-PCR. The PCR data was subsequently analyzed with the geNorm and NormFinder algorithms. The results show that in the absence of bacterial infection, elongation factor-1-alpha and beta-actin were the most stably expressed genes in all tissues, and thus are suitable as cross-tissue type normalization factors. However, we did not identify any universal reference genes post infection because the most stable genes varied between tissue types. Furthermore, for most tissues, the optimal reference genes identified by both algorithms at 12 h and 48 h post-infection differed. These results indicate that bacterial infection induced significant changes in the expression of abalone housekeeping genes in a manner that is dependent on tissue type and duration of infection. As a result, different normalization factors must be used for different tissues at different infection points.

Demonstration of a very inexpensive, turbidimetric, real-time, RT-LAMP detection platform using shrimp Laem-Singh virus (LSNV as a model.

Directory of Open Access Journals (Sweden)

Narong Arunrut

Full Text Available Rapid and accurate detection of pathogens under field laboratory conditions is necessary for effective control of veterinary pathogens. Here we describe a prototype, portable, pathogen detection device developed for single tube, real-time, reverse transcription, loop-mediated isothermal amplification (RT-LAMP using Laem-Singh virus (LSNV as a model. LSNV is an RNA virus and a component cause of growth retardation in black tiger shrimp. We chose its RNA-dependent RNA polymerase (RdRp gene as the target for our tests. The basis for detection was measurement of turbidity arising from formation of a white, insoluble magnesium pyrophosphate precipitate byproduct upon amplification of the RdRp target sequence from 100 ng template RNA extracted from shrimp. The measurement device consisted of a heating block to maintain constant temperature in the RT-LAMP reaction for 8 Eppindorf sample tubes, a light-emitting diode (LED light source providing red light emission at 650 nm wavelength to pass through sample tubes, a light dependent resistance (LDR photo-detector and a software program to report turbidity events and could potentially be marketed for under US$3000. The device was connected to a computer to display real-time results in a variety of formats. The optimized protocol for LSNV detection consisted of incubation of the sample tubes at 65 °C for 1 h during which turbidity was continuously measured, and quantitative results could be obtained by reaction time measurement. The sensitivity of detection was comparable to that of conventional nested RT-PCR and there was no cross reaction with other common shrimp viruses. The device was used for quantitative measurement of relative copy numbers of LSNV RdRp in 8 shrimp tissues and they were found to be highest in the gills followed in order by the lymphoid organ and hemolymph (p ≤ 0.05. This platform can be easily adapted for detection of other pathogens under field laboratory settings.

Duración y tiempo humano.

OpenAIRE

González-Umeres, L. (Luz)

2002-01-01

Este trabajo presenta dos visiones del tiempo humano: las de Bergson y Polo. La propuesta bergsoniana está fechada en París, 1888, en un ambiente mecanicista al cual se enfrenta, recuperando el tiempo psicológico. La propuesta de Polo iniciada a mediados del siglo XX va más allá del nivel psicológico: se adentra en el ámbito de los trascendentales personales.

REFLEXIONES ACERCA DEL VIAJE EN EL TIEMPO

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LUIS CARLOS PALLARES

2011-12-01

Full Text Available No es de extrañar, el viaje en el tiempo siempre se ha considerado imposible. Después de todo, Newton creía que el tiempo era como una flecha; una vez disparada, se eleva en línea recta, sin desviarse. Un segundo en la tierra fue un segundo en Marte. Relojes dispersos por todo el universo funcionan a la misma velocidad. Einstein nos dio una imagen mucho más radical. De acuerdo con Einstein, el tiempo era más como un río, que serpentea alrededor de estrellas y galaxias, acelerando y desacelerando al pasar cerca de cuerpos masivos.

Development of a novel real-time RT-PCR assay to detect Seneca Valley virus-1 associated with emerging cases of vesicular disease in pigs.

Science.gov (United States)

Fowler, Veronica L; Ransburgh, Russell H; Poulsen, Elizabeth G; Wadsworth, Jemma; King, Donald P; Mioulet, Valerie; Knowles, Nick J; Williamson, Susanna; Liu, Xuming; Anderson, Gary A; Fang, Ying; Bai, Jianfa

2017-01-01

Seneca Valley virus 1 (SVV-1) can cause vesicular disease that is clinically indistinguishable from foot-and-mouth disease, vesicular stomatitis and swine vesicular disease. SVV-1-associated disease has been identified in pigs in several countries, namely USA, Canada, Brazil and China. Diagnostic tests are required to reliably detect this emerging virus, and this report describes the development and evaluation of a novel real-time (r) reverse-transcription (RT) PCR assay (rRT-PCR), targeting the viral polymerase gene (3D) of SVV-1. This new assay detected all historical and contemporary SVV-1 isolates examined (n=8), while no cross-reactivity was observed with nucleic acid templates prepared from other vesicular disease viruses or common swine pathogens. The analytical sensitivity of the rRT-PCR was 0.79 TCID 50 /ml and the limit of detection was equivalent using two different rRT-PCR master-mixes. The performance of the test was further evaluated using pig nasal (n=25) and rectal swab samples (n=25), where concordant results compared to virus sequencing were generated for 43/50 samples. The availability of this assay, will enable laboratories to rapidly detect SVV-1 in cases of vesicular disease in pigs, negated for notifiable diseases, and could enable existing knowledge gaps to be investigated surrounding the natural epidemiology of SVV-1. Copyright © 2016 Elsevier B.V. All rights reserved.

STAR-RT: Visual attention for real-time video game playing

OpenAIRE

Kotseruba, Iuliia; Tsotsos, John K.

2017-01-01

In this paper we present STAR-RT - the first working prototype of Selective Tuning Attention Reference (STAR) model and Cognitive Programs (CPs). The Selective Tuning (ST) model received substantial support through psychological and neurophysiological experiments. The STAR framework expands ST and applies it to practical visual tasks. In order to do so, similarly to many cognitive architectures, STAR combines the visual hierarchy (based on ST) with the executive controller, working and short-...

Epistolario para matar el tiempo

OpenAIRE

Salguero Jaramillo, Daniel Santiago

2014-01-01

Aquí me pongo en la tarea de intentar renunciar al tiempo tal y como lo conocemos. En esta narrativa estoy de pelea con las cronometrías y me sumerjo en la búsqueda de un tiempo propio, biológico, subjetivo, que no se mide en fracciones exactas, sino que depende de estados de ánimo, de la improductividad, del compartir con amigos y del cuidado de mi hogar y mi familia. Se trata de una puesta en escena - instalación dónde voy en estaciones jugando a quebrar mi relación con el ti...

Ocio, tiempo libre y empleo

Directory of Open Access Journals (Sweden)

Luis Fernando Jiménez Guzmán

2010-11-01

Full Text Available La propuesta de la Modernidad pretende que del trabajo, la sociedad derive el bienestar y la vida feliz. El trabajo informado como empleo proporciona seguridad, opciones, posibilidades, valores, bienes, riqueza, felicidad. Una visión bien distinta a la de la Grecia Clásica, inspiradora de la democracia de Occidente, que hace poner en duda la paradoja moderna del trabajo y del tiempo libre bajo todas sus institucionalizaciones, unas generadas culturalmente por las sociedades avanzadas, otras provenientes de la tradición lúdica heredada por el siglo de la Revolución Industrial (turismo, deporte, vacaciones, fiestas, carnavales, actividades de tiempo libre, ocio. Cabe entonces preguntarse si en los inicios de la nueva era postmoderna, de la que somos protagonistas, ocurre que el trabajo y el tiempo libre vienen generando un nuevo sentido, en donde ya no aparecen como irreconciliables opuestos, ni con tajante relación de subordinación. Lo cierto es que hoy, un buen sector del pensamiento sobre la lúdica se inclina por afirmar que se está produciendo una revolución/evolución del trabajo, del empleo y del tiempo libre que los relaciona de modo distinto, acercándolos al punto de compartir entre sí nuevas y cambiantes visiones. Este texto hace parte de esa actualidad del pensamiento. Sostiene que parece haberse superado la simple apuesta teórica de cambio en la tríada binomio trabajo/ empleo/tiempo libre, pues se aprecia un efectivo cambio de rumbo al concretarse una nueva visión de felicidad y de uso del tiempo libre, ya no ligada exclusivamente con la satisfacción de las necesidades materiales, ya no amparada en el binomio histórico esclavo/amo, ya no producto exclusivo del trabajo en su visión de antaño, ya no ansiosa de excesos y banalidades, y a la vez, se aprecia el inicio del cambio hacia un trabajo que ya no es empleo privativo de la libertad, que se llena de lúdica, dejando de ser único imperativo de la vida. La Felicidad

Rt-Space: A Real-Time Stochastically-Provisioned Adaptive Container Environment

Science.gov (United States)

2017-08-04

Real-Time Systems (ECRTS) Conference Location: Toulouse, France Paper Title: Multiprocessor Real-Time Locking Protocols for Replicated Resources...Conference Location: Lille, France Paper Title: A Contention-Sensitive Fine-Grained Locking Protocol for Multiprocessor Real-Time Systems Publication...On the Soft Real-Time Optimality of Global EDF on Multiprocessors: From Identical to Uniform Heterogeneous Publication Type: Conference Paper or

Correlation of immune activation with HIV-1 RNA levels assayed by real-time RT-PCR in HIV-1 Subtype C infected patients in Northern India

Science.gov (United States)

Agarwal, Atima; Sankaran, Sumathi; Vajpayee, Madhu; Sreenivas, V; Seth, Pradeep; Dandekar, Satya

2014-01-01

Background Assays with specificity and cost effectiveness are needed for the measurement of HIV-1 burden to monitor disease progression or response to anti-retroviral therapy (ART) in HIV-1 subtype C infected patients. Objectives The objective of this study was to develop and validate an affordable; one step Real-Time RT-PCR assay with high specificity and sensitivity to measure plasma HIV-1 loads in HIV-1 subtype C infected patients. Results We developed an RT-PCR assay to detect and quantitate plasma HIV-1 levels in HIV-1 subtype C infected patients. An inverse correlation between plasma viral loads (PVL) and CD4+ T-cell numbers was detected at all CDC stages. Significant correlations were found between CD8+ T-cell activation and PVL, as well as with the clinical and immunological status of the patients. Conclusions The RT-PCR assay provides a sensitive method to measure PVL in HIV-1 subtype C infected patients. Viral loads correlated with immune activation and can be used to monitor HIV care in India. PMID:17962068

Calibración de cámaras de tiempo de vuelo: Ajuste adaptativo del tiempo de integración y análisis de la frecuencia de modulación

Directory of Open Access Journals (Sweden)

P. Gil

2013-10-01

Full Text Available Resumen: La percepción de profundidad se hace imprescindible en muchas tareas de manipulación, control visual y navegación de robots. Las cámaras de tiempo de vuelo (ToF: Time of Flight generan imágenes de rango que proporcionan medidas de profundidad en tiempo real. No obstante, el parámetro distancia que calculan estas cámaras es fuertemente dependiente del tiempo de integración que se configura en el sensor y de la frecuencia de modulación empleada por el sistema de iluminación que integran. En este artículo, se presenta una metodología para el ajuste adaptativo del tiempo de integración y un análisis experimental del comportamiento de una cámara ToF cuando se modifica la frecuencia de modulación. Este método ha sido probado con éxito en algoritmos de control visual con arquitectura ‘eye-in-hand’ donde el sistema sensorial está compuesto por una cámara ToF. Además, la misma metodología puede ser aplicada en otros escenarios de trabajo. Abstract: The depth perception is essential in many manipulation tasks, visual inspection and robot navigation. The cameras of Time of Flight (TOF generate range images which provide depth measurements in real time. However, the distance parameter computed from these cameras is strongly dependent on the integration time set for the sensor and the frequency of modulation used by the integrated lighting system. In this paper, a methodology for automatic setting of integration time and an experimental analysis of ToF camera behavior adjusting its modulation frequency is presented. This method has been successfully tested on visual servoing algorithms with architecture ‘eye-in-hand’ in which the sensory system consists of a ToF camera, in addition this methodology can be applied to other workspaces and scenarios. Palabras clave: Tiempo de vuelo, calibración, imagen de rango, percepción robótica, cámaras 3D, Keywords

Modelling Dynamic Topologies via Extensions of VDM-RT

DEFF Research Database (Denmark)

Nielsen, Claus Ballegård

Only a few formal methods include descriptions of the network topology that the modelled system is deployed onto. In VDM Real-Time (VDM-RT) this has been enabled for distributed systems that have a static structure. However, when modelling dynamic systems this fixed topology becomes an issue....... Systems with highly distributed and alternating relationships cannot be expressed correctly in a static model. This document describes how VDM-RT can be extended with new language constructs to enable the description of dynamic reconfiguration of the network topology during the runtime execution...... of a model. The extension is developed on the basis of a case study involving a dynamic system that has a constant changing system topology. With a basis in the case study a model is developed that uses the static version of VDM-RT in order to reveal the limitations of the language. The case study...

El hysteron/proteron del tiempo

OpenAIRE

Diana María Acevedo Zapata

2015-01-01

El pasaje de la Física (218b21-219a) ha llevado a postular un concepto de tiempo determinado por las condiciones perceptivas de la psyche. Se muestra cómo las condiciones de percepción son un punto de partida en la investigación: lo que es primero y más cercano a los sentidos y más conocido para los seres humanos. El punto de llegada es la conexión necesaria entre la existencia del tiempo y la del cambio. La percepción del cambio de los durmientes de Cerdeña permite determinar los elementos q...

Rapid detection and subtyping of European swine influenza viruses in porcine clinical samples by haemagglutinin- and neuraminidase-specific tetra- and triplex real-time RT-PCRs

DEFF Research Database (Denmark)

Henritzi, Dinah; Zhao, Na; Starick, Elke

2016-01-01

diagnostic methods which allow for cost-effective large-scale analysis. Methods New SIV haemagglutinin (HA) and neuraminidase (NA) subtype- and lineage-specific multiplex real-time RT-PCRs (RT-qPCR) have been developed and validated with reference virus isolates and clinical samples. Results A diagnostic....... Swine influenza viruses (SIV) are widespread in European domestic pig populations and evolve dynamically. Knowledge regarding occurrence, spread and evolution of potentially zoonotic SIV in Europe is poorly understood. Objectives Efficient SIV surveillance programmes depend on sensitive and specific......Background A diversifying pool of mammalian-adapted influenza A viruses (IAV) with largely unknown zoonotic potential is maintained in domestic swine populations worldwide. The most recent human influenza pandemic in 2009 was caused by a virus with genes originating from IAV isolated from swine...

El espacio y el tiempo en W. F. Flórez

OpenAIRE

Mandianes Castro, Manuel

1990-01-01

En las novelas de W. F. Flórez, como en la vida real de las aldeas gallegas, el espacio tiene muchos niveles: "lareira", aldea, parroquia, ciudad, Castilla, América, "fraga" y el subterráneo maravilloso, y el tiempo tiene cualidades: olor, sabor. Una lectura atenta de estas dos novelas demuestra que la oralidad forma parte importante de la narración; que el autor es, por lo mismo, en buena medida, un auténtico trasmisor de la tradición y que, por lo tanto, los etnólogos y antropólogos han de ...

Encefalitis herpética confirmada por reacción en cadena de la polimerasa en tiempo real: reporte de caso Herpetic encephalitis confirmed by real time polymerase chain reaction: case report

Directory of Open Access Journals (Sweden)

Beatriz H. Aristizábal

2006-04-01

Full Text Available La encefalitis herpética es una enfermedad grave asociada al virus herpes simple 1 ó 2, con una alta letalidad, incidencia de complicaciones y secuelas neurológicas permanentes. Aparece en forma endémica y en pacientes inmunocompetentes. Puede manifestarse como un cuadro clásico de encefalitis infecciosa con fiebre, cefalea y alteración en el nivel de conciencia. Debido al compromiso del lóbulo temporal las manifestaciones clínicas pueden incluir también alucinaciones, afasia y cambios de personalidad. Las secuelas en los pacientes tratados son significativas. Objetivo: mostrar la importancia de la utilización del diagnóstico molecular temprano en pacientes con sospecha de encefalitis herpética. Métodos: el diagnóstico de la encefalitis herpética ha cambiado en los últimos años gracias al advenimiento de la reacción en cadena de la polimerasa en tiempo real en líquido cefalorraquídeo para Herpes virus simple, una estrategia rápida y de alta sensibilidad y especificidad, que en nuestro medio ha permitido reemplazar los diagnósticos presuntivos realizados por tomografía axial computarizada o electroencefalograma o los bajos rendimientos del aislamiento viral en el líquido cefaloraquídeo. Resultados: se describe el caso clínico de un paciente con encefalitis herpética asistido en nuestro hospital, con diagnóstico confirmado por reacción en cadena de la polimerasa en tiempo real, presentando estudios imaginológicos y neuropsicológicos compatibles con el diagnóstico. Conclusiones: los resultados de laboratorio y el diagnóstico temprano son críticos para el tratamiento precoz y la evolución del paciente. The herpetic encephalitis is a serious disease associated to the herpes virus simplex 1 or 2 with high mortality, permanent incidence of complications and neurological sequels. It appears in endemic form and in immunocompetent patients. It can be shown like a classical manifest of infectious encephalitis, with fever

Challenges in Transitioning Research Data to Operations: The SPoRT Paradigm

Science.gov (United States)

Jedloved, Gary J.; Smith, Matt; McGrath, Kevin

2010-01-01

Established in 2002 to demonstrate the weather and forecasting application of real-time EOS measurements, the NASA Short-term Prediction Research and Transition (SPoRT) program has grown to be an end-to-end research to operations activity focused on the use of advanced NASA modeling and data assimilation approaches, nowcasting techniques, and unique high-resolution multispectral data from EOS satellites to improve short-term weather forecasts on a regional and local scale. With the ever-broadening application of real-time high resolution satellite data from current EOS and planned NPP, JPSS, and GOES-R sensors to weather forecast problems, significant challenges arise in the acquisition, delivery, and integration of the new capabilities into the decision making process of the operational weather community. For polar orbiting sensors such as MODIS, AIRS, VIIRS, and CRiS, the use of direct broadcast ground stations is key to the real-time delivery of the data and derived products in a timely fashion. With the ABI on the geostationary GOES-R satellite, the data volume will likely increase by a factor of 5- 10 from current data streams. However, the high data volume and limited bandwidth of end user facilities presents a formidable obstacle to timely access to the data. This challenge can be addressed through the use of subsetting techniques, innovative web services, and the judicious selection of data formats. Many of these approaches have been implemented by SPoRT for the delivery of real-time products to NWS forecast offices and other weather entities. Once available in decision support systems like AWIPS II, these new data and products must be integrated into existing and new displays that allow for the integration of the data with existing operational products in these systems. SPoRT is leading the way in demonstrating this enhanced capability. This paper will highlight the ways SPoRT is overcoming many of the challenges presented by the enormous data volumes of

SPoRT - An End-to-End R2O Activity

Science.gov (United States)

Jedlovec, Gary J.

2009-01-01

Established in 2002 to demonstrate the weather and forecasting application of real-time EOS measurements, the Short-term Prediction Research and Transition (SPoRT) program has grown to be an end-to-end research to operations activity focused on the use of advanced NASA modeling and data assimilation approaches, nowcasting techniques, and unique high-resolution multispectral observational data applications from EOS satellites to improve short-term weather forecasts on a regional and local scale. SPoRT currently partners with several universities and other government agencies for access to real-time data and products, and works collaboratively with them and operational end users at 13 WFOs to develop and test the new products and capabilities in a "test-bed" mode. The test-bed simulates key aspects of the operational environment without putting constraints on the forecaster workload. Products and capabilities which show utility in the test-bed environment are then transitioned experimentally into the operational environment for further evaluation and assessment. SPoRT focuses on a suite of data and products from MODIS, AMSR-E, and AIRS on the NASA Terra and Aqua satellites, and total lightning measurements from ground-based networks. Some of the observations are assimilated into or used with various versions of the WRF model to provide supplemental forecast guidance to operational end users. SPoRT is enhancing partnerships with NOAA / NESDIS for new product development and data access to exploit the remote sensing capabilities of instruments on the NPOESS satellites to address short term weather forecasting problems. The VIIRS and CrIS instruments on the NPP and follow-on NPOESS satellites provide similar observing capabilities to the MODIS and AIRS instruments on Terra and Aqua. SPoRT will be transitioning existing and new capabilities into the AWIIPS II environment to continue the continuity of its activities.

La prueba de McTaggart de la irrealidad del tiempo

Directory of Open Access Journals (Sweden)

Eduardo Shore

2010-10-01

Full Text Available McTaggart se apoya en el hecho de que no percibimos el tiempo en si mismo, un tiempo vacio de sucesos:  lo que en verdad percibimos es el transcurrir de los acontecimientos, tanto de los extemos como los de nuestro propio estado intemo en la conciencia. Todo el desarrollo de McTaggart y tambien su originalidad, consiste en el desentraiiamiento del mecanismo por el cual aprehendemos el caracter temporal del acaecer, a traves del cual tenemos la ilusión de que percibimos el tiempo. De ese analisis se desprende su tesis: La manera de captar lo temporal es contradictoria en si misma, par lo que, si el significante es contradictorio, lo significado, en este caso el tiempo, es nada: el nihil privativum kantiano" Pregunto: no tendra razón McTaggart, en cuyo caso podria decirse que los sucesos "son" el tiempo?

Los diferentes conceptos de tiempo en el aula. Del soliloquio al diálogo: el espacio

Directory of Open Access Journals (Sweden)

Leonor Sáez Méndez

2012-12-01

Full Text Available Se trata, apartir de las variables cognitivas descubrir, indirectamente, la función imprescincible que tienen las variables afectivas en la enseñanza de las lenguas extranjeras. La transmisión y orientación para la incorporación de una segunda lengua exige al mediador distinguir diferentes conceptos filosóficos de tiempo y espacio. A partir de los 70 las necesidades lingüísticas en la transmisión de las segundas lenguas (vivas se han tintado de kantianismo. Junto a la pragmática y a los principios de interculturalidad se nos presenta la necesidad de trabajar conceptos como percepción, disposición, motivación, intuición, disposición, empatía y miedos. Factores complejos, que influyen en el proceso de incorporación de un segundo idioma, cabe preguntarse, si ellos son solo temporales. El aprendizaje real, el autónomo, requiere de la correlación de un acompañamiento que ayude a economizar recursos y a facilitar el entusiasmo de ampliar nuestras identidades en las lenguas que incorporamos. Sobre estos aspectos encontramos en el periodo crítico y, especialmente, en el post-crítico kantiano, umbrales empíricos que facilitan nuestra reflexión y orientan en la elección de ejercicios prácticos. En la exposición se propone: 1. Reflexionar sobre las diferentes concepciones del tiempo (como sentido interno, tiempo cognitivo seguidas en la didáctica de la enseñanza de idiomas extranjeros. 2. Trabajar la cuestión de si es posible restringirnos metodológicamente al tiempo y desestimar el espacio, o por el contrario, es el espacio el que determina al tiempo en la incorporación de una lengua como lugar de encuentro.

MRAS speed estimator with fuzzy and PI stator resistance adaptation for sensorless induction motor drives using RT-lab

Directory of Open Access Journals (Sweden)

S. Mohan Krishna

2016-09-01

Full Text Available This paper presents a real-time simulation study of Model Reference Adaptive System based rotor speed estimator with parallel stator resistance adaptation mechanism for speed sensorless induction motor drive. Both, the traditional Proportional Integral and Fuzzy logic based control mechanisms are utilised for stator resistance adaptation, while, the rotor speed is estimated parallely by means of Proportional Integral based mechanism. The estimator's response to dynamic changes in Load perturbation and doubling of the nominal value of the actual stator resistance of the motor is observed. The superiority of the fuzzy based stator resistance adaptation in the Model Reference Adaptive System estimator is proved through results validated in real-time. The purpose of employing a fairly new real-time platform is to reduce the test and prototype time. The model is initially built using Matlab/Simulink blocksets and the results are validated in real time using RT-Lab. The RT-lab blocksets are integrated into the Simulink model and then executed in real-time using the OP-4500 target developed by Opal-RT. The real-time simulation results are observed in the workstation.

Analyzer of neutron flux in real time; Analizador de flujo neutronico en tiempo real

Energy Technology Data Exchange (ETDEWEB)

Rojas S, A.S.; Carrillo M, R.A.; Balderas, E.G. [Instituto Nacional de Investigaciones Nucleares, A.P. 18-1027, 11801 Mexico D.F. (Mexico)

1999-07-01

With base in the study of the real signals of neutron flux of instability events occurred in the Laguna Verde nuclear power plant where the nucleus oscillation phenomena of the reactor are in the 0 to 2.5 Hz range, it has been seen the possibility about the development a surveillance and diagnostic equipment capable to analyze in real time the behavior of nucleus in this frequencies range. An important method for surveillance the stability of the reactor nucleus is the use of the Power spectral density which allows to determine the frequencies and amplitudes contained in the signals. It is used an instrument carried out by LabVIEW graphic programming with a data acquisition card of 16 channels which works at Windows 95/98 environment. (Author)

Predicción de series de tiempo con redes cascada-correlación

Directory of Open Access Journals (Sweden)

Juan David Velásquez

2010-01-01

Full Text Available Las redes neuronales, y en particular los perceptrones multicapa (MLP, han sido reconocidos como una de las más poderosas técnicas para estimar series de tiempo; sin embargo, la técnica de redes cascada-correlación (CC es un fuerte competidor para pronosticar series temporales pues incorpora mejoras a los problemas de identificabilidad estadística del modelo del MLP. En és- te artículo se compara el rendimiento de las redes CC respecto de otras técnicas, entre ellas el MLP, ANN y Arima, usando va- rias series de tiempo no lineales del mundo real, con el fin de determinar si las CC ofrecen buenos resultados en la práctica. Los resultados indican que las redes CC, en la mayoría de los casos, son superiores a los MLP, ANN y Arima, logrando errores me- nores en magnitud que los reportados en la literatura usando dichas técnicas, mientras que en relación a DAN2 se lograron e- rrores cercanos e incluso mejores.

[Detecting HB-1 Expression Level in Bone Marrow of Acute Leukemia Patients by Real-Time Fluorescence Quantitative RT-PCR].

Science.gov (United States)

Wang, Qing-Yun; Li, Yuan; Ji, Li; Liang, Ze-Yin; Liu, Wei; Ren, Han-Yun; Qiu, Zhi-Xiang

2018-02-01

To investigate the expression level of HB-1 gene in patients with acute lymphoblastic leukemia (ALL) and the significance of HB-1 gene in monitoring of minimal residual disease (MRD). The method of real-time fluorescence quantitative RT-PCR (Taqman probe) was established to detect the expression levels of HB-1 gene; then the sensitivity, specificity and repeatability of this assay were evaluated and verified. The HB-1 gene expression levels in bone marrow of 183 cases of ALL, 70 cases of acute myeloid leukemias (AML), 52 cases of non-malignant hematologic diseases and 24 healthy hematopoietic stem cell donors were detected. The correlation of HB-1 level with diagnosis and relapse was analyzed by detecting bone marrow samples of 33 B-ALL. The sensitivity of this assay reached the 10 -4 level. The coefficient of variation for inter-batch and inter-tube of HB-1 were 6.79% and 4.80%, respectively. It was found that HB-1 gene specifically expressed in acute B lymphoblastic leukemia. The median expression levels of HB-1 gene in newly diagnosed and relapsed B-ALL patients were statistically significantly higher than those in ALL in complete remission(CR), newly diagnosed T-ALL, newly diagnosed AML, non-malignant hematologic diseases, and healthy hematopoietic stem cell donors(33.0% vs 0.68%, 0.07%, 0.02%, 0.58% and 0, respectively) (P0.05). The expression level of HB-1 gene declined sharply when B-ALL patients reached complete remission (0-7.99%, with median level 0.68%), but increased when relapsed (7.69%, 8.08% and 484.0% in 3 relapsed samples), which was in accordance with results of flow cytometry. HB-1 gene specifically expressed in acute B lymphoblastic leukemia cells. The established real-time fluorescence quantitative RT-PCR assay shows good sensitivity, specificity and repeatability, thus, can be used as a biological marker in the clinical detection, monitoring MRD and predicting of early relapse for B-ALL patients.

A Formal Approach for RT-DVS Algorithms Evaluation Based on Statistical Model Checking

Directory of Open Access Journals (Sweden)

Shengxin Dai

2015-01-01

Full Text Available Energy saving is a crucial concern in embedded real time systems. Many RT-DVS algorithms have been proposed to save energy while preserving deadline guarantees. This paper presents a novel approach to evaluate RT-DVS algorithms using statistical model checking. A scalable framework is proposed for RT-DVS algorithms evaluation, in which the relevant components are modeled as stochastic timed automata, and the evaluation metrics including utilization bound, energy efficiency, battery awareness, and temperature awareness are expressed as statistical queries. Evaluation of these metrics is performed by verifying the corresponding queries using UPPAAL-SMC and analyzing the statistical information provided by the tool. We demonstrate the applicability of our framework via a case study of five classical RT-DVS algorithms.

Las facetas del tiempo en la prosa de Miguel Delibes

Directory of Open Access Journals (Sweden)

Maria-Teresa De Pieri

2012-12-01

Full Text Available Con el presente estudio nos proponemos investigar la representación del tiempo y sus matices en la obra de Miguel Delibes, con particular atención a la prosa periodística y a los cuentos que el escritor vallisoletano produjo a lo largo de su intenso recorrido literario. La categoría del tiempo se relaciona en estos escritos con una idea de la existencia que sigue el ritmo cíclico de la naturaleza; un tiempo natural y mítico a la vez, un tiempo personal y colectivo, cuya fugacidad se detiene solo a través del poder eternizante de las palabras. En este sentido, la prosa breve de Delibes pretende conservar un patrimonio léxico que corre el riesgo de ser eliminado con el tiempo y con las transformaciones sociales que ello conlleva. La cuestión del tiempo abarca no solo el nivel temático y su vocabulario, sino que también irrumpe en un ámbito formal y puramente lingüístico, que intentaremos evidenciar, reflexionando sobre las particularidades de los verbos, de los adverbios y de las locuciones adverbiales, de las que la obra del escritor se alimenta de manera considerable.

Tiempo y narración en La Regenta de Clarín

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Vladimir Karanović

2012-12-01

Full Text Available Nuestro trabajo se ocupa del concepto pluridimensional del tiempo en La Regenta de Leopoldo Alas «Clarín». El tiempo es una de las categorías principales de la experiencia humana y un componente básico del texto narrativo: se ordena cronológicamente en la historia y se materializa discursivamente. Se puede afirmar que se trata de una categoría que, hasta un cierto grado, pertenece a la dimensión espacial más que a la temporal. Por este motivo, el tiempo y la narración en la novela se pueden marcar como pseudo-temporales. El concepto del tiempo en esta novela clariniana se puede percibir de dos modos principales: el tiempo lingüístico, narrativo, y el tiempo figurado, vinculado a la imagen temporal suscitada por el texto narrativo (tiempo narrado y tiempo narrante o tiempo de la historia y tiempo del discurso. El tiempo narrativo del texto recurre con preferencia a tres métodos: retrospección, anticipación e inversión. En nuestro artículo se estudian también los aspectos sintácticos de la categoría del tiempo: sucesión, orden y duración. En la novela clariniana se distinguen dos partes, de similar extensión, que coinciden con los dos volúmenes publicados (1884-85. Una parte estática y expositiva que se desarrolla durante tres días (I-XV; y otra parte activa durante unos tres años (XVI-XXX. Los rasgos estructurales y temporales de la narración nos permiten hacer hincapié en la estructura circular de la novela: todo ha pasado y nada ha cambiado. Vetusta, la estática localidad, ha dejado que se consumase en su interior la tragedia humana. De este modo, Clarín juega estratégicamente con el concepto de tiempo con la intención de trasformar a los personajes en piezas que, tras tanta lucha espiritual, han quedado inertes y petrificadas.

Tiempo y edad biológica

Directory of Open Access Journals (Sweden)

Vargas, Esteban

2013-04-01

Full Text Available In this paper we attempt to think if it is possible to conceive age as a characteristic time of living organisms including man. In the paper we review several concepts of age coming from sciences such as chronobiology, gerontology, evolutionary biology and developmental biology, and trough all of them, we see that biological time is thought as time measured by a clock. We propose that age as biological time must be understood as a phase in the biological process, but depending on the complete cycle of the organism. In the case of human being, his age is determined also by what is “expected” about him. His age is then determined by biological and cultural aspects.En este trabajo intentamos meditar si es posible concebir la edad como un tiempo propio de los seres vivos incluyendo al hombre. En el trabajo revisamos diversos conceptos de edad obtenidos de diversas ciencias biológicas como la cronobiología, la gerontología, la biología evolutiva y la biología del desarrollo descubriendo que en ellas, en general, se sigue pensando el tiempo biológico como el tiempo que mide un reloj. Nosotros proponemos que la edad como tiempo biológico debe ser entendida como una fase del proceso biológico, pero en función del ciclo completo del organismo. En el caso del ser humano, su edad está determinada también por lo que se “espera” de él. Su edad está determinada entonces por aspectos biológicos y culturales.

Autobiografía intelectual de Manuel Martín Serrano. Los tiempos que han traído nuestro tiempo

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Revista Chasqui

2011-09-01

Full Text Available Esta autobiografía esclarece el sentido que tiene la creación científica en la vida de Manuel MARTÍN SERRANO y al hacerlo, revela cómo estamos concernidos por la aventura del conocimiento, las gentes que ahora compartimos y antes compartieron con él, la misma época existencial. MMS sugiere que nuestro tiempo se ha conformado por el transcurso de dos épocas diferentes: En España la primera de ellas abarca la dictadura franquista y la transición democrática, que concluyó hacia 1982. Es "Del tiempo del silencio al de la esperanza" Le sigue la segunda época, en la que estamos desde entonces: "Del tiempo de la esperanza al de la humanización" Es nuestro presente y previsiblemente se prolongará durante generaciones. Dice el Autor que son dos periodos indisociables; y que sin embargo el tránsito de uno al otro ha supuesto una rotura histórica.

Selection of reference genes for quantitative real time RT-PCR during dimorphism in the zygomycete Mucor circinelloides.

Science.gov (United States)

Valle-Maldonado, Marco I; Jácome-Galarza, Irvin E; Gutiérrez-Corona, Félix; Ramírez-Díaz, Martha I; Campos-García, Jesús; Meza-Carmen, Víctor

2015-03-01

Mucor circinelloides is a dimorphic fungal model for studying several biological processes including cell differentiation (yeast-mold transitions) as well as biodiesel and carotene production. The recent release of the first draft sequence of the M. circinelloides genome, combined with the availability of analytical methods to determine patterns of gene expression, such as quantitative Reverse transcription-Polymerase chain reaction (qRT-PCR), and the development of molecular genetic tools for the manipulation of the fungus, may help identify M. circinelloides gene products and analyze their relevance in different biological processes. However, no information is available on M. circinelloides genes of stable expression that could serve as internal references in qRT-PCR analyses. One approach to solve this problem consists in the use of housekeeping genes as internal references. However, validation of the usability of these reference genes is a fundamental step prior to initiating qRT-PCR assays. This work evaluates expression of several constitutive genes by qRT-PCR throughout the morphological differentiation stages of M. circinelloides; our results indicate that tfc-1 and ef-1 are the most stable genes for qRT-PCR assays during differentiation studies and they are proposed as reference genes to carry out gene expression studies in this fungus.

Modelando tiempo y espacio

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Róger Churnside Harrison

2008-06-01

Full Text Available En este artículo se elaboran modelos de las ideas de tiempo y espacio social de Anthony Giddens o, por lo menos, compatibles con ellas. Hacia tal efecto, se aplican instrumentos gráficos y matemáticos para combinar conceptos cualitativos y cuantitativos, de los cuales se obtienen los siguientes resultados: Desde una perspectiva teórica y lógica, se muestra que la estructura de toda organización envuelve una cantidad de trabajo operativo que no es la simple suma de trabajo de sus miembros, sino una multiplicación o fracción de esa suma dada por la razón de la estancia promedio de trabajadores a la duración del ejercicio gerencial, ambas medidas en tiempo. Esta razón de tiempo laboral/gerencial tiene un carácter dual: se deriva del proceso de estructuración organizacional; y, a la vez, afecta, retroalimenta o reactiva ese proceso. En términos prácticos, los modelos permiten describir, cuantitativamente, fenómenos organizacionales de siempre o permanentes, como el compromiso recíproco o la responsabilidad mutua de gerentes y trabajadores; los cuales, en la tradición económica y sociológica, sólo han sido manejados de modo intuitivo, implícito o cualitativo. También permiten analizar y sintetizar problemas de estabilidad/inestabilidad y crecimiento/declinación observados en organizaciones actuales, especialmente corporaciones capitalistas. La composición de los modelos, así como las consecuencias y predicciones derivadas de ellos, son ilustradas con información empírica de varias fuentes, incluyendo las bases de datos internacionales de Challenger, Gray and Christmas Inc., Booz Allen Hamilton y The Economist.

RT-Syn: A real-time software system generator

Science.gov (United States)

Setliff, Dorothy E.

1992-01-01

This paper presents research into providing highly reusable and maintainable components by using automatic software synthesis techniques. This proposal uses domain knowledge combined with automatic software synthesis techniques to engineer large-scale mission-critical real-time software. The hypothesis centers on a software synthesis architecture that specifically incorporates application-specific (in this case real-time) knowledge. This architecture synthesizes complex system software to meet a behavioral specification and external interaction design constraints. Some examples of these external constraints are communication protocols, precisions, timing, and space limitations. The incorporation of application-specific knowledge facilitates the generation of mathematical software metrics which are used to narrow the design space, thereby making software synthesis tractable. Success has the potential to dramatically reduce mission-critical system life-cycle costs not only by reducing development time, but more importantly facilitating maintenance, modifications, and extensions of complex mission-critical software systems, which are currently dominating life cycle costs.

Normalización de un sistema de reacción en cadena de la polimerasa en tiempo real para la cuantificación de papilomavirus humano de alto riesgo oncogénico

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Yudira Soto

2012-04-01

Full Text Available El objetivo de este trabajo fue normalizar e implementar un sistema de reacción en cadena de la polimerasa en tiempo real, para determinar la carga viral de 7 genotipos de papilomavirus humano (PVH de alto riesgo oncogénico. Se evaluó la especificidad del sistema y se construyeron las curvas estándar para PVH 16 y 18, que se emplearon para la cuantificación de ADN viral en diferentes muestras de pacientes identificados como positivos a PVH, mediante reacción en cadena de la polimerasa (RCP cualitativa y secuenciación nucleotídica. Se obtuvieron dos curvas estándar para PVH 16 y 18, a partir del ADN genómico de las líneas celulares SiHa y HeLa, las que mostraron una buena correlación lineal ( r = -0,99 y valores bajos de error. El límite inferior de detección a partir del ADN de las líneas celulares fue de hasta 10 copias para ambos genotipos. No se obtuvo reacción cruzada entre los diferentes tipos de PVH ni con otros virus ADN. La reacción en cadena de la polimerasa en tiempo real (RCP-TR normalizada probó ser un sistema simple, rápido, específico y altamente sensible. Además, permitirá desarrollar investigaciones sobre la prevalencia de infección por PVH en Cuba, con vistas a la aplicación de las vacunas que se encuentran disponibles en el mercado internacional, así como la evaluación de otros candidatos vacunales diseñados en el futuro.

The Natural History of Kidney Graft Cortical Microcirculation Determined by Real-Time Contrast-Enhanced Sonography (RT-CES).

Science.gov (United States)

Jiménez, Carlos; López, María Ovidia; Ros, Amaia; Aguilar, Ana; Menendez, David; Rivas, Begoña; Santana, María José; Vaca, Marco Antonio; Escuin, Fernando; Madero, Rosario; Selgas, Rafael

2016-01-01

Kidney transplantation is the therapy of choice for end-stage kidney disease. Graft's life span is shorter than expected due in part to the delayed diagnosis of various complications, specifically those related to silent progression. It is recognized that serum creatinine levels and proteinuria are poor markers of mild kidney lesions, which results in delayed clinical information. There are many investigation looking for early markers of graft damage. Decreasing kidney graft cortical microcirculation has been related to poor prognosis in kidney transplantation. Cortical capillary blood flow (CCBF) can be measured by real-time contrast-enhanced sonography (RT-CES). Our aim was to describe the natural history of CCBF over time under diverse conditions of kidney transplantation, to explore the influence of donor conditions and recipient events, and to determine the capacity of CCBF for predicting renal function in medium term. RT-CES was performed in 79 consecutive kidney transplant recipients during the first year under regular clinical practice. Cortical capillary blood flow was measured. Clinical variables were analyzed. The influence of CCBF has been determined by univariate and multivariate analysis using mixed regression models based on sequential measurements for each patient over time. We used a first-order autoregression model as the structure of the covariation between measures. The post-hoc comparisons were considered using the Bonferroni correction. The CCBF values varied significantly over the study periods and were significantly lower at 48 h and day 7. Brain-death donor age and CCBF levels showed an inverse relationship (r: -0.62, p<0.001). Living donors showed higher mean CCBF levels than brain-death donors at each point in the study. These significant differences persisted at month 12 (54.5 ± 28.2 vs 33.7 ± 30 dB/sec, living vs brain-death donor, respectively, p = 0.004) despite similar serum creatinine levels (1.5 ± 0.3 and 1.5 ± 0.5 mg/dL). A

Characterization of human coronavirus etiology in Chinese adults with acute upper respiratory tract infection by real-time RT-PCR assays.

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Roujian Lu

Full Text Available BACKGROUND: In addition to SARS associated coronaviruses, 4 non-SARS related human coronaviruses (HCoVs are recognized as common respiratory pathogens. The etiology and clinical impact of HCoVs in Chinese adults with acute upper respiratory tract infection (URTI needs to be characterized systematically by molecular detection with excellent sensitivity. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we detected 4 non-SARS related HCoV species by real-time RT-PCR in 981 nasopharyngeal swabs collected from March 2009 to February 2011. All specimens were also tested for the presence of other common respiratory viruses and newly identified viruses, human metapneumovirus (hMPV and human bocavirus (HBoV. 157 of the 981 (16.0% nasopharyngeal swabs were positive for HCoVs. The species detected were 229E (96 cases, 9.8%, OC43 (42 cases, 4.3%, HKU1 (16 cases, 1.6% and NL63 (11 cases, 1.1%. HCoV-229E was circulated in 21 of the 24 months of surveillance. The detection rates for both OC43 and NL63 were showed significantly year-to-year variation between 2009/10 and 2010/11, respectively (P<0.001 and P = 0.003, and there was a higher detection frequency of HKU1 in patients aged over 60 years (P = 0.03. 48 of 157(30.57% HCoV positive patients were co-infected. Undifferentiated human rhinoviruses and influenza (Flu A were the most common viruses detected (more than 35% in HCoV co-infections. Respiratory syncytial virus (RSV, human parainfluenza virus (PIV and HBoV were detected in very low rate (less than 1% among adult patients with URTI. CONCLUSIONS/SIGNIFICANCE: All 4 non-SARS-associated HCoVs were more frequently detected by real-time RT-PCR assay in adults with URTI in Beijing and HCoV-229E led to the most prevalent infection. Our study also suggested that all non-SARS-associated HCoVs contribute significantly to URTI in adult patients in China.

An advanced real time energy management system for microgrids

International Nuclear Information System (INIS)

Elsied, Moataz; Oukaour, Amrane; Youssef, Tarek; Gualous, Hamid; Mohammed, Osama

2016-01-01

This paper presents an advanced Real-Time Energy Management System (RT-EMS) for Microgrid (MG) systems. The proposed strategy of RT-EMS capitalizes on the power of Genetic Algorithms (GAs) to minimize the energy cost and carbon dioxide emissions while maximizing the power of the available renewable energy resources. MATLAB-dSPACE Real-Time Interface Libraries (MLIB/MTRACE) are used as new tools to run the optimization code in Real-Time Operation (RTO). The communication system is developed based on ZigBee communication network which is designed to work in harsh radio environment where the control system is developed based on Advanced Lead-Lag Compensator (ALLC) which its parameters are tuned online to achieve fast convergence and good tracking response. The proposed RT-EMS along with its control and communication systems is experimentally tested to validate the results obtained from the optimization algorithm in a real MG testbed. The simulation and experimental results using real-world data highlight the effectiveness of the proposed RT-EMS for MGs applications. - Highlights: • Real-time energy management system of a typical MG is developed, and analyzed. • RT-EMS considered the nonlinear cost function and emission constraints. • MLIB/MTRACE libraries in dSPACE are used as new tools to run the optimization code. • The communication system is developed based on a Zigbee communication network. • Control system parameters are tuned online to achieve good tracking response.

Comparison of the genexpert enterovirus assay (GXEA) with real-time one step RT-PCR for the detection of enteroviral RNA in the cerebrospinal fluid of patients with meningitis.

Science.gov (United States)

Hong, JiYoung; Kim, Ahyoun; Hwang, Seoyeon; Cheon, Doo-Sung; Kim, Jong-Hyen; Lee, June-Woo; Park, Jae-Hak; Kang, Byunghak

2015-02-13

Enteroviruses (EVs) are the leading cause of aseptic meningitis worldwide. Detection of enteroviral RNA in clinical specimens has been demonstrated to improve the management of patient care, especially that of neonates and young children. To establish a sensitive and reliable assay for routine laboratory diagnosis, we compared the sensitivity and specificity of the GeneXpert Enterovirus Assay (GXEA) with that of the reverse transcription polymerase chain reaction (RT-PCR) based assay referred to as real-time one step RT-PCR (RTo-PCR). The sensitivity/specificity produced by GXEA and RTo-PCR were 100%/100% and 65%/100%, respectively. Both methods evaluated in this article can be used for detection of enterovirus in clinical specimens and these nucleic acid amplification methods are useful assays for the diagnosis of enteroviral infection.

SPoRT: Transitioning NASA and NOAA Experimental Data to the Operational Weather Community

Science.gov (United States)

Jedlovec, Gary J.

2013-01-01

Established in 2002 to demonstrate the weather and forecasting application of real-time EOS measurements, the NASA Short-term Prediction Research and Transition (SPoRT) program has grown to be an end-to-end research to operations activity focused on the use of advanced NASA modeling and data assimilation approaches, nowcasting techniques, and unique high-resolution multispectral data from EOS satellites to improve short-term weather forecasts on a regional and local scale. With the ever-broadening application of real-time high resolution satellite data from current EOS, Suomi NPP, and planned JPSS and GOES-R sensors to weather forecast problems, significant challenges arise in the acquisition, delivery, and integration of the new capabilities into the decision making process of the operational weather community. For polar orbiting sensors such as MODIS, AIRS, VIIRS, and CRiS, the use of direct broadcast ground stations is key to the real-time delivery of the data and derived products in a timely fashion. With the ABI on the geostationary GOES-R satellite, the data volumes will likely increase by a factor of 5-10 from current data streams. However, the high data volume and limited bandwidth of end user facilities presents a formidable obstacle to timely access to the data. This challenge can be addressed through the use of subsetting techniques, innovative web services, and the judicious selection of data formats. Many of these approaches have been implemented by SPoRT for the delivery of real-time products to NWS forecast offices and other weather entities. Once available in decision support systems like AWIPS II, these new data and products must be integrated into existing and new displays that allow for the integration of the data with existing operational products in these systems. SPoRT is leading the way in demonstrating this enhanced capability. This paper will highlight the ways SPoRT is overcoming many of the challenges presented by the enormous data

Study of Real-Time Programming for Simulation of Nuclear Reactor Dynamics

International Nuclear Information System (INIS)

Aliq; Widi Setiawan; Hendro Tjahjono

2003-01-01

Many aspects of real-time system are reviewed including the method, programming techniques, and its possibility to be applied in research reactor. The main point of real-time system is that it must designed to have a characteristics not only fast response but the most important is on-time response. In order to cover this requirements, real-time system need also a simple operating system consist of a kernel and application software. At the level of programming, real-time system require a modular approach, hard and soft time division and interprocess communications. The implementation can include some real-time (RT) operation system such as: RT-Linux, RT-OS9 and RT-Mat lab. Because of fast and on-time response requirements, if this system is going to be applied to research reactor, the transfer function model maybe more appropriate model compared to point kinetics model for the reason of computation time. (author)

Diagnóstico molecular de tuberculosis extrapulmonar y sensibilidad a rifampicina con un método automatizado en tiempo real

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Adrián Peñata

2016-04-01

Conclusión. La prueba Xpert® MTB/RIF tuvo un buen desempeño en muestras de diferentes tejidos y líquidos, y constituye un avance significativo como apoyo para el diagnóstico de la tuberculosis extrapulmonar en términos de tiempo y porcentaje de positividad.

La relación entre la capacidad de atencion dividida y la estimación prospectiva del tiempo

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Susana Celeste Azzollini

2004-01-01

Full Text Available Se realizó una investigación cuyo objetivo fue determinar si la capacidad de atención dividida resultaba explicativa de la variabilidad de las estimaciones prospectivas del tiempo. Los modelos teóricos sobre dicha estimación postulan que los recursos atencionales de procesamiento están divididos entre un procesador temporal, que cuenta y almacena unidades temporales subjetivas (Subjective Temporal Units - STUs y otras actividades de procesamiento no temporal (Zakay, 1993. Se seleccionó una muestra de 36 estudiantes universitarios que fueron asignados al azar a cada una de las seis condiciones experimentales, determinadas por un diseño factorial 3 x 2, y sus factores básicos fueron: cantidad de tareas y niveles de complejidad del material. Se confeccionaron materiales para las diferentes tareas y otros con el fin de evaluar las aptitudes mnémicas y la capacidad de atención dividida. Se solicitó a los sujetos que mientras realizaban las tareas, detuvieran un cronómetro cuando consideraran que había pasado un período de tiempo predeterminado. La estimación del tiempo se calculó por la diferencia en segundos entre el tiempo real y el tiempo estimado. Los datos se procesaron con análisis de correlación, discriminante y factorial de variancia. Los resultados obtenidos indican que la capacidad de atención dividida se correlaciona con la estimación temporal prospectiva y además, la capacidad de atención dividida resulta un buen predictor de la capacidad estimativa de los sujetos, especialmente de los sobre-estimadores. Las diferencias en las aptitudes mnémicas no explicaron la variabilidad de las estimaciones prospectivas.

Recent Upgrades to NASA SPoRT Initialization Datasets for the Environmental Modeling System

Science.gov (United States)

Case, Jonathan L.; Lafontaine, Frank J.; Molthan, Andrew L.; Zavodsky, Bradley T.; Rozumalski, Robert A.

2012-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center has developed several products for its NOAA/National Weather Service (NWS) partners that can initialize specific fields for local model runs within the NOAA/NWS Science and Training Resource Center Environmental Modeling System (EMS). The suite of SPoRT products for use in the EMS consists of a Sea Surface Temperature (SST) composite that includes a Lake Surface Temperature (LST) analysis over the Great Lakes, a Great Lakes sea-ice extent within the SST composite, a real-time Green Vegetation Fraction (GVF) composite, and NASA Land Information System (LIS) gridded output. This paper and companion poster describe each dataset and provide recent upgrades made to the SST, Great Lakes LST, GVF composites, and the real-time LIS runs.

Selection and validation of reference genes for gene expression analysis in switchgrass (Panicum virgatum using quantitative real-time RT-PCR.

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Jacinta Gimeno

Full Text Available Switchgrass (Panicum virgatum has received a lot of attention as a forage and bioenergy crop during the past few years. Gene expression studies are in progress to improve new traits and develop new cultivars. Quantitative real time PCR (qRT-PCR has emerged as an important technique to study gene expression analysis. For accurate and reliable results, normalization of data with reference genes is essential. In this work, we evaluate the stability of expression of genes to use as reference for qRT-PCR in the grass P. virgatum. Eleven candidate reference genes, including eEF-1α, UBQ6, ACT12, TUB6, eIF-4a, GAPDH, SAMDC, TUA6, CYP5, U2AF, and FTSH4, were validated for qRT-PCR normalization in different plant tissues and under different stress conditions. The expression stability of these genes was verified by the use of two distinct algorithms, geNorm and NormFinder. Differences were observed after comparison of the ranking of the candidate reference genes identified by both programs but eEF-1α, eIF-4a, CYP5 and U2AF are ranked as the most stable genes in the samples sets under study. Both programs discard the use of SAMDC and TUA6 for normalization. Validation of the reference genes proposed by geNorm and NormFinder were performed by normalization of transcript abundance of a group of target genes in different samples. Results show similar expression patterns when the best reference genes selected by both programs were used but differences were detected in the transcript abundance of the target genes. Based on the above research, we recommend the use of different statistical algorithms to identify the best reference genes for expression data normalization. The best genes selected in this study will help to improve the quality of gene expression data in a wide variety of samples in switchgrass.

Conceptos y fundamentos para una crítica del ‘tiempo vulgar’ en Heidegger

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Martin Simesen de Bielke

2016-12-01

Full Text Available Una crítica del concepto vulgar de tiempo busca explicitar los caracteres básicos de dicho concepto y fundamentalmente las aporías en el planteo. En relación a lo primero, en este artículo se pone énfasis en el carácter “originario” del concepto vulgar, es decir, su conexión con el “tiempo del mundo” y en el nexo de fundamentación que conecta ambos – tiempo vulgar y tiempo del mundo – con la temporalidad originaria del Dasein. En relación a lo segundo (las aporías, el artículo cuestiona los límites de una atribución del concepto vulgar de tiempo a Aristóteles; se discute asimismo la homologación de espacio y tiempo, por un lado, y la relación entre tiempo y presencia por otro, dos presupuestos de la representación tradicional (física y filosófica del tiempo como medida/parámetro de los cambios en general.

El tiempo en Cien años de soledad

OpenAIRE

Valesini, María Silvina; Cortés, Karina Alejandra

2005-01-01

En este trabajo vamos a abordar el tema del tiempo en la obra de Gabriel García Márquez Cien años de soledad. Consideramos que, dentro de las múltiples miradas que la obra posibilita, la del tiempo es una de las más pregnantes. La referencia al tiempo es recurrente, derivándose a conceptos relacionados tales como la memoria, el olvido, la muerte. Facultad de Periodismo y Comunicación Social

Application of reverse transcription-PCR and real-time PCR in nanotoxicity research.

Science.gov (United States)

Mo, Yiqun; Wan, Rong; Zhang, Qunwei

2012-01-01

Reverse transcription-polymerase chain reaction (RT-PCR) is a relatively simple and inexpensive technique to determine the expression level of target genes and is widely used in biomedical science research including nanotoxicology studies for semiquantitative analysis. Real-time PCR allows for the detection of PCR amplification in the exponential growth phase of the reaction and is much more quantitative than traditional RT-PCR. Although a number of kits and reagents for RT-PCR and real-time PCR are commercially available, the basic principles are the same. Here, we describe the procedures for total RNA isolation by using TRI Reagent, for reverse transcription (RT) by M-MLV reverse transcriptase, and for PCR by GoTaq(®) DNA Polymerase. And real-time PCR will be performed on an iQ5 multicolor real-time PCR detection system by using iQ™ SYBR Green Supermix.

Evaluation of candidate reference genes for gene expression normalization in Brassica juncea using real time quantitative RT-PCR.

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Ruby Chandna

Full Text Available The real time quantitative reverse transcription PCR (qRT-PCR is becoming increasingly important to gain insight into function of genes. Given the increased sensitivity, ease and reproducibility of qRT-PCR, the requirement of suitable reference genes for normalization has become important and stringent. It is now known that the expression of internal control genes in living organism vary considerably during developmental stages and under different experimental conditions. For economically important Brassica crops, only a couple of reference genes are reported till date. In this study, expression stability of 12 candidate reference genes including ACT2, ELFA, GAPDH, TUA, UBQ9 (traditional housekeeping genes, ACP, CAC, SNF, TIPS-41, TMD, TSB and ZNF (new candidate reference genes, in a diverse set of 49 tissue samples representing different developmental stages, stress and hormone treated conditions and cultivars of Brassica juncea has been validated. For the normalization of vegetative stages the ELFA, ACT2, CAC and TIPS-41 combination would be appropriate whereas TIPS-41 along with CAC would be suitable for normalization of reproductive stages. A combination of GAPDH, TUA, TIPS-41 and CAC were identified as the most suitable reference genes for total developmental stages. In various stress and hormone treated samples, UBQ9 and TIPS-41 had the most stable expression. Across five cultivars of B. juncea, the expression of CAC and TIPS-41 did not vary significantly and were identified as the most stably expressed reference genes. This study provides comprehensive information that the new reference genes selected herein performed better than the traditional housekeeping genes. The selection of most suitable reference genes depends on the experimental conditions, and is tissue and cultivar-specific. Further, to attain accuracy in the results more than one reference genes are necessary for normalization.

Hard Real-Time Networking on Firewire

NARCIS (Netherlands)

Zhang, Yuchen; Orlic, Bojan; Visser, Peter; Broenink, Jan

2005-01-01

This paper investigates the possibility of using standard, low-cost, widely used FireWire as a new generation fieldbus medium for real-time distributed control applications. A real-time software subsys- tem, RT-FireWire was designed that can, in combination with Linux-based real-time operating

One-step multiplex real-time RT-PCR assay for detecting and genotyping wild-type group A rotavirus strains and vaccine strains (Rotarix® and RotaTeq®) in stool samples

Science.gov (United States)

Mijatovic-Rustempasic, Slavica; Esona, Mathew D.; Tam, Ka Ian; Quaye, Osbourne; Bowen, Michael D.

2016-01-01

Background. Group A rotavirus (RVA) infection is the major cause of acute gastroenteritis (AGE) in young children worldwide. Introduction of two live-attenuated rotavirus vaccines, RotaTeq® and Rotarix®, has dramatically reduced RVA associated AGE and mortality in developed as well as in many developing countries. High-throughput methods are needed to genotype rotavirus wild-type strains and to identify vaccine strains in stool samples. Quantitative RT-PCR assays (qRT-PCR) offer several advantages including increased sensitivity, higher throughput, and faster turnaround time. Methods. In this study, a one-step multiplex qRT-PCR assay was developed to detect and genotype wild-type strains and vaccine (Rotarix® and RotaTeq®) rotavirus strains along with an internal processing control (Xeno or MS2 RNA). Real-time RT-PCR assays were designed for VP7 (G1, G2, G3, G4, G9, G12) and VP4 (P[4], P[6] and P[8]) genotypes. The multiplex qRT-PCR assay also included previously published NSP3 qRT-PCR for rotavirus detection and Rotarix® NSP2 and RotaTeq® VP6 qRT-PCRs for detection of Rotarix® and RotaTeq® vaccine strains respectively. The multiplex qRT-PCR assay was validated using 853 sequence confirmed stool samples and 24 lab cultured strains of different rotavirus genotypes. By using thermostable rTth polymerase enzyme, dsRNA denaturation, reverse transcription (RT) and amplification (PCR) steps were performed in single tube by uninterrupted thermocycling profile to reduce chances of sample cross contamination and for rapid generation of results. For quantification, standard curves were generated using dsRNA transcripts derived from RVA gene segments. Results. The VP7 qRT-PCRs exhibited 98.8–100% sensitivity, 99.7–100% specificity, 85–95% efficiency and a limit of detection of 4–60 copies per singleplex reaction. The VP7 qRT-PCRs exhibited 81–92% efficiency and limit of detection of 150–600 copies in multiplex reactions. The VP4 qRT-PCRs exhibited 98.8�

Study on the Image Quality Comparison between in Digital RT and Film RT

International Nuclear Information System (INIS)

Park, Sang Ki; Ahn, Yean Shik; Gil, Doo Song

2011-01-01

Conventional film radiographic test has been generally and widely used in the inspection on the weldment for quality assurance. On the other hand, since the analog RT is well known for typical time and cost consuming method with complex process of inspection, the industry has researched various ways how to improve radiographic test technology. In this study, we verified the fact that digital RT provides a lot more benefit in effectively detecting defects, ever film details, through digital processing of image enhancement, compared to film RT. As a result, we reached conclusion that digital RT is positively able to replace the film RT in industry in part or in whole

GNSS global real-time augmentation positioning: Real-time precise satellite clock estimation, prototype system construction and performance analysis

Science.gov (United States)

Chen, Liang; Zhao, Qile; Hu, Zhigang; Jiang, Xinyuan; Geng, Changjiang; Ge, Maorong; Shi, Chuang

2018-01-01

Lots of ambiguities in un-differenced (UD) model lead to lower calculation efficiency, which isn't appropriate for the high-frequency real-time GNSS clock estimation, like 1 Hz. Mixed differenced model fusing UD pseudo-range and epoch-differenced (ED) phase observations has been introduced into real-time clock estimation. In this contribution, we extend the mixed differenced model for realizing multi-GNSS real-time clock high-frequency updating and a rigorous comparison and analysis on same conditions are performed to achieve the best real-time clock estimation performance taking the efficiency, accuracy, consistency and reliability into consideration. Based on the multi-GNSS real-time data streams provided by multi-GNSS Experiment (MGEX) and Wuhan University, GPS + BeiDou + Galileo global real-time augmentation positioning prototype system is designed and constructed, including real-time precise orbit determination, real-time precise clock estimation, real-time Precise Point Positioning (RT-PPP) and real-time Standard Point Positioning (RT-SPP). The statistical analysis of the 6 h-predicted real-time orbits shows that the root mean square (RMS) in radial direction is about 1-5 cm for GPS, Beidou MEO and Galileo satellites and about 10 cm for Beidou GEO and IGSO satellites. Using the mixed differenced estimation model, the prototype system can realize high-efficient real-time satellite absolute clock estimation with no constant clock-bias and can be used for high-frequency augmentation message updating (such as 1 Hz). The real-time augmentation message signal-in-space ranging error (SISRE), a comprehensive accuracy of orbit and clock and effecting the users' actual positioning performance, is introduced to evaluate and analyze the performance of GPS + BeiDou + Galileo global real-time augmentation positioning system. The statistical analysis of real-time augmentation message SISRE is about 4-7 cm for GPS, whlile 10 cm for Beidou IGSO/MEO, Galileo and about 30 cm

Monitor of dynamic parameters in real time; Monitor de parametros dinamicos en tiempo real

Energy Technology Data Exchange (ETDEWEB)

Rojas S, A.S.; Ruiz E, J.A. [ININ, 52750 La Marquesa, Estado de Mexico (Mexico)

2008-07-01

In the complex physical systems exist parameters that are necessary for monitoring in real time. In the nuclear industry, particularly in a reactor this surveillance is important, where the times of the reactions are almost instantaneous. Although many of these parameters are monitored, given the advance of the computer systems the monitoring could either be enlarged direct or indirect of other parameters. The analysis of the neutron noise in the nuclear reactors, plays an important role, the noise signal it contains information about the operation conditions of a system, when analyzing it with analysis methodologies of analogical signals to provide important information for the early detection of possible flaws and to indicate the permissible operation levels. To show the characteristics of the operation of the system of Monitoring of Dynamic Parameters in Real Time, oscillations of neutron noise of the TRIGA Mark III of the ININ were analyzed, these were caused with the control bar to a power of 10 Watts, the oscillations were carried out to a frequency of 1Hz, signal of low frequency. In this work a virtual instrument that allows by means of the spectral analysis method in frequency point by point is presented, to indicate in real time periodic variations that could be presented in the neutron noise signal, visualizing in advance the dynamic behavior of the system or nuclear plant. Another of the tests of the monitoring system presented is that of the oscillatory event happened in the reactor of Laguna Verde Nucleo electric Central, would be convenient to have an instrument of surveillance for monitoring through the neutron noise signal the behavior of some important parameter to predict and to indicate in an immediate way an abnormal condition in the reactor operation or in the plant system. These parameters can be the power, the recirculation water flow, etc. The monitor is based on a personal computer (PC), a data acquisition card (ADC) and a computer program

Analytical and clinical performance of the CDC real time RT-PCR assay for detection and typing of dengue virus.

Science.gov (United States)

Santiago, Gilberto A; Vergne, Edgardo; Quiles, Yashira; Cosme, Joan; Vazquez, Jesus; Medina, Juan F; Medina, Freddy; Colón, Candimar; Margolis, Harold; Muñoz-Jordán, Jorge L

2013-01-01

Dengue is an acute illness caused by the positive-strand RNA dengue virus (DENV). There are four genetically distinct DENVs (DENV-1-4) that cause disease in tropical and subtropical countries. Most patients are viremic when they present with symptoms; therefore, RT-PCR has been increasingly used in dengue diagnosis. The CDC DENV-1-4 RT-PCR Assay has been developed as an in-vitro diagnostic platform and was recently approved by the US Food and Drug Administration (FDA) for detection of dengue in patients with signs or symptoms of mild or severe dengue. The primers and probes of this test have been designed to detect currently circulating strains of DENV-1-4 from around the world at comparable sensitivity. In a retrospective study with 102 dengue cases confirmed by IgM anti-DENV seroconversion in the convalescent sample, the RT-PCR Assay detected DENV RNA in 98.04% of the paired acute samples. Using sequencing as a positive indicator, the RT-PCR Assay had a 97.92% positive agreement in 86 suspected dengue patients with a single acute serum sample. After extensive validations, the RT-PCR Assay performance was highly reproducible when evaluated across three independent testing sites, did not produce false positive results for etiologic agents of other febrile illnesses, and was not affected by pathological levels of potentially interfering biomolecules. These results indicate that the CDC DENV-1-4 RT-PCR Assay provides a reliable diagnostic platform capable for confirming dengue in suspected cases.

SASqPCR: robust and rapid analysis of RT-qPCR data in SAS.

Directory of Open Access Journals (Sweden)

Daijun Ling

Full Text Available Reverse transcription quantitative real-time PCR (RT-qPCR is a key method for measurement of relative gene expression. Analysis of RT-qPCR data requires many iterative computations for data normalization and analytical optimization. Currently no computer program for RT-qPCR data analysis is suitable for analytical optimization and user-controllable customization based on data quality, experimental design as well as specific research aims. Here I introduce an all-in-one computer program, SASqPCR, for robust and rapid analysis of RT-qPCR data in SAS. This program has multiple macros for assessment of PCR efficiencies, validation of reference genes, optimization of data normalizers, normalization of confounding variations across samples, and statistical comparison of target gene expression in parallel samples. Users can simply change the macro variables to test various analytical strategies, optimize results and customize the analytical processes. In addition, it is highly automatic and functionally extendable. Thus users are the actual decision-makers controlling RT-qPCR data analyses. SASqPCR and its tutorial are freely available at http://code.google.com/p/sasqpcr/downloads/list.

Selection of reference genes for RT-qPCR analysis in the monarch butterfly, Danaus plexippus (L.), a migrating bio-indicator

Science.gov (United States)

Quantitative real-time PCR (qRT-PCR) is a reliable and reproducible technique for measuring and evaluating changes in gene expression. To facilitate gene expression studies and obtain more accurate qRT-PCR data, normalization relative to stable housekeeping genes is required. In this study, expres...

Métodos tiempo-frecuencia basados en la transformada wavelet

Directory of Open Access Journals (Sweden)

Eduardo P. Serrano

2012-07-01

Full Text Available La información contenida en una señal analógica se evidencia por su representación numérica. El par de Fourier en dos representaciones complementarias explicita las estructuras temporales y frecuenciales. Para detectar y caracterizar eventos que combinan esas estructuras en diversos y complejos patrones es necesario implementar métodos más refinados de representación conjunta tiempo-frecuencia. Entre diversas opciones, la transformada wavelet (en onditas u ondaletas brinda una eficiente herramienta tiempo-escala. Sus extensiones conducen a apropiadas representaciones conjuntas en un unico contexto analítico permiten implementar estrategias flexibles y bien adaptadas a las características de la señal. Palabras clave: representaciones tiempo-frecuencia, transformada wavelet, análisis de multirresolución, paquetes de wavelets, frecuencia instantánea. Mathematics Subject Classification: 42C40, 44A05.

Analytical and clinical performance of the CDC real time RT-PCR assay for detection and typing of dengue virus.

Directory of Open Access Journals (Sweden)

Gilberto A Santiago

Full Text Available Dengue is an acute illness caused by the positive-strand RNA dengue virus (DENV. There are four genetically distinct DENVs (DENV-1-4 that cause disease in tropical and subtropical countries. Most patients are viremic when they present with symptoms; therefore, RT-PCR has been increasingly used in dengue diagnosis. The CDC DENV-1-4 RT-PCR Assay has been developed as an in-vitro diagnostic platform and was recently approved by the US Food and Drug Administration (FDA for detection of dengue in patients with signs or symptoms of mild or severe dengue. The primers and probes of this test have been designed to detect currently circulating strains of DENV-1-4 from around the world at comparable sensitivity. In a retrospective study with 102 dengue cases confirmed by IgM anti-DENV seroconversion in the convalescent sample, the RT-PCR Assay detected DENV RNA in 98.04% of the paired acute samples. Using sequencing as a positive indicator, the RT-PCR Assay had a 97.92% positive agreement in 86 suspected dengue patients with a single acute serum sample. After extensive validations, the RT-PCR Assay performance was highly reproducible when evaluated across three independent testing sites, did not produce false positive results for etiologic agents of other febrile illnesses, and was not affected by pathological levels of potentially interfering biomolecules. These results indicate that the CDC DENV-1-4 RT-PCR Assay provides a reliable diagnostic platform capable for confirming dengue in suspected cases.

SMAP Data Assimilation at NASA SPoRT

Science.gov (United States)

Blankenship, Clay B.; Case, Jonathan L.; Zavodsky, Bradley T.

2016-01-01

The NASA Short-Term Prediction Research and Transition (SPoRT) Center maintains a near-real- time run of the Noah Land Surface Model within the Land Information System (LIS) at 3-km resolution. Soil moisture products from this model are used by several NOAA/National Weather Service Weather Forecast Offices for flood and drought situational awareness. We have implemented assimilation of soil moisture retrievals from the Soil Moisture Ocean Salinity (SMOS) and Soil Moisture Active/ Passive (SMAP) satellites, and are now evaluating the SMAP assimilation. The SMAP-enhanced LIS product is planned for public release by October 2016.

Prospective comparison of the detection rates of human enterovirus and parechovirus RT-qPCR and viral culture in different pediatric specimens

NARCIS (Netherlands)

de Crom, S C M; Obihara, C C; de Moor, R A; Veldkamp, E J M; van Furth, A M; Rossen, J W A

2013-01-01

BACKGROUND: Reverse-transcriptase quantitative real-time polymerase chain reaction (RT-qPCR) has become the gold standard for the diagnosis of human enterovirus (EV) and parechovirus (HPeV) infections. The detection rate of RT-qPCR in different pediatric body specimens has not been compared

A one-step, triplex, real-time RT-PCR assay for the simultaneous detection of enterovirus 71, coxsackie A16 and pan-enterovirus in a single tube.

Directory of Open Access Journals (Sweden)

Shiyin Zhang

Full Text Available The recent, ongoing epidemic of hand, foot, and mouth disease (HFMD, which is caused by enterovirus infection, has affected millions of children and resulted in thousands of deaths in China. Enterovirus 71 (EV71 and coxsackie A16 (CA16 are the two major distinct pathogens for HFMD. However, EV71 is more commonly associated with neurologic complications and even fatalities. Therefore, simultaneously detecting and differentiating EV71 and CA16 specifically from other enteroviruses for diagnosing HFMD is important. Here, we developed a one-step, triplex, real-time RT-PCR assay for the simultaneous detection of EV71, CA16, and pan-enterovirus (EVs in a single tube with an internal amplification control. The detection results for the serially diluted viruses indicate that the lower limit of detection for this assay is 0.001-0.04 TCID50/ml, 0.02 TCID50/ml, and 0.001 TCID50/ml for EVs, EV71, and CA16, respectively. After evaluating known HFMD virus stocks of 17 strains of 16 different serotypes, this assay showed a favorable detection spectrum and no obvious cross-reactivity. The results for 141 clinical throat swabs from HFMD-suspected patients demonstrated sensitivities of 98.4%, 98.7%, and 100% for EVs, EV71, and CA16, respectively, and 100% specificity for each virus. The application of this one-step, triplex, real-time RT-PCR assay in clinical units will contribute to HFMD surveillance and help to identify causative pathogen in patients with suspected HFMD.

A one-step, triplex, real-time RT-PCR assay for the simultaneous detection of enterovirus 71, coxsackie A16 and pan-enterovirus in a single tube.

Science.gov (United States)

Zhang, Shiyin; Wang, Jin; Yan, Qiang; He, Shuizhen; Zhou, Wenbin; Ge, Shengxiang; Xia, Ningshao

2014-01-01

The recent, ongoing epidemic of hand, foot, and mouth disease (HFMD), which is caused by enterovirus infection, has affected millions of children and resulted in thousands of deaths in China. Enterovirus 71 (EV71) and coxsackie A16 (CA16) are the two major distinct pathogens for HFMD. However, EV71 is more commonly associated with neurologic complications and even fatalities. Therefore, simultaneously detecting and differentiating EV71 and CA16 specifically from other enteroviruses for diagnosing HFMD is important. Here, we developed a one-step, triplex, real-time RT-PCR assay for the simultaneous detection of EV71, CA16, and pan-enterovirus (EVs) in a single tube with an internal amplification control. The detection results for the serially diluted viruses indicate that the lower limit of detection for this assay is 0.001-0.04 TCID50/ml, 0.02 TCID50/ml, and 0.001 TCID50/ml for EVs, EV71, and CA16, respectively. After evaluating known HFMD virus stocks of 17 strains of 16 different serotypes, this assay showed a favorable detection spectrum and no obvious cross-reactivity. The results for 141 clinical throat swabs from HFMD-suspected patients demonstrated sensitivities of 98.4%, 98.7%, and 100% for EVs, EV71, and CA16, respectively, and 100% specificity for each virus. The application of this one-step, triplex, real-time RT-PCR assay in clinical units will contribute to HFMD surveillance and help to identify causative pathogen in patients with suspected HFMD.

Trombosis de válvulas cardiacas biológicas. Presentación de dos casos evaluados con ecocardiografía 3D en tiempo real Thrombosis of biological valves. Report of two cases evaluated by 3D echocardiography in real time

Directory of Open Access Journals (Sweden)

Jairo A Rendón

2011-10-01

Full Text Available La trombosis de las válvulas protésicas biológicas es una complicación infrecuente, que se asocia con mortalidad elevada. En este artículo se reporta el caso de un paciente de género masculino, de 72 años de edad, con prótesis valvular biológica en posición aórtica y trombosis asociada a degeneración valvular, así como el de una paciente de género femenino de 64 años de edad, con prótesis biológica en posición mitral y trombosis de la misma en el contexto de una infección sistémica. Ambos casos se evaluaron mediante ecocardiografía transesofágica tridimensional en tiempo real.Thrombosis of biological prosthetic valves is a rare complication, associated with high mortality. We report the case of a 72 years old male patient with biological valve prosthesis in the aortic position and thrombosis associated with valvular degeneration, as well as that of a 64 years old female patient with bioprosthesis in the mitral position and thrombosis of it in the context of a systemic infection. Both cases were evaluated by three-dimensional transesophageal echocardiography in real time.

Development of single-step multiplex real-time RT-PCR assays for rapid diagnosis of enterovirus 71, coxsackievirus A6, and A16 in patients with hand, foot, and mouth disease.

Science.gov (United States)

Puenpa, Jiratchaya; Suwannakarn, Kamol; Chansaenroj, Jira; Vongpunsawad, Sompong; Poovorawan, Yong

2017-10-01

Real-time reverse-transcription polymerase chain reaction (rRT-PCR) to detect enterovirus 71 (EV-A71) and coxsackievirus A16 (CV-A16) has facilitated the rapid and accurate identification of the two most common etiological agents underlying hand, foot, and mouth disease (HFMD). However, the worldwide emergence of CV-A6 infection in HFMD necessitates development of an improved multiplex rRT-PCR method. To rapidly determine the etiology of HFMD, two rRT-PCR assays using TaqMan probes were developed to differentiate among three selected common enteroviruses (EV-A71, CV-A16 and CV-A6) and to enable broad detection of enteroviruses (pan-enterovirus assay). No cross-reactions were observed with other RNA viruses examined. The detection limits of both assays were 10 copies per microliter for EV-A71, CV-A6 and CV-A16, and pan-enterovirus. The methods showed high accuracy (EV-A71, 90.6%; CV-A6, 92.0%; CV-A16, 100%), sensitivity (EV-A71, 96.5%; CV-A6, 95.8%; CV-A16, 99.0%), and specificity (EV-A71, 100%; CV-A6, 99.9%; CV-A16, 99.9%) in testing clinical specimens (n=1049) during 2014-2016, superior to those of conventional RT-PCR. Overall, the multiplex rRT-PCR assays enabled highly sensitive detection and rapid simultaneous typing of EV-A71, CV-A6 and CV-A16, and enteroviruses, rendering them feasible and attractive methods for large-scale surveillance of enteroviruses associated with HFMD outbreaks. Copyright © 2017 Elsevier B.V. All rights reserved.

Rapid and sensitive detection of canine distemper virus by real-time reverse transcription recombinase polymerase amplification.

Science.gov (United States)

Wang, Jianchang; Wang, Jinfeng; Li, Ruiwen; Liu, Libing; Yuan, Wanzhe

2017-08-15

Canine distemper, caused by Canine distemper virus (CDV), is a highly contagious and fatal systemic disease in free-living and captive carnivores worldwide. Recombinase polymerase amplification (RPA), as an isothermal gene amplification technique, has been explored for the molecular detection of diverse pathogens. A real-time reverse transcription RPA (RT-RPA) assay for the detection of canine distemper virus (CDV) using primers and exo probe targeting the CDV nucleocapsid protein gene was developed. A series of other viruses were tested by the RT-RPA.Thirty-two field samples were further tested by RT-RPA, and the resuts were compared with those obtained by the real-time RT-PCR. The RT-RPA assay was performed successfully at 40 °C, and the results were obtained within 3 min-12 min. The assay could detect CDV, but did not show cross-detection of canine parvovirus-2 (CPV-2), canine coronavirus (CCoV), canine parainfluenza virus (CPIV), pseudorabies virus (PRV) or Newcastle disease virus (NDV), demonstrating high specificity. The analytical sensitivity of RT-RPA was 31.8 copies in vitro transcribed CDV RNA, which is 10 times lower than the real-time RT-PCR. The assay performance was validated by testing 32 field samples and compared to real-time RT-PCR. The results indicated an excellent correlation between RT-RPA and a reference real-time RT-PCR method. Both assays provided the same results, and R 2 value of the positive results was 0.947. The results demonstrated that the RT-RPA assay offers an alternative tool for simple, rapid, and reliable detection of CDV both in the laboratory and point-of-care facility, especially in the resource-limited settings.

An Experimental Evaluation of Real-Time DVFS Scheduling Algorithms

OpenAIRE

Saha, Sonal

2011-01-01

Dynamic voltage and frequency scaling (DVFS) is an extensively studied energy manage- ment technique, which aims to reduce the energy consumption of computing platforms by dynamically scaling the CPU frequency. Real-Time DVFS (RT-DVFS) is a branch of DVFS, which reduces CPU energy consumption through DVFS, while at the same time ensures that task time constraints are satisfied by constructing appropriate real-time task schedules. The literature presents numerous RT-DVFS schedul...

[Reseña: La temporalidad estremecida] Araújo, A. (2013. Todos los tiempos, el tiempo. Montevideo: Psicolibros

Directory of Open Access Journals (Sweden)

Ana Luisa Hounie

2014-05-01

Full Text Available Corrientes muy diversas del pensamiento que procuran dar luz al problema de la percepción humana de la experiencia del mundo (desde Wilfrid Sellars (1962 a Edgar Morin (2001 -por situar dos filósofos que se encuentran en el origen de concepciones epistemológicas bien distintas- coinciden en un punto: de lo que se trata es de entender de qué forma las cosas, en el sentido más amplio posible, se componen juntas. El texto de Ana María Araújo fortifica esta idea doblemente, pues esta composición resulta precisamente el fundamento epistémico que le da lugar y al mismo tiempo el principio que sostiene el riguroso método que lo hace posible. En otras palabras, desde el comienzo hasta el final, la autora produce una respuesta en acto a la pregunta por el tiempo que guía su inquietud investigativa.

La noción del tiempo en la cultura maya prehispánica

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Alexander Wolfgang Voss

2015-07-01

Full Text Available La concepción del tiempo de los mayas prehispánicos se estudia mediante el análisis epigráfico y filológico de textos jeroglíficos bajo los planteamientos teóricos de la escuela italiana de historia de las religiones. Los datos indican que el tiempo es animado y formado por unidades discretas tangibles que se representan con un calendario de 365 días. Las características de cada día son fijadas por un oráculo de suertes de 260 unidades que es proyectado sobre el tiempo. El tiempo y el oráculo son pensados como dioses que se alternan en un orden y no como una magnitud física abstracta.

Real Time Conference 2016 Overview

Science.gov (United States)

Luchetta, Adriano

2017-06-01

This is a special issue of the IEEE Transactions on Nuclear Science containing papers from the invited, oral, and poster presentation of the 20th Real Time Conference (RT2016). The conference was held June 6-10, 2016, at Centro Congressi Padova “A. Luciani,” Padova, Italy, and was organized by Consorzio RFX (CNR, ENEA, INFN, Università di Padova, Acciaierie Venete SpA) and the Istituto Nazionale di Fisica Nucleare. The Real Time Conference is multidisciplinary and focuses on the latest developments in real-time techniques in high-energy physics, nuclear physics, astrophysics and astroparticle physics, nuclear fusion, medical physics, space instrumentation, nuclear power instrumentation, general radiation instrumentation, and real-time security and safety. Taking place every second year, it is sponsored by the Computer Application in Nuclear and Plasma Sciences technical committee of the IEEE Nuclear and Plasma Sciences Society. RT2016 attracted more than 240 registrants, with a large proportion of young researchers and engineers. It had an attendance of 67 students from many countries.

Performance of nested RT-PCR on CSF for tuberculous meningitis diagnosis in HIV-infected patients.

Science.gov (United States)

Gualberto, F A S; Gonçalves, M G; Fukasawa, L O; Santos, A M Ramos Dos; Sacchi, C T; Harrison, L H; Boulware, D R; Vidal, J E

2017-10-01

Timely diagnosis of tuberculous meningitis (TBM) in patients with human immunodeficiency virus (HIV) infection remains a challenge. Despite the current scale-up of the Xpert® MTB/RIF assay, other molecular diagnostic tools are necessary, particularly in referral centres in low- and middle-income countries without Xpert testing. To determine the diagnostic performance of nested real-time polymerase chain reaction (nRT-PCR) in HIV-infected TBM patients categorised according to standardised clinical case definitions. Based on clinical, laboratory and imaging data, HIV-infected patients with suspected TBM were prospectively categorised as 'definite TBM', 'probable TBM', 'possible TBM' or 'not TBM'. We evaluated nRT-PCR sensitivity and specificity in diagnosing TBM among definite TBM cases, and among definite + probable TBM cases. Ninety-two participants were enrolled in the study. nRT-PCR sensitivity for definite TBM (n = 8) was 100% (95%CI 67-100) and 86% (95%CI 60-96) for both definite and probable TBM (n = 6). Assuming that 'not TBM' patients (n = 74) were true-negatives, nRT-PCR specificity was 100% (95%CI 95-100). The possible TBM group (n = 4) had no nRT-PCR positives. The nRT-PCR is a useful rule-in test for HIV-infected patients with TBM according to international consensus case definitions. As nRT-PCR cannot exclude TBM, studies comparing and combining nRT-PCR with other assays are necessary for a rule-out test.

Monitoring and improving the sensitivity of dengue nested RT-PCR used in longitudinal surveillance in Thailand.

Science.gov (United States)

Klungthong, Chonticha; Manasatienkij, Wudtichai; Phonpakobsin, Thipwipha; Chinnawirotpisan, Piyawan; Rodpradit, Prinyada; Hussem, Kittinun; Thaisomboonsuk, Butsaya; Ong-ajchaowlerd, Prapapun; Nisalak, Ananda; Kalayanarooj, Siripen; Buddhari, Darunee; Gibbons, Robert V; Jarman, Richard G; Yoon, In-Kyu; Fernandez, Stefan

2015-02-01

AFRIMS longitudinal dengue surveillance in Thailand depends on the nested RT-PCR and the dengue IgM/IgG ELISA. To examine and improve the sensitivity of the nested RT-PCR using a panel of archived samples collected during dengue surveillance. A retrospective analysis of 16,454 dengue IgM/IgG ELISA positive cases collected between 2000 and 2013 was done to investigate the sensitivity of the nested RT-PCR. From these cases, 318 acute serum specimens or extracted RNA, previously found to be negative by the nested RT-PCR, were tested using TaqMan real-time RT-PCR (TaqMan rRT-PCR). To improve the sensitivity of nested RT-PCR, we designed a new primer based on nucleotide sequences from contemporary strains found to be positive by the TaqMan rRT-PCR. Sensitivity of the new nested PCR was calculated using a panel of 87 samples collected during 2011-2013. The percentage of dengue IgM/IgG ELISA positive cases that were negative by the nested RT-PCR varied from 17% to 42% for all serotypes depending on the year. Using TaqMan rRT-PCR, dengue RNA was detected in 194 (61%) of the 318 acute sera or extracted RNA previously found to be negative by the nested RT-PCR. The newly designed DENV-1 specific primer increased the sensitivity of DENV-1 detection by the nested RT-PCR from 48% to 88%, and of all 4 serotypes from 73% to 87%. These findings demonstrate the impact of genetic diversity and signal erosion on the sensitivity of PCR-based methods. Published by Elsevier B.V.

OPTIMIZACION DE LA GESTION DE LAS OPERACIONES EN TIEMPO REAL EN LA INDUSTRIA FORESTAL: MODELOS, ALGORITMOS Y PROCEDIMIENTOS

OpenAIRE

EPSTEIN NUMHAUSER, RAFAEL DAVID

2013-01-01

La tendencia mundial en la gestión de las operaciones ha privilegiado el concepto producción "justo a tiempo" (o JIT por su sigla en inglés). El JIT fue incorporado por los japoneses en la industria manufacturera en los años 70's, específicamente en la fábrica de autos Toyota, siendo uno de los pilares del éxito japonés de la posguerra y de la recuperación de la industria norteamericana en este decenio. La filosofía JIT postula que el diseño estratégico de las operaciones debe pri...

Modified Polyadenylation-Based RT-qPCR Increases Selectivity of Amplification of 3′-MicroRNA Isoforms

Directory of Open Access Journals (Sweden)

Charlotte Nejad

2018-01-01

Full Text Available MicroRNA (miRNA detection by reverse transcription (RT quantitative real-time PCR (RT-qPCR is the most popular method currently used to measure miRNA expression. Although the majority of miRNA families are constituted of several 3′-end length variants (“isomiRs”, little attention has been paid to their differential detection by RT-qPCR. However, recent evidence indicates that 3′-end miRNA isoforms can exhibit 3′-length specific regulatory functions, underlining the need to develop strategies to differentiate 3′-isomiRs by RT-qPCR approaches. We demonstrate here that polyadenylation-based RT-qPCR strategies targeted to 20–21 nt isoforms amplify entire miRNA families, but that primers targeted to >22 nt isoforms were specific to >21 nt isoforms. Based on this observation, we developed a simple method to increase selectivity of polyadenylation-based RT-qPCR assays toward shorter isoforms, and demonstrate its capacity to help distinguish short RNAs from longer ones, using synthetic RNAs and biological samples with altered isomiR stoichiometry. Our approach can be adapted to many polyadenylation-based RT-qPCR technologies already exiting, providing a convenient way to distinguish long and short 3′-isomiRs.

Canine distemper virus detection by different methods of One-Step RT-qPCR

Directory of Open Access Journals (Sweden)

Claudia de Camargo Tozato

2016-01-01

Full Text Available ABSTRACT: Three commercial kits of One-Step RT-qPCR were evaluated for the molecular diagnosis of Canine Distemper Virus. Using the kit that showed better performance, two systems of Real-time RT-PCR (RT-qPCR assays were tested and compared for analytical sensitivity to Canine Distemper Virus RNA detection: a One-Step RT-qPCR (system A and a One-Step RT-qPCR combined with NESTED-qPCR (system B. Limits of detection for both systems were determined using a serial dilution of Canine Distemper Virus synthetic RNA or a positive urine sample. In addition, the same urine sample was tested using samples with prior centrifugation or ultracentrifugation. Commercial kits of One-Step RT-qPCR assays detected canine distemper virus RNA in 10 (100% urine samples from symptomatic animals tested. The One-Step RT-qPCR kit that showed better results was used to evaluate the analytical sensitivity of the A and B systems. Limit of detection using synthetic RNA for the system A was 11 RNA copies µL-1 and 110 RNA copies µl-1 for first round System B. The second round of the NESTED-qPCR for System B had a limit of detection of 11 copies µl-1. Relationship between Ct values and RNA concentration was linear. The RNA extracted from the urine dilutions was detected in dilutions of 10-3 and10-2 by System A and B respectively. Urine centrifugation increased the analytical sensitivity of the test and proved to be useful for routine diagnostics. The One-Step RT-qPCR is a fast, sensitive and specific method for canine distemper routine diagnosis and research projects that require sensitive and quantitative methodology.

Outcome on EPIZONE Extension on VER/ VNN: Diagnostics, proficiency test and qRT-PCR validation

DEFF Research Database (Denmark)

Bigarré, Laurent; Panzarin, Valentina; Baud, Marine

2012-01-01

1 is to bring valuable genetic information on the second genome component of a given isolate. ANSES has developed new DNA probes targeting RNA1 with the goal of detecting all genotypes of nodaviruses. The aim of the project is thus: - To organize, conduct and report an inter-laboratory proficiency...... test for detection of aquatic nodaviruses by real time RT-PCR targeting RNA1 and RNA2, respectively. - To test a newly developed real-time RT-PCR targeting RNA1: sensitivity, specificity, range of detection and genetic information provided by sequencing the PCR product. Materials & methods Primers...... to be extracted by each partner. In the meantime, ANSES produced and distributed RNA extracted from healthy or infected fish (2 genogroups), or cell culture; one sample from cell culture had to be serially diluted to test the sensitivity of each method in partners’ hands. Samples were tested in duplicates...

A real time Taqman RT-PCR for the detection of rabbit hemorrhagic disease virus 2 (RHDV2).

Science.gov (United States)

Duarte, Margarida Dias; Carvalho, Carina L; Barros, Silvia C; Henriques, Ana M; Ramos, Fernanda; Fagulha, Teresa; Luís, Tiago; Duarte, Elsa L; Fevereiro, Miguel

2015-07-01

A specific real time RT-PCR for the detection of RHDV2 was developed and validated using RHDV and RHDV2 RNA preparations from positive field samples. The system was designed to amplify a 127 nucleotide-long RNA region located within the vp60 gene, based on the alignment of six sequences originated in Portugal, obtained in our laboratory, and 11 sequences from France and Italy. The primers and probe target sequences are highly conserved in the vast majority of the RHDV2 sequences presently known. In the sequences showing variability, only one mismatch is found per strain, usually outlying the 3' end of the primer or probe hybridization sequences. The specificity of the method was demonstrated in vitro with a panel of common rabbit pathogens. Standardization was performed with RNA transcripts obtained from a recombinant plasmid harboring the target sequence. The method was able to detected nine RNA molecules with an efficiency of 99.4% and a R(2) value of 1. Repeatability and reproducibility of the method were very high, with coefficients of variation lower than 2.40%. The assay was proven a valuable tool to diagnose most of RDVH2 circulating strains, and may be also useful to monitor viral loads, and consequently, disease progression and vaccination efficacy. Copyright © 2015 Elsevier B.V. All rights reserved.

Pandemic preparedness in Hawaii: a multicenter verification of real-time RT-PCR for the direct detection of influenza virus types A and B.

Science.gov (United States)

Whelen, A Christian; Bankowski, Matthew J; Furuya, Glenn; Honda, Stacey; Ueki, Robert; Chan, Amelia; Higa, Karen; Kumashiro, Diane; Moore, Nathaniel; Lee, Roland; Koyamatsu, Terrie; Effler, Paul V

2010-01-01

We integrated multicenter, real-time (RTi) reverse transcription polymerase chain reaction (RT-PCR) screening into a statewide laboratory algorithm for influenza surveillance and response. Each of three sites developed its own testing strategy and was challenged with one randomized and blinded panel of 50 specimens previously tested for respiratory viruses. Following testing, each participating laboratory reported its results to the Hawaii State Department of Health, State Laboratories Division for evaluation and possible discrepant analysis. Two of three laboratories reported a 100% sensitivity and specificity, resulting in a 100% positive predictive value and a 100% negative predictive value (NPV) for influenza type A. The third laboratory showed a 71% sensitivity for influenza type A (83% NPV) with 100% specificity. All three laboratories were 100% sensitive and specific for the detection of influenza type B. Discrepant analysis indicated that the lack of sensitivity experienced by the third laboratory may have been due to the analyte-specific reagent probe used by that laboratory. Use of a newer version of the product with a secondary panel of 20 specimens resulted in a sensitivity and specificity of 100%. All three laboratories successfully verified their ability to conduct clinical testing for influenza using diverse nucleic acid extraction and RTi RT-PCR platforms. Successful completion of the verification by all collaborating laboratories paved the way for the integration of those facilities into a statewide laboratory algorithm for influenza surveillance and response.

ANÁLISIS EMPÍRICO A LA RESOLUCIÓN DEL ENIGMA DEL TIEMPO

Directory of Open Access Journals (Sweden)

ALFRED DIESTIG

2009-12-01

Full Text Available Muchos creen que el tiempo discurre de manera continua, pero la ciencia moderna ha descubierto que la realidad puede ser mucho más compleja, y que el viaje por el tiempo tal vez sea físicamente posible. Si según los principios abstractos de la física es posible viajar a través del tiempo, ¿cómo puede conseguirse? Quizás algún día las súper densas estrellas de neutrones permitirán a los viajeros del espacio trasladarse hacia el pasado. Muchos hombres de ciencia están de acuerdo en que sólo podremos entender el mundo físico si estamos dispuestos a renunciar a muchas de nuestras ideas acerca de la naturaleza del tiempo. Las huidas al pasado parecen indicar que realmente éste siempre nos acompaña, que existe a un nivel al que todas las personas psíquicamente influenciables pueden acceder, ¿cuáles son las implicaciones de esta fascinante idea?

Development and evaluation of a real-time one step Reverse-Transcriptase PCR for quantitation of Chandipura Virus

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Tandale Babasaheb V

2008-12-01

Full Text Available Abstract Background Chandipura virus (CHPV, a member of family Rhabdoviridae was attributed to an explosive outbreak of acute encephalitis in children in Andhra Pradesh, India in 2003 and a small outbreak among tribal children from Gujarat, Western India in 2004. The case-fatality rate ranged from 55–75%. Considering the rapid progression of the disease and high mortality, a highly sensitive method for quantifying CHPV RNA by real-time one step reverse transcriptase PCR (real-time one step RT-PCR using TaqMan technology was developed for rapid diagnosis. Methods Primers and probe for P gene were designed and used to standardize real-time one step RT-PCR assay for CHPV RNA quantitation. Standard RNA was prepared by PCR amplification, TA cloning and run off transcription. The optimized real-time one step RT-PCR assay was compared with the diagnostic nested RT-PCR and different virus isolation systems [in vivo (mice in ovo (eggs, in vitro (Vero E6, PS, RD and Sand fly cell line] for the detection of CHPV. Sensitivity and specificity of real-time one step RT-PCR assay was evaluated with diagnostic nested RT-PCR, which is considered as a gold standard. Results Real-time one step RT-PCR was optimized using in vitro transcribed (IVT RNA. Standard curve showed linear relationship for wide range of 102-1010 (r2 = 0.99 with maximum Coefficient of variation (CV = 5.91% for IVT RNA. The newly developed real-time RT-PCR was at par with nested RT-PCR in sensitivity and superior to cell lines and other living systems (embryonated eggs and infant mice used for the isolation of the virus. Detection limit of real-time one step RT-PCR and nested RT-PCR was found to be 1.2 × 100 PFU/ml. RD cells, sand fly cells, infant mice, and embryonated eggs showed almost equal sensitivity (1.2 × 102 PFU/ml. Vero and PS cell-lines (1.2 × 103 PFU/ml were least sensitive to CHPV infection. Specificity of the assay was found to be 100% when RNA from other viruses or healthy

Sensitive detection of novel Indian isolate of BTV 21 using ns1 gene based real-time PCR assay

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Gaya Prasad

2013-06-01

Full Text Available Aim: The study was conducted to develop ns1 gene based sensitive real-time RT-PCR assay for diagnosis of India isolates of bluetongue virus (BTV. Materials and Methods: The BTV serotype 21 isolate (KMNO7 was isolated from Andhra Pradesh and propagated in BHK-21 cell line in our laboratory. The Nucleic acid (dsRNA of virus was extracted using Trizol method and cDNA was prepared using a standard protocol. The cDNA was allowed to ns1 gene based group specific PCR to confirm the isolate as BTV. The viral RNA was diluted 10 folds and the detection limit of ns1 gene based RT-PCR was determined. Finally the tenfold diluted viral RNA was subjected to real-time RT-PCR using ns1 gene primer and Taq man probe to standardized the reaction and determine the detection limit. Results: The ns1 gene based group specific PCR showed a single 366bp amplicon in agarose gel electrophoresis confirmed the sample as BTV. The ns1 gene RT-PCR using tenfold diluted viral RNA showed the detection limit of 70.0 fg in 1%agarose gel electrophoresis. The ns1 gene based real time RT-PCR was successfully standardized and the detection limit was found to be 7.0 fg. Conclusion: The ns1 gene based real-time RT-PCR was successfully standardized and it was found to be 10 times more sensitive than conventional RT-PCR. Key words: bluetongue, BTV21, RT-PCR, Real time RT-PCR, ns1 gene [Vet World 2013; 6(8.000: 554-557

A Multiplex RT-PCR Assay for S. aureus, L. monocytogenes, and Salmonella spp. Detection in Raw Milk with Pre-enrichment

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Tian Ding

2017-05-01

Full Text Available This study firstly developed a multiplex real-time PCR (RT-PCR technique combined with a pre-enrichment step to simultaneously detect Staphylococcus aureus (S. aureus, Listeria monocytogenes (L. monocytogenes and Salmonella spp. in raw milk and the dairy farm environment (feces, soil, feed, water in one reaction. Brain heart infusion (BHI broth was selected for the enrichment step to increase the density of the target bacteria by using an incubation of 4 h before multiplex RT-PCR. The results showed that the detection limit of the multiplex real-time assay was approximately 102 CFU/mL for pure cultures and artificially contaminated milk without enrichment, while 12, 14, and 10 CFU/25 mL, respectively, for S. aureus, L. monocytogenes, and Salmonella spp. after pre-enrichment. The newly developed multiplex RT-PCR assay was applied to 46 dairy farm environmental samples and raw milk samples covering a wide variety of sample types. The results demonstrated that the multiplex RT-PCR assay coupled with the BHI enrichment broth was suitable for the simultaneous screening of S. aureus, L. monocytogenes, and Salmonella spp. in the pasture environment and in raw milk. The multiplex RT-PCR assay clearly and successfully shortened the total detection time and reduced labor compared to conventional culture-based methods for testing natural samples.

The Effect of Mutation on Explorative & Exploitative Behaviours with rt-NEAT

OpenAIRE

Pham, Khoa Dang Phu

2017-01-01

This thesis aims to explore how different factors can affect the search performance of evolutionary algorithms. Additionally how applying different mutation techniques changes the overall search performance of rtNEAT. This thesis demonstrates how mutation affects exploration and exploitation when optimizing for a 3-input XOR gate as well as optimizing agent movements in a real time environment. This thesis is also provided as a guideline in the development of an evolutionary algorithm, partic...

Real-time computing platform for spiking neurons (RT-spike).

Science.gov (United States)

Ros, Eduardo; Ortigosa, Eva M; Agís, Rodrigo; Carrillo, Richard; Arnold, Michael

2006-07-01

A computing platform is described for simulating arbitrary networks of spiking neurons in real time. A hybrid computing scheme is adopted that uses both software and hardware components to manage the tradeoff between flexibility and computational power; the neuron model is implemented in hardware and the network model and the learning are implemented in software. The incremental transition of the software components into hardware is supported. We focus on a spike response model (SRM) for a neuron where the synapses are modeled as input-driven conductances. The temporal dynamics of the synaptic integration process are modeled with a synaptic time constant that results in a gradual injection of charge. This type of model is computationally expensive and is not easily amenable to existing software-based event-driven approaches. As an alternative we have designed an efficient time-based computing architecture in hardware, where the different stages of the neuron model are processed in parallel. Further improvements occur by computing multiple neurons in parallel using multiple processing units. This design is tested using reconfigurable hardware and its scalability and performance evaluated. Our overall goal is to investigate biologically realistic models for the real-time control of robots operating within closed action-perception loops, and so we evaluate the performance of the system on simulating a model of the cerebellum where the emulation of the temporal dynamics of the synaptic integration process is important.

Estudio de distribución de tiempos de residencia en un reactor biológico de lecho empacado cerámico

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Tatiana Rodríguez Chaparro

2004-01-01

Full Text Available La distribución de tiempos de residencia de un reactor es una característica del mezclado que ocurre dentro de él [ ] 1 [ ] 2 ; su determinación es básica para el diseño de cualquier tipo de reactor en escala real. El objetivo de esta investigación consistió en determinar la distribución de tiempos de residencia en un reactor biológico de lecho empacado cerámico (anillos a partir de pruebas con trazadores. Los resultados obtenidos utilizando las técnicas de inyección por paso y pulso fueron 34.577 seg., y 17.745 seg., respectivamente, y la dispersión calculada infinita. Lo anterior permite concluir que en reactores de lecho empacado cerámico (anillos las moléculas del trazador se distribuyen uniformemente en todo el sistema. Los ensayos se realizaron en un modelo a escala laboratorio.

Experimentation of RT-LOTOS for a critical function of a power plant instrumentation and control system; Experimentation de RT-LOTOS pour une fonction critique d`un systeme de controle-commande en centrale

Energy Technology Data Exchange (ETDEWEB)

Andriantsiiferana, L.; Courtiat, J.P.; De Oliveira, R.C.

1996-01-01

This document is the final report of the contract between LAAS-CNRS and the EdF Direction of Researches and Studies about the experimentation of RT-LOTOS formal description technique on a critical function of a nuclear power plant instrumentation and control system. This report comprises 4 parts: part 1 describes the RT-LOTOS (Real Time-Language of Temporal Ordering Specifications) tutorial and its RTL tool environment, the different RT-LOTOS operators and semantics, and the RTL tool main functionalities; part 2 deals with the methodology and the global architecture for the specification and validation of the CCT (Central Calculator for Treatment); part 3 gives more details about the different processes identified in the specification architecture and presents the main results obtained for the validation of the nominal functioning; part 4 describes some exceptional situations and shows how some failures and their associated recovery mechanisms can be modelled. (J.S.). 6 refs., 53 figs., 5 tabs., 2 appends.

Recent Upgrades to NASA SPoRT Initialization Datasets for the Environmental Modeling System

Science.gov (United States)

Case, Jonathan L.; LaFontaine, Frank J.; Molthan, Andrew L.; Zavodsky, Bradley T.; Rozumalski, Robert A.

2012-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center has developed several products for its National Weather Service (NWS) partners that can initialize specific fields for local model runs within the NOAA/NWS Science and Training Resource Center (STRC) Environmental Modeling System (EMS). In last year's NWA abstract on this topic, the suite of SPoRT products supported in the STRC EMS was presented, which includes a Sea Surface Temperature (SST) composite, a Great Lakes sea-ice extent, a Green Vegetation Fraction (GVF) composite, and NASA Land Information System (LIS) gridded output. This abstract and companion presentation describes recent upgrades made to the SST and GVF composites, as well as the real-time LIS runs. The Great Lakes sea-ice product is unchanged from 2011. The SPoRT SST composite product has been expanded geographically and as a result, the resolution has been coarsened from 1 km to 2 km to accommodate the larger domain. The expanded domain covers much of the northern hemisphere from eastern Asia to western Europe (0 N to 80 N latitude and 150 E to 10 E longitude). In addition, the NESDIS POES-GOES product was added to fill in gaps caused by the Moderate Resolution Imaging Spectroradiometer (MODIS) being unable to sense in cloudy regions, replacing the recently-lost Advanced Microwave Scanning Radiometer for EOS with negligible change to product fidelity. The SST product now runs twice per day for Terra and Aqua combined data collections from 0000 to 1200 UTC and from 1200 to 0000 UTC, with valid analysis times at 0600 and 1800 UTC. The twice-daily compositing technique reduces the overall latency of the previous version while still representing the diurnal cycle characteristics. The SST composites are available at approximately four hours after the end of each collection period (i.e. 1600 UTC for the nighttime analysis and 0400 UTC for the daytime analysis). The real-time MODIS GVF composite has only received minor updates in the

Tiempo y espacio en la Duat: observaciones respecto de los Libros del Más Allá del Reino Nuevo

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Mariano Bonanno

2017-12-01

Full Text Available Se reflexiona sobre las categorías tiempo y espacio en un marco acotado: la Duat y la noche, donde Ra se sumerge a partir de las primeras horas de oscuridad y hasta los primeros signos del amanecer. El objeto de este estudio son los denominados Libros del Más Allá del Reino Nuevo (Libro del Amduat, Libro de las Puertas, Libro de las Cavernas y Libro de la Tierra, composiciones funerarias que decoran las tumbas reales del Valle de los Reyes, en Luxor, Egipto.

EL ESTUDIO DEL TIEMPO: EL USO DE LA INDUMENTARIA COMO CONCEPTO ORDENADOR DEL TIEMPO

OpenAIRE

Llonch Molina, Nayra

2015-01-01

El presente artículo es el resultado de diversas investigaciones basadas en el uso de la indumentaria como estructurante cronológico de la historia. La investigación aquí presentada plantea el problema de la conceptualización del tiempo y valora la aplicación de algunas propuestas metodológicas en este sentido.La investigación que aquí se presenta se planteó como una muestra criterial para detectar el potencial didáctico de un conjunto de unidades articuladas, con la finalidad de hilar una lí...

Location and Classification of Moving Fruits in Real Time with a Single Color Camera Localización y Clasificación de Frutas Móviles en Tiempo Real con una Cámara Individual a Color

Directory of Open Access Journals (Sweden)

José F Reyes

2009-06-01

Full Text Available Quality control of fruits to satisfy increasingly competitive food markets requires the implementation of automatic servovisual systems in fruit processing operations to cope with market challenges. A new and fast method for identifying and classifying moving fruits by processing single color images from a static camera in real time was developed and tested. Two algorithms were combined to classify and track moving fruits on image plane using representative color features. The method allows classifying the fruit by color segmentation and estimating its position on the image plane, which provides a reliable algorithm to be implemented in robotic manipulation of fruits. To evaluate the methodology an experimental real time system simulating a conveyor belt and real fruit was used. Testing of the system indicates that with natural lighting conditions and proper calibration of the system a minimum error of 2% in classification of fruits is feasible. The methodology allows for very simple implementation, and although operational results are promising, even higher accuracy may be possible if structured illumination is used.El control de calidad en frutas y hortalizas para satisfacer mercados cada vez mas exigentes, requiere la implementación de sistemas automáticos servo visuales en operaciones de de procesamiento de frutas para responder a estos desafíos de mercado. En está trabajo se desarrollo y evaluó un nuevo método para identificar y clasificar frutas en movimiento mediante el procesamiento en tiempo real imágenes a color capturadas por una cámara individual estática. Se combinaron dos algoritmos para clasificar y rastrear frutas en movimiento en el plano de imagen utilizando aspectos representativos de color. El método permite clasificar las frutas en base a segmentación de color y estimar su posición en el plano de imagen, lo cual proporciona un algoritmo confiable para ser implementado en un brazo robótico.de manipulación de

Real Time RT-PCR with a Newly Designed Set of Promers Confirmed the Presence of 2b and 2x/d Myosim Heavy Chain mRNAs in the Rat Slow Soleus Muscle

Czech Academy of Sciences Publication Activity Database

Žurmanová, Jitka; Půta, F.; Stopková, R.; Soukup, Tomáš

2008-01-01

Roč. 57, č. 6 (2008), s. 973-978 ISSN 0862-8408 R&D Projects: GA MŠk(CZ) LC554; GA ČR(CZ) GA305/06/1115; GA ČR(CZ) GA304/08/0256 Grant - others:EC(XE) LSH-CT-2004-511978 Institutional research plan: CEZ:AV0Z50110509 Keywords : rat slow soleus muscle * myosin heavy chain isoforms * real time RT-PCR Subject RIV: ED - Physiology Impact factor: 1.653, year: 2008

Applications of NASA and NOAA Satellite Observations by NASA's Short-term Prediction Research and Transition (SPoRT) Center in Response to Natural Disasters

Science.gov (United States)

Molthan, Andrew L.; Burks, Jason E.; McGrath, Kevin M.; Jedlovec, Gary J.

2012-01-01

NASA s Short-term Prediction Research and Transition (SPoRT) Center supports the transition of unique NASA and NOAA research activities to the operational weather forecasting community. SPoRT emphasizes real-time analysis and prediction out to 48 hours. SPoRT partners with NOAA s National Weather Service (NWS) Weather Forecast Offices (WFOs) and National Centers to improve current products, demonstrate future satellite capabilities and explore new data assimilation techniques. Recently, the SPoRT Center has been involved in several activities related to disaster response, in collaboration with NOAA s National Weather Service, NASA s Applied Sciences Disasters Program, and other partners.

The diagnostic utility of stabilized blood for detection of foot-and-mouth disease virus RNA by RT-qPCR

DEFF Research Database (Denmark)

S. Fontél, Kristina; Bøtner, Anette; Belsham, Graham

In Europe, clinical signs indicative of foot-and-mouth disease (FMD), would immediately lead to collection of blood and relevant organ material for further laboratory examination for this vesicular disease virus. Today, the first line system for detection of virus in the sample material is real t...... time RT-PCR (RT-qPCR). The aim of this study was to investigate the diagnostic utility of stabilized blood for detection of FMDV RNA in this system....

Tiempo máximo aceptable de trabajo para tareas ejecutadas con miembros superiores e inferiores

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Juan C. Velásquez V.

2015-12-01

Full Text Available Introducción: La carga física de trabajo es uno de los principales factores de riesgo a los que se enfrentan los trabajadores. En la actualidad los métodos propuestos para evaluar la carga física dinámica contemplan el trabajo con todo el cuerpo y no discriminan por segmentos corporales. Objetivo: Determinar el tiempo máximo aceptable de trabajo cuando el trabajo se ejecuta con todo el cuerpo, con los miembros superiores o los miembros inferiores. Métodos: Se realizó medición de consumo de oxígeno mediante ergoespirometria y monitorización de la frecuencia cardiaca en 30 trabajadores expuestos a diversas cargas ejecutadas con todo el cuerpo, miembros inferiores y miembros superiores. Se determinó el umbral anaeróbico por coeficiente respiratorio, el cual sirvió de base para de determinación del tiempo máximo aceptable de trabajo. Resultados: Los tiempos máximos aceptables de trabajo fueron similares para tareas con todo el cuerpo y con miembros inferiores, pero significativamente menores para tareas realizadas con miembros superiores. Se halló un modelo de correlación exponencial negativo entre en tiempo de trabajo, el consumo de oxígeno, y la frecuencia cardiaca, R > 0,9 en todos los casos. Se plantearon 9 ecuaciones de regresión para determinar el tiempo máximo aceptable de trabajo. Conclusiones: El tiempo máximo aceptable de trabajo para miembros inferiores y para todo el cuerpo se comportan de manera similar. El tiempo máximo aceptables de trabajo con miembros superiores es significativamente inferior a los anteriores. La frecuencia cardiaca relativa parece ser el mejor indicador para medir el tiempo máximo aceptables de trabajo en campo.

La constelación freudiana y el tiempo del consumo

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Marinas, José Miguel

2007-02-01

Full Text Available Psychoanalysis arises in the context of the crisis of the liberal subject: the transition from the culture of production to the culture of consumption. The time of progress (production comes hand in hand with a new model of time: the instant (repetition, and the time of the unconscious (desire. The biographical task is demanded as a moral duty. This paper examines the antecedents of this Freudian constellation: Nietzsche, for example, talks about fashion.El psicoanalisis surge en el contexto de la crisis del sujeto liberal, es decir en el paso de la cultura de la producción a la cultura del consumo. El tiempo del progreso (de la producción se ve acompañado de un nuevo modelo el tiempo del instante (de la repetición, y el tiempo de lo inconsciente (del deseo. La tarea biográfica se incrementa como tarea moral. Este artículo examina los antecedentes de esa constelación freudiana: Nietzsche, por ejemplo, habla de la moda.

Selection and Validation of Reference Genes for qRT-PCR Expression Analysis of Candidate Genes Involved in Olfactory Communication in the Butterfly Bicyclus anynana

OpenAIRE

Arun, Alok; Bauml?, V?ronique; Amelot, Ga?l; Nieberding, Caroline M.

2015-01-01

Real-time quantitative reverse transcription PCR (qRT-PCR) is a technique widely used to quantify the transcriptional expression level of candidate genes. qRT-PCR requires the selection of one or several suitable reference genes, whose expression profiles remain stable across conditions, to normalize the qRT-PCR expression profiles of candidate genes. Although several butterfly species (Lepidoptera) have become important models in molecular evolutionary ecology, so far no study aimed at ident...

Addressing BI Transactional Flows in the Real-Time Enterprise Using GoldenGate TDM

Science.gov (United States)

Pareek, Alok

It's time to visit low latency and reliable real-time (RT) infrastructures to support next generation BI applications instead of continually debating the need and notion of real-time. The last few years have illuminated some key paradigms affecting data management. The arguments put forth to move away from traditional DBMS architectures have proven persuasive - and specialized architectural data stores are being adopted in the industry [1]. The change from traditional database pull methods towards intelligent routing/push models is underway, causing applications to be redesigned, redeployed, and re-architected. One direct result of this is that despite original warnings about replication [2] - enterprises continue to deploy multiple replicas to support both performance, and high availability of RT applications, with an added complexity around manageability of heterogeneous computing systems. The enterprise is overflowing with data streams that require instantaneous processing and integration, to deliver faster visibility and invoke conjoined actions for RT decision making, resulting in deployment of advanced BI applications as can be seen by stream processing over RT feeds from operational systems for CEP [3]. Given these various paradigms, a multitude of new challenges and requirements have emerged, thereby necessitating different approaches to management of RT applications for BI. The purpose of this paper is to offer a viewpoint on how RT affects critical operational applications, evolves the weight of non-critical applications, and pressurizes availability/data-movement requirements in the underlying infrastructure. I will discuss how the GoldenGate TDM platform is being deployed within the RTE to manage some of these challenges particularly around RT dissemination of transactional data to reduce latency in data integration flows, to enable real-time reporting/DW, and to increase availability of underlying operational systems. Real world case studies will be

Node Ranking Tool - NoRT

Science.gov (United States)

2018-03-23

NoRT) that was developed as part of the Applied Network Science 6.2 base program work unit at NRL, Code 5580. We explain the theory of NoRT and how...to use it. 23-03-2018 Memorandum Report TOPSIS, Social Network, Sensor Network, Centrality, Diffusion, Disease, Virus, Expectation , Pandemic...base program work unit at NRL. We explain the theory of NoRT and how to use it. Index Terms TOPSIS, Social Network, Sensor Network, Centrality, Diffusion

Immunomagnetic separation combined with RT-qPCR for determining the efficacy of disinfectants against human noroviruses

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Pengbo Liu

2015-03-01

Full Text Available Summary: Little is known about the effectiveness of disinfectants against human noroviruses (NoV partially because human NoV cannot be routinely cultured in laboratory. The objective of this study was to develop a NoV monoclonal antibody-conjugated immunomagnetic separation (IMS procedure combined with real-time reverse transcription polymerase chain reaction (RT-qPCR assays to study the in vitro efficacy of disinfectants against human NoV. Monoclonal antibodies against Norwalk virus (NV, GI.1 and NoV GII.4 were produced using unique NoV capsid proteins, and the antibodies were conjugated to magnetic Dynalbeads. The immunomagnetic beads were used to simultaneously capture intact NoV in samples and effectively remove PCR inhibitors. We examined the efficacy of ethanol, sodium hypochlorite, nine commercially available disinfectants, and one prototype disinfectant using the IMS/RT-qPCR. The sensitivity of this procedure was approximately 100 virus particles for both the NV and GII.4 viruses. The average log reductions in in vitro activities varied between disinfectants. The prototype disinfectant produced an average 3.19-log reduction in NV and a 1.38-log reduction in GII.4. The prototype disinfectant is promising of inactivating NoV. This method can be used to evaluate in vitro activity of disinfectants against human NoV. The IMS/RT-qPCR method is promising as an effective method to remove PCR inhibitors in disinfectants and enable the evaluation of the efficacy of disinfectants. Keywords: Disinfectant, Norovirus, Immunomagnetic separation, Real-time RT-PCR, PCR inhibition

Selection of suitable reference genes for RT-qPCR analyses in cyanobacteria.

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Filipe Pinto

Full Text Available Cyanobacteria are a group of photosynthetic prokaryotes that have a diverse morphology, minimal nutritional requirements and metabolic plasticity that has made them attractive organisms to use in biotechnological applications. The use of these organisms as cell factories requires the knowledge of their physiology and metabolism at a systems level. For the quantification of gene transcripts real-time quantitative polymerase chain reaction (RT-qPCR is the standard technique. However, to obtain reliable RT-qPCR results the use and validation of reference genes is mandatory. Towards this goal we have selected and analyzed twelve candidate reference genes from three morphologically distinct cyanobacteria grown under routinely used laboratory conditions. The six genes exhibiting less variation in each organism were evaluated in terms of their expression stability using geNorm, NormFinder and BestKeeper. In addition, the minimum number of reference genes required for normalization was determined. Based on the three algorithms, we provide a list of genes for cyanobacterial RT-qPCR data normalization. To our knowledge, this is the first work on the validation of reference genes for cyanobacteria constituting a valuable starting point for future works.

17th IEEE NPSS Real Time Conference – RT-2010

CERN Multimedia

Carlos Varandas

2010-01-01

Congress Centre of “Instituto Superior Técnico”, Lisboa, Portugal, 24-28 May, 2010 ABSTRACT SUBMISSION OPEN Abstract Submission Deadline: March 1st, 2010 Dear Sir/Madam, We are pleased to announce that abstract submission for the 17th IEEE NPSS Real Time Conference is now open on our web site. The deadline for submitting an abstract is 1st March 2010. Full conference details General Chairman

En tiempos de miseria

Directory of Open Access Journals (Sweden)

Mario Valencia

2015-12-01

Full Text Available http://dx.doi.org/10.5007/1807-9288.2015v11n2p192 En Tiempos Miseria constituye una propuesta de visual-concreta contemporánea basada en la exploración de la frontera entre artes visuales, literatura y tecnología. En este hipertexto se da un rompimiento estructural del esquema lingüístico tradicional. Por la forma, por el contenido, y por la participación del espectador en la puesta en escena del acontecimiento poiético y por la morfología del texto. Recogiendo la pregunta de Hölderlin “Para qué poetas en tiempos de penuria”, la obra establece un dialogo intertextual y transemiótico con ese cuestionamiento a través de esferas rítmicas y de sentidos expresados en 42 textos diseminados a través de enlaces y vínculos que permiten la multidireccionalidad y la libertad de orden de lectura para el espectador. La propuesta brevemente sintetizada asume un propósito ineludible de abordar, eficazmente, los retos de la actual cibercultura, para mostrar, desde la poesía en una clara filiación con la poética mesoamericana (en términos de temporalidades, ritmos y tonos, dada la estructura de este aparato de poesía, los paisajes del desastre de la actual civilización occidental, hija de la razón instrumental que transformó todas las esferas de lo humano  y que, por lo tanto, obliga a tomar posiciones, en este caso, desde la creación estética critico, sin desechar ni olvidar la génesis originaria de todo quehacer poético.

MZC Gel Inhibits SHIV-RT and HSV-2 in Macaque Vaginal Mucosa and SHIV-RT in Rectal Mucosa.

Science.gov (United States)

Calenda, Giulia; Villegas, Guillermo; Barnable, Patrick; Litterst, Claudia; Levendosky, Keith; Gettie, Agegnehu; Cooney, Michael L; Blanchard, James; Fernández-Romero, José A; Zydowsky, Thomas M; Teleshova, Natalia

2017-03-01

The Population Council's microbicide gel MZC (also known as PC-1005) containing MIV-150 and zinc acetate dihydrate (ZA) in carrageenan (CG) has shown promise as a broad-spectrum microbicide against HIV, herpes simplex virus (HSV), and human papillomavirus. Previous data show antiviral activity against these viruses in cell-based assays, prevention of vaginal and rectal simian-human immunodeficiency virus reverse transcriptase (SHIV-RT) infection, and reduction of vaginal HSV shedding in rhesus macaques and also excellent antiviral activity against HSV and human papillomavirus in murine models. Recently, we demonstrated that MZC is safe and effective against SHIV-RT in macaque vaginal explants. Here we established models of ex vivo SHIV-RT/HSV-2 coinfection of vaginal mucosa and SHIV-RT infection of rectal mucosa in macaques (challenge of rectal mucosa with HSV-2 did not result in reproducible tissue infection), evaluated antiviral activity of MZC, and compared quantitative polymerase chain reaction (PCR) and enzyme-linked immunosorbent assay readouts for monitoring SHIV-RT infection. MZC (at nontoxic dilutions) significantly inhibited SHIV-RT in vaginal and rectal mucosas and HSV-2 in vaginal mucosa when present during viral challenge. Analysis of SHIV-RT infection and MZC activity by 1-step simian immunodeficiency virus gag quantitative RT-PCR and p27 enzyme-linked immunosorbent assay demonstrated similar virus growth dynamics and MZC activity by both methods and higher sensitivity of quantitative RT-PCR. Our data provide more evidence that MZC is a promising dual compartment multipurpose prevention technology candidate.

Una reflexión entorno al tiempo. Experiencias docentes en la India

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Julio Grijalba Bengoetxea

2014-10-01

Full Text Available Nuestra relación con la enseñanza de la Arquitectura en la India, entre 2009 y 2014, ha fructificado en varias ac­ciones: La participación en el III Euro/ Indian Summit, la elaboración de la exposición “Discovering Ahmedabad”. Annals of Reinvention, la intervención en la “Ahmedabad Heritage Week”, la propuesta de “Proyecto de residencia para profesores y alumnos de Máster en Ahmedabad” y, como conclusión, el Programa europeo EuropeAid: “Cultural Heritage and Management Venture Lab” in Ahmedabad, India. En todas ellas, tuvimos conciencia de que hablar de Patrimonio, Restauración y Preservación es reflexionar sobre el sentido y la representación del Tiempo. Mientras que en Occidente el tiempo está ligado al movimiento (sucesión de un antes y un después diferentes en Oriente, el tiempo se integra en el fluir de la naturaleza. Una reflexión sobre el tiempo como instrumento del proyecto desde dos puntos de vista que cree­mos complementarios o, en términos más ortodoxos, desde una lectura disciplinar, de conciliación de opuestos: Oriente versus Occidente.

Atucha II NPP full scope simulator modelling with the thermal hydraulic code TRAC{sub R}T

Energy Technology Data Exchange (ETDEWEB)

Alonso, Pablo Rey; Ruiz, Jose Antonio; Rivero, Norberto, E-mail: prey@tecnatom.e, E-mail: jaruiz@tecnatom.e, E-mail: nrivero@tecnatom.e [Tecnatom S.A., Madrid (Spain)

2011-07-01

In February 2010 NA-SA (Nucleoelectrica Argentina S.A.) awarded Tecnatom the Atucha II full scope simulator project. NA-SA is a public company owner of the Argentinean nuclear power plants. Atucha II is due to enter in operation shortly. Atucha II NPP is a PHWR type plant cooled by the water of the Parana River and has the same design as the Atucha I unit, doubling its power capacity. Atucha II will produce 745 MWe utilizing heavy water as coolant and moderator, and natural uranium as fuel. A plant singular feature is the permanent core refueling. TRAC{sub R}T is the first real time thermal hydraulic six-equations code used in the training simulation industry for NSSS modeling. It is the result from adapting to real time the best estimate code TRACG. TRAC{sub R}T is based on first principle conservation equations for mass, energy and momentum for liquid and steam phases, with two phase flows under non homogeneous and non equilibrium conditions. At present, it has been successfully implemented in twelve full scope replica simulators in different training centers throughout the world. To ease the modeling task, TRAC{sub R}T includes a graphical pre-processing tool designed to optimize this process and alleviate the burden of entering alpha numerical data in an input file. (author)

A graphics processing unit accelerated motion correction algorithm and modular system for real-time fMRI.

Science.gov (United States)

Scheinost, Dustin; Hampson, Michelle; Qiu, Maolin; Bhawnani, Jitendra; Constable, R Todd; Papademetris, Xenophon

2013-07-01

Real-time functional magnetic resonance imaging (rt-fMRI) has recently gained interest as a possible means to facilitate the learning of certain behaviors. However, rt-fMRI is limited by processing speed and available software, and continued development is needed for rt-fMRI to progress further and become feasible for clinical use. In this work, we present an open-source rt-fMRI system for biofeedback powered by a novel Graphics Processing Unit (GPU) accelerated motion correction strategy as part of the BioImage Suite project ( www.bioimagesuite.org ). Our system contributes to the development of rt-fMRI by presenting a motion correction algorithm that provides an estimate of motion with essentially no processing delay as well as a modular rt-fMRI system design. Using empirical data from rt-fMRI scans, we assessed the quality of motion correction in this new system. The present algorithm performed comparably to standard (non real-time) offline methods and outperformed other real-time methods based on zero order interpolation of motion parameters. The modular approach to the rt-fMRI system allows the system to be flexible to the experiment and feedback design, a valuable feature for many applications. We illustrate the flexibility of the system by describing several of our ongoing studies. Our hope is that continuing development of open-source rt-fMRI algorithms and software will make this new technology more accessible and adaptable, and will thereby accelerate its application in the clinical and cognitive neurosciences.

Ex vivo screening for immunodominant viral epitopes by quantitative real time polymerase chain reaction (qRT-PCR

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Nagorsen Dirk

2003-12-01

Full Text Available Abstract The identification and characterization of viral epitopes across the Human Leukocyte Antigen (HLA polymorphism is critical for the development of actives-specific or adoptive immunotherapy of virally-mediated diseases. This work investigates whether cytokine mRNA transcripts could be used to identify epitope-specific HLA-restricted memory T lymphocytes reactivity directly in fresh peripheral blood mononuclear cells (PBMCs from viral-seropositive individuals in response to ex vivo antigen recall. PBMCs from HLA-A*0201 healthy donors, seropositive for Cytomegalovirus (CMV and Influenza (Flu, were exposed for different periods and at different cell concentrations to the HLA-A*0201-restricted viral FluM158–66 and CMVpp65495–503 peptides. Quantitative real time PCR (qRT-PCR was employed to evaluate memory T lymphocyte immune reactivation by measuring the production of mRNA encoding four cytokines: Interferon-γ (IFN-γ, Interleukin-2 (IL-2, Interleukin-4 (IL-4, and Interleukin-10 (IL-10. We could characterize cytokine expression kinetics that illustrated how cytokine mRNA levels could be used as ex vivo indicators of T cell reactivity. Particularly, IFN-γ mRNA transcripts could be consistently detected within 3 to 12 hours of short-term stimulation in levels sufficient to screen for HLA-restricted viral immune responses in seropositive subjects. This strategy will enhance the efficiency of the identification of viral epitopes independently of the individual HLA phenotype and could be used to follow the intensity of immune responses during disease progression or in response to in vivo antigen-specific immunization.

Ex vivo screening for immunodominant viral epitopes by quantitative real time polymerase chain reaction (qRT-PCR)

Science.gov (United States)

Provenzano, Maurizio; Mocellin, Simone; Bonginelli, Paola; Nagorsen, Dirk; Kwon, Seog-Woon; Stroncek, David

2003-01-01

The identification and characterization of viral epitopes across the Human Leukocyte Antigen (HLA) polymorphism is critical for the development of actives-specific or adoptive immunotherapy of virally-mediated diseases. This work investigates whether cytokine mRNA transcripts could be used to identify epitope-specific HLA-restricted memory T lymphocytes reactivity directly in fresh peripheral blood mononuclear cells (PBMCs) from viral-seropositive individuals in response to ex vivo antigen recall. PBMCs from HLA-A*0201 healthy donors, seropositive for Cytomegalovirus (CMV) and Influenza (Flu), were exposed for different periods and at different cell concentrations to the HLA-A*0201-restricted viral FluM158–66 and CMVpp65495–503 peptides. Quantitative real time PCR (qRT-PCR) was employed to evaluate memory T lymphocyte immune reactivation by measuring the production of mRNA encoding four cytokines: Interferon-γ (IFN-γ), Interleukin-2 (IL-2), Interleukin-4 (IL-4), and Interleukin-10 (IL-10). We could characterize cytokine expression kinetics that illustrated how cytokine mRNA levels could be used as ex vivo indicators of T cell reactivity. Particularly, IFN-γ mRNA transcripts could be consistently detected within 3 to 12 hours of short-term stimulation in levels sufficient to screen for HLA-restricted viral immune responses in seropositive subjects. This strategy will enhance the efficiency of the identification of viral epitopes independently of the individual HLA phenotype and could be used to follow the intensity of immune responses during disease progression or in response to in vivo antigen-specific immunization. PMID:14675481

On the design of a real-time volume rendering engine

NARCIS (Netherlands)

Smit, Jaap; Wessels, H.L.F.; van der Horst, A.; Bentum, Marinus Jan

1992-01-01

An architecture for a Real-Time Volume Rendering Engine (RT-VRE) is given, capable of computing 750 × 750 × 512 samples from a 3D dataset at a rate of 25 images per second. The RT-VRE uses for this purpose 64 dedicated rendering chips, cooperating with 16 RISC-processors. A plane interpolator

On the design of a real-time volume rendering engine

NARCIS (Netherlands)

Smit, Jaap; Wessels, H.J.; van der Horst, A.; Bentum, Marinus Jan

1995-01-01

An architecture for a Real-Time Volume Rendering Engine (RT-VRE) is given, capable of computing 750 × 750 × 512 samples from a 3D dataset at a rate of 25 images per second. The RT-VRE uses for this purpose 64 dedicated rendering chips, cooperating with 16 RISC-processors. A plane interpolator

Quantitation of O6-methylguanine-DNA methyltransferase gene messenger RNA in gliomas by means of real-time RT-PCR and clinical response to nitrosoureas.

Science.gov (United States)

Tanaka, Satoshi; Oka, Hidehiro; Fujii, Kiyotaka; Watanabe, Kaoru; Nagao, Kumi; Kakimoto, Atsushi

2005-09-01

1. O6-methylguanine-DNA methyltransferase (MGMT) mRNA was measured in 50 malignant gliomas that had received 1-(4-amino-2-methyl-5-pyrimidynyl) methyl-3-(2-chloroethyl)-3-nitrosourea hydrochloride (ACNU) after the resection of the tumor by real-time reverse transcription-polymerase chain reaction (RT-PCR) using TaqMan probe. 2. The mean absolute value of MGMTmRNA normalized to the level of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) for 50 tumors was 1.29 x 10(4)+/- 1.28 x 10(4) copy/microg RNA (mean +/- SD). The amount of MGMTmRNA less than 6 x 10(3) copy/microg RNA was the most significant factor in predicting the initial effect of treatment with ACNU by multi-variant regression analysis (p = 0.0157). 3. These results suggest that quantitation of MGMTmRNA is the excellent method for predicting for the effect of ACNU in glioma therapy.

The use of best estimate codes to improve the simulation in real time; El uso de codigos best estimate y de entornos disenados para mejorar su productividad en simulacion en tiempo real

Energy Technology Data Exchange (ETDEWEB)

Rivero, N.; Esteban, J. A.; Lenhardt, G.

2007-07-01

Best estimate codes are assumed to be the technology solution providing the most realistic and accurate response. Best estimate technology provides a complementary solution to the conservative simulation technology usually applied to determine plant safety margins and perform security related studies. Tecnatom in the early 90's, within the MAS project, pioneered the initiative to implement best estimate code in its training simulators. Result of this project was the implementation of the first six-equations thermal hydraulic code worldwide (TRAC{sub R}T), running in a training environment. To meet real time and other specific training requirements, it was necessary to overcome important difficulties. Tecnatom has just adapted the Global Nuclear Fuel core Design code: PANAC 11, and is about to complete the General Electric TRACG04 thermal hydraulic code adaptation. This technology features a unique solution for nuclear plants aiming at providing the highest fidelity in simulation, enabling to consider the simulator as a multipurpose: engineering and training, simulation platform. Besides, a visual environment designed to optimize the models life cycle, covering both pre and post-processing activities, is in its late development phase. (Author)

Detection and differentiation of field and vaccine strains of canine distemper virus using reverse transcription followed by nested real time PCR (RT-nqPCR) and RFLP analysis.

Science.gov (United States)

Fischer, Cristine Dossin Bastos; Ikuta, Nilo; Canal, Cláudio Wageck; Makiejczuk, Aline; Allgayer, Mariangela da Costa; Cardoso, Cristine Hoffmeister; Lehmann, Fernanda Kieling; Fonseca, André Salvador Kazantzi; Lunge, Vagner Ricardo

2013-12-01

Canine distemper virus (CDV) is the cause of a severe and highly contagious disease in dogs. Practical diagnosis of canine distemper based on clinical signs and laboratory tests are required to confirm CDV infection. The present study aimed to develop a molecular assay to detect and differentiate field and vaccine CDV strains. Reverse transcription followed by nested real time polymerase chain reaction (RT-nqPCR) was developed, which exhibited analytical specificity (all the samples from healthy dogs and other canine infectious agents were not incorrectly detected) and sensitivity (all replicates of a vaccine strain were positive up to the 3125-fold dilution - 10(0.7) TCID50). RT-nqPCR was validated for CDV detection on different clinical samples (blood, urine, rectal and conjunctival swabs) of 103 animals suspected to have distemper. A total of 53 animals were found to be positive based on RT-nqPCR in at least one clinical sample. Blood resulted in more positive samples (50 out of 53, 94.3%), followed by urine (44/53, 83.0%), rectal (38/53, 71%) and conjunctival (27/53, 50.9%) swabs. A commercial immunochromatography (IC) assay had detected CDV in only 30 conjunctival samples of these positive dogs. Nucleoprotein (NC) gene sequencing of 25 samples demonstrated that 23 of them were closer to other Brazilian field strains and the remaining two to vaccine strains. A single nucleotide sequences difference, which creates an Msp I restriction enzyme digestion, was used to differentiate between field and vaccine CDV strains by restriction fragment length polymorphism (RFLP) analysis. The complete assay was more sensitive than was IC for the detection of CDV. Blood was the more frequently positive specimen and the addition of a restriction enzyme step allowed the differentiation of vaccine and Brazilian field strains. Copyright © 2013 Elsevier B.V. All rights reserved.

Validation of putative reference genes for gene expression studies in human hepatocellular carcinoma using real-time quantitative RT-PCR

International Nuclear Information System (INIS)

Cicinnati, Vito R; Shen, Qingli; Sotiropoulos, Georgios C; Radtke, Arnold; Gerken, Guido; Beckebaum, Susanne

2008-01-01

Reference genes, which are often referred to as housekeeping genes are frequently used to normalize mRNA levels between different samples in quantitative reverse transcription polymerase chain reaction (qRT-PCR). The selection of reference genes is critical for gene expression studies because the expression of these genes may vary among tissues or cells and may change under certain circumstances. Here, a systematic evaluation of six putative reference genes for gene expression studies in human hepatocellular carcinoma (HCC) is presented. Six genes, beta-2-microglobulin (B2M), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), hydroxymethyl-bilane synthase (HMBS), hypoxanthine phosphoribosyl-transferase 1 (HPRT1), succinate dehydrogenase complex, subunit A (SDHA) and ubiquitin C (UBC), with distinct functional characteristics and expression patterns were evaluated by qRT-PCR. Inhibitory substances in RNA samples were quantitatively assessed and controlled using an external RNA control. The stability of selected reference genes was analyzed using both geNorm and NormFinder software. HMBS and GAPDH were identified as the optimal reference genes for normalizing gene expression data between paired tumoral and adjacent non-tumoral tissues derived from patients with HCC. HMBS, GAPDH and UBC were identified to be suitable for the normalization of gene expression data among tumor tissues; whereas the combination of HMBS, B2M, SDHA and GAPDH was suitable for normalizing gene expression data among five liver cancer cell lines, namely Hep3B, HepG2, HuH7, SK-HEP-1 and SNU-182. The determined gene stability was increased after exclusion of RNA samples containing relatively higher inhibitory substances. Of six genes studied, HMBS was found to be the single best reference gene for gene expression studies in HCC. The appropriate choice of combination of more than one reference gene to improve qRT-PCR accuracy depends on the kind of liver tissues or cells under investigation

Validation of putative reference genes for gene expression studies in human hepatocellular carcinoma using real-time quantitative RT-PCR

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Radtke Arnold

2008-11-01

Full Text Available Abstract Background Reference genes, which are often referred to as housekeeping genes are frequently used to normalize mRNA levels between different samples in quantitative reverse transcription polymerase chain reaction (qRT-PCR. The selection of reference genes is critical for gene expression studies because the expression of these genes may vary among tissues or cells and may change under certain circumstances. Here, a systematic evaluation of six putative reference genes for gene expression studies in human hepatocellular carcinoma (HCC is presented. Methods Six genes, beta-2-microglobulin (B2M, glyceraldehyde-3-phosphate dehydrogenase (GAPDH, hydroxymethyl-bilane synthase (HMBS, hypoxanthine phosphoribosyl-transferase 1 (HPRT1, succinate dehydrogenase complex, subunit A (SDHA and ubiquitin C (UBC, with distinct functional characteristics and expression patterns were evaluated by qRT-PCR. Inhibitory substances in RNA samples were quantitatively assessed and controlled using an external RNA control. The stability of selected reference genes was analyzed using both geNorm and NormFinder software. Results HMBS and GAPDH were identified as the optimal reference genes for normalizing gene expression data between paired tumoral and adjacent non-tumoral tissues derived from patients with HCC. HMBS, GAPDH and UBC were identified to be suitable for the normalization of gene expression data among tumor tissues; whereas the combination of HMBS, B2M, SDHA and GAPDH was suitable for normalizing gene expression data among five liver cancer cell lines, namely Hep3B, HepG2, HuH7, SK-HEP-1 and SNU-182. The determined gene stability was increased after exclusion of RNA samples containing relatively higher inhibitory substances. Conclusion Of six genes studied, HMBS was found to be the single best reference gene for gene expression studies in HCC. The appropriate choice of combination of more than one reference gene to improve qRT-PCR accuracy depends on the

Validation of putative reference genes for gene expression studies in human hepatocellular carcinoma using real-time quantitative RT-PCR

Science.gov (United States)

Cicinnati, Vito R; Shen, Qingli; Sotiropoulos, Georgios C; Radtke, Arnold; Gerken, Guido; Beckebaum, Susanne

2008-01-01

Background Reference genes, which are often referred to as housekeeping genes are frequently used to normalize mRNA levels between different samples in quantitative reverse transcription polymerase chain reaction (qRT-PCR). The selection of reference genes is critical for gene expression studies because the expression of these genes may vary among tissues or cells and may change under certain circumstances. Here, a systematic evaluation of six putative reference genes for gene expression studies in human hepatocellular carcinoma (HCC) is presented. Methods Six genes, beta-2-microglobulin (B2M), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), hydroxymethyl-bilane synthase (HMBS), hypoxanthine phosphoribosyl-transferase 1 (HPRT1), succinate dehydrogenase complex, subunit A (SDHA) and ubiquitin C (UBC), with distinct functional characteristics and expression patterns were evaluated by qRT-PCR. Inhibitory substances in RNA samples were quantitatively assessed and controlled using an external RNA control. The stability of selected reference genes was analyzed using both geNorm and NormFinder software. Results HMBS and GAPDH were identified as the optimal reference genes for normalizing gene expression data between paired tumoral and adjacent non-tumoral tissues derived from patients with HCC. HMBS, GAPDH and UBC were identified to be suitable for the normalization of gene expression data among tumor tissues; whereas the combination of HMBS, B2M, SDHA and GAPDH was suitable for normalizing gene expression data among five liver cancer cell lines, namely Hep3B, HepG2, HuH7, SK-HEP-1 and SNU-182. The determined gene stability was increased after exclusion of RNA samples containing relatively higher inhibitory substances. Conclusion Of six genes studied, HMBS was found to be the single best reference gene for gene expression studies in HCC. The appropriate choice of combination of more than one reference gene to improve qRT-PCR accuracy depends on the kind of liver tissues

Real-Time Polymerase Chain Reaction: Applications in Diagnostic Microbiology

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Kordo B. A. Saeed

2013-11-01

Full Text Available The polymerase chain reaction (PCR has revolutionized the detection of DNA and RNA. Real-Time PCR (RT-PCR is becoming the gold standard test for accurate, sensitive and fast diagnosis for a large range of infectious agents. Benefits of this procedure over conventional methods for measuring RNA include its sensitivity, high throughout and quantification. RT-PCR assays have advanced the diagnostic abilities of clinical laboratories particularly microbiology and infectious diseases. In this review we would like to briefly discuss RT-PCR in diagnostic microbiology laboratory, beginning with a general introduction to RT-PCR and its principles, setting up an RT PCR, including multiplex systems and the avoidance and remediation of contamination issues. A segment of the review would be devoted to the application of RT-PCR in clinical practice concentrating on its role in the diagnosis and treatment of infectious diseases.

High-level expression of podoplanin in benign and malignant soft tissue tumors: immunohistochemical and quantitative real-time RT-PCR analysis.

Science.gov (United States)

Xu, Yongjun; Ogose, Akira; Kawashima, Hiroyuki; Hotta, Tetsuo; Ariizumi, Takashi; Li, Guidong; Umezu, Hajime; Endo, Naoto

2011-03-01

Podoplanin is a 38 kDa mucin-type transmembrane glycoprotein that was first identified in rat glomerular epithelial cells (podocytes). It is expressed in normal lymphatic endothelium, but is absent from vascular endothelial cells. D2-40 is a commercially available mouse monoclonal antibody which binds to an epitope on human podoplanin. D2-40 immunoreactivity is therefore highly sensitive and specific for lymphatic endothelium. Recent investigations have shown widespread applications of immunohistochemical staining with D2-40 in evaluating podoplanin expression as an immunohistochemical marker for diagnosis and prognosis in various tumors. To determine whether the podoplanin (D2-40) antibody may be useful for the diagnosis of soft tissue tumors, 125 cases, including 4 kinds of benign tumors, 15 kinds of malignant tumors and 3 kinds of tumor-like lesions were immunostained using the D2-40 antibody. Total RNA was extracted from frozen tumor tissue obtained from 41 corresponding soft tissue tumor patients and 12 kinds of soft tissue tumor cell lines. Quantitative real-time PCR reactions were performed. Immunohistochemical and quantitative real-time RT-PCR analyses demonstrated the expression of the podoplanin protein and mRNA in the majority of benign and malignant soft tissue tumors and tumor-like lesions examined, with the exception of alveolar soft part sarcoma, embryonal and alveolar rhabdomyosarcoma, extraskeletal Ewing's sarcoma/peripheral primitive neuro-ectodermal tumor and lipoma, which were completely negative for podoplanin. Since it is widely and highly expressed in nearly all kinds of soft tissue tumors, especially in spindle cell sarcoma, myxoid type soft tissue tumors and soft tissue tumors of the nervous system, podoplanin is considered to have little value in the differential diagnosis of soft tissue tumors.

Development of tailored real-time RT-PCR assays for the detection and differentiation of serotype O, A and Asia-1 foot-and-mouth disease virus lineages circulating in the Middle East.

Science.gov (United States)

Reid, Scott M; Mioulet, Valerie; Knowles, Nick J; Shirazi, Nazeem; Belsham, Graham J; King, Donald P

2014-10-01

Rapid and accurate diagnosis is essential for effective control of foot-and-mouth disease (FMD). In countries where FMD is endemic, identification of the serotypes of the causative virus strains is important for vaccine selection and tracing the source of outbreaks. In this study, real-time reverse transcription polymerase chain reaction (rRT-PCR) assays using primer/probe sets designed from the VP1 coding region of the virus genomes were developed for the specific detection of serotype O, A and Asia-1 FMD viruses (FMDVs) circulating in the Middle East. These assays were evaluated using representative field samples of serotype O strains belonging exclusively to the PanAsia-2 lineage, serotype A strains of the Iran-05 lineage and serotype Asia-1 viruses from three relevant sub-groups. When RNA extracted from archival and contemporary field strains was tested using one- or two-step rRT-PCR assays, all three primer/probe sets detected the RNA from homotypic viruses and no cross-reactivity was observed with heterotypic viruses. Similar results were obtained using both single- and multiplex assay formats. Using plasmid standards, the minimum detection level of these tests was found to be lower than two copies. The results illustrate the potential of tailored rRT-PCR tools for the detection and categorization of viruses circulating in the Middle East belonging to distinct subgroups of serotypes O, A and Asia-1. These assays can also overcome the problem of serotyping samples which are found positive by the generic rRT-PCR diagnostic assays but negative by virus isolation and antigen-detection ELISA which would otherwise have to be serotyped by nucleotide sequencing. A similar approach could be used to develop serotyping assays for FMDV strains circulating in other regions of the world. Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

Monitoring external beam radiotherapy using real-time beam visualization

Energy Technology Data Exchange (ETDEWEB)

Jenkins, Cesare H. [Department of Mechanical Engineering and Department of Radiation Oncology, Stanford University, Stanford, California 94305 (United States); Naczynski, Dominik J.; Yu, Shu-Jung S.; Xing, Lei, E-mail: lei@stanford.edu [Department of Radiation Oncology, Stanford University School of Medicine, Stanford, California 94305 (United States)

2015-01-15

Purpose: To characterize the performance of a novel radiation therapy monitoring technique that utilizes a flexible scintillating film, common optical detectors, and image processing algorithms for real-time beam visualization (RT-BV). Methods: Scintillating films were formed by mixing Gd{sub 2}O{sub 2}S:Tb (GOS) with silicone and casting the mixture at room temperature. The films were placed in the path of therapeutic beams generated by medical linear accelerators (LINAC). The emitted light was subsequently captured using a CMOS digital camera. Image processing algorithms were used to extract the intensity, shape, and location of the radiation field at various beam energies, dose rates, and collimator locations. The measurement results were compared with known collimator settings to validate the performance of the imaging system. Results: The RT-BV system achieved a sufficient contrast-to-noise ratio to enable real-time monitoring of the LINAC beam at 20 fps with normal ambient lighting in the LINAC room. The RT-BV system successfully identified collimator movements with sub-millimeter resolution. Conclusions: The RT-BV system is capable of localizing radiation therapy beams with sub-millimeter precision and tracking beam movement at video-rate exposure.

La administración del tiempo : una prioridad en la vida

OpenAIRE

Pérez Ibarra, Alba de Jesús

2016-01-01

El presente artículo plantea una reflexión en torno al impacto del tiempo como elemento vital, ya que su uso y optimización lo convierten en nuestro aliado, a sabiendas de que este es un componente que pertenece al pasado, implica el presente y también se relaciona con lo que vendrá. Se expone el valor del tiempo como el capital que hemos de aprender a gerenciar, por ser preciado para alcanzar propósitos, no solo de carácter personal, sino además aquellos objetivos altruistas que involucran a...

SUBDIVISIÓN DEL TIEMPO GEOLÓGICO EN LA AMAZONÍA PERUANA

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Fredy Hugo Guerra-Turín

2011-07-01

Full Text Available Mucho antes que el ser humano recorriera las tierras de nuestra cuenca,  sabana de la selva amazónica, existieron mares, grandes ríos, montañas y llanuras en lo que ahora es nuestro hábitat. En este breve texto se plantea un viaje por los paisajes creados que debieron existir a lo largo de los diferentes tiempos geológicos y lograr proponer la subdivisión del tiempo geológico en la Amazonía peruana, base para determinar la herencia de una gran biodiversidad; más grande en el mundo.

Una propuesta para el aprendizaje de ELE: tiempo libre e interculturalidad

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Concepción Francos Maldonado

2012-08-01

Full Text Available En la propuesta que aquí describimos nos centramos en el tiempo de ocio comoelemento esencial de socialización y desarrollo personal, y pretendemos que elalumnado participe en las actividades de ocio de la ciudad, a través de las que, ademásde favorecer la igualdad de oportunidades, la autonomía y las potencialidadesindividuales, se aprende la lengua y se trabaja la interculturalidad conociendo formas deuso del tiempo libre en la sociedad en la que estamos, informándonos de aspectoslúdicos de diferentes culturas, y también de algunos aspectos curriculares.

TIEMPO RECOMENDADO PARA UNA NUEVA CONCEPCIÓN POST ABORTO ESPONTÁNEO

OpenAIRE

Baltra E,Estebeni; de Mayo G,Tomás; Rojas G,María de los Ángeles; Arraztoa V,José Antonio

2008-01-01

Antecedentes: La recomendación del clínico acerca del tiempo a esperar para una nueva concepción post aborto espontáneo correspondería a una práctica basada en la experiencia y no en la evidencia. Objetivo: Análisis crítico de la literatura científica, en relación al tiempo de espera para intentar un nuevo embarazo en pacientes con aborto espontáneo, y los resultados materno-perinatales asociados a las diferentes conductas. Búsqueda sistemática en múltiples bases de datos. Resultados: Se enco...

NASA SPoRT Modeling and Data Assimilation Research and Transition Activities Using WRF, LIS and GSI

Science.gov (United States)

Case, Jonathan L.; Blankenship, Clay B.; Zavodsky, Bradley T.; Srikishen, Jayanthi; Berndt, Emily B.

2014-01-01

weather research and forecasting ===== The NASA Short-term Prediction Research and Transition (SPoRT) program has numerous modeling and data assimilation (DA) activities in which the WRF model is a key component. SPoRT generates realtime, research satellite products from the MODIS and VIIRS instruments, making the data available to NOAA/NWS partners running the WRF/EMS, including: (1) 2-km northwestern-hemispheric SST composite, (2) daily, MODIS green vegetation fraction (GVF) over CONUS, and (3) NASA Land Information System (LIS) runs of the Noah LSM over the southeastern CONUS. Each of these datasets have been utilized by specific SPoRT partners in local EMS model runs, with select offices evaluating the impacts using a set of automated scripts developed by SPoRT that manage data acquisition and run the NCAR Model Evaluation Tools verification package. SPoRT is engaged in DA research with the Gridpoint Statistical Interpolation (GSI) and Ensemble Kalman Filter in LIS for soil moisture DA. Ongoing DA projects using GSI include comparing the impacts of assimilating Atmospheric Infrared Sounder (AIRS) radiances versus retrieved profiles, and an analysis of extra-tropical cyclones with intense non-convective winds. As part of its Early Adopter activities for the NASA Soil Moisture Active Passive (SMAP) mission, SPoRT is conducting bias correction and soil moisture DA within LIS to improve simulations using the NASA Unified-WRF (NU-WRF) for both the European Space Agency's Soil Moisture Ocean Salinity and upcoming SMAP mission data. SPoRT has also incorporated real-time global GVF data into LIS and WRF from the VIIRS product being developed by NOAA/NESDIS. This poster will highlight the research and transition activities SPoRT conducts using WRF, NU-WRF, EMS, LIS, and GSI.

Real-world comparison of two molecular methods for detection of respiratory viruses

Directory of Open Access Journals (Sweden)

Miller E Kathryn

2011-06-01

Full Text Available Abstract Background Molecular polymerase chain reaction (PCR based assays are increasingly used to diagnose viral respiratory infections and conduct epidemiology studies. Molecular assays have generally been evaluated by comparing them to conventional direct fluorescent antibody (DFA or viral culture techniques, with few published direct comparisons between molecular methods or between institutions. We sought to perform a real-world comparison of two molecular respiratory viral diagnostic methods between two experienced respiratory virus research laboratories. Methods We tested nasal and throat swab specimens obtained from 225 infants with respiratory illness for 11 common respiratory viruses using both a multiplex assay (Respiratory MultiCode-PLx Assay [RMA] and individual real-time RT-PCR (RT-rtPCR. Results Both assays detected viruses in more than 70% of specimens, but there was discordance. The RMA assay detected significantly more human metapneumovirus (HMPV and respiratory syncytial virus (RSV, while RT-rtPCR detected significantly more influenza A. We speculated that primer differences accounted for these discrepancies and redesigned the primers and probes for influenza A in the RMA assay, and for HMPV and RSV in the RT-rtPCR assay. The tests were then repeated and again compared. The new primers led to improved detection of HMPV and RSV by RT-rtPCR assay, but the RMA assay remained similar in terms of influenza detection. Conclusions Given the absence of a gold standard, clinical and research laboratories should regularly correlate the results of molecular assays with other PCR based assays, other laboratories, and with standard virologic methods to ensure consistency and accuracy.

Absolute estimation of initial concentrations of amplicon in a real-time RT-PCR process

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Kohn Michael

2007-10-01

Full Text Available Abstract Background Since real time PCR was first developed, several approaches to estimating the initial quantity of template in an RT-PCR reaction have been tried. While initially only the early thermal cycles corresponding to exponential duplication were used, lately there has been an effort to use all of the cycles in a PCR. The efforts have included both fitting empirical sigmoid curves and more elaborate mechanistic models that explore the chemical reactions taking place during each cycle. The more elaborate mechanistic models require many more parameters than can be fit from a single amplification, while the empirical models provide little insight and are difficult to tailor to specific reactants. Results We directly estimate the initial amount of amplicon using a simplified mechanistic model based on chemical reactions in the annealing step of the PCR. The basic model includes the duplication of DNA with the digestion of Taqman probe and the re-annealing between previously synthesized DNA strands of opposite orientation. By modelling the amount of Taqman probe digested and matching that with the observed fluorescence, the conversion factor between the number of fluorescing dye molecules and observed fluorescent emission can be estimated, along with the absolute initial amount of amplicon and the rate parameter for re-annealing. The model is applied to several PCR reactions with known amounts of amplicon and is shown to work reasonably well. An expanded version of the model allows duplication of amplicon without release of fluorescent dye, by adding 1 more parameter to the model. The additional process is helpful in most cases where the initial primer concentration exceeds the initial probe concentration. Software for applying the algorithm to data may be downloaded at http://www.niehs.nih.gov/research/resources/software/pcranalyzer/ Conclusion We present proof of the principle that a mechanistically based model can be fit to observations

Real-time classification of auditory sentences using evoked cortical activity in humans

Science.gov (United States)

Moses, David A.; Leonard, Matthew K.; Chang, Edward F.

2018-06-01

Objective. Recent research has characterized the anatomical and functional basis of speech perception in the human auditory cortex. These advances have made it possible to decode speech information from activity in brain regions like the superior temporal gyrus, but no published work has demonstrated this ability in real-time, which is necessary for neuroprosthetic brain-computer interfaces. Approach. Here, we introduce a real-time neural speech recognition (rtNSR) software package, which was used to classify spoken input from high-resolution electrocorticography signals in real-time. We tested the system with two human subjects implanted with electrode arrays over the lateral brain surface. Subjects listened to multiple repetitions of ten sentences, and rtNSR classified what was heard in real-time from neural activity patterns using direct sentence-level and HMM-based phoneme-level classification schemes. Main results. We observed single-trial sentence classification accuracies of 90% or higher for each subject with less than 7 minutes of training data, demonstrating the ability of rtNSR to use cortical recordings to perform accurate real-time speech decoding in a limited vocabulary setting. Significance. Further development and testing of the package with different speech paradigms could influence the design of future speech neuroprosthetic applications.

Gestión del tiempo en alumnado universitario con diferentes niveles de rendimiento académico

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Angélica Garzón Umerenkova

2017-09-01

Full Text Available Resumen En este trabajo se estudia la relación entre gestión del tiempo y rendimiento académico en el alumnado universitario. La hipótesis de partida es que los estudiantes con alto nivel de habilidades en gestión del tiempo obtienen mejores resultados de aprendizaje. Se ha utilizado una muestra de 494 estudiantes universitarios de primer año, en dos universidades colombianas. A esta muestra se administró una adaptación al español del Time Management Behavior Questionnaire (TMBQ, y se recogieron datos sobre las calificaciones académicas en su primer año en la universidad. De manera complementaria, se han celebrado cuatro grupos focales con alumnado de bajo y alto nivel de rendimiento, accediendo a sus experiencias, opiniones y valoraciones en relación con la gestión del tiempo. Los resultados obtenidos indican la existencia de una cierta relación positiva entre las dos variables analizadas, en línea con los hallazgos de estudios previos. Al comparar la gestión del tiempo entre subgrupos de estudiantes que alcanzan las mejores y peores calificaciones, se observan diferencias a favor de los primeros, particularmente en la sub-escala relativa a sus percepciones sobre el control del tiempo. Los discursos de grupo reflejan también mejores conductas autorregulatorias en el manejo del tiempo por parte del alumnado de alto nivel de rendimiento. De acuerdo con estos resultados, se hacen recomendaciones sobre el entrenamiento del alumnado universitario de primer año en estrategias para la gestión del tiempo.

Assessment of brain reference genes for RT-qPCR studies in neurodegenerative diseases

OpenAIRE

Rydbirk, Rasmus; Folke, Jonas; Winge, Kristian; Aznar, Susana; Pakkenberg, Bente; Brudek, Tomasz

2016-01-01

Evaluation of gene expression levels by reverse transcription quantitative real-time PCR (RT-qPCR) has for many years been the favourite approach for discovering disease-associated alterations. Normalization of results to stably expressed reference genes (RGs) is pivotal to obtain reliable results. This is especially important in relation to neurodegenerative diseases where disease-related structural changes may affect the most commonly used RGs. We analysed 15 candidate RGs in 98 brain sampl...

Tiempo escolar y subjetividad: significaciones sobre la práctica docente en escuelas de tiempo completo

OpenAIRE

Pérez Ruiz, Abel; Ferrer Meza, Rosalba; García Díaz, Enrique

2015-01-01

El presente artículo aborda la forma en que docentes de educación básica, adscritos a escuelas de tiempo completo, interpretan y le dan sentido a su actividad profesional a partir de la articulación entre las condiciones institucionales del centro escolar, particularmente en relación con la organización de la jornada, y la práctica pedagógica ejercida cotidianamente. A partir de un estudio de caso en dos escuelas ubicadas en la zona oriente del Distrito Federal, se desprenden singulares aprec...

Establishment of realtime RT-PCR assay to detect polio virus in the Acute Flaccid Paralysis laboratory surveillance

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Nike Susanti

2016-07-01

Full Text Available AbstrakLatar belakang: Virus polio indigenous terakhir ditemukan di Indonesia tahun 1995 tetapi ancaman viruspolio impor dan mutasi virus dari Oral Polio Vaccine (OPV menjadi Vaccine Derived Poliovirus (VDPVmasih berlanjut. Tahun 1991 WHO mengembangkan Surveilans Acute Flaccid Paralysis (AFP dan tahun2014, identifikasi virus polio dengan real-time reverse transcriptase Polymerase Chain Reaction (rRTPCRmulai digunakan di Laboratorium Nasional Polio Pusat Biomedis dan Teknologi Dasar Kesehatan.Tujuan dari penggunaan rRT-PCR untuk mendapatkan metode yang cepat dan lebih baik dalam memantausirkulasi dan mutasi virus polio.Metode: Isolat polio positif diidentifikasi menggunakanan rRT PCR dengan kombinasi primer dan probeyang ditetapkan WHO. RNA virus di konversi ke cDNA menggunakan reverse transcriptase lalu diamplifikasimenggunakan taq polymerase. Produk PCR di deteksi dan diidentifikasi dengan hibridisasi menggunakanprobe spesifik. Sintesis cDNA dan reaksi PCR menggunakan primer yang dilekatkan di probe. Kombinasiprimer dan probe menghasilkan identifikasi serotipe dan intratypic differentiation (ITD dari isolat virus.Hasil: Selama tahun 2014, NPL Jakarta menerima 604 kasus AFP dari surveilans dan lima kasusterdeteksi positif mengandung virus polio. Semua spesimen positif mengandung virus polio yang berasaldari vaksin. Dua kasus positif virus polio tipe P2 (40%, satu kasus jenis virus polio P1 (20%, 1 kasusjenis virus polio P3 (20% dan satu kasus virus polio campuran jenis P1 + P2 (20%.Kesimpulan: Real-time PCR dapat digunakan di Laboratorium Polio Jakarta untuk membantu identifikasivirus Polio secara cepat. Tes ini dapat digunakan untuk memantau sirkulasi virus polio pada populasiyang rutin diimunisasi dengan OPV. (Health Science Journal of Indonesia 2016;7:27-31Kata kunci: ITD, Poliovirus, Identification, rRT-PCR AbstractBackground: The last indigenous polio was detected in 1995 but the threat of wild type polio viruses and themutation of Oral

Comparative evaluation of the CerTest VIASURE flu A, B & RSV real time RT-PCR detection kit on the BD MAX system versus a routine in-house assay for detection of influenza A and B virus during the 2016/17 influenza season

DEFF Research Database (Denmark)

Sydenham, Thomas Vognbjerg; Bek-Thomsen, Malene; Andersen, Signe Dalsgaard

2018-01-01

laboratory technician "hands on" time but also the laboratory turnaround time is of interest. OBJECTIVES: We evaluated the performance of the VIASURE Flu A, B & RSV Real Time RT-PCR Detection Kit (CerTest Biotec) for detecting Influenza A and B viruses. STUDY DESIGN: During the 2016/17 influenza season 532...

Tiempo de Dios. Tiempo de los Hombres: El Breviario de Belleville

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Ofelia Manzi

2012-11-01

Full Text Available Las imágenes cristianas, herederas de los sistemas narrativos romanos, expresaron visualmente los contenidos escriturarios. Uno de los elementos notables lo constituye la manera de representar la secuencia temporal en sus dos posibles dimensiones: humana y divina. Un recorrido por el arte cristiano tardo antiguo y medieval permite establecer de qué manera se generó una iconografía que permitió visualizar el mensaje que, de acuerdo con la correspondiente exégesis literaria, se quiso privilegiar en momentos históricos diversos. El objetivo de este trabajo es establecer de qué manera la imagen acompaña una concepción del tiempo en su doble dimensión. El Breviario de Belleville (París, siglo XIV ofrece un ejemplo en el que se conjugan ambas concepciones del transcurrir de la vida del hombre en una particular interpretación iconográfica.  

Puesta a punto del método de PCR en tiempo real para la cuantificación de Aspergillus carbonarius en uvas Vitis vinifera cv. Tannat

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Gustavo Garmendia

2011-12-01

Full Text Available La ocratoxina A (OTA es una micotoxina que ha sido detectada en uvas y vinos. Es producida por Aspergillus ochraceus, Penicillium verrucosum, Aspergillus carbonarius y especies pertenecientes al agregado Aspergillus niger. En los últimos años se ha descrito la presencia de Aspergillus aculeatus y Aspergillus japonicus en la superficie de uvas y su capacidad de producir OTA. A pesar de que la concentración detectada de cepas pertenecientes a la Sección Nigri fue < 100/g de uva, se han aislado, identificado y caracterizado 56 cepas de Aspergillus pertenecientes a la Sección Nigri. El 51 % fue identificado como A. niger, el 39 % como A. japonicus, 5 % como A. tubingensis -like y 5 % como A. foetidus. Ninguna cepa de A. carbonarius fue aislada. Debido a que esta especie ha sido descrita como la principal responsable de la presencia de OTA en uvas y vinos por su capacidad de producir altas concentraciones de OTA, se requiere un método más sensible que los métodos convencionales para detectar y cuantificar la presencia de A. carbonarius en uva. En este trabajo se optimizó la técnica de PCR en tiempo real para la detección y cuantificación de esta especie en uvas d e la variedad Tannat.

Tiempo y sucesión ecológica en Ramón Margalef

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Vargas Abarzúa, Esteban

2010-02-01

Full Text Available In this paper we attempt to think about the time in the Margalef’s ecological succession theory. In the classical model of ecological succession, populations succeed each other. Each phases of that succession “as a temporary phase” is merely juxtaposed with the other. It is the clock time, time like “measure” of the clock. Time here is absolute, independent of the process like in Newton. This does not happen in the model of Margalef. He thinks the ecosystem like a process in which energy is transfer and information acumulated. Thus, in the dynamic process of ecosystem appears various phases determined by the intrinsic dynamics of the system. Each ecosystem has its own time.

En este trabajo intentamos meditar la concepción de tiempo en la teoría de sucesión ecológica de Margalef. En un modelo clásico de sucesión ecológica, las poblaciones se suceden unas a otras. Cada fase de esa sucesión “en tanto fase temporal” está meramente yuxtapuesta a las demás fases. Es el tiempo cronométrico, el tiempo como “medida” del reloj. El tiempo es aquí algo absoluto, independiente del proceso como en Newton. Esto no ocurre en el modelo de Margalef. Él piensa el ecosistema como un proceso de transferencia de energía y acumulación de información. Por esto, en el proceso dinámico del ecosistema existen diversas fases determinadas por la dinámica intrínseca del sistema. Cada ecosistema posee así su tiempo propio.

Confiabilidad de dispositivo observable en un instante del tiempo: Aplicación a componentes de transmisión de radares

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Juan Pablo Valencia Arango

2015-08-01

Full Text Available Determinar la confiabilidad de dispositivos es una de las principales tareas de la ingeniería. En algunas situaciones experimentales sólo es posible observar el tiempo completo de falla de una unidad. Sin embargo, para chequear si está o no trabajando basta con un punto del tiempo. Bajo algunos modelos paramétricos se pueden desarrollar análisis estadísticos de estas situaciones encontrando los estimadores de máxima verosimilitud, sus distribuciones asintóticas y los intervalos de confianza. El presente trabajo tiene como objetivo presentar una propuesta metodológica para el cálculo del intervalo de confianza de un dispositivo en presencia de doble censura. Se presenta la metodología paramétrica bajo la distribución exponencial, mostrando de manera detallada el cálculo del intervalo de confianza para el tiempo medio de falla. Posteriormente se presentan simulaciones para el cálculo del nivel real y longitud media del intervalo de confianza, se encuentra que los niveles alcanzados en el caso de doble censura son muy similares a cuando se observan los tiempos completos. Los resultados son aceptables y recomendados en situaciones en las que es costosa la observación de la muestra a lo largo del tiempo. To determine the reliability of devices is one of the main tasks of engineering. In some experimental situations it is only possible to observe the full time of a drive failure. However, to check whether or not working just one point of time. Under some parametric models can develop statistical analyzes of these situations by finding the maximum likelihood estimators, their asymptotic distributions and confidence intervals. This paper aims to present a methodology for the calculation of the confidence interval of a device in the presence of double censorship. Parametric methodology under the exponential distribution is presented, showing in detail the calculation of the confidence interval for the mean time to failure. Later

Experimentation of RT-LOTOS for a critical function of a power plant instrumentation and control system

International Nuclear Information System (INIS)

Andriantsiiferana, L.; Courtiat, J.P.; De Oliveira, R.C.

1996-01-01

This document is the final report of the contract between LAAS-CNRS and the EdF Direction of Researches and Studies about the experimentation of RT-LOTOS formal description technique on a critical function of a nuclear power plant instrumentation and control system. This report comprises 4 parts: part 1 describes the RT-LOTOS (Real Time-Language of Temporal Ordering Specifications) tutorial and its RTL tool environment, the different RT-LOTOS operators and semantics, and the RTL tool main functionalities; part 2 deals with the methodology and the global architecture for the specification and validation of the CCT (Central Calculator for Treatment); part 3 gives more details about the different processes identified in the specification architecture and presents the main results obtained for the validation of the nominal functioning; part 4 describes some exceptional situations and shows how some failures and their associated recovery mechanisms can be modelled. (J.S.). 6 refs., 53 figs., 5 tabs., 2 appends

Projected Applications of a "Weather in a Box" Computing System at the NASA Short-Term Prediction Research and Transition (SPoRT) Center

Science.gov (United States)

Jedlovec, Gary J.; Molthan, Andrew; Zavodsky, Bradley T.; Case, Jonathan L.; LaFontaine, Frank J.; Srikishen, Jayanthi

2010-01-01

The NASA Short-term Prediction Research and Transition Center (SPoRT)'s new "Weather in a Box" resources will provide weather research and forecast modeling capabilities for real-time application. Model output will provide additional forecast guidance and research into the impacts of new NASA satellite data sets and software capabilities. By combining several research tools and satellite products, SPoRT can generate model guidance that is strongly influenced by unique NASA contributions.

La diferencia entre tiempo programado y efectivo en hemodiafiltración en línea: ¿Cada minuto cuenta en la eficacia dialítica?

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Ana Vanessa Fernández Martínez

Full Text Available Introducción: El factor tiempo es determinante en la eficacia de la diálisis, recomendando las European Best Practices Guides of Dialysys Adequaccy una duración semanal no inferior a 720 minutos. Los modernos monitores de diálisis interrumpen el procedimiento por auto chequeos que incrementan la seguridad. Esos minutos de diferencia no han sido tenidos en cuenta en otros resultados obtenidos, algún autor ya hace referencia a la necesidad de contemplarlos. Los objetivos del presente estudio fueron determinar la diferencia real entre el tiempo programado y el tiempo efectivo de diálisis, y una vez comprobado incrementar la duración de la sesión para hacer que el tiempo efectivo sea realmente el deseado en cada paciente, y nunca inferior a 240 minutos por sesión. Finalmente comprobamos si existen diferencias en la eficacia dialítica, midiendo el Kt y el volumen total de reinfusión. Pacientes y métodos: Diseñamos un estudio prospectivo sobre población prevalente en hemodiafiltración on-line. Reclutamos 152 pacientes en hemodiafiltración on-line. Durante 6 sesiones consecutivas (912 sesiones la diálisis se efectuó con un tiempo programado ≥ 240 minutos. En un segundo periodo 6 sesiones consecutivas (912 sesiones, la sesión de diálisis se alargó hasta un tiempo efectivo igual al previo programado. La variable principal en estudio fue el tiempo, siendo variables secundarias el flujo sanguíneo, Kt, y volumen total de reinfusión. En el segundo periodo se recogieron posibles complicaciones intradialíticas en el tiempo añadido. Resultados: Se analizan 152 pacientes, 66% hombres, de 65,7 ± 14,9 (26-88 años de edad, con una permanencia en diálisis de 56,5 ± 59,5 meses, en un total de 1824 sesiones de hemodiafiltración on-line. No se aprecian diferencias significativas en Qb (428,74±39,73 vs 429,86±38,54 ml/min. El tiempo medio de la sesión aumenta significativamente (p<0,001 en 7 minutos (de 233,58±3,29 hasta 240,67±2

Global Dynamics and International Cooperation Needs of RT Development and Utilization for the Establishment of the Northeast Asia RT Hub in Korea

Energy Technology Data Exchange (ETDEWEB)

Kim, Y. K.; Oh, G. B.; Yun, S. W.; Yang, M. H.; Ryu, J. S.; Choi, S. J.; Choi, S. G

2005-11-15

In an effort to achieve the objectives, the following scopes were categorized for in-depth study. First, analysis framework was developed for RT capacity development and international technology cooperation strategy. RT survey checklist and international technology cooperation was analyzed with interviewing and reports of domestic participants recently. Second, RT strategic environment was analyze for East-Asia hub competition/cooperation and developing nations using analysis framework. Korean RT was analyzed using SWOT analysis for establishment of RT hub in Korea. Third, East-Asian nations were classified analyzed by RT categories in standpoint of our country. Technology status and future cooperation plan were discussed about RT application for bio-medicine. Products/technology seminar related to an export was hold about support plan of admission/sales for functional food HemoHIM. This study can be utilized in the establishment of RT hub and development strategy. And it can be also utilized in promotion devising of domestic RT and planning setup for obtaing the international competitive power.

Global Dynamics and International Cooperation Needs of RT Development and Utilization for the Establishment of the Northeast Asia RT Hub in Korea

International Nuclear Information System (INIS)

Kim, Y. K.; Oh, G. B.; Yun, S. W.; Yang, M. H.; Ryu, J. S.; Choi, S. J.; Choi, S. G.

2005-11-01

In an effort to achieve the objectives, the following scopes were categorized for in-depth study. First, analysis framework was developed for RT capacity development and international technology cooperation strategy. RT survey checklist and international technology cooperation was analyzed with interviewing and reports of domestic participants recently. Second, RT strategic environment was analyze for East-Asia hub competition/cooperation and developing nations using analysis framework. Korean RT was analyzed using SWOT analysis for establishment of RT hub in Korea. Third, East-Asian nations were classified analyzed by RT categories in standpoint of our country. Technology status and future cooperation plan were discussed about RT application for bio-medicine. Products/technology seminar related to an export was hold about support plan of admission/sales for functional food HemoHIM. This study can be utilized in the establishment of RT hub and development strategy. And it can be also utilized in promotion devising of domestic RT and planning setup for obtaing the international competitive power

Real-Time Integrated Navigation System for Planetary Exploration (RT-INSPEX), Phase II

Data.gov (United States)

National Aeronautics and Space Administration — For supporting NASA's efforts in enhancing robotic autonomy and off-loading work from operators and astronauts, American GNC Corporation has developed the "Real-Time...

A plastome primer set for comprehensive quantitative real time RT-PCR analysis of Zea mays: a starter primer set for other Poaceae species

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Dunn Sade N

2008-06-01

Full Text Available Abstract Background Quantitative Real Time RT-PCR (q2(RTPCR is a maturing technique which gives researchers the ability to quantify and compare very small amounts of nucleic acids. Primer design and optimization is an essential yet time consuming aspect of using q2(RTPCR. In this paper we describe the design and empirical optimization of primers to amplify and quantify plastid RNAs from Zea mays that are robust enough to use with other closely related species. Results Primers were designed and successfully optimized for 57 of the 104 reported genes in the maize plastome plus two nuclear genes. All 59 primer pairs produced single amplicons after end-point reverse transcriptase polymerase chain reactions (RT-PCR as visualized on agarose gels and subsequently verified by q2(RTPCR. Primer pairs were divided into several categories based on the optimization requirements or the uniqueness of the target gene. An in silico test suggested the majority of the primer sets should work with other members of the Poaceae family. An in vitro test of the primer set on two unsequenced species (Panicum virgatum and Miscanthus sinensis supported this assumption by successfully producing single amplicons for each primer pair. Conclusion Due to the highly conserved chloroplast genome in plant families it is possible to utilize primer pairs designed against one genomic sequence to detect the presence and abundance of plastid genes or transcripts from genomes that have yet to be sequenced. Analysis of steady state transcription of vital system genes is a necessary requirement to comprehensively elucidate gene expression in any organism. The primer pairs reported in this paper were designed for q2(RTPCR of maize chloroplast genes but should be useful for other members of the Poaceae family. Both in silico and in vitro data are presented to support this assumption.

Real-time phase contrast magnetic resonance imaging for assessment of haemodynamics: from phantom to patients

Energy Technology Data Exchange (ETDEWEB)

Traber, Julius; Wurche, Lennart; Dieringer, Matthias A.; Utz, Wolfgang; Knobelsdorff-Brenkenhoff, Florian von; Schulz-Menger, Jeanette [Max-Delbrueck-Centrum and Charite -Medical University Berlin and HELIOS Klinikum Berlin-Buch, Department of Cardiology and Nephrology, Working Group on Cardiovascular Magnetic Resonance Imaging, Experimental and Clinical Research Center, Berlin (Germany); Greiser, Andreas [Siemens AG Healthcare Sector, Erlangen (Germany); Jin, Ning [Siemens Medical Solutions USA, Inc., Columbus, OH (United States)

2016-04-15

Assessment of haemodynamics is crucial in many cardiac diseases. Phase contrast MRI (PC-MRI) can accurately access it. Arrhythmia is a major limitation in conventional segmented PC-MRI (SEG). A real-time PC-MRI sequence (RT) could overcome this. We validated RT by comparing to SEG. A prototype RT using shared velocity encoding was tested against SEG at 1.5 T in a flow phantom and consecutively included patients with (n = 55) or without (n = 59) aortic valve disease. In patients with atrial fibrillation (Afib, n = 15), only RT was applied. Phantom: PC images were acquired in front of and behind an interchangeable aortic-stenosis-like inlay. Mean velocity and flow were quantified. Patients: PC images were acquired in the ascending aorta, pulmonary trunk and superior caval vein. Peak velocity, stroke volume and regurgitant fraction were quantified. Phantom: Mean velocities (11 ± 1 to 207 ± 10 cm/s) and flow correlated closely between SEG and RT (r ≥ 0.99, ICC ≥ 0.98, p < 0.0005). Patients without AVD or with aortic regurgitation: Concordance of SEG and RT was excellent regarding peak velocities, stroke volumes (r ≥ 0.91, ICC ≥ 0.94, p < 0.0005) and regurgitant fractions (r = 0.95, ICC = 0.95, p < 0.0005). RT was feasible in all patients with Afib. The real-time sequence is accurate compared to conventional segmented PC-MRI. Its applicability in Afib was shown. Real-time PC-MRI might become a valuable tool in arrhythmia. (orig.)

Análisis de los componentes del tiempo de reacción

OpenAIRE

Malapeira Gas, Joan Ma. (Joan Maria), 1951-2015; Honrubia Serrano, Ma. Luisa; Viader Junyent, Manel; Cosculluela Mas, Antonio; Viadé Sanzano, Albert; Ferrer Puig, Ramon

1995-01-01

En el presente trabajo se hacen una serie de consideraciones sobre la utilización de la técnica de los tiempos de reacción en diferentes campos de investigación, ejemplijicándose con experimentos en el campo de la percepción auditiva, en el estudio de los anteperiodos y en el establecimiento de la relación entre diferencias individuales, inteligencia y personalidad, y tiempos de reacción. A lo largo del trabajo se realizan varios comentarios sobre la necesidad de utilizar la información compl...

Detection of 22 common leukemic fusion genes using a single-step multiplex qRT-PCR-based assay.

Science.gov (United States)

Lyu, Xiaodong; Wang, Xianwei; Zhang, Lina; Chen, Zhenzhu; Zhao, Yu; Hu, Jieying; Fan, Ruihua; Song, Yongping

2017-07-25

Fusion genes generated from chromosomal translocation play an important role in hematological malignancies. Detection of fusion genes currently employ use of either conventional RT-PCR methods or fluorescent in situ hybridization (FISH), where both methods involve tedious methodologies and require prior characterization of chromosomal translocation events as determined by cytogenetic analysis. In this study, we describe a real-time quantitative reverse transcription PCR (qRT-PCR)-based multi-fusion gene screening method with the capacity to detect 22 fusion genes commonly found in leukemia. This method does not require pre-characterization of gene translocation events, thereby facilitating immediate diagnosis and therapeutic management. We performed fluorescent qRT-PCR (F-qRT-PCR) using a commercially-available multi-fusion gene detection kit on a patient cohort of 345 individuals comprising 108 cases diagnosed with acute myeloid leukemia (AML) for initial evaluation; remaining patients within the cohort were assayed for confirmatory diagnosis. Results obtained by F-qRT-PCR were compared alongside patient analysis by cytogenetic characterization. Gene translocations detected by F-qRT-PCR in AML cases were diagnosed in 69.4% of the patient cohort, which was comparatively similar to 68.5% as diagnosed by cytogenetic analysis, thereby demonstrating 99.1% concordance. Overall gene fusion was detected in 53.7% of the overall patient population by F-qRT-PCR, 52.9% by cytogenetic prediction in leukemia, and 9.1% in non-leukemia patients by both methods. The overall concordance rate was calculated to be 99.0%. Fusion genes were detected by F-qRT-PCR in 97.3% of patients with CML, followed by 69.4% with AML, 33.3% with acute lymphoblastic leukemia (ALL), 9.1% with myelodysplastic syndromes (MDS), and 0% with chronic lymphocytic leukemia (CLL). We describe the use of a F-qRT-PCR-based multi-fusion gene screening method as an efficient one-step diagnostic procedure as an

Touch-down reverse transcriptase-PCR detection of IgV(H) rearrangement and Sybr-Green-based real-time RT-PCR quantitation of minimal residual disease in patients with chronic lymphocytic leukemia.

Science.gov (United States)

Peková, Sona; Marková, Jana; Pajer, Petr; Dvorák, Michal; Cetkovský, Petr; Schwarz, Jirí

2005-01-01

Patients with chronic lymphocytic leukemia (CLL) can relapse even after aggressive therapy and autografts. It is commonly assumed that to prevent relapse the level of minimal residual disease (MRD) should be as low as possible. To evaluate MRD, highly sensitive quantitative assays are needed. The aim of the study was to develop a robust and sensitive method for detection of the clonal immunoglobulin heavy-chain variable (IgV(H)) rearrangement in CLL and to introduce a highly sensitive and specific methodology for MRD monitoring in patients with CLL who undergo intensive treatment. As a prerequisite for MRD detection, touch-down reverse transcriptase (RT)-PCR using degenerate primers were used for the diagnostic identification of (H) gene rearrangement(s). For quantitative MRD detection in 18 patients, we employed a real-time RT-PCR assay (RQ-PCR) making use of patient-specific primers and the cost-saving Sybr-Green reporter dye (SG). For precise calibration of RQ-PCR, patient-specific IgV(H) sequences were cloned. Touch-down RT-PCR with degenerate primers allowed the successful detection of IgV(H) clonal rearrangement(s) in 252 of 257 (98.1%) diagnostic samples. Biallelic rearrangements were found in 27 of 252 (10.7%) cases. Degenerate primers used for the identification of clonal expansion at diagnosis were not sensitive enough for MRD detection. In contrast, our RQ-PCR assay using patient-specific primers and SG reached the sensitivity of 10(-)(6). We demonstrated MRD in each patient tested, including four of four patients in complete remission following autologous hematopoietic stem cell transplantation (HSCT) and three of three following allogeneic 'mini'-HSCT. Increments in MRD might herald relapse; aggressive chemotherapy could induce molecular remission. Our touch-down RT-PCR has higher efficiency to detect clonal IgV(H) rearrangements including the biallelic ones. MRD quantitation of IgV(H) expression using SG-based RQ-PCR represents a highly specific

20th IEEE-NPSS Real Time Conference

CERN Document Server

2016-01-01

We invite you at the Centro Congressi “A. Luciani” in Padova for the 2016 Real Time Conference (RT2016). It will take place Monday 6 through Friday 10 June 2016, with optional pre-conference tutorials Sunday, June 5. Like the previous editions, RT2016 will be a multidisciplinary conference devoted to the latest developments on realtime techniques in the fields of Plasma and Nuclear Fusion, particle physics, nuclear physics and astrophysics, space science, accelerators, medical physics, nuclear power instrumentation and other radiation instrumentation.

The SPoRT concept of bracing for idiopathic scoliosis.

Science.gov (United States)

Zaina, Fabio; Fusco, Claudia; Atanasio, Salvatore; Negrini, Stefano

2011-01-01

The SPoRT (acronym: Symmetrical, Patient-oriented, Rigid, Three-dimensional, active) concept of bracing is a new way to build braces based on our 20 years of experience and the biomechanical principles of scoliosis correction, inclusive of the Sibilla and Sforzesco braces. The concept always requires a custom brace, which is made according to the patient's individual requirements. New technologies such as CAD-CAM can be applied, and often for better results, without the customary use of prebuilt forms whose measurements are stored in databases. Once the initial draft brace is completed, a final test must be made on the patient to modify and adapt it, depending on his or her real interaction between the body and the brace. The results that are today available on the SPoRT concept relate to the Sforzesco brace and are necessarily short-term, because the first treated patients are now reaching the fourth-year follow-up examination and haven't yet completed their treatments. On the basis of the initial evaluations, we can state that the Sforzesco brace is more effective than the Lyon brace after 6 months of treatment and that the Sforzesco brace is equally effective as the Risser Plast brace.

Ideología y Matemáticas: el tiempo en el análisis económico.

Directory of Open Access Journals (Sweden)

Montserrat Díaz Fernández

2000-01-01

Full Text Available La economía es una ciencia dinámica, bien por la naturaleza del objeto de estudio, bien por los instrumentos del análisis económico que permiten, por ejemplo, conocer como varía la solución de un problema cuando cambia alguno de sus elementos. Movimiento y tiempo son conceptos indisociables, e imprescindibles en el análisis económico. Analizamos aquí distintas formas de entender el tiempo y, por tanto, la evolución. En la tradición occidental el tiempo transcurre de forma lineal, siempre hacia delante. En la concepción circular la evolución es cíclica, el pasado y el futuro se suceden mutuamente. Es el mito de la reencarnación, del eterno retorno. Por último, en las culturas centroafricanas el tiempo no es más que la realización de los acontecimientos. Nos interesan fundamentalmente las consecuencias que estas ideas tienen sobre el conocimiento económico, matemático y sus aplicaciones. ¿Cómo incluir el tiempo en el análisis económico?. Las principales alternativas son los modelos continuos (formalizados mediante ecuaciones diferenciales y los modelos discretos (o en diferencias finitas. Estudiamos las ventajas, inconvenientes e implicaciones de ambos modelos, y analizamos con qué idea de tiempo se corresponden uno y otro.

Diagnosis of intestinal parasites in a rural community of Venezuela : Advantages and disadvantages of using microscopy or RT-PCR

NARCIS (Netherlands)

Incani, Renzo Nino; Ferrer, Elizabeth; Hoek, Denise; Ramak, Robbert; Roelfsema, Jeroen; Mughini-Gras, Lapo; Kortbeek, Titia M.; Pinelli, Elena

2017-01-01

A cross-sectional study was carried out to determine the prevalence and diagnostic performance of microscopy and real time PCR (RT-PCR) for 14 intestinal parasites in a Venezuelan rural community with a long history of persistent intestinal parasitic infections despite the implementation of regular

Rediseño paramétrico del pendubot para posicionamiento vertical en tiempo mínimo

Directory of Open Access Journals (Sweden)

Carlos A. Cruz-Villar

2008-01-01

Full Text Available Resumen: Se propone Una metodología de rediseilo paramétrico de sistema no lineales para control en tiempo mínimo sin restricciones de trayectoria en losestados y con control a.cotado. Tal metodología. consiste en plantear el problema de rediseño óptimo como uno de optimización dinámica, permitiendo encontrar simultáneamente los parámetros estructurales del sistema y los instantes de conrnlltación de la señal de control que minimizan el tiempo requerido para llevar al sistema de un estado inicial a uno final. Se muestran resultados experimentales del Pendubot original con control en tiempo mínimo y del Pendubot rediseñado siguiendo la metodología propuesta. Palabras clave: Diseño integrado, Rediserlo paramétrico, Optimización dinámica, Pendubot, Tiempo mínimo

SPoRT's Participation in the GOES-R Proving Ground Activity

Science.gov (United States)

Jedlovec, Gary; Fuell, Kevin; Smith, Matthew; Stano, Geoffrey; Molthan, Andrew

2011-01-01

The next generation geostationary satellite, GOES-R, will carry two new instruments with unique atmospheric and surface observing capabilities, the Advanced Baseline Imager (ABI) and the Geostationary Lightning Mapper (GLM), to study short-term weather processes. The ABI will bring enhanced multispectral observing capabilities with frequent refresh rates for regional and full disk coverage to geostationary orbit to address many existing and new forecast challenges. The GLM will, for the first time, provide the continuous monitoring of total lightning flashes over a hemispherical region from space. NOAA established the GOES-R Proving Ground activity several years ago to demonstrate the new capabilities of these instruments and to prepare forecasters for their day one use. Proving Ground partners work closely with algorithm developers and the end user community to develop and transition proxy data sets representing GOES-R observing capabilities. This close collaboration helps to maximize refine algorithms leading to the delivery of a product that effectively address a forecast challenge. The NASA Short-term Prediction Research and Transition (SPoRT) program has been a participant in the NOAA GOES-R Proving Ground activity by developing and disseminating selected GOES-R proxy products to collaborating WFOs and National Centers. Established in 2002 to demonstrate the weather and forecasting application of real-time EOS measurements, the SPoRT program has grown to be an end-to-end research to operations activity focused on the use of advanced NASA modeling and data assimilation approaches, nowcasting techniques, and unique high-resolution multispectral data from EOS satellites to improve short-term weather forecasts on a regional and local scale. Participation in the Proving Ground activities extends SPoRT s activities and taps its experience and expertise in diagnostic weather analysis, short-term weather forecasting, and the transition of research and experimental

Tiempo para un cambio

Science.gov (United States)

Woltjer, L.

1987-06-01

En la reunion celebrada en diciembre dei ano pasado informe al Consejo de mi deseo de terminar mi contrato como Director General de la ESO una vez que fuera aprobado el proyecto dei VLT, que se espera sucedera hacia fines de este aAo. Cuando fue renovada mi designacion hace tres aAos, el Consejo conocia mi intencion de no completar los cinco aAos dei contrato debido a mi deseo de disponer de mas tiempo para otras actividades. Ahora, una vez terminada la fase preparatoria para el VLT, Y habiendose presentado el proyecto formalmente al Consejo el dia 31 de marzo, y esperando su muy probable aprobacion antes dei termino de este ano, me parece que el 10 de enero de 1988 presenta una excelente fecha para que se produzca un cambio en la administracion de la ESO.

Assessment of brain reference genes for RT-qPCR studies in neurodegenerative diseases.

Science.gov (United States)

Rydbirk, Rasmus; Folke, Jonas; Winge, Kristian; Aznar, Susana; Pakkenberg, Bente; Brudek, Tomasz

2016-11-17

Evaluation of gene expression levels by reverse transcription quantitative real-time PCR (RT-qPCR) has for many years been the favourite approach for discovering disease-associated alterations. Normalization of results to stably expressed reference genes (RGs) is pivotal to obtain reliable results. This is especially important in relation to neurodegenerative diseases where disease-related structural changes may affect the most commonly used RGs. We analysed 15 candidate RGs in 98 brain samples from two brain regions from Alzheimer's disease (AD), Parkinson's disease (PD), Multiple System Atrophy, and Progressive Supranuclear Palsy patients. Using RefFinder, a web-based tool for evaluating RG stability, we identified the most stable RGs to be UBE2D2, CYC1, and RPL13 which we recommend for future RT-qPCR studies on human brain tissue from these patients. None of the investigated genes were affected by experimental variables such as RIN, PMI, or age. Findings were further validated by expression analyses of a target gene GSK3B, known to be affected by AD and PD. We obtained high variations in GSK3B levels when contrasting the results using different sets of common RG underlining the importance of a priori validation of RGs for RT-qPCR studies.

Combining of different data pools for calculating a reliable POD for real defects

Science.gov (United States)

Kanzler, Daniel; Müller, Christina; Pitkänen, Jorma

2015-03-01

Real defects are essential for the evaluation of the reliability of non destructive testing (NDT) methods, especially in relation to the integrity of components. But in most of the cases the amount of available real defects is not sufficient to evaluate the system. Model-assisted and transfer functions are one way to handle that challenge. This study is focused on a combination of different data pools to create a sufficient amount of data for the reliability estimation. A widespread approach for calculating the Probability of Detection (POD) was used on a radiographic testing (RT) method. The highest contrast to noise ratio (CNR) of each indication is usually selected as the signal in the "â vs. a" (signal-response) approach for RT. By combining real and artificial defects (flat bottom holes, side drill holes, flat bottom squares, notches, etc) in RT the highest signals are close to each other, but the process of creating and evaluating real defects is much more complex. The solution is seen in the combination of real and artificial data using a weighted least square approach. The weights for real or artificial data were based on the importance, the value and the different detection behavior of the different data. For comparison, the alternative combination through the Bayesian Updating was also applied. As verification, a data pool with a large amount of real data was available. In an advanced approach for evaluating the digital RT data, the size of the indication (perpendicular to the X-ray beam) was introduced as additional information. The signal now consists of the CNR and the area of the indication. The detectability is changing depending on the area of the indication, a fact that was ignored in the previous POD calculations for RT. This points out that a weighted least square approach to pool the data might no longer be adequate. The Bayesian Updating of the estimated parameters of the relationship between the signal field (the area of the indication) and

Combining of different data pools for calculating a reliable POD for real defects

International Nuclear Information System (INIS)

Kanzler, Daniel; Müller, Christina; Pitkänen, Jorma

2015-01-01

Real defects are essential for the evaluation of the reliability of non destructive testing (NDT) methods, especially in relation to the integrity of components. But in most of the cases the amount of available real defects is not sufficient to evaluate the system. Model-assisted and transfer functions are one way to handle that challenge. This study is focused on a combination of different data pools to create a sufficient amount of data for the reliability estimation. A widespread approach for calculating the Probability of Detection (POD) was used on a radiographic testing (RT) method. The highest contrast to noise ratio (CNR) of each indication is usually selected as the signal in the 'â vs. a' (signal-response) approach for RT. By combining real and artificial defects (flat bottom holes, side drill holes, flat bottom squares, notches, etc) in RT the highest signals are close to each other, but the process of creating and evaluating real defects is much more complex. The solution is seen in the combination of real and artificial data using a weighted least square approach. The weights for real or artificial data were based on the importance, the value and the different detection behavior of the different data. For comparison, the alternative combination through the Bayesian Updating was also applied. As verification, a data pool with a large amount of real data was available. In an advanced approach for evaluating the digital RT data, the size of the indication (perpendicular to the X-ray beam) was introduced as additional information. The signal now consists of the CNR and the area of the indication. The detectability is changing depending on the area of the indication, a fact that was ignored in the previous POD calculations for RT. This points out that a weighted least square approach to pool the data might no longer be adequate. The Bayesian Updating of the estimated parameters of the relationship between the signal field (the area of the

ReadqPCR and NormqPCR: R packages for the reading, quality checking and normalisation of RT-qPCR quantification cycle (Cq data

Directory of Open Access Journals (Sweden)

Perkins James R

2012-07-01

Full Text Available Abstract Background Measuring gene transcription using real-time reverse transcription polymerase chain reaction (RT-qPCR technology is a mainstay of molecular biology. Technologies now exist to measure the abundance of many transcripts in parallel. The selection of the optimal reference gene for the normalisation of this data is a recurring problem, and several algorithms have been developed in order to solve it. So far nothing in R exists to unite these methods, together with other functions to read in and normalise the data using the chosen reference gene(s. Results We have developed two R/Bioconductor packages, ReadqPCR and NormqPCR, intended for a user with some experience with high-throughput data analysis using R, who wishes to use R to analyse RT-qPCR data. We illustrate their potential use in a workflow analysing a generic RT-qPCR experiment, and apply this to a real dataset. Packages are available from http://www.bioconductor.org/packages/release/bioc/html/ReadqPCR.htmland http://www.bioconductor.org/packages/release/bioc/html/NormqPCR.html Conclusions These packages increase the repetoire of RT-qPCR analysis tools available to the R user and allow them to (amongst other things read their data into R, hold it in an ExpressionSet compatible R object, choose appropriate reference genes, normalise the data and look for differential expression between samples.

[Fluoroscopy dose reduction of computed tomography guided chest interventional radiology using real-time iterative reconstruction].

Science.gov (United States)

Hasegawa, Hiroaki; Mihara, Yoshiyuki; Ino, Kenji; Sato, Jiro

2014-11-01

The purpose of this study was to evaluate the radiation dose reduction to patients and radiologists in computed tomography (CT) guided examinations for the thoracic region using CT fluoroscopy. Image quality evaluation of the real-time filtered back-projection (RT-FBP) images and the real-time adaptive iterative dose reduction (RT-AIDR) images was carried out on noise and artifacts that were considered to affect the CT fluoroscopy. The image standard deviation was improved in the fluoroscopy setting with less than 30 mA on 120 kV. With regard to the evaluation of artifact visibility and the amount generated by the needle attached to the chest phantom, there was no significant difference between the RT-FBP images with 120 kV, 20 mA and the RT-AIDR images with low-dose conditions (greater than 80 kV, 30 mA and less than 120 kV, 20 mA). The results suggest that it is possible to reduce the radiation dose by approximately 34% at the maximum using RT-AIDR while maintaining image quality equivalent to the RT-FBP images with 120 V, 20 mA.

Mathematical analysis of the real time array PCR (RTA PCR) process

NARCIS (Netherlands)

Dijksman, Johan Frederik; Pierik, A.

2012-01-01

Real time array PCR (RTA PCR) is a recently developed biochemical technique that measures amplification curves (like with quantitative real time Polymerase Chain Reaction (qRT PCR)) of a multitude of different templates in a sample. It combines two different methods in order to profit from the

Ante-mortem detection of chronic wasting disease in recto-anal mucosa-associated lymphoid tissues from elk (Cervus elaphus nelsoni) using real-time quaking-induced conversion (RT-QuIC) assay: A blinded collaborative study.

Science.gov (United States)

Manne, Sireesha; Kondru, Naveen; Nichols, Tracy; Lehmkuhl, Aaron; Thomsen, Bruce; Main, Rodger; Halbur, Patrick; Dutta, Somak; Kanthasamy, Anumantha G

2017-11-02

Prion diseases are transmissible spongiform encephalopathies (TSEs) characterized by fatal, progressive neurologic diseases with prolonged incubation periods and an accumulation of infectious misfolded prion proteins. Antemortem diagnosis is often difficult due to a long asymptomatic incubation period, differences in the pathogenesis of different prions, and the presence of very low levels of infectious prion in easily accessible samples. Chronic wasting disease (CWD) is a TSE affecting both wild and captive populations of cervids, including mule deer, white-tailed deer, elk, moose, muntjac, and most recently, wild reindeer. This study represents a well-controlled evaluation of a newly developed real-time quaking-induced conversion (RT-QuIC) assay as a potential CWD diagnostic screening test using rectal biopsy sections from a depopulated elk herd. We evaluated 69 blinded samples of recto-anal mucosa-associated lymphoid tissue (RAMALT) obtained from USDA Veterinary Services. The results were later un-blinded and statistically compared to immunohistochemical (IHC) results from the USDA National Veterinary Services Laboratories (NVSL) for RAMALT, obex, and medial retropharyngeal lymph node (MRPLN). Comparison of RAMALT RT-QuIC assay results with the IHC results of RAMALT revealed 92% relative sensitivity (95% confidence limits: 61.52-99.8%) and 95% relative specificity (95% confidence limits: 85.13-99%). Collectively, our results show a potential utility of the RT-QuIC assay to advance the development of a rapid, sensitive, and specific prion diagnostic assay for CWD prions.

Tiempo y relaciones sostenibles en el espacio urbano

Directory of Open Access Journals (Sweden)

Carlos Silva

2011-01-01

Full Text Available En el texto que sigue, hacemos un recorrido por la noción de sostenibilidad y de relaciones urbanas sostenibles, resaltando el nexo entre las fuentes consultadas y un acontecimiento específico: cruzar la calle en puntos gestionados por semáforos. Además, presentamos una visión diferente de temporalidad en el marco de las mencionadas relaciones. Así, introducimos la noción de tiempo vertical oponiéndola, sin pretender sustituir, a visiones más tradicionales que ubicamos dentro de lo que llamamos tiempo horizontal. Finalmente, ejemplificamos nuestros argumentos con unas notas etnográficas extraídas de nuestro diario de campo cuya forma tiene como fondo la descripción densa (Geertz, 2003, sin llegar a ser tan exhaustiva como lo fue la producción geertziana. Para ello asumimos como sustento teórico algunos de los principios de la Teoría del Actor-Red (Latour, 2005, 2002, 2001. Concluimos que la sostenibilidad relacional urbana es una noción compleja, cuya comprensión requiere tomar en cuenta agentes humanos y no humanos, es decir, relaciones intersubjetivas y, también, interobjetivas (Latour, 2005.

Assessment of brain reference genes for RT-qPCR studies in neurodegenerative diseases

DEFF Research Database (Denmark)

Rydbirk, Rasmus; Folke, Jonas; Winge, Kristian

2016-01-01

Evaluation of gene expression levels by reverse transcription quantitative real-time PCR (RT-qPCR) has for many years been the favourite approach for discovering disease-associated alterations. Normalization of results to stably expressed reference genes (RGs) is pivotal to obtain reliable results......, and Progressive Supranuclear Palsy patients. Using RefFinder, a web-based tool for evaluating RG stability, we identified the most stable RGs to be UBE2D2, CYC1, and RPL13 which we recommend for future RT-qPCR studies on human brain tissue from these patients. None of the investigated genes were affected...... by experimental variables such as RIN, PMI, or age. Findings were further validated by expression analyses of a target gene GSK3B, known to be affected by AD and PD. We obtained high variations in GSK3B levels when contrasting the results using different sets of common RG underlining the importance of a priori...

Estimación de aportaciones deducidas a presas mediante análisis de series de tiempo estacionales.

OpenAIRE

Ariza Hernández, Isaías

2012-01-01

Para el estudio de las aportaciones deducidas, que se pueden esperar en presas, se analizan con modelos matemáticos basados en la estadística, con los que se trata de inferir el comportamiento de las variables hidrológicas, que en este caso, son las aportaciones deducidas. Dichos modelos pueden ser modelos de series de tiempo. El objetivo fundamental de este trabajo es presentar una metodología de análisis de series de tiempo estacionales cuyo dominio es el tiempo propuesto por Box y Jenki...

El tiempo en las ciudades míticas de la literatura hispanoamericana: Macondo, Comala y Santa María

Directory of Open Access Journals (Sweden)

Ksenija Vulović

2012-12-01

Full Text Available En este trabajo vamos a abordar el tema del tiempo en las ciudades míticas en las obras Cien años de soledad de Gabriel García Márquez, Pedro Páramo de Juan Rulfo y El astillero de Juan Carlos Onetti. Vamos a investigar los problemas siguientes: las relaciones entre distintas presentaciones del tiempo (lineal o circular, la supresión de las diferencias entre pasado, presente y futuro y la analogía con el concepto de la eternidad en el mito, la memoria y el olvido, la ambigüedad entre la muerte y la vida que se basa en el concepto mítico de la muerte. Por ejemplo, en Macondo de García Márquez se entrelazan el tiempo lineal de la habitación de Melquíades con el tiempo cíclico de la ficción, en Comala de Juan Rulfo se borran las fronteras entre la vida y la muerte y existe un tiempo común para todos, en Santa María de Onetti se altera el orden del tiempo común con la estructura de narradores múltiples, etc.

Evaluation of the Xpert Flu test and comparison with in-house real-time RT-PCR assays for detection of influenza virus from 2008 to 2011 in Marseille, France.

Science.gov (United States)

Salez, N; Ninove, L; Thirion, L; Gazin, C; Zandotti, C; de Lamballerie, X; Charrel, R N

2012-04-01

Rapid documentation of respiratory specimens can have an impact on the management of patients and their relatives in terms of preventive and curative measures. We compared the results of the Xpert(®) Flu assay (Cepheid) with three real-time RT-PCR assays using 127 nasopharyngeal samples, of which 75 were positive for influenza A (with 52 identified as A/H1N1-2009) and 52 were positive for influenza B. The Xpert(®) Flu assay presented a quasi-absence of non-interpretable tests, and showed sensitivity and specificity of 100% and 100% for Flu A, 98.4% and 100% for A/H1N1-2009, and 80.7% and 100% for Flu B. © 2012 The Authors. Clinical Microbiology and Infection © 2012 European Society of Clinical Microbiology and Infectious Diseases.

Estimación del valor de la información del tiempo de viaje en autopista

OpenAIRE

Soriguera Martí, Francesc

2016-01-01

De un tiempo a esta parte, un objetivo común de muchos gestores de tráfico es proporcionar información del tiempo de viaje previsto en las infraestructuras que gestionan. Estos esfuerzos responden al hecho que el tiempo de viaje es la información de tráfico que más valora el usuario. No obstante, se desconoce como cuantificar el valor de esta información y como varía en función de la precisión proporcionada. Este conocimiento permitiría realizar análisis coste – beneficio que ayudarían a la t...

Desarrollo de la Habilidad de Administración del Tiempo en directivas del primer nivel del MITRANS.

OpenAIRE

García Remus, Mayelín

2009-01-01

Valoración de cómo administran el tiempo las mujeres directivas del sector del transporte en Ciudad de La Habana. Establece las competencias individuales que pueden influir en el desarrollo de la habilidad de administración del tiempo.

Hyperthermic Fibrinolysis with rt-PA: In Vitro Results

International Nuclear Information System (INIS)

Schwarzenberg, Helmut; Mueller-Huelsbeck, Stefan; Brossman, Joachim; Christian Glueer, Claus; Bruhn, Hans Dieter; Heller, Martin

1998-01-01

Purpose: To investigate the influence of hyperthermia up to 45 deg. C on fibrinolysis with recombinant tissue-type plasminogen activator (rt-PA). Methods: Standardized fibrin clots were incubated in a water bath for 5 hr with either rt-PA (test group) or 0.9% sodium chloride (control group) and blood plasma at temperatures of 30-45 deg. C. Concentrations of D-dimer and time to complete clot lysis were measured.Results: The activity of fibrinolysis with rt-PA rose with increasing temperature: time to lysis approximately halved from 30 deg. C to 40 deg. C and the concentration of D-dimer tripled. In the control group clot size did not change.Conclusions: Activity of rt-PA-induced fibrinolysis rises distinctly with higher temperatures. Since even healthy subjects show a physiologic decline in body temperature in the extremities, in patients with occlusive arterial disease decreased activity of fibrinolysis with rt-PA can be expected. Controlled hyperthermia may improve fibrinolysis with rt-PA and should be investigated in vivo

Vectores de Killing y cantidades conservadas para espacio-tiempos cuasi-esféricos

Directory of Open Access Journals (Sweden)

J. Carot

2007-01-01

Full Text Available En este trabajo se estudian los espacio-tiempos con deformación de tipo B, con simetría axial y cuasi-esféricos. Se obtiene un elemento de linea tal que admite vectores de Killing de la familia 1 propuesta por J. Flores et. al. [1]. Se encuentran las cantidades conservadas asociadas a estos vectores de Killing y por tanto una primera integral de las ecuaciones de las geodésicas que describen una partícula libre inmersa en este tipo espacio- tiempo.

Simple, specific molecular typing of dengue virus isolates using one-step RT-PCR and restriction fragment length polymorphism.

Science.gov (United States)

Ortiz, Alma; Capitan, Zeuz; Mendoza, Yaxelis; Cisneros, Julio; Moreno, Brechla; Zaldivar, Yamitzel; Garcia, Mariana; Smith, Rebecca E; Motta, Jorge; Pascale, Juan Miguel

2012-10-01

A one-step RT-PCR and one-enzyme RFLP was used to detect and distinguish among flaviviruses, including the four serotypes of dengue and the St. Louis Encephalitis, West Nile and Yellow Fever viruses in cultured virus samples or acute-phase human serum. Using a previously described RT-PCR, but novel RFLP procedure, results are obtained in 24 h with basic PCR and electrophoresis equipment. There is 95% agreement between RT-PCR/RFLP results and those achieved by indirect immunofluorescence assays, and 100% agreement between RT-PCR/RFLP results and gene sequencing. This method is more rapid than tests of cytopathic effect based on virus isolation in tissue culture, and simpler than real-time PCR. It does not require specialized equipment, radioisotopes or computer analysis and is a method that can be applied widely in the developing world. It allows for prompt determination of whether a flavivirus is the cause of illness in a febrile patient, rapid identification of dengue serotypes in circulation, and improved patient management in cases where prior dengue exposure make dengue hemorrhagic fever or dengue shock syndrome a risk. Copyright © 2012 Elsevier B.V. All rights reserved.

Simultaneous detection of three pome fruit tree viruses by one-step multiplex quantitative RT-PCR.

Science.gov (United States)

Malandraki, Ioanna; Beris, Despoina; Isaioglou, Ioannis; Olmos, Antonio; Varveri, Christina; Vassilakos, Nikon

2017-01-01

A one-step multiplex real-time reverse transcription polymerase chain reaction (RT-qPCR) based on TaqMan probes was developed for the simultaneous detection of Apple mosaic virus (ApMV), Apple stem pitting virus (ASPV) and Apple stem grooving virus (ASGV) in total RNA of pome trees extracted with a CTAB method. The sensitivity of the method was established using in vitro synthesized viral transcripts serially diluted in RNA from healthy, virus-tested (negative) pome trees. The three viruses were simultaneously detected up to a 10-4 dilution of total RNA from a naturally triple-infected apple tree prepared in total RNA of healthy apple tissue. The newly developed RT-qPCR assay was at least one hundred times more sensitive than conventional single RT-PCRs. The assay was validated with 36 field samples for which nine triple and 11 double infections were detected. All viruses were detected simultaneously in composite samples at least up to the ratio of 1:150 triple-infected to healthy pear tissue, suggesting the assay has the capacity to examine rapidly a large number of samples in pome tree certification programs and surveys for virus presence.

Tiempo y sociedad, en el Real Seminario de Minería, 1792-1821

Directory of Open Access Journals (Sweden)

Eduardo Flores Clai

2012-02-01

Full Text Available La industria de metales preciosos, oro y plata, a finales del siglo XVIII, recibió un gran impulso de la corona española. Para ello, intentó modernizar el sistema productivo de la minería con el fin de aumentar la recaudación fiscal. El Real Seminario de Minería (RSM fue un engranaje más de esta maquinaria que tenía como objetivos difundir los conocimientos científicos, instruir a la juventud novohispana en las técnicas más modernas de explotación y refinación de minerales. En esta historia queremos llamar la atención sobre la vida académica. Abstract At the end on the 18th century, the precious metal industry, gold and silver, received a great impulse from the Spanish crown. For this, it needed to modernize the productive system of the mining with the purpose to increase the fiscal collection. The Real Seminary of Mineração (RSM was a strategy that had objectives to spread out the scientific knowledge, to instruct new Hispanic youth in the most modern techniques of exploration and mineral refinement. It is on this history that we want to call the attention of the academy. Keywords Modern School; History; Industrialization; Youth; Modernization

ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization.

Science.gov (United States)

Sang, Jian; Wang, Zhennan; Li, Man; Cao, Jiabao; Niu, Guangyi; Xia, Lin; Zou, Dong; Wang, Fan; Xu, Xingjian; Han, Xiaojiao; Fan, Jinqi; Yang, Ye; Zuo, Wanzhu; Zhang, Yang; Zhao, Wenming; Bao, Yiming; Xiao, Jingfa; Hu, Songnian; Hao, Lili; Zhang, Zhang

2018-01-04

Real-time quantitative PCR (RT-qPCR) has become a widely used method for accurate expression profiling of targeted mRNA and ncRNA. Selection of appropriate internal control genes for RT-qPCR normalization is an elementary prerequisite for reliable expression measurement. Here, we present ICG (http://icg.big.ac.cn), a wiki-driven knowledgebase for community curation of experimentally validated internal control genes as well as their associated experimental conditions. Unlike extant related databases that focus on qPCR primers in model organisms (mainly human and mouse), ICG features harnessing collective intelligence in community integration of internal control genes for a variety of species. Specifically, it integrates a comprehensive collection of more than 750 internal control genes for 73 animals, 115 plants, 12 fungi and 9 bacteria, and incorporates detailed information on recommended application scenarios corresponding to specific experimental conditions, which, collectively, are of great help for researchers to adopt appropriate internal control genes for their own experiments. Taken together, ICG serves as a publicly editable and open-content encyclopaedia of internal control genes and accordingly bears broad utility for reliable RT-qPCR normalization and gene expression characterization in both model and non-model organisms. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Tiempo libre: ¿División de la vida o integración de la misma?… ¿Esclavitud o libertad?

Directory of Open Access Journals (Sweden)

Karol Fajardo Mariño

2002-11-01

Full Text Available El tiempo libre ha sido estudiado a través de los años por distintos teóricos de las instituciones lúdicas, lo que busca este artículo es mostrar las dos tendencias principales en las que se puede agrupar el tiempo del hombre actual.Comenzando por una tendencia segmentada que gira en torno a la filosofía del trabajo y cuya esencia muestra la vida esclavizada del hombre, donde el tiempo libre es solo un espacio de una libertad disfrazada. Seguida de una tendencia holística que expone una amalgama interesante entre el tiempo libre y el tiempo de trabajo, manifestando el auge de la vida propia en el manejo de la libertad individual.

[Validation of a real time RT-PCR assay to detect foot-and-mouth disease virus and assessment of its performance in acute infection].

Science.gov (United States)

Fondevila, Norberto; Compaired, Diego; Maradei, Eduardo; Duffy, Sergio

2014-01-01

A specific real time reverse transcription polymerase chain reaction (RT-PCRrt) for the detection of foot-and-mouth disease virus was validated using the LightCycler thermocycler 2.0 and its reagents as recommended by the World Organization for Animal Health and was assessed for the detection of the virus in acute infection of cattle experimentally vaccinated and challenged with virus A Argentina/2001 or A24 Cruzeiro. The technique proved to be robust, showing coefficients of variation lower than 4% for different ARN extractions, days or repetitions and was able to detect up to 0,4 TCID 50%, and/or up to 100 RNA molecules. In probang samples, diagnostic sensitivity was 93.1 (95% CI 86.5-96.6) and diagnostic specificity 100 (95% CI 96.3-100). The results of the challenge in vaccinated or multivaccinated bovines showed that although there were high levels of clinical protection in the vaccinated group, FMDV could be detected in all challenged groups. However, detection was 100 times lower in immunized animals. Copyright © 2014 Asociación Argentina de Microbiología. Publicado por Elsevier España. All rights reserved.

Real-time continuous glucose monitoring systems in the classroom/school environment.

Science.gov (United States)

Benassi, Kari; Drobny, Jessica; Aye, Tandy

2013-05-01

Children with type 1 diabetes (T1D) spend 4-7 h/day in school with very little supervision of their diabetes management. Therefore, families have become more dependent on technology, such as use of real-time continuous glucose monitoring (RT-CGM), to provide increased supervision of their diabetes management. We sought to assess the impact of RT-CGM use in the classroom/school environment. Children with T1D using RT-CGM, their parents, and teachers completed a questionnaire about RT-CGM in the classroom/school environment. The RT-CGM was tolerated well in the classroom/school environment. Seventy percent of parents, 75% of students, and 51% of teachers found RT-CGM useful in the classroom/school environment. The students found the device to be more disruptive than did their parents and teachers. However, all three groups agreed that RT-CGM increased their comfort with diabetes management at school. Our study suggests that RT-CGM is useful and not disruptive in the classroom/school environment. The development of education materials for teachers could further increase its acceptance in the classroom/school environment.

Obstructed bi-leaflet prosthetic mitral valve imaging with real-time three-dimensional transesophageal echocardiography.

Science.gov (United States)

Shimbo, Mai; Watanabe, Hiroyuki; Kimura, Shunsuke; Terada, Mai; Iino, Takako; Iino, Kenji; Ito, Hiroshi

2015-01-01

Real-time three-dimensional transesophageal echocardiography (RT3D-TEE) can provide unique visualization and better understanding of the relationship among cardiac structures. Here, we report the case of an 85-year-old woman with an obstructed mitral prosthetic valve diagnosed promptly by RT3D-TEE, which clearly showed a leaflet stuck in the closed position. The opening and closing angles of the valve leaflets measured by RT3D-TEE were compatible with those measured by fluoroscopy. Moreover, RT3D-TEE revealed, in the ring of the prosthetic valve, thrombi that were not visible on fluoroscopy. RT3D-TEE might be a valuable diagnostic technique for prosthetic mitral valve thrombosis. © 2014 Wiley Periodicals, Inc.

Optimization of the elution buffer and concentration method for detecting hepatitis E virus in swine liver using a nested reverse transcription-polymerase chain reaction and real-time reverse transcription-polymerase chain reaction.

Science.gov (United States)

Son, Na Ry; Seo, Dong Joo; Lee, Min Hwa; Seo, Sheungwoo; Wang, Xiaoyu; Lee, Bog-Hieu; Lee, Jeong-Su; Joo, In-Sun; Hwang, In-Gyun; Choi, Changsun

2014-09-01

The aim of this study was to develop an optimal technique for detecting hepatitis E virus (HEV) in swine livers. Here, three elution buffers and two concentration methods were compared with respect to enhancing recovery of HEV from swine liver samples. Real-time reverse transcription-polymerase chain reaction (RT-PCR) and nested RT-PCR were performed to detect HEV RNA. When phosphate-buffered saline (PBS, pH 7.4) was used to concentrate HEV in swine liver samples using ultrafiltration, real-time RT-PCR detected HEV in 6 of the 26 samples. When threonine buffer was used to concentrate HEV using polyethylene glycol (PEG) precipitation and ultrafiltration, real-time RT-PCR detected HEV in 1 and 3 of the 26 samples, respectively. When glycine buffer was used to concentrate HEV using ultrafiltration and PEG precipitation, real-time RT-PCR detected HEV in 1 and 3 samples of the 26 samples, respectively. When nested RT-PCR was used to detect HEV, all samples tested negative regardless of the type of elution buffer or concentration method used. Therefore, the combination of real-time RT-PCR and ultrafiltration with PBS buffer was the most sensitive and reliable method for detecting HEV in swine livers. Copyright © 2014 Elsevier B.V. All rights reserved.

One-step cross-genogroup multiplex RT-qPCR with an internal control system for the detection of infectious pancreatic necrosis virus (IPNV).

Science.gov (United States)

Hoferer, Marc; Braun, Anne; Skrypski, Julia; Bock, Sabine; Thalheim, Sabine; Sting, Reinhard

2017-09-01

Infectious pancreatic necrosis virus (IPNV) causes great losses in fish hatcheries world-wide. The detection of IPNV can be challenging in certain circumstances, particularly due to low viral load and the genetic variability of this RNA virus. For the first time, this project created a quantitative triplex real-time reverse transcription PCR (RT-qPCR), including an endogenous control system, for specific, sensitive and rapid detection of IPNV in routine diagnostics. Multiple sequence alignment of 46 nucleotide sequences of the segment A genome obtained from the NCBI database allowed the design of two RT-qPCR systems covering the IPNV genogroup 1 and genogroups 2-5, respectively. The completed triplex RT-qPCR including a salmonid-specific endogenous control showed high specificity and an analytical sensitivity of 20-40 oligonucleotide copies. Testing of dilution series of virus-loaded cell culture suspensions proved equality of the triplex RT-qPCR with virus detection in cell culture and a higher sensitivity than conventional RT-PCR in field samples. In comparative studies of a total of 77 field samples tested, 51 showed identical positive and 19 identical negative results in cell culture and the triplex RT-qPCR. However, seven other samples yielded positive results in the triplex RT-qPCR, but negative results in cell culture. Copyright © 2017 Elsevier B.V. All rights reserved.

Modelado sólido y análisis por elementos finitos de un cilindro de motor endotérmico de 2 tiempos de altas prestaciones

OpenAIRE

Pérez Ferreirós, Oscar

2005-01-01

El proyecto pretende explicar el proceso de evolución de un cilindro monobloque de motor endotérmico, 2 tiempos de altas prestaciones. El proceso real de evolución del motor consta de los siguientes pasos: - Modelado en 3D del cilindro, de una forma sencilla para que sea fácilmente modificable (modelado con Pro-Engineer WildFire). - Hipótesis de cálculo para realizar un cálculo de esfuerzos sobre los pernos que fijan el culatín y la culata del cilindro (Se proponen 2 estudio...

Application of radio frequency based digital thermometer for real-time monitoring of dairy cattle rectal temperature

Directory of Open Access Journals (Sweden)

Tridib Debnath

2017-09-01

Full Text Available Aim: Dairy cattle health monitoring program becomes vital for detecting the febrile conditions to prevent the outbreak of the animal diseases as well as ensuring the fitness of the animals that are directly affecting the health of the consumers. The aim of this study was to validate real-time rectal temperature (RT data of radio frequency based digital (RFD thermometer with RT data of mercury bulb (MB thermometer in dairy cattle. Materials and Methods: Two experiments were conducted. In experiment I, six female Jersey crossbred cattle with a mean (±standard error of the mean body weight of 534.83±13.90 kg at the age of 12±0.52 years were used to record RT for 2 h on empty stomach and 2 h after feeding at 0, 30, 60, 90, and 120 min using a RFD thermometer as well as a MB thermometer. In experiment II, six female Jersey crossbred cattle were further used to record RT for 2 h before exercise and 2 h after exercise at 0, 30, 60, 90, and 120 min. Two-way repeated measures analysis of variance with post hoc comparisons by Bonferroni test was done. Results: Real-time RT data recorded by RFD thermometer as well as MB thermometer did not differ (p>0.05 before and after feeding/exercise. An increase (p<0.05 in RT after feeding/exercise in experimental crossbred cattle was recorded by both RFD thermometer and MB thermometer. Conclusion: The results obtained in the present study suggest that the body temperature recordings from RFD thermometer would be acceptable and thus RFD thermometer could work well for monitoring real-time RT in cattle.

Arvo Pärt: Kui kannatab üks inimene, siis kannatab kogu maailm! / Arvo Pärt, Nora Pärt ; intervjueerinud Yana Toom, Maarja-Liis Arujärv, Aleksandr Zukerman ; kommenteerinud Edgar Savisaar

Index Scriptorium Estoniae

Pärt, Arvo, 1935-

2010-01-01

Arvo Pärt ja tema abikaasa Nora Pärt andsid Türgis enne Pärdi uudisteose "Aadama itk" esiettekannet intervjuu, kus rääkisid nii nende raskustest Läände elama asumisel kui uudisteose sügavamast mõttest

Tiempo histórico y tiempo mítico entre los mayas del Periodo Clásico (ss. II-X d.C.

Directory of Open Access Journals (Sweden)

Lacadena García-Gallo, Alfonso

2004-06-01

Full Text Available The use and development of a rather precise calendrical system enabled the Maya of the Classic Period of this Mesoamerican civilization (centuries 2^nd through 10^th A. D. to turn time into an habitable space. For them, time was like a path leading to either the past, in the form of an historical record registered in written documents, or the future, by way of forecasts and prophecies. Compared to other archaic cultures or early civilizations, the Classic Maya has been known for years for the peculiarity of having a linear, historical concept of time, including absolute dating. Yet the decipherment of the hieroglyphic inscriptions has revealed that this historical concept of time meshed with mythical time to make up a single temporal dimension —which was at once linear and cyclical— for the actions of men as well as gods. With obsessive accuracy and recurrence, the Classic Maya used calendrical Information as mortar for the construction of an historical (especially political and religious discourse on their monuments, full of cross references to contemporary, past and even future events in texts commemorating anniversaries in several calendarial cycles.

La utilización y desarrollo de un sistema calendárico sumamente preciso permitió a los mayas del Periodo Clásico de esta civilización mesoamericana (siglos II-X d.C. hacer del tiempo un espacio habitable. Para ellos, el tiempo era un sendero por el que era posible transitar o bien hacia el pasado, en forma de memoria histórica consignada en textos escritos, o bien hacia el futuro, mediante predicciones y profecías. Lo que es una rareza en comparación con otras culturas arcaicas o primeras civilizaciones, la clásica de los mayas incluía un concepto de tiempo histórico de carácter lineal, con dataciones absolutas. Pero el desciframiento de las inscripciones jeroglíficas está revelando que este tiempo histórico estaba integrado con el mítico en una

Algoritmo genético para reducir el makespan en un flow shop híbrido flexible con máquinas paralelas no relacionadas y tiempos de alistamiento dependientes de la secuencia

Directory of Open Access Journals (Sweden)

Juan Camilo López-Vargas

2015-01-01

Full Text Available El artículo propone el algoritmo genético simple o estándar (AGS como enfoque de solución al problema de programación de produc - ción para un ambiente tipo flow shop híbrido flexible minimizando el makespan. La codificación del algoritmo propuesto permite obtener resultados con tiempos de cómputo bastante razonables y con un nivel de convergencia del makespan cercano al 2%, con mejores solu - ciones que un algoritmo alternativo diseñado para el mismo caso de programación de producción. A partir de los resultados obtenidos en el proceso de experimentación y del posterior análisis comparativo, se concluye que a partir del modelamiento más completo de las condiciones reales de producción, el algoritmo genético ejecuta la programación de producción reduciendo el tiempo máximo de procesamiento, o makespan. En futuros trabajos, el enfoque de investigación será la búsqueda de más escenarios alternativos de producción, con el fin de incrementar la aplicación de este tipo de herramientas y generar impacto en los entornos empresariales reales.

Velocity-gauge real-time TDDFT within a numerical atomic orbital basis set

Science.gov (United States)

Pemmaraju, C. D.; Vila, F. D.; Kas, J. J.; Sato, S. A.; Rehr, J. J.; Yabana, K.; Prendergast, David

2018-05-01

The interaction of laser fields with solid-state systems can be modeled efficiently within the velocity-gauge formalism of real-time time dependent density functional theory (RT-TDDFT). In this article, we discuss the implementation of the velocity-gauge RT-TDDFT equations for electron dynamics within a linear combination of atomic orbitals (LCAO) basis set framework. Numerical results obtained from our LCAO implementation, for the electronic response of periodic systems to both weak and intense laser fields, are compared to those obtained from established real-space grid and Full-Potential Linearized Augmented Planewave approaches. Potential applications of the LCAO based scheme in the context of extreme ultra-violet and soft X-ray spectroscopies involving core-electronic excitations are discussed.

Evaluation of the expression of internal control transcripts by real ...

African Journals Online (AJOL)

Evaluation of the expression of internal control transcripts by real-time RT-PCR analysis during tomato flower abscission. Song Gao, Tao Xu, Mingfang Qi, Yufeng Liu, Hong Li, Shuangshuang Lv, Jinhong Li, Tianlai Li ...

Diagnostic evaluation of a multiplexed RT-PCR microsphere array assay for the detection of foot-and-mouth disease virus and look-alike disease viruses

Energy Technology Data Exchange (ETDEWEB)

Hindson, B J; Reid, S M; Baker, B R; Ebert, K; Ferris, N P; Bentley Tammero, L F; Lenhoff, R J; Naraghi-Arani, P; Vitalis, E A; Slezak, T R; Hullinger, P J; King, D P

2007-07-26

A high-throughput multiplexed assay was developed for the differential laboratory diagnosis of foot-and-mouth disease virus (FMDV) from viruses which cause clinically similar diseases of livestock. This assay simultaneously screens for five RNA and two DNA viruses using multiplexed reverse transcription PCR (mRT-PCR) amplification coupled with a microsphere hybridization array and flow-cytometric detection. Two of the seventeen primer-probe sets included in this multiplex assay were adopted from previously characterized real-time RT-PCR (rRT-PCR) assays for FMDV. The diagnostic accuracy of the mRT-PCR was evaluated using 287 field samples, including 248 (true positive n= 213, true negative n=34) from suspect cases of foot-and-mouth disease collected from 65 countries between 1965 and 2006 and 39 true negative samples collected from healthy animals. The mRT-PCR assay results were compared with two singleplex rRT-PCR assays, using virus isolation with antigen-ELISA as the reference method. The diagnostic sensitivity of the mRT-PCR assay for FMDV was 93.9% [95% C.I. 89.8-96.4%], compared to 98.1% [95% C.I. 95.3-99.3%] for the two singleplex rRT-PCR assays used in combination. In addition, the assay could reliably differentiate between FMDV and other vesicular viruses such as swine vesicular disease virus and vesicular exanthema of swine virus. Interestingly, the mRT-PCR detected parapoxvirus (n=2) and bovine viral diarrhea virus (n=2) in clinical samples, demonstrating the screening potential of this mRT-PCR assay to identify viruses in FMDV-negative material not previously recognized using focused single-target rRT-PCR assays.

Disposición a pagar por reducir el tiempo de viaje en Tunja (Colombia: Comparación entre estudiantes y trabajadores con un modelo Logit mixto

Directory of Open Access Journals (Sweden)

Luis Gabriel Marquez Diaz

2013-01-01

Full Text Available Resumen: El estudio analiza la diferencia en la disposición a pagar de estudiantes y trabajadores por reducir el tiempo de viaje, en un contexto de elección de modo de transporte para la ciudad de Tunja (Colombia. Se utilizó un modelo logit mixto, calibrado con datos provenientes de una encuesta de preferencias declaradas. La especificación del modelo supuso la variación aleatoria de los coeficientes del tiempo de acceso, tiempo de espera y tiempo de viaje. Se encontró que la disposición a pagar por reducir el tiempo de viaje es de 38.14 $/min para estudiantes, siendo 23% mayor para trabajadores de menor ingreso y 73% mayor para los trabajadores de mayor ingreso. Se determinó que el valor del tiempo de espera es 1.95 veces mayor que el tiempo viaje, en tanto que el tiempo de acceso mantiene una relación de 1 a 2.57 con respecto al tiempo de viaje, la cual se considera válida únicamente para el contexto estudiado.

Retrasos en la medición del tiempo con el uso de computadoras en la investigación del Tiempo de Reacción : una revisión sistemática

OpenAIRE

Crocetta, Tania Brusque; Andrade, Alexandro

2015-01-01

El tiempo de reacción (TR) es una medida sensible y se ha aplicado en la Psicología moderna y la Psicología del Deporte y del Ejercicio. Este estudio tuvo como objetivo identificar los posibles retrasos en la medición del tiempo con el uso de computadoras en la investigación con TR mediante el análisis de la producción científica de los artículos publicados en la base de datos electrónica Web of Science® de la Thomson Reuters Web of KnowledgeSM . Los items investigados fueron: tema central de...

NASA SPoRT Initialization Datasets for Local Model Runs in the Environmental Modeling System

Science.gov (United States)

Case, Jonathan L.; LaFontaine, Frank J.; Molthan, Andrew L.; Carcione, Brian; Wood, Lance; Maloney, Joseph; Estupinan, Jeral; Medlin, Jeffrey M.; Blottman, Peter; Rozumalski, Robert A.

2011-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center has developed several products for its National Weather Service (NWS) partners that can be used to initialize local model runs within the Weather Research and Forecasting (WRF) Environmental Modeling System (EMS). These real-time datasets consist of surface-based information updated at least once per day, and produced in a composite or gridded product that is easily incorporated into the WRF EMS. The primary goal for making these NASA datasets available to the WRF EMS community is to provide timely and high-quality information at a spatial resolution comparable to that used in the local model configurations (i.e., convection-allowing scales). The current suite of SPoRT products supported in the WRF EMS include a Sea Surface Temperature (SST) composite, a Great Lakes sea-ice extent, a Greenness Vegetation Fraction (GVF) composite, and Land Information System (LIS) gridded output. The SPoRT SST composite is a blend of primarily the Moderate Resolution Imaging Spectroradiometer (MODIS) infrared and Advanced Microwave Scanning Radiometer for Earth Observing System data for non-precipitation coverage over the oceans at 2-km resolution. The composite includes a special lake surface temperature analysis over the Great Lakes using contributions from the Remote Sensing Systems temperature data. The Great Lakes Environmental Research Laboratory Ice Percentage product is used to create a sea-ice mask in the SPoRT SST composite. The sea-ice mask is produced daily (in-season) at 1.8-km resolution and identifies ice percentage from 0 100% in 10% increments, with values above 90% flagged as ice.

Engineering development of an HTS floating coil for the Mini-RT project

International Nuclear Information System (INIS)

Yanagi, Nagato; Mito, Toshiyuki; Morikawa, Junji

2004-01-01

A magnetically-levitated superconducting coil device, Mini-RT, has been constructed using a high temperature superconductor (HTS) for the purpose of examining a new magnetic confinement scheme of high-beta non-neutral plasmas. The floating coil is wound with silver-sheathed Bi-2223 tapes, and it is operated in the temperature range of 20-40 K. A number of studies and experiments were carried out in order to realize the necessary system. One of them was to demonstrate magnetic levitation using a miniature HTS floating coil having a diameter of 80 mm. The coil was fabricated using Bi-2223/Ag tapes of 12 m and excited by field cooling with liquid nitrogen. The magnetic levitation was examined using a real-time feedback control system with laser displacement gauges. Additionally, a persistent current switch (PCS) has been developed using Bi-2223/Ag tapes of 21 m, and a prototype HTS-PCS was tested in a cryostat. After construction of the floating coil and HTS-PCS for the Mini-RT device was completed, excitation tests were carried out in the cryostat and the basic properties up to the nominal operation condition were examined. (author)

Monitoring Elite Soccer Players' External Loads Using Real-Time Data.

Science.gov (United States)

Barrett, Steve

2017-11-01

To assess the validity of measuring locomotor activities and PlayerLoad using real-time (RT) data collection during soccer training. Twenty-nine English soccer players participated. Each player wore the same MEMS device (Micromechanical Electrical Systems; S5, Optimeye; CatapultSports, Melbourne, Australia) during 21 training sessions (N = 331 data sets) in the 2015-16 and 2016-17 seasons. An RT receiver (TRX; Catapultsports, Melbourne, Australia) was used to collect the locomotor activities and PlayerLoad data in RT and compared with the postevent downloaded (PED) data. PlayerLoad and locomotor activities (total distance covered; total high-speed running distance covered, >5.5#x00A0;m/s; total sprinting distance covered, >7 m/s; maximum velocity) were analyzed. Correlations were near perfect for all variables analyzed (r = .98-1.00), with a varied level of noise between RT and PED also (0.3-9.7% coefficient of variation). Locomotor activities and PlayerLoad can use both RT and PED concurrently to quantify a player's physical output during a training session. Caution should be taken with higher-velocity-based locomotor activities during RT compared to PED.

Parejas viables que perduran en el tiempo

Directory of Open Access Journals (Sweden)

Juan José Cuervo Rodríguez

2013-01-01

Full Text Available El presente artículo científico presenta resultados del proceso llevado a cabo en el proyecto de investigación docente "Mecanismos de autorregulación en parejas viables que perduran en el tiempo". Se soporta en una mirada compleja de la psicología basada en una epistemología de la construcción. En el ámbito metodológico, se inscribe en los estudios de terapia familiar desde una perspectiva de la comunicación humana como un todo integrado. Participaron nueve parejas. Los criterios de inclusión fueron: cinco o más años de convivencia, participación voluntaria, no presentar (ni haber presentado problemáticas especiales que ameriten intervención psicoterapéutica y la obtención de un porcentaje significativo en el uso de estrategias de comunicación asertiva en la resolución de conflictos. El método general utilizado fue el análisis de la comunicación en tarea de conversación. Los principales hallazgos señalan una estrecha relación entre el contexto de desarrollo de las parejas, la emergencia de códigos comunicacionales propios y la posibilidad de perdurar en el tiempo; también, se resalta el tipo de comunicación asertiva o constructiva, la construcción de valores como el respeto y la aceptación de las diferencias, y el deseo por vivir y construir bienestar común, como elementos constitutivos de su identidad como pareja.

Tantsuime: märjaks nutetud Märt Agu saab 8000 uut sõpra / Märt Agu ; intervjueerinud Rein Sikk

Index Scriptorium Estoniae

Agu, Märt, 1980-

2011-01-01

11. Noorte tantsupeo "Maa ja ilm" üldjuht ja Tallinna Tantsuakadeemia kunstiline juht Märt Agu Tallinna lauluväljakul toimuvast tantsupeost, ülevaatustest, eesti meeste rahvatantsust, oma isast Mait Agust, tema tantsust "Põhjamaa", tantsuõpetaja elukutsest, eesti tantsust, Tallinna Tantsuakadeemiast. Andmeid Märt Agu loomingu kohta

Diseño e implementación de un sistema de adquisición de datos sismológicos en tiempo real

Directory of Open Access Journals (Sweden)

Vega V. Pedro A.

2001-08-01

Full Text Available

The proposed objective was the design, characterization and setting in operation of a real time data acquisition system. Starting with LAC type existent seismometer for which was implemented the software and hardware required to obtain the seismological registration station. The selected hardware was a National Instruments data acquisition card DAQ-516, this board has 8 analog input channels (16 bit and 50 ks/s. The used software LabVIEW 6.0 was also National Instruments which is a graphic programming software that controls all card's data acquisition possibilities and additionally has powerful data handling tools. The other system components are a portable computer and a signal conditioning card. Once implemented and proven the data acquisition system, we proceeded to carry out the characterization of the system. Here the instrumental noise was determined, and the sensor was "characterized for this a shaking table was designed and built. By means of an Internet connection, the system's internal clock synchronization is carried out by means of ATOMTIME 98 software.

EI objetivo propuesto fue el diseño, caracterización y puesta en operación de un sistema de adquisición de datos en tiempo real. Para lograrlo se partió de un sismómetro existente tipo L-4C con base en el cual se implementaron el software y hardware requeridos para obtener la estación de registro sismológico. EI hardware seleccionado fue una tarjeta de adquisición de datos fabricada por National Instruments, referencia DAQ-516, la cual entre sus principales características cuenta con ocho canales de entrada analógica, y una rata de muestreo de 50.000 muestras por segundo. EI software utilizado fue el LabVIEW 6

Viajes por el tiempo y otras perplejidades matemáticas

OpenAIRE

Méndez, José Manuel

2011-01-01

Se presenta una breve descripción de los contenidos de cada uno de los artículos de el libro Viajes por el tiempo y otras perplejidades matemáticas. De algunos capítulos se puede extraer material didáctico para llevar a las aulas de enseñanza secundaria.

UNA POLÍTICA ALIMENTARIA PARA TIEMPOS DE CRISIS

Directory of Open Access Journals (Sweden)

Gustavo Gordillo

2012-01-01

Full Text Available Este artículo revisa el concepto de seguridad alimentaria. A partir de éste sugiere que es necesario considerar tanto la producción como el acceso a los alimentos como parte de una misma estrategia. Esto requiere implicar y al mismo tiempo fortalecer las capacidades nacionales, regionales y de las comunidades locales, prio-rizar el potencial de las comunidades, los agricultores y los ciudadanos de construir y apropiarse de las políticas alimentarias y de manera señalada la promoción a redes locales y regionales de productores de alimentos y consumidores. Argumenta que el propósito de entrecruzar en vez de confrontar el discurso de la seguridad alimen-taria y de la soberanía es una de las vías para avanzar en la discusión. Asimismo, argumenta que el significado de una política alimentaria en tiempos de crisis parte de la necesidad de enfrentar la desarticulación productiva y la desintegración social prevalecientes en el medio rural con una estrategia de reconstrucción institucional basada en la autonomía de los habitantes rurales y en una dinámica de intervencio-nes estatales a partir de una elaboración institucional inteligente capaz de aprender y adaptarse a las situaciones heterogéneas y cambiantes en el ámbito rural.

Cien años de soledad : Una aproximación al estudio del tiempo

OpenAIRE

Cortés, Karina Alejandra; Valesini, María Silvina

2006-01-01

Este trabajo analiza el tratamiento del tiempo en la novela de Gabriel García Márquez Cien años de soledad. Se considera que, dentro de las múltiples miradas que la obra posibilita, la del tiempo es una de las más pregnantes. En esta obra es recurrente y deriva en conceptos relacionados tales como la memoria, el olvido, la muerte. Facultad de Bellas Artes

RT-Symmetric Laplace Operators on Star Graphs: Real Spectrum and Self-Adjointness

Directory of Open Access Journals (Sweden)

Maria Astudillo

2015-01-01

Full Text Available How ideas of PT-symmetric quantum mechanics can be applied to quantum graphs is analyzed, in particular to the star graph. The class of rotationally symmetric vertex conditions is analyzed. It is shown that all such conditions can effectively be described by circulant matrices: real in the case of odd number of edges and complex having particular block structure in the even case. Spectral properties of the corresponding operators are discussed.

Real-Time Three-Dimensional Echocardiography: Characterization of Cardiac Anatomy and Function-Current Clinical Applications and Literature Review Update.

Science.gov (United States)

Velasco, Omar; Beckett, Morgan Q; James, Aaron W; Loehr, Megan N; Lewis, Taylor G; Hassan, Tahmin; Janardhanan, Rajesh

2017-01-01

Our review of real-time three-dimensional echocardiography (RT3DE) discusses the diagnostic utility of RT3DE and provides a comparison with two-dimensional echocardiography (2DE) in clinical cardiology. A Pubmed literature search on RT3DE was performed using the following key words: transthoracic, two-dimensional, three-dimensional, real-time, and left ventricular (LV) function. Articles included perspective clinical studies and meta-analyses in the English language, and focused on the role of RT3DE in human subjects. Application of RT3DE includes analysis of the pericardium, right ventricular (RV) and LV cavities, wall motion, valvular disease, great vessels, congenital anomalies, and traumatic injury, such as myocardial contusion. RT3DE, through a transthoracic echocardiography (TTE), allows for increasingly accurate volume and valve motion assessment, estimated LV ejection fraction, and volume measurements. Chamber motion and LV mass approximation have been more accurately evaluated by RT3DE by improved inclusion of the third dimension and quantification of volumetric movement. Moreover, RT3DE was shown to have no statistical significance when comparing the ejection fractions of RT3DE to cardiac magnetic resonance (CMR). Analysis of RT3DE data sets of the LV endocardial exterior allows for the volume to be directly quantified for specific phases of the cardiac cycle, ranging from end systole to end diastole, eliminating error from wall motion abnormalities and asymmetrical left ventricles. RT3DE through TTE measures cardiac function with superior diagnostic accuracy in predicting LV mass, systolic function, along with LV and RV volume when compared with 2DE with comparable results to CMR.

Real-Time Three-Dimensional Echocardiography: Characterization of Cardiac Anatomy and Function—Current Clinical Applications and Literature Review Update

Directory of Open Access Journals (Sweden)

Morgan Q. Beckett

2017-03-01

Full Text Available Our review of real-time three-dimensional echocardiography (RT3DE discusses the diagnostic utility of RT3DE and provides a comparison with two-dimensional echocardiography (2DE in clinical cardiology. A Pubmed literature search on RT3DE was performed using the following key words: transthoracic, two-dimensional, three-dimensional, real-time, and left ventricular (LV function. Articles included perspective clinical studies and meta-analyses in the English language, and focused on the role of RT3DE in human subjects. Application of RT3DE includes analysis of the pericardium, right ventricular (RV and LV cavities, wall motion, valvular disease, great vessels, congenital anomalies, and traumatic injury, such as myocardial contusion. RT3DE, through a transthoracic echocardiography (TTE, allows for increasingly accurate volume and valve motion assessment, estimated LV ejection fraction, and volume measurements. Chamber motion and LV mass approximation have been more accurately evaluated by RT3DE by improved inclusion of the third dimension and quantification of volumetric movement. Moreover, RT3DE was shown to have no statistical significance when comparing the ejection fractions of RT3DE to cardiac magnetic resonance (CMR. Analysis of RT3DE data sets of the LV endocardial exterior allows for the volume to be directly quantified for specific phases of the cardiac cycle, ranging from end systole to end diastole, eliminating error from wall motion abnormalities and asymmetrical left ventricles. RT3DE through TTE measures cardiac function with superior diagnostic accuracy in predicting LV mass, systolic function, along with LV and RV volume when compared with 2DE with comparable results to CMR.

Variation in Bluetongue virus real-time reverse transcription polymerase chain reaction assay results in blood samples of sheep, cattle, and alpaca.

Science.gov (United States)

Brito, Barbara P; Gardner, Ian A; Hietala, Sharon K; Crossley, Beate M

2011-07-01

Bluetongue is a vector-borne viral disease that affects domestic and wild ruminants. The epidemiology of this disease has recently changed, with occurrence in new geographic areas. Various real-time quantitative reverse transcription polymerase chain reaction (real-time qRT-PCR) assays are used to detect Bluetongue virus (BTV); however, the impact of biologic differences between New World camelids and domestic ruminant samples on PCR efficiency, for which the BTV real-time qRT-PCR was initially validated are unknown. New world camelids are known to have important biologic differences in whole blood composition, including hemoglobin concentration, which can alter PCR performance. In the present study, sheep, cattle, and alpaca blood were spiked with BTV serotypes 10, 11, 13, and 17 and analyzed in 10-fold dilutions by real-time qRT-PCR to determine if species affected nucleic acid recovery and assay performance. A separate experiment was performed using spiked alpaca blood subsequently diluted in 10-fold series in sheep blood to assess the influence of alpaca blood on performance efficiency of the BTV real-time qRT-PCR assay. Results showed that BTV-specific nucleic acid detection from alpaca blood was consistently 1-2 logs lower than from sheep and cattle blood, and results were similar for each of the 4 BTV serotypes analyzed.

Soluciones analiticas AL problema de jets con velocidad de eyeccion variable EN EL tiempo.

Science.gov (United States)

Canto, J.; Raga, A. C.; D'Alessio, P.

1998-11-01

Se presenta un nuevo metodo que permite resolver de manera exacta y analitica las ecuaciones que describen un jet hipersonico con velocidad de eyeccion variable en el tiempo. El metodo se basa en consideraciones sencillas de conservacion de momento para las superficies de trabajo que se forman en el interior del jet. Como ejemplo, se presentan soluciones para jets con variacion sinusoidal en la velocidad de eyeccion, y tambien para el caso de un incremento lineal en el tiempo. Estas soluciones analiticas tienen una clara aplicacion en la interpretacion de las observaciones de jets asociados a objetos Herbig-Haro.

Evaluation of a multiplex real-time PCR assay for the detection of respiratory viruses in clinical specimens.

Science.gov (United States)

Rheem, Insoo; Park, Joowon; Kim, Tae-Hyun; Kim, Jong Wan

2012-11-01

In this study, we evaluated the analytical performance and clinical potential of a one-step multiplex real-time PCR assay for the simultaneous detection of 14 types of respiratory viruses using the AdvanSure RV real-time PCR Kit (LG Life Sciences, Korea). Three hundred and twenty clinical specimens were tested with the AdvanSure RV real-time PCR Kit and conventional multiplex reverse transcription (RT)-PCR assay. The assay results were analyzed and the one-step AdvanSure RV real-time PCR Kit was compared with the conventional multiplex RT-PCR assay with respect to the sensitivity and specificity of the detection of respiratory viruses. The limit of detection (LOD) was 1.31 plaque-forming units (PFU)/mL for human rhinoviruses (hRVs), 4.93 PFU/mL for human coronavirus HCoV-229E/NL63, 2.67 PFU/mL for human coronavirus HCoV-OC43, 18.20 PFU/mL for parainfluenza virus 1 (PIV)-1, 24.57 PFU/mL for PIV-2, 1.73 PFU/mL for PIV-3, 1.79 PFU/mL for influenza virus group (Flu) A, 59.51 PFU/mL for FluB, 5.46 PFU/mL for human respiratory syncytial virus (hRSV)-A, 17.23 PFU/mL for hRSV-B, 9.99 PFU/mL for human adenovirus (ADVs). The cross-reactivity test for this assay against 23 types of non-respiratory viruses showed negative results for all viruses tested. The agreement between the one-step AdvanSure multiplex real-time PCR assay and the conventional multiplex RT-PCR assay was 98%. The one-step AdvanSure RV multiplex real-time PCR assay is a simple assay with high potential for specific, rapid and sensitive laboratory diagnosis of respiratory viruses compared to conventional multiplex RT-PCR.

NASA SPoRT GOES-R Proving Ground Activities

Science.gov (United States)

Stano, Geoffrey T.; Fuell, Kevin K.; Jedloec, Gary J.

2010-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) program is a partner with the GOES-R Proving Ground (PG) helping prepare forecasters understand the unique products to come from the GOES-R instrument suite. SPoRT is working collaboratively with other members of the GOES-R PG team and Algorithm Working Group (AWG) scientists to develop and disseminate a suite of proxy products that address specific forecast problems for the WFOs, Regional and National Support Centers, and other NOAA users. These products draw on SPoRT s expertise with the transition and evaluation of products into operations from the MODIS instrument and the North Alabama Lightning Mapping Array (NALMA). The MODIS instrument serves as an excellent proxy for the Advanced Baseline Imager (ABI) that will be aboard GOES-R. SPoRT has transitioned and evaluated several multi-channel MODIS products. The true and false color products are being used in natural hazard detection by several SPoRT partners to provide better observation of land features, such as fires, smoke plumes, and snow cover. Additionally, many of SPoRT s partners are coastal offices and already benefit from the MODIS sea surface temperature composite. This, along with other surface feature observations will be developed into ABI proxy products for diagnostic use in the forecast process as well as assimilation into forecast models. In addition to the MODIS instrument, the NALMA has proven very valuable to WFOs with access to these total lightning data. These data provide situational awareness and enhanced warning decision making to improve lead times for severe thunderstorm and tornado warnings. One effort by SPoRT scientists includes a lightning threat product to create short-term model forecasts of lightning activity. Additionally, SPoRT is working with the AWG to create GLM proxy data from several of the ground based total lightning networks, such as the NALMA. The evaluation will focus on the vastly improved spatial

Reverse transcriptase-quantitative polymerase chain reaction (RT ...

African Journals Online (AJOL)

The reverse transcriptase quantitative polymerase chain reaction (RT-qPCR) is a highly specific polymerase chain reaction (PCR) method that allows one to detect very low transcription levels of functional gene(s) in soil. RT-qPCR helps us to know the active members of the microbial community, and their activities can be ...

Optimization of a magnetic capture RT-LAMP assay for fast and real-time detection of potato virus Y and differentiation of N and O serotypes.

Science.gov (United States)

Treder, Krzysztof; Chołuj, Joanna; Zacharzewska, Bogumiła; Babujee, Lavanya; Mielczarek, Mateusz; Burzyński, Adam; Rakotondrafara, Aurélie M

2018-02-01

Potato virus Y (PVY) infection has been a global challenge for potato production and the leading cause of downgrading and rejection of seed crops for certification. Accurate and timely diagnosis is a key for effective disease control. Here, we have optimized a reverse transcription loop-mediated amplification (RT-LAMP) assay to differentiate the PVY O and N serotypes. The RT-LAMP assay is based on isothermal autocyclic strand displacement during DNA synthesis. The high specificity of this method relies heavily on the primer sets designed for the amplification of the targeted regions. We designed specific primer sets targeting a region within the coat protein gene that contains nucleotide signatures typical for O and N coat protein types, and these primers differ in their annealing temperature. Combining this assay with total RNA extraction by magnetic capture, we have established a highly sensitive, simplified and shortened RT-LAMP procedure as an alternative to conventional nucleic acid assays for diagnosis. This optimized procedure for virus detection may be used as a preliminary test for identifying the viral serotype prior to investing time and effort in multiplex RT-PCR tests when a specific strain is needed.

Real time magnetic field and flux measurements for tokamak control using a multi-core PCI Express system

International Nuclear Information System (INIS)

Giannone, L.; Schneider, W.; McCarthy, P.J.; Sips, A.C.C.; Treutterer, W.; Behler, K.; Eich, T.; Fuchs, J.C.; Hicks, N.; Kallenbach, A.; Maraschek, M.; Mlynek, A.; Neu, G.; Pautasso, G.; Raupp, G.; Reich, M.; Schuhbeck, K.H.; Stober, J.; Volpe, F.; Zehetbauer, T.

2009-01-01

The existing real time system for the position and shape control in ASDEX Upgrade has been extended to calculate magnetic flux surfaces in real time using a multi-core PCI Express system running LabVIEW RT. The availability of reflective memory for LabVIEW RT will allow this system to be connected to the control system and other diagnostics in a multi-platform real time network. The measured response of each magnetic probe to the individual poloidal field coil currents in the absence of plasma current is compared to the calculated value. Prior to a tokamak discharge this comparison can be used to check for failure of the magnetic probe, flux loop or integrator.

Experiment vs simulation RT WFNDEC 2014 benchmark: CIVA results

International Nuclear Information System (INIS)

Tisseur, D.; Costin, M.; Rattoni, B.; Vienne, C.; Vabre, A.; Cattiaux, G.; Sollier, T.

2015-01-01

The French Atomic Energy Commission and Alternative Energies (CEA) has developed for years the CIVA software dedicated to simulation of NDE techniques such as Radiographic Testing (RT). RT modelling is achieved in CIVA using combination of a determinist approach based on ray tracing for transmission beam simulation and a Monte Carlo model for the scattered beam computation. Furthermore, CIVA includes various detectors models, in particular common x-ray films and a photostimulable phosphor plates. This communication presents the results obtained with the configurations proposed in the World Federation of NDEC 2014 RT modelling benchmark with the RT models implemented in the CIVA software

Experiment vs simulation RT WFNDEC 2014 benchmark: CIVA results

Energy Technology Data Exchange (ETDEWEB)

Tisseur, D., E-mail: david.tisseur@cea.fr; Costin, M., E-mail: david.tisseur@cea.fr; Rattoni, B., E-mail: david.tisseur@cea.fr; Vienne, C., E-mail: david.tisseur@cea.fr; Vabre, A., E-mail: david.tisseur@cea.fr; Cattiaux, G., E-mail: david.tisseur@cea.fr [CEA LIST, CEA Saclay 91191 Gif sur Yvette Cedex (France); Sollier, T. [Institut de Radioprotection et de Sûreté Nucléaire, B.P.17 92262 Fontenay-Aux-Roses (France)

2015-03-31

The French Atomic Energy Commission and Alternative Energies (CEA) has developed for years the CIVA software dedicated to simulation of NDE techniques such as Radiographic Testing (RT). RT modelling is achieved in CIVA using combination of a determinist approach based on ray tracing for transmission beam simulation and a Monte Carlo model for the scattered beam computation. Furthermore, CIVA includes various detectors models, in particular common x-ray films and a photostimulable phosphor plates. This communication presents the results obtained with the configurations proposed in the World Federation of NDEC 2014 RT modelling benchmark with the RT models implemented in the CIVA software.

Use of NASA Near Real-Time and Archived Satellite Data to Support Disaster Assessment

Science.gov (United States)

McGrath, Kevin M.; Molthan, Andrew L.; Burks, Jason E.

2014-01-01

NASA's Short-term Prediction Research and Transition (SPoRT) Center partners with the NWS to provide near realtime data in support of a variety of weather applications, including disasters. SPoRT supports NASA's Applied Sciences Program: Disasters focus area by developing techniques that will aid the disaster monitoring, response, and assessment communities. SPoRT has explored a variety of techniques for utilizing archived and near real-time NASA satellite data. An increasing number of end-users - such as the NWS Damage Assessment Toolkit (DAT) - access geospatial data via a Web Mapping Service (WMS). SPoRT has begun developing open-standard Geographic Information Systems (GIS) data sets via WMS to respond to end-user needs.

Evaluation of Stream Mining Classifiers for Real-Time Clinical Decision Support System: A Case Study of Blood Glucose Prediction in Diabetes Therapy

Directory of Open Access Journals (Sweden)

Simon Fong

2013-01-01

Full Text Available Earlier on, a conceptual design on the real-time clinical decision support system (rt-CDSS with data stream mining was proposed and published. The new system is introduced that can analyze medical data streams and can make real-time prediction. This system is based on a stream mining algorithm called VFDT. The VFDT is extended with the capability of using pointers to allow the decision tree to remember the mapping relationship between leaf nodes and the history records. In this paper, which is a sequel to the rt-CDSS design, several popular machine learning algorithms are investigated for their suitability to be a candidate in the implementation of classifier at the rt-CDSS. A classifier essentially needs to accurately map the events inputted to the system into one of the several predefined classes of assessments, such that the rt-CDSS can follow up with the prescribed remedies being recommended to the clinicians. For a real-time system like rt-CDSS, the major technological challenges lie in the capability of the classifier to process, analyze and classify the dynamic input data, quickly and upmost reliably. An experimental comparison is conducted. This paper contributes to the insight of choosing and embedding a stream mining classifier into rt-CDSS with a case study of diabetes therapy.

Characterizing the utility of the TMPA real-time product for hydrologic predictions over global river basins across scales

Science.gov (United States)

Gao, H.; Zhang, S.; Nijssen, B.; Zhou, T.; Voisin, N.; Sheffield, J.; Lee, K.; Shukla, S.; Lettenmaier, D. P.

2017-12-01

Despite its errors and uncertainties, the Tropical Rainfall Measuring Mission (TRMM) Multi-satellite Precipitation Analysis real-time product (TMPA-RT) has been widely used for hydrological monitoring and forecasting due to its timely availability for real-time applications. To evaluate the utility of TMPA-RT in hydrologic predictions, many studies have compared modeled streamflows driven by TMPA-RT against gauge data. However, because of the limited availability of streamflow observations in data sparse regions, there is still a lack of comprehensive comparisons for TMPA-RT based hydrologic predictions at the global scale. Furthermore, it is expected that its skill is less optimal at the subbasin scale than the basin scale. In this study, we evaluate and characterize the utility of the TMPA-RT product over selected global river basins during the period of 1998 to 2015 using the TMPA research product (TMPA-RP) as a reference. The Variable Infiltration Capacity (VIC) model, which was calibrated and validated previously, is adopted to simulate streamflows driven by TMPA-RT and TMPA-RP, respectively. The objective of this study is to analyze the spatial and temporal characteristics of the hydrologic predictions by answering the following questions: (1) How do the precipitation errors associated with the TMPA-RT product transform into streamflow errors with respect to geographical and climatological characteristics? (2) How do streamflow errors vary across scales within a basin?

Using the SPoRT POES/GOES Hybrid Product in OCONUS Forecasting

Science.gov (United States)

Smith, Matt; Fuell, Kevin; Nelson, Jim

2014-01-01

The SPoRT (Short-term Prediction and Research Transition) Program at the NASA/Marshall Space Flight Center has been providing unique NASA and NOAA data and techniques to partner Weather Forecast Offices (WFOs) for ten years. Data are provided in the Decision Support System used by WFO forecasters: AWIPS. For the last couple of years, SPoRT has been producing the POES/GOES Hybrid. This suite of products combines the strength ofl5- minute animations of GOES imagery - providing temporal continuity, with the higher resolution, relatively random availability, of polar orbiting (POES) imagery data. The product was first introduced with only MODIS data from NASA's Terra and Aqua satellites, but recently the VIIRS instrument onboard the Suomi-NPP satellite was added, providing better high-resolution coverage. These products represent SPoRT's efforts to prepare for higher resolution, higher frequency GOES-R imagery - as well as helping to move VIIRS (JPSS) data into the mainstream of weather forecasting. SPoRT generates 5 products for this dataset: Visible, Longwave Infrared (11 micrometers), Shortwave IR (3.7 micrometers), Water Vapor (6.7 micrometers), and Fog (Difference of 11 micrometer and 3.7 micrometer channels). The Water Vapor hybrid product has a Red-Blue-Green image from MODIS inlaid, since it provides even more qualitative information than water vapor alone. Animated examples of the products will be shown in this presentation. While the resolution at nadir of GOES imagery is nominally Han (4km for IR channels), the inlaid polar orbiter imagery has a resolution of 250m (lkm for IR channels). This has tremendous application in the continental US. However, in high latitudes, since the usefulness of GOES degrades poleward rapidly, the contrast of GOES and POES data is stark. The consistent temporal nature of GOES, even though at a reduced resolution at high latitudes, provides basic situational awareness, but the introduction of polar data is very helpful in seeing

Transient analysis of a grid connected wind driven induction generator using a real-time simulation platform

Energy Technology Data Exchange (ETDEWEB)

Ouhrouche, Mohand [Department of Applied Sciences, University of Quebec at Chicoutimi, Quebec, G7H2B1 (Canada)

2009-03-15

Due to its simple construction, ruggedness and low cost, the induction generator driven by a wind turbine and feeding power to the grid appears to be an attractive solution to the problem of growing energy demand in the context of environmental issues. This paper investigates the integration of such a system into the main utility using RT-Lab trademark (Trademark of Opal-RT Technologies) software package running on a simple off-the-shelf PC. This real-time simulation platform is now adopted by many high-tech industries as a real-time laboratory package for rapid control prototyping and for Hardware-in-the-Loop applications. Real-time digital simulation results obtained during contingencies, such as islanding and unbalanced faults are presented and analysed. (author)

Transitioning NPOESS Data to Weather Offices: The SPoRT Paradigm with EOS Data

Science.gov (United States)

Jedlovec, Gary

2009-01-01

Real-time satellite information provides one of many data sources used by NWS weather forecast offices (WFOs) to diagnose current weather conditions and to assist in short-term forecast preparation. While GOES satellite data provides relatively coarse spatial resolution coverage of the continental U.S. on a 10-15 minute repeat cycle, polar orbiting imagery has the potential to provide snapshots of weather conditions at high-resolution in many spectral channels. Additionally, polar orbiting sounding data can provide additional information on the thermodynamic structure of the atmosphere in data sparse regions of at asynoptic observation times. The NASA Short-term Prediction Research and Transition (SPoRT) project has demonstrated the utility of polar orbiting MODIS and AIRS data on the Terra and Aqua satellites to improve weather diagnostics and short-term forecasting on the regional and local scales. SPoRT scientists work directly forecasters at selected WFOS in the Southern Region (SR) to help them ingest these unique data streams into their AWIPS system, understand how to use the data (through on-site and distance learn techniques), and demonstrate the utility of these products to address significant forecast problems. This process also prepares forecasters for the use of similar observational capabilities from NPOESS operational sensors. NPOESS environmental data records (EDRs) from the Visible 1 Infrared Imager I Radiometer Suite (VIIRS), the Cross-track Infrared Sounder (CrlS) and Advanced Technology Microwave Sounder (ATMS) instruments and additional value-added products produced by NESDIS will be available in near real-time and made available to WFOs to extend their use of NASA EOS data into the NPOESS era. These new data streams will be integrated into the NWs's new AWIPS II decision support tools. The AWIPS I1 system to be unveiled in WFOs in 2009 will be a JAVA-based decision support system which preserves the functionality of the existing systems and

Biomecánica del baile flamenco. Análisis de los tiempos de pausa y actividadØW

Directory of Open Access Journals (Sweden)

Alfonso Vargas Macías

2010-05-01

Full Text Available En este artículo se ha estudiado los períodos de actividad y descanso en el baile flamenco. Se han grabado y analizado los bailes de 6 bailaoras profesionales que voluntariamente han participado en este estudio con una edad media de 24 ±6,06 años, un peso medio de 58,84 ±2,25 kg y una altura media de 166 ± 6,67 cm. La duración media de los bailes es de 457,67 ± 70,77 s. Se ha contabilizado como tiempo de pausa aquellos segundos durante los que no se efectuaban ningún zapateado, estos períodos tienen una duración muy corta que oscila entre 1 y 15 s. La duración media de los tiempos totales de pausa durante los bailes ha sido de 32 ± 2,10 s, lo que equivale a un 6,99% del tiempo total de baile. Por el contrario, los períodos de actividad (segundos durante los que se efectúa al menos un zapateado son bastante más largos, de hecho un 26,29% del tiempo de baile se distribuye en períodos de una duración superior a 120 s. La duración media del tiempo total de actividad durante los bailes ha sido de 425,67 ± 41,3 s, equivalente a un 93,01% del tiempo total de baile. Los períodos de actividad superiores a 31 s suelen continuarse con períodos de pausa igual o mayores a 3 s. Pensamos que estos resultados son la base sobre la cual poder programar la preparación física específica de bailaoras de flamenco.

A Real-Time Open Access Platform Towards Proof of Concept for Smart Grid Applications

DEFF Research Database (Denmark)

Kemal, Mohammed Seifu; Petersen, Lennart; Iov, Florin

2018-01-01

: electrical grid layer, ICT & network emulation layer and control layer. DiSC-OPAL, a toolbox built for OPAL-RT real time grid simulation; comprising of models for wide variety of controllable flexible assets, stochastic power sources for wind and solar power plants, real consumption data’s and electrical...

Ajuste de tiempos de inmersión en técnicas combinadas de deshidratado de duraznos

Directory of Open Access Journals (Sweden)

Urfalino, D.P

2014-04-01

Full Text Available En el presente trabajo se desarrolló una técnica combinada de deshidratado osmótico-convectivo para duraznos. El objetivo fue ajustar los tiempos de inmersión en las soluciones de sacarosa empleadas para generar un proceso de fácil adopción y económico que brinde productos de alta calidad que mantengan dichas características durante todo su período de almacenaje. Para ello, se realizó una primera inmersión de los duraznos pelados en mitades en una solución de metabisulfito de sodio al 5% durante tres minutos y, posteriormente, se colocaron en una solución de sacarosa a 55º Brix variando los tiempos de inmersión (T1: 24 horas; T2: 12 horas; T3: 6 horas y T4: 0 horas. Transcurridos dichos intervalos de tiempo, los duraznos se escurrieron, se enjuagaron y se deshidrataron a 55º C hasta 20% de humedad final en un horno eléctrico. Cada tratamiento se realizó por duplicado. Durante la realización de los ensayos se determinó peso y volumen, antes y después de la etapa de deshidratado osmótico (DO y de la etapa de deshidratado convectivo. Una vez obtenido el producto final se evaluó color y dióxido de azufre residual cada tres meses por un plazo total de 10 meses. Los resultados reflejaron que los tratamientos que tuvieron mayores tiempos de inmersión en la solución hipertónica presentaron mayor volumen y rendimiento en el producto final, los cuales fueron directamente proporcionales al tiempo de inmersión. Por otro lado, los tratamientos que tuvieron la etapa de DO presentaron un contenido de sulfitos considerablemente menor en el producto final, respecto al testigo y una menor degradación del color a través del tiempo. El tratamiento 1 se destacó por presentar la mayor estabilidad del parámetro de color L* (el cual refleja la luminosidad durante los 10 meses de almacenaje evaluados.

Real-Time Implementation of Islanded Microgrid for Remote Areas

Directory of Open Access Journals (Sweden)

Monika Jain

2016-01-01

Full Text Available Islanding is a condition in which a microgrid or a portion of power grid, consisting of distributed generation (DG sources, converter, and load, gets disconnected from the utility grid. Under this condition the DG sources in a microgrid must switch to a voltage control mode, in order to provide constant voltage to local loads. In grid connected mode, the microgrid works as current controller and injects power to the main grid, depending on the power generation and local load with suitable market policies. Providing constant voltage at a stable frequency with proper synchronization amongst each DG in a microgrid is a challenge. The complexity of such grid requires careful study and analysis before actual implementation. These challenges of microgrid are addressed using real time OPAL-RT simulation technology. Thus the paper describes an islanded microgrid with master slave controller for power balance, voltage/frequency regulation, and synchronization. Based on an advanced real-time platform named Real-Time Laboratory (RT-LAB, the impacts of the micro sources, load, and converters in an islanded microgrid is studied in this paper. The effectiveness of the proposed controller is analyzed through experimental results under balanced/unbalanced nonlinear loads condition.

Enhancing the Quality of Service for Real Time Traffic over Optical Burst Switching (OBS Networks with Ensuring the Fairness for Other Traffics.

Directory of Open Access Journals (Sweden)

Mohammed A Al-Shargabi

Full Text Available Optical burst switching (OBS networks have been attracting much consideration as a promising approach to build the next generation optical Internet. A solution for enhancing the Quality of Service (QoS for high priority real time traffic over OBS with the fairness among the traffic types is absent in current OBS' QoS schemes. In this paper we present a novel Real Time Quality of Service with Fairness Ratio (RT-QoSFR scheme that can adapt the burst assembly parameters according to the traffic QoS needs in order to enhance the real time traffic QoS requirements and to ensure the fairness for other traffic. The results show that RT-QoSFR scheme is able to fulfill the real time traffic requirements (end to end delay, and loss rate ensuring the fairness for other traffics under various conditions such as the type of real time traffic and traffic load. RT-QoSFR can guarantee that the delay of the real time traffic packets does not exceed the maximum packets transfer delay value. Furthermore, it can reduce the real time traffic packets loss, at the same time guarantee the fairness for non real time traffic packets by determining the ratio of real time traffic inside the burst to be 50-60%, 30-40%, and 10-20% for high, normal, and low traffic loads respectively.

Tiempo para quedar en embarazo: Evaluación de su reproducibilidad en una cohorte retrospectiva

Directory of Open Access Journals (Sweden)

Diana Carolina Jaimes Vega

2015-04-01

Full Text Available Introducción: El tiempo para quedar en embarazo (TPE es una medida clínica de la fecundidad útil en la evaluación de efectos reproductivos relacionados con exposiciones ambientales u ocupacionales. Estudios con mujeres europeas evidencian que su uso tiene una adecuada recordación y reproducibilidad; sin embargo, estas propiedades no han sido evaluadas en Latinoamérica. Objetivos: Evaluar la reproducibilidad de la medida TPE en una población de mujeres colombianas como una aproximación clínica de la fecundidad. Metodología: Estudio de reproducibilidad prueba-reprueba de un cuestionario para determinar el tiempo al primer embarazo en una sub-muestra de 27 mujeres, anidado en una cohorte retrospectiva de evaluación de los efectos reproductivos de la exposición al mercurio metálico en la minería artesanal de oro. El cuestionario fue administrado de forma repetida por un evaluador entrenado, en el primer momento en una entrevista presencial y 12 meses después en una entrevista telefónica. La reproducibilidad del cuestionario fue evaluada usando el coeficiente de correlación intraclase (CCI. Resultados: La mediana de tiempo al embarazo fue de 4 meses (rango intercuartil 1-12. El rango de tiempo transcurrido desde el primer embarazo estuvo entre 1 y 15 años. El CCI (2,k fue 0.726 (IC 95% 0.39, 0.88, demostrando una buena reproducibilidad de la variable después de un año de separación entre la primera y segunda entrevista. Conclusiones: El TPE para el primer embarazo mostró ser una medida clínica de fecundidad sencilla y reproducible, con un tiempo de recordación de hasta 15 años y en evaluación presencial o telefónica en una población de mujeres colombianas.

Power lies in interdisciplinary cooperation / Kärt Summatavet ; interv. Kärt Blumberg

Index Scriptorium Estoniae

Summatavet, Kärt, 1963-

2008-01-01

Ehtekunstnik Kärt Summatavet oma uudsest meetodist ehete valmistamisel - paberil oleva kujutise ülekandmisest arvuti abil metallile, mille ta töötas väljas oma doktoritöö raames Soomes Helsingi Kunsti- ja Disainiülikoolis ning mis pälvis Soulis toimunud ülemaailmsel naisleiutajate konkursil hõbemedali

Evaluating the Impacts of NASA/SPoRT Daily Greenness Vegetation Fraction on Land Surface Model and Numerical Weather Forecasts

Science.gov (United States)

Bell, Jordan R.; Case, Jonathan L.; Molthan, Andrew L.

2011-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center develops new products and techniques that can be used in operational meteorology. The majority of these products are derived from NASA polar-orbiting satellite imagery from the Earth Observing System (EOS) platforms. One such product is a Greenness Vegetation Fraction (GVF) dataset, which is produced from Moderate Resolution Imaging Spectroradiometer (MODIS) data aboard the NASA EOS Aqua and Terra satellites. NASA SPoRT began generating daily real-time GVF composites at 1-km resolution over the Continental United States (CONUS) on 1 June 2010. The purpose of this study is to compare the National Centers for Environmental Prediction (NCEP) climatology GVF product (currently used in operational weather models) to the SPoRT-MODIS GVF during June to October 2010. The NASA Land Information System (LIS) was employed to study the impacts of the new SPoRT-MODIS GVF dataset on land surface models apart from a full numerical weather prediction (NWP) model. For the 2010 warm season, the SPoRT GVF in the western portion of the CONUS was generally higher than the NCEP climatology. The eastern CONUS GVF had variations both above and below the climatology during the period of study. These variations in GVF led to direct impacts on the rates of heating and evaporation from the land surface. The second phase of the project is to examine the impacts of the SPoRT GVF dataset on NWP using the Weather Research and Forecasting (WRF) model. Two separate WRF model simulations were made for individual severe weather case days using the NCEP GVF (control) and SPoRT GVF (experimental), with all other model parameters remaining the same. Based on the sensitivity results in these case studies, regions with higher GVF in the SPoRT model runs had higher evapotranspiration and lower direct surface heating, which typically resulted in lower (higher) predicted 2-m temperatures (2-m dewpoint temperatures). The opposite was true

Performance of a RT-PCR Assay in Comparison to FISH and Immunohistochemistry for the Detection of ALK in Non-Small Cell Lung Cancer.

Science.gov (United States)

Hout, David R; Schweitzer, Brock L; Lawrence, Kasey; Morris, Stephan W; Tucker, Tracy; Mazzola, Rosetta; Skelton, Rachel; McMahon, Frank; Handshoe, John; Lesperance, Mary; Karsan, Aly; Saltman, David L

2017-08-01

Patients with lung cancers harboring an activating anaplastic lymphoma kinase ( ALK ) rearrangement respond favorably to ALK inhibitor therapy. Fluorescence in situ hybridization (FISH) and immunohistochemistry (IHC) are validated and widely used screening tests for ALK rearrangements but both methods have limitations. The ALK RGQ RT-PCR Kit (RT-PCR) is a single tube quantitative real-time PCR assay for high throughput and automated interpretation of ALK expression. In this study, we performed a direct comparison of formalin-fixed paraffin-embedded (FFPE) lung cancer specimens using all three ALK detection methods. The RT-PCR test (diagnostic cut-off Δ C t of ≤8) was shown to be highly sensitive (100%) when compared to FISH and IHC. Sequencing of RNA detected full-length ALK transcripts or EML4-ALK and KIF5B-ALK fusion variants in discordant cases in which ALK expression was detected by the ALK RT-PCR test but negative by FISH and IHC. The overall specificity of the RT-PCR test for the detection of ALK in cases without full-length ALK expression was 94% in comparison to FISH and sequencing. These data support the ALK RT-PCR test as a highly efficient and reliable diagnostic screening approach to identify patients with non-small cell lung cancer whose tumors are driven by oncogenic ALK.

Aportes y tiempos del texto (de teatro

Directory of Open Access Journals (Sweden)

Jean-Frédéric Chevallier

2018-01-01

Full Text Available Volviendo a visitar, a la luz de las prácticas escénicas contemporáneas, la relación entre texto y teatro, se propone, para entender los matices de dicha relación, hablar de texto-pregunta, texto débil, texto fuerte, texto saturado e, in fine, texto-propuesta. El surgimiento de este último, el texto-propuesta, producido por el espectador, invita a pensar que si bien se ha hablado mucho del “devenir-escénico” de un texto literario, quizás haya llegado el tiempo de enfocar el “devenir-literatura” de un acto teatral.

La vida y la flecha del tiempo

Directory of Open Access Journals (Sweden)

Jaksel Nájera Mota

2014-01-01

Full Text Available La vida y la flecha del tiempo se fundamentan en una interrelación entre orden-desorden, muerte-vida, acumulación-pérdida que permite transformaciones y disipaciones en la estructura orgánica. Por lo anterior, se analizan algunos procesos metabólicos y de regeneración celular. Se demuestra que a pesar de los esfuerzos por retrasar el desgaste del organismo, la vida se mantiene dirigida a la degradación; sin embargo, es posible minimizar algunos problemas causados por el envejecimiento manteniendo una vida más saludable, con ejercicio y buena alimentación.

El tiempo en la vida humana. Disfrutar la vida.

OpenAIRE

Fernández-Crehuet, José María

2016-01-01

La conciliación de la vida profesional, familiar y personal es una tarea que estará presente durante toda nuestra vida y no siempre será sencilla. En la medida en que descubramos el sentido de nuestra vida, identificando nuestra misión, el camino que hemos de recorrer y la meta a alcanzar, podremos priorizar e integrar los distintos roles que tenemos que ejercer disfrutando del tiempo de nuestra vida.

Lineage-Specific Real-Time RT-PCR for Yellow Fever Virus Outbreak Surveillance, Brazil.

Science.gov (United States)

Fischer, Carlo; Torres, Maria C; Patel, Pranav; Moreira-Soto, Andres; Gould, Ernest A; Charrel, Rémi N; de Lamballerie, Xavier; Nogueira, Rita Maria Ribeiro; Sequeira, Patricia C; Rodrigues, Cintia D S; Kümmerer, Beate M; Drosten, Christian; Landt, Olfert; Bispo de Filippis, Ana Maria; Drexler, Jan Felix

2017-11-01

The current yellow fever outbreak in Brazil prompted widespread yellow fever virus (YFV) vaccination campaigns, imposing a responsibility to distinguish between vaccine- and wild-type YFV-associated disease. We developed novel multiplex real-time reverse transcription PCRs that differentiate between vaccine and American wild-type YFV. We validated these highly specific and sensitive assays in an outbreak setting.

Lineage-Specific Real-Time RT-PCR for Yellow Fever Virus Outbreak Surveillance, Brazil

OpenAIRE

Fischer, Carlo; Torres, Maria C.; Patel, Pranav; Moreira-Soto, Andres; Gould, Ernest A.; Charrel, Rémi N.; de Lamballerie, Xavier; Nogueira, Rita Maria Ribeiro; Sequeira, Patricia C.; Rodrigues, Cintia D.S.; Kümmerer, Beate M.; Drosten, Christian; Landt, Olfert; Bispo de Filippis, Ana Maria; Drexler, Jan Felix

2017-01-01

The current yellow fever outbreak in Brazil prompted widespread yellow fever virus (YFV) vaccination campaigns, imposing a responsibility to distinguish between vaccine- and wild-type YFV-associated disease. We developed novel multiplex real-time reverse transcription PCRs that differentiate between vaccine and American wild-type YFV. We validated these highly specific and sensitive assays in an outbreak setting.

Incremental Activation Detection for Real-Time fMRI Series Using Robust Kalman Filter

Directory of Open Access Journals (Sweden)

Liang Li

2014-01-01

Full Text Available Real-time functional magnetic resonance imaging (rt-fMRI is a technique that enables us to observe human brain activations in real time. However, some unexpected noises that emerged in fMRI data collecting, such as acute swallowing, head moving and human manipulations, will cause much confusion and unrobustness for the activation analysis. In this paper, a new activation detection method for rt-fMRI data is proposed based on robust Kalman filter. The idea is to add a variation to the extended kalman filter to handle the additional sparse measurement noise and a sparse noise term to the measurement update step. Hence, the robust Kalman filter is designed to improve the robustness for the outliers and can be computed separately for each voxel. The algorithm can compute activation maps on each scan within a repetition time, which meets the requirement for real-time analysis. Experimental results show that this new algorithm can bring out high performance in robustness and in real-time activation detection.

Tiempo y situacionalidad. La “respuesta” merleaupontiana a la paradoja de McTaggart

Directory of Open Access Journals (Sweden)

Claudio Cormick

2014-01-01

Full Text Available Se busca establecer una relación, no satisfactoriamente explorada, entre la fenomenología merleaupontiana del tiempo y un problema central de la “theory of time” analítica, la paradoja de McTaggart. Al clarificar, en polémica con Priest (1998, el auténtico sentido del “subjetivismo” merleaupontiano con respecto al tiempo, se señala cómo establecer una confluencia entre el acercamiento fenomenológico y las tesis desarrolladas por Michael Dummett como respuesta a la mencionada paradoja. Con los señalamientos de Dummett y la interpretación de Bimbenet acerca del “perspectivismo” merleaupontiano, se intenta una solución “situacional” a la paradoja.

Rapid detection of Van genes in rectal swabs by real time PCR in Southern Brazil

Directory of Open Access Journals (Sweden)

Vlademir Cantarelli

2011-10-01

Full Text Available INTRODUCTION: Laboratory-based surveillance is an important component in the control of vancomycin resistant enterococci (VRE. METHODS: The study aimed to evaluate real-time polymerase chain reaction (RT-PCR (genes vanA-vanB for VRE detection on 115 swabs from patients included in a surveillance program. RESULTS: Sensitivity of RT-PCR was similar to primary culture (75% and 79.5%, respectively when compared to broth enriched culture, whereas specificity was 83.1%. CONCLUSIONS: RT-PCR provides same day results, however it showed low sensitivity for VRE detection.

Breath-hold technique in conventional APPA or intensity-modulated radiotherapy for Hodgkin's lymphoma. Comparison of ILROG IS-RT and the GHSG IF-RT

Energy Technology Data Exchange (ETDEWEB)

Kriz, Jan; Spickermann, Max; Lehrich, Philipp; Reinartz, Gabriele; Eich, Hans; Haverkamp, Uwe [University of Muenster, Department of Radiation Oncology, Muenster (Germany); Schmidberger, Heinz [University Mainz, Department of Radiation Oncology, Mainz (Germany)

2015-09-15

The present study addresses the role of intensity-modulated radiotherapy (IMRT) in contrast to standard RT (APPA) for patients with Hodgkin's lymphoma (HL) with a focus on deep inspiration breath-hold (DIBH) technique and a comparison between the International Lymphoma Radiation Oncology Group (ILROG) Involved Site Radiotherapy (IS-RT) versus the German Hodgkin Study Group (GHSG) Involved Field Radiotherapy (IF-RT). APPA treatment and 2 IMRT plans were compared for 11 patients with HL. Furthermore, treatment with DIBH versus free breathing (FB) and two different treatment volumes, i.e. IF-RT versus IS-RT, were compared. IMRT was planned as a sliding-window technique with 5 and 7 beam angles. For each patient 12 different treatment plans were calculated (132 plans). Following organs at risk (OAR) were analysed: lung, heart, spinal cord, oesophagus, female breast and skin. Comparisons of the different values with regard to dose-volume histograms (DVH), conformity and homogeneity indices were made. IS-RT reduces treatment volumes. With respect to the planning target volume (PTV), IMRT achieves better conformity but the same homogeneity. Regarding the D{sub mean} for the lung, IMRT shows increased doses, while RT in DIBH reduces doses. The IMRT shows improved values for D{sub max} concerning the spinal cord, whereas the APPA shows an improved D{sub mean} of the lung and the female breast. IS-RT reduces treatment volumes. Intensity-modulated radiotherapy shows advantages in the conformity. Treatment in DIBH also reduces the dose applied to the lungs and the heart. (orig.) [German] Ziel dieser Auswertung ist es, die konventionelle APPA-Feldanordnung mit der Intensitaetsmodulierten Radiotherapie (IMRT) bei Patienten mit Hodgkin-Lymphom (HL) zu vergleichen. Ein besonderer Fokus liegt hierbei auf der Bestrahlung in tiefer Inspiration und Atemanhaltetechnik (DIBH). Des Weiteren wurde die ''Involved-site''-Radiotherapie (IS-RT) der International

RT-PCR Protocols - Methods in Molecular Biology

Directory of Open Access Journals (Sweden)

Manuela Monti

2011-03-01

Full Text Available “The first record I have of it, is when I made a computer file which I usually did whenever I had an idea, that would have been on the Monday when I got back, and I called it Chain Reaction.POL, meaning polymerase. That was the identifier for it and later I called the thing the Polymerase Chain Reaction, which a lot of people thought was a dumb name for it, but it stuck, and it became PCR”. With these words the Nobel prize winner, Kary Mullis, explains how he named the PCR: one of the most important techniques ever invented and currently used in molecular biology. This book “RT-PCR Protocols” covers a wide range of aspects important for the setting of a PCR experiment for both beginners and advanced users. In my opinion the book is very well structured in three different sections. The first one describes the different technologies now available, like competitive RT-PCR, nested RT-PCR or RT-PCR for cloning. An important part regards the usage of PCR in single cell mouse embryos, stressing how important...........

AWIPS II Application Development, a SPoRT Perspective

Science.gov (United States)

Burks, Jason E.; Smith, Matthew; McGrath, Kevin M.

2014-01-01

The National Weather Service (NWS) is deploying its next-generation decision support system, called AWIPS II (Advanced Weather Interactive Processing System II). NASA's Short-term Prediction Research and Transition (SPoRT) Center has developed several software 'plug-ins' to extend the capabilities of AWIPS II. SPoRT aims to continue its mission of improving short-term forecasts by providing NASA and NOAA products on the decision support system used at NWS weather forecast offices (WFOs). These products are not included in the standard Satellite Broadcast Network feed provided to WFOs. SPoRT has had success in providing support to WFOs as they have transitioned to AWIPS II. Specific examples of transitioning SPoRT plug-ins to WFOs with newly deployed AWIPS II systems will be presented. Proving Ground activities (GOES-R and JPSS) will dominate SPoRT's future AWIPS II activities, including tool development as well as enhancements to existing products. In early 2012 SPoRT initiated the Experimental Product Development Team, a group of AWIPS II developers from several institutions supporting NWS forecasters with innovative products. The results of the team's spring and fall 2013 meeting will be presented. Since AWIPS II developers now include employees at WFOs, as well as many other institutions related to weather forecasting, the NWS has dealt with a multitude of software governance issues related to the difficulties of multiple remotely collaborating software developers. This presentation will provide additional examples of Research-to-Operations plugins, as well as an update on how governance issues are being handled in the AWIPS II developer community.

RT/OS - realtime programming and application environment for the COSY control system

International Nuclear Information System (INIS)

Weinert, A.; Hacker, U.; Haberbosch, Ch.; Henn, K.; Simon, M.

1994-01-01

This paper presents the highlights and constraints of RT/OS and how it can be used at other places. The support of approximately 1000 VME and VXI CPUs in network-based multiprocessor systems needs a special set of programming tools and application environment which are bundled as the RT/OS Real-Time-Operating-System. Supporting the Motorola 680x0 processors and micro-controller with a development system on UNIX and MS-DOS platforms, the tool set gives the opportunity of bringing small embedded controllers as well as VME multiprocessor systems into operation. The tool set includes a cross compiler and a special version of a remote debugger, as well as application support such as downloading and configuration management. The main feature is a modular kernel with message-based task switching, using the rendezvous principle to allow easy extension. Special features of this kernel for a distributed system are networking with the Berkeley socket library supporting TCP/IP, XNS and Novell Netware, a multiprocessor system on VMEbus with the interprocessor Communication Module (IPC), a device driver library for almost every G64 I/O card using a FieldBus Interface called PDV and a X11R4 port. ((orig.))

RT/OS - realtime programming and application environment for the COSY control system

Energy Technology Data Exchange (ETDEWEB)

Weinert, A [Forschungszentrum, Juelich, Postfach 1913, 52425 Juelich (Germany); Hacker, U [Forschungszentrum, Juelich, Postfach 1913, 52425 Juelich (Germany); Haberbosch, Ch [Forschungszentrum, Juelich, Postfach 1913, 52425 Juelich (Germany); Henn, K [Forschungszentrum, Juelich, Postfach 1913, 52425 Juelich (Germany); Simon, M [Forschungszentrum, Juelich, Postfach 1913, 52425 Juelich (Germany)

1994-12-15

This paper presents the highlights and constraints of RT/OS and how it can be used at other places. The support of approximately 1000 VME and VXI CPUs in network-based multiprocessor systems needs a special set of programming tools and application environment which are bundled as the RT/OS Real-Time-Operating-System. Supporting the Motorola 680x0 processors and micro-controller with a development system on UNIX and MS-DOS platforms, the tool set gives the opportunity of bringing small embedded controllers as well as VME multiprocessor systems into operation. The tool set includes a cross compiler and a special version of a remote debugger, as well as application support such as downloading and configuration management. The main feature is a modular kernel with message-based task switching, using the rendezvous principle to allow easy extension. Special features of this kernel for a distributed system are networking with the Berkeley socket library supporting TCP/IP, XNS and Novell Netware, a multiprocessor system on VMEbus with the interprocessor Communication Module (IPC), a device driver library for almost every G64 I/O card using a FieldBus Interface called PDV and a X11R4 port. ((orig.))

Environmental Regulation of Plant Gene Expression: An Rt-qPCR Laboratory Project for an Upper-Level Undergraduate Biochemistry or Molecular Biology Course

Science.gov (United States)

Eickelberg, Garrett J.; Fisher, Alison J.

2013-01-01

We present a novel laboratory project employing "real-time" RT-qPCR to measure the effect of environment on the expression of the "FLOWERING LOCUS C" gene, a key regulator of floral timing in "Arabidopsis thaliana" plants. The project requires four 3-hr laboratory sessions and is aimed at upper-level undergraduate…

Edad, aprendizaje, tiempo quirúrgico y complicaciones en la cirugía videolaparoscópica

Directory of Open Access Journals (Sweden)

Luis Miguel Pita Armenteros

1999-12-01

Full Text Available El tiempo quirúrgico es un factor de riesgo menos importante en las operaciones electivas, mucho menos si existe gentileza quirúrgica y control anestésico. El método videolaparoscópico exige de mayor monitoreo en la anestesia y es de mínimo traumatismo. Sin embargo, se habla de tiempos quirúrgicos muy elevados en la fase de aprendizaje como limitante en la productividad quirúrgica con aumento del costo quirófano y de complicaciones, en particular en cirujanos mayores. Este trabajo desmitifica edad, aprendizaje, tiempo quirúrgico y complicaciones en la cirugía videolaparoscópica. La prudencia influye en el tiempo quirúrgico, pero disminuye conversión y complicaciones. Obtener la calificación básica en cirugía videolaparoscópica requiere de 40 a 50 operacionesSurgical time is not very significant risk factor in elective surgery. It is much less important when there is an adequate surgical management and anesthetic control. The videolaparoscopic method demands a greater anesthetic monitoring and produces minimun traumatism. However, reference is made to extremely elevated surgical times during training that limit surgical productivity and increase the cost of the operation and the number of complications particularly among major surgeons. This paper considers age, training, surgical time and complications in videolaparoscopic surgery. Prudence influences on the surgical time but reduces conversion and complications. To obtain the basic qualification in videolaparoscopic surgery, it is necessary to perform 40 or 50 operations

Development of a duplex real-time RT-qPCR assay to monitor genome replication, gene expression and gene insert stability during in vivo replication of a prototype live attenuated canine distemper virus vector encoding SIV gag.

Science.gov (United States)

Coleman, John W; Wright, Kevin J; Wallace, Olivia L; Sharma, Palka; Arendt, Heather; Martinez, Jennifer; DeStefano, Joanne; Zamb, Timothy P; Zhang, Xinsheng; Parks, Christopher L

2015-03-01

Advancement of new vaccines based on live viral vectors requires sensitive assays to analyze in vivo replication, gene expression and genetic stability. In this study, attenuated canine distemper virus (CDV) was used as a vaccine delivery vector and duplex 2-step quantitative real-time RT-PCR (RT-qPCR) assays specific for genomic RNA (gRNA) or mRNA have been developed that concurrently quantify coding sequences for the CDV nucleocapsid protein (N) and a foreign vaccine antigen (SIV Gag). These amplicons, which had detection limits of about 10 copies per PCR reaction, were used to show that abdominal cavity lymphoid tissues were a primary site of CDV vector replication in infected ferrets, and importantly, CDV gRNA or mRNA was undetectable in brain tissue. In addition, the gRNA duplex assay was adapted for monitoring foreign gene insert genetic stability during in vivo replication by analyzing the ratio of CDV N and SIV gag genomic RNA copies over the course of vector infection. This measurement was found to be a sensitive probe for assessing the in vivo genetic stability of the foreign gene insert. Copyright © 2014 Elsevier B.V. All rights reserved.

Ideología y matemáticas: Equilibrio y tiempo

Directory of Open Access Journals (Sweden)

Llorente Marrón, Mª del Mar

2001-01-01

Full Text Available En esta comunicación se recogen distintas definiciones del concepto de equilibrio económico, y las opiniones de distintos autores partidarios de que el concepto de equilibrio se defina en un contexto dinámico. De otro modo no tendría sentido caracterizar el equilibrio como un estado de reposo, ya que todo cambio, movimiento o fluctuación ocurre en el tiempo. Posteriormente, se estudian distintas propuestas para formular modelos económicos dinámicos. Se defiende la necesidad de un análisis en profundidad, para el cual la Matemática proporciona un instrumento imprescindible: las funciones compuestas. En este análisis el elemento tiempo debe aparecer, de forma explícita, como única variable exógena, esto es, como soporte y causa última de cualquier cambio o evolución. Este planteamiento implica la revisión de hipótesis y supuestos generalmente admitidos en el Análisis Económico estático. Respecto a la docencia de las Matemáticas, será preciso introducir en nuestro programas aspectos que permitan estudiar unas Matemáticas para el Desequilibrio Económico.

Subtyping of swine influenza viruses using a high-throughput real time PCR platform

DEFF Research Database (Denmark)

Goecke, Nicole Bakkegård; Krog, Jesper Schak; Hjulsager, Charlotte Kristiane

). The results revealed that the performance of the dynamic chip was similar to conventional real time analysis. Discussion and conclusion. Application of the chip for subtyping of swine influenza has resulted in a significant reduction in time, cost and working hours. Thereby, it is possible to offer diagnostic...... test and subsequent subtyping is performed by real time RT-PCR (RT-qPCR) but several assays are needed to cover the wide range of circulating subtypes which is expensive,resource and time demanding. To mitigate these restrictions the high-throughput qPCR platform BioMark (Fluidigm) has been explored...... services with reduced price and turnover time which will facilitate choice of vaccines and by that lead to reduction of antibiotic used....

Development of a pan-Simbu real-time reverse transcriptase PCR for the detection of Simbu serogroup viruses and comparison with SBV diagnostic PCR systems.

Science.gov (United States)

Fischer, Melina; Schirrmeier, Horst; Wernike, Kerstin; Wegelt, Anne; Beer, Martin; Hoffmann, Bernd

2013-11-05

Schmallenberg virus (SBV), a novel orthobunyavirus of the Simbu serogroup, was first identified in October 2011 in dairy cattle in Germany, where it caused fever, diarrhea and a drop in milk yield. Since then, SBV additionally has been detected in adult sheep and goats. Although symptoms of acute infection were not observed, infection during a vulnerable phase of pregnancy caused congenital malformations and stillbirths. In view of the current situation and the possible emergence of further Simbu serogroup members, a pan-Simbu real-time reverse transcriptase (RT) PCR system for the reliable detection of Simbu serogroup viruses should be developed. In this study a pan-Simbu real-time RT-PCR system was established and compared to several SBV real-time RT-PCR assays. All PCR-systems were tested using a panel of different Simbu serogroup viruses as well as several field samples from diseased cattle, sheep and goats originating from all over Germany. Several pan-Simbu real-time RT-PCR products were sequenced via Sanger sequencing. Furthermore, in silico analyses were performed to investigate suitability for the detection of further orthobunyaviruses. All tested members of the Simbu serogroup (n = 14) as well as most of the field samples were successfully detected by the pan-Simbu real-time RT-PCR system. The comparison of this intercalating dye assay with different TaqMan probe-based assays developed for SBV diagnostics confirmed the functionality of the pan-Simbu assay for screening purposes. However, the SBV-TaqMan-assay SBV-S3 delivered the highest analytical sensitivity of less than ten copies per reaction for duplex systems including an internal control. In addition, for confirmation of SBV-genome detection the highly specific SBV-M1 assay was established. The pan-Simbu real-time RT-PCR system was able to detect all tested members of the Simbu serogroup, most of the SBV field samples as well as three tested Bunyamwera serogroup viruses with a suitable

Real-time three dimensional transesophageal echocardiography: technical aspects and clinical applications

Directory of Open Access Journals (Sweden)

Sergio Mondillo

2010-02-01

Full Text Available Real-time three-dimensional transeso-phageal echocardiography (RT3DTEE is now commonly used in daily clinical practice. The transesophageal, compared to the transthoracic approach, allows the visualization of the whole spectrum of the mitral valve apparatus and the posterior cardiac structures. Moreover, images obtained by RT 3D TEE provide a unique and complete visualization of the mitral valve prosthetic elements. Indeed, the possibility to visualize guidewires and catheters in cardiac chambers and their relationship with cardiac structures during percutaneous transcatheter procedures reduces the time of radiation exposure and simplifies the approach becoming the reference method for monitoring. This review aims to underline the potential clinical applications and the advantages of RT3DTEE compared to other methods.

Tiempo libre de enfermedad en infecciones urinarias recurrentes según profilaxis con antibiótico o con vacuna bacteriana

OpenAIRE

Santo Bueno, Pedro José

2014-01-01

[ES]Estudio comparativo de dos tipos de tratamientos profilacticos, antibioterapia supresiva y vacuna bacteriana, en infecciones urinarias de repetición, para determinar el tiempo libre de enfermedad, entendida como el tiempo transcurrido entre la finalización de la profilaxis y la aparición de un episodio de infeccion urinario.

Gestión del tiempo y procrastinación en la educación superior

OpenAIRE

Garzón Umerenkova, Angélica; Universidad El Bosque; Gil Flores, Javier; Universidad de Sevilla (Espala)

2017-01-01

La procrastinación constituye un fallo de las conductas autorregulatorias que conlleva efectos negativos a nivel académico. Analizamos el valor de la gestión del tiempo como variable predictora de la procrastinación, estudiando una muestra de 494 estudiantes universitarios colombianos de primer año, que fueron clasificados en dos grupos en función de su grado de procrastinación académica. Hemos recogido información sobre sus conductas de gestión del tiempo, medidas a través de una versión es...

EL SECUESTRO DE LAS HISTORIAS INDÍGENAS: ITENERARIO Y LIMITACIONES DEL TIEMPO LINEAL EN CHILE

OpenAIRE

MAXIMILIANO SALINAS CAMPOS

2015-01-01

La historia de Chile está cruzada por el conflicto entre la cultura moderna europea y las culturas indígenas. El tiempo lineal impuesto por el Estado nacional ha dejado al descubierto su irresponsabilidad con el tiempo indígena de los Andes. Esta temporalidad expresa una profunda y sustentable «ontología arcaica». Tras el fin de la Guerra Fría, y la postdictadura de Pinochet, esta propuesta se vuelve acuciante con las demandas políticas y los desafíos epistémicos indígenas del siglo XXI. En...

EL SECUESTRO DE LAS HISTORIAS INDÍGENAS: ITINERARIO Y LIMITACIONES DEL TIEMPO LINEAL EN CHILE

OpenAIRE

Salinas Campos, Maximiliano

2015-01-01

La historia de Chile está cruzada por el conflicto entre la cultura moderna europea y las culturas indígenas. El tiempo lineal impuesto por el Estado nacional ha dejado al descubierto su irresponsabilidad con el tiempo indígena de los Andes. Esta temporalidad expresa una profunda y sustentable «ontología arcaica». Tras el fin de la Guerra Fría, y la postdictadura de Pinochet, esta propuesta se vuelve acuciante con las demandas políticas y los desafíos epistémicos indígenas del siglo XXI. En e...

TIEMPO E HISTORIA EN LA FENOMENOLOGÍA DEL ESPÍRITU DE HEGEL

Directory of Open Access Journals (Sweden)

LUIS MARIANO DE LA MAZA

2007-01-01

Full Text Available Resumen: En este artículo se presenta una interpretación de las tesis fundamentales de Hegel en la Fenomenología del Espíritu acerca de la relación entre tiempo, historia y filosofía especulativa o ciencia. Para Hegel la formación de la conciencia individual hacia la ciencia se conecta con la historia universal, y el concepto de la historia es inseparable del concepto del espíritu. Se distinguen los distintos sentidos del tiempo en la Fenomenología, para centrar la atención principalmente en uno de ellos, que corresponde a la organización fenomenológico-conceptual de la historia. Finalmente, se ofrece una reflexión sobre la cuestión más general de la relación entre filosofía y temporalidad desde una perspectiva actual.

Riems influenza a typing array (RITA): An RT-qPCR-based low density array for subtyping avian and mammalian influenza a viruses.

Science.gov (United States)

Hoffmann, Bernd; Hoffmann, Donata; Henritzi, Dinah; Beer, Martin; Harder, Timm C

2016-06-03

Rapid and sensitive diagnostic approaches are of the utmost importance for the detection of humans and animals infected by specific influenza virus subtype(s). Cascade-like diagnostics starting with the use of pan-influenza assays and subsequent subtyping devices are normally used. Here, we demonstrated a novel low density array combining 32 TaqMan(®) real-time RT-PCR systems in parallel for the specific detection of the haemagglutinin (HA) and neuraminidase (NA) subtypes of avian and porcine hosts. The sensitivity of the newly developed system was compared with that of the pan-influenza assay, and the specificity of all RT-qPCRs was examined using a broad panel of 404 different influenza A virus isolates representing 45 different subtypes. Furthermore, we analysed the performance of the RT-qPCR assays with diagnostic samples obtained from wild birds and swine. Due to the open format of the array, adaptations to detect newly emerging influenza A virus strains can easily be integrated. The RITA array represents a competitive, fast and sensitive subtyping tool that requires neither new machinery nor additional training of staff in a lab where RT-qPCR is already established.

Projected Applications of a ``Climate in a Box'' Computing System at the NASA Short-term Prediction Research and Transition (SPoRT) Center

Science.gov (United States)

Jedlovec, G.; Molthan, A.; Zavodsky, B.; Case, J.; Lafontaine, F.

2010-12-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center focuses on the transition of unique observations and research capabilities to the operational weather community, with a goal of improving short-term forecasts on a regional scale. Advances in research computing have lead to “Climate in a Box” systems, with hardware configurations capable of producing high resolution, near real-time weather forecasts, but with footprints, power, and cooling requirements that are comparable to desktop systems. The SPoRT Center has developed several capabilities for incorporating unique NASA research capabilities and observations with real-time weather forecasts. Planned utilization includes the development of a fully-cycled data assimilation system used to drive 36-48 hour forecasts produced by the NASA Unified version of the Weather Research and Forecasting (WRF) model (NU-WRF). The horsepower provided by the “Climate in a Box” system is expected to facilitate the assimilation of vertical profiles of temperature and moisture provided by the Atmospheric Infrared Sounder (AIRS) aboard the NASA Aqua satellite. In addition, the Moderate Resolution Imaging Spectroradiometer (MODIS) instruments aboard NASA’s Aqua and Terra satellites provide high-resolution sea surface temperatures and vegetation characteristics. The development of MODIS normalized difference vegetation index (NVDI) composites for use within the NASA Land Information System (LIS) will assist in the characterization of vegetation, and subsequently the surface albedo and processes related to soil moisture. Through application of satellite simulators, NASA satellite instruments can be used to examine forecast model errors in cloud cover and other characteristics. Through the aforementioned application of the “Climate in a Box” system and NU-WRF capabilities, an end goal is the establishment of a real-time forecast system that fully integrates modeling and analysis capabilities developed

Projected Applications of a "Climate in a Box" Computing System at the NASA Short-Term Prediction Research and Transition (SPoRT) Center

Science.gov (United States)

Jedlovec, Gary J.; Molthan, Andrew L.; Zavodsky, Bradley; Case, Jonathan L.; LaFontaine, Frank J.

2010-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center focuses on the transition of unique observations and research capabilities to the operational weather community, with a goal of improving short-term forecasts on a regional scale. Advances in research computing have lead to "Climate in a Box" systems, with hardware configurations capable of producing high resolution, near real-time weather forecasts, but with footprints, power, and cooling requirements that are comparable to desktop systems. The SPoRT Center has developed several capabilities for incorporating unique NASA research capabilities and observations with real-time weather forecasts. Planned utilization includes the development of a fully-cycled data assimilation system used to drive 36-48 hour forecasts produced by the NASA Unified version of the Weather Research and Forecasting (WRF) model (NU-WRF). The horsepower provided by the "Climate in a Box" system is expected to facilitate the assimilation of vertical profiles of temperature and moisture provided by the Atmospheric Infrared Sounder (AIRS) aboard the NASA Aqua satellite. In addition, the Moderate Resolution Imaging Spectroradiometer (MODIS) instruments aboard NASA s Aqua and Terra satellites provide high-resolution sea surface temperatures and vegetation characteristics. The development of MODIS normalized difference vegetation index (NVDI) composites for use within the NASA Land Information System (LIS) will assist in the characterization of vegetation, and subsequently the surface albedo and processes related to soil moisture. Through application of satellite simulators, NASA satellite instruments can be used to examine forecast model errors in cloud cover and other characteristics. Through the aforementioned application of the "Climate in a Box" system and NU-WRF capabilities, an end goal is the establishment of a real-time forecast system that fully integrates modeling and analysis capabilities developed within the NASA SPoRT

Reference gene identification for reliable normalisation of quantitative RT-PCR data in Setaria viridis.

Science.gov (United States)

Nguyen, Duc Quan; Eamens, Andrew L; Grof, Christopher P L

2018-01-01

Quantitative real-time polymerase chain reaction (RT-qPCR) is the key platform for the quantitative analysis of gene expression in a wide range of experimental systems and conditions. However, the accuracy and reproducibility of gene expression quantification via RT-qPCR is entirely dependent on the identification of reliable reference genes for data normalisation. Green foxtail ( Setaria viridis ) has recently been proposed as a potential experimental model for the study of C 4 photosynthesis and is closely related to many economically important crop species of the Panicoideae subfamily of grasses, including Zea mays (maize), Sorghum bicolor (sorghum) and Sacchurum officinarum (sugarcane). Setaria viridis (Accession 10) possesses a number of key traits as an experimental model, namely; (i) a small sized, sequenced and well annotated genome; (ii) short stature and generation time; (iii) prolific seed production, and; (iv) is amendable to Agrobacterium tumefaciens -mediated transformation. There is currently however, a lack of reference gene expression information for Setaria viridis ( S. viridis ). We therefore aimed to identify a cohort of suitable S. viridis reference genes for accurate and reliable normalisation of S. viridis RT-qPCR expression data. Eleven putative candidate reference genes were identified and examined across thirteen different S. viridis tissues. Of these, the geNorm and NormFinder analysis software identified SERINE / THERONINE - PROTEIN PHOSPHATASE 2A ( PP2A ), 5 '- ADENYLYLSULFATE REDUCTASE 6 ( ASPR6 ) and DUAL SPECIFICITY PHOSPHATASE ( DUSP ) as the most suitable combination of reference genes for the accurate and reliable normalisation of S. viridis RT-qPCR expression data. To demonstrate the suitability of the three selected reference genes, PP2A , ASPR6 and DUSP , were used to normalise the expression of CINNAMYL ALCOHOL DEHYDROGENASE ( CAD ) genes across the same tissues. This approach readily demonstrated the suitably of the three

Field evaluation of an open and polyvalent universal HIV-1/SIVcpz/SIVgor quantitative RT-PCR assay for HIV-1 viral load monitoring in comparison to Abbott RealTime HIV-1 in Cameroon.

Science.gov (United States)

Guichet, Emilande; Aghokeng, Avelin; Eymard-Duvernay, Sabrina; Vidal, Nicole; Ayouba, Ahidjo; Mpoudi Ngole, Eitel; Delaporte, Eric; Ciaffi, Laura; Peeters, Martine

2016-11-01

With the increasing demand of HIV viral load (VL) tests in resource-limited countries (RLCs) there is a need for assays at affordable cost and able to quantify all known HIV-1 variants. VLs obtained with a recently developed open and polyvalent universal HIV-1/SIVcpz/SIVgor RT-qPCR were compared to Abbott RealTime HIV-1 assay in Cameroon. On 474 plasma samples, characterized by a wide range of VLs and a broad HIV-1 group M genetic diversity, 97.5% concordance was observed when using the lower detection limit of each assay. When using the threshold of 3.00 log 10 copies/mL, according to WHO guidelines to define virological failure (VF) in RLCs, the concordance was 94.7%, 360/474 versus 339/474 patients were identified with VF with the new assay and Abbott RealTime HIV-1, respectively. Higher VLs were measured with the new assay, +0.47 log 10 copies/mL (95% CI; 0.42-0.52) as shown with Bland-Altman analysis. Eleven samples from patients on VF with drug resistance were not detected by Abbott RealTime HIV-1 versus two only with the new assay. Overall, our study showed that the new assay can be easily implemented in a laboratory in RLCs with VL experience and showed good performance on a wide diversity of HIV-1 group M variants. Copyright © 2016 Elsevier B.V. All rights reserved.

The incidence and functional consequences of RT-associated cardiac perfusion defects

International Nuclear Information System (INIS)

Marks, Lawrence B.; Yu Xiaoli; Prosnitz, Robert G.; Zhou Sumin; Hardenbergh, Patricia H.; Blazing, Michael; Hollis, Donna; Lind, Pehr; Tisch, Andrea; Wong, Terence Z.; Borges-Neto, Salvador

2005-01-01

Purpose: Radiation therapy (RT) for left-sided breast cancer has been associated with cardiac dysfunction. We herein assess the temporal nature and volume dependence of RT-induced left ventricular perfusion defects and whether these perfusion defects are related to changes in cardiac wall motion or alterations in ejection fraction. Methods: From 1998 to 2001, 114 patients were enrolled onto an IRB-approved prospective clinical study to assess changes in regional and global cardiac function after RT for left-sided breast cancer. Patients were imaged 30 to 60 minutes after injection of technetium 99m sestamibi or tetrofosmin. Post-RT perfusion scans were compared with the pre-RT studies to assess for RT-induced perfusion defects as well as functional changes in wall motion and ejection fraction. Two-tailed Fisher's exact test and the Cochran-Armitage test for linear trends were used for statistical analysis. Results: The incidence of new perfusion defects 6, 12, 18, and 24 months after RT was 27%, 29%, 38%, and 42%, respectively. New defects occurred in approximately 10% to 20% and 50% to 60% of patients with less than 5%, and greater than 5%, of their left ventricle included within the RT fields, respectively (p = 0.33 to 0.00008). The rates of wall motion abnormalities in patients with and without perfusion defects were 12% to 40% versus 0% to 9%, respectively; p values were 0.007 to 0.16, depending on the post-RT interval. Conclusions: Radiation therapy causes volume-dependent perfusion defects in approximately 40% of patients within 2 years of RT. These perfusion defects are associated with corresponding wall-motion abnormalities. Additional study is necessary to better define the long-term functional consequences of RT-induced perfusion defects

Pärt: Fratres / Robert Cowan

Index Scriptorium Estoniae

Cowan, Robert

1995-01-01

Uuest heliplaadist "Pärt: Fratres (seven versions). Festina Lente. Cantus in Memory of Benjamin Britten. Summa. Peter Manning (vn.), France Springuel (vc.), Mireille Gleizes (pf.), I Fiamminghi. Telare CD CD80387 (79 minutes)

Tiempo de llegada de solutos sorbentes bajo condiciones de flujo convergente. Momentos estadísticos condicionados.

OpenAIRE

Castillo Cerdà, Cristina

2003-01-01

El análisis del tiempo de llegada en transporte de solutos en el subsuelo es una herramienta indispensable en los estudios de rehabilitación de acuíferos y en los estudios hidrogeológicos en general. Se plantea un estudio numérico con una metodologia estocástica para determinar los momentos estadísticos del tiempo de llegada de las partículas de un contaminante no conservativo en condiciones de flujo convergente en un medio heterogéneo. Los momentos estadísticos se consideran condicionados...

Sensitive and specific detection of classical scrapie prions in the brain of goats by real-time quaking-induced conversion

Science.gov (United States)

The real-time quaking-induced conversion (RT-QuIC) is a rapid, specific, and sensitive prion seeding activity detection assay that uses recombinant prion protein (rPrPSen) to detect sub-infectious levels of the abnormal isoforms of the prion protein (PrPSc). Although RT-QuIC has been successfully us...

Effect of Continuous Glucose Monitoring on Glycemic Control, Acute Admissions, and Quality of Life: A Real-World Study.

Science.gov (United States)

Charleer, Sara; Mathieu, Chantal; Nobels, Frank; De Block, Christophe; Radermecker, Regis P; Hermans, Michel P; Taes, Youri; Vercammen, Chris; T'Sjoen, Guy; Crenier, Laurent; Fieuws, Steffen; Keymeulen, Bart; Gillard, Pieter

2018-03-01

Randomized controlled trials evaluating real-time continuous glucose monitoring (RT-CGM) patients with type 1 diabetes (T1D) show improved glycemic control, but limited data are available on real-world use. To assess impact of RT-CGM in real-world settings on glycemic control, hospital admissions, work absenteeism, and quality of life (QOL). Prospective, observational, multicenter, cohort study. A total of 515 adults with T1D on continuous subcutaneous insulin infusion (CSII) therapy starting in the Belgian RT-CGM reimbursement program. Initiation of RT-CGM reimbursement. Hemoglobin A1c (HbA1c) evolution from baseline to 12 months. Between September 1, 2014, and December 31, 2016, 515 adults entered the reimbursement system. Over this period, 417 (81%) patients used RT-CGM for at least 12 months. Baseline HbA1c was 7.7 ± 0.9% (61 ± 9.8 mmol/mol) and decreased to 7.4 ± 0.8% (57 ± 8.7 mmol/mol) at 12 months (P < 0.0001). Subjects who started RT-CGM because of insufficient glycemic control showed stronger decrease in HbA1c at 4, 8, and 12 months compared with patients who started because of hypoglycemia or pregnancy. In the year preceding reimbursement, 16% of patients were hospitalized for severe hypoglycemia or ketoacidosis in contrast to 4% (P < 0.0005) the following year, with decrease in admission days from 54 to 18 per 100 patient years (P < 0.0005). In the same period, work absenteeism decreased and QOL improved significantly, with strong decline in fear of hypoglycemia. Sensor-augmented pump therapy in patients with T1D followed in specialized centers improves HbA1c, fear of hypoglycemia, and QOL, whereas work absenteeism and admissions for acute diabetes complications decreased.

Real-time Quaking-induced Conversion Assay for Detection of CWD Prions in Fecal Material.

Science.gov (United States)

Cheng, Yo Ching; Hannaoui, Samia; John, Theodore Ralph; Dudas, Sandor; Czub, Stefanie; Gilch, Sabine

2017-09-29

The RT-QuIC technique is a sensitive in vitro cell-free prion amplification assay based mainly on the seeded misfolding and aggregation of recombinant prion protein (PrP) substrate using prion seeds as a template for the conversion. RT-QuIC is a novel high-throughput technique which is analogous to real-time polymerase chain reaction (PCR). Detection of amyloid fibril growth is based on the dye Thioflavin T, which fluoresces upon specific interaction with ᵦ-sheet rich proteins. Thus, amyloid formation can be detected in real time. We attempted to develop a reliable non-invasive screening test to detect chronic wasting disease (CWD) prions in fecal extract. Here, we have specifically adapted the RT-QuIC technique to reveal PrP Sc seeding activity in feces of CWD infected cervids. Initially, the seeding activity of the fecal extracts we prepared was relatively low in RT-QuIC, possibly due to potential assay inhibitors in the fecal material. To improve seeding activity of feces extracts and remove potential assay inhibitors, we homogenized the fecal samples in a buffer containing detergents and protease inhibitors. We also submitted the samples to different methodologies to concentrate PrP Sc on the basis of protein precipitation using sodium phosphotungstic acid, and centrifugal force. Finally, the feces extracts were tested by optimized RT-QuIC which included substrate replacement in the protocol to improve the sensitivity of detection. Thus, we established a protocol for sensitive detection of CWD prion seeding activity in feces of pre-clinical and clinical cervids by RT-QuIC, which can be a practical tool for non-invasive CWD diagnosis.

Estilos de aprendizaje y habilidades de gestión del tiempo académico en Educación Secundaria

Directory of Open Access Journals (Sweden)

Francisco Pérez-González

2003-01-01

Full Text Available El objetivo principal de este trabajo es analizar la relación entre estilos de aprendizaje, habilidades de gestión del tiempo y resultados académicos en Educación Secundaria. En el estudio participan 111 sujetos que en el curso académico 2000-2001 realizaban sus estudios en Institutos de Educación Secundaria de la Comunidad Valenciana (España, a los que se aplicaron sendas adaptaciones del Inventory of Learning Processes y del TimeManagement Questionnaire y de los que se obtuvieron, adicionalmente, sus resultados académicos. Un análisis correlacional evidencia la estrecha relación entre procesos de aprendizaje y habilidades de gestión de tiempo,tanto entre las puntuaciones globales que ofrecen los instrumentos utilizados como entre las distintas dimensiones específicas que evalúan: Procesamiento Profundo, Procesamiento Elaborativo y Estudio metódico están relacionadascon la actitud de utilizar constructivamente el tiempo de estudio, mientras que los dos últimos también se relacionan con la planificación a corto y largo plazo.Del mismo modo, los análisis de regresión múltiple efectuados destacan quetanto los procesos de aprendizaje como las habilidades de gestión de tiempo son predictores eficaces de los resultados académicos, constatando que los estilos de aprendizaje presentan una capacidad explicativa del rendimiento escolar muy superior a las habilidades de gestión del tiempo.

Accuracy evaluation of a new real-time continuous glucose monitoring algorithm in hypoglycemia

DEFF Research Database (Denmark)

Mahmoudi, Zeinab; Jensen, Morten Hasselstrøm; Johansen, Mette Dencker

2014-01-01

UNLABELLED: Abstract Background: The purpose of this study was to evaluate the performance of a new continuous glucose monitoring (CGM) calibration algorithm and to compare it with the Guardian(®) REAL-Time (RT) (Medtronic Diabetes, Northridge, CA) calibration algorithm in hypoglycemia. SUBJECTS...... AND METHODS: CGM data were obtained from 10 type 1 diabetes patients undergoing insulin-induced hypoglycemia. Data were obtained in two separate sessions using the Guardian RT CGM device. Data from the same CGM sensor were calibrated by two different algorithms: the Guardian RT algorithm and a new calibration...... algorithm. The accuracy of the two algorithms was compared using four performance metrics. RESULTS: The median (mean) of absolute relative deviation in the whole range of plasma glucose was 20.2% (32.1%) for the Guardian RT calibration and 17.4% (25.9%) for the new calibration algorithm. The mean (SD...

PRONÓSTICO DE LA DEMANDA MENSUAL DE ELECTRICIDAD CON SERIES DE TIEMPO

Directory of Open Access Journals (Sweden)

Víctor Daniel Gil Vera

Full Text Available La alta volatilidad de los precios de la electricidad ha motivado a diseñar a investigadores y académicos modelos que permitan pronosticar la demanda de la misma en el corto, mediano y largo plazo. Este trabajo presenta un modelo de pronóstico de la demanda mensual de electricidad basado en series de tiempo, el cual toma como base los valores de la demanda de energía eléctrica en el Sistema Interconectado Nacional (SIN de Colombia en el período 2008-2014. Se concluye que las series de tiempo aplicadas al pronóstico de la demanda de electricidad permiten predecir con un alto grado de exactitud demandas futuras de energía eléctrica (GWh, información que puede generar ventajas a productores, distribuidores y grandes consumidores a la hora de establecer estrategias, optimizar su operación y realizar contratos bilaterales.

Expansion of the Real-time Sport-land Information System for NOAA/National Weather Service Situational Awareness and Local Modeling Applications

Science.gov (United States)

Case, Jonathan L.

2014-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center has been running a real-time version of the Land Information System (LIS) since summer 2010 (hereafter, SPoRTLIS). The real-time SPoRT-LIS runs the Noah land surface model (LSM) in an offline capacity apart from a numerical weather prediction model, using input atmospheric and precipitation analyses (i.e., "forcings") to drive the Noah LSM integration at 3-km resolution. Its objectives are to (1) produce local-scale information about the soil state for NOAA/National Weather Service (NWS) situational awareness applications such as drought monitoring and assessing flood potential, and (2) provide land surface initialization fields for local modeling initiatives. The current domain extent has been limited by the input atmospheric analyses that drive the Noah LSM integration within SPoRT-LIS, specifically the National Centers for Environmental Prediction (NCEP) Stage IV precipitation analyses. Due to the nature of the geographical edges of the Stage IV precipitation grid and its limitations in the western U.S., the SPoRT-LIS was originally confined to a domain fully nested within the Stage IV grid, over the southeastern half of the Conterminous United States (CONUS). In order to expand the real-time SPoRT-LIS to a full CONUS domain, alternative precipitation forcing datasets were explored in year-long, offline comparison runs of the Noah LSM. Based on results of these comparison simulations, we chose to implement the radar/gauge-based precipitation analyses from the National Severe Storms Laboratory as a replacement to the Stage IV product. The Multi-Radar Multi-Sensor (MRMS; formerly known as the National Mosaic and multi-sensor Quantitative precipitation estimate) product has full CONUS coverage at higher-resolution, thereby providing better coverage and greater detail than that of the Stage IV product. This paper will describe the expanded/upgraded SPoRT-LIS, present comparisons between the

Evaluating the Impacts of NASA/SPoRT Daily Greenness Vegetation Fraction on Land Surface Model and Numerical Weather Forecasts

Science.gov (United States)

Bell, Jordan R.; Case, Jonathan L.; LaFontaine, Frank J.; Kumar, Sujay V.

2012-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center has developed a Greenness Vegetation Fraction (GVF) dataset, which is updated daily using swaths of Normalized Difference Vegetation Index data from the Moderate Resolution Imaging Spectroradiometer (MODIS) data aboard the NASA EOS Aqua and Terra satellites. NASA SPoRT began generating daily real-time GVF composites at 1-km resolution over the Continental United States (CONUS) on 1 June 2010. The purpose of this study is to compare the National Centers for Environmental Prediction (NCEP) climatology GVF product (currently used in operational weather models) to the SPoRT-MODIS GVF during June to October 2010. The NASA Land Information System (LIS) was employed to study the impacts of the SPoRT-MODIS GVF dataset on a land surface model (LSM) apart from a full numerical weather prediction (NWP) model. For the 2010 warm season, the SPoRT GVF in the western portion of the CONUS was generally higher than the NCEP climatology. The eastern CONUS GVF had variations both above and below the climatology during the period of study. These variations in GVF led to direct impacts on the rates of heating and evaporation from the land surface. In the West, higher latent heat fluxes prevailed, which enhanced the rates of evapotranspiration and soil moisture depletion in the LSM. By late Summer and Autumn, both the average sensible and latent heat fluxes increased in the West as a result of the more rapid soil drying and higher coverage of GVF. The impacts of the SPoRT GVF dataset on NWP was also examined for a single severe weather case study using the Weather Research and Forecasting (WRF) model. Two separate coupled LIS/WRF model simulations were made for the 17 July 2010 severe weather event in the Upper Midwest using the NCEP and SPoRT GVFs, with all other model parameters remaining the same. Based on the sensitivity results, regions with higher GVF in the SPoRT model runs had higher evapotranspiration and

Imagen familiar y concepto de tiempo. Propuesta para tercer grado de educación primaria.

OpenAIRE

Carreras-Soler, Anna

2014-01-01

El presente Trabajo de Fin de Grado hace una aproximación a la didáctica de la historia y el modo cómo se comprende el concepto del tiempo en la Educación Primaria. Con el principio de la imagen como código de comunicación de nuestro tiempo y sus posibilidades a través de las TIC, analiza el papel que desempeña en este proceso cognitivo, desde el estudio de los parámetros de la percepción visual, las posibilidades emocionales que ofrece y las estrategias para su correcta interpretación. En...

Validation of endogenous reference genes for qRT-PCR analysis of human visceral adipose samples.

Science.gov (United States)

Mehta, Rohini; Birerdinc, Aybike; Hossain, Noreen; Afendy, Arian; Chandhoke, Vikas; Younossi, Zobair; Baranova, Ancha

2010-05-21

Given the epidemic proportions of obesity worldwide and the concurrent prevalence of metabolic syndrome, there is an urgent need for better understanding the underlying mechanisms of metabolic syndrome, in particular, the gene expression differences which may participate in obesity, insulin resistance and the associated series of chronic liver conditions. Real-time PCR (qRT-PCR) is the standard method for studying changes in relative gene expression in different tissues and experimental conditions. However, variations in amount of starting material, enzymatic efficiency and presence of inhibitors can lead to quantification errors. Hence the need for accurate data normalization is vital. Among several known strategies for data normalization, the use of reference genes as an internal control is the most common approach. Recent studies have shown that both obesity and presence of insulin resistance influence an expression of commonly used reference genes in omental fat. In this study we validated candidate reference genes suitable for qRT-PCR profiling experiments using visceral adipose samples from obese and lean individuals. Cross-validation of expression stability of eight selected reference genes using three popular algorithms, GeNorm, NormFinder and BestKeeper found ACTB and RPII as most stable reference genes. We recommend ACTB and RPII as stable reference genes most suitable for gene expression studies of human visceral adipose tissue. The use of these genes as a reference pair may further enhance the robustness of qRT-PCR in this model system.

Validation of endogenous reference genes for qRT-PCR analysis of human visceral adipose samples

Directory of Open Access Journals (Sweden)

Afendy Arian

2010-05-01

Full Text Available Abstract Background Given the epidemic proportions of obesity worldwide and the concurrent prevalence of metabolic syndrome, there is an urgent need for better understanding the underlying mechanisms of metabolic syndrome, in particular, the gene expression differences which may participate in obesity, insulin resistance and the associated series of chronic liver conditions. Real-time PCR (qRT-PCR is the standard method for studying changes in relative gene expression in different tissues and experimental conditions. However, variations in amount of starting material, enzymatic efficiency and presence of inhibitors can lead to quantification errors. Hence the need for accurate data normalization is vital. Among several known strategies for data normalization, the use of reference genes as an internal control is the most common approach. Recent studies have shown that both obesity and presence of insulin resistance influence an expression of commonly used reference genes in omental fat. In this study we validated candidate reference genes suitable for qRT-PCR profiling experiments using visceral adipose samples from obese and lean individuals. Results Cross-validation of expression stability of eight selected reference genes using three popular algorithms, GeNorm, NormFinder and BestKeeper found ACTB and RPII as most stable reference genes. Conclusions We recommend ACTB and RPII as stable reference genes most suitable for gene expression studies of human visceral adipose tissue. The use of these genes as a reference pair may further enhance the robustness of qRT-PCR in this model system.

La identidad como categoría relacional en el tiempo-lugar de recreo

Directory of Open Access Journals (Sweden)

Luis Guillermo Jaramillo Echeverry

2013-08-01

Full Text Available Construcción de Identidad en el tiempo de recreo: un estudio en cinco escuelas de la ciudad de Popayán’ es el título de la investigación que sirvió de fuente para este artículo. En él se presenta el enfoque y diseño metodológico usado, conocido como ‘la complementariedad’, constituido por tres momentos: pre-configuración, configuración y re-configuración de la realidad. En el estudio el recreo emerge como ese tiempo-lugar en el cual los niños se expresan como sujetos activos y participes de su realidad. En el recreo serán producidas formas de identidad asociadas con la capacidad de decisión, con los procesos de alteridad y con los sentidos otorgados a la normatividad institucional.

Validation of tumor markers in central nervous system germ cell tumors by real-time reverse transcriptase polymerase chain reaction using formalin-fixed paraffin-embedded tissues.

Science.gov (United States)

Kim, Dowhan; Lee, Da Hye; Choi, Junjeong; Shim, Kyu Won; Kim, Se Hoon

2013-01-01

The therapeutic protocols for treatment of germinomas and non-germinomatous germ cell tumors (NGGCTs) are completely different, so it is important to distinguish pure germinomas from NGGCTs. As it can be difficult to diagnose by morphology alone, immunohisto-chemistry (IHC) has been widely used as an ancillary test to improve diagnostic accuracy. However, IHC has limitations due to the misinterpretation of results or the aberrant loss of immunoreactivity. However, real-time RT-PCR has certain advantages over IHC, including its quantitative nature. The aim of our study was to evaluate the usefulness of real-time RT-PCR on formalin-fixed paraffin-embedded (FFPE) tissue blocks for the diagnosis of germ cell tumors of the central nervous system. We selected eight markers of germ cell tumors using a literature search, and validated them using real-time RT-PCR. Among them, POU5F1, NANOG and TGFB2 were statistically significant (P=0.05) in multiple comparisons (MANOVA) of three groups (pure germinomas, mature teratomas and malignant germ cell tumors). Two-group (pure germinomas and NGGCTs) discriminant analysis achieved a 70.0% success rate in cross-validation. We concluded that real-time RT-PCR using FFPE tissue has adequate validating power comparable to IHC in the diagnosis of central nervous system germ cell tumors; therefore, when IHC is not available, not conclusive or not informative, RT-PCR is a potential alternative to a repeat biopsy.

Artist - analytical RT inspection simulation tool

International Nuclear Information System (INIS)

Bellon, C.; Jaenisch, G.R.

2007-01-01

The computer simulation of radiography is applicable for different purposes in NDT such as for the qualification of NDT systems, the prediction of its reliability, the optimization of system parameters, feasibility analysis, model-based data interpretation, education and training of NDT/NDE personnel, and others. Within the framework of the integrated project FilmFree the radiographic testing (RT) simulation software developed by BAM is being further developed to meet practical requirements for inspection planning in digital industrial radiology. It combines analytical modelling of the RT inspection process with the CAD-orientated object description applicable to various industrial sectors such as power generation, railways and others. (authors)

"Siempre" and "todo el tiempo": Investigating Semantic Convergence in a Bilingual Dialect.

Science.gov (United States)

Garcia, MaryEllen

2001-01-01

Investigates to what extent the variability between "siempre" and "todo el tiempo" in the San Antonio dialect demonstrates semantic convergence between them, and whether there will be a selection of the innovating form for the future. Examination of this variability may illuminate questions of how such changes occur…

Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue

Directory of Open Access Journals (Sweden)

Ravid Rivka

2008-05-01

Full Text Available Abstract Background Studies of gene expression in post mortem human brain can contribute to understanding of the pathophysiology of neurodegenerative diseases, including Alzheimer's disease (AD, Parkinson's disease (PD and dementia with Lewy bodies (DLB. Quantitative real-time PCR (RT qPCR is often used to analyse gene expression. The validity of results obtained using RT qPCR is reliant on accurate data normalization. Reference genes are generally used to normalize RT qPCR data. Given that expression of some commonly used reference genes is altered in certain conditions, this study aimed to establish which reference genes were stably expressed in post mortem brain tissue from individuals with AD, PD or DLB. Results The present study investigated the expression stability of 8 candidate reference genes, (ubiquitin C [UBC], tyrosine-3-monooxygenase [YWHAZ], RNA polymerase II polypeptide [RP II], hydroxymethylbilane synthase [HMBS], TATA box binding protein [TBP], β-2-microglobulin [B2M], glyceraldehyde-3-phosphate dehydrogenase [GAPDH], and succinate dehydrogenase complex-subunit A, [SDHA] in cerebellum and medial temporal gyrus of 6 AD, 6 PD, 6 DLB subjects, along with 5 matched controls using RT qPCR (TaqMan® Gene Expression Assays. Gene expression stability was analysed using geNorm to rank the candidate genes in order of decreasing stability in each disease group. The optimal number of genes recommended for accurate data normalization in each disease state was determined by pairwise variation analysis. Conclusion This study identified validated sets of mRNAs which would be appropriate for the normalization of RT qPCR data when studying gene expression in brain tissue of AD, PD, DLB and control subjects.

Evaluation of a duplex reverse-transcription real-time PCR assay for the detection of encephalomyocarditis virus.

Science.gov (United States)

Qin, Shaomin; Underwood, Darren; Driver, Luke; Kistler, Carol; Diallo, Ibrahim; Kirkland, Peter D

2018-06-01

We evaluated a fluorogenic probe-based assay for the detection of encephalomyocarditis virus (EMCV) by comparing a set of published primers and probe to a new set of primers and probe. The published reagents failed to amplify a range of Australian isolates and an Italian reference strain of EMCV. In contrast, an assay based on 2 new sets of primers and probes that were run in a duplex reverse-transcription real-time PCR (RT-rtPCR) worked well, with high amplification efficiency. The analytical sensitivity was ~100-fold higher than virus isolation in cell culture. The intra-assay variation was 0.21-4.90%. No cross-reactivity was observed with a range of other porcine viruses. One hundred and twenty-two clinical specimens were tested simultaneously by RT-rtPCR and virus isolation in cell culture; 72 specimens gave positive results by RT-rtPCR, and 63 of these were also positive by virus isolation. Of 245 archived cell culture isolates of EMCV that were tested in the RT-rtPCR, 242 samples were positive. The new duplex RT-rtPCR assay is a reliable tool for the detection of EMCV in clinical specimens and for use in epidemiologic investigations.

Arvo Pärt jagab preemia koolidele / Rebekka Lotman, Eva Kübar ; kommenteerinud Arvo Pärt

Index Scriptorium Estoniae

Lotman, Rebekka, 1978-

2009-01-01

Kultuuriministeerium tegi ettepaneku anda Arvo Pärdile elutööpreemia, millega kaasneva rahasumma lubas Pärt kinkida Rakvere ja Paide muusikakoolile. Elutööpreemiad saavad veel Ellen Niit ja Aarne Üksküla

Simultaneous detection of three lily viruses using Triplex IC-RT-PCR.

Science.gov (United States)

Zhang, Yubao; Wang, Yajun; Xie, Zhongkui; Yang, Guo; Guo, Zhihong; Wang, Le

2017-11-01

Viruses commonly infecting lily (Lilium spp.) include: Lily symptomless virus (LSV), Cucumber mosaic virus (CMV) and Lily mottle virus (LMoV). These viruses usually co-infect lilies causing severe economic losses in terms of quantity and quality of flower and bulb production around the world. Reliable and precise detection systems need to be developed for virus identification. We describe the development of a triplex immunocapture (IC) reverse transcription (RT) polymerase chain reaction (PCR) assay for the simultaneous detection of LSV, CMV and LMoV. The triplex IC-RT-PCR was compared with a quadruplex RT-PCR assay. Relative to the quadruplex RT-PCR, the specificity of the triplex IC-RT-PCR system for LSV, CMV and LMoV was 100% for field samples. The sensitivity of the triplex IC-RT-PCR system was 99.4%, 81.4% and 98.7% for LSV, CMV and LMoV, respectively. Agreement (κ) between the results obtained from the two tests was 0.968, 0.844 and 0.984 for LSV, CMV and LMoV, respectively. This is the first report of the simultaneous detection of LSV, CMV and LMoV in a triplex IC-RT-PCR assay. In particular we believe this convenient and reliable triplex IC-RT-PCR method could be used routinely for large-scale field surveys or crop health monitoring of lily. Copyright © 2017. Published by Elsevier B.V.

Prospección estratégica para la red de observadores del tiempo atmosférico

OpenAIRE

Pulgarín Calle, David Esteban; Jiménez, José Fernando

2012-01-01

La Red de Observadores del Tiempo Atmosférico (RedOTA) es un sistema reticular de nodos técnicos y sociales que interactúan con el fin de producir y compartir información sobre el tiempo atmosférico y de apoyar dinámicas culturales y educativas sobre estos mismos temas. Este artículo describe el proceso de formulación de una estrategia de desarrollo para llevar a la red a una etapa de crecimiento y mejoramiento de la calidad de la información ambiental. Primero, se hace un recuento de los pro...

La distribución del tiempo y del trabajo en la enseñanza primaria en España (1900-1936

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Antonio VIÑAO FRAGO

2013-11-01

Full Text Available El objeto de este artículo es estudiar la distribución diaria y semanal del tiempo escolar en el grado primario de la escuela en la España de 1900 a 1936. El análisis se desarrolla desde tres puntos de partida: las propuestas teóricas de distribución y usos del tiempo, la normativa vigente, y la realidad de las prácticas escolares. Este estudio demuestra, no sólo los contrastes y las influencias recíprocas entre estos tres referentes, sino también las diferencias entre las escuelas rurales y las urbanas, las escuelas unitarias y las graduadas, y entre el tiempo escolar no flexible y uniforme y los tiempos de la vida familiar y el trabajo. Con ello se justifica la discordancia que existe entre ellos dando lugar a la asistencia irregular o al absentismo de los niños en la escuela.

[REAL TIME POLYMERASE CHAIN REACTION IN TULAREMIA LABORATORY DIAGNOSTICS].

Science.gov (United States)

Kormilitsyna, M I; Mescheryakova, I S; Mikhailova, T V; Dobrovolsky, A A

2015-01-01

Enhancement of tularemia laboratory diagnostics by F. tularensis DNA determination in blood sera of patients using real time polymerase chain reaction (RT-PCR). 39 blood sera of patients obtained during transmissive epidemic outbreak of tularemia in Khanty-Mansiysk in 2013 were studied in agglutination reaction, passive hemagglutination, RT-PCR. Specific primers and fluorescent probes were used: ISFTu2F/R+ISFTu2P, Tu14GF/R+tul4-PR2. Advantages of using RT-PCR for early diagnostics of tularemia, when specific antibodies are not detected using traditional immunologic methods, were established. Use of a combination of primers and ISFTu2F/R+ISFTu2P probe allowed to detect F. tularensis DNA in 100% of sera, whereas Tul4G F/R+tul4-PR2 combination--92% of sera. The data were obtained when DNA was isolated from sera using "Proba Rapid" express method. Clinical-epidemiologic diagnosis oftularemia was confirmed by both immune-serologic and RT-PCR methods when sera were studied 3-4 weeks after the onset of the disease. RT-PCR with ISFTu2F/R primers and fluorescent probe ISFTu2P, having high sensitivity and specificity, allows to determine F. tularensis DNA in blood sera of patients at both the early stage and 3-4 weeks after the onset of the disease.

Märt Haamer: Tsahknal pole Overalliga mingisugust seost / Märt Haamer ; intervjueerinud Jan Jõgis-Laats

Index Scriptorium Estoniae

Haamer, Märt, 1973-

2009-01-01

Overall Eesti juhi Märt Haameri väitel pole Anders Tsahkna ühtegi riigihanget Overalli ettevõtetele suunanud. Overalli omandusse kuuluv firma Gennet Lab on olnud alltöövõtja paaris E-tervise Sihtasutuse korraldatud hankes

Validation of Suitable Reference Genes for RT-qPCR Data in Achyranthes bidentata Blume under Different Experimental Conditions

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Jinting Li

2017-05-01

Full Text Available Real-time quantitative polymerase chain reaction (RT-qPCR is a sensitive technique for gene expression studies. However, choosing the appropriate reference gene is essential to obtain reliable results for RT-qPCR assays. In the present work, the expression of eight candidate reference genes, EF1-α (elongation factor 1-α, GAPDH (glyceraldehyde 3-phosphate dehydrogenase, UBC (ubiquitin-conjugating enzyme, UBQ (polyubiquitin, ACT (actin, β-TUB (β-tubulin, APT1 (adenine phosphoribosyltransferase 1, and 18S rRNA (18S ribosomal RNA, was evaluated in Achyranthes bidentata samples using two algorithms, geNorm and NormFinder. The samples were classified into groups according to developmental stages, various tissues, stresses (cold, heat, drought, NaCl, and hormone treatments (MeJA, IBA, SA. Suitable combination of reference genes for RT-qPCR normalization should be applied according to different experimental conditions. In this study, EF1-α, UBC, and ACT genes were verified as the suitable reference genes across all tested samples. To validate the suitability of the reference genes, we evaluated the relative expression of CAS, which is a gene that may be involved in phytosterol synthesis. Our results provide the foundation for gene expression analysis in A. bidentata and other species of Amaranthaceae.

REMOCIÓN DE SEMILLAS DE CHILCO (Henriette/la fissanthera EN EL PARQUE TINIGUA: FACTORES QUE INFLUYEN EN EL TIEMPO DE VISITA

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Marta SofíaAgudelo

2001-06-01

Full Text Available El tiempo de visita de animales frugívoros a las plantas en las que se alimentan puede tener implicaciones en la eficiencia de la dispersión de semillas. En este trabajo se cuantificaron la remoción de semillas y tiempos de permanencia de frugívoros en tres árboles de Henriettellafissanthera (Melastomataceae, con el fin de describir tasas de remoción por difere.ntes vectores y probar tres características de los dispersores que pueden afectar los tiempos de visita: nivel críptico, tipo de dieta y capacidad intestinal. En un total de 85 horas se observaron 3 especies de primates y 24 de aves consumiendo frutos. Como era de esperarse, dado que los frutos de H. fissanthera corresponden al síndrome de dispersión por aves, éstas fueron las que removieron la mayoría de las semillas, sin embargo los mamíferos removieron una proporción considerable (40%. Se encontró que el árbol más grande fue más visitado que los más pequeños. Los resultados indicaron que ni el nivel críptico, ni el tipo de dieta están asociados con el tiempo promedio de visita, posiblemente porque los animales no están especialmente expuestos a predación cuando consumen frutos de esta especie y porque las preferencias alimenticias por diferentes tipos de frutos por parte de los dispersores determinan de mayor forma la duración del tiempo de visita. No se encontró una correlación significativa entre peso corporal (como variable aproximada del tamaño intestinal, y tiempo promedio de visita, aunque existe una asociación positiva entre estas dos variables. Esto sugiere que otros factores deben ser tenidos en cuenta para explicar el tiempo de visita a estos árboles por diferentes especies dispersoras (ej. cantidad de frutos, distribución espacial de los árboles y agresiones interespecíficas.

RT-PLG

DEFF Research Database (Denmark)

Yahya, Bernardo Nugroho; Khosiawan, Yohanes; Choi, Woosik

2016-01-01

Streaming process mining has been rising as an emergent tool to analyze industrial practices. Obviously, the advance of streaming process mining requires the availability of a suite of real-world business processes and the execution logs in the real time manner. Literally, it is hard to obtain it...

Preparation of rT3 in human serum ria kit

International Nuclear Information System (INIS)

Zhang Peixuan; Han Shiquan; Zhang Liling

1991-02-01

A method for the measurement of rT 3 in serum by radioimmunoassay is presented. The double antibody plus polyethylene glycol was used as separating reagent. The method is simple, precise and sensitive. Serum rT 3 values of normal (n = 61) were 47.7 ± 11.34 x 10 -8 g/L (X-bar ± SD). Patients with hyperthyroidism (n = 8) serum rT 3 values were 272.2 ± 91.1 x 10 -8 g/L (X-bar ± SD) and patients with hypothyroidism (n = 2) serum rT 3 values were 11.4 ± 8.3 x 10 -8 g/L (X-bar ± SD). It appears to be a useful diagnostic procedure for thyroid diseases

Soft-Rt: software for IMRT simulations based on MCNPX

International Nuclear Information System (INIS)

Ferreira F, T. C.; Campos, T.

2015-10-01

Intensity Modulated Radiation Therapy (IMRT) is an advanced treatment technique, widely used in external radiotherapy. This paper presents the Soft-Rt which allows the simulation of an entire IMRT treatment protocol. The Soft-Rt performs a full three-dimensional rendering of a set of patient images, including the definitions of region of interest with organs in risk, and the target tumor volume and margins (PTV). Thus, a more accurate analysis and planning can be performed, taking into account the features and orientation of the radiation beams. The exposed tissues as well as the amount of absorbed dose is depicted in healthy and/or cancerous tissues. As conclusion, Soft-Rt can predict dose on the PTV accurately, preserving the surrounding healthy tissues. Soft-Rt is coupled with SISCODES code. The SISCODES code is firstly applied to segment the set of CT or MRI patient images in distinct tissues pointing out its respective density and chemical compositions. Later, the voxel model is export to the Soft-Rt IMRT planning module in which a full treatment planning is created. All geometrical parameters are sent to the general purpose Monte Carlo transport code - MCNP - to simulate the interaction of each incident beam towards to the PTV avoiding organs in risk. The normalized dose results are exported to the Soft-Rt out-module, in which the three-dimensional model visualization is shown in a transparent glass procedure adopting gray scale for the dependence on the mass density of the correlated tissue; while, a color scale to depict dose values in a superimpose protocol. (Author)

Soft-Rt: software for IMRT simulations based on MCNPX

Energy Technology Data Exchange (ETDEWEB)

Ferreira F, T. C. [Centro de Desenvolvimento da Tecnologia Nuclear / CNEN, Av. Pte. Antonio Carlos 6627, 31270-901 Belo Horizonte, Minas Gerais (Brazil); Campos, T., E-mail: tcff01@gmail.com [Universidade Federal de Minas Gerais, Departamento de Engenharia Nuclear, Programa de Pos Graduacao em Ciencias e Tecnicas Nucleares, Av. Pte. Antonio Carlos 6627, 31270-901 Belo Horizonte, Minas Gerais (Brazil)

2015-10-15

Intensity Modulated Radiation Therapy (IMRT) is an advanced treatment technique, widely used in external radiotherapy. This paper presents the Soft-Rt which allows the simulation of an entire IMRT treatment protocol. The Soft-Rt performs a full three-dimensional rendering of a set of patient images, including the definitions of region of interest with organs in risk, and the target tumor volume and margins (PTV). Thus, a more accurate analysis and planning can be performed, taking into account the features and orientation of the radiation beams. The exposed tissues as well as the amount of absorbed dose is depicted in healthy and/or cancerous tissues. As conclusion, Soft-Rt can predict dose on the PTV accurately, preserving the surrounding healthy tissues. Soft-Rt is coupled with SISCODES code. The SISCODES code is firstly applied to segment the set of CT or MRI patient images in distinct tissues pointing out its respective density and chemical compositions. Later, the voxel model is export to the Soft-Rt IMRT planning module in which a full treatment planning is created. All geometrical parameters are sent to the general purpose Monte Carlo transport code - MCNP - to simulate the interaction of each incident beam towards to the PTV avoiding organs in risk. The normalized dose results are exported to the Soft-Rt out-module, in which the three-dimensional model visualization is shown in a transparent glass procedure adopting gray scale for the dependence on the mass density of the correlated tissue; while, a color scale to depict dose values in a superimpose protocol. (Author)

Disposición a pagar por reducir el tiempo de viaje en Tunja (Colombia): Comparación entre estudiantes y trabajadores con un modelo Logit mixto

OpenAIRE

Luis Gabriel Márquez Díaz

2013-01-01

Resumen: El estudio analiza la diferencia en la disposición a pagar de estudiantes y trabajadores por reducir el tiempo de viaje, en un contexto de elección de modo de transporte para la ciudad de Tunja (Colombia). Se utilizó un modelo logit mixto, calibrado con datos provenientes de una encuesta de preferencias declaradas. La especificación del modelo supuso la variación aleatoria de los coeficientes del tiempo de acceso, tiempo de espera y tiempo de viaje. Se encontró que la disposición a p...

Trends and advances in food analysis by real-time polymerase chain reaction.

Science.gov (United States)

Salihah, Nur Thaqifah; Hossain, Mohammad Mosharraf; Lubis, Hamadah; Ahmed, Minhaz Uddin

2016-05-01

Analyses to ensure food safety and quality are more relevant now because of rapid changes in the quantity, diversity and mobility of food. Food-contamination must be determined to maintain health and up-hold laws, as well as for ethical and cultural concerns. Real-time polymerase chain reaction (RT-PCR), a rapid and inexpensive quantitative method to detect the presence of targeted DNA-segments in samples, helps in determining both accidental and intentional adulterations of foods by biological contaminants. This review presents recent developments in theory, techniques, and applications of RT-PCR in food analyses, RT-PCR addresses the limitations of traditional food analyses in terms of sensitivity, range of analytes, multiplexing ability, cost, time, and point-of-care applications. A range of targets, including species of plants or animals which are used as food ingredients, food-borne bacteria or viruses, genetically modified organisms, and allergens, even in highly processed foods can be identified by RT-PCR, even at very low concentrations. Microfluidic RT-PCR eliminates the separate sample-processing step to create opportunities for point-of-care analyses. We also cover the challenges related to using RT-PCR for food analyses, such as the need to further improve sample handling.

Determinazione quantitativa di HCV-RNA: valutazione comparativa dei saggi Abbott Real-Time e Versant bDNA v.3

Directory of Open Access Journals (Sweden)

Aldo Manzin