WorldWideScience

Sample records for three-dimensional reconstruction rotational

  1. Three-dimensional ICT reconstruction

    International Nuclear Information System (INIS)

    Zhang Aidong; Li Ju; Chen Fa; Sun Lingxia

    2005-01-01

    The three-dimensional ICT reconstruction method is the hot topic of recent ICT technology research. In the context, qualified visual three-dimensional ICT pictures are achieved through multi-piece two-dimensional images accumulation by, combining with thresholding method and linear interpolation. Different direction and different position images of the reconstructed pictures are got by rotation and interception respectively. The convenient and quick method is significantly instructive to more complicated three-dimensional reconstruction of ICT images. (authors)

  2. Three-dimensional ICT reconstruction

    International Nuclear Information System (INIS)

    Zhang Aidong; Li Ju; Chen Fa; Sun Lingxia

    2004-01-01

    The three-dimensional ICT reconstruction method is the hot topic of recent ICT technology research. In the context qualified visual three-dimensional ICT pictures are achieved through multi-piece two-dimensional images accumulation by order, combining with thresholding method and linear interpolation. Different direction and different position images of the reconstructed pictures are got by rotation and interception respectively. The convenient and quick method is significantly instructive to more complicated three-dimensional reconstruction of ICT images. (authors)

  3. Rotational Angiography Based Three-Dimensional Left Atrial Reconstruction: A New Approach for Transseptal Puncture.

    Science.gov (United States)

    Koektuerk, Buelent; Yorgun, Hikmet; Koektuerk, Oezlem; Turan, Cem H; Gorr, Eduard; Horlitz, Marc; Turan, Ramazan G

    2016-02-01

    Rotational angiography is a well-known method for the three-dimensional (3-D) reconstruction of left atrium and pulmonary veins during left-sided atrial arrhythmia ablation procedures. In our study, we aimed to review our experience in transseptal puncture (TSP) using 3-D rotational angiography. We included a total of 271 patients who underwent atrial fibrillation ablation using cryoballoon. Rotational angiography was performed to get the three-dimensional left atrial and pulmonary vein reconstructions using cardiac C-arm computed tomography. The image reconstruction was made using the DynaCT Cardiac software (Siemens, Erlangen, Germany). The mean age of the study population was 61 ± 10 years. The indications for left atrial arrhythmia ablation were paroxysmal AF in 140 patients (52%) and persistent AF patients in 131 (48%) patients. The success rate of TSP using only rotational guidance was (264/271 patients, 97.4%). In the remaining seven patients, transesophageal guidance was used after the initial attempt due to thick interatrial septum in five patients and difficult TSP due to abnormal anatomy and mild pericardial effusion in the remaining two patients. Mean fluoroscopy dosage of the rotational angiography was 4896.4 ± 825.3 μGym(2). The mean time beginning from femoral vein puncture to TSP was 12.3 ± 5.5 min. TSP guided by rotational angiography is a safe and effective method. Our results indicate that integration of rotational angiographic images into the real-time fluoroscopy can guide the TSP during the procedure. © 2015 John Wiley & Sons Ltd.

  4. The comparison of aneurysmal necks measured on three dimensional reconstruction images of rotational DSA and those of traditional DSA

    International Nuclear Information System (INIS)

    Wu Chunhong; Chen Zuoquan; Gu Binxian; Zhang Guiyun

    2006-01-01

    Objective: To evaluate the value of three dimensional reconstruction images of rotational DSA on measuring aneurysmal necks and make a comparison with traditional DSA so as to provide more abundant and accurate information for the embolization of aneurysm. Methods: A comparison was made between the measurement of aneurismal necks from 14 cases with traditional DSA examination and a measurement made on three dimensional reconstruction images of the same patients. Results: There was a difference shown in the measurement of the aneurysmal necks between three dimensional reconstruction images of rotational DSA and those of traditional DSA, outcoming with more angles and data on three dimensional reconstruction images. Conclusions: There are more angles of aneurysmal neck can be shown on rotational 3D DSA especially for the demonstration of the largest aneurysmal neck with a directional value for the intervention. (authors)

  5. Reconstruction of blood propagation in three-dimensional rotational X-ray angiography (3D-RA).

    Science.gov (United States)

    Schmitt, Holger; Grass, Michael; Suurmond, Rolf; Köhler, Thomas; Rasche, Volker; Hähnel, Stefan; Heiland, Sabine

    2005-10-01

    This paper presents a framework of non-interactive algorithms for the mapping of blood flow information to vessels in 3D-RA images. With the presented method, mapping of flow information to 3D-RA images is done automatically without user interaction. So far, radiologists had to perform this task by extensive image comparisons and did not obtain visualizations of the results. In our approach, flow information is reconstructed by forward projection of vessel pieces in a 3D-RA image to a two-dimensional projection series capturing the propagation of a short additional contrast agent bolus. For accurate 2D-3D image registration, an efficient patient motion compensation technique is introduced. As an exemplary flow-related quantity, bolus arrival times are reconstructed for the vessel pieces by matching of intensity-time curves. A plausibility check framework was developed which handles projection ambiguities and corrects for noisy flow reconstruction results. It is based on a linear programming approach to model the feeding structure of the vessel. The flow reconstruction method was applied to 12 cases of cerebral stenoses, AVMs and aneurysms, and it proved to be feasible in the clinical environment. The propagation of the injected contrast agent was reconstructed and visualized in three-dimensional images. The flow reconstruction method was able to visualize different types of useful information. In cases of stenosis of the middle cerebral artery (MCA), flow reconstruction can reveal impeded blood flow depending on the severeness of the stenosis. With cases of AVMs, flow reconstruction can clarify the feeding structure. The presented methods handle the problems imposed by clinical demands such as non-interactive algorithms, patient motion compensation, short reconstruction times, and technical requirements such as correction of noisy bolus arrival times and handling of overlapping vessel pieces. Problems occurred mainly in the reconstruction and segmentation of 3D

  6. Three-Dimensional Reconstruction of Sandpile Interiors

    Science.gov (United States)

    Seidler, G. T.

    2001-03-01

    The granular bed, or sandpile, has become one of the condensed matter physicist's favorite systems. In addition to conceptual appeal, the simplest sandpile of monodisperse hard spheres is a valuable model system for understanding powders, liquids, and metallic glasses. Any fundamental approach to the transport and mechanical properties of three-dimensional mesoscale disordered materials must follow from a thorough understanding of their structure. However, in the overwhelming majority of cases, structure measurements have been limited to the mean filling fraction and the structural autocorrelation function. This is particularly unfortunate in the ongoing sandpile renaissance, where some of the most interesting questions concern structure and the relationship between structure and dynamics. I will discuss the combination of synchrotron x-ray microtomography and computer vision algorithms to perform three-dimensional virtual reconstructions of real sandpiles. This technique is rapid and noninvasive, and is applicable to samples large enough to separate bulk and boundary properties. The resulting complete knowledge of structure can be used to calculate otherwise inaccessible correlation functions. I will present results for several measures of the bond-orientational order in three-dimensional sandpiles, including fabric tensors and nematic order parameters.

  7. Wavefront reconstruction from three dimensional intensity measurements

    International Nuclear Information System (INIS)

    Nugent, K.A.; Roberts, A.

    1992-01-01

    In this paper it is shown that is is possible to use intensity measurements taken in a series of planes perpendicular to some axis to produce full four-dimensional information about the cross spectral density function. This measurement of the intensity in any given plane gives a series of slices thorough the four-dimensional Fourier transform of the Brightness function. For a coherent field, this information also enables us to calculate the phase and amplitude of the electric field in any given plane. If a finite measurement range is taken, the resolution of the reconstructed field is degraded, but in the limit of measurements taken over an infinite range, the full Fresnel field can be calculated. When considering the practical application of this technique to real data, the delta function definition needs to be redefined in terms of a 'top-hat' function. This does not alter any of the central conclusions obtained using delta functions, but enables the production of an algorithm for the reconstruction of the electric field from real intensity measurements. This was applied to a simulation of the simple case of a Gaussian beam. The reconstructed phase and amplitude of the electric field so obtained were in good agreement with assumed values. 14 refs., 5 figs

  8. Three-dimensional reconstructions of solid surfaces using conventional microscopes.

    Science.gov (United States)

    Ficker, Tomáš; Martišek, Dalibor

    2016-01-01

    The three-dimensional digital replicas of solid surfaces are subject of interest of different branches of science and technology. The present paper in its introductory parts brings an overview of the various microscopic reconstructive techniques based on optical sectioning. The main attention is devoted to conventional reconstruction methods and especially to that one employing the Fourier transform. The three-dimensional replicas of this special reconstructive frequency method are compared graphically and numerically with the three-dimensional replicas of the confocal method. Based on the comparative study it has been concluded that the quality of the conventional replicas of surfaces possessing textures of intermediate height irregularities is acceptable and almost comparable with the quality of confocal replicas. This study is relevant both for identifying a convenient technique that provides good qualities of three-dimensional replicas and for selecting the hardware whose price is affordable even for small research groups studying rougher surface textures. © Wiley Periodicals, Inc.

  9. Three-dimensional reconstruction in electron microscopy

    Energy Technology Data Exchange (ETDEWEB)

    Grano, D.A.

    1979-05-01

    The development and implementation of a versatile system of image processing programs for electron microscopy is described. Both high-dose, negatively stained specimens and low-dose, unstained specimens can be analyzed by this system. The theory behind image analysis in electron microscopy is described together with the practical aspects of computer processing of electron micrographs. The Fourier transform of cylindrically symmetric objects is studied in some detail. The range of structural deductions that may be made from the Fourier transforms of projections of such objects is discussed. The methods of 2-D image filtering are applied to high-dose images of negatively stained gap junction membranes and to frozen, hydrated, low-dose images of the hexagonally packed protein component of Spirillum serpens cell wall. The computer processed Spirillum specimen reveals the presence of Y-linkers similar to those seen in negatively stained preparations. Computer processing of the gap junction images makes the presence of a central staining pit more obvious. The techniques of 3-D helical reconstruction are applied to high-dose images of negatively stained T4 bacteriophage tails, to demonstrate the successful transfer of the IBM-based MRC helical reconstruction programs to our Control Data corporation computer system. Finally, the tubular structures found in preparations of Spirillum serpens cell wall are analyzed by Fourier methods.

  10. Eustachian tube three-dimensional reconstruction of secretory otitis media

    International Nuclear Information System (INIS)

    Yu Yafeng; Zhou Weirong; Bao Xueping; Li Min; Hu Zhenmin

    2006-01-01

    Objective: To study relationship between Eustachian tube and secretory otitis media and to explore the pathogeny of secretory otitis by three-dimensional reconstruction of Eustachian tube. Methods: Thirty cases of secretory otitis media (male 19, female 11) were selected randomly. Everyone was checked by otoscope and audiometry. Their bilateral Eustachian tubes were scanning by helix CT while making Valsalva's action. All images were passed on to work station to make three-dimensional reconstruction. Results: Four patients were found have Eustachian tube diseases, while most of patients' Eustachian tubes ventilated normally. Conclusions: Three-dimensional reconstruction of Eustachian tube can open out some pathogens of some secretory otitis medias. It will be helpful to diagnosis and therapy of secretory otitis media. (authors)

  11. Three-dimensional reconstruction of the pigeon inner ear

    NARCIS (Netherlands)

    Hofman, R.; Segenhout, J. M.; Wit, H. P.

    2009-01-01

    Three-dimensional reconstructions of the inner ear of the pigeon (Columba livia domestica), from two-dimensional images, obtained with (conventional) light microscopy or orthogonal-plane fluorescence optical sectioning (OPFOS), are presented. The results are compared with available information on

  12. Three-dimensional reconstruction of functional brain images

    International Nuclear Information System (INIS)

    Inoue, Masato; Shoji, Kazuhiko; Kojima, Hisayoshi; Hirano, Shigeru; Naito, Yasushi; Honjo, Iwao

    1999-01-01

    We consider PET (positron emission tomography) measurement with SPM (Statistical Parametric Mapping) analysis to be one of the most useful methods to identify activated areas of the brain involved in language processing. SPM is an effective analytical method that detects markedly activated areas over the whole brain. However, with the conventional presentations of these functional brain images, such as horizontal slices, three directional projection, or brain surface coloring, makes understanding and interpreting the positional relationships among various brain areas difficult. Therefore, we developed three-dimensionally reconstructed images from these functional brain images to improve the interpretation. The subjects were 12 normal volunteers. The following three types of images were constructed: routine images by SPM, three-dimensional static images, and three-dimensional dynamic images, after PET images were analyzed by SPM during daily dialog listening. The creation of images of both the three-dimensional static and dynamic types employed the volume rendering method by VTK (The Visualization Toolkit). Since the functional brain images did not include original brain images, we synthesized SPM and MRI brain images by self-made C++ programs. The three-dimensional dynamic images were made by sequencing static images with available software. Images of both the three-dimensional static and dynamic types were processed by a personal computer system. Our newly created images showed clearer positional relationships among activated brain areas compared to the conventional method. To date, functional brain images have been employed in fields such as neurology or neurosurgery, however, these images may be useful even in the field of otorhinolaryngology, to assess hearing and speech. Exact three-dimensional images based on functional brain images are important for exact and intuitive interpretation, and may lead to new developments in brain science. Currently, the surface

  13. Three-dimensional reconstruction of the biliary tract using spiral computed tomography. Three-dimensional cholangiography

    International Nuclear Information System (INIS)

    Gon, Masanori; Ogura, Norihiro; Uetsuji, Shouji; Ueyama, Yasuo

    1995-01-01

    In this study, 310 patients with benign biliary diseases, 20 with gallbladder cancer, and 8 with biliary tract carcinoma underwent spiral CT (SCT) scanning at cholangiography. Depiction rate of the shape of the conjunction site of the gallbladder and biliary tract was 27.5% by conventional intravenous cholangiography (DIC), 92.5% by ERC, and 90.0% by DIC-SCT. Abnormal cystic duct course was admitted in 14.1%. Multiplanar reconstruction by DIC-SCT enabled identification of the common bile duct and intrahepatic bile duct stone. Three-dimensional reconstruction of DIC-SCT was effective in evaluating obstruction of the anastomosis or passing condition of after hepatico-jejunostomy. Two-dimensional SCT images through PTCD tube enabled degree of hepatic invasion in bile duct cancer, and three-dimensional images were useful in grasping the morphology of the bile duct branches near the obstruction site. DIC-SCT is therefore considered a useful procedure as non-invasive examination of bile duct lesions. (S.Y.)

  14. Computational methods for three-dimensional microscopy reconstruction

    CERN Document Server

    Frank, Joachim

    2014-01-01

    Approaches to the recovery of three-dimensional information on a biological object, which are often formulated or implemented initially in an intuitive way, are concisely described here based on physical models of the object and the image-formation process. Both three-dimensional electron microscopy and X-ray tomography can be captured in the same mathematical framework, leading to closely-related computational approaches, but the methodologies differ in detail and hence pose different challenges. The editors of this volume, Gabor T. Herman and Joachim Frank, are experts in the respective methodologies and present research at the forefront of biological imaging and structural biology.   Computational Methods for Three-Dimensional Microscopy Reconstruction will serve as a useful resource for scholars interested in the development of computational methods for structural biology and cell biology, particularly in the area of 3D imaging and modeling.

  15. Conoscopic holography: toward three-dimensional reconstructions of opaque objects.

    Science.gov (United States)

    Mugnier, L M

    1995-03-10

    Conoscopic holography is an interferometric technique that permits the recording of three-dimensional objects. A two-step scheme is presented to recover an opaque object's shape from its conoscopic hologram, consisting of a reconstruction algorithm to give a first estimate of the shape and an iterative restoration procedure that uses the object's support information to make the reconstruction more robust. The existence, uniqueness, and stability of the solution, as well as the convergence of the restoration algorithm, are studied. A preliminary experimental result is presented.

  16. Three-dimensional temporal reconstruction and analysis of plume images

    Science.gov (United States)

    Dhawan, Atam P.; Disimile, Peter J.; Peck, Charles, III

    1992-01-01

    An experiment with two subsonic jets generating a cross-flow was conducted as part of a study of the structural features of temporal reconstruction of plume images. The flow field structure was made visible using a direct injection flow visualization technique. It is shown that image analysis and temporal three-dimensional visualization can provide new information on the vortical structural dynamics of multiple jets in a cross-flow. It is expected that future developments in image analysis, quantification and interpretation, and flow visualization of rocket engine plume images may provide a tool for correlating the engine diagnostic features by interpreting the evolution of the structures in the plume.

  17. Computationally efficient approach to three-dimensional point cloud reconstruction from video image sequences

    Science.gov (United States)

    Chang, Chih-Hsiang; Kehtarnavaz, Nasser

    2014-05-01

    This paper presents a computationally efficient solution to three-dimensional point cloud reconstruction from video image sequences that are captured by a hand-held camera. Our solution starts with a frame selection step to remove frames that cause physically nonrealizable reconstruction outcomes. Then, a computationally efficient approach for obtaining the absolute camera pose is introduced based on pairwise relative camera poses. This is followed by a computationally efficient rotation registration to update the absolute camera pose. The reconstruction results obtained based on actual video sequences indicate lower computation times and lower reprojection errors of the introduced approach compared to the conventional approach.

  18. Three-Dimensional Reconstruction Optical System Using Shadows Triangulation

    Science.gov (United States)

    Barba, J. Leiner; Vargas, Q. Lorena; Torres, M. Cesar; Mattos, V. Lorenzo

    2008-04-01

    In this work is developed a three-dimensional reconstruction system using the Shades3D tool of the Matlab® Programming Language and materials of low cost, such as webcam camera, a stick, a weak structured lighting system composed by a desk lamp, and observation plane in which the object is located. The reconstruction is obtained through a triangulation process that is executed after acquiring a sequence of images of the scene with a shadow projected on the object; additionally an image filtering process is done for obtaining only the part of the scene that will be reconstructed. Previously, it is necessary to develop a calibration process for determining the internal camera geometric and optical characteristics (intrinsic parameters), and the 3D position and orientation of the camera frame relative to a certain world coordinate system (extrinsic parameters). The lamp and the stick are used to produce a shadow which scans the object; in this technique, it is not necessary to know the position of the light source, instead the triangulation is obtained using shadow plane produced by intersection between the stick and the illumination pattern. The webcam camera captures all images with the shadow scanning the object, and Shades3D tool processes all information taking into account captured images and calibration parameters. Likewise, this technique is evaluated in the reconstruction of parts of the human body and its application in the detection of external abnormalities and elaboration of prosthesis or implant.

  19. Accuracy and reliability of three-dimensional surface reconstruction measurement

    International Nuclear Information System (INIS)

    Mizukami, Chikashi; Yamamoto, Etsuo; Ohmura, Masaki; Oiki, Hiroyuki; Tsuji, Jun; Muneta, Yuki; Tanabe, Makito; Hakuba, Nobuhiro; Azemoto, Syougo.

    1993-01-01

    We are using a new three-dimensional (3-D) surface reconstruction system to measure the temporal bones. This system offers the advantage of observation of the external aperture of the vestibular aqueduct and the porus acusticus internus in living subjects. However, its accuracy has not been confirmed. To investigate the accuracy of this new system, we measured the length of an in situ ceramic ossicular replacement prosthesis (CORP) of known length of 6.0 mm using 3-D surface reconstruction, conventional plain X-ray and polytomography. The CORP was scanned in the axial, sagittal and oblique directions. The mean measured length obtained with the 3-D surface reconstruction images was 5.94±0.21 on vertical scans, 5.91±0.27 on horizontal scans, and 6.01±0.25 on oblique scans. There were no significant differences among the measured lengths obtained in the three directions. Therefore, this 3-D surface reconstruction measurement system is considered to be reliable. Conversely, the mean measured length obtained by plain X-ray was 7.98±0.20, and by polytomography it was 7.94±0.23. These conventional methods have the inherent disadvantage of magnification of size which consequently requires correction. (author)

  20. Three-dimensional digital reconstruction of skin epidermis and dermis.

    Science.gov (United States)

    Liu, P; Zhu, J-Y; Tang, B; Hu, Z-C

    2018-05-01

    This study describes how three-dimensional (3D) human skin tissue is reconstructed, and provides digital anatomical data for the physiological structure of human skin tissue based on large-scale thin serial sections. Human skin samples embedded in paraffin were cut serially into thin sections and then stained with hematoxylin-eosin. Images of serial sections obtained from lighting microscopy were scanned and aligned by the scale-invariant feature transform algorithm. 3D reconstruction of the skin tissue was generated using Mimics software. Fibre content, porosity, average pore diameter and specific surface area of dermis were analysed using the ImageJ analysis system. The root mean square error and mutual information based on the scale-invariant feature transform algorithm registration were significantly greater than those based on the manual registration. Fibre distribution gradually decreased from top to bottom; while porosity showed an opposite trend with irregular average pore diameter distribution. A specific surface area of the dermis showed a 'V' shape trend. Our data suggested that 3D reconstruction of human skin tissue based on large-scale serial sections could be a valuable tool for providing a highly accurate histological structure for analysis of skin tissue. Moreover, this technology could be utilized to produce tissue-engineered skin via a 3D bioprinter in the future. © 2017 The Authors Journal of Microscopy © 2017 Royal Microscopical Society.

  1. Three-dimensional total variation norm for SPECT reconstruction

    International Nuclear Information System (INIS)

    Persson, Mikael; Bone, Dianna; Elmqvist, H.

    2001-01-01

    The total variation (TV) norm has been described in literature as a method for reducing noise in two-dimensional (2D) images. At the same time, the TV-norm is very good at recovering edges in images, without introducing ringing or edge artefacts. It has also been proposed as a 2D regularisation function in Bayesian reconstruction, implemented in an expectation maximisation (EM) algorithm, and called TV-EM. The TV-EM was developed for 2D SPECT imaging, and the algorithm is capable of smoothing noise while maintaining edges without introducing artefacts. We have extended the TV-norm to take into account the third spatial dimension, and developed an iterative EM algorithm based on the three-dimensional (3D) TV-norm, which we call TV3D-EM. This takes into account the correlation between transaxial sections in SPECT, due to system resolution. We have compared the 2D and 3D algorithms using reconstructed images from simulated projection data. Phantoms used were a homogeneous sphere, and a 3D head phantom based on the Shepp-Logan phantom. The TV3D-EM algorithm yielded somewhat lower noise levels than TV-EM. The noise in the TV3D-EM had similar correlation in transaxial and longitudinal sections, which was not the case for TV-EM, or any 2D reconstruction method. In particular, longitudinal sections from TV3D-EM were perceived as less noisy when compared to TV-EM. The use of 3D reconstruction should also be advantageous if compensation for distant dependent collimator blurring is incorporated in the iterative algorithm

  2. Positron Emission Tomography with Three-Dimensional Reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Erlandsson, K.

    1996-10-01

    The development of two different low-cost scanners for positron emission tomography (PET) based on 3D acquisition are presented. The first scanner consists of two rotating scintillation cameras, and produces quantitative images, which have shown to be clinically useful. The second one is a system with two opposed sets of detectors, based on the limited angle tomography principle, dedicated for mammographic studies. The development of low-cost PET scanners can increase the clinical impact of PET, which is an expensive modality, only available at a few centres world-wide and mainly used as a research tool. A 3D reconstruction method was developed that utilizes all the available data. The size of the data-sets is considerably reduced, using the single-slice rebinning approximation. The 3D reconstruction is divided into 1D axial deconvolution and 2D transaxial reconstruction, which makes it relatively fast. This method was developed for the rotating scanner, but was also implemented for multi-ring scanners with and without inter plane septa. An iterative 3D reconstruction method was developed for the limited angle scanner, based on the new concept of `mobile pixels`, which reduces the finite pixel errors and leads to an improved signal to noise ratio. 100 refs.

  3. Three-dimensional reconstruction of the rat nephron

    DEFF Research Database (Denmark)

    Christensen, Erik Ilsø; Grann, Birgitte; Kristoffersen, Inger B.

    2014-01-01

    This study gives a three-dimensional (3D) structural analysis of rat nephrons and their connections to collecting ducts. Approximately 4,500 2.5-μm-thick serial sections from the renal surface to the papillary tip were obtained from each of 3 kidneys of Wistar rats. Digital images were recorded...

  4. Three dimensional reconstruction of tomographic images of the retina

    International Nuclear Information System (INIS)

    Glittenberg, C.; Zeiler, F.; Falkner, C.; Binder, S.; Povazay, B.; Hermann, B.; Drexler, W.

    2007-01-01

    The development of a new display system for the three-dimensional visualization of tomographic images in ophthalmology. Specifically, a system that can use stacks of B-mode scans from an ultrahigh resolution optical tomography examination to vividly display retinal specimens as three-dimensional objects. Several subroutines were programmed in the rendering and raytracing program Cinema 4D XL 9.102 Studio Bundle (Maxon Computer Inc., Friedrichsburg, Germany), which could process stacks of tomographic scans into three-dimensional objects. Ultrahigh resolution optical coherence tomography examinations were performed on patients with various retinal pathologies and post processed with the subroutines that had been designed. All ultrahigh resolution optical coherence tomographies were performed with a titanium: sapphire based ultra broad bandwidth (160 nm) femtosecond laser system (INTEGRAL, Femtolasers Productions GmbH. Vienna Austria) with an axial resolution of 3 μm. A new three dimensional display system for tomographic images in ophthalmology was developed, which allows a highly vivid display of physiological and pathological structures of the retina. The system also distinguishes itself through its high interactivity and adaptability. This new display system allows the visualization of physiological and pathological structures of the retina in a new way, which will give us new insight into their morphology and development. (author) [de

  5. Three-dimensional reconstruction of the otosclerotic focus

    DEFF Research Database (Denmark)

    Bloch, Sune Land; Sørensen, Mads Sølvsten

    2010-01-01

    The location and three-dimensional (3D) shapes of the otosclerotic foci suggest a general centripetal distribution of otosclerotic bone remodeling around the inner ear space, whereas the normal bone remodeling is distributed centrifugally. The existence of an inverse spatial relation between norm...... and otosclerotic bone remodeling suggests that inner ear mechanisms in control of bone remodeling may have a pathogenetic role in otosclerosis....

  6. A vein display system based on three-dimensional reconstruction

    Science.gov (United States)

    Wang, Danting; Zhou, Ya; Hu, Xiaoming; Wu, Zhaoguo; Dai, Xiaobin

    2014-10-01

    Venipuncture is the most common way of all invasive medical procedures. A vein display system can make vein access easier by capturing the vein information and projecting a visible vein image onto the skin, which is correctly aligned with the subject's vein. The existing systems achieve correct alignment by the design of coaxial structure. Such a structure causes complex optical and mechanical design and big physical dimensions inevitably. In this paper, we design a stereovision- based vein display system, which consists of a pair of cameras, a DLP projector and a near-infrared light source. We recover the three-dimensional venous structure from image pair acquired from two near-infrared cameras. Then the vein image from the viewpoint of projector is generated from the three-dimensional venous structure and projected exactly onto skin by the DLP projector. Since the stereo cameras get the depth information of vessels, the system can make sure the alignment of projected veins and the real veins without a coaxial structure. The experiment results prove that we propose a feasible solution for a portable and low-cost vein display device.

  7. Automated three-dimensional reconstruction of the Caenorhabditis elegans germline.

    Science.gov (United States)

    Gopal, Sandeep; Boag, Peter; Pocock, Roger

    2017-12-15

    The Caenorhabditis elegans germline is widely used as a model to study stem cell development, chromosome dynamics and apoptosis. Major readouts of germline phenotypes such as cell counting and protein expression profiling are routinely analyzed manually and in a two-dimensional manner. The major disadvantages of the existing approaches are 1) they are time-consuming and laborious and 2) there is an inability to study the effects of genetic mutations in three dimensions. Here, we demonstrate a rapid, automated method for analyzing the three-dimensional distribution of proteins, germline nuclei and cytoskeletal structures in the C. elegans germline. Using this method, we have revealed previously unappreciated germline organization and cytoskeletal structures that will have a major impact on the characterization of germline phenotypes. To conclude, our new method dramatically enhances the efficiency and resolution of C. elegans germline analysis and may be applied to other cellular structures. Copyright © 2017 Elsevier Inc. All rights reserved.

  8. [Research progress on three-dimensional reconstruction and visualization of peripheral nerve].

    Science.gov (United States)

    Ren, Gaohong; Pei, Guoxian

    2009-02-01

    To review the research progress on the three-dimensional (3D) reconstruction and visualization of peripheral nerve. Literature about the research on the 3D reconstruction and visualization of peripheral nerve both at home and abroad were extensively reviewed and thoroughly analyzed. The application of 3D reconstruction and visualization technology was capable of not only reappearing the 3D outer contour and spatial adjacent relationship of peripheral nerve veritable but also displaying, rotating, zooming, dividing and real-time measuring their 3D internal structure and the delicate pathways in any direction either separately or totally. Preliminary achievements were achieved in terms of brachial plexus, lumbosacral plexus, the functional cluster of nerve trunk, intramuscular nerve distribution pattern, peripheral nerve regeneration and the 3D reconstruction and visualization research of complex tissue including peripheral nerve. However, the research on the visualization of peripheral nerve was still in the initial stage since such problems as recognition, segmentation, registration and fusion of the peripheral nerve information were not resolved yet. Researching 3D reconstruction and visualization of the peripheral nerve is of great value for updating the diagnosis and treatment principle of peripheral nerve injury, improving its diagnosis and treatment method and launching a new way for the studying and teaching, which may be a new growing point for the peripheral nerve surgery.

  9. Grain boundary character distribution derived from three-dimensional microstructure reconstruction

    International Nuclear Information System (INIS)

    Pirgazi, H; Kestens, L A I

    2015-01-01

    Manual serial sectioning which includes consecutive steps of sample preparation and Electron Back Scattering Diffraction (EBSD) measurement was employed to extract the twodimensional (2D) sections of a pure nickel sample and to reconstruct the three-dimensional (3D) microstructure. A general alignment algorithm based on the minimization of misorientation between two adjacent sections has been developed to accurately align the sections. By employing this alignment algorithm, any in-plane (translational) and rotational misalignment as well as the planparallelity can be corrected. Surface triangulation technique was used to reconstruct the grain boundary surfaces. The Grain Boundary Character Distribution (GBCD) was derived from reconstructed grain boundaries. The results show that a smoother grain boundary plane can be obtained after precise translational and rotational alignment and correction of planparallelity.The relative grain boundary energy was computed as a function of the five grain boundary parameters based on equilibrium at triple lines. The results show that the grain boundary planes carrying a Σ 3 type misorientation are dominantly parallel to the {111} crystal plane, which indicates the presence of coherent twin boundaries. It was observed that coherent Σ 3 type boundaries exhibit the minimum relative grain boundary energy, which is approximately 57% smaller than the average of all Σ 3 boundaries, including also incoherent twin boundaries. (paper)

  10. Grain boundary character distribution derived from three-dimensional microstructure reconstruction

    Science.gov (United States)

    Pirgazi, H.; Kestens, L. A. I.

    2015-04-01

    Manual serial sectioning which includes consecutive steps of sample preparation and Electron Back Scattering Diffraction (EBSD) measurement was employed to extract the twodimensional (2D) sections of a pure nickel sample and to reconstruct the three-dimensional (3D) microstructure. A general alignment algorithm based on the minimization of misorientation between two adjacent sections has been developed to accurately align the sections. By employing this alignment algorithm, any in-plane (translational) and rotational misalignment as well as the planparallelity can be corrected. Surface triangulation technique was used to reconstruct the grain boundary surfaces. The Grain Boundary Character Distribution (GBCD) was derived from reconstructed grain boundaries. The results show that a smoother grain boundary plane can be obtained after precise translational and rotational alignment and correction of planparallelity. The relative grain boundary energy was computed as a function of the five grain boundary parameters based on equilibrium at triple lines. The results show that the grain boundary planes carrying a Σ3 type misorientation are dominantly parallel to the {111} crystal plane, which indicates the presence of coherent twin boundaries. It was observed that coherent Σ3 type boundaries exhibit the minimum relative grain boundary energy, which is approximately 57% smaller than the average of all Σ3 boundaries, including also incoherent twin boundaries.

  11. Reconstruction of Mammary Gland Structure Using Three-Dimensional Computer-Based Microscopy

    National Research Council Canada - National Science Library

    de

    2003-01-01

    During the administrative funding period of this grant we have developed a system that permits three-dimensional reconstruction of entire the entire murine ductal epithelium from physical tissue sections...

  12. Reconstruction of Mammary Gland Structure Using Three-Dimensional Computer-Based Microscopy

    National Research Council Canada - National Science Library

    De Solorzano, Carlos O

    2004-01-01

    During the administrative funding period of this grant we have developed a system that permits three-dimensional reconstruction of entire the entire murine ductal epithelium from physical tissue sections...

  13. Three-dimensional reconstruction from radiographs and electron micrographs: application of convolutions instead of Fourier transforms.

    Science.gov (United States)

    Ramachandran, G N; Lakshminarayanan, A V

    1971-09-01

    A new technique is proposed for the mathematical process of reconstruction of a three-dimensional object from its transmission shadowgraphs; it uses convolutions with functions defined in the real space of the object, without using Fourier transforms. The object is rotated about an axis at right angles to the direction of a parallel beam of radiation, and sections of it normal to the axis are reconstructed from data obtained by scanning the corresponding linear strips in the shadowgraphs at different angular settings. Since the formulae in the convolution method involve only summations over one variable at a time, while a two-dimensional reconstruction with the Fourier transform technique requires double summations, the convolution method is much faster (typically by a factor of 30); the relative increase in speed is larger where greater resolution is required. Tests of the convolution method with computer-simulated shadowgraphs show that it is also more accurate than the Fourier transform method. It has good potentialities for application in electron microscopy and x-radiography. A new method of reconstructing helical structures by this technique is also suggested.

  14. Three-dimensional reconstruction of entire vertebral bodies

    DEFF Research Database (Denmark)

    Odgaard, A.; Andersen, K.; Ullerup, R.

    1994-01-01

    conducting experimental and clinical studies related to cancellous bone architecture and, ultimately, to cancellous bone quality. A set of new and unbiased methods for quantification of cancellous bone has been a stimulus for the development of the technique, as the quantification methods rely on 3-D...... hour, which means that an average vertebral body can be reconstructed in about 2 h. Compared to previous implementations of the general principle of serial sectioning, this is a significant improvement both in resolution and in time efficiency....

  15. Three-dimensional track reconstruction for directional Dark Matter detection

    International Nuclear Information System (INIS)

    Billard, J.; Mayet, F.; Santos, D.

    2012-01-01

    Directional detection of Dark Matter is a promising search strategy. However, to perform such detection, a given set of parameters has to be retrieved from the recoiling tracks: direction, sense and position in the detector volume. In order to optimize the track reconstruction and to fully exploit the data of forthcoming directional detectors, we present a likelihood method dedicated to 3D track reconstruction. This new analysis method is applied to the MIMAC detector. It requires a full simulation of track measurements in order to compare real tracks to simulated ones. We conclude that a good spatial resolution can be achieved, i.e. sub-mm in the anode plane and cm along the drift axis. This opens the possibility to perform a fiducialization of directional detectors. The angular resolution is shown to range between 20° to 80°, depending on the recoil energy, which is however enough to achieve a high significance discovery of Dark Matter. On the contrary, we show that sense recognition capability of directional detectors depends strongly on the recoil energy and the drift distance, with small efficiency values (50%–70%). We suggest not to consider this information either for exclusion or discovery of Dark Matter for recoils below 100 keV and then to focus on axial directional data

  16. Three-dimensional Reconstruction of Block Shape Irregularity and its Effects on Block Impacts Using an Energy-Based Approach

    Science.gov (United States)

    Zhang, Yulong; Liu, Zaobao; Shi, Chong; Shao, Jianfu

    2018-04-01

    This study is devoted to three-dimensional modeling of small falling rocks in block impact analysis in energy view using the particle flow method. The restitution coefficient of rockfall collision is introduced from the energy consumption mechanism to describe rockfall-impacting properties. Three-dimensional reconstruction of falling block is conducted with the help of spherical harmonic functions that have satisfactory mathematical properties such as orthogonality and rotation invariance. Numerical modeling of the block impact to the bedrock is analyzed with both the sphere-simplified model and the 3D reconstructed model. Comparisons of the obtained results suggest that the 3D reconstructed model is advantageous in considering the combination effects of rockfall velocity and rotations during colliding process. Verification of the modeling is carried out with the results obtained from other experiments. In addition, the effects of rockfall morphology, surface characteristics, velocity, and volume, colliding damping and relative angle are investigated. A three-dimensional reconstruction modulus of falling blocks is to be developed and incorporated into the rockfall simulation tools in order to extend the modeling results at block scale to slope scale.

  17. Reconstruction of pseudo three-dimensional dental image from dental panoramic radiograph and tooth surface shape

    International Nuclear Information System (INIS)

    Imura, Masataka; Kuroda, Yoshihiro; Oshiro, Osamu; Kuroda, Tomohiro; Kagiyama, Yoshiyuki; Yagi, Masakazu; Takada, Kenji; Azuma, Hiroko

    2010-01-01

    Three-dimensional volume data set is useful for diagnosis in dental treatments. However, to obtain three-dimensional images of a dental arch in general dental clinics is difficult. In this paper, we propose a method to reconstruct pseudo three-dimensional dental images from a dental panoramic radiograph and a tooth surface shape which can be obtained from three dimensional shape measurement of a dental impression. The proposed method finds an appropriate curved surface on which the dental panoramic radiograph is mapped by comparing a virtual panoramic image made from a tooth surface shape to a real panoramic radiograph. The developed pseudo three-dimensional dental images give clear impression of patient's dental condition. (author)

  18. Three-dimensional rotational angiography in children with an aortic coarctation

    NARCIS (Netherlands)

    Starmans, N L P; Krings, G J; Molenschot, M M C; van der Stelt, Femke; Breur, J M P J

    2016-01-01

    BACKGROUND: Children with aortic coarctations (CoA) are increasingly percutaneously treated. Good visualisation of the CoA is mandatory and can be obtained with three-dimensional rotational angiography (3DRA). This study aims to compare the diagnostic and therapeutic additional value of 3DRA with

  19. Three-diemensional materials science: An intersection of three-dimensional reconstructions and simulations

    DEFF Research Database (Denmark)

    Thornton, Katsuyo; Poulsen, Henning Friis

    2008-01-01

    The recent development of experimental techniques that rapidly reconstruct the three-dimensional microstructures of solids has given rise to new possibilities for developing a deeper understanding of the evolution of microstructures and the effects of microstructures on materials properties. Comb...... an overview of this emerging field of materials science, as well as brief descriptions of selected methods and their applicability.......The recent development of experimental techniques that rapidly reconstruct the three-dimensional microstructures of solids has given rise to new possibilities for developing a deeper understanding of the evolution of microstructures and the effects of microstructures on materials properties....... Combined with three-dimensional (3D) simulations and analyses that are capable of handling the complexity of these microstructures, 3D reconstruction, or tomography, has become a powerful tool that provides clear insights into materials processing and properties. This introductory article provides...

  20. Three-dimensional reconstruction and surface extraction of lower limbs as visualization methodologies of ecchymosis.

    Science.gov (United States)

    de Lima Thomaz, Ricardo; Patrocinio, Ana Claudia; Barbosa Soares, Alcimar

    2014-01-01

    This paper presents a computational system for three-dimensional reconstruction and surface extraction of the human lower limb as a new methodology of visualizing images of multifaceted ecchymosis on the lower limbs. Through standardization of image acquisition by a mechanical system, an algorithm was developed for three-dimensional and surface reconstruction based on the extraction of depth from silhouettes. In order to validate this work, a three-dimensional model of the human lower limb was used inside a virtual environment. At this environment the mechanical procedure of image acquisition was simulated, resulting in 100 images which was later submitted to all algorithms developed. It was observed that the systems for three-dimensional reconstruction and surface extraction of the object were able to generate a new visualization method of the lesion. The results allow us to conclude that the developed systems provided adequate three-dimensional and two-dimensional visualization of the surface of the simulated model. Despite the lack of experiments with real ecchymoses, the systems developed in this work show great potential to be included in the standard methods for the visualization of ecchymoses.

  1. Three-dimensional organization of vestibular related eye movements to rotational motion in pigeons

    Science.gov (United States)

    Dickman, J. D.; Beyer, M.; Hess, B. J.

    2000-01-01

    During rotational motions, compensatory eye movement adjustments must continually occur in order to maintain objects of visual interest as stable images on the retina. In the present study, the three-dimensional organization of the vestibulo-ocular reflex in pigeons was quantitatively examined. Rotations about different head axes produced horizontal, vertical, and torsional eye movements, whose component magnitude was dependent upon the cosine of the stimulus axis relative to the animal's visual axis. Thus, the three-dimensional organization of the VOR in pigeons appears to be compensatory for any direction of head rotation. Frequency responses of the horizontal, vertical, and torsional slow phase components exhibited high pass filter properties with dominant time constants of approximately 3 s.

  2. Three-dimensional reconstruction of port wine stain vascular anatomy from serial histological sections

    NARCIS (Netherlands)

    Smithies, D. J.; van Gemert, M. J.; Hansen, M. K.; Milner, T. E.; Nelson, J. S.

    1997-01-01

    Port wine stains (PWSs) treated with a flashlamp-pumped pulsed dye laser show a variability in clinical response that is incompletely understood. To identify any vascular structure that might adversely affect treatment response, we obtained a three-dimensional reconstruction of the vascular anatomy

  3. Three-dimensional reconstruction of intracoronary ultrasound images. Rationale, approaches, problems, and directions

    OpenAIRE

    Roelandt, Jos; Mario, Carlo; Pandian, Natesa; Wenguang, L.; Keane, David; Slager, Cornelis; Feyter, Pim; Serruys, Patrick

    1994-01-01

    textabstractAlthough intracoronary ultrasonography allows detailed tomographic imaging of the arterial wall, it fails to provide data on the structural architecture and longitudinal extent of arterial disease. This information is essential for decision making during therapeutic interventions. Three-dimensional reconstruction techniques offer visualization of the complex longitudinal architecture of atherosclerotic plaques in composite display. Progress in computer hardware and software techno...

  4. Vascular fluorescence casting and imaging cryomicrotomy for computerized three-dimensional renal arterial reconstruction

    NARCIS (Netherlands)

    Lagerveld, Brunolf W.; ter Wee, Rene D.; de La Rosette, Jean J. M. C. H.; Spaan, Jos A. E.; Wijkstra, Hessel

    2007-01-01

    OBJECTIVES To assess the combined use of a casting technique, cryomicrotomy imaging, and three-dimensional (3D) computer analysis as a method for visualizing and reconstructing the arterial vascular tree in a porcine renal model. MATERIAL AND METHODS The arterial branches of two porcine kidneys were

  5. Development of a technique for three-dimensional image reconstruction from emission computed tomograms (ECT)

    International Nuclear Information System (INIS)

    Gerischer, R.

    1987-01-01

    The described technique for three-dimensional image reconstruction from ECT sections is based on a simple procedure, which can be carried out with the aid of any standard-type computer used in nuclear medicine and requires no sophisticated arithmetic approach. (TRV) [de

  6. Three-dimensional reconstructed magnetic resonance scans: Accuracy in identifying and defining knee meniscal tears

    OpenAIRE

    Kruger, Neil; McNally, Eugene; Al-Ali, Sami; Rout, Raj; Rees, Jonathan L; Price, Andrew J

    2016-01-01

    AIM To determine whether three-dimensional (3D) reconstruction from conventional magnetic resonance imaging (MRI) is able to accurately detect a meniscal tear, and define the configuration. METHODS Thirty-three patients? 3T MRI scan data were collected and sagittal uni-planar 3D reconstructions performed from the preoperative MRI. There were 24 meniscal tears in 24 patients, and nine controls. All patients had arthroscopic corroboration of MRI findings. Two independent observers prospectively...

  7. Placement of pedicle screws using three-dimensional fluoroscopy-based navigation in lumbar vertebrae with axial rotation

    Science.gov (United States)

    Lang, Zhao

    2010-01-01

    Despite potential advantages of three-dimensional fluoroscopy-based navigation, there still remain a lot of controversies about the indications of this technology, especially whether it is worthy of being used in placement of pedicle screws in lumbar spine. However, according to the inconsistent conclusions reported in the literature and our experiences, the traditional method relying on anatomical landmarks and fluoroscopic views to guide lumbar pedicle screw insertion is unable to meet the requirement of precise screw placement. Based on our observation, screw malposition seems to occur concomitant with vertebral axial rotation which is a ubiquitous phenomenon. Three-dimensional fluoroscopy-based navigation can provide the most valuable axial images in real-time, so it may be useful for placement of pedicle screws in lumbar spine. This study was intended to evaluate the effect of axial rotation of lumbar vertebrae on the accuracy of pedicle screw placement using the traditional method, as well as assess the value of three-dimensional fluoroscopy-based navigation in improving the accuracy. Sixteen lumbar simulation models at different degrees of axial rotation (0°, 5°, 10°, and 20°), with every four assigned the same degree, were equally divided into two groups (traditional method group and three-dimensional fluoroscopy-based navigation group). Random placement of pedicle screws was carried out, followed by CT scan postoperatively. Then the outer pedicle cortex contours were depicted from reconstructed sectional pedicle images using Photoshop. The accuracy of pedicle screw placement was evaluated by determining the interrelationship between screw trajectory and pedicle cortex (quality), and measuring the shortest distance from pedicle screw axis to outer cortex of the pedicle (quantity). Eighty pedicle screws were implanted, respectively, in each group. In traditional method group, statistical difference existed in the accuracy of pedicle screw placement at

  8. Mental rotation of letters, pictures, and three-dimensional objects in German dyslexic children.

    Science.gov (United States)

    Rüsseler, Jascha; Scholz, Janka; Jordan, Kirsten; Quaiser-Pohl, Claudia

    2005-12-01

    This study examines mental rotation ability in children with developmental dyslexia. Prior investigations have yielded equivocal results that might be due to differences in stimulus material and testing formats employed. Whereas some investigators found dyslexic readers to be impaired in mental rotation, others did not report any performance differences or even superior spatial performance for dyslexia. Here, we report a comparison of mental rotation for letters, three-dimensional figures sensu Shepard and Metzler, and colored pictures of animals or humans in second-grade German dyslexic readers. Findings indicate that dyslexic readers are impaired in mental rotation for all three kinds of stimuli. Effects of general intelligence were controlled. Furthermore, dyslexic children were deficient in other spatial abilities like identifying letters or forms among distracters. These results are discussed with respect to the hypotheses of a developmental dysfunction of the parietal cortex or a subtle anomaly in cerebellar function in dyslexic readers.

  9. Restoration of three-dimensional MR images degraded by rotational movements

    International Nuclear Information System (INIS)

    Wood, M.L.

    1990-01-01

    This paper describes a method to restore three-dimensional (3D) magnetic resonance (MR) images that have been degraded by rotational movements, such as head nodding by a restless patient. The technique for acquiring the 3D MR images includes additional MR signals, which provide one-dimensional (1D) and two-dimensional (2D) projections of anatomy. The 1D projections detect gross movements, and the 2D projections resolve displacements in one plane. The 2D projections are transformed from Cartesian coordinates to polar coordinates to identify rotation. A spatial transformation to reverse the rotation is applied to the imaging data after they have been Fourier transformed to resolve structures in the plane of rotation, but before the Fourier transform for the third direction

  10. DART: a robust algorithm for fast reconstruction of three-dimensional grain maps

    DEFF Research Database (Denmark)

    Batenburg, K.J.; Sijbers, J.; Poulsen, Henning Friis

    2010-01-01

    A novel algorithm is introduced for fast and nondestructive reconstruction of grain maps from X-ray diffraction data. The discrete algebraic reconstruction technique (DART) takes advantage of the intrinsic discrete nature of grain maps, while being based on iterative algebraic methods known from...... classical tomography. To test the properties of the algorithm, three-dimensional X-ray diffraction microscopy data are simulated and reconstructed with DART as well as by a conventional iterative technique, namely SIRT (simultaneous iterative reconstruction technique). For 100 × 100 pixel reconstructions...... and moderate noise levels, DART is shown to generate essentially perfect two-dimensional grain maps for as few as three projections per grain with running times on a PC in the range of less than a second. This is seen as opening up the possibility for fast reconstructions in connection with in situ studies....

  11. Three-Dimensional Anatomic Evaluation of the Anterior Cruciate Ligament for Planning Reconstruction

    Directory of Open Access Journals (Sweden)

    Yuichi Hoshino

    2012-01-01

    Full Text Available Anatomic study related to the anterior cruciate ligament (ACL reconstruction surgery has been developed in accordance with the progress of imaging technology. Advances in imaging techniques, especially the move from two-dimensional (2D to three-dimensional (3D image analysis, substantially contribute to anatomic understanding and its application to advanced ACL reconstruction surgery. This paper introduces previous research about image analysis of the ACL anatomy and its application to ACL reconstruction surgery. Crucial bony landmarks for the accurate placement of the ACL graft can be identified by 3D imaging technique. Additionally, 3D-CT analysis of the ACL insertion site anatomy provides better and more consistent evaluation than conventional “clock-face” reference and roentgenologic quadrant method. Since the human anatomy has a complex three-dimensional structure, further anatomic research using three-dimensional imaging analysis and its clinical application by navigation system or other technologies is warranted for the improvement of the ACL reconstruction.

  12. A memory efficient method for fully three-dimensional object reconstruction with HAADF STEM

    International Nuclear Information System (INIS)

    Van den Broek, W.; Rosenauer, A.; Van Aert, S.; Sijbers, J.; Van Dyck, D.

    2014-01-01

    The conventional approach to object reconstruction through electron tomography is to reduce the three-dimensional problem to a series of independent two-dimensional slice-by-slice reconstructions. However, at atomic resolution the image of a single atom extends over many such slices and incorporating this image as prior knowledge in tomography or depth sectioning therefore requires a fully three-dimensional treatment. Unfortunately, the size of the three-dimensional projection operator scales highly unfavorably with object size and readily exceeds the available computer memory. In this paper, it is shown that for incoherent image formation the memory requirement can be reduced to the fundamental lower limit of the object size, both for tomography and depth sectioning. Furthermore, it is shown through multislice calculations that high angle annular dark field scanning transmission electron microscopy can be sufficiently incoherent for the reconstruction of single element nanocrystals, but that dynamical diffraction effects can cause classification problems if more than one element is present. - Highlights: • The full 3D approach to atomic resolution object retrieval has high memory load. • For incoherent imaging the projection process is a matrix–vector product. • Carrying out this product implicitly as Fourier transforms reduces memory load. • Reconstructions are demonstrated from HAADF STEM and depth sectioning simulations

  13. Computation of three-dimensional, rotational flow through turbomachinery blade rows for improved aerodynamic design studies

    Science.gov (United States)

    Subramanian, S. V.; Bozzola, R.; Povinelli, L. A.

    1986-01-01

    The performance of a three dimensional computer code developed for predicting the flowfield in stationary and rotating turbomachinery blade rows is described in this study. The four stage Runge-Kutta numerical integration scheme is used for solving the governing flow equations and yields solution to the full, three dimensional, unsteady Euler equations in cylindrical coordinates. This method is fully explicit and uses the finite volume, time marching procedure. In order to demonstrate the accuracy and efficiency of the code, steady solutions were obtained for several cascade geometries under widely varying flow conditions. Computed flowfield results are presented for a fully subsonic turbine stator and a low aspect ratio, transonic compressor rotor blade under maximum flow and peak efficiency design conditions. Comparisons with Laser Anemometer measurements and other numerical predictions are also provided to illustrate that the present method predicts important flow features with good accuracy and can be used for cost effective aerodynamic design studies.

  14. Research on a Rotating Machinery Fault Prognosis Method Using Three-Dimensional Spatial Representations

    Directory of Open Access Journals (Sweden)

    Xiaoni Dong

    2016-01-01

    Full Text Available Process models and parameters are two critical steps for fault prognosis in the operation of rotating machinery. Due to the requirement for a short and rapid response, it is important to study robust sensor data representation schemes. However, the conventional holospectrum defined by one-dimensional or two-dimensional methods does not sufficiently present this information in both the frequency and time domains. To supply a complete holospectrum model, a new three-dimensional spatial representation method is proposed. This method integrates improved three-dimensional (3D holospectra and 3D filtered orbits, leading to the integration of radial and axial vibration features in one bearing section. The results from simulation and experimental analysis on a complex compressor show that the proposed method can present the real operational status and clearly reveal early faults, thus demonstrating great potential for condition-based maintenance prediction in industrial machinery.

  15. Diagnostic accuracy of three-dimensional CT reconstruction and cephalometry for lateral skull base tumors.

    Science.gov (United States)

    Xie, X Z; Huo, X K

    2015-10-01

    To explore the diagnostic accuracy of three-dimensional CT reconstruction and cephalometry in lateral skull base tumors. Fifty-eight patients with lateral skull base tumors were randomly divided into control group (n = 29, examined with conventional diagnostic technique) or study group (n = 29, examined with three-dimensional CT reconstruction and cephalometry). The diagnostic accuracy, tumor distribution and image characteristics were compared between both patient groups. In control group, preoperative tumor diagnosis was consistent with intraoperative diagnosis in 20 patients, similar in 7 patients and discrepant in 2 patients. In study group, there were 24 consistent, 4 similar, and 1 discrepant diagnoses (p cephalometry provides accurate diagnosis of lateral skull base tumors, which is helpful for subsequent surgical treatment.

  16. Topological charges of three-dimensional Dirac semimetals with rotation symmetry

    Science.gov (United States)

    Yang, Bohm-Jung; Morimoto, Takahiro; Furusaki, Akira

    2015-10-01

    In general, the stability of a band crossing point indicates the presence of a quantized topological number associated with it. In particular, the recent discovery of three-dimensional Dirac semimetals in Na3Bi and Cd3As2 demonstrates that a Dirac point with fourfold degeneracy can be stable as long as certain crystalline symmetries are supplemented in addition to the time-reversal and inversion symmetries. However, the topological charges associated with Na3Bi and Cd3As2 are not clarified yet. In this work, we identify the topological charge of three-dimensional Dirac points. It is found that although the simultaneous presence of the time-reversal and inversion symmetries forces the net chiral charge to vanish, a Dirac point can carry another quantized topological charge when an additional rotation symmetry is considered. Two different classes of Dirac semimetals are identified depending on the nature of the rotation symmetries. First, the conventional symmorphic rotational symmetry which commutes with the inversion gives rise to the class I Dirac semimetals having a pair of Dirac points on the rotation axes. Since the topological charges of each pair of Dirac points have the opposite sign, a pair creation or a pair annihilation is required to change the number of Dirac points in the momentum space. On the other hand, the class II Dirac semimetals possess a single isolated Dirac point at a time-reversal invariant momentum, which is protected by a screw rotation. The nonsymmorphic nature of screw rotations allows the anticommutation relation between the rotation and inversion symmetries, which enables to circumvent the doubling of the number of Dirac points and create a single Dirac point at the Brillouin zone boundary.

  17. Verifying Three-Dimensional Skull Model Reconstruction Using Cranial Index of Symmetry

    OpenAIRE

    Kung, Woon-Man; Chen, Shuo-Tsung; Lin, Chung-Hsiang; Lu, Yu-Mei; Chen, Tzu-Hsuan; Lin, Muh-Shi

    2013-01-01

    BACKGROUND: Difficulty exists in scalp adaptation for cranioplasty with customized computer-assisted design/manufacturing (CAD/CAM) implant in situations of excessive wound tension and sub-cranioplasty dead space. To solve this clinical problem, the CAD/CAM technique should include algorithms to reconstruct a depressed contour to cover the skull defect. Satisfactory CAM-derived alloplastic implants are based on highly accurate three-dimensional (3-D) CAD modeling. Thus, it is quite important ...

  18. A three-dimensional graphic reconstruction method of the vertebral column from CT scans

    International Nuclear Information System (INIS)

    Verbout, A.J.; Falke, T.H.M.; Tinkelenberg, J.

    1983-01-01

    The method of graphic reconstruction using the oblique view technique was applied on the transverse CT scans of the vertebral column. In the scanning procedure the low-dose thin-slice technique was used. The method proved valuable for the construction of three-dimensional models as reliable reproduction of the original. The results are useful for preoperative evaluation of the deformed spine as well as for anatomic research. (orig.)

  19. A reconstruction algorithm for three-dimensional object-space data using spatial-spectral multiplexing

    Science.gov (United States)

    Wu, Zhejun; Kudenov, Michael W.

    2017-05-01

    This paper presents a reconstruction algorithm for the Spatial-Spectral Multiplexing (SSM) optical system. The goal of this algorithm is to recover the three-dimensional spatial and spectral information of a scene, given that a one-dimensional spectrometer array is used to sample the pupil of the spatial-spectral modulator. The challenge of the reconstruction is that the non-parametric representation of the three-dimensional spatial and spectral object requires a large number of variables, thus leading to an underdetermined linear system that is hard to uniquely recover. We propose to reparameterize the spectrum using B-spline functions to reduce the number of unknown variables. Our reconstruction algorithm then solves the improved linear system via a least- square optimization of such B-spline coefficients with additional spatial smoothness regularization. The ground truth object and the optical model for the measurement matrix are simulated with both spatial and spectral assumptions according to a realistic field of view. In order to test the robustness of the algorithm, we add Poisson noise to the measurement and test on both two-dimensional and three-dimensional spatial and spectral scenes. Our analysis shows that the root mean square error of the recovered results can be achieved within 5.15%.

  20. Research on image matching method of big data image of three-dimensional reconstruction

    Science.gov (United States)

    Zhang, Chunsen; Qiu, Zhenguo; Zhu, Shihuan; Wang, Xiqi; Xu, Xiaolei; Zhong, Sidong

    2015-12-01

    Image matching is the main flow of a three-dimensional reconstruction. With the development of computer processing technology, seeking the image to be matched from the large date image sets which acquired from different image formats, different scales and different locations has put forward a new request for image matching. To establish the three dimensional reconstruction based on image matching from big data images, this paper put forward a new effective matching method based on visual bag of words model. The main technologies include building the bag of words model and image matching. First, extracting the SIFT feature points from images in the database, and clustering the feature points to generate the bag of words model. We established the inverted files based on the bag of words. The inverted files can represent all images corresponding to each visual word. We performed images matching depending on the images under the same word to improve the efficiency of images matching. Finally, we took the three-dimensional model with those images. Experimental results indicate that this method is able to improve the matching efficiency, and is suitable for the requirements of large data reconstruction.

  1. Three-dimensional dictionary-learning reconstruction of (23)Na MRI data.

    Science.gov (United States)

    Behl, Nicolas G R; Gnahm, Christine; Bachert, Peter; Ladd, Mark E; Nagel, Armin M

    2016-04-01

    To reduce noise and artifacts in (23)Na MRI with a Compressed Sensing reconstruction and a learned dictionary as sparsifying transform. A three-dimensional dictionary-learning compressed sensing reconstruction algorithm (3D-DLCS) for the reconstruction of undersampled 3D radial (23)Na data is presented. The dictionary used as the sparsifying transform is learned with a K-singular-value-decomposition (K-SVD) algorithm. The reconstruction parameters are optimized on simulated data, and the quality of the reconstructions is assessed with peak signal-to-noise ratio (PSNR) and structural similarity (SSIM). The performance of the algorithm is evaluated in phantom and in vivo (23)Na MRI data of seven volunteers and compared with nonuniform fast Fourier transform (NUFFT) and other Compressed Sensing reconstructions. The reconstructions of simulated data have maximal PSNR and SSIM for an undersampling factor (USF) of 10 with numbers of averages equal to the USF. For 10-fold undersampling, the PSNR is increased by 5.1 dB compared with the NUFFT reconstruction, and the SSIM by 24%. These results are confirmed by phantom and in vivo (23)Na measurements in the volunteers that show markedly reduced noise and undersampling artifacts in the case of 3D-DLCS reconstructions. The 3D-DLCS algorithm enables precise reconstruction of undersampled (23)Na MRI data with markedly reduced noise and artifact levels compared with NUFFT reconstruction. Small structures are well preserved. © 2015 Wiley Periodicals, Inc.

  2. 16 multi-slice CT three-dimensional and multiplanar reconstruction for evaluation of pediatric congenital scoliosis

    International Nuclear Information System (INIS)

    Peng Yun; Zhang Ningning; Zhang Xuejun; Sun Guoqiang; Zeng Jinjin

    2006-01-01

    Objective: Our study is to use of 16 MSCT three-dimensional images and multiplanar reconstruction images in the preoperative investigation of patients with congenital scoliosis, to study its technical advantage and work out surgical plan. Methods: Twenty-seven pediatric patients with congenital scoliosis processing between April to October 2004 were reviewed, including 13 boys and 14 girls. X-ray plain film and sixteen multi-slice CT examination on curved/standard multiplanar reconstruction and three- dimensional computed tomographic imaging may offer, many potential advantages for defining congenital spine anomalies liable to cause progression of scoliosis, including visualization of the deformity in any plane, from any angle, with the overlying structures subtracted. Results: Ten patients had segmentation defects, 6 patients underwent formation defects, 11 patients had complex, unclassifiable anomalies. The patients of rib deformity were found in 15 patients, the most prominent part of the rib cage deformity was at the same level as the most rotated vertebra in 7 patients; 8 patients had vertebral anomalies accompanied with diastematomyelie, including 6 patients with uncompleted or completed bony spur. In 19 of 27 cases, the muhiplanar reconstruction and three-dimensional images allowed identification of unrecognized malformations and completely evaluated the degree of scoliosis, during conventional X-ray images and axial CT images, including volume 3D imaging evaluated approximately classification and modality of complex anomalies in 11 cases, which were unclassifiable malformation in 7 cases and unsegmented bar with contralateral hemivertebrae; 4 children had segmentation defects revealed unilateral unsegmented bar (3 cases) and bilateral block vertebra (1 case) in volume 3D reconstruction images; 2 children were found occultation hemivertebrae which were not been discovered during conventional X-ray images and axial CT images; and 2 children were revaluated

  3. Three-dimensional Reconstruction Method Study Based on Interferometric Circular SAR

    Directory of Open Access Journals (Sweden)

    Hou Liying

    2016-10-01

    Full Text Available Circular Synthetic Aperture Radar (CSAR can acquire targets’ scattering information in all directions by a 360° observation, but a single-track CSAR cannot efficiently obtain height scattering information for a strong directive scatter. In this study, we examine the typical target of the three-dimensional circular SAR interferometry theoryand validate the theory in a darkroom experiment. We present a 3D reconstruction of the actual tank metal model of interferometric CSAR for the first time, verify the validity of the method, and demonstrate the important potential applications of combining 3D reconstruction with omnidirectional observation.

  4. New possibilities of three-dimensional reconstruction of computed tomography scans

    International Nuclear Information System (INIS)

    Herman, M.; Tarjan, Z.; Pozzi-Mucelli, R.S.

    1996-01-01

    Three-dimensional (3D) computed tomography (CT) scan reconstructions provide impressive and illustrative images of various parts of the human body. Such images are reconstructed from a series of basic CT scans by dedicated software. The state of the art in 3D computed tomography is demonstrated with emphasis on the imaging of soft tissues. Examples are presented of imaging the craniofacial and maxillofacial complex, central nervous system, cardiovascular system, musculoskeletal system, gastrointestinal and urogenital systems, and respiratory system, and their potential in clinical practice is discussed. Although contributing no new essential diagnostic information against conventional CT scans, 3D scans can help in spatial orientation. 11 figs., 25 refs

  5. Image reconstruction using three-dimensional compound Gauss-Markov random field in emission computed tomography

    International Nuclear Information System (INIS)

    Watanabe, Shuichi; Kudo, Hiroyuki; Saito, Tsuneo

    1993-01-01

    In this paper, we propose a new reconstruction algorithm based on MAP (maximum a posteriori probability) estimation principle for emission tomography. To improve noise suppression properties of the conventional ML-EM (maximum likelihood expectation maximization) algorithm, direct three-dimensional reconstruction that utilizes intensity correlations between adjacent transaxial slices is introduced. Moreover, to avoid oversmoothing of edges, a priori knowledge of RI (radioisotope) distribution is represented by using a doubly-stochastic image model called the compound Gauss-Markov random field. The a posteriori probability is maximized by using the iterative GEM (generalized EM) algorithm. Computer simulation results are shown to demonstrate validity of the proposed algorithm. (author)

  6. Speckle reduction of reconstructions of digital holograms using three dimensional filtering

    Science.gov (United States)

    Maycock, Jonathan; McDonald, John B.; Hennelly, Bryan M.

    2013-07-01

    We report on a new digital signal processing technique that reduces speckle in reconstructions of digital holograms. This is achieved by convolving the three dimensional intensity pattern (the intensity of the propagated DH at a series of different distances) with a 3D point spread function in all three dimensions (x,y,z). It is based on the fact that the addition of different independent speckle images on an intensity basis reduces the speckle content. We provide quantitative results in terms of speckle index and resolution, and show that filtering in the z direction has the added benefit of an increase in the depth of focus of the digital hologram reconstruction.

  7. Experimental investigation of three-dimensional flow instabilities in a rotating lid-driven cavity

    DEFF Research Database (Denmark)

    Sørensen, Jens Nørkær; Naumov, I.; Mikkelsen, Robert Flemming

    2006-01-01

    The flow between a rotating lid and a stationary cylinder is studied experimentally. The flow is governed by two parameters: The ratio of container height to disk radius, h, and the Reynolds number, Re, based on the disk angular velocity, cylinder radius and kinematic viscosity of the working...... stability analysis of Gelfgat et al. [J. Fluid. Mech. 438, (2001)]. In most cases the measured onset of three-dimensionality is in good agreement with the numerical results and disagreements can be explained by bifurcations not accounted for by the stability analysis....

  8. Three dimensional reconstruction of computed tomographic images by computer graphics method

    International Nuclear Information System (INIS)

    Kashiwagi, Toru; Kimura, Kazufumi.

    1986-01-01

    A three dimensional computer reconstruction system for CT images has been developed in a commonly used radionuclide data processing system using a computer graphics technique. The three dimensional model was constructed from organ surface information of CT images (slice thickness: 5 or 10 mm). Surface contours of the organs were extracted manually from a set of parallel transverse CT slices in serial order and stored in the computer memory. Interpolation was made between a set of the extracted contours by cubic spline functions, then three dimensional models were reconstructed. The three dimensional images were displayed as a wire-frame and/or solid models on the color CRT. Solid model images were obtained as follows. The organ surface constructed from contours was divided into many triangular patches. The intensity of light to each patch was calculated from the direction of incident light, eye position and the normal to the triangular patch. Firstly, this system was applied to the liver phantom. Reconstructed images of the liver phantom were coincident with the actual object. This system also has been applied to human various organs such as brain, lung, liver, etc. The anatomical organ surface was realistically viewed from any direction. The images made us more easily understand the location and configuration of organs in vivo than original CT images. Furthermore, spacial relationship among organs and/or lesions was clearly obtained by superimposition of wire-frame and/or different colored solid models. Therefore, it is expected that this system is clinically useful for evaluating the patho-morphological changes in broad perspective. (author)

  9. Three-Dimensional Reconstruction and Solar Energy Potential Estimation of Buildings

    Science.gov (United States)

    Chen, Y.; Li, M.; Cheng, L.; Xu, H.; Li, S.; Liu, X.

    2017-12-01

    In the context of the construction of low-carbon cities, green cities and eco-cities, the ability of the airborne and mobile LiDAR should be explored in urban renewable energy research. As the main landscape in urban environment, buildings have large regular envelopes could receive a huge amount of solar radiation. In this study, a relatively complete calculation scheme about building roof and façade solar utilization potential is proposed, using building three-dimensional geometric feature information. For measuring the city-level building solar irradiance, the precise three-dimensional building roof and façade models should be first reconstructed from the airborne and mobile LiDAR, respectively. In order to obtaining the precise geometric structure of building facades from the mobile LiDAR data, a new method for structure detection and the three-dimensional reconstruction of building façades from mobile LiDAR data is proposed. The method consists of three steps: the preprocessing of façade points, the detection of façade structure, the restoration and reconstruction of building façade. As a result, the reconstruction method can effectively deal with missing areas caused by occlusion, viewpoint limitation, and uneven point density, as well as realizing the highly complete 3D reconstruction of a building façade. Furthermore, the window areas can be excluded for more accurate estimation of solar utilization potential. After then, the solar energy utilization potential of global building roofs and facades is estimate by using the solar irradiance model, which combine the analysis of the building shade and sky diffuse, based on the analysis of the geometrical structure of buildings.

  10. Color-coded volume rendering for three-dimensional reconstructions of CT data

    International Nuclear Information System (INIS)

    Rieker, O.; Mildenberger, P.; Thelen, M.

    1999-01-01

    Purpose: To evaluate a technique of colored three-dimensional reconstructions without segmentation. Material and methods: Color-coded volume rendered images were reconstructed from the volume data of 25 thoracic, abdominal, musculoskeletal, and vascular helical CT scans using commercial software. The CT volume rendered voxels were encoded with color in the following manner. Opacity, hue, lightness, and chroma were assigned to each of four classes defined by CT number. Color-coded reconstructions were compared to the corresponding grey-scale coded reconstructions. Results: Color-coded volume rendering enabled realistic visualization of pathologic findings when there was sufficient difference in CT density. Segmentation was necessary in some cases to demonstrate small details in a complex volume. Conclusion: Color-coded volume rendering allowed lifelike visualisation of CT volumes without the need of segmentation in most cases. (orig.) [de

  11. Accelerating image reconstruction in three-dimensional optoacoustic tomography on graphics processing units.

    Science.gov (United States)

    Wang, Kun; Huang, Chao; Kao, Yu-Jiun; Chou, Cheng-Ying; Oraevsky, Alexander A; Anastasio, Mark A

    2013-02-01

    Optoacoustic tomography (OAT) is inherently a three-dimensional (3D) inverse problem. However, most studies of OAT image reconstruction still employ two-dimensional imaging models. One important reason is because 3D image reconstruction is computationally burdensome. The aim of this work is to accelerate existing image reconstruction algorithms for 3D OAT by use of parallel programming techniques. Parallelization strategies are proposed to accelerate a filtered backprojection (FBP) algorithm and two different pairs of projection/backprojection operations that correspond to two different numerical imaging models. The algorithms are designed to fully exploit the parallel computing power of graphics processing units (GPUs). In order to evaluate the parallelization strategies for the projection/backprojection pairs, an iterative image reconstruction algorithm is implemented. Computer simulation and experimental studies are conducted to investigate the computational efficiency and numerical accuracy of the developed algorithms. The GPU implementations improve the computational efficiency by factors of 1000, 125, and 250 for the FBP algorithm and the two pairs of projection/backprojection operators, respectively. Accurate images are reconstructed by use of the FBP and iterative image reconstruction algorithms from both computer-simulated and experimental data. Parallelization strategies for 3D OAT image reconstruction are proposed for the first time. These GPU-based implementations significantly reduce the computational time for 3D image reconstruction, complementing our earlier work on 3D OAT iterative image reconstruction.

  12. [Application of three-dimensional laser scanning-based maxillofacial soft tissue reconstruction in orthodontic treatment].

    Science.gov (United States)

    Tian, Hua; Wu, Bu-ling; Bi, Zhen-yu; Jiao, Pei-feng; Zhao, Wei-dong; Sun, Feng-yang; Xu, Hui-yong; Liu, Yang

    2011-05-01

    To establish a convenient and rapid method for constructing a digital model of the maxillofacial soft tissue based on three-dimensional laser surface scanning to allow direct and accurate observation of the soft tissue changes in the course of orthodontic treatment. The point cloud data of three-dimensional laser scanning of the maxillofacial region were acquired from a healthy woman with Angle Class I occlusion, who maintained a horizontal Frankfort plane during scanning with the scanner placed at a distance of 80 cm. The scanning was repeated twice after wearing the dental cast for an Angle Class I occlusion. The three-dimensional digital model of the maxillofacial soft tissue was constructed based on the point cloud using GeoMagic10.0 software. The high-resolution three-dimensional model of the maxillofacial soft tissue reconstructed allowed accurate observation of the distinct facial anatomical landmarks and represented directly the soft tissue changes in the process of orthodontic treatment by merging the models. Using the analytic tool provided by the software, this model also allowed direct quantitative measurement of the nasolabial angle and the distances from the esthetic plane to the upper lip, labral inferior, and mentolabial sulcus, which were 111.86°, -3.57 mm, -2.54 mm, and 3.95 mm before orthodontic treatment as compared to 114.31°, -2.73 mm, -1.06 mm, and 3.46 mm during treatment, and 116.53°, -0.15 mm, 0.64 mm, and 3.11 mm after the treatment, respectively. Three-dimensional laser surface scanning enables accurate and rapid construction of the digital model of the facial soft tissues, which may provide valuable assistance in orthodontic treatment.

  13. Three-dimensional medical images and its application for surgical simulation of plastic and reconstructive surgery

    International Nuclear Information System (INIS)

    Kaneko, Tsuyoshi; Kobayashi, Masahiro; Nakajima, Hideo; Fujino, Toyomi

    1992-01-01

    The author's three surgical simulation systems are presented. First the computer graphics surgical simulation system has been developed which make the three dimensional skull image from CT scans and the arbitrary osteotomy, mobilization of bone segments and prediction of post-operative appearance is made possible. The second system is solid modeling of the skull using laser curable resin and it is concluded that life-sized skull model is useful not only for surgical simulation of major craniofacial surgery but also educational purposes. The third one is solid modeling of the ear using non-contact 3-D shape measurement with slit laser scanner. The mirror image life-sized wax model is made from the normal side of th ear and the autologous cartilage framework is assembled to simulate the wax model, thus the precise three dimensional reconstruction of the auricle is made possible. (author)

  14. Three-dimensional analysis of otolith-ocular reflex during eccentric rotation in humans.

    Science.gov (United States)

    Takimoto, Yasumitsu; Imai, Takao; Okumura, Tomoko; Takeda, Noriaki; Inohara, Hidenori

    2016-10-01

    When a participant is rotated while displaced from the axis of rotation (eccentric rotation, ER), both rotational stimulation and linear acceleration are applied to the participant. As linear acceleration stimulates the otolith, the vestibulo-ocular reflex (VOR) caused by the otolith (linear VOR; lVOR) would be induced during ER. Ten participants were rotated sinusoidally at a maximum angular velocity of 50°/s and at frequencies of 0.1, 0.3, 0.5, and 0.7Hz. The radius of rotation during ER was 90cm. The participants sat on a chair at three different positions: on the axis (center rotation, CR), at 90cm backward from the axis (nose-in ER, NI-ER) and at 90cm forward from the axis (nose-out ER, NO-ER). Their eye movements during rotation were recorded and analyzed three-dimensionally. The VOR gain during NI-ER was lower at 0.5 and 0.7Hz, and that during NO-ER was higher at 0.3, 0.5, and 0.7Hz than during CR. These results indicate that lVOR actually worked at 0.5 and 0.7Hz during ER and that the enhancement and decline of the VOR gain relative to the VOR gain during CR was seen in humans. Thus, we suggest that otolith function can be assessed via rotational testing of NI-ER and NO-ER. Copyright © 2016 Elsevier Ireland Ltd and Japan Neuroscience Society. All rights reserved.

  15. The Kelvin-Helmholtz instability, differential rotation, and three-dimensional, localized, magnetic reconnection

    International Nuclear Information System (INIS)

    Knoll, D.A.; Brackbill, J.U.

    2002-01-01

    Results are presented from a study of three-dimensional magnetic reconnection caused by a Kelvin-Helmholtz instability and differential rotation. Specifically, subsonic and sub-Alfvenic flow is considered, which is Kelvin-Helmholtz stable in the direction of the magnetic field, but unstable perpendicular to the magnetic field. The flow is modeled by the resistive magnetohydrodynamics equations in three dimensions with constant resistivity. As a result of differential rotation (a gradient in vorticity parallel to the initial field), localized transient reconnection is observed on the Kelvin-Helmholtz time scale. Current amplification is observed along with the generation of parallel current. Results indicate that the observed transient reconnection rate is insensitive to resistivity (even with a constant resistivity model), but is sensitive to the initial flow shear

  16. Reconstruction of three-dimensional porous media using generative adversarial neural networks

    Science.gov (United States)

    Mosser, Lukas; Dubrule, Olivier; Blunt, Martin J.

    2017-10-01

    To evaluate the variability of multiphase flow properties of porous media at the pore scale, it is necessary to acquire a number of representative samples of the void-solid structure. While modern x-ray computer tomography has made it possible to extract three-dimensional images of the pore space, assessment of the variability in the inherent material properties is often experimentally not feasible. We present a method to reconstruct the solid-void structure of porous media by applying a generative neural network that allows an implicit description of the probability distribution represented by three-dimensional image data sets. We show, by using an adversarial learning approach for neural networks, that this method of unsupervised learning is able to generate representative samples of porous media that honor their statistics. We successfully compare measures of pore morphology, such as the Euler characteristic, two-point statistics, and directional single-phase permeability of synthetic realizations with the calculated properties of a bead pack, Berea sandstone, and Ketton limestone. Results show that generative adversarial networks can be used to reconstruct high-resolution three-dimensional images of porous media at different scales that are representative of the morphology of the images used to train the neural network. The fully convolutional nature of the trained neural network allows the generation of large samples while maintaining computational efficiency. Compared to classical stochastic methods of image reconstruction, the implicit representation of the learned data distribution can be stored and reused to generate multiple realizations of the pore structure very rapidly.

  17. Reconstruction of three-dimensional porous media using generative adversarial neural networks.

    Science.gov (United States)

    Mosser, Lukas; Dubrule, Olivier; Blunt, Martin J

    2017-10-01

    To evaluate the variability of multiphase flow properties of porous media at the pore scale, it is necessary to acquire a number of representative samples of the void-solid structure. While modern x-ray computer tomography has made it possible to extract three-dimensional images of the pore space, assessment of the variability in the inherent material properties is often experimentally not feasible. We present a method to reconstruct the solid-void structure of porous media by applying a generative neural network that allows an implicit description of the probability distribution represented by three-dimensional image data sets. We show, by using an adversarial learning approach for neural networks, that this method of unsupervised learning is able to generate representative samples of porous media that honor their statistics. We successfully compare measures of pore morphology, such as the Euler characteristic, two-point statistics, and directional single-phase permeability of synthetic realizations with the calculated properties of a bead pack, Berea sandstone, and Ketton limestone. Results show that generative adversarial networks can be used to reconstruct high-resolution three-dimensional images of porous media at different scales that are representative of the morphology of the images used to train the neural network. The fully convolutional nature of the trained neural network allows the generation of large samples while maintaining computational efficiency. Compared to classical stochastic methods of image reconstruction, the implicit representation of the learned data distribution can be stored and reused to generate multiple realizations of the pore structure very rapidly.

  18. Improving three-dimensional reconstruction of buildings from web-harvested images using forensic clues

    Science.gov (United States)

    Milani, Simone; Tronca, Enrico

    2017-01-01

    During the past years, research has focused on the reconstruction of three-dimensional point cloud models from unordered and uncalibrated sets of images. Most of the proposed solutions rely on the structure-from-motion algorithm, and their performances significantly degrade whenever exchangeable image file format information about focal lengths is missing or corrupted. We propose a preprocessing strategy that permits estimating the focal lengths of a camera more accurately. The basic idea is to cluster the input images into separate subsets according to an array of interpolation-related multimedia forensic clues. This operation permits having a more robust estimate and improving the accuracy of the final model.

  19. Study of system for segmentation of images and elaboration of algorithms for three dimensional scene reconstruction

    International Nuclear Information System (INIS)

    Bufacchi, A.; Tripi, A.

    1995-09-01

    The aim of this paper is the presentation of a series of methodologies to recognize and to obtain a three-dimensional reconstruction of an inner architectural scene, using a gray level image obtained using a TV camera. In the first part of the work, a series of methods used to find the edges in an effective way are critically compared, obtaining a binary image, and then the application of the Hough transform to such binary image to find the straight lines in the original image are discussed. In the second part, an algorithm is shown in order to find the vanishing points in such image

  20. Three-dimensional fracture visualisation of multidetector CT of the skull base in trauma patients: comparison of three reconstruction algorithms

    International Nuclear Information System (INIS)

    Ringl, Helmut; Schernthaner, Ruediger; Philipp, Marcel O.; Metz-Schimmerl, Sylvia; Czerny, Christian; Weber, Michael; Steiner-Ringl, Andrea; Peloschek, Philipp; Herold, Christian J.; Schima, Wolfgang; Gaebler, Christian

    2009-01-01

    The purpose of this study was to retrospectively assess the detection rate of skull-base fractures for three different three-dimensional (3D) reconstruction methods of cranial CT examinations in trauma patients. A total of 130 cranial CT examinations of patients with previous head trauma were subjected to 3D reconstruction of the skull base, using solid (SVR) and transparent (TVR) volume-rendering technique and maximum intensity projection (MIP). Three radiologists independently evaluated all reconstructions as well as standard high-resolution multiplanar reformations (HR-MPRs). Mean fracture detection rates for all readers reading rotating reconstructions were 39, 36, 61 and 64% for SVR, TVR, MIP and HR-MPR respectively. Although not significantly different from HR-MPR with respect to sensitivity (P = 0.9), MIP visualised 18% of fractures that were not reported in HR-MPR. Because of the relatively low detection rate using HR-MPRs alone, we recommend reading MIP reconstructions in addition to the obligatory HR-MPRs to improve fracture detection. (orig.)

  1. A fully three-dimensional reconstruction algorithm with the nonstationary filter for improved single-orbit cone beam SPECT

    International Nuclear Information System (INIS)

    Cao, Z.J.; Tsui, B.M.

    1993-01-01

    Conventional single-orbit cone beam tomography presents special problems. They include incomplete sampling and inadequate three-dimensional (3D) reconstruction algorithm. The commonly used Feldkamp reconstruction algorithm simply extends the two-dimensional (2D) fan beam algorithm to 3D cone beam geometry. A truly 3D reconstruction formulation has been derived for the single-orbit cone beam SPECT based on the 3D Fourier slice theorem. In the formulation, a nonstationary filter which depends on the distance from the central plane of the cone beam was derived. The filter is applied to the 2D projection data in directions along and normal to the axis-of-rotation. The 3D reconstruction algorithm with the nonstationary filter was evaluated using both computer simulation and experimental measurements. Significant improvement in image quality was demonstrated in terms of decreased artifacts and distortions in cone beam reconstructed images. However, compared with the Feldkamp algorithm, a five-fold increase in processing time is required. Further improvement in image quality needs complete sampling in frequency space

  2. Three-dimensional coating and rimming flow: a ring of fluid on a rotating horizontal cylinder

    KAUST Repository

    Leslie, G. A.

    2013-01-29

    The steady three-dimensional flow of a thin, slowly varying ring of Newtonian fluid on either the outside or the inside of a uniformly rotating large horizontal cylinder is investigated. Specifically, we study \\'full-ring\\' solutions, corresponding to a ring of continuous, finite and non-zero thickness that extends all of the way around the cylinder. In particular, it is found that there is a critical solution corresponding to either a critical load above which no full-ring solution exists (if the rotation speed is prescribed) or a critical rotation speed below which no full-ring solution exists (if the load is prescribed). We describe the behaviour of the critical solution and, in particular, show that the critical flux, the critical load, the critical semi-width and the critical ring profile are all increasing functions of the rotation speed. In the limit of small rotation speed, the critical flux is small and the critical ring is narrow and thin, leading to a small critical load. In the limit of large rotation speed, the critical flux is large and the critical ring is wide on the upper half of the cylinder and thick on the lower half of the cylinder, leading to a large critical load. We also describe the behaviour of the non-critical full-ring solution and, in particular, show that the semi-width and the ring profile are increasing functions of the load but, in general, non-monotonic functions of the rotation speed. In the limit of large rotation speed, the ring approaches a limiting non-uniform shape, whereas in the limit of small load, the ring is narrow and thin with a uniform parabolic profile. Finally, we show that, while for most values of the rotation speed and the load the azimuthal velocity is in the same direction as the rotation of the cylinder, there is a region of parameter space close to the critical solution for sufficiently small rotation speed in which backflow occurs in a small region on the upward-moving side of the cylinder. © 2013

  3. Probabilistic Evaluation of Three-Dimensional Reconstructions from X-Ray Images Spanning a Limited Angle

    Directory of Open Access Journals (Sweden)

    Jörn Ostermann

    2012-12-01

    Full Text Available An important part of computed tomography is the calculation of a three-dimensional reconstruction of an object from series of X-ray images. Unfortunately, some applications do not provide sufficient X-ray images. Then, the reconstructed objects no longer truly represent the original. Inside of the volumes, the accuracy seems to vary unpredictably. In this paper, we introduce a novel method to evaluate any reconstruction, voxel by voxel. The evaluation is based on a sophisticated probabilistic handling of the measured X-rays, as well as the inclusion of a priori knowledge about the materials that the object receiving the X-ray examination consists of. For each voxel, the proposed method outputs a numerical value that represents the probability of existence of a predefined material at the position of the voxel while doing X-ray. Such a probabilistic quality measure was lacking so far. In our experiment, false reconstructed areas get detected by their low probability. In exact reconstructed areas, a high probability predominates. Receiver Operating Characteristics not only confirm the reliability of our quality measure but also demonstrate that existing methods are less suitable for evaluating a reconstruction.

  4. Application of Symmetry Adapted Function Method for Three-Dimensional Reconstruction of Octahedral Biological Macromolecules

    Directory of Open Access Journals (Sweden)

    Songjun Zeng

    2010-01-01

    Full Text Available A method for three-dimensional (3D reconstruction of macromolecule assembles, that is, octahedral symmetrical adapted functions (OSAFs method, was introduced in this paper and a series of formulations for reconstruction by OSAF method were derived. To verify the feasibility and advantages of the method, two octahedral symmetrical macromolecules, that is, heat shock protein Degp24 and the Red-cell L Ferritin, were utilized as examples to implement reconstruction by the OSAF method. The schedule for simulation was designed as follows: 2000 random orientated projections of single particles with predefined Euler angles and centers of origins were generated, then different levels of noises that is signal-to-noise ratio (S/N =0.1,0.5, and 0.8 were added. The structures reconstructed by the OSAF method were in good agreement with the standard models and the relative errors of the structures reconstructed by the OSAF method to standard structures were very little even for high level noise. The facts mentioned above account for that the OSAF method is feasible and efficient approach to reconstruct structures of macromolecules and have ability to suppress the influence of noise.

  5. Probabilistic Evaluation of Three-Dimensional Reconstructions from X-Ray Images Spanning a Limited Angle

    Science.gov (United States)

    Frost, Anja; Renners, Eike; Hötter, Michael; Ostermann, Jörn

    2013-01-01

    An important part of computed tomography is the calculation of a three-dimensional reconstruction of an object from series of X-ray images. Unfortunately, some applications do not provide sufficient X-ray images. Then, the reconstructed objects no longer truly represent the original. Inside of the volumes, the accuracy seems to vary unpredictably. In this paper, we introduce a novel method to evaluate any reconstruction, voxel by voxel. The evaluation is based on a sophisticated probabilistic handling of the measured X-rays, as well as the inclusion of a priori knowledge about the materials that the object receiving the X-ray examination consists of. For each voxel, the proposed method outputs a numerical value that represents the probability of existence of a predefined material at the position of the voxel while doing X-ray. Such a probabilistic quality measure was lacking so far. In our experiment, false reconstructed areas get detected by their low probability. In exact reconstructed areas, a high probability predominates. Receiver Operating Characteristics not only confirm the reliability of our quality measure but also demonstrate that existing methods are less suitable for evaluating a reconstruction. PMID:23344378

  6. Quantum Theory of Three-Dimensional Superresolution Using Rotating-PSF Imagery

    Science.gov (United States)

    Prasad, S.; Yu, Z.

    The inverse of the quantum Fisher information (QFI) matrix (and extensions thereof) provides the ultimate lower bound on the variance of any unbiased estimation of a parameter from statistical data, whether of intrinsically quantum mechanical or classical character. We calculate the QFI for Poisson-shot-noise-limited imagery using the rotating PSF that can localize and resolve point sources fully in all three dimensions. We also propose an experimental approach based on the use of computer generated hologram and projective measurements to realize the QFI-limited variance for the problem of super-resolving a closely spaced pair of point sources at a highly reduced photon cost. The paper presents a preliminary analysis of quantum-limited three-dimensional (3D) pair optical super-resolution (OSR) problem with potential applications to astronomical imaging and 3D space-debris localization.

  7. Three-dimensional rotating flow of carbon nanotubes with Darcy-Forchheimer porous medium.

    Directory of Open Access Journals (Sweden)

    Tasawar Hayat

    Full Text Available Here we are concerned with the Darcy-Forchheimer three-dimensional flow of carbon nanotubes in a rotating frame. Flow is generated by stretching of the surface. Xue model is adopted for nanofluid transport mechanism. Results for single wall carbon nanotubes (SWCNTs and multi wall carbon nanotubes are achieved and compared. Flow saturating porous space obeys Darcy-Forchheimer expression. Boundary layer approximations are invoked to simplify governing partial differential system. Optimal homotopy analysis method (OHAM is utilized for solutions of governing model. The optimal values of auxiliary parameters are computed. Plots have been displayed in order to analyze how the velocities and temperature fields get affected by various flow parameters. Skin-friction coefficients and local Nusselt number are presented through numerical data for both SWCNTs and MWCNTs. Moreover the skin-friction coefficients and local Nusselt number are enhanced for larger values of nanoparticles volume fraction.

  8. Three-dimensional rotating flow of carbon nanotubes with Darcy-Forchheimer porous medium.

    Science.gov (United States)

    Hayat, Tasawar; Haider, Farwa; Muhammad, Taseer; Alsaedi, Ahmed

    2017-01-01

    Here we are concerned with the Darcy-Forchheimer three-dimensional flow of carbon nanotubes in a rotating frame. Flow is generated by stretching of the surface. Xue model is adopted for nanofluid transport mechanism. Results for single wall carbon nanotubes (SWCNTs) and multi wall carbon nanotubes are achieved and compared. Flow saturating porous space obeys Darcy-Forchheimer expression. Boundary layer approximations are invoked to simplify governing partial differential system. Optimal homotopy analysis method (OHAM) is utilized for solutions of governing model. The optimal values of auxiliary parameters are computed. Plots have been displayed in order to analyze how the velocities and temperature fields get affected by various flow parameters. Skin-friction coefficients and local Nusselt number are presented through numerical data for both SWCNTs and MWCNTs. Moreover the skin-friction coefficients and local Nusselt number are enhanced for larger values of nanoparticles volume fraction.

  9. Image-guided stereotactic surgery using ultrasonography and reconstructive three-dimensional CT-imaging system

    Energy Technology Data Exchange (ETDEWEB)

    Kawamura, Hirotsune; Iseki, Hiroshi; Umezawa, Yoshihiro (Tokyo Women' s Medical Coll. (Japan)) (and others)

    1991-12-01

    A new simulation and navigation system utilizing three-dimensional CT images has been developed for image-guided stereotactic surgery. Preoperative CT images are not always useful in predicting the intraoperative location of lesions, for cerebral lesions are easily displaced or distorted by gravity, brain retraction, and/or CSF aspiration during operative procedure. This new system, however, has the advantage that the intraoperative locations of intracranial lesions or the anatomical structures of the brain can be precisely confirmed during stereotactic surgery. Serial CT images were obtained from a patient whose head had been fixed to the ISEKI CT-guided stereotactic frame. The data of serial CT images were saved on a floppy disc and then transferred to the work station (IRIS) using the off line. In order to find the best approach angle for ultrasound-guided stereotactic surgery, three-dimenstional CT images were reconstructed using the work station. The site of the craniotomy or the angle of the trajectory of the ultrasound probe was measured preoperatively based on the three-dimensional CT images. Then, in the operating room, the patient's head was fixed to the ISEKI frame with the subframe at the same position as before according to the measurement of the CT images. In a case of cystic glioma, the predicable ultrasonograms from three-dimensional reconstructive CT images were ascertained to correspond well to the actual ultrasound images during ultrasound-guided stereotactic surgery. Therefore, the new simulation and navigation system can be judged to be a powerful operative supporting modality for correcting the locations of cerebral lesions; it allows one to perform stereotactic surgery more accurately and less invasively. (author).

  10. Comparison of different reconstruction algorithms for three-dimensional ultrasound imaging in a neurosurgical setting.

    Science.gov (United States)

    Miller, D; Lippert, C; Vollmer, F; Bozinov, O; Benes, L; Schulte, D M; Sure, U

    2012-09-01

    Freehand three-dimensional ultrasound imaging (3D-US) is increasingly used in image-guided surgery. During image acquisition, a set of B-scans is acquired that is distributed in a non-parallel manner over the area of interest. Reconstructing these images into a regular array allows 3D visualization. However, the reconstruction process may introduce artefacts and may therefore reduce image quality. The aim of the study is to compare different algorithms with respect to image quality and diagnostic value for image guidance in neurosurgery. 3D-US data sets were acquired during surgery of various intracerebral lesions using an integrated ultrasound-navigation device. They were stored for post-hoc evaluation. Five different reconstruction algorithms, a standard multiplanar reconstruction with interpolation (MPR), a pixel nearest neighbour method (PNN), a voxel nearest neighbour method (VNN) and two voxel based distance-weighted algorithms (VNN2 and DW) were tested with respect to image quality and artefact formation. The capability of the algorithm to fill gaps within the sample volume was investigated and a clinical evaluation with respect to the diagnostic value of the reconstructed images was performed. MPR was significantly worse than the other algorithms in filling gaps. In an image subtraction test, VNN2 and DW reliably reconstructed images even if large amounts of data were missing. However, the quality of the reconstruction improved, if data acquisition was performed in a structured manner. When evaluating the diagnostic value of reconstructed axial, sagittal and coronal views, VNN2 and DW were judged to be significantly better than MPR and VNN. VNN2 and DW could be identified as robust algorithms that generate reconstructed US images with a high diagnostic value. These algorithms improve the utility and reliability of 3D-US imaging during intraoperative navigation. Copyright © 2012 John Wiley & Sons, Ltd.

  11. Three-dimensional reconstruction of enamel thickness and volume in humans and hominoids.

    Science.gov (United States)

    Gantt, David G; Kappleman, John; Ketcham, Richard A; Alder, Marden E; Deahl, Thomas H

    2006-05-01

    Enamel thickness is an important diagnostic characteristic in Hominoidea. However, the sample size is extremely small, relying upon mostly fractured specimens and a few sectioned specimens, providing an estimate of enamel thickness only. What is needed to fully understand the significance of enamel thickness is a non-destructive technique that is able to obtain the thickness, density, and volume of the dental hard tissues of large samples, thereby providing an accurate means of relating thickness, area, volume, and the pattern of distribution of both enamel and dentin. Investigators have attempted to circumvent this problem by developing a variety of indexes. However, we are still left with subjective descriptions, such as 'thin', 'thick', 'intermediate thick', and 'hyperthick'. The purpose of this investigation was therefore to demonstrate the ability of high-resolution X-ray computed microtomography (HRXCT), as a non-destructive method, to produce, accurately and reliably, contiguous slices revealing the thickness and area of enamel, dentin, and pulp chamber. Using imaging software, three-dimensional reconstructions were produced, which provided volume data for enamel and dentin. Three-dimensional reconstruction of HRXCT images provide, for the first time, the capability of accurately quantifying enamel and dentin thickness, distribution and volume, thereby eliminating the necessity of destructive thin-sectional analysis.

  12. Three dimensional reconstruction of fossils with X-ray CT and computer graphics

    Energy Technology Data Exchange (ETDEWEB)

    Hamada, Takashi; Tateno, Satoko (Tokyo Univ. (Japan). Coll. of Arts and Sciences); Suzuki, Naoki

    1991-12-01

    We have developed a method for three dimensional (3D) visualization of fossils such as trilobites and ammonites by non-destructive measurement and computer graphics. The imaging techniques in the medical sciences are applied for fossils by us to have quantitative data analyses on the structural and functional features of some extinct creatures. These methods are composed of a high resolutional X-ray computed tomography (X-ray CT) and computer graphics. We are able to observe not only outer shape but also inner structure of fossils as a 3D image by this method. Consequently, the shape and volume are measurable on these 3D image quantitatively. In addition to that, it is able to reconstruct an ideal figure from the deformed fossils by graphical treatments of the data. Such a 3D reconstruction method is useful to obtain a new information from the paleontological standpoint. (author).

  13. A new method for three-dimensional laparoscopic ultrasound model reconstruction

    DEFF Research Database (Denmark)

    Fristrup, C W; Pless, T; Durup, J

    2004-01-01

    was to perform a volumetric test and a clinical feasibility test of a new 3D method using standard laparoscopic ultrasound equipment. METHODS: Three-dimensional models were reconstructed from a series of two-dimensional ultrasound images using either electromagnetic tracking or a new 3D method. The volumetric...... accuracy of the new method was tested ex vivo, and the clinical feasibility was tested on a small series of patients. RESULTS: Both electromagnetic tracked reconstructions and the new 3D method gave good volumetric information with no significant difference. Clinical use of the new 3D method showed...... accurate models comparable to findings at surgery and pathology. CONCLUSIONS: The use of the new 3D method is technically feasible, and its volumetrically, accurate compared to 3D with electromagnetic tracking....

  14. Three-dimensional slum urban reconstruction in Envisat and Google Earth Egypt

    Science.gov (United States)

    Marghany, M.; Genderen, J. v.

    2014-02-01

    This study aims to aim to investigate the capability of ENVISAT ASAR satellite and Google Earth data for three-dimensional (3-D) slum urban reconstruction in developed country such as Egypt. The main objective of this work is to utilize 3-D automatic detection algorithm for urban slum in ENVISAT ASAR and Google Erath images were acquired in Cairo, Egypt using Fuzzy B-spline algorithm. The results show that fuzzy algorithm is the best indicator for chaotic urban slum as it can discriminate them from its surrounding environment. The combination of Fuzzy and B-spline then used to reconstruct 3-D of urban slam. The results show that urban slums, road network, and infrastructures are perfectly discriminated. It can therefore be concluded that fuzzy algorithm is an appropriate algorithm for chaotic urban slum automatic detection in ENVSIAT ASAR and Google Earth data.

  15. Three-dimensional slum urban reconstruction in Envisat and Google Earth Egypt

    International Nuclear Information System (INIS)

    Marghany, M; Genderen, J v

    2014-01-01

    This study aims to aim to investigate the capability of ENVISAT ASAR satellite and Google Earth data for three-dimensional (3-D) slum urban reconstruction in developed country such as Egypt. The main objective of this work is to utilize 3-D automatic detection algorithm for urban slum in ENVISAT ASAR and Google Erath images were acquired in Cairo, Egypt using Fuzzy B-spline algorithm. The results show that fuzzy algorithm is the best indicator for chaotic urban slum as it can discriminate them from its surrounding environment. The combination of Fuzzy and B-spline then used to reconstruct 3-D of urban slam. The results show that urban slums, road network, and infrastructures are perfectly discriminated. It can therefore be concluded that fuzzy algorithm is an appropriate algorithm for chaotic urban slum automatic detection in ENVSIAT ASAR and Google Earth data

  16. Three dimensional reconstruction of fossils with X-ray CT and computer graphics

    International Nuclear Information System (INIS)

    Hamada, Takashi; Tateno, Satoko; Suzuki, Naoki.

    1991-01-01

    We have developed a method for three dimensional (3D) visualization of fossils such as trilobites and ammonites by non-destructive measurement and computer graphics. The imaging techniques in the medical sciences are applied for fossils by us to have quantitative data analyses on the structural and functional features of some extinct creatures. These methods are composed of a high resolutional X-ray computed tomography (X-ray CT) and computer graphics. We are able to observe not only outer shape but also inner structure of fossils as a 3D image by this method. Consequently, the shape and volume are measurable on these 3D image quantitatively. In addition to that, it is able to reconstruct an ideal figure from the deformed fossils by graphical treatments of the data. Such a 3D reconstruction method is useful to obtain a new information from the paleontological standpoint. (author)

  17. Fully three dimensional simulations of rotating convection at low Prandtl number

    Science.gov (United States)

    Kaplan, E.; Schaeffer, N.; Cardin, P.

    2016-12-01

    Rotating thermal convection in spheres or spherical shells has been extensively studied for Prandtl number unity.However, planetary cores are made of liquid metals which have low Prandtl numbers Pr ≤ 0.1. Recently, using a quasi-geostrophic approximation, Guervilly & Cardin (2016) have studied nonlinear convection in rotating full sphere with internal heating at low Prandtl (0.01 ≤ Pr ≤ 0.1) and Ekman (10-8 ≤ Ek ≤ 10-5 ) numbers. They have found a bifurcation between a weak branch characterized by thermal Rossby waves and a strong branch characterized by a strong zonal flow with multiple jets. In these quasi-geostrophic simulations, where vorticity is defined to be constant along the axis of rotation, these bifurcations could be super- or sub-critical or exhibit hysteresis depending on the Ek and Prnumbers of the simulations. Here we present fully three dimensional simulations carried out over a portion of the parameter space (down to Ek = 10-6, Pr = 0.01) that confirm the scaling and bifurcations of the weak and strong branches found in the QG models. Additionally, by modeling the full flow we get information about the full meridional circulation of the convective fluid. The vigorous flows of the sub-critical strong branch may help to generate powerful dynamos before an inner-core has been formed, with a heat flux extracted from the mantle very close to the adiabatic flux.

  18. Experimental and numerical results on three-dimensional instabilities in a rotating disk-tall cylinder flow

    DEFF Research Database (Denmark)

    Sørensen, Jens Nørkær; Gelfgat, A. Yu; Naumov, I. V.

    2009-01-01

    for each mode. The onset of three-dimensional flow behavior is measured by combining the high spatial resolution of particle image velocimetry and the temporal accuracy of laser Doppler anemometry. The results are compared to the numerical stability analysis. The measured onset of three dimensionality......The three-dimensional axisymmetry-breaking instability of axisymmetric flow between a rotating lid and a stationary cylinder is analyzed both numerically and experimentally for the case of tall cylinders with the height/radius aspect ratio between 3.3 and 5.5. A complete stability diagram...... for the primary three-dimensional instability is obtained experimentally and computed numerically. The instability sets in due to different three-dimensional disturbance modes that are characterized by different azimuthal wavenumbers. The critical Reynolds numbers and associated frequencies are identified...

  19. Three-dimensional focus of attention for iterative cone-beam micro-CT reconstruction

    International Nuclear Information System (INIS)

    Benson, T M; Gregor, J

    2006-01-01

    Three-dimensional iterative reconstruction of high-resolution, circular orbit cone-beam x-ray CT data is often considered impractical due to the demand for vast amounts of computer cycles and associated memory. In this paper, we show that the computational burden can be reduced by limiting the reconstruction to a small, well-defined portion of the image volume. We first discuss using the support region defined by the set of voxels covered by all of the projection views. We then present a data-driven preprocessing technique called focus of attention that heuristically separates both image and projection data into object and background before reconstruction, thereby further reducing the reconstruction region of interest. We present experimental results for both methods based on mouse data and a parallelized implementation of the SIRT algorithm. The computational savings associated with the support region are substantial. However, the results for focus of attention are even more impressive in that only about one quarter of the computer cycles and memory are needed compared with reconstruction of the entire image volume. The image quality is not compromised by either method

  20. Verifying three-dimensional skull model reconstruction using cranial index of symmetry.

    Science.gov (United States)

    Kung, Woon-Man; Chen, Shuo-Tsung; Lin, Chung-Hsiang; Lu, Yu-Mei; Chen, Tzu-Hsuan; Lin, Muh-Shi

    2013-01-01

    Difficulty exists in scalp adaptation for cranioplasty with customized computer-assisted design/manufacturing (CAD/CAM) implant in situations of excessive wound tension and sub-cranioplasty dead space. To solve this clinical problem, the CAD/CAM technique should include algorithms to reconstruct a depressed contour to cover the skull defect. Satisfactory CAM-derived alloplastic implants are based on highly accurate three-dimensional (3-D) CAD modeling. Thus, it is quite important to establish a symmetrically regular CAD/CAM reconstruction prior to depressing the contour. The purpose of this study is to verify the aesthetic outcomes of CAD models with regular contours using cranial index of symmetry (CIS). From January 2011 to June 2012, decompressive craniectomy (DC) was performed for 15 consecutive patients in our institute. 3-D CAD models of skull defects were reconstructed using commercial software. These models were checked in terms of symmetry by CIS scores. CIS scores of CAD reconstructions were 99.24±0.004% (range 98.47-99.84). CIS scores of these CAD models were statistically significantly greater than 95%, identical to 99.5%, but lower than 99.6% (ppairs signed rank test). These data evidenced the highly accurate symmetry of these CAD models with regular contours. CIS calculation is beneficial to assess aesthetic outcomes of CAD-reconstructed skulls in terms of cranial symmetry. This enables further accurate CAD models and CAM cranial implants with depressed contours, which are essential in patients with difficult scalp adaptation.

  1. Toward a virtual reconstruction of an antique three-dimensional marble puzzle

    Science.gov (United States)

    Benamar, Fatima Zahra; Fauvet, Eric; Hostein, Antony; Laligant, Olivier; Truchetet, Frederic

    2017-01-01

    The reconstruction of broken objects is an important field of research for many applications, such as art restoration, surgery, forensics, and solving puzzles. In archaeology, the reconstruction of broken artifacts is a very time-consuming task due to the handling of fractured objects, which are generally fragile. However, it can now be supported by three-dimensional (3-D) data acquisition devices and computer processing. Those techniques are very useful in this domain because they allow the remote handling of very accurate models of fragile parts, they permit the extensive testing of reconstruction solutions, and they provide access to the parts for the entire research community. An interesting problem has recently been proposed by archaeologists in the form of a huge puzzle composed of a thousand fragments of Pentelic marble of different sizes found in Autun (France), and all attempts to reconstruct the puzzle during the last two centuries have failed. Archaeologists are sure that some fragments are missing and that some of the ones we have come from different slabs. We propose an inexpensive transportable system for 3-D acquisition setup and a 3-D reconstruction method that is applied to this Roman inscription but is also relevant to other applications.

  2. Dynamic evaluation of pelvic floor reconstructive surgery using radiopaque meshes and three-dimensional helical CT

    Directory of Open Access Journals (Sweden)

    Paulo Palma

    2010-04-01

    Full Text Available PURPOSE: This prospective study was performed to achieve visualization of the reestablishment of anatomy after reconstructive surgery in the different pelvic compartments with non-absorbable radiopaque meshes, providing valuable anatomic information for surgeons implanting meshes. MATERIALS AND METHODS: A total of 30 female patients with stress urinary incontinence (SUI, anterior and posterior vaginal wall prolapse, or both underwent surgical repair using radiopaque meshes after written informed consent. Patients with SUI underwent five different surgeries. Patients with anterior vaginal prolapse underwent a procedure using a combined pre-pubic and transobturator mesh, and those with posterior vaginal prolapse underwent posterior slingplasty. Three-dimensional reconstruction using helical CT was performed four weeks postoperatively. RESULTS: In all cases, the mesh was clearly visualized. Transobturator slings were shown at the midurethra, and the anchoring tails perforated the obturator foramen at the safety region. Mini-slings were in the proper place, and computed angiography revealed that the anchoring system was away from the obturator vessels. In patients undergoing procedure for anterior vaginal prolapse, both pre-pubic armpit and obturator slings were clearly seen and the mesh was in the proper position, supporting the bladder base and occluding the distal part of the urogenital hiatus. Transcoccygeal sacropexy revealed indirectly a well-supported "neo rectovaginal fascia" and the anchoring tails at the level of ischial spines. CONCLUSION: Three-dimensional helical tomography images of the female pelvis using radiopaque meshes have a potential role in improving our understanding of pelvic floor reconstructive surgeries. These radiopaque meshes might be the basis of a new investigative methodology.

  3. Relationship between mechanical axis-derived and anatomic landmark-derived femoral rotation in TKA: a three-dimensional CT study.

    Science.gov (United States)

    Seo, Jai Gon; Choi, Sang-Hee; Shin, Sulkyoung; Lee, Byung Hoon; Chang, Moon Jong

    2014-12-01

    We sought to determine the relationship between the mechanical axis-derived and the anatomic landmark-derived femoral rotational axes using three dimensional computed tomographic images of 20 lower extremities. The mechanical axis-derived femoral rotational axis was created on the distal articular surface of the femur using coronal mechanical limb axis and the reconstructed images of the femur. Then, we measured the angular difference between mechanical axis-derived and anatomic landmark-derived femoral rotational axes. The mechanical axis-derived femoral rotational axis was externally rotated with a mean of 2.2° (range, 0 to 4.7°; SD, 1.0) compared with the surgical epicondylar axis. Our findings should be considered to obtain a proper femoral rotational axis in total knee arthroplasty. Copyright © 2014 Elsevier Inc. All rights reserved.

  4. Clinical application of EBCT angiography and three-dimensional reconstruction in the diagnosis of aortic disease

    International Nuclear Information System (INIS)

    Lu Bin; Dai Ruping; Zhang Shaoxiong; Bai Hua; He Sha; Jing Baolian; Cao Cheng; Ren Li

    1998-01-01

    Purpose: To work out the routine and three dimensional reconstruction (3D) methods of electron beam computed tomography angiography (EBCTA) and evaluate its clinical application. Materials and methods: In this group, 189 cases with aortic diseases (152 male, 37 female) were studied retrospectively. The EBCT scan methods were enhanced single slice mode (SSM) and continuous volume scan (CVS); The 3D reconstruction methods were shaded surface display (SSD), maximum intensity projection (MIP) and multiple/curved planar reconstruction (MPR/CPR). Results: In 189 cases, including 97 cases with aortic dissection, 26 cases with aortic aneurysm and 8 cases with pseudo aneurysm, others including Marfan's syndrome in 37 cases, Takayasu's arteritis in 5 cases and congenital aortic malformations in 14 cases; 68 cases received operation and the EBCT diagnosis coincided well with the operative findings in 97% of cases. Conclusion: EBCT angiographic images have very high temporal resolution and most artifacts are eliminated. The 3D images are in helpful accurate diagnosis and direct surgical operation. In the management of aortic diseases, EBCT angiography and 3D reconstruction may supplant conventional angiography in the near future

  5. Three-dimensional profilometric reconstruction using flexible sensing integral imaging and occlusion removal.

    Science.gov (United States)

    Shen, Xin; Markman, Adam; Javidi, Bahram

    2017-03-20

    We present a method for three-dimensional (3D) profilometric reconstruction using flexible sensing integral imaging with object recognition and automatic occlusion removal. Two-dimensional images, known as elemental images (EIs), of a scene containing an object behind occlusion are captured by flexible sensing integral imaging using a moving camera randomly placed on a non-planar surface with unknown camera position and orientation. After 3D image acquisition, the unknown camera poses are estimated using the EIs and 3D reconstruction is performed based on flexible sensing integral imaging. Object recognition using the 3D reconstructed images is conducted to detect the object behind occlusion and estimate the object depth and position. Occlusion removal is then performed on the 2D EIs for the occluded object by computing variance maps of the scene. For each EI, occluded object pixels with low variance are replaced by object pixels from other perspectives using multi-view geometry. The new set of elemental images may be used to visualize the 3D profile of the scene containing the object without occlusion. Experiments are performed to validate the feasibility of the proposed method. To the best of our knowledge, this is the first report of applying flexible sensing integral imaging to profilometric reconstruction with object recognition and occlusion removal.

  6. Use of a three-dimensional custom-made porous titanium prosthesis for mandibular body reconstruction.

    Science.gov (United States)

    Qassemyar, Q; Assouly, N; Temam, S; Kolb, F

    2017-10-01

    The progress made in recent years in the field of head and neck bone reconstruction is directly related to technological advancements made in computer-aided design and manufacturing (CAD/CAM) and three-dimensional printing in particular. Today these technologies are mainly used in mandibular reconstruction to manufacture aids for harvesting and shaping bone flaps. However problems remain when addressing patients with a contraindication to microsurgery who need extensive bone reconstruction. For these patients who cannot benefit from vascularized bone grafts, surgeons have to find alternative solutions aimed at maintaining best function and aesthetics. The goal of this article is to present an original method for mandibular body replacement with custom-made porous titanium prostheses in patients ineligible for a bone free flap. This solution has been used for two patients with an intraoral approach, resulting in no visible scars, with simple postoperative care of a short duration. This innovative solution represents an additional option for the treatment of complex mandibular reconstructions. Copyright © 2017 International Association of Oral and Maxillofacial Surgeons. Published by Elsevier Ltd. All rights reserved.

  7. High-quality three-dimensional reconstruction and noise reduction of multifocal images from oversized samples

    Science.gov (United States)

    Martišek, Dalibor; Procházková, Jana; Ficker, Tomáš

    2015-09-01

    Three-dimensional (3-D) reconstruction is an indispensable tool in areas such as biology, chemistry, medicine, material sciences, etc. The sample can be reconstructed using confocal or nonconfocal mode of a microscope. The limitation of the confocal approach is the sample size. Currently used devices work mostly with sample surface area up to 1 cm2. We suggest a three-step method that creates 3-D reconstruction from multifocal images in nonconfocal mode that is qualitatively comparable to the confocal results. Our method, thus, takes advantage of both microscope modes-high-quality results without sample size limitation. The preprocessing step eliminates the additive noise with Linderberg-Lévi theorem. The main focus criterion is based on adjusted Fourier transform. In the final step, we eliminate the defective clusters using the adaptive pixel neighborhood algorithm. We proved the effectiveness of our noise reduction and 3-D reconstruction method by the statistical comparisons; the correlation coefficients average 0.987 for all types of Fourier transforms.

  8. Three-Dimensional Custom-Made Titanium Ribs for Reconstruction of a Large Chest Wall Defect.

    Science.gov (United States)

    Simal, Isabel; García-Casillas, Maria Antonia; Cerdá, Julio Arturo; Riquelme, Óscar; Lorca-García, Concepción; Pérez-Egido, Laura; Fernández-Bautista, Beatriz; Torre, Manuel de la; de Agustín, Juan Carlos

    2016-12-01

    Reconstruction of large chest wall defects always demand surgeons of having lots of means available (both materials and resourceful) to apply a cover to chest wall defects which can range from a few centimeters to the lack of a few entire ribs. In this study, we present the case of a teenager who suffered from a complete resection of three ribs because of Ewing sarcoma dependent on the sixth rib. Given the size of the defect, a multidisciplinary approach was chosen to provide rigid and soft tissue coverage and minimal functional and aesthetic impact. Custom-made titanium implants were designed based on three-dimensional computed tomography scan reconstruction. The surgical specimen via a left lateral thoracotomy (fifth, sixth, and seventh entire ribs) was resected, leaving a defect of 35 × 12 × 6 cm. A Gore-Tex patch (W. L. Gore & Associates, Arizona, United States) was placed and, after that, the implants were anchored to the posterior fragment of the healthy ribs and to the costal cartilage anteriorly. Finally, the surgical site was covered with a latissimus dorsi flap. The postoperative course was uneventful. After 9 months of follow-up, the patient has full mobility. This case shows that the implant of custom-made ribs, combined with other techniques, is a good surgical choice for reconstruction of large chest wall defects. The implant of custom-made ribs, combined with other techniques, is a good surgical choice for reconstruction of large chest wall defects.

  9. Multiphase three-dimensional direct numerical simulation of a rotating impeller with code Blue

    Science.gov (United States)

    Kahouadji, Lyes; Shin, Seungwon; Chergui, Jalel; Juric, Damir; Craster, Richard V.; Matar, Omar K.

    2017-11-01

    The flow driven by a rotating impeller inside an open fixed cylindrical cavity is simulated using code Blue, a solver for massively-parallel simulations of fully three-dimensional multiphase flows. The impeller is composed of four blades at a 45° inclination all attached to a central hub and tube stem. In Blue, solid forms are constructed through the definition of immersed objects via a distance function that accounts for the object's interaction with the flow for both single and two-phase flows. We use a moving frame technique for imposing translation and/or rotation. The variation of the Reynolds number, the clearance, and the tank aspect ratio are considered, and we highlight the importance of the confinement ratio (blade radius versus the tank radius) in the mixing process. Blue uses a domain decomposition strategy for parallelization with MPI. The fluid interface solver is based on a parallel implementation of a hybrid front-tracking/level-set method designed complex interfacial topological changes. Parallel GMRES and multigrid iterative solvers are applied to the linear systems arising from the implicit solution for the fluid velocities and pressure in the presence of strong density and viscosity discontinuities across fluid phases. EPSRC, UK, MEMPHIS program Grant (EP/K003976/1), RAEng Research Chair (OKM).

  10. Structural dynamic modeling for rotating blades using three dimensional finite elements

    Energy Technology Data Exchange (ETDEWEB)

    Kee, Young Jung; Shin, Sang Joon [Seoul National University, Seoul (Korea, Republic of)

    2015-04-15

    A precise analysis model was developed in this paper to investigate the dynamic characteristics of rotating composite blades. An eighteen-node solid-shell finite element was used to model the blade structures. This study is focused on geometrically nonlinear problems, because the material is assumed linear elastic. Incremental total Lagrangian approach was adopted to allow estimations on arbitrarily large rotations and displacements. The equations of motion for the finite element model were derived by using Hamilton's principle, and the resulting nonlinear equilibrium equations were solved by applying Newton-Raphson method combined with load control. A modified stress-strain relation was adopted to avoid the transverse shear locking problem, and fairly reliable results were obtained with no sign of locking phenomenon. The obtained numerical results were compared to several benchmark problems, and the results show a good correlation with the experimental data and other finite element analysis results. The vibration characteristics of shell- and beam-type blades were investigated. For shell-type blades, the dynamic characteristics may be significantly influenced by blade curvature, pre-twist, and geometric nonlinearity. For beam-type blades, one-dimensional beam and three-dimensional solid models offer comparable predictions for the straight and large aspect ratio blade. As blade aspect ratio decreases, considerable differences appear in the bending and torsion modes. The tip sweep angle tends to decrease the flap bending frequencies, but the torsion frequency increases with the tip sweep angle.

  11. Structural dynamic modeling for rotating blades using three dimensional finite elements

    International Nuclear Information System (INIS)

    Kee, Young Jung; Shin, Sang Joon

    2015-01-01

    A precise analysis model was developed in this paper to investigate the dynamic characteristics of rotating composite blades. An eighteen-node solid-shell finite element was used to model the blade structures. This study is focused on geometrically nonlinear problems, because the material is assumed linear elastic. Incremental total Lagrangian approach was adopted to allow estimations on arbitrarily large rotations and displacements. The equations of motion for the finite element model were derived by using Hamilton's principle, and the resulting nonlinear equilibrium equations were solved by applying Newton-Raphson method combined with load control. A modified stress-strain relation was adopted to avoid the transverse shear locking problem, and fairly reliable results were obtained with no sign of locking phenomenon. The obtained numerical results were compared to several benchmark problems, and the results show a good correlation with the experimental data and other finite element analysis results. The vibration characteristics of shell- and beam-type blades were investigated. For shell-type blades, the dynamic characteristics may be significantly influenced by blade curvature, pre-twist, and geometric nonlinearity. For beam-type blades, one-dimensional beam and three-dimensional solid models offer comparable predictions for the straight and large aspect ratio blade. As blade aspect ratio decreases, considerable differences appear in the bending and torsion modes. The tip sweep angle tends to decrease the flap bending frequencies, but the torsion frequency increases with the tip sweep angle.

  12. An intelligent three dimensional reconstruction system for cerebral arteries from biplane cineangiograms

    International Nuclear Information System (INIS)

    Fujii, Susumu; Guan, Yang; Tsukamoto, Yasuo; Kumamoto, Etsuko; Asada, Katsunobu; Matsuo, Michimasa; Yamasaki, Katsuhito.

    1993-01-01

    In this study, an intelligent system is developed for the three dimensional reconstruction of cerebral arteries from biplane cineangiograms. The system is composed of two blocks, i.e., an inferencing-control-block and a processing-block. The inferencing-control block controls the flow of the image-processing by inferencing with the knowledge stored in the block and is a production system based on 'IF, THEN' rule. The processing-block is a collection of image processing procedures activated by a call from the inferencing-control-block. On the other hand, the flow of the image-processing is outlined as follows: After the extraction of vessel center lines from the angiograms, the blood flow directions and connectivity states of vessels are determined and the vessel graph is translated to a vessel connectivity tree. Then, by utilizing the knowledge about anatomic structure of cerebral arteries and characteristics of angiograms, important arteries are distinguished and vessel groups classified. Finally, by using a shape-oriented matching method, the vessels on the two projected planes are matched and the three dimensional structure of vessels constructed. An example is presented to demonstrate the effectiveness of the use of the knowledge which enables the system to improve the efficiency and precision of the processing, such as vessel analysis and matching. (author)

  13. An intelligent three dimensional reconstruction system for cerebral arteries from biplane cineangiograms

    Energy Technology Data Exchange (ETDEWEB)

    Fujii, Susumu (Kobe Univ. (Japan). Faculty of Engineering); Guan, Yang; Tsukamoto, Yasuo; Kumamoto, Etsuko; Asada, Katsunobu; Matsuo, Michimasa; Yamasaki, Katsuhito

    1993-12-01

    In this study, an intelligent system is developed for the three dimensional reconstruction of cerebral arteries from biplane cineangiograms. The system is composed of two blocks, i.e., an inferencing-control-block and a processing-block. The inferencing-control block controls the flow of the image-processing by inferencing with the knowledge stored in the block and is a production system based on 'IF, THEN' rule. The processing-block is a collection of image processing procedures activated by a call from the inferencing-control-block. On the other hand, the flow of the image-processing is outlined as follows: After the extraction of vessel center lines from the angiograms, the blood flow directions and connectivity states of vessels are determined and the vessel graph is translated to a vessel connectivity tree. Then, by utilizing the knowledge about anatomic structure of cerebral arteries and characteristics of angiograms, important arteries are distinguished and vessel groups classified. Finally, by using a shape-oriented matching method, the vessels on the two projected planes are matched and the three dimensional structure of vessels constructed. An example is presented to demonstrate the effectiveness of the use of the knowledge which enables the system to improve the efficiency and precision of the processing, such as vessel analysis and matching. (author).

  14. Wrist CT and three-dimensional reconstruction: Direct coronal versus transaxial scanning

    International Nuclear Information System (INIS)

    Biondetti, P.R.; Vannier, M.W.; Gilula, L.A.; Knapp, R.H.

    1986-01-01

    Because of its three-dimensional complexity, the wrist cannot be completely examined radiographically without CT. Complex carpal fractures, intercarpal and distal radioulnar dislocations or subluxations, late sequelae of trauma (nonunion, osteonecrosis, degenerative changes, infections), and the painful wrist with normal plain film and abnormal bone scan appearance have been evaluated with CT. In the majority of cases reported in the literature, the wrist was scanned by CT in the transaxial plane. The author compared direct transaxial and coronal CT scanning in 23 patients with wrist disorders. Axial sections were superior for distal radioulnar subluxation, hamate hook fractures, and for the ventral trapezial tubercle not shown on routine radiographs. Coronal scanning, performed using a specially designed wrist fixture, was preferable for most other wrist CT examinations. Coronal wrist CT offers perpendicular orientation for the majority of the carpal joints, anatomic display similar to that of plain film radiography, and fewer scans per wrist CT examination. Three-dimensional surface reconstruction wrist images were better when coronal rather than transaxial scans were used as input. Direct coronal CT should be the method of choice for most patients with wrist problems

  15. Characterization of a saphenous vein graft aneurysm by intravascular ultrasound and computerized three-dimensional reconstruction.

    Science.gov (United States)

    Ennis, B M; Zientek, D M; Ruggie, N T; Billhardt, R A; Klein, L W

    1993-04-01

    Aneurysmal dilatations in saphenous vein grafts are rare complications of coronary artery bypass surgery that mostly represent thin-wall pseudoaneurysms at anastomotic sites. We describe a case of an enlarging distal saphenous vein graft aneurysm in which intravascular ultrasound (IVUS) and computerized three-dimensional reconstruction (3DR) of the IVUS images was performed to conclusively demonstrate true aneurysm morphology. Although both atherosclerotic and nonatherosclerotic mechanisms for vein graft aneurysm formation have been previously suggested, IVUS images and 3DR of the aneurysm in this case did not reveal any of the features typical for atherosclerotic lesions. Further, the IVUS images and 3DR suggest that progressive atherosclerosis is not the likely cause of aneurysm formation in this case. This application of IVUS and 3DR provides detailed information about saphenous vein graft aneurysm structure, clues to aneurysm formation, and suggests a natural history that may differ from that of pseudoaneurysms.

  16. Automated seed detection and three-dimensional reconstruction. I. Seed localization from fluoroscopic images or radiographs

    International Nuclear Information System (INIS)

    Tubic, Dragan; Zaccarin, Andre; Pouliot, Jean; Beaulieu, Luc

    2001-01-01

    An automated procedure for the detection of the position and the orientation of radioactive seeds on fluoroscopic images or scanned radiographs is presented. The extracted positions of seed centers and the orientations are used for three-dimensional reconstruction of permanent prostate implants. The extraction procedure requires several steps: correction of image intensifier distortions, normalization, background removal, automatic threshold selection, thresholding, and finally, moment analysis and classification of the connected components. The algorithm was tested on 75 fluoroscopic images. The results show that, on average, 92% of the seeds are detected automatically. The orientation is found with an error smaller than 5 deg. for 75% of the seeds. The orientation of overlapping seeds (10%) should be considered as an estimate at best. The image processing procedure can also be used for seed or catheter detection in CT images, with minor modifications

  17. System and method for three-dimensional image reconstruction using an absolute orientation sensor

    KAUST Repository

    Giancola, Silvio

    2018-01-18

    A three-dimensional image reconstruction system includes an image capture device, an inertial measurement unit (IMU), and an image processor. The image capture device captures image data. The inertial measurement unit (IMU) is affixed to the image capture device and records IMU data associated with the image data. The image processor includes one or more processing units and memory for storing instructions that are executed by the one or more processing units, wherein the image processor receives the image data and the IMU data as inputs and utilizes the IMU data to pre-align the first image and the second image, and wherein the image processor utilizes a registration algorithm to register the pre-aligned first and second images.

  18. Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL.

    Science.gov (United States)

    Nakano, Miki; Miyashita, Osamu; Jonic, Slavica; Song, Changyong; Nam, Daewoong; Joti, Yasumasa; Tama, Florence

    2017-07-01

    The three-dimensional (3D) structural analysis of single particles using an X-ray free-electron laser (XFEL) is a new structural biology technique that enables observations of molecules that are difficult to crystallize, such as flexible biomolecular complexes and living tissue in the state close to physiological conditions. In order to restore the 3D structure from the diffraction patterns obtained by the XFEL, computational algorithms are necessary as the orientation of the incident beam with respect to the sample needs to be estimated. A program package for XFEL single-particle analysis based on the Xmipp software package, that is commonly used for image processing in 3D cryo-electron microscopy, has been developed. The reconstruction program has been tested using diffraction patterns of an aerosol nanoparticle obtained by tomographic coherent X-ray diffraction microscopy.

  19. Three-dimensional breast image reconstruction from a limited number of views

    Science.gov (United States)

    McCauley, Thomas G.; Stewart, Alexander X.; Stanton, Martin J.; Wu, Tao; Phillips, Walter C.

    2000-04-01

    Typically in three-dimensional (3D) computed tomography (CT) imaging, hundreds or thousands of x-ray projection images are recorded. The image-collection time and patient dose required rule out conventional CT as a tool for screening mammography. We have developed a CT method that overcomes these limitations by using (1) a novel image collection geometry, (2) new digital electronic x-ray detector technology, and (3) modern image reconstruction procedures. The method, which we call Computed Planar Mammography (CPM), is made possible by the full-field, low-noise, high-resolution CCD-based detector design that we have previously developed. With this method, we need to record only a limited number (10 - 50) of low-dose x- ray images of the breast. The resulting 3D full breast image has a resolution in two orientations equal to the full detector resolution (47 microns), and a lower, variable resolution (0.5 - 10 mm) in the third orientation. This 3D reconstructed image can then be viewed as a series of cross- sectional layers, or planes, each at the full detector resolution. Features due to overlapping tissue, which could not be differentiated in a conventional mammogram, are separated into layers at different depths. We demonstrate the features and capabilities of this method by presenting reconstructed images of phantoms and mastectomy specimens. Finally, we discuss outstanding issues related to the further development of this procedure, as well as considerations for its clinical implementation.

  20. [Acetabular morphological analysis in patients with high dislocated DDH using three-dimensional surface reconstruction technique].

    Science.gov (United States)

    Zengy, Yi; Min, Li; Lai, Ou-jie; Shen, Bin; Yang, Jing; Zhou, Zong-ke; Kang, Peng-de; Pei, Fu-xing

    2015-03-01

    To simulate acetabular morphology and perform acetabular quantitative analysis in high dislocated developmental dysplasia of the hip (DDH) patients using three-dimensional (3D) surface reconstruction technique, in order to understand the acetabular anatomic features and develop operative strategies for acetabular reconstruction. 3D pelvic images were reconstructed by Mimics software from CT data of 13 patients (13 hips) with high developmental DDH and 13 normal persons (26 hips). True acetabular superior-inferior diameter, anterior-posterior diameter, acetabular depth, medial wall thickness, abduction angle and anteversion angle were measured and compared between the two groups of participants. Irregular acetabular shape was found in high dislocated group, showing a triangle with wide upper and narrow lower. The acetabular quantitative analysis revealed (38.29 +/- 2.71) mm superior-inferior diameter, (21.74 +/- 5.33) mm anterior-posterior diameter, (15.50 +/- 2.93) mm acetabular depth, (6.80 +/- 2.97) mm medial wall thickness, (49.29 +/- 7.40) degrees abduction angle and (23.82 +/- 11.21) degrees anteversion angle in high dislocated patients. The superior-inferior diameter, anterior-posterior diameter and acetabular depth of high dislocated patients were significantly smaller than those of the normal contirols (PDDH patients have acetabular features: irregular shape, lower opening, higher medial wall and bigger abduction and anteversion angles. Joint arthroplasty surgery in high dislocated DDH patients needs to look at these acetabular features.

  1. Effective one-dimensional approach to the source reconstruction problem of three-dimensional inverse optoacoustics.

    Science.gov (United States)

    Stritzel, J; Melchert, O; Wollweber, M; Roth, B

    2017-09-01

    The direct problem of optoacoustic signal generation in biological media consists of solving an inhomogeneous three-dimensional (3D) wave equation for an initial acoustic stress profile. In contrast, the more defiant inverse problem requires the reconstruction of the initial stress profile from a proper set of observed signals. In this article, we consider an effectively 1D approach, based on the assumption of a Gaussian transverse irradiation source profile and plane acoustic waves, in which the effects of acoustic diffraction are described in terms of a linear integral equation. The respective inverse problem along the beam axis can be cast into a Volterra integral equation of the second kind for which we explore here efficient numerical schemes in order to reconstruct initial stress profiles from observed signals, constituting a methodical progress of computational aspects of optoacoustics. In this regard, we explore the validity as well as the limits of the inversion scheme via numerical experiments, with parameters geared toward actual optoacoustic problem instances. The considered inversion input consists of synthetic data, obtained in terms of the effectively 1D approach, and, more generally, a solution of the 3D optoacoustic wave equation. Finally, we also analyze the effect of noise and different detector-to-sample distances on the optoacoustic signal and the reconstructed pressure profiles.

  2. Computer-Assisted Reconstruction and Motion Analysis of the Three-Dimensional Cell

    Directory of Open Access Journals (Sweden)

    David R. Soll

    2003-01-01

    Full Text Available Even though several microscopic techniques provide three-dimensional (3D information on fixed and living cells, the perception persists that cells are two-dimensional (2D. Cells are, in fact, 3D and their behavior, including the extension of pseudopods, includes an important 3D component. Although treating the cell as a 2D entity has proven effective in understanding how cells locomote, and in identifying defects in a variety of mutant and abnormal cells, there are cases in which 3D reconstruction and analysis are essential. Here, we describe advanced computer-assisted 3D reconstruction and motion analysis programs for both individual live, crawling cells and developing embryos. These systems (3D-DIAS, 3D-DIASemb can be used to reconstruct and motion analyze at short time intervals the nucleus and pseudopodia as well as the entire surface of a single migrating cell, or every cell and nucleus in a developing embryo. Because all images are converted to mathematical representations, a variety of motility and dynamic morphology parameters can be computed that have proven quite valuable in the identification of mutant behaviors. We also describe examples of mutant behaviors in Dictyostelium that were revealed through 3D analysis.

  3. Stereo-vision three-dimensional reconstruction of curvilinear structures imaged with a TEM.

    Science.gov (United States)

    Oveisi, Emad; Letouzey, Antoine; De Zanet, Sandro; Lucas, Guillaume; Cantoni, Marco; Fua, Pascal; Hébert, Cécile

    2018-01-01

    Deriving accurate three-dimensional (3-D) structural information of materials at the nanometre level is often crucial for understanding their properties. Tomography in transmission electron microscopy (TEM) is a powerful technique that provides such information. It is however demanding and sometimes inapplicable, as it requires the acquisition of multiple images within a large tilt arc and hence prolonged exposure to electrons. In some cases, prior knowledge about the structure can tremendously simplify the 3-D reconstruction if incorporated adequately. Here, a novel algorithm is presented that is able to produce a full 3-D reconstruction of curvilinear structures from stereo pair of TEM images acquired within a small tilt range that spans from only a few to tens of degrees. Reliability of the algorithm is demonstrated through reconstruction of a model 3-D object from its simulated projections, and is compared with that of conventional tomography. This method is experimentally demonstrated for the 3-D visualization of dislocation arrangements in a deformed metallic micro-pillar. Copyright © 2017. Published by Elsevier B.V.

  4. The assessment of orthodontic bonding defects: optical coherence tomography followed by three-dimensional reconstruction

    Science.gov (United States)

    Rominu, R.; Sinescu, C.; Rominu, M.; Negrutiu, M.; Petrescu, E.; Pop, D.; Podoleanu, A. Gh.

    2011-10-01

    Orthodontic bonding is a simple yet important procedure that can influence the outcome of treatment in case it is performed incorrectly. An orthodontic treatment shadowed by repeated bonding failures can become unduly long and will decrease patient trust and compliance. Optical coherence tomography has been widely used in ophtalmology but is relatively new to dentistry. Using OCT one can detect aerial inclusions within the orthodontic adhesive or even identify incongruence between the bracket base and the tooth surface. The aim of our study was to identify bonding defects and reconstruct them three-dimensionally in order to be able to characterize them more accurately. We bonded 30 sound human permanent teeth with ceramic orthodontic brackets using a no-mix self-curing orthodontic adhesive. Prior to bonding all teeth were stored in tap water at 4°C and then professionally cleaned with rotary brushes and pumice. The samples were processed by the same person and the rotary brushes were changed after every fifth tooth. All interfaces were investigated by means of OCT and 4 defects were found. Subsequently, the defects were reconstructed threedimensionally using an open-source program. By identifying and reconstructing bonding defects we could assess the quality of the bonding procedure. Since bonding tends to be more accurate in vitro where the environmental conditions are close to ideal, it is probable that defects found in vivo be even greater in number, which leads to the conclusion that this type of investigation is potentially valuable.

  5. Effective one-dimensional approach to the source reconstruction problem of three-dimensional inverse optoacoustics

    Science.gov (United States)

    Stritzel, J.; Melchert, O.; Wollweber, M.; Roth, B.

    2017-09-01

    The direct problem of optoacoustic signal generation in biological media consists of solving an inhomogeneous three-dimensional (3D) wave equation for an initial acoustic stress profile. In contrast, the more defiant inverse problem requires the reconstruction of the initial stress profile from a proper set of observed signals. In this article, we consider an effectively 1D approach, based on the assumption of a Gaussian transverse irradiation source profile and plane acoustic waves, in which the effects of acoustic diffraction are described in terms of a linear integral equation. The respective inverse problem along the beam axis can be cast into a Volterra integral equation of the second kind for which we explore here efficient numerical schemes in order to reconstruct initial stress profiles from observed signals, constituting a methodical progress of computational aspects of optoacoustics. In this regard, we explore the validity as well as the limits of the inversion scheme via numerical experiments, with parameters geared toward actual optoacoustic problem instances. The considered inversion input consists of synthetic data, obtained in terms of the effectively 1D approach, and, more generally, a solution of the 3D optoacoustic wave equation. Finally, we also analyze the effect of noise and different detector-to-sample distances on the optoacoustic signal and the reconstructed pressure profiles.

  6. Three-dimensional reconstruction of fracture surfaces of CFRP type composite materials

    International Nuclear Information System (INIS)

    Lobo, Raquel de Moraes

    2009-01-01

    The three-dimensional reconstruction of fracture surfaces of CFRP type composite materials is presented in this work as a possible method for the fractographic analysis of this material, whose rupture surface can present an accentuated roughness, with great variation in height. Two methods are presented for this purpose: the reconstruction for variable focus, carried through with images of optic microscopy and the reconstruction for parallax, carried through with pair of stereo images, obtained by means of scanning electronic microscopy. An evaluation is carried through for each one of the two methods, having argued its limits and the efficiency of each one of them, before the difficulties of analysis of unidirectional and multidirectional composite materials. The method of variable focus presented an excellent reconstruction result, but it has the need of a great number of images, spent time of the instrument and magnifying limit of the images as factors to be considered in the choice of better method. The tilting of the specimen, during the parallax method, discloses alterations in the histograms of the images acquired in the clockwise direction that limit the use of the method for materials with high roughness. The acquiring of images in only one direction and the construction of a region of interest, located in the center of the image are suggestions to turn the method most including. The linearity of the projections of features in the inclined image also suggests the possibility to carry through the reconstruction using, instead of only two, multiple images gotten in the counter-clockwise direction. The alterations proposals to modify the routine, are suggested so that the program can be applied in a more comprehensive form, independent of the quality of the observed fracture surface. (author)

  7. Verifying three-dimensional skull model reconstruction using cranial index of symmetry.

    Directory of Open Access Journals (Sweden)

    Woon-Man Kung

    Full Text Available BACKGROUND: Difficulty exists in scalp adaptation for cranioplasty with customized computer-assisted design/manufacturing (CAD/CAM implant in situations of excessive wound tension and sub-cranioplasty dead space. To solve this clinical problem, the CAD/CAM technique should include algorithms to reconstruct a depressed contour to cover the skull defect. Satisfactory CAM-derived alloplastic implants are based on highly accurate three-dimensional (3-D CAD modeling. Thus, it is quite important to establish a symmetrically regular CAD/CAM reconstruction prior to depressing the contour. The purpose of this study is to verify the aesthetic outcomes of CAD models with regular contours using cranial index of symmetry (CIS. MATERIALS AND METHODS: From January 2011 to June 2012, decompressive craniectomy (DC was performed for 15 consecutive patients in our institute. 3-D CAD models of skull defects were reconstructed using commercial software. These models were checked in terms of symmetry by CIS scores. RESULTS: CIS scores of CAD reconstructions were 99.24±0.004% (range 98.47-99.84. CIS scores of these CAD models were statistically significantly greater than 95%, identical to 99.5%, but lower than 99.6% (p<0.001, p = 0.064, p = 0.021 respectively, Wilcoxon matched pairs signed rank test. These data evidenced the highly accurate symmetry of these CAD models with regular contours. CONCLUSIONS: CIS calculation is beneficial to assess aesthetic outcomes of CAD-reconstructed skulls in terms of cranial symmetry. This enables further accurate CAD models and CAM cranial implants with depressed contours, which are essential in patients with difficult scalp adaptation.

  8. Clinical application of the three-dimensional reconstruction of spiral CT pneumocolon

    International Nuclear Information System (INIS)

    Yu Shenping; Li Ziping; Xu Dasheng; Lin Erjian; Lin Peizhang; Xu Qiaolan

    2000-01-01

    Objective: To evaluate the clinical role of the 3 types of reconstruction of the spiral CT pneumocolon in the diagnosis of colon lesions. Methods: Three types of reconstruction with spiral CT pneumocolon including air cast imaging (ACI), CT virtual endoscopy (CTVE), and multiple planner reconstruction (MPR) in 34 patients with colorectal cancer or polyps were correlated with surgical pathology respectively. Results: Among the 34 patients, 30 was colorectal cancer and 6 was polyps (2 of which in the proximal lumen of 2 colon cancer). (1) Comparison between the 3 types of the spiral CT pneumocolon reconstruction and pathology in colorectal cancer. 1) ACI: tumor patterns: coincide (n =22), anti-coincide (n = 8); tumor extension: coincide (n = 24), anti-coincide (n = 6); tumor size: coincide (n = 28), anti-coincide (n = 2). 2) CTVE: tumor patterns: coincide (n = 26), anti-coincide (n = 4); tumor extension: coincide (n = 25), anti-coincide ( n 5); tumor size: coincide (n = 23), anti-coincide (n = 7). 3) MPR: tumor patterns: coincide (n = 24), anti-coincide (n = 6); tumor extension: coincide (n = 30), anti-coincide (n = 0); tumor size: coincide (n = 26), anti-coincide (n = 4). (2) Comparison between the 3 types of the spiral CT pneumocolon reconstruction and pathology in colorectal polyps: the lesions were displayed in 4 (ACI) and in 6 (CTVE and MPR). Conclusion: (1) For the diagnosis of colorectal cancers: CTVE was the best means to display the tumor patterns, MPR most correct to judge the tumor extension, and ACI most suitable to measure the tumor size. (2) For the diagnosis of colorectal polyps, ACI can be used for oriented diagnosis, CTVE can well display the intra-luminal three-dimensional structure and can be used for characteristic diagnosis, MPR can be used for differential diagnosis

  9. Colour-coded three-dimensional reconstruction from spiral CT data sets: Improvement from the physical point of view

    International Nuclear Information System (INIS)

    Wunderlich, A.P.; Lenz, M.; Kirsten, R.; Gerhardt, P.

    1993-01-01

    This paper demonstrates the possibility of improving the spatial depth impression of colour-coded three-dimensional reconstructions by modulation of colour saturation. Patients were observed with spiral computed tomography (slice thickness 10 mm, table feed 10 mm/s, reconstruction of overlapping axial images at 2 mm increment). Interesting anatomical and pathological objects (vessels, organs, tumours, metastases) were segmented, colour-coded, and reconstructed three-dimensionally. Spatial depth impression of the coloured objects could be improved by modulating not only the brightness, but also the colour saturation. (orig.) [de

  10. The advantages of advanced computer-assisted diagnostics and three-dimensional preoperative planning on implant position in orbital reconstruction.

    Science.gov (United States)

    Jansen, Jesper; Schreurs, Ruud; Dubois, Leander; Maal, Thomas J J; Gooris, Peter J J; Becking, Alfred G

    2018-02-26

    Advanced three-dimensional (3D) diagnostics and preoperative planning are the first steps in computer-assisted surgery (CAS). They are an integral part of the workflow, and allow the surgeon to adequately assess the fracture and to perform virtual surgery to find the optimal implant position. The goal of this study was to evaluate the accuracy and predictability of 3D diagnostics and preoperative virtual planning without intraoperative navigation in orbital reconstruction. In 10 cadaveric heads, 19 complex orbital fractures were created. First, all fractures were reconstructed without preoperative planning (control group) and at a later stage the reconstructions were repeated with the help of preoperative planning. Preformed titanium mesh plates were used for the reconstructions by two experienced oral and maxillofacial surgeons. The preoperative virtual planning was easily accessible for the surgeon during the reconstruction. Computed tomographic scans were obtained before and after creation of the orbital fractures and postoperatively. Using a paired t-test, implant positioning accuracy (translation and rotations) of both groups were evaluated by comparing the planned implant position with the position of the implant on the postoperative scan. Implant position improved significantly (P preoperative planning (Table 1). Pitch did not improve significantly (P = 0.78). The use of 3D diagnostics and preoperative planning without navigation in complex orbital wall fractures has a positive effect on implant position. This is due to a better assessment of the fracture, the possibility of virtual surgery and because the planning can be used as a virtual guide intraoperatively. The surgeon has more control in positioning the implant in relation to the rim and other bony landmarks. Copyright © 2018 European Association for Cranio-Maxillo-Facial Surgery. Published by Elsevier Ltd. All rights reserved.

  11. Dual-spacecraft reconstruction of a three-dimensional magnetic flux rope at the Earth's magnetopause

    Directory of Open Access Journals (Sweden)

    H. Hasegawa

    2015-02-01

    Full Text Available We present the first results of a data analysis method, developed by Sonnerup and Hasegawa (2011, for reconstructing three-dimensional (3-D, magnetohydrostatic structures from data taken as two closely spaced satellites traverse the structures. The method is applied to a magnetic flux transfer event (FTE, which was encountered on 27 June 2007 by at least three (TH-C, TH-D, and TH-E of the five THEMIS probes near the subsolar magnetopause. The FTE was sandwiched between two oppositely directed reconnection jets under a southward interplanetary magnetic field condition, consistent with its generation by multiple X-line reconnection. The recovered 3-D field indicates that a magnetic flux rope with a diameter of ~ 3000 km was embedded in the magnetopause. The FTE flux rope had a significant 3-D structure, because the 3-D field reconstructed from the data from TH-C and TH-D (separated by ~ 390 km better predicts magnetic field variations actually measured along the TH-E path than does the 2-D Grad–Shafranov reconstruction using the data from TH-C (which was closer to TH-E than TH-D and was at ~ 1250 km from TH-E. Such a 3-D nature suggests that the field lines reconnected at the two X-lines on both sides of the flux rope are entangled in a complicated way through their interaction with each other. The generation process of the observed 3-D flux rope is discussed on the basis of the reconstruction results and the pitch-angle distribution of electrons observed in and around the FTE.

  12. Three-dimensional graphic reconstruction of the insect exoskeleton through confocal imaging of endogenous fluorescence.

    Science.gov (United States)

    Zill, S; Frazier, S F; Neff, D; Quimby, L; Carney, M; DiCaprio, R; Thuma, J; Norton, M

    2000-03-15

    The exoskeleton of the cockroach leg was imaged via confocal microscopy to generate digital graphic reconstructions of its three-dimensional structure. The cuticle is autofluorescent and can be visualized without staining, but is maximally imaged in aldehyde-fixed preparations viewed under krypton-argon laser illumination (yellow green (568 nm) excitation, commonly used in confocal microscopes). Images of the entire trochanteral segment of the leg were constructed as montages from optical sections taken as overlapping series that were coincident in the z-axis. Reconstructions of the exoskeleton from these images showed that strain sensing mechanoreceptors are located in association with buttresses and thickenings that form a consistent internal architecture in both juvenile and adult animals. Accuracy of reconstructions was gauged by embedding specimens in Spurr's resin and histologically sectioning them perpendicular to the optical plane of section (z-axis). Comparison of plastic sections with two-dimensional images generated by "resectioning" the software model showed that reconstructed exoskeleton had a high level of accuracy. Imaging of older and larger animals was limited by the sclerotization and increased thickness of the cuticle. Surface extraction algorithms were used to generate vector graphic files in CAD format for export to software used in engineering and design. Among other potential uses, these models have been studied by Finite Element Analysis to examine the distribution of mechanical strains in the exoskeleton that occur during posture and locomotion. The advantages and limitations of the techniques are discussed. These methods may be used in studying the exoskeleton and the anatomy of cuticular mechanoreceptors of other arthropods to similar advantage. Copyright 2000 Wiley-Liss, Inc.

  13. Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Weizhao; Ginsberg, M. (Univ. of Miami, FL (United States). Cerebral Vascular Disease Research Center); Young, T.Y. (Univ. of Miami, Coral Gables, FL (United States). Dept. of Electrical and Computer Engineering)

    1993-12-01

    Quantitative autoradiography is a powerful radio-isotopic-imaging method for neuroscientists to study local cerebral blood flow and glucose-metabolic rate at rest, in response to physiologic activation of the visual, auditory, somatosensory, and motor systems, and in pathologic conditions. Most autoradiographic studies analyze glucose utilization and blood flow in two-dimensional (2-D) coronal sections. With modern digital computer and image-processing techniques, a large number of closely spaced coronal sections can be stacked appropriately to form a three-dimensional (3-d) image. 3-D autoradiography allows investigators to observe cerebral sections and surfaces from any viewing angle. A fundamental problem in 3-D reconstruction is the alignment (registration) of the coronal sections. A new alignment method based on disparity analysis is presented which can overcome many of the difficulties encountered by previous methods. The disparity analysis method can deal with asymmetric, damaged, or tilted coronal sections under the same general framework, and it can be used to match coronal sections of different sizes and shapes. Experimental results on alignment and 3-D reconstruction are presented.

  14. Three-dimensional reconstruction volume: a novel method for volume measurement in kidney cancer.

    Science.gov (United States)

    Durso, Timothy A; Carnell, Jonathan; Turk, Thomas T; Gupta, Gopal N

    2014-06-01

    The role of volumetric estimation is becoming increasingly important in the staging, management, and prognostication of benign and cancerous conditions of the kidney. We evaluated the use of three-dimensional reconstruction volume (3DV) in determining renal parenchymal volumes (RPV) and renal tumor volumes (RTV). We compared 3DV with the currently available methods of volume assessment and determined its interuser reliability. RPV and RTV were assessed in 28 patients who underwent robot-assisted laparoscopic partial nephrectomy for kidney cancer. Patients with a preoperative creatinine level of kidney pre- and postsurgery overestimated 3D reconstruction volumes by 15% to 102% and 12% to 101%, respectively. In addition, volumes obtained from 3DV displayed high interuser reliability regardless of experience. 3DV provides a highly reliable way of assessing kidney volumes. Given that 3DV takes into account visible anatomy, the differences observed using previously published methods can be attributed to the failure of geometry to accurately approximate kidney or tumor shape. 3DV provides a more accurate, reproducible, and clinically useful tool for urologists looking to improve patient care using analysis related to volume.

  15. A Three-Dimensional Reconstructive Study of Pelvic Cavity in the New Zealand Rabbit (Oryctolagus cuniculus

    Directory of Open Access Journals (Sweden)

    Sema Özkadif

    2014-01-01

    Full Text Available The present study has been performed to reveal biometrical aspects and diameter-related differences in terms of sexes regarding pelvic cavity via three-dimensional (3D reconstruction by using multidetector computed tomography (MDCT images of pelvic cavity of the New Zealand rabbit. A total of 16 adult New Zealand rabbits, including 8 males and 8 females, were used in this study. Under anesthesia, the images obtained from MDCT were stacked and overlaid to reconstruct the 3D model of the pelvic cavity using 3D modeling software (Mimics 13.1. Measurements, such as the conjugate, transverse, and vertical diameters of the pelvic cavity, and the pelvic inclination were calculated and analyzed statistically. Biometrical differences of the pelvic diameters in New Zealand rabbits of both sexes were shown clearly. It was concluded that the pelvic diameters revealed by 3D modeling techniques can shed light on medical students who take both anatomy training and gynecological applications. The authors hope that the synchronization of medical approaches may give rise to novel diagnostic and therapeutic developments related to pelvic cavity.

  16. Fuzzy B-spline optimization for urban slum three-dimensional reconstruction using ENVISAT satellite data

    Science.gov (United States)

    Marghany, Maged

    2014-06-01

    A critical challenges in urban aeras is slums. In fact, they are considered a source of crime and disease due to poor-quality housing, unsanitary conditions, poor infrastructures and occupancy security. The poor in the dense urban slums are the most vulnerable to infection due to (i) inadequate and restricted access to safety, drinking water and sufficient quantities of water for personal hygiene; (ii) the lack of removal and treatment of excreta; and (iii) the lack of removal of solid waste. This study aims to investigate the capability of ENVISAT ASAR satellite and Google Earth data for three-dimensional (3-D) slum urban reconstruction in developed countries such as Egypt. The main objective of this work is to utilize some 3-D automatic detection algorithm for urban slum in ENVISAT ASAR and Google Erath images were acquired in Cairo, Egypt using Fuzzy B-spline algorithm. The results show that the fuzzy algorithm is the best indicator for chaotic urban slum as it can discriminate between them from its surrounding environment. The combination of Fuzzy and B-spline then used to reconstruct 3-D of urban slum. The results show that urban slums, road network, and infrastructures are perfectly discriminated. It can therefore be concluded that the fuzzy algorithm is an appropriate algorithm for chaotic urban slum automatic detection in ENVSIAT ASAR and Google Earth data.

  17. Fuzzy B-spline optimization for urban slum three-dimensional reconstruction using ENVISAT satellite data

    International Nuclear Information System (INIS)

    Marghany, Maged

    2014-01-01

    A critical challenges in urban aeras is slums. In fact, they are considered a source of crime and disease due to poor-quality housing, unsanitary conditions, poor infrastructures and occupancy security. The poor in the dense urban slums are the most vulnerable to infection due to (i) inadequate and restricted access to safety, drinking water and sufficient quantities of water for personal hygiene; (ii) the lack of removal and treatment of excreta; and (iii) the lack of removal of solid waste. This study aims to investigate the capability of ENVISAT ASAR satellite and Google Earth data for three-dimensional (3-D) slum urban reconstruction in developed countries such as Egypt. The main objective of this work is to utilize some 3-D automatic detection algorithm for urban slum in ENVISAT ASAR and Google Erath images were acquired in Cairo, Egypt using Fuzzy B-spline algorithm. The results show that the fuzzy algorithm is the best indicator for chaotic urban slum as it can discriminate between them from its surrounding environment. The combination of Fuzzy and B-spline then used to reconstruct 3-D of urban slum. The results show that urban slums, road network, and infrastructures are perfectly discriminated. It can therefore be concluded that the fuzzy algorithm is an appropriate algorithm for chaotic urban slum automatic detection in ENVSIAT ASAR and Google Earth data

  18. Volumetric three-dimensional reconstruction and segmentation of spectral-domain OCT.

    Science.gov (United States)

    Aaker, Grant D; Gracia, Luis; Myung, Jane S; Borcherding, Vanessa; Banfelder, Jason R; D'Amico, Donald J; Kiss, Szilárd

    2011-07-01

    Despite advances in optical coherence tomography (OCT), three-dimensional (3D) renderings of OCT images remain limited to scanning consecutive two-dimensional (2D) OCT slices. The authors describe a method of reconstructing 2D OCT data for 3D retinal analysis and visualization in a Computer Assisted Virtual Environment (CAVE). Using customized signal processing software, raw data from 2D slice-based spectral-domain OCT images were rendered into high-resolution 3D images for segmentation and quantification analysis. Reconstructed OCT images were projected onto a four-walled space and viewed through stereoscopic glasses, resulting in a virtual reality perception of the retina. These 3D retinal renderings offer a novel method for segmentation and isolation of volumetric images. The ability to manipulate the images in a virtual reality environment allows visualization of complex spatial relationships that may aid our understanding of retinal pathology. More importantly, these 3D retinal renderings can be viewed, manipulated, and analyzed on traditional 2D monitors independent of the CAVE. Copyright 2011, SLACK Incorporated.

  19. Three-dimensional reconstruction of scleral cold thermoreceptors of the cat eye.

    Science.gov (United States)

    Heppelmann, B; Gallar, J; Trost, B; Schmidt, R F; Belmonte, C

    2001-12-10

    Sensory endings that respond to local cooling were identified electrophysiologically in the cat's sclera. Functionally identified scleral thermal fibers were then used to analyze the structural characteristics of cold receptor endings. Four Adelta units sensitive to controlled cooling of their scleral receptive fields were recorded. The receptive areas were mapped, demarcated with pins and examined electron microscopically using extensive three-dimensional reconstructions. The supporting tissue within the receptive areas of cold units consisted of dense collageneous tissue with a small number of blood vessels that were either veins or capillaries. Adelta nerve fibers were found within these tissue blocks presumably corresponding with cold sensitive fibers. Small nerves and single nerve fibers devoid of a perineurium were found in all parts of the tissue, only occasionally passing a blood vessel. The terminal portions showed axonal swellings all along the unmyelinated segment filled with mitochondria, glycogen particles, and some vesicles. About 30% of the terminal axonal membrane is not covered by Schwann cells. In the unmyelinated distal portion, the mitochondrial content ranged from 0.012 to 0.038 microm(3) mitochondrial volume per microm(2) nerve fiber membrane. In comparison with sensory endings in the cat's knee joint, cold receptors in the cat sclera showed many similarities in their three-dimensional structure with polymodal nociceptor endings of the knee joint but contain less mitochondria. This suggests that cold sensory endings do not require specialized cellular processes for the transduction of cold stimuli, as is the case for multimodal transduction and sensitization in the terminal portion of polymodal nociceptors. Copyright 2001 Wiley-Liss, Inc.

  20. Three-dimensional ocular kinematics during eccentric rotations: evidence for functional rather than mechanical constraints.

    Science.gov (United States)

    Angelaki, Dora E

    2003-05-01

    Previous studies have reported that the translational vestibuloocular reflex (TVOR) follows a three-dimensional (3D) kinematic behavior that is more similar to visually guided eye movements, like pursuit, rather than the rotational VOR (RVOR). Accordingly, TVOR rotation axes tilted with eye position toward an eye-fixed reference frame rather than staying relatively fixed in the head like in the RVOR. This difference arises because, contrary to the RVOR where peripheral image stability is functionally important, the TVOR like pursuit and saccades cares to stabilize images on the fovea. During most natural head and body movements, both VORs are simultaneously activated. In the present study, we have investigated in rhesus monkeys the 3D kinematics of the combined VOR during yaw rotation about eccentric axes. The experiments were motivated by and quantitatively compared with the predictions of two distinct hypotheses. According to the first (fixed-rule) hypothesis, an eye-position-dependent torsion is computed downstream of a site for RVOR/TVOR convergence, and the combined VOR axis would tilt through an angle that is proportional to gaze angle and independent of the relative RVOR/TVOR contributions to the total eye movement. This hypothesis would be consistent with the recently postulated mechanical constraints imposed by extraocular muscle pulleys. According to the second (image-stabilization) hypothesis, an eye-position-dependent torsion is computed separately for the RVOR and the TVOR components, implying a processing that takes place upstream of a site for RVOR/TVOR convergence. The latter hypothesis is based on the functional requirement that the 3D kinematics of the combined VOR should be governed by the need to keep images stable on the fovea with slip on the peripheral retina being dependent on the different functional goals of the two VORs. In contrast to the fixed-rule hypothesis, the data demonstrated a variable eye-position-dependent torsion for the

  1. Phase analysis for three-dimensional surface reconstruction of apples using structured-illumination reflectance imaging

    Science.gov (United States)

    Lu, Yuzhen; Lu, Renfu

    2017-05-01

    Three-dimensional (3-D) shape information is valuable for fruit quality evaluation. This study was aimed at developing phase analysis techniques for reconstruction of the 3-D surface of fruit from the pattern images acquired by a structuredillumination reflectance imaging (SIRI) system. Phase-shifted sinusoidal patterns, distorted by the fruit geometry, were acquired and processed through phase demodulation, phase unwrapping and other post-processing procedures to obtain phase difference maps relative to the phase of a reference plane. The phase maps were then transformed into height profiles and 3-D shapes in a world coordinate system based on phase-to-height and in-plane calibrations. A reference plane-based approach, coupled with the curve fitting technique using polynomials of order 3 or higher, was utilized for phase-to-height calibrations, which achieved superior accuracies with the root-mean-squared errors (RMSEs) of 0.027- 0.033 mm for a height measurement range of 0-91 mm. The 3rd-order polynomial curve fitting technique was further tested on two reference blocks with known heights, resulting in relative errors of 3.75% and 4.16%. In-plane calibrations were performed by solving a linear system formed by a number of control points in a calibration object, which yielded a RMSE of 0.311 mm. Tests of the calibrated system for reconstructing the surface of apple samples showed that surface concavities (i.e., stem/calyx regions) could be easily discriminated from bruises from the phase difference maps, reconstructed height profiles and the 3-D shape of apples. This study has laid a foundation for using SIRI for 3-D shape measurement, and thus expanded the capability of the technique for quality evaluation of horticultural products. Further research is needed to utilize the phase analysis techniques for stem/calyx detection of apples, and optimize the phase demodulation and unwrapping algorithms for faster and more reliable detection.

  2. Three-dimensional reconstruction and the phylogeny of extinct chelicerate orders

    Directory of Open Access Journals (Sweden)

    Russell J. Garwood

    2014-11-01

    Full Text Available Arachnids are an important group of arthropods. They are: diverse and abundant; a major constituent of many terrestrial ecosystems; and possess a deep and extensive fossil record. In recent years a number of exceptionally preserved arachnid fossils have been investigated using tomography and associated techniques, providing valuable insights into their morphology. Here we use X-ray microtomography to reconstruct members of two extinct arachnid orders. In the Haptopoda, we demonstrate the presence of ‘clasp-knife’ chelicerae, and our novel redescription of a member of the Phalangiotarbida highlights leg details, but fails to resolve chelicerae in the group due to their small size. As a result of these reconstructions, tomographic studies of three-dimensionally preserved fossils now exist for three of the four extinct orders, and for fossil representatives of several extant ones. Such studies constitute a valuable source of high fidelity data for constructing phylogenies. To illustrate this, here we present a cladistic analysis of the chelicerates to accompany these reconstructions. This is based on a previously published matrix, expanded to include fossil taxa and relevant characters, and allows us to: cladistically place the extinct arachnid orders; explicitly test some earlier hypotheses from the literature; and demonstrate that the addition of fossils to phylogenetic analyses can have broad implications. Phylogenies based on chelicerate morphology—in contrast to molecular studies—have achieved elements of consensus in recent years. Our work suggests that these results are not robust to the addition of novel characters or fossil taxa. Hypotheses surrounding chelicerate phylogeny remain in a state of flux.

  3. Three-dimensional reconstruction and the phylogeny of extinct chelicerate orders

    Science.gov (United States)

    Dunlop, Jason

    2014-01-01

    Arachnids are an important group of arthropods. They are: diverse and abundant; a major constituent of many terrestrial ecosystems; and possess a deep and extensive fossil record. In recent years a number of exceptionally preserved arachnid fossils have been investigated using tomography and associated techniques, providing valuable insights into their morphology. Here we use X-ray microtomography to reconstruct members of two extinct arachnid orders. In the Haptopoda, we demonstrate the presence of ‘clasp-knife’ chelicerae, and our novel redescription of a member of the Phalangiotarbida highlights leg details, but fails to resolve chelicerae in the group due to their small size. As a result of these reconstructions, tomographic studies of three-dimensionally preserved fossils now exist for three of the four extinct orders, and for fossil representatives of several extant ones. Such studies constitute a valuable source of high fidelity data for constructing phylogenies. To illustrate this, here we present a cladistic analysis of the chelicerates to accompany these reconstructions. This is based on a previously published matrix, expanded to include fossil taxa and relevant characters, and allows us to: cladistically place the extinct arachnid orders; explicitly test some earlier hypotheses from the literature; and demonstrate that the addition of fossils to phylogenetic analyses can have broad implications. Phylogenies based on chelicerate morphology—in contrast to molecular studies—have achieved elements of consensus in recent years. Our work suggests that these results are not robust to the addition of novel characters or fossil taxa. Hypotheses surrounding chelicerate phylogeny remain in a state of flux. PMID:25405073

  4. A novel method to determine the potential rotational axis of the mandible during virtual three-dimensional orthognathic surgery.

    Science.gov (United States)

    Dai, Jiewen; Dong, Yuefu; Xin, Pengfei; Hu, Guanghong; Xiao, Chao; Shen, Shunyao; Shen, Steve Guofang

    2013-11-01

    During virtual three-dimensional orthognathic surgery in cases where an overlap or penetrability occurs between the 2 jaws due to the repositioning of the maxillary segment, it is necessary to establish a vertical opening of the mandible to obtain a relatively good relationship with the maxillary segment for the fabrication of an intermediate occlusal splint. However, there are few reports that address the precise definition of the rotational axis of the mandible during virtual surgery. Here, we present the idea that the mandible's movement during virtual three-dimensional orthognathic surgery is similar to hinge movement in vivo and developed a method for locating the geometric center of the three-dimensional condyle using Hypermesh software combined with Mimics software. Subsequently, we defined the rotational axis of the mandible based on the located geometric centers of the bilateral condyles, and the mandible was then rotated around the defined axis from the retruded contact position to mimic the hinge movement. Preliminary results indicated that the presented method could approximately mimic the hinge movement of the mandible with a relatively high accuracy in a three-dimensional environment, which may improve the accuracy of virtual intermediate occlusal splint.

  5. Review of three-dimensional (3D) surface imaging for oncoplastic, reconstructive and aesthetic breast surgery.

    Science.gov (United States)

    O'Connell, Rachel L; Stevens, Roger J G; Harris, Paul A; Rusby, Jennifer E

    2015-08-01

    Three-dimensional surface imaging (3D-SI) is being marketed as a tool in aesthetic breast surgery. It has recently also been studied in the objective evaluation of cosmetic outcome of oncological procedures. The aim of this review is to summarise the use of 3D-SI in oncoplastic, reconstructive and aesthetic breast surgery. An extensive literature review was undertaken to identify published studies. Two reviewers independently screened all abstracts and selected relevant articles using specific inclusion criteria. Seventy two articles relating to 3D-SI for breast surgery were identified. These covered endpoints such as image acquisition, calculations and data obtainable, comparison of 3D and 2D imaging and clinical research applications of 3D-SI. The literature provides a favourable view of 3D-SI. However, evidence of its superiority over current methods of clinical decision making, surgical planning, communication and evaluation of outcome is required before it can be accepted into mainstream practice. Copyright © 2015 Elsevier Ltd. All rights reserved.

  6. Three-dimensional reconstruction of a random fibrous medium: Geometry, transport, and sound absorbing properties.

    Science.gov (United States)

    Luu, Hoang Tuan; Perrot, Camille; Monchiet, Vincent; Panneton, Raymond

    2017-06-01

    The main purpose of this article is to present, within a unified framework, a technique based on numerical homogenization, to model the acoustical properties of real fibrous media from their geometrical characteristics and to compare numerical results with experimental data. The authors introduce a reconstruction procedure for a random fibrous medium and use it as a basis for the computation of its geometrical, transport, and sound absorbing properties. The previously ad hoc "fiber anisotropies" and "volume weighted average radii," used to describe the experimental data on microstructure, are here measured using scanning electron microscopy. The authors show that these parameters, in conjunction with the bulk porosity, contribute to a precise description of the acoustical characteristics of fibrous absorbents. They also lead to an accurate prediction of transport parameters which can be used to predict acoustical properties. The computed values of the permeability and frequency-dependent sound absorption coefficient are successfully compared with permeability and impedance-tube measurements. The authors' results indicate the important effect of fiber orientation on flow properties associated with the different physical properties of fibrous materials. A direct link is provided between three-dimensional microstructure and the sound absorbing properties of non-woven fibrous materials, without the need for any empirical formulae or fitting parameters.

  7. Efficient three-dimensional reconstruction of aquatic vegetation geometry: Estimating morphological parameters influencing hydrodynamic drag

    Science.gov (United States)

    Liénard, Jean; Lynn, Kendra; Strigul, Nikolay; Norris, Benjamin K.; Gatziolis, Demetrios; Mullarney, Julia C.; Bryan, Karin, R.; Henderson, Stephen M.

    2016-09-01

    Aquatic vegetation can shelter coastlines from energetic waves and tidal currents, sometimes enabling accretion of fine sediments. Simulation of flow and sediment transport within submerged canopies requires quantification of vegetation geometry. However, field surveys used to determine vegetation geometry can be limited by the time required to obtain conventional caliper and ruler measurements. Building on recent progress in photogrammetry and computer vision, we present a method for reconstructing three-dimensional canopy geometry. The method was used to survey a dense canopy of aerial mangrove roots, called pneumatophores, in Vietnam's Mekong River Delta. Photogrammetric estimation of geometry required 1) taking numerous photographs at low tide from multiple viewpoints around 1 m2 quadrats, 2) computing relative camera locations and orientations by triangulation of key features present in multiple images and reconstructing a dense 3D point cloud, and 3) extracting pneumatophore locations and diameters from the point cloud data. Step 3) was accomplished by a new 'sector-slice' algorithm, yielding geometric parameters every 5 mm along a vertical profile. Photogrammetric analysis was compared with manual caliper measurements. In all 5 quadrats considered, agreement was found between manual and photogrammetric estimates of stem number, and of number × mean diameter, which is a key parameter appearing in hydrodynamic models. In two quadrats, pneumatophores were encrusted with numerous barnacles, generating a complex geometry not resolved by hand measurements. In remaining cases, moderate agreement between manual and photogrammetric estimates of stem diameter and solid volume fraction was found. By substantially reducing measurement time in the field while capturing in greater detail the 3D structure, photogrammetry has potential to improve input to hydrodynamic models, particularly for simulations of flow through large-scale, heterogenous canopies.

  8. Differential diagnosis of vertical root fractures using reconstructed three-dimensional models of bone defects.

    Science.gov (United States)

    Komatsu, K; Abe, Y; Yoshioka, T; Ishimura, H; Ebihara, A; Suda, H

    2014-01-01

    The purpose of this study was to evaluate the accuracy of diagnosing vertical root fractures (VRFs) by comparing the volume of bone defects in VRFs with those in non-VRFs on reconstructed three-dimensional (3D) models (TDMs) using CBCT. 32 maxillary pre-molars and anterior teeth with radiolucent areas were evaluated on pre-operative CBCT images. Of the 32 teeth, 16 had a fractured root (VRF group) and 16 had a non-fractured root (non-VRF group). The radiolucent area of each tooth was traced in each dimension [mesiodistal, buccolingual and horizontal (the apicoincisal aspect)] by two observers, and 3D images were reconstructed with the Amira(®) software (Visage Imaging Inc., Richmond, Australia). The volume, V, of the TDM was divided into the coronal side and the periapical side at the horizontal slice through the apical foramen, and v was defined as the volume of the coronal side. The values of v/V were calculated for all cases. The Mann-Whitney U test was used to compare values between the VRF group and the non-VRF group (p < 0.05). A receiver operating characteristic (ROC) curve was constructed to select the optimal cut-point. There was a statistically significant difference in the value of v/V between the two groups (p < 0.05). With a cut-point derived from the ROC curve, and the sensitivity, specificity and accuracy of predicting the VRFs were 1.00, 0.75 and 0.88, respectively. Lesions resulting from VRFs can be distinguished from those of non-VRFs on 3D CBCT images with a high degree of accuracy, based on their different 3D shapes.

  9. Three-dimensional reconstruction of Trypanosoma cruzi epimastigotes and organelle distribution along the cell division cycle.

    Science.gov (United States)

    Ramos, Thiago Cesar Prata; Freymüller-Haapalainen, Edna; Schenkman, Sergio

    2011-07-01

    Trypanosoma cruzi is the protozoan that causes Chagas disease. It divides in the insect vector gut or in the cytosol of an infected mammalian cell. T. cruzi has one mitochondrion, one Golgi complex, one flagellum, and one cytostome. Here, we provide three-dimensional (3D) models of this protozoan based on images obtained from serial sections on electron microscopy at different stages of the cell cycle. Ultrathin serial sections were obtained from Epon™ embedded parasites, photographed in a transmission electron microscope, and 3D models were generated using Reconstruct and Blender 3D modeling softwares. The localization and distribution of organelles was evaluated and attributed to specific morphological patterns and deduced by distribution of specific markers by immunofluorescence analysis. The new features found in the 3D reconstructions are (1) the electron-dense chromatin is interconnected leaving an internal space for a centrally located nucleolus; (2) The kinetoplast is accommodated within a separated branch of the tubular and single mitochondrion; (3) The disk shaped kinetoplast, which is the mitochondrial DNA, duplicates from the interior in G2 phase; (4) The mitochondrion faces the external membrane and shrinks to accommodate an enlarged number of cytosolic vesicles from G1 to G2; (5) The cytostome progress from the parasite surface toward the posterior end contouring the kinetoplast and nucleus and retracts during cell cycle. These new observations might help understanding how organelles are formed and distributed in early divergent eukaryotic cells and provides a useful method to understand the organelle distribution in small eukaryotic cells. Copyright © 2011 International Society for Advancement of Cytometry.

  10. Three-dimensional reconstruction of colorectal tumors from serial tissue sections by computer graphics: a preliminary study.

    Science.gov (United States)

    Kikuchi, S; Matsuzaki, H; Kondo, K; Ohtani, Y; Ihara, A; Hiki, Y; Kakita, A; Kuwao, S

    2000-01-01

    We present herein the three-dimensional reconstruction of colorectal tumors, with particular reference to growth pattern into each layer of the colorectal wall, and measurement of tumor volume and surface area. Conventional tissue section images of colorectal tumors were analyzed using a computer graphics analysis program. The two-dimensional extent of invasion by each tumor into each layer of intestinal wall were determined from the images of each section. Based on data from multiple sections, tumor and surrounding normal tissue layers were reconstructed three-dimensionally, and volume and surface area of the tumors were determined. Using this technique, three-dimensional morphology of tumor and tumor progression into colorectal wall could be determined. Volume and surface area of the colon tumor were 4871 mm3 and 1741 mm2, respectively. Volume and surface area of the rectal tumor were 1090 mm3 and 877 mm2, respectively. This technique may provide a new approach for pathological analysis of colorectal carcinoma.

  11. Three-dimensional histopathological reconstruction as a reliable ground truth for prostate cancer studies

    NARCIS (Netherlands)

    Wildeboer, R. R.; Schalk, S. G.; Demi, L.; Wijkstra, H.; Mischi, M.

    2017-01-01

    To validate new imaging modalities for prostate cancer, images must be three-dimensionally correlated with the histological ground truth. In this work, an interpolation algorithm is described to construct a reliable three-dimensional reference from two-dimensional (2D) histological slices. Eight

  12. Uncertainty evaluation for three-dimensional scanning electron microscope reconstructions based on the stereo-pair technique

    DEFF Research Database (Denmark)

    Carli, Lorenzo; Genta, G; Cantatore, Angela

    2011-01-01

    3D-SEM is a method, based on the stereophotogrammetry technique, which obtains three-dimensional topographic reconstructions starting typically from two SEM images, called the stereo-pair. In this work, a theoretical uncertainty evaluation of the stereo-pair technique, according to GUM (Guide to ...

  13. Magnetically guided left ventricular lead implantation based on a virtual three-dimensional reconstructed image of the coronary sinus

    NARCIS (Netherlands)

    M. Rivero-Ayerza (Maximo); E. Jessurun; S. Ramcharitar (Steve); Y. van Belle (Yves); P.W.J.C. Serruys (Patrick); L.J.L.M. Jordaens (Luc)

    2008-01-01

    textabstractAims: Left ventricular (LV) lead implantation is feasible using remote magnetic navigation of a guidewire (Stereotaxis, St Louis, MO, USA). A novel software that performs a three-dimensional (3D) reconstruction of vessels based on two or more angiographic views has been developed

  14. Colon dissection: a new three-dimensional reconstruction tool for computed tomography colonography

    International Nuclear Information System (INIS)

    Roettgen, R.; Fischbach, F.; Plotkin, M.; Herzog, H.; Freund, T.; Schroeder, R. J.; Felix, R.

    2005-01-01

    Purpose: To improve the sensitivity of computed tomography (CT) colonography in the detection of polyps by comparing the 3D reconstruction tool 'colon dissection' and endoluminal view (virtual colonoscopy) with axial 2D reconstructions. Material and Methods: Forty-eight patients (22 M, 26 F, mean age 57±21) were studied after intra-anal air insufflation in the supine and prone positions using a 16-slice helical CT (16x0.625 mm, pitch 1.7; detector rotation time 0.5 s; 160 mAs und 120 kV) and conventional colonoscopy. Two radiologists blinded to the results of the conventional colonoscopy analyzed the 3D reconstruction in virtual-endoscopy mode, in colon-dissection mode, and axial 2D slices. Results: Conventional colonoscopy revealed a total of 35 polyps in 15 patients; 33 polyps were disclosed by CT methods. Sensitivity and specificity for detecting colon polyps were 94% and 94%, respectively, when using the 'colon dissection', 89% and 94% when using 'virtual endoscopy', and 62% and 100% when using axial 2D reconstruction. Sensitivity in relation to the diameter of colon polyps with 'colon dissection', 'virtual colonoscopy', and axial 2D-slices was: polyps with a diameter >5.0 mm, 100%, 100%, and 71%, respectively; polyps with a diameter of between 3 and 4.9 mm, 92%, 85%, and 46%; and polyps with a diameter <3 mm, 89%, 78%, and 56%. The difference between 'virtual endoscopy' and 'colon dissection' in diagnosing polyps up to 4.9 mm in diameter was statistically significant. Conclusion: 3D reconstruction software 'colon dissection' improves sensitivity of CT colonography compared with the endoluminal view

  15. Quantitative Assessment of the Rat Intrahepatic Biliary System by Three-Dimensional Reconstruction

    Science.gov (United States)

    Masyuk, Tatyana V.; Ritman, Erik L.; LaRusso, Nicholas F.

    2001-01-01

    The anatomical details of the biliary tree architecture of normal rats and rats in whom selective proliferation was induced by feeding α-naphthylisothiocyanate (ANIT) were reconstructed in three dimension using a microscopic-computed tomography scanner. The intrahepatic biliary tree was filled with a silicone polymer through the common bile duct and each liver lobe embedded in Bioplastic; specimens were then scanned by a microscopic-computed tomography scanner and modified Feldkamp cone beam backprojection algorithm applied to generate three-dimensional images. Quantitative analysis of bile duct geometry was performed using a customized software program. The diameter of the bile duct segments of normal and ANIT-fed rats progressively decreased with increasing length of the biliary tree. Diameter of bile ducts from ANIT-fed rats (range, 21 to 264 μm) was similar to that of normal rats (22 to 279 μm). In contrast, the number of bile duct segments along the major branch reproducibly doubled, the length of the bile duct segments decreased twofold, and the length of the biliary tree remained unchanged after ANIT feeding. Moreover, the total volume of the biliary tree of ANIT-fed rats was significantly greater (855 μl) than in normal rats (47 μl). Compared with normal rats, the total surface area of the biliary tree increased 26 times after ANIT-induced bile duct proliferation. Taken together, these observations quantitate the anatomical remodeling after selective cholangiocyte proliferation and strongly suggest that the proliferative process involves sprouting of new side branches. Our results may be relevant to the mechanisms by which ducts proliferate in response to hepatic injury and to the hypercholeresis that occurs after experimentally induced bile duct proliferation. PMID:11395385

  16. Reporducibilities of cephalometric measurements of three-dimensional CT images reconstructed in the personal computer

    International Nuclear Information System (INIS)

    Jeon, Kug Jin; Park, Hyok; Lee, Hee Cheol; Kim, Kee Deog; Park, Chang Seo

    2003-01-01

    The purpose of this study was to report the reproducibility of intra-observer and inter-observer consistency of cephalometric measurements using three-dimensional (3D) computed tomography (CT), and the degree of difference of the cephalometric measurements. CT images of 16 adult patients with normal class I occlusion were sent to personal computer and reconstructed into 3D images using V-Works 3.5 TM (Cybermed Inc., Seoul, Korea). With the internal program of V-Works 3.5 TM , 12 landmarks on regular cephalograms were transformed into 21 analytic categories and measured by 2 observers and in addition, one of the observers repeated their measurements. Intra-observer difference was calculated using paired t-test, and inter-observer by two sample test. There were significant differences in the intra-observer measurements (p<0.05) in four of the categories which included ANS-Me, ANS-PNS, Cdl-GO (Lt), GoL-GoR, but with the exception of Cdl-Go (Lt), ZmL-ZmR, Zyo-Zyo, the average differences were within 2 mm of each other. The inter-observer observations also showed significant differences in the measurements of the ZmL-ZmR and Zyo-Zyo categories (p<0.05). With the exception of the Cdl-Me (Rt), ZmL-ZmR, Zyo-Zyo categories, the average differences between the two observers were within 2mm, but the ZmL-ZmR and Zyo-Zyo values differed greatly with values of 8.10 and 19.8 mm respectively. In general, 3D CT images showed greater accuracy and reproducibility, with the exception of suture areas such as Zm and Zyo, than regular cephalograms in orthodontic measurement, showing differences of less than 2 mm, therefore 3D CT images can be useful in cephalometric measurements and treatment planning.

  17. Experimental investigation of three-dimensional flow instabilities in a rotating lid-driven cavity

    DEFF Research Database (Denmark)

    Sørensen, Jens Nørkær; Naumov, I.; Mikkelsen, Robert Flemming

    2006-01-01

    liquid. For the first time the onset of three-dimensionality and transition are analysed by combining the high spatial resolution of Particle Image Velocimetry (PIV) and the temporal accuracy of Laser Doppler Anemometry (LDA). A detailed mapping of the transition from steady and axisymmetric flow...

  18. Measurement of acetabular morphology under three-dimensional reconstruction of CT and significance

    International Nuclear Information System (INIS)

    Han Yingying; Yang Qiwei; Lai Ying; Hao Shuang; Ma Hecheng; Xiao Chengshuang; Li Youqiong

    2011-01-01

    Objective: To measure the acetabular morphology of Chinese on CT three-dimensional (3D) reconstruction image, and provide the evidence on the prevention and treatment of hip disease. Methods: 96 cases (192 sides) of adult hip CT scans were reconstructed, the acetabular index (AA), center-edge (CE), ACE angle, anteversion angle (AVA), abduction angle (ABA), and vertical diameter (SID) were measured. Results: The total acetabular index was (8.78±5.34)°, of which male was (7.84±5.55)° and female was (9.60±5.06)°. The total CE was (33.59±5.91)°, of which male was (34.55±6.03)° and female was (32.78±5.70)°. The total ACE angle was (29.01±5.65)°, of which male was (28.02±5.94)° and female was (29.80±5.30)°. The total AVA was (20.92±5.55)°, of which male was (20.48±5.08)° and female was (21.25±5.89)°. The total ABA was (51.27±4.16)°, of which male was (51.71±4.37)° and female was (50.89±3.96)°. The total SID was (53.79±3.92) mm, of which male was (56.55±2.64) mm and female was (51.46±3.25) mm. Of the above data, there were statistical differences in the acetabular index, CE angle, ACE angle and acetabular diameter between men and women (P<0.05), Chinese and foreigners (P<0.05). While there was no statistical difference between the left and right sides (P>0.05). Conclusion: There are differences in acetabular morphology between men and women, Chinese and foreigners. Compared with simply using overseas data, it is better to study morphological parameters of native acetabula to instruct the preoperative preparation and operation of national total hip arthroplasty surgery. And it is meaningful to design national parameters. (authors)

  19. Evaluations of Three-Dimensional Building Model Reconstruction from LiDAR Point Clouds and Single-View Perspective Imagery

    Directory of Open Access Journals (Sweden)

    F. Tsai

    2014-06-01

    Full Text Available This paper briefly presents two approaches for effective three-dimensional (3D building model reconstruction from terrestrial laser scanning (TLS data and single perspective view imagery and assesses their applicability to the reconstruction of 3D models of landmark or historical buildings. The collected LiDAR point clouds are registered based on conjugate points identified using a seven-parameter transformation system. Three dimensional models are generated using plan and surface fitting algorithms. The proposed single-view reconstruction (SVR method is based on vanishing points and single-view metrology. More detailed models can also be generated according to semantic analysis of the façade images. Experimental results presented in this paper demonstrate that both TLS and SVR approaches can successfully produce accurate and detailed 3D building models from LiDAR point clouds or different types of single-view perspective images.

  20. Three-Dimensional Rotational Angiography of the Foot in Critical Limb Ischemia: A New Dimension in Revascularization Strategy

    International Nuclear Information System (INIS)

    Jens, Sjoerd; Lucatelli, Pierleone; Koelemay, Mark J. W.; Marquering, Henk A.; Reekers, Jim A.

    2013-01-01

    Purpose. To evaluate the additional value of three-dimensional rotational angiography (3DRA) of the foot compared with digital subtraction angiography (DSA) in patients with critical limb ischemia (CLI). Technique. For 3DRA, the C-arm was placed in the propeller position with the foot in an isocentric position. The patient’s unaffected foot was positioned in a footrest outside the field of view. For correct timing of 3DRA, the delay from contrast injection in the popliteal artery at the level of knee joint to complete pedal arterial enhancement was assessed using DSA. With this delay, 3DRA was started after injection of 15 ml contrast. Imaging of the 3DRA could directly be reconstructed and visualized.Materials and MethodsPatients undergoing 3DRA of the foot were prospectively registered. DSA and 3DRA images were scored separately for arterial patency and presence of collaterals. Treatment strategies were proposed based on DSA with and without the availability of 3DRA. Results. Eleven patients underwent 3DRA of the foot. One 3DRA was not included because the acquisition was focused on the heel instead of the entire foot. Diagnostic quality of 3DRA was good in all ten patients. 3DRA compared with DSA showed additional patent arteries in six patients, patent plantar arch in three patients, and collaterals between the pedal arteries in five patients. Additional information from 3DRA resulted in a change of treatment strategy in six patients. Conclusion, 3DRA of the foot contains valuable additional real-time information to better guide peripheral vascular interventions in patients with CLI and nonhealing tissue lesions.

  1. Three-Dimensional Rotational Angiography of the Foot in Critical Limb Ischemia: A New Dimension in Revascularization Strategy

    Energy Technology Data Exchange (ETDEWEB)

    Jens, Sjoerd, E-mail: s.jens@amc.uva.nl [Academic Medical Center, Department of Radiology (Netherlands); Lucatelli, Pierleone, E-mail: pierleone.lucatelli@gmail.com [' Sapienza' University of Rome, Vascular and Interventional Radiology Unit, Department of Radiological Sciences (Italy); Koelemay, Mark J. W., E-mail: m.j.koelemaij@amc.uva.nl [Academic Medical Center, Department of Surgery (Netherlands); Marquering, Henk A., E-mail: h.a.marquering@amc.uva.nl; Reekers, Jim A., E-mail: j.a.reekers@amc.uva.nl [Academic Medical Center, Department of Radiology (Netherlands)

    2013-06-15

    Purpose. To evaluate the additional value of three-dimensional rotational angiography (3DRA) of the foot compared with digital subtraction angiography (DSA) in patients with critical limb ischemia (CLI). Technique. For 3DRA, the C-arm was placed in the propeller position with the foot in an isocentric position. The patient's unaffected foot was positioned in a footrest outside the field of view. For correct timing of 3DRA, the delay from contrast injection in the popliteal artery at the level of knee joint to complete pedal arterial enhancement was assessed using DSA. With this delay, 3DRA was started after injection of 15 ml contrast. Imaging of the 3DRA could directly be reconstructed and visualized.Materials and MethodsPatients undergoing 3DRA of the foot were prospectively registered. DSA and 3DRA images were scored separately for arterial patency and presence of collaterals. Treatment strategies were proposed based on DSA with and without the availability of 3DRA. Results. Eleven patients underwent 3DRA of the foot. One 3DRA was not included because the acquisition was focused on the heel instead of the entire foot. Diagnostic quality of 3DRA was good in all ten patients. 3DRA compared with DSA showed additional patent arteries in six patients, patent plantar arch in three patients, and collaterals between the pedal arteries in five patients. Additional information from 3DRA resulted in a change of treatment strategy in six patients. Conclusion, 3DRA of the foot contains valuable additional real-time information to better guide peripheral vascular interventions in patients with CLI and nonhealing tissue lesions.

  2. Effects of tibial baseplate shape on rotational alignment in total knee arthroplasty: three-dimensional surgical simulation using osteoarthritis knees.

    Science.gov (United States)

    Ma, Yuan; Mizu-Uchi, Hideki; Okazaki, Ken; Ushio, Tetsuro; Murakami, Koji; Hamai, Satoshi; Akasaki, Yukio; Nakashima, Yasuharu

    2018-01-01

    Placement of tibial component is expected to fulfill both maximum surface coverage and recommended anterior-posterior (AP) alignment in total knee arthroplasty (TKA). The purpose of this study is to evaluate the effect of the tibial baseplate shape on AP axis. Virtual surgery of TKA was performed with three-dimensional bone models reconstructed from 77 osteoarthritis varus knees. Two differently designed tibial baseplates, symmetrically and anatomically, were set to the cut surface under posterior slopes of 0°, 3°, and 7°. The AP axes were defined by connecting the geometrical center of the cut surface with the medial edge (axis MED) and medial 1/3 (axis 1/3MED) of patella tendon attachment. We evaluated the overhang rates as well as the most fitting AP axis which passes through the geometric center. Overhang rates when aligned to axis MED were 12-25% for the symmetrical-type group and 13-22% for the anatomical-type group. Overhang rates when aligned to axis 1/3MED were 42-48% for the symmetrical-type group and 3-7% for the anatomical-type group. The most fitting AP axis of tibial baseplate was located 2.5° external to axis MED for the symmetrical-type group and around 3.3° internal to axis 1/3MED for the anatomical-type group. Symmetrically or anatomically designed tibial baseplates have their own favored AP axis and specific performance on coverage. When aligned to axis 1/3MED, anatomically designed tibial baseplates will effectively lower the mismatch rates compared to a symmetrically designed tibial baseplate. Orthopaedic surgeons are expected to place the tibial components to the cut surface during TKA with full understanding of the features between different baseplate designs, AP axes, and posterior slopes for an ideal tibial rotational position.

  3. The one-parameter subgroup of rotations generated by spin transformations in three-dimensional real space

    International Nuclear Information System (INIS)

    Gazoya, E.D.K.; Prempeh, E.; Banini, G.K.

    2015-01-01

    The relationship between the spin transformations of the special linear group of order 2, SL (2, C) and the aggregate SO(3) of the three-dimensional pure rotations when considered as a group in itself (and not as a subgroup of the Lorentz group), is investigated. It is shown, by the spinor map X - → AXA ct which is all action of SL(2. C) on the space of Hermitian matrices, that the one- parameter subgroup of rotations generated are precisely those of angles which are multiples 2π. (au)

  4. [Cartilage repair and subchondral bone reconstruction based on three-dimensional printing technique].

    Science.gov (United States)

    Zhang, Weijie; Lian, Qin; Li, Dichen; Wang, Kunzheng; Jin, Zhongmin; Bian, Weiguo; Liu, Yaxiong; He, Jiankang; Wang, Ling

    2014-03-01

    To investigate whether subchondral bone microstructural parameters are related to cartilage repair during large osteochondral defect repairing based on three-dimensional (3-D) printing technique. Biomimetic biphasic osteochondral composite scaffolds were fabricated by using 3-D printing technique. The right trochlea critical sized defects (4.8 mm in diameter, 7.5 mm in depth) were created in 40 New Zealand white rabbits (aged 6 months, weighing 2.5-3.5 kg). Biomimetic biphasic osteochondral composite scaffolds were implanted into the defects in the experimental group (n = 35), and no composite scaffolds implantation served as control group (n = 5); the left side had no defect as sham-operation group. Animals of experimental and sham-operation groups were euthanized at 1, 2, 4, 8, 16, 24, and 52 weeks after operation, while animals of control group were sampled at 24 weeks. Subchondral bone microstructural parameters and cartilage repair were quantitatively analyzed using Micro-CT and Wayne scoring system. Correlation analysis and regression analysis were applied to reveal the relationship between subchondral bone parameters and cartilage repair. The subchondral bone parameters included bone volume fraction (BV/TV), bone surface area fraction (BSA/BV), trabecular thickness (Tb.Th), trabecular number (Tb.N), and trabecular spacing (Tb.Sp). In the experimental group, articular cartilage repair was significantly improved at 52 weeks postoperatively, which was dominated by hyaline cartilage tissue, and tidal line formed. Wayne scores at 24 and 52 weeks were significantly higher than that at 16 weeks in the experimental group (P 0.05); the scores of experimental group were significantly lower than those of sham-operation group at all time points (P twin peaks" like discipline to which BV/TV, BSA/BV, and Tb.N increased at 2 and 16 weeks, and then they returned to normal level. The Tb.Sp showed reversed discipline compared to the former 3 parameters, no significant change

  5. Does men's advantage in mental rotation persist when real three-dimensional objects are either felt or seen?

    Science.gov (United States)

    Robert, Michèle; Chevrier, Eliane

    2003-10-01

    In several spatial tasks in which men outperform women in the processing of visual input, the sex difference has been eliminated in matching contexts limited to haptic input. The present experiment tested whether such contrasting results would be reproduced in a mental rotation task. A standard visual condition involved two-dimensional illustrations of three-dimensional stimuli; in a haptic condition, three-dimensional replicas of these stimuli were only felt; in an additional visual condition, these replicas were seen. The results indicated that, irrespective of condition, men's response times were shorter than women's, although accuracy did not significantly differ according to sex. For both men and women, response times were shorter and accuracy was higher in the standard condition than in the haptic one, the best performances being recorded when full replicas were shown. Self-reported solving strategies also varied as a function of sex and condition. The discussion emphasizes the robustness of men's faster speed in mental rotation. With respect to both speed and accuracy, the demanding sequential processing called for in the haptic setting, relative to the standard condition, is underscored, as is the benefit resulting from easier access to depth cues in the visual context with real three-dimensional objects.

  6. Three-dimensional wake reconstruction of a flapping-wing MAV using a Kriging regression technique

    NARCIS (Netherlands)

    Percin, M.; De Baar, J.H.S.; Van Oudheusden, B.W.; Dwight, R.P.

    2013-01-01

    The work explores the three-dimensional unsteady wake of a flapping-wing Micro Air Vehicle (MAV) ‘DelFly II’, applying a Kriging regression technique for the spatial regression of time-resolved Stereoscopic Particle Image Velocimetry (Stereo-PIV) data. In the view of limited number of measurement

  7. A greedy method for reconstructing polycrystals from three-dimensional X-ray diffraction data

    DEFF Research Database (Denmark)

    Kulshreshth, Arun Kumar; Alpers, Andreas; Herman, Gabor T.

    2009-01-01

    An iterative search method is proposed for obtaining orientation maps inside polycrystals from three-dimensional X-ray diffraction (3DXRD) data. In each step, detector pixel intensities are calculated by a forward model based on the current estimate of the orientation map. The pixel at which the ...

  8. Three-dimensional histological specimen preparation for accurate imaging and spatial reconstruction of the middle and inner ear

    OpenAIRE

    Rau, Thomas S.; W?rfel, Waldemar; Lenarz, Thomas; Majdani, Omid

    2013-01-01

    Purpose ???This paper presents a highly accurate cross-sectional preparation technique. The research aim was to develop an adequate imaging modality for both soft and bony tissue structures featuring high contrast and high resolution. Therefore, the advancement of an already existing microgrinding procedure was pursued. The central objectives were to preserve spatial relations and to ensure the accurate three-dimensional reconstruction of histological sections. Methods ???Twelve human tempora...

  9. Effect of three-dimensional reconstruction-assisted 23G micro-invasive vitrectomy in patients with proliferative diabetic retinopathy.

    Science.gov (United States)

    Fu, Min; Lu, Xiaohe; Hu, Huijun; Feng, Songfu; Wu, Wei; Ke, Xiaoyun; Xu, Xiaoping; Chen, Xiaohong; Hai, Huiqiao

    2017-06-01

    In the present study, we investigated the effect of optical coherence tomography (OCT) three-dimensional reconstruction-assisted 23G micro-invasive vitrectomy (abbreviated to'23G') in patients with proliferative diabetic retinopathy (PDR). A total of 66 PDR patients (66 eyes) were continuously selected and randomly divided into the control and observation groups with 33 patients in each group. Patients in the control group were treated with routine OCT examination while the patients in the observation group were treated with OCT three-dimensional retinal reconstruction. The 23G surgical method was applied to the two groups, and a comparison was made on the clinical effects in the two groups. The follow-up visits lasted for approximately 6 months, and it was found that the operative time, occurrence rate of intraoperative complications and postoperative complications as shown in the observation group were significantly less than those in the control group (Pobservation group was significantly greater than that of patients in the control group while the intraocular pressure and retinal thickness of patients in the observation group were significantly less than those of patients in the control group (P<0.05). In conclusion, the effect of 23G surgical method in PDR patients can be improved and corresponding complications can be reduced under the assistance of OCT three-dimensional reconstruction.

  10. A general theory of two- and three-dimensional rotational flow in subsonic and transonic turbomachines

    Science.gov (United States)

    Wu, Chung-Hua

    1993-01-01

    This report represents a general theory applicable to axial, radial, and mixed flow turbomachines operating at subsonic and supersonic speeds with a finite number of blades of finite thickness. References reflect the evolution of computational methods used, from the inception of the theory in the 50's to the high-speed computer era of the 90's. Two kinds of relative stream surfaces, S(sub 1) and S(sub 2), are introduced for the purpose of obtaining a three-dimensional flow solution through the combination of two-dimensional flow solutions. Nonorthogonal curvilinear coordinates are used for the governing equations. Methods of computing transonic flow along S(sub 1) and S(sub 2) stream surfaces are given for special cases as well as for fully three-dimensional transonic flows. Procedures pertaining to the direct solutions and inverse solutions are presented. Information on shock wave locations and shapes needed for computations are discussed. Experimental data from a Deutsche Forschungs- und Versuchsanstalt fur Luft- und Raumfahrt e.V. (DFVLR) rotor and from a Chinese Academy of Sciences (CAS) transonic compressor rotor are compared with the computed flow properties.

  11. Reconstruction of mechanically recorded sound from an edison cylinder using three dimensional non-contact optical surface metrology

    Energy Technology Data Exchange (ETDEWEB)

    Fadeyev, V.; Haber, C.; Maul, C.; McBride, J.W.; Golden, M.

    2004-04-20

    Audio information stored in the undulations of grooves in a medium such as a phonograph disc record or cylinder may be reconstructed, without contact, by measuring the groove shape using precision optical metrology methods and digital image processing. The viability of this approach was recently demonstrated on a 78 rpm shellac disc using two dimensional image acquisition and analysis methods. The present work reports the first three dimensional reconstruction of mechanically recorded sound. The source material, a celluloid cylinder, was scanned using color coded confocal microscopy techniques and resulted in a faithful playback of the recorded information.

  12. Systems and methods that generate height map models for efficient three dimensional reconstruction from depth information

    Science.gov (United States)

    Frahm, Jan-Michael; Pollefeys, Marc Andre Leon; Gallup, David Robert

    2015-12-08

    Methods of generating a three dimensional representation of an object in a reference plane from a depth map including distances from a reference point to pixels in an image of the object taken from a reference point. Weights are assigned to respective voxels in a three dimensional grid along rays extending from the reference point through the pixels in the image based on the distances in the depth map from the reference point to the respective pixels, and a height map including an array of height values in the reference plane is formed based on the assigned weights. An n-layer height map may be constructed by generating a probabilistic occupancy grid for the voxels and forming an n-dimensional height map comprising an array of layer height values in the reference plane based on the probabilistic occupancy grid.

  13. Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL

    OpenAIRE

    Nakano, Miki; Miyashita, Osamu; Jonic, Slavica; Song, Changyong; Nam, Daewoong; Joti, Yasumasa; Tama, Florence

    2017-01-01

    The three-dimensional (3D) structural analysis of single particles using an X-ray free-electron laser (XFEL) is a new structural biology technique that enables observations of molecules that are difficult to crystallize, such as flexible biomolecular complexes and living tissue in the state close to physiological conditions. In order to restore the 3D structure from the diffraction patterns obtained by the XFEL, computational algorithms are necessary as the orientation of the incident beam wi...

  14. Three-dimensional reconstruction and modeling of middle ear biomechanics by high-resolution computed tomography and finite element analysis.

    Science.gov (United States)

    Lee, Chia-Fone; Chen, Peir-Rong; Lee, Wen-Jeng; Chen, Jyh-Horng; Liu, Tien-Chen

    2006-05-01

    To present a systematic and practical approach that uses high-resolution computed tomography to derive models of the middle ear for finite element analysis. This prospective study included 31 subjects with normal hearing and no previous otologic disorders. Temporal bone images obtained from 15 right ears and 16 left ears were used for evaluation and reconstruction. High-resolution computed tomography of temporal bone was performed using simultaneous acquisition of 16 sections with a collimated slice thickness of 0.625 mm. All images were transferred to an Amira visualization system for three-dimensional reconstruction. The created three-dimensional model was translated into two commercial modeling packages, Patran and ANSYS, for finite element analysis. The characteristic dimensions of the model were measured and compared with previously published histologic section data. This result confirms that the geometric model created by the proposed method is accurate except that the tympanic membrane is thicker than when measured by the histologic section method. No obvious difference in the geometrical dimension between right and left ossicles was found (P > .05). The three-dimensional model created by finite element method and predicted umbo and stapes displacements are close to the bounds of the experimental curves of Nishihara's, Huber's, Gan's, and Sun's data across the frequency range of 100 to 8000 Hz. The model includes a description of the geometry of the middle ear components and dynamic equations of vibration. The proposed method is quick, practical, low-cost, and, most importantly, noninvasive as compared with histologic section methods.

  15. Three-dimensional reconstruction of brain surface anatomy: technique comparison between flash and diffusion-weighted imaging

    International Nuclear Information System (INIS)

    Sun Jianzhong; Wang Zhikang; Gong Xiangyang

    2006-01-01

    Objective: To compare two methods 3D flash and diffusion-weighted images (DWI) in reconstructing the brain surface anatomy, and to evaluate their displaying ability, advantages, limitations and clinical application. Methods: Thrity normal cases were prospectively examined with 3D flash sequence and echo-planar DWI. Three-dimensional images were acquired with volume-rendering on workstation. Brain surface structures were evaluated and scored by a group of doctors. Results: Main structures of brain surface were clearly displayed on three-dimensional images based on 3D flash sequence. Average scores were all above 2.50. For images based on DWI, precentral gyrus, postcentral gyrus, superior parietal lobule, superior frontal gyrus, precentral sulcus, central sulcus, postcentral sulcus, intraparietal sulcus and superior frontal sulcus were best shown with average scores between 2.60-2.75, However, supramarginal gyrus, angular gyrus, middle frontal gyrus, inferior frontal gyrus, superior temporal gyrus, lateral sulcus, inferior frontal sulcus could not be well shown, with average scores between 1.67-2.48. Middle temporal gyrus, inferior temporal gyrus, superior temporal sulcus and inferior temporal sulcus can only get scores from 0.88 to 1.27. Scores of images based on 3D flash were much higher than that based on DWI with distinct differentiations, P values were all below 0.01. Conclusion: Three-dimensional images based on 3D flash can really display brain surface structures. It is very useful for anatomic researches. Three-dimensional reconstruction of brain surface based on DWI is a worthy technique to display brain surface anatomy, especially for frontal and parietal structures. (authors)

  16. Dynamic Three-Dimensional Shoulder Mri during Active Motion for Investigation of Rotator Cuff Diseases.

    Directory of Open Access Journals (Sweden)

    Christine Tempelaere

    Full Text Available MRI is the standard methodology in diagnosis of rotator cuff diseases. However, many patients continue to have pain despite treatment, and MRI of a static unloaded shoulder seems insufficient for best diagnosis and treatment. This study evaluated if Dynamic MRI provides novel kinematic data that can be used to improve the understanding, diagnosis and best treatment of rotator cuff diseases.Dynamic MRI provided real-time 3D image series and was used to measure changes in the width of subacromial space, superior-inferior translation and anterior-posterior translation of the humeral head relative to the glenoid during active abduction. These measures were investigated for consistency with the rotator cuff diseases classifications from standard MRI.The study included: 4 shoulders with massive rotator cuff tears, 5 shoulders with an isolated full-thickness supraspinatus tear, 5 shoulders with tendinopathy and 6 normal shoulders. A change in the width of subacromial space greater than 4mm differentiated between rotator cuff diseases with tendon tears (massive cuff tears and supraspinatus tear and without tears (tendinopathy (p = 0.012. The range of the superior-inferior translation was higher in the massive cuff tears group (6.4mm than in normals (3.4mm (p = 0.02. The range of the anterior-posterior translation was higher in the massive cuff tears (9.2 mm and supraspinatus tear (9.3 mm shoulders compared to normals (3.5mm and tendinopathy (4.8mm shoulders (p = 0.05.The Dynamic MRI enabled a novel measure; 'Looseness', i.e. the translation of the humeral head on the glenoid during an abduction cycle. Looseness was better able at differentiating different forms of rotator cuff disease than a simple static measure of relative glenohumeral position.

  17. Dynamic Three-Dimensional Shoulder Mri during Active Motion for Investigation of Rotator Cuff Diseases.

    Science.gov (United States)

    Tempelaere, Christine; Pierrart, Jérome; Lefèvre-Colau, Marie-Martine; Vuillemin, Valérie; Cuénod, Charles-André; Hansen, Ulrich; Mir, Olivier; Skalli, Wafa; Gregory, Thomas

    2016-01-01

    MRI is the standard methodology in diagnosis of rotator cuff diseases. However, many patients continue to have pain despite treatment, and MRI of a static unloaded shoulder seems insufficient for best diagnosis and treatment. This study evaluated if Dynamic MRI provides novel kinematic data that can be used to improve the understanding, diagnosis and best treatment of rotator cuff diseases. Dynamic MRI provided real-time 3D image series and was used to measure changes in the width of subacromial space, superior-inferior translation and anterior-posterior translation of the humeral head relative to the glenoid during active abduction. These measures were investigated for consistency with the rotator cuff diseases classifications from standard MRI. The study included: 4 shoulders with massive rotator cuff tears, 5 shoulders with an isolated full-thickness supraspinatus tear, 5 shoulders with tendinopathy and 6 normal shoulders. A change in the width of subacromial space greater than 4mm differentiated between rotator cuff diseases with tendon tears (massive cuff tears and supraspinatus tear) and without tears (tendinopathy) (p = 0.012). The range of the superior-inferior translation was higher in the massive cuff tears group (6.4mm) than in normals (3.4mm) (p = 0.02). The range of the anterior-posterior translation was higher in the massive cuff tears (9.2 mm) and supraspinatus tear (9.3 mm) shoulders compared to normals (3.5mm) and tendinopathy (4.8mm) shoulders (p = 0.05). The Dynamic MRI enabled a novel measure; 'Looseness', i.e. the translation of the humeral head on the glenoid during an abduction cycle. Looseness was better able at differentiating different forms of rotator cuff disease than a simple static measure of relative glenohumeral position.

  18. Three-Dimensional Visualization of Wave Functions for Rotating Molecule: Plot of Spherical Harmonics

    Science.gov (United States)

    Nagaoka, Shin-ichi; Teramae, Hiroyuki; Nagashima, Umpei

    2013-01-01

    At an early stage of learning quantum chemistry, undergraduate students usually encounter the concepts of the particle in a box, the harmonic oscillator, and then the particle on a sphere. Rotational levels of a diatomic molecule can be well approximated by the energy levels of the particle on a sphere. Wave functions for the particle in a…

  19. [Research on Three-dimensional Medical Image Reconstruction and Interaction Based on HTML5 and Visualization Toolkit].

    Science.gov (United States)

    Gao, Peng; Liu, Peng; Su, Hongsen; Qiao, Liang

    2015-04-01

    Integrating visualization toolkit and the capability of interaction, bidirectional communication and graphics rendering which provided by HTML5, we explored and experimented on the feasibility of remote medical image reconstruction and interaction in pure Web. We prompted server-centric method which did not need to download the big medical data to local connections and avoided considering network transmission pressure and the three-dimensional (3D) rendering capability of client hardware. The method integrated remote medical image reconstruction and interaction into Web seamlessly, which was applicable to lower-end computers and mobile devices. Finally, we tested this method in the Internet and achieved real-time effects. This Web-based 3D reconstruction and interaction method, which crosses over internet terminals and performance limited devices, may be useful for remote medical assistant.

  20. Three-dimensional reconstruction of neutron, gamma-ray, and x-ray sources using spherical harmonic decomposition

    Science.gov (United States)

    Volegov, P. L.; Danly, C. R.; Fittinghoff, D.; Geppert-Kleinrath, V.; Grim, G.; Merrill, F. E.; Wilde, C. H.

    2017-11-01

    Neutron, gamma-ray, and x-ray imaging are important diagnostic tools at the National Ignition Facility (NIF) for measuring the two-dimensional (2D) size and shape of the neutron producing region, for probing the remaining ablator and measuring the extent of the DT plasmas during the stagnation phase of Inertial Confinement Fusion implosions. Due to the difficulty and expense of building these imagers, at most only a few two-dimensional projections images will be available to reconstruct the three-dimensional (3D) sources. In this paper, we present a technique that has been developed for the 3D reconstruction of neutron, gamma-ray, and x-ray sources from a minimal number of 2D projections using spherical harmonics decomposition. We present the detailed algorithms used for this characterization and the results of reconstructed sources from experimental neutron and x-ray data collected at OMEGA and NIF.

  1. Generalized uncertainty principle and entropy of three-dimensional rotating acoustic black hole

    International Nuclear Information System (INIS)

    Zhao, HuiHua; Li, GuangLiang; Zhang, LiChun

    2012-01-01

    Using the new equation of state density from the generalized uncertainty principle, we investigate statistics entropy of a 3-dimensional rotating acoustic black hole. When λ introduced in the generalized uncertainty principle takes a specific value, we obtain an area entropy and a correction term associated with the acoustic black hole. In this method, there does not exist any divergence and one needs not the small mass approximation in the original brick-wall model. -- Highlights: ► Statistics entropy of a 3-dimensional rotating acoustic black hole is studied. ► We obtain an area entropy and a correction term associated with it. ► We make λ introduced in the generalized uncertainty principle take a specific value. ► There does not exist any divergence in this method.

  2. Static and rotating electrically charged black holes in three-dimensional Brans-Dicke gravity theories

    OpenAIRE

    Dias, Oscar J. C.; Lemos, Jose' P. S.

    2001-01-01

    We obtain static and rotating electrically charged black holes of a Einstein-Maxwell-Dilaton theory of the Brans-Dicke type in (2+1)-dimensions. The theory is specified by three fields, the dilaton, the graviton and the electromagnetic field, and two parameters, the cosmological constant and the Brans-Dicke parameter. It contains eight different cases, of which one distinguishes as special cases, string theory, general relativity and a theory equivalent to four dimensional general relativity ...

  3. Three-dimensional reconstruction of the size and shape of protein microcrystals using Bragg coherent diffractive imaging

    Energy Technology Data Exchange (ETDEWEB)

    Coughlan, H. D.; Darmanin, C.; Kirkwood, H. J.; Phillips, N. W.; Hoxley, D.; Clark, J. N.; Harder, R. J.; Maxey, E.; Abbey, B.

    2016-03-14

    Three-dimensional imaging of protein crystals during X-ray diffraction experiments opens up a range of possibilities for optimising crystal quality and gaining new insights into the fundamental processes that drive radiation damage. Obtaining this information at the appropriate lengthscales however is extremely challenging. One approach that has been recently demonstrated as a promising avenue for charactering the size and shape of protein crystals at nanometre lengthscales is Bragg Coherent Diffractive Imaging (BCDI). BCDI is a recently developed technique that is able to recover the phase of the continuous diffraction intensity signal around individual Bragg peaks. When data is collected at multiple points on a rocking curve a Reciprocal Space Map (RSM) can be assembled and then inverted using BCDI to obtain a three-dimensional image of the crystal. The first demonstration of two-dimensional BCDI of protein crystals was reported by Boutet at al., recently this work was extended to the study of radiation damage of micron-sized crystals. Here we present the first three-dimensional reconstructions of a Lysozyme protein crystal using BDI. The results are validated against RSM and TEM data and have implications for both radiation damage studies and for developing new approaches to structure retrieval from micron-sized protein crystals.

  4. High immersive three-dimensional tabletop display system with high dense light field reconstruction

    Science.gov (United States)

    Zheng, Mengqing; Yu, Xunbo; Xie, Songlin; Sang, Xinzhu; Yu, Chongxiu

    2014-11-01

    Three-dimensional (3D) tabletop display is a kind of display with wide range of potential applications. An auto-stereoscopic 3D tabletop display system is designed to provide the observers with high level of immersive perception. To improve the freedom of viewing position, the eye tracking system and a set of active partially pixelated masks are utilized. To improve the display quality, large number of images is prepared to generate the stereo pair. The light intensity distribution and crosstalk of parallax images are measured respectively to evaluate the rationality of the auto-stereoscopic system. In the experiment, the high immersive auto-stereoscopic tabletop display system is demonstrated, together with the system architectures including hardware and software. Experimental results illustrate the effectiveness of the high immersive auto-stereoscopic tabletop display system.

  5. Three-Dimensional Orbits of Earth Satellites, Including Effects of Earth Oblateness and Atmospheric Rotation

    Science.gov (United States)

    Nielsen, Jack N.; Goodwin, Frederick K.; Mersman, William A.

    1958-01-01

    The principal purpose of the present paper is to present sets of equations which may be used for calculating complete trajectories of earth satellites from outer space to the ground under the influence of air drag and gravity, including oblateness effects, and to apply these to several examples of entry trajectories starting from a circular orbit. Equations of motion, based on an "instantaneous ellipse" technique, with polar angle as independent variable, were found suitable for automatic computation of orbits in which the trajectory consists of a number of revolutions. This method is suitable as long as the trajectory does not become nearly vertical. In the terminal phase of the trajectories, which are nearly vertical, equations of motion in spherical polar coordinates with time as the independent variable were found to be more suitable. In the first illustrative example the effects of the oblateness component of the earth's gravitational field and of atmospheric rotation were studied for equatorial orbits. The satellites were launched into circular orbits at a height of 120 miles, an altitude sufficiently high that a number of revolutions could be studied. The importance of the oblateness component of the earth's gravitational field is shown by the fact that a satellite launched at circular orbital speed, neglecting oblateness, has a perigee some 67,000 feet lower when oblateness forces are included in the equations of motion than when they are not included. Also, the loss in altitude per revolution is double that of a satellite following an orbit not subject to oblateness. The effect of atmospheric rotation on the loss of altitude per revolution was small. As might be surmised, the regression of the line of nodes as predicted by celestial mechanics is unchanged when drag is included. It is clear that the inclination of the orbital plane to the equator will be relatively unaffected by drag for no atmospheric rotation since the drag lies in the orbital plane in

  6. The application of three-dimensional reconstruction technology in industrial computed tomography

    International Nuclear Information System (INIS)

    Zhang Aidong; Sun Lingxia; Zhou Ying; Ye Yunchang

    2009-01-01

    It's an important research aspect in domestic ICT field, that the 3-D visualization of continuous ICT images reconstructed by 3-D reconstruction technology. The contour lines are joint by triangles in the course of 3-D reconstructions of the continuous equidistant ICT images. After the stereo images of the scanned objects are displayed, some special functions including inspections of the objects from different angles and orientations, nondestructive measurement of some 3-D parameters and so on will be carried out just by operating the computer. The inspectors can get more detailed structural information by the reconstructed images. So in this way the convenience and veracity of the non-detection have been promoted. (authors)

  7. Digital holography super-resolution for accurate three-dimensional reconstruction of particle holograms.

    Science.gov (United States)

    Verrier, Nicolas; Fournier, Corinne

    2015-01-15

    In-line digital holography (DH) is used in many fields to locate and size micro or nano-objects spread in a volume. To reconstruct simple shaped objects, the optimal approach is to fit an imaging model to accurately estimate their position and their characteristic parameters. Increasing the accuracy of the reconstruction is a big issue in DH, particularly when the pixel is large or the signal-to-noise ratio is low. We suggest exploiting the information redundancy of videos to improve the reconstruction of the holograms by jointly estimating the position of the objects and the characteristic parameters. Using synthetic and experimental data, we checked experimentally that this approach can improve the accuracy of the reconstruction by a factor more than the square root of the image number.

  8. Reconstruction of magnetic resonance imaging by three-dimensional dual-dictionary learning.

    Science.gov (United States)

    Song, Ying; Zhu, Zhen; Lu, Yang; Liu, Qiegen; Zhao, Jun

    2014-03-01

    To improve the magnetic resonance imaging (MRI) data acquisition speed while maintaining the reconstruction quality, a novel method is proposed for multislice MRI reconstruction from undersampled k-space data based on compressed-sensing theory using dictionary learning. There are two aspects to improve the reconstruction quality. One is that spatial correlation among slices is used by extending the atoms in dictionary learning from patches to blocks. The other is that the dictionary-learning scheme is used at two resolution levels; i.e., a low-resolution dictionary is used for sparse coding and a high-resolution dictionary is used for image updating. Numerical experiments are carried out on in vivo 3D MR images of brains and abdomens with a variety of undersampling schemes and ratios. The proposed method (dual-DLMRI) achieves better reconstruction quality than conventional reconstruction methods, with the peak signal-to-noise ratio being 7 dB higher. The advantages of the dual dictionaries are obvious compared with the single dictionary. Parameter variations ranging from 50% to 200% only bias the image quality within 15% in terms of the peak signal-to-noise ratio. Dual-DLMRI effectively uses the a priori information in the dual-dictionary scheme and provides dramatically improved reconstruction quality. Copyright © 2013 Wiley Periodicals, Inc.

  9. Clinical application of EBCT angiography and three-dimensional reconstruction for evaluation of CABG

    International Nuclear Information System (INIS)

    Dai Ruping; Lu Bin; Zhan Shaoxiong; Cao Cheng; He Sha; Bai Hua; Jing Baolian

    1998-01-01

    Purpose: To probe into the method of EBCT angiography and 3-D reconstruction of coronary artery bypass grafts (CABG) and to evaluate clinical application. Materials and methods: EBCT angiography with 3-D reconstruction was achieved in eighty patients (72 male and 8 female, mean age, 56 +- 8 years) with 204 grafts including 46 internal mammary artery (IMG) and 158 saphenous vein grafts (SVG) respectively. The duration from bypass surgery to EBCT scanning was 7 days-120 months with mean duration of 17 +- 28 months. Both enhanced single slice mode (SSM) and flow study were performed in all cases. The results of 3-D reconstruction of CABG were correlated with bypass operation records and in 6 cases with coronary arteriograms. Results: For all 80 patients, the EBCT angiography and 3-D reconstruction of CABG were carried out satisfactorily. The technical successful rate was 100%. According to 3-D reconstruction of the coronary bypass grafts with flow studies, 163 of 204 coronary bypass grafts were patent including IMG patency in 91.3%(42/46) and SVG in 76.6% (121/158). Overall patent rate was 79.9%. In 6 cases with 11 coronary bypass grafts, EBCT studies showed graft patent in 6 and occluded in 5, which was confirmed by conventional graft angiography. Conclusion: (1) EBCT angiography with 3-D reconstruction is easy to perform and is an effective technique for providing the entire anatomic structure of coronary bypass grafts and evaluating coronary bypass graft patency. (2) EBCT flow study can provide quantitative data for evaluating coronary bypass graft patency to provide supplemental diagnosis of CABG 3-D reconstruction. (3) EBCT angiography is a noninvasive technique that could supplant conventional coronary arteriography for follow-up survey of coronary bypass surgery in future. (4) The limitation of EBCT in diagnosis of CABG was discussed

  10. A three-dimensional reconstruction algorithm for an inverse-geometry volumetric CT system

    International Nuclear Information System (INIS)

    Schmidt, Taly Gilat; Fahrig, Rebecca; Pelc, Norbert J.

    2005-01-01

    An inverse-geometry volumetric computed tomography (IGCT) system has been proposed capable of rapidly acquiring sufficient data to reconstruct a thick volume in one circular scan. The system uses a large-area scanned source opposite a smaller detector. The source and detector have the same extent in the axial, or slice, direction, thus providing sufficient volumetric sampling and avoiding cone-beam artifacts. This paper describes a reconstruction algorithm for the IGCT system. The algorithm first rebins the acquired data into two-dimensional (2D) parallel-ray projections at multiple tilt and azimuthal angles, followed by a 3D filtered backprojection. The rebinning step is performed by gridding the data onto a Cartesian grid in a 4D projection space. We present a new method for correcting the gridding error caused by the finite and asymmetric sampling in the neighborhood of each output grid point in the projection space. The reconstruction algorithm was implemented and tested on simulated IGCT data. Results show that the gridding correction reduces the gridding errors to below one Hounsfield unit. With this correction, the reconstruction algorithm does not introduce significant artifacts or blurring when compared to images reconstructed from simulated 2D parallel-ray projections. We also present an investigation of the noise behavior of the method which verifies that the proposed reconstruction algorithm utilizes cross-plane rays as efficiently as in-plane rays and can provide noise comparable to an in-plane parallel-ray geometry for the same number of photons. Simulations of a resolution test pattern and the modulation transfer function demonstrate that the IGCT system, using the proposed algorithm, is capable of 0.4 mm isotropic resolution. The successful implementation of the reconstruction algorithm is an important step in establishing feasibility of the IGCT system

  11. Postoperative assessment of surgical results using three dimensional surface reconstruction CT (3D-CT) in a craniofacial anomaly

    International Nuclear Information System (INIS)

    Nishimura, Jiro; Sato, Kaoru; Nishimoto, Hiroshi; Tsukiyama, Takashi; Fujioka, Mutsuhisa; Akagawa, Tetsuya.

    1988-01-01

    In 1983, Michael W. Vannier and Jeffrey L. Marsh developed a computer method that reconstructs three dimensional (3D) born and soft tissue surfaces, given a high resolution CT scan-series of the facial skeleton. This method has been applied to craniofacial anomalies, basal encephaloceles, and musculoskeletal anomalies. In this study, a postoperative assessment of the craniofacial surgical results has been accomplished using this 3D-CT in 2 children with craniofacial dysmorphism. The authors discuss the advantages of this 3D-CT imaging method in the postoperative assessments of craniofacial anomalies. Results are detailed in the following listing : 1) a postoperative 3D-CT reveals the anatomical details corrected by the craniofacial surgery more precisely and stereographically than conventional radiological methods ; 2) secondary changes of the cranium after the surgery, such as bony formation in the area of the osteotomy and postoperative asymmetric deformities, are detected early by the 3D-CT imaging technique, and, 3) 3D-CT mid-sagittal and top axial views of the intracranial skull base are most useful in postoperative assessments of the surgical results. Basesd on our experience, we expect that three dimensional surface reconstructions from CT scans will become to be used widely in the postoperative assessments of the surgical results of craniofacial anomalies. (author)

  12. Three dimensional digital reconstruction of the jaw adductor musculature of the extinct marsupial giant Diprotodon optatum

    Directory of Open Access Journals (Sweden)

    Alana C. Sharp

    2014-08-01

    Full Text Available The morphology and arrangement of the jaw adductor muscles in vertebrates reflects masticatory style and feeding processes, diet and ecology. However, gross muscle anatomy is rarely preserved in fossils and is, therefore, heavily dependent on reconstructions. An undeformed skull of the extinct marsupial, Diprotodon optatum, recovered from Pleistocene sediments at Bacchus Marsh in Victoria, represents the most complete and best preserved specimen of the species offering a unique opportunity to investigate functional anatomy. Computed tomography (CT scans and digital reconstructions make it possible to visualise internal cranial anatomy and predict location and morphology of soft tissues, including muscles. This study resulted in a 3D digital reconstruction of the jaw adductor musculature of Diprotodon, revealing that the arrangement of muscles is similar to that of kangaroos and that the muscle actions were predominantly vertical. 3D digital muscle reconstructions provide considerable advantages over 2D reconstructions for the visualisation of the spatial arrangement of the individual muscles and the measurement of muscle properties (length, force vectors and volume. Such digital models can further be used to estimate muscle loads and attachment sites for biomechanical analyses.

  13. THREE-DIMENSIONAL BUILDING RECONSTRUCTION USING IMAGES OBTAINED BY UNMANNED AERIAL VEHICLES

    Directory of Open Access Journals (Sweden)

    C. Wefelscheid

    2012-09-01

    Full Text Available Unmanned Aerial Vehicles (UAVs offer several new possibilities in a wide range of applications. One example is the 3D reconstruction of buildings. In former times this was either restricted by earthbound vehicles to the reconstruction of facades or by air-borne sensors to generate only very coarse building models. This paper describes an approach for fully automatic image-based 3D reconstruction of buildings using UAVs. UAVs are able to observe the whole 3D scene and to capture images of the object of interest from completely different perspectives. The platform used by this work is a Falcon 8 octocopter from Ascending Technologies. A slightly modified high-resolution consumer camera serves as sensor for data acquisition. The final 3D reconstruction is computed offline after image acquisition and follows a reconstruction process originally developed for image sequences obtained by earthbound vehicles. The per- formance of the described method is evaluated on benchmark datasets showing that the achieved accuracy is high and even comparable with Light Detection and Ranging (LIDAR. Additionally, the results of the application of the complete processing-chain starting at image acquisition and ending in a dense surface-mesh are presented and discussed.

  14. Three-dimensional surface reconstruction imaging for evaluation of congenital heart disease from ECG-triggered MR images

    International Nuclear Information System (INIS)

    Vannier, M.W.; Laschinger, J.; Knapp, R.H.; Gutierrez, F.R.; Gronnemeyer, S.A.

    1987-01-01

    Three-dimensional surface reconstruction images of the heart and great vessels were produced from contiguous sequences of electrocardiographically triggered MR images in 25 patients with congenital heart disease and in three healthy subjects. The imaging data were semiautomatically processed to separate the epicardial and endocardial surfaces and to define the outline of the enclosed blood volumes on a section by section basis. Images were obtained at 5-mm intervals in patients aged 3 months to 30 years with anomalies of the great vessels, tetralogy of Fallot, septal defects, pulmonary atresia, and other congenital heart malformations. The results were used to facilitate the surgical treatment of these patients and were compared with echocardiographic and cineradiographic studies, and with surgical findings or pathologic specimens. These surface reconstruction images were useful for communicating the results of diagnostic examinations to cardiac surgeons, for sizing and location of intracardiac defects, for imaging the pulmonary venous drainage, and for assessing regional and global function

  15. Three-dimensional reconstruction for a large scene of integral imaging based on color-position characteristics

    Science.gov (United States)

    Jiao, Xiao-xue; Zhang, Lei; Sun, Yu; Zhou, Li-qiu; Zhao, Xing

    2015-07-01

    A new large-scale three-dimensional (3D) reconstruction technology based on integral imaging with color-position characteristics is presented. The color of the object point is similar to those of corresponding points. The corresponding point coordinates form arithmetic progressions because integral imaging captures information with a senior array which has similar pitches on x and y directions. This regular relationship is used to determine the corresponding point parameters for reconstructing 3D information from divided elemental images separated by color, which contain several corresponding points. The feasibility of the proposed method is demonstrated through an optical indoor experiment. A large-scale application of the proposed method is illustrated by the experiment with a corner of our school as its object.

  16. Microporous membrane-based liver tissue engineering for the reconstruction of three-dimensional functional liver tissues in vitro.

    Science.gov (United States)

    Kasuya, Junichi; Tanishita, Kazuo

    2012-01-01

    To meet the increasing demand for liver tissue engineering, various three-dimensional (3D) liver cell culture techniques have been developed. Nevertheless, conventional liver cell culture techniques involving the suspending cells in extracellular matrix (ECM) components and the seeding of cells into 3D biodegradable scaffolds have an intrinsic shortcoming, low cell-scaffold ratios. We have developed a microporous membrane-based liver cell culture technique. Cell behaviors and tissue organization can be controlled by membrane geometry, and cell-dense thick tissues can be reconstructed by layering cells cultured on biodegradable microporous membranes. Applications extend from liver parenchymal cell monoculture to multi-cell type cultures for the reconstruction of 3D functional liver tissue. This review focuses on the expanding role for microporous membranes in liver tissue engineering, primarily from our research.

  17. Three dimensional reconstruction of starling flocks: an empirical investigation of collective animal behavior

    Science.gov (United States)

    Giardina, Irene

    2009-03-01

    Bird flocking is a striking example of animal collective behaviour: thousands of birds gather above the roosting site, forming sharp-bordered flocks, which wheel and turn with remarkable coherence and synchronization. Despite an increasing theoretical interest, empirical investigations of collective motion have been limited so far by the difficulties of getting data on large systems. By means of stereoscopic photography and using statistical mechanics, optimization theory and computer vision techniques, we have measured for the first time the three-dimensional positions and trajectories of individual birds in groups of up to three thousands elements. This allowed us to analyze global morphological properties of the flocks, as well as structural and dynamical properties. Most notably, we investigated the nature of the inter-individual interaction. We found that the interaction between birds does not depend on their mutual metric distance, as most current models and theories assume, but rather on the topological distance (number of intermediate neighbors). In fact, we discovered that each individual interacts on average with a fixed number of neighbors (six-seven), rather than with all neighbors within a fixed metric distance. We argue that a topological interaction of this kind is indispensable to maintain flock's cohesion against the large density changes caused by external perturbations, typically predation. More recently, we characterized the velocity field, and computed dynamical observables. We showed that flocks exhibit long range correlations, which are a signature of their remarkable collective behavior.

  18. Characterization and three-dimensional reconstruction of synthetic bone model foams

    Energy Technology Data Exchange (ETDEWEB)

    Gómez, S. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Vlad, M.D. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Faculty of Medical Bioengineering, “Gr. T. Popa” University of Medicine and Pharmacy, Str. Kogalniceanu 9-13, 700454 Iasi (Romania); López, J. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Navarro, M. [Centre de Biotecnologia Animal i de Teràpia Gènica (CBATEG), Departament de Sanitat i d' Anatomia Animals, Universitat Autònoma de Barcelona, E-08193 Bellaterra, Cerdanyola del Vallès (Spain); Fernández, E., E-mail: enrique.fernandez@upc.edu [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain)

    2013-08-01

    Sawbones© open-cell foams with different porosity grades are being used as synthetic bone-like models for in vitro mechanical and infiltration experiments. However, a comprehensive characterization of these foams is not available and there is a lack of reliable information about them. For this reason two of these foams (Refs. 1522-505 and -507) have been characterized at the micro architectural level by scanning electron microscopy, computed tomography and image data analysis. BoneJ open software and ImageJ open software were used to obtain the characteristic histomorphometric parameters and the three dimensional virtual models of the foams. The results showed that both foams, while having different macro porosities, appeared undistinguishable at the micro scale. Moreover, the micro structural features resembled those of osteoporotic rather than healthy trabecular bone. It is concluded that Sawbones© foams behave reasonably as synthetic bone-like models. Consequently, their use is recommended for in vitro comparison purposes of both mechanical and infiltration testing performed in real vertebra. Finally, the virtual models obtained, which are available under request, can favour comparisons between future self-similar in vitro experiments and computer simulations. - Highlights: • Sawbones© model foams have been scanned by μ-CT. • Histomorphometric indices and 3D virtual models have been obtained. • The results will be of use to understand biocement vertebra infiltration studies.

  19. A three-dimensional dose-distribution estimation system using computerized image reconstruction

    International Nuclear Information System (INIS)

    Nishijima, Akihiko; Kidoya, Eiji; Komuro, Hiroyuki; Tanaka, Masato; Asada, Naoki.

    1990-01-01

    In radiotherapy planning, three dimensional (3-D) estimation of dose distribution has been very troublesome and time-consuming. To solve this problem, a simple and fast 3-D dose distribution image using a computer and Charged Couple Device (CCD) camera was developed. A series of X-ray films inserted in the phantom using a linear accelerator unit was exposed. The degree of film density was degitized with a CCD camera and a minicomputer (VAX 11-750). After that these results were compared with the present depth dose obtained by a JARP type dosimeter, with a dose error being less than 2%. The 3-D dose distribution image could accurately depict the density changes created by aluminum and air put into the phantom. The contrast resolution of the CCD camera seemed to be superior to the convention densitometer in the low-to-intermediate contrast range. In conclusion, our method seem to be very fast and simple for obtaining 3-D dose distribution images and is very effective when compared with the conventional method. (author)

  20. Limited-angle three-dimensional reconstructions using Fourier transform iterations and Radon transform iterations

    International Nuclear Information System (INIS)

    Tam, K.C.; Perez-Mendez, V.

    1981-01-01

    The principles of limited-angle reconstruction of space-limited objects using the concepts of allowed cone and missing cone in Fourier space are discussed. The distortion of a point source resulting from setting the Fourier components in the missing cone to zero has been calculated mathematically, and its bearing on the convergence of an iteration scheme involving Fourier transforms has been analyzed in detail. it was found that the convergence rate is fairly insensitive to the position of the point source within the boundary of the object, apart from an edge effect which tends to enhance some parts of the boundary in reconstructing the object. Another iteration scheme involving Radon transforms was introduced and compared to the Fourier transform method in such areas as root mean square error, stability with respect to noise, and computer reconstruction time

  1. Three-dimensional flow field around and downstream of a subscale model rotating vertical axis wind turbine

    Science.gov (United States)

    Ryan, Kevin J.; Coletti, Filippo; Elkins, Christopher J.; Dabiri, John O.; Eaton, John K.

    2016-03-01

    Three-dimensional, three-component mean velocity fields have been measured around and downstream of a scale model vertical axis wind turbine (VAWT) operated at tip speed ratios (TSRs) of 1.25 and 2.5, in addition to a non-rotating case. The five-bladed turbine model has an aspect ratio (height/diameter) of 1 and is operated in a water tunnel at a Reynolds number based on turbine diameter of 11,600. Velocity fields are acquired using magnetic resonance velocimetry (MRV) at an isotropic resolution of 1/50 of the turbine diameter. Mean flow reversal is observed immediately behind the turbine for cases with rotation. The turbine wake is highly three-dimensional and asymmetric throughout the investigated region, which extends up to 7 diameters downstream. A vortex pair, generated at the upwind-turning side of the turbine, plays a dominant role in wake dynamics by entraining faster fluid from the freestream and aiding in wake recovery. The higher TSR case shows a larger region of reverse flow and greater asymmetry in the near wake of the turbine, but faster wake recovery due to the increase in vortex pair strength with increasing TSR. The present measurement technique also provides detailed information about flow in the vicinity of the turbine blades and within the turbine rotor. The details of the flow field around VAWTs and in their wakes can inform the design of high-density VAWT wind farms, where wake interaction between turbines is a principal consideration.

  2. Towards a d-bar reconstruction method for three-dimensional EIT

    DEFF Research Database (Denmark)

    Cornean, Horia Decebal; Knudsen, Kim

    here. It is shown that exponentially growing solutions exist for low complex frequencies without imposing any regularity assumption on the conductivity. Further, a reconstruction method for conductivities close to a constant is given. In this method the complex frequency is taken to zero instead...

  3. THREE-DIMENSIONAL TOMOGRAPHIC RECONSTRUCTION OF FOUNDRY ARTICLES ON LIMITED MODEL AND EXPERIMENTAL DATA

    Directory of Open Access Journals (Sweden)

    V. L. Vengrinovich

    2009-01-01

    Full Text Available The ways of overcoming of lack of source information, The ways of overcoming of lack of source information, allowing to reduce energy of primary X-radiation, necessary  for radiography and to provide high quality of reconstruction, are offered.

  4. Cost-effective system for facial imaging and three-dimensional reconstruction

    Science.gov (United States)

    Shokouhi, S. B.; Monro, D. M.; Sherlock, Barry G.

    1998-06-01

    Three dimensional (3-D) images have recently received wide attention in applications involving medical treatment. Most current 3-D imaging methods focus on the internal organs of the body. However, several medical image applications such as plastic surgery, body deformities, rehabilitation, dental surgery and orthodontics, make use of the surface contours of the body. Several techniques are currently available for producing 3-D images of the body surface and most of the systems which implement these techniques are expensive, requiring complex equipment with highly trained operators. The research involves the development of a simple, low cost and non-invasive contour capturing method for facial surfaces. This is achieved using the structured light technique, employing a standard commercial slide projector, CCD camera and a frame-grabber card linked to a PC. Structured light has already been used for many applications, but only to a limited extent in the clinical environment. All current implementations involve extensive manual intervention by highly skilled operators and this has proven to be a serious hindrance to clinical acceptance of 3-D imaging. A primary objective of this work is to minimize the amount of manual intervention required, so that the system can be used by clinicians who do not have specialist training in the use of this equipment. The eventual aim is to provide a software assisted surgical procedure, which by merging the facial data, allows the manipulation of soft tissue and gives the facility to predict and monitor post-surgical appearance. The research focuses on how the images are obtained using the structured light optic system and the subsequent image processing of data to give a realistic 3-D image.

  5. Navigator channel adaptation to reconstruct three dimensional heart volumes from two dimensional radiotherapy planning data

    International Nuclear Information System (INIS)

    Ng, Angela; Nguyen, Thao-Nguyen; Moseley, Joanne L; Hodgson, David C; Sharpe, Michael B; Brock, Kristy K

    2012-01-01

    Biologically-based models that utilize 3D radiation dosimetry data to estimate the risk of late cardiac effects could have significant utility for planning radiotherapy in young patients. A major challenge arises from having only 2D treatment planning data for patients with long-term follow-up. In this study, we evaluate the accuracy of an advanced deformable image registration (DIR) and navigator channels (NC) adaptation technique to reconstruct 3D heart volumes from 2D radiotherapy planning images for Hodgkin's Lymphoma (HL) patients. Planning CT images were obtained for 50 HL patients who underwent mediastinal radiotherapy. Twelve image sets (6 male, 6 female) were used to construct a male and a female population heart model, which was registered to 23 HL 'Reference' patients' CT images using a DIR algorithm, MORFEUS. This generated a series of population-to-Reference patient specific 3D deformation maps. The technique was independently tested on 15 additional 'Test' patients by reconstructing their 3D heart volumes using 2D digitally reconstructed radiographs (DRR). The technique involved: 1) identifying a matching Reference patient for each Test patient using thorax measurements, 2) placement of six NCs on matching Reference and Test patients' DRRs to capture differences in significant heart curvatures, 3) adapting the population-to-Reference patient-specific deformation maps to generate population-to-Test patient-specific deformation maps using linear and bilinear interpolation methods, 4) applying population-to-Test patient specific deformation to the population model to reconstruct Test-patient specific 3D heart models. The percentage volume overlap between the NC-adapted reconstruction and actual Test patient's true heart volume was calculated using the Dice coefficient. The average Dice coefficient expressed as a percentage between the NC-adapted and actual Test model was 89.4 ± 2.8%. The modified NC adaptation

  6. Computed myography: three-dimensional reconstruction of motor functions from surface EMG data

    International Nuclear Information System (INIS)

    Doel, Kees van den; Ascher, Uri M; Pai, Dinesh K

    2008-01-01

    We describe a methodology called computed myography to qualitatively and quantitatively determine the activation level of individual muscles by voltage measurements from an array of voltage sensors on the skin surface. A finite element model for electrostatics simulation is constructed from morphometric data. For the inverse problem, we utilize a generalized Tikhonov regularization. This imposes smoothness on the reconstructed sources inside the muscles and suppresses sources outside the muscles using a penalty term. Results from experiments with simulated and human data are presented for activation reconstructions of three muscles in the upper arm (biceps brachii, bracialis and triceps). This approach potentially offers a new clinical tool to sensitively assess muscle function in patients suffering from neurological disorders (e.g., spinal cord injury), and could more accurately guide advances in the evaluation of specific rehabilitation training regimens

  7. Computed myography: three-dimensional reconstruction of motor functions from surface EMG data

    Science.gov (United States)

    van den Doel, Kees; Ascher, Uri M.; Pai, Dinesh K.

    2008-12-01

    We describe a methodology called computed myography to qualitatively and quantitatively determine the activation level of individual muscles by voltage measurements from an array of voltage sensors on the skin surface. A finite element model for electrostatics simulation is constructed from morphometric data. For the inverse problem, we utilize a generalized Tikhonov regularization. This imposes smoothness on the reconstructed sources inside the muscles and suppresses sources outside the muscles using a penalty term. Results from experiments with simulated and human data are presented for activation reconstructions of three muscles in the upper arm (biceps brachii, bracialis and triceps). This approach potentially offers a new clinical tool to sensitively assess muscle function in patients suffering from neurological disorders (e.g., spinal cord injury), and could more accurately guide advances in the evaluation of specific rehabilitation training regimens.

  8. Three-dimensional reconstruction of rat dermal blood vessels in vivo

    Science.gov (United States)

    Barton, Jennifer K.; Izatt, Joseph A.; Kulkarni, Manish D.; Welch, Ashley J.

    1997-05-01

    We performed imaging and reconstruction of dermal and subdermal blood vessels in a rat skin flap window model. The window model consists of a double thickness of dorsal skin which is sutured to a holding fixture. A 1 cm circle of skin is removed from one thickness, exposing the dermal blood vessels of the opposing side. An optical coherence tomography system operating at 1310 nm was used to image the blood vessels. A series of transverse images of the window model characterized sections of tissue. Off-the-shelf software for desktop and workstation computers was used to preprocess the images, identify and reconstruct blood vessels, and to extract parameters such depth, diameter, and percent volume of blood vessels. Such parameters may be of interest in developing improved treatments for vascular disorders such as port wine stains.

  9. Three-Dimensional Reconstruction of the Bony Nasolacrimal Canal by Automated Segmentation of Computed Tomography Images.

    Directory of Open Access Journals (Sweden)

    Lucia Jañez-Garcia

    Full Text Available To apply a fully automated method to quantify the 3D structure of the bony nasolacrimal canal (NLC from CT scans whereby the size and main morphometric characteristics of the canal can be determined.Cross-sectional study.36 eyes of 18 healthy individuals.Using software designed to detect the boundaries of the NLC on CT images, 36 NLC reconstructions were prepared. These reconstructions were then used to calculate NLC volume. The NLC axis in each case was determined according to a polygonal model and to 2nd, 3rd and 4th degree polynomials. From these models, NLC sectional areas and length were determined. For each variable, descriptive statistics and normality tests (Kolmogorov-Smirnov and Shapiro-Wilk were established.Time for segmentation, NLC volume, axis, sectional areas and length.Mean processing time was around 30 seconds for segmenting each canal. All the variables generated were normally distributed. Measurements obtained using the four models polygonal, 2nd, 3rd and 4th degree polynomial, respectively, were: mean canal length 14.74, 14.3, 14.80, and 15.03 mm; mean sectional area 15.15, 11.77, 11.43, and 11.56 mm2; minimum sectional area 8.69, 7.62, 7.40, and 7.19 mm2; and mean depth of minimum sectional area (craniocaudal 7.85, 7.71, 8.19, and 8.08 mm.The method proposed automatically reconstructs the NLC on CT scans. Using these reconstructions, morphometric measurements can be calculated from NLC axis estimates based on polygonal and 2nd, 3rd and 4th polynomial models.

  10. Reconstruction of a three-dimensional object from its conoscopic hologram

    Science.gov (United States)

    Mugnier, Laurent M.; Sirat, Gabriel Y.

    1992-12-01

    Conoscopic holography is a method for recording holograms with incoherent light, first presented in 1985. Its applications range from 3D microscopy to 3D satellite imaging and include robotics. The Point Spread Function (PSF) is a Gabor Zone Pattern, which is known to have zeros in Fourier space. We present an experimental technique to obtain an invertible PSF with an experimental image reconstruction, and an original algorithm to find the object shape, validated with both simulations and first experimental results.

  11. Three-Dimensional Reconstruction of the S885A Mutant of Human Mitochondrial Lon Protease

    Czech Academy of Sciences Publication Activity Database

    Kereiche, S.; Kováčik, L.; Pevala, V.; Ambro, L.; Bellová, J.; Kutejová, Eva; Raška, I.

    2014-01-01

    Roč. 60, č. 2014 (2014), s. 62-65 ISSN 0015-5632 R&D Projects: GA MŠk(CZ) EE2.3.30.0030; GA MŠk(CZ) ED1.1.00/02.0109 Institutional support: RVO:61388971 Keywords : transmission electron microscopy * 3D reconstruction * AAA plus protease Subject RIV: CE - Biochemistry Impact factor: 1.000, year: 2014

  12. Fast parallel algorithm for three-dimensional distance-driven model in iterative computed tomography reconstruction

    International Nuclear Information System (INIS)

    Chen Jian-Lin; Li Lei; Wang Lin-Yuan; Cai Ai-Long; Xi Xiao-Qi; Zhang Han-Ming; Li Jian-Xin; Yan Bin

    2015-01-01

    The projection matrix model is used to describe the physical relationship between reconstructed object and projection. Such a model has a strong influence on projection and backprojection, two vital operations in iterative computed tomographic reconstruction. The distance-driven model (DDM) is a state-of-the-art technology that simulates forward and back projections. This model has a low computational complexity and a relatively high spatial resolution; however, it includes only a few methods in a parallel operation with a matched model scheme. This study introduces a fast and parallelizable algorithm to improve the traditional DDM for computing the parallel projection and backprojection operations. Our proposed model has been implemented on a GPU (graphic processing unit) platform and has achieved satisfactory computational efficiency with no approximation. The runtime for the projection and backprojection operations with our model is approximately 4.5 s and 10.5 s per loop, respectively, with an image size of 256×256×256 and 360 projections with a size of 512×512. We compare several general algorithms that have been proposed for maximizing GPU efficiency by using the unmatched projection/backprojection models in a parallel computation. The imaging resolution is not sacrificed and remains accurate during computed tomographic reconstruction. (paper)

  13. Image-based reconstruction of three-dimensional myocardial infarct geometry for patient-specific modeling of cardiac electrophysiology

    Energy Technology Data Exchange (ETDEWEB)

    Ukwatta, Eranga, E-mail: eukwatt1@jhu.edu; Arevalo, Hermenegild; Pashakhanloo, Farhad; Prakosa, Adityo; Vadakkumpadan, Fijoy [Institute for Computational Medicine, Johns Hopkins University, Baltimore, Maryland 21205 and Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205 (United States); Rajchl, Martin [Department of Computing, Imperial College London, London SW7 2AZ (United Kingdom); White, James [Stephenson Cardiovascular MR Centre, University of Calgary, Calgary, Alberta T2N 2T9 (Canada); Herzka, Daniel A.; McVeigh, Elliot [Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205 (United States); Lardo, Albert C. [Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205 and Division of Cardiology, Johns Hopkins Institute of Medicine, Baltimore, Maryland 21224 (United States); Trayanova, Natalia A. [Institute for Computational Medicine, Johns Hopkins University, Baltimore, Maryland 21205 (United States); Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205 (United States); Department of Biomedical Engineering, Johns Hopkins Institute of Medicine, Baltimore, Maryland 21205 (United States)

    2015-08-15

    Purpose: Accurate three-dimensional (3D) reconstruction of myocardial infarct geometry is crucial to patient-specific modeling of the heart aimed at providing therapeutic guidance in ischemic cardiomyopathy. However, myocardial infarct imaging is clinically performed using two-dimensional (2D) late-gadolinium enhanced cardiac magnetic resonance (LGE-CMR) techniques, and a method to build accurate 3D infarct reconstructions from the 2D LGE-CMR images has been lacking. The purpose of this study was to address this need. Methods: The authors developed a novel methodology to reconstruct 3D infarct geometry from segmented low-resolution (Lo-res) clinical LGE-CMR images. Their methodology employed the so-called logarithm of odds (LogOdds) function to implicitly represent the shape of the infarct in segmented image slices as LogOdds maps. These 2D maps were then interpolated into a 3D image, and the result transformed via the inverse of LogOdds to a binary image representing the 3D infarct geometry. To assess the efficacy of this method, the authors utilized 39 high-resolution (Hi-res) LGE-CMR images, including 36 in vivo acquisitions of human subjects with prior myocardial infarction and 3 ex vivo scans of canine hearts following coronary ligation to induce infarction. The infarct was manually segmented by trained experts in each slice of the Hi-res images, and the segmented data were downsampled to typical clinical resolution. The proposed method was then used to reconstruct 3D infarct geometry from the downsampled images, and the resulting reconstructions were compared with the manually segmented data. The method was extensively evaluated using metrics based on geometry as well as results of electrophysiological simulations of cardiac sinus rhythm and ventricular tachycardia in individual hearts. Several alternative reconstruction techniques were also implemented and compared with the proposed method. Results: The accuracy of the LogOdds method in reconstructing 3D

  14. [Reconstruction of mandibular bone defects using three-dimensional skull model and individualized titanium prosthetics from computer assisted design].

    Science.gov (United States)

    Gong, Zhenyu; Li, Guohua; Liu, Yanpu; He, Lisheng; Zhou, Bing; Li, Dichen

    2012-01-01

    To evaluate the feasibility and effectiveness of reconstruction of mandibular bone defects using three-dimensional skull model and individualized titanium prosthetics from computer assisted design. Between July 2002 and November 2009, 9 patients with mandibular defects accepted restorative operation using individualized bone prosthetics. Among 9 cases, 4 were male and 5 were female, aged 19-55 years. The causes of mandibulectomy were benign lesions in 8 patients and carcinoma of gingival in 1 patient. Mandibular defects exceeded midline in 2 cases, involved condylar in 4 cases, and was limited in one side without involvement of temporo-mandibular joint in 3 cases. The range of bone defects was 9.0 cm x 2.5 cm-17.0 cm x 2.5 cm. The preoperative spiral CT scan was performed and three-dimensional skull model was obtained. Titanium prosthetics of mandibular defects were designed and fabricated through multi-step procedure of reverse engineering and rapid prototyping. Titanium prosthetics were used for one-stage repair of mandibular bone defects, then two-stage implant denture was performed after 6 months. The individualized titanium prosthetics were inserted smoothly with one-stage operative time of 10-23 minutes. All the cases achieved incision healing by first intention and the oblique mandibular movement was corrected. They all got satisfactory face, had satisfactory contour and good occlusion. In two-stage operation, no loosening of the implants was observed and the abutments were in good position with corresponding teeth which were designed ideally before operation. All cases got satisfactory results after 1-9 years of follow-up. At last follow-up, X-ray examinations showed no loosening of implants with symmetry contour. Computer assisted design and three-dimensional skull model techniques could accomplish the design and manufacture of individualized prosthetic for the repair of mandibular bone defects.

  15. Large scale three-dimensional reconstruction of an entire Caenorhabditis elegans larva using AutoCUTS-SEM.

    Science.gov (United States)

    Li, Xixia; Ji, Gang; Chen, Xi; Ding, Wei; Sun, Lei; Xu, Wei; Han, Hua; Sun, Fei

    2017-11-01

    Large scale, high resolution three dimensional (3D) ultrastructural reconstruction of cells and tissues has become increasingly important to our understanding of complex biological systems. There have been a few partial 3D ultra-structures of Caenorhabditis elegans (C. elegans) reported, however 3D reconstruction of a whole nematode has never been achieved. Here, we independently developed a technique called automatic collector of ultrathin sections scanning electron microscopy and using this methodology, generated a 3D reconstruction of an entire C. elegans larva with 100 nm axial and 15 nm lateral resolution. Compared to the current available ATUM (automated tape-collecting ultramicrotome) technique, our work provides another alternative complete solution that can be applied to obtain large scale 3D ultrastructure of tissues. Our workflow includes an automated hardware system for high throughput serial section collection, a software package for automatic SEM imaging, and an image reconstruction program. These combined techniques can now be used together to rapidly provide access to understand the anatomy of the whole nematodes. Copyright © 2017 Elsevier Inc. All rights reserved.

  16. Reduced-order modeling for rotating rotor-bearing systems with cracked impellers using three-dimensional finite element models

    Science.gov (United States)

    Wang, Shuai; Wang, Yu; Zi, Yanyang; Li, Bing; He, Zhengjia

    2015-10-01

    A novel reduced-order modeling method is presented in this paper for dynamics analysis of rotating impeller-shaft-bearing assembly with cracked impellers. Based on three-dimensional finite element model, the complex component mode synthesis (CMS) method is employed to generate an efficient reduced-order model (ROM) for studying the effects of crack on the global vibration of the rotating assembly. First, a modeling framework for impeller-shaft-bearing systems in rotating frame is presented. Rotational effects, including Coriolis matrix and centrifugal softening, have been taken into account. Then, the governing equation of motion of the damped gyroscopic system is reduced by the complex CMS method. Finally, the obtained ROM is employed to study the effects of crack on assembly's vibration. During the steady-state response analysis, external excitations on the impeller due to rotor-stator interactions have been taken into account, which was however neglected in previous investigations on rotordynamics. Numerical results show that the lower-order eigenvalues and the unbalance response of the assembly are not sensitive to the local crack on impeller. Nevertheless, the flexible coupling between impeller and shaft becomes more complex when the air flow-induced excitations are considered. Under EO1 traveling wave excitations, a crack leads to slight changes in the assembly's response. In contrast, the effect of crack becomes significant when the assembly is excited by EO2 and higher EO excitations. Moreover, the nonlinear crack breathing effects affect the assembly's response obviously. Finally, a potential technique for detecting the crack on impeller during operation is discussed.

  17. Three-dimensional reconstruction of axonemal outer dynein arms in situ by electron tomography.

    Science.gov (United States)

    Lupetti, Pietro; Lanzavecchia, Salvatore; Mercati, David; Cantele, Francesca; Dallai, Romano; Mencarelli, Caterina

    2005-10-01

    We present here for the first time a 3D reconstruction of in situ axonemal outer dynein arms. This reconstruction has been obtained by electron tomography applied to a series of tilted images collected from metal replicas of rapidly frozen, cryofractured, and metal-replicated sperm axonemes of the cecidomid dipteran Monarthropalpus flavus. This peculiar axonemal model consists of several microtubular laminae that proved to be particularly suitable for this type of analysis. These laminae are sufficiently planar to allow the visualization of many dynein molecules within the same fracture face, allowing us to recover a significant number of equivalent objects and to improve the signal-to-noise ratio of the reconstruction by applying advanced averaging protocols. The 3D model we obtained showed the following interesting structural features: First, each dynein arm has two head domains that are almost parallel and are obliquely oriented with respect to the longitudinal axis of microtubules. The two heads are therefore positioned at different distances from the surface of the A-tubule. Second, each head domain consists of a series of globular subdomains that are positioned on the same plane. Third, a stalk domain originates as a conical region from the proximal head and ends with a small globular domain that contacts the B-tubule. Fourth, the stem region comprises several globular subdomains and presents two distinct points of anchorage to the surface of the A-tubule. Finally, and most importantly, contrary to what has been observed in isolated dynein molecules adsorbed to flat surfaces, the stalk and the stem domains are not in the same plane as the head.

  18. A rapid three-dimensional vortex micromixer utilizing self-rotation effects under low Reynolds number conditions

    CERN Document Server

    Che Hsin, Lin; Lung Ming, Fu; 10.1088/0960-1317/15/5/006

    2005-01-01

    This paper proposes a novel three-dimensional (3D) vortex micromixer for micro-total-analysis-systems ( mu TAS) applications which utilizes self-rotation effects to mix fluids in a circular chamber at low Reynolds numbers (Re). The microfluidic mixer is fabricated in a three-layer glass structure for delivering fluid samples in parallel. The fluids are driven into the circular mixing chamber by means of hydrodynamic pumps from two fluid inlet ports. The two inlet channels divide into eight individual channels tangent to a 3D circular chamber for the purpose of mixing. Numerical simulation of the microfluidic dynamics is employed to predict the self-rotation phenomenon and to estimate the mixing performance under various Reynolds number conditions. Experimental flow visualization by mixing dye samples is performed in order to verify the numerical simulation results. A good agreement is found to exist between the two sets of results. The numerical results indicate that the mixing performance can be as high as 9...

  19. Reconstruction of Interfering Waves from Three Dimensional Analysis of Their Interference Pattern

    Directory of Open Access Journals (Sweden)

    M. T. Tavassoli

    1997-04-01

    Full Text Available   Optical interferometry is being used as an efficient tool to analyse smooth surfaces for more than a century. Although, due to introduction of novel computer assisted analyzing techniques and array detectors, like CCD, the speed and the precision of processing have been increased tremendously, but the main equation involved is not changed. The main equation is the intensity distribution in the interference pattern of a plane reference wave and the required wave.   In the paper it is shown that by analysis of the interference pattern of two unknown waves in three dimension (which is possible for coherent waves it is possible to reconstruct each wave separately. This approach has several useful applications, namely, on can do without reference plane wave in the interferometric surface analysis and, it is possible to reconstruct an unknown wave by making it to interfere with itself. This is very useful in determining the profile of laser beams and erasing the effect of atmospheric disturbances on observing astronomical objects.

  20. Three-dimensional calcification reconstruction from a limited number of views

    Science.gov (United States)

    Maidment, Andrew D. A.; Albert, Michael; Conant, Emily F.; Feig, Stephen A.

    1996-04-01

    A method has been developed to allow mammographic differential diagnosis based upon the 3- D orientation and morphology of mammary calcifications. Two to seven digital radiographs of a cluster of calcifications are acquired on a prone stereotactic breast biopsy system. The images are segmented using a recursive region-growing algorithm. Inclusion of calcific material is dependent upon local statistics calculated over a region surrounding each calcification. Segmentation is aided by correlation of the calcifications in two or more views through analysis of their positions, sizes and shapes. The location of each calcification is determined geometrically; the shape of each calcification is calculated using the segmented images and a simulated annealing reconstruction method. Image segmentation and reconstruction can be reproducibly performed with an accuracy of 0.1 mm, which is sufficient to perform 3-D morphologic analysis. Biopsy specimens and in vivo calcifications have been examined. In instances where calcifications are associated with amass, we can distinguish preferentially peripherally distributed calcifications from homogeneously distributed calcifications. We have also been able to elucidate the linear distribution of calcifications contained within the ductal system. In a preliminary ROC study involving 3 radiologists and 26 lesions (5 malignant), specificity increased when 3-D images were included in the diagnostic evaluation, resulting in an increase of Az from 0.66 to 0.88 (p equals 0.0039).

  1. Three-dimensional reconstruction from cone beam projection by a block iterative technique

    Science.gov (United States)

    Peyrin, Francoise; Goutte, Robert; Amiel, Michel

    1991-07-01

    This work is concerned with truly 3D X-ray tomography. The method consists in the acquisition of an object's radiographs for different positions of an X-ray cone beam source. The image is then obtained by solving a 3D reconstruction problem from cone beam projections. When considering a series expansion approach, the problem is equivalent to the resolution of a linear system, presenting very particular characteristics in size and sparseness. The authors investigate the use of block iterative techniques which allow an efficient implementation of the algorithm on a parallel computer. Three different block iterative reconstruction schemes are developed. They can be used with or without simple constraints on the solution (positivity, amplitude, support...). Results obtained on simulated images allow comparison to the convergence properties of the different methods. Contrary to the conventional case in truly 3D X-ray tomography, different trajectories of the cone beam source are considered and the first results obtained on simulated objects are discussed.

  2. Digital three-dimensional reconstruction and ultrastructure of the mouse proximal tubule

    DEFF Research Database (Denmark)

    Zhai, X.Y.; Birn, H.; Jensen, K.B.

    2003-01-01

    , detailed analyses of normal mouse kidney structure and organization are lacking. This study describes the 3D organization and ultrastructural, segmental variation of the mouse kidney proximal tubule. A total of 160 proximal tubules in three C57/BL/6J mouse kidneys were analyzed on 800 serial sections from...... each kidney from the surface to the inner stripe of the outer zone of medulla. All tubules were reconstructed in 3D and visualized by interactive computer graphics. A quantitative ultrastructural analysis of the mouse proximal tubule at every 300 to 400 micro m was performed. The 3D representation....... In the medullary rays, these are arranged in layers outside the clusters of more superficial tubules. In contrast to rat and human kidney, no major segmental variation in the ultrastructure of the proximal tubule was identified, and no parameters enabled definition of distinct segments in this strain of mice...

  3. New method of three-dimensional reconstruction from two-dimensional MR data sets

    International Nuclear Information System (INIS)

    Wrazidlo, W.; Schneider, S.; Brambs, H.J.; Richter, G.M.; Kauffmann, G.W.; Geiger, B.; Fischer, C.

    1989-01-01

    In medical diagnosis and therapy, cross-sectional images are obtained by means of US, CT, or MR imaging. The authors propose a new solution to the problem of constructing a shape over a set of cross-sectional contours from two-dimensional (2D) MR data sets. The authors' method reduces the problem of constructing a shape over the cross sections to one of constructing a sequence of partial shapes, each of them connecting two cross sections lying on adjacent planes. The solution makes use of the Delaunay triangulation, which is isomorphic in that specific situation. The authors compute this Delaunay triangulation. Shape reconstruction is then achieved section by pruning Delaunay triangulations

  4. Prenatal diagnosis of chondrodysplasia punctata tibia-metacarpal type using multidetector CT and three-dimensional reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Miyazaki, Osamu [National Centre for Child Health and Development, Department of Radiology, Tokyo (Japan); Nishimura, Gen [Tokyo Metropolitan Kiyose Children' s Hospital, Department of Radiology, Tokyo (Japan); Sago, Haruhiko; Watanabe, Noriyoshi; Ebina, Shunsuke [National Centre for Child Health and Development, Department of Perinatal Medicine and Maternal Care, Tokyo (Japan)

    2007-11-15

    We report a case of chondrodysplasia punctata tibia-metacarpal type (CDP-TM) that was diagnosed prenatally using multidetector CT (MDCT) with three-dimensional (3-D) CT reconstructions. Prenatal US had shown severe thoracic hypoplasia and rhizomelic shortening of the limbs, raising the suspicion of thanatophoric dysplasia. However, MDCT showed punctate calcifications in the epiphyseal cartilage of the humeri and femora, carpal bones, and paravertebral region. On 3-D CT, the tibiae were much shorter than the fibulae, the humeri were very short and bowed, and severe platyspondyly was evident. These findings led to the diagnosis of CDP-TM. The diagnosis was confirmed on postnatal radiographs. Prenatal MDCT with 3-D images may make a useful contribution to prenatal diagnosis in selected fetuses with severe skeletal dysplasia. (orig.)

  5. Preoperative planning of thoracic surgery with use of three-dimensional reconstruction, rapid prototyping, simulation and virtual navigation.

    Science.gov (United States)

    Heuts, Samuel; Sardari Nia, Peyman; Maessen, Jos G

    2016-01-01

    For the past decades, surgeries have become more complex, due to the increasing age of the patient population referred for thoracic surgery, more complex pathology and the emergence of minimally invasive thoracic surgery. Together with the early detection of thoracic disease as a result of innovations in diagnostic possibilities and the paradigm shift to personalized medicine, preoperative planning is becoming an indispensable and crucial aspect of surgery. Several new techniques facilitating this paradigm shift have emerged. Pre-operative marking and staining of lesions are already a widely accepted method of preoperative planning in thoracic surgery. However, three-dimensional (3D) image reconstructions, virtual simulation and rapid prototyping (RP) are still in development phase. These new techniques are expected to become an important part of the standard work-up of patients undergoing thoracic surgery in the future. This review aims at graphically presenting and summarizing these new diagnostic and therapeutic tools.

  6. Comparative Study of the Three-Dimensional Thermodynamical Structure of the Inner Corona of Solar Minimum Carrington Rotations 1915 and 2081

    Science.gov (United States)

    Lloveras, Diego G.; Vásquez, Alberto M.; Nuevo, Federico A.; Frazin, Richard A.

    2017-10-01

    Using differential emission measure tomography (DEMT) based on time series of EUV images, we carry out a quantitative comparative analysis of the three-dimensional (3D) structure of the electron density and temperature of the inner corona (rarticles). They are characterized by plasma β≳1, and may be the result of the efficient dissipation of Alfvén waves at low coronal heights. The comparative analysis reveals that the low latitudes of the equatorial streamer belt of CR-1915 exhibit higher densities than for CR-2081. This cannot be explained by the systematic uncertainties. In addition, the southern hemisphere of the streamer belt of CR-1915 is characterized by higher temperatures and density scale heights than for CR-2081. On the other hand, the coronal hole region of CR-1915 shows lower temperatures than for CR-2081. The reported differences are in the range ≈ 10 - 25%, depending on the specific physical quantity and region that is compared, as fully detailed in the analysis. For other regions and/or physical quantities, the uncertainties do not allow assessing the thermodynamical differences between the two rotations. Future investigation will involve a DEMT analysis of other Carrington rotations selected from both epochs, and also a comparison of their tomographic reconstructions with magnetohydrodynamical simulations of the inner corona.

  7. Three-dimensional CT pyelography for planning of percutaneous nephrostolithotomy: accuracy of stone measurement, stone depiction and pelvicalyceal reconstruction

    International Nuclear Information System (INIS)

    Patel, Uday; Walkden, Richard Miles; Ghani, Khurshid R.; Anson, Ken

    2009-01-01

    Retrospective evaluation of computed tomographic (CT) pyelography before percutaneous nephrostolithotomy (PCNL). Twenty patients with renal calculi underwent CT pyelography using a dedicated protocol. Calculus size, uniformity of contrast excretion and accuracy of calculus and pelvicalyceal (PC) system reconstructions were scored and compared on axial and coronal maximum intensity projections (MIP) and volume reconstructions (VRmovie loops). After contrast medium administration, the size of calculi is accurate on axial images, but underestimated on coronal studies: mean 14.7 mm vs. 14.4 mm (axial) and 17.2 mm vs. 16.1 mm (coronal) for measurements before and after enhancement, respectively (p = 0.11 and 0.03). Uniform contrast medium excretion (median 228 HU; 95% CI 209-266 HU) was sufficiently lower than calculus density (median 845 HU; 95% CI 457-1,193 HU) for precise calculus and pelvicalyceal reconstructions in 87% and 85%, respectively. Coronal MIP scans were rated best for calculus depiction (mean score 2.68 vs. 2.50 and 2.41 for coronal, axial and VRs, respectively; p = 0.14) and VR studies best for PC anatomy (mean score 4.4 vs. 3.73 and 2.89 for VR, coronal and axial studies, respectively; p = <0.0001). Three-dimensional CT pyelography can accurately demonstrate calculus position and spatial relationships of the collecting system before PCNL. (orig.)

  8. Three-dimensional fetal cephalometry: an evaluation of the reliability of cephalometric measurements based on three-dimensional CT reconstructions and on dry skulls of sheep fetuses.

    Science.gov (United States)

    Papadopoulos, Moschos A; Jannowitz, Christina; Boettcher, Peter; Henke, Julia; Stolla, Rudolf; Zeilhofer, Hans-Florian; Kovacs, Laszlo; Erhardt, Wolf; Biemer, Edgar; Papadopulos, Nikolaos A

    2005-08-01

    To develop a 3D CT cephalometric analysis for maxillary growth evaluation of sheep fetuses operated in utero, and to evaluate the reliability of this analysis by comparing it with a direct cephalometric analysis on dry skulls. Five skulls of operated sheep fetuses were used, which after preparation were CT scanned and a 3D reconstruction was performed. A cephalometric analysis was performed directly on the dry skulls as well as on the reconstructed 3D CT images. In total, 56 linear distances were measured. In order to access the error of the method, the procedure was repeated after a 2 week interval. The comparison between the direct cephalometric and the 3D CT analysis revealed that only 5 variables were significantly different. The evaluation of the error of method revealed that 7 variables of the direct cephalometric analysis and none of the 3D CT analysis differed significantly. According to the results of this study, it can be concluded that a cephalometric analysis on 3D CT reconstructed images of the skulls includes fewer identification errors and seems to be an accurate and reliable method that could be regarded at least as equivalent to conventional cephalometry.

  9. Application of three-dimensional reconstruction technology in establishment of atlas space model and sex determination

    International Nuclear Information System (INIS)

    Zhou Jianying; Tian Yong; He Qing; Li Youqiong; Han Qing; Cheng Kailiang

    2013-01-01

    Objective: To establish the method of using the atlas morphological indexes for sex determination in Jilin province and to evaluate its effect. Methods: The clinic neck CT images were used to reconstruct the 3D image of atlas. A total of 27 linear measurement on 8 aspects of the atlas were measured and the ratios were calculated. The 14 items were selected. Results: Of the total 27 linear measurements, 14 were sexually dimorphic (P<0.05), and the accuracies of sex determination of 27 indexes were 52.0% -89.3% . The highest accuracy was width of vertebral body (86.7% ). A function with variables predicting sex with 96.8% accuracy was derived by using stepwise method of discriminant function analysis: Y=1.308W - 0.409CDF - 0.469LTPSD - 0.849LUACD + 0.478RUACD + 0.332RDACD + 0.363ATH - 0.334PTH - 0.236PAL. Conclusion: The method of using atlas traits for sex determination in Jilin province is practicable. (authors)

  10. Age-Based Comparison of Human Dendritic Spine Structure Using Complete Three-Dimensional Reconstructions

    Science.gov (United States)

    Benavides-Piccione, Ruth; Fernaud-Espinosa, Isabel; Robles, Victor; Yuste, Rafael; DeFelipe, Javier

    2013-01-01

    Dendritic spines of pyramidal neurons are targets of most excitatory synapses in the cerebral cortex. Recent evidence suggests that the morphology of the dendritic spine could determine its synaptic strength and learning rules. However, unfortunately, there are scant data available regarding the detailed morphology of these structures for the human cerebral cortex. In the present study, we analyzed over 8900 individual dendritic spines that were completely 3D reconstructed along the length of apical and basal dendrites of layer III pyramidal neurons in the cingulate cortex of 2 male humans (aged 40 and 85 years old), using intracellular injections of Lucifer Yellow in fixed tissue. We assembled a large, quantitative database, which revealed a major reduction in spine densities in the aged case. Specifically, small and short spines of basal dendrites and long spines of apical dendrites were lost, regardless of the distance from the soma. Given the age difference between the cases, our results suggest selective alterations in spines with aging in humans and indicate that the spine volume and length are regulated by different biological mechanisms. PMID:22710613

  11. Three-dimensional Reconstruction of the Microstructure of Human Acellular Nerve Allograft.

    Science.gov (United States)

    Zhu, Shuang; Zhu, Qingtang; Liu, Xiaolin; Yang, Weihong; Jian, Yutao; Zhou, Xiang; He, Bo; Gu, Liqiang; Yan, Liwei; Lin, Tao; Xiang, Jianping; Qi, Jian

    2016-08-01

    The exact inner 3D microstructure of the human peripheral nerve has been a mystery for decades. Therefore, it has been difficult to solve several problems regarding peripheral nerve injury and repair. We used high-resolution X-ray computed microtomography (microCT) to scan a freeze-dried human acellular nerve allograft (hANA). The microCT images were then used to reconstruct a 3D digital model, which was used to print a 3D resin model of the nerve graft. The 3D digital model of the hANA allowed visualization of all planes. The magnified 3D resin model clearly showed the nerve bundles and basement membrane tubes of the hANA. Scanning electron microscopy (SEM) was used to analyse the microstructure of the hANA. Compared to the SEM images, the microCT image clearly demonstrated the microstructure of the hANA cross section at a resolution of up to 1.2 μm. The 3D digital model of the hANA facilitates a clear and easy understanding of peripheral nerve microstructure. Furthermore, the enlarged 3D resin model duplicates the unique inner structure of each individual hANA. This is a crucial step towards achieving 3D printing of a hANA or nerve that can be used as a nerve graft.

  12. The Importance of a Conchal Bowl Element in the Fabrication of a Three-Dimensional Framework in Total Auricular Reconstruction

    Directory of Open Access Journals (Sweden)

    Young Soo Kim

    2013-05-01

    Full Text Available BackgroundTo construct a sophisticated three-dimensional framework, numerous modifications have been reported in the literature. However, most surgeons have paid little attention to the anatomical configuration of the concha and more to its deepness and hollowness, leading to unsatisfactory outcomes.MethodsFor a configuration of the concha that is definitely anatomical, the author further developed and employed the conchal bowl element, which has been used by several surgeons although the results have not been published elsewhere. The author constructed the conchal bowl element in one of three patterns according to the amount of available cartilages: one block, two-pieces, or a cymba bowl element only. A total of 20 patients underwent auricular reconstruction using a costal cartilage framework between 2009 and 2012. The 8 earliest reconstructions were performed without a conchal bowl element and the latter 12 with a conchal bowl element. The patients were followed up for more than 1 year. The aesthetic results were scored by evaluating characteristics involving the stability of the crus helicis, the conchal definition, and the smoothness of the helical curve.ResultsThe ears reconstructed early without a conchal bowl element showed a shallow and one or two incompletely separated concha with an obliterated cymba conchal space. They also did not have a realistic or smooth curve of the helix because of an unstable crus helicis. However, ears reconstructed later with the concha bowl element showed a definite crus helicis, deep cymba conchal space, and smooth helical curve.ConclusionsThe construction of the conchal bowl element is simple, not time-consuming procedure. It is suggested that the conchal bowl element must be constructed and attached to the main framework for natural configuration of the reconstructed ear.

  13. Correction for Patient Sway in Radiographic Biplanar Imaging for Three-Dimensional Reconstruction of the Spine: In Vitro Study of a New Method

    Energy Technology Data Exchange (ETDEWEB)

    Legaye, J. (Dept. of Orthopedic Surgery, Univ. of Louvain - Mont-Godinne, Yvoir (Belgium)); Saunier, P.; Dumas, R. (Univ. of Lyon 1 - INRETS, Villeurbanne (France)); Vallee, C. (Radiology Dept., Hpital Raymond Poincare, Garches (France))

    2009-08-15

    Background: Three-dimensional (3D) reconstructions of the spine in the upright position are classically obtained using two-dimensional, non-simultaneous radiographic imaging. However, a subject's sway between exposures induces inaccuracy in the 3D reconstructions. Purpose: To evaluate the impact of patient sway between successive radiographic exposures, and to test if 3D reconstruction accuracy can be improved by a corrective method with simultaneous Moire-X-ray imaging. Material and Methods: Using a calibrated deformable phantom perceptible by both techniques (Moire and X-ray), the 3D positional and rotational vertebral data from 3D reconstructions with and without the corrective procedure were compared to the corresponding data of computed tomography (CT) scans, considered as a reference. All were expressed in the global axis system, as defined by the Scoliosis Research Society. Results: When a sagittal sway of 10 deg occurred between successive biplanar X-rays, the accuracy of the 3D reconstruction without correction was 8.8 mm for the anteroposterior vertebral locations and 6.4 deg for the sagittal orientations. When the corrective method was applied, the accuracy was improved to 1.3 mm and 1.5 deg, respectively. Conclusion: 3D accuracy improved significantly by using the corrective method, whatever the subject's sway. This technique is reliable for clinical appraisal of the spine, if the subject's sway does not exceed 10 deg. For greater sway, improvement persists, but a risk of lack of accuracy exists

  14. Three-Dimensional Rotating Wall Vessel-Derived Cell Culture Models for Studying Virus-Host Interactions

    Directory of Open Access Journals (Sweden)

    Jameson K. Gardner

    2016-11-01

    Full Text Available The key to better understanding complex virus-host interactions is the utilization of robust three-dimensional (3D human cell cultures that effectively recapitulate native tissue architecture and model the microenvironment. A lack of physiologically-relevant animal models for many viruses has limited the elucidation of factors that influence viral pathogenesis and of complex host immune mechanisms. Conventional monolayer cell cultures may support viral infection, but are unable to form the tissue structures and complex microenvironments that mimic host physiology and, therefore, limiting their translational utility. The rotating wall vessel (RWV bioreactor was designed by the National Aeronautics and Space Administration (NASA to model microgravity and was later found to more accurately reproduce features of human tissue in vivo. Cells grown in RWV bioreactors develop in a low fluid-shear environment, which enables cells to form complex 3D tissue-like aggregates. A wide variety of human tissues (from neuronal to vaginal tissue have been grown in RWV bioreactors and have been shown to support productive viral infection and physiological meaningful host responses. The in vivo-like characteristics and cellular features of the human 3D RWV-derived aggregates make them ideal model systems to effectively recapitulate pathophysiology and host responses necessary to conduct rigorous basic science, preclinical and translational studies.

  15. Three-Dimensional Reconstruction of Cloud-to-Ground Lightning Using High-Speed Video and VHF Broadband Interferometer

    Science.gov (United States)

    Li, Yun; Qiu, Shi; Shi, Lihua; Huang, Zhengyu; Wang, Tao; Duan, Yantao

    2017-12-01

    The time resolved three-dimensional (3-D) spatial reconstruction of lightning channels using high-speed video (HSV) images and VHF broadband interferometer (BITF) data is first presented in this paper. Because VHF and optical radiations in step formation process occur with time separation no more than 1 μs, the observation data of BITF and HSV at two different sites provide the possibility of reconstructing the time resolved 3-D channel of lightning. With the proposed procedures for 3-D reconstruction of leader channels, dart leaders as well as stepped leaders with complex multiple branches can be well reconstructed. The differences between 2-D speeds and 3-D speeds of leader channels are analyzed by comparing the development of leader channels in 2-D and 3-D space. Since return stroke (RS) usually follows the path of previous leader channels, the 3-D speeds of the return strokes are first estimated by combination with the 3-D structure of the preceding leaders and HSV image sequences. For the fourth RS, the ratios of the 3-D to 2-D RS speeds increase with height, and the largest ratio of the 3-D to 2-D return stroke speeds can reach 2.03, which is larger than the result of triggered lightning reported by Idone. Since BITF can detect lightning radiation in a 360° view, correlated BITF and HSV observations increase the 3-D detection probability than dual-station HSV observations, which is helpful to obtain more events and deeper understanding of the lightning process.

  16. Comparison of three dimensional isotropic and two dimensional conventional indirect MR arthrography for the diagnosis of rotator cuff tears

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Ji Hyun; Yoon, Young Cheol; Kwon, Jong Won; Yoo, Jae Chul [Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul (Korea, Republic of); Cha, Jang Kyu [Dept. of Radiology, Soonchunhyang University Bucheon Hospital, Bucheon (Korea, Republic of); Jee, Suk Kyoung [Joeun Madi Hospital, Seoul (Korea, Republic of)

    2014-12-15

    To compare the accuracy between a three-dimensional (3D) indirect isotropic T1-weighted fast spin-echo (FSE) magnetic resonance (MR) arthrography and a conventional two-dimensional (2D) T1-weighted sequences of indirect MR arthrography for diagnosing rotator cuff tears. The study was approved by our Institutional Review Board. In total, 205 patients who had undergone indirect shoulder MR arthrography followed by arthroscopic surgery for 206 shoulders were included in this study. Both conventional 2D T1-weighted FSE sequences and 3D isotropic T1-weighted FSE sequence were performed in all patients. Two radiologists evaluated the images for the presence of full- or partial-thickness tears in the supraspinatus-infraspinatus (SSP-ISP) tendons and tears in the subscapularis (SSC) tendons. Using the arthroscopic findings as the reference standard, the diagnostic performances of both methods were analyzed by the area under the receiver operating characteristic curve (AUC). Arthroscopy confirmed 165 SSP-ISP tendon tears and 103 SSC tendon tears. For diagnosing SSP-ISP tendon tears, the AUC values were 0.964 and 0.989 for the 2D sequences and 3D T1-weighted FSE sequence, respectively, in reader I and 0.947 and 0.963, respectively, in reader II. The AUC values for diagnosing SSC tendon tears were 0.921 and 0.925, respectively, for reader I and 0.856 and 0.860, respectively, for reader II. There was no significant difference between the AUC values of the 2D and 3D sequences in either reader for either type of tear. 3D indirect isotropic MR arthrography with FSE sequence and the conventional 2D arthrography are not significantly different in terms of accuracy for diagnosing rotator cuff tears.

  17. Automated computation of femoral angles in dogs from three-dimensional computed tomography reconstructions: Comparison with manual techniques.

    Science.gov (United States)

    Longo, F; Nicetto, T; Banzato, T; Savio, G; Drigo, M; Meneghello, R; Concheri, G; Isola, M

    2018-02-01

    The aim of this ex vivo study was to test a novel three-dimensional (3D) automated computer-aided design (CAD) method (aCAD) for the computation of femoral angles in dogs from 3D reconstructions of computed tomography (CT) images. The repeatability and reproducibility of three manual radiography, manual CT reconstructions and the aCAD method for the measurement of three femoral angles were evaluated: (1) anatomical lateral distal femoral angle (aLDFA); (2) femoral neck angle (FNA); and (3) femoral torsion angle (FTA). Femoral angles of 22 femurs obtained from 16 cadavers were measured by three blinded observers. Measurements were repeated three times by each observer for each diagnostic technique. Femoral angle measurements were analysed using a mixed effects linear model for repeated measures to determine the levels of intra-observer agreement (repeatability) and inter-observer agreement (reproducibility). Repeatability and reproducibility of measurements using the aCAD method were excellent (intra-class coefficients, ICCs≥0.98) for all three angles assessed. Manual radiography and CT exhibited excellent agreement for the aLDFA measurement (ICCs≥0.90). However, FNA repeatability and reproducibility were poor (ICCscomputation of the 3D aCAD method provided the highest repeatability and reproducibility among the tested methodologies. Copyright © 2017 Elsevier Ltd. All rights reserved.

  18. Placental characteristics in monochorionic twins with selective intrauterine growth restriction assessed by gradient angiography and three-dimensional reconstruction.

    Science.gov (United States)

    Gou, Chenyu; Li, Meizhi; Zhang, Xiaoling; Liu, Xiangzhen; Huang, Xuan; Zhou, Yi; Fang, Qun

    2017-11-01

    To investigate the placental characteristics in selective intrauterine growth restriction (sIUGR) using gradient angiography and three-dimensional (3D) reconstruction from computed tomography (CT) scan data. This study included 23 sIUGR cases and 16 monochorionic twin-pregnancies without sIUGR. We injected nonionic iodinated contrast agents into the umbilical arteries and veins. Placental characteristics were analyzed after CT scanning and 3D reconstruction. 73.9% of smaller twins in sIUGR cases had marginal or velamentous cord insertions and less placental sharing. The terminal branch of the arterial tree was scored III-IV in smaller sIUGR twins, while it was scored V-VII in normal monochorionic twins and larger sIUGR twins. Arterio-arterial (A-A) anastomoses presented in all monochorionic placentas. Veno-venous (V-V) anastomoses present in 83.3% (5/6) of Type III sIUGR cases, which was higher than observed in Type I-II cases. The mean diameters of A-A and V-V anastomoses were larger in Type III sIUGR cases. Gradient angiography and 3D placental models displayed different placental angioarchitectures and voluminal placental sharing among three types of sIUGR cases. Placental dysplasia in the smaller twin may cause abnormal cord insertion and unequal placental sharing. The inter-twin anatomoses influence the umbilical cord artery (UA) Doppler and natural pathogenesis of sIUGR.

  19. Three-dimensional virtual reality simulation of periarticular tumors using Dextroscope reconstruction and simulated surgery: a preliminary 10 case study.

    Science.gov (United States)

    Shi, JingSheng; Xia, Jun; Wei, YiBing; Wang, SiQun; Wu, JianGuo; Chen, FeiYan; Huang, GangYong; Chen, Jie

    2014-03-01

    Dextroscope three-dimensional (3D) imaging has been extensively applied for generation of virtual reality (VR) workspaces for in neurosurgery and laparoscopy, though few applications in orthopedic surgery have been reported. Patients undergoing surgery for periarticular tumors (n = 10) from Oct. 2008 to Jun. 2010 were enrolled and presurgically subjected to computed tomography (CT), magnetic resonance imaging (MRI), and MRI angiography (MRI-A). Imaging data was transferred and integrated in Dextroscope, producing a VR simulation. Resultant presurgical 3D anatomical reconstructions and intraoperative anatomical characteristics (virtual vs. actual data) and surgical approach (virtual vs. actual situation) measurement and subjective appearance were compared. Anatomical characteristics in the area of interest and tumor diameters were consistent between virtual and actual data. However, the virtual surgical situations remained inconsistent with the actual intraoperative situation in many cases, leading to complications. The resolution of original CT, MRI, and MRI-A images directly correlated with the quality of 3D simulations, with soft tissues most poorly represented. Tumor tissue imaging quality in 3D varied extensively by tumor type. Anatomical structures of periarticular tumors can be reconstructed using the Dextroscope system with good accuracy in the case of simple fenestration, increasing individualization of treatment, surgical competence level, and potentially reducing intraoperative complications. However, further specialization of VR tools for use in orthopedic applications that involve specialized tools and procedures, such as drilling and implant placement, are urgently required.

  20. Three-Dimensional Printing-based Reconstruction of a Maxillary Bone Defect in a Dog Following Tumor Removal.

    Science.gov (United States)

    Kim, Se Eun; Shim, Kyung Mi; Jang, Kwangsik; Shim, Jin-Hyung; Kang, Seong Soo

    2018-01-01

    Three-dimensional (3D) printing has been applied extensively not only in human, but also veterinary medicine. However, the technique is still used in the clinical area for a surgical plan or education prior to surgery. Thus, we report a case of reconstruction after tumor removal surgery with the use of a 3D-printed scaffold. A 12-year-old female mixed dog had a left caudal maxillary mass. Based on computed tomography images, a defect was confirmed on the maxillary bone due to the oral mass, and a surgical plan was designed to remove the oral mass and graft the 3D printed scaffold. Customized polycaprolactone/ beta-tracalciumphosphate (PCL/β-TCP) scaffold was fabricated using the micro-extrusion-based 3D printer. In the operation, after the removal of the oral mass, the scaffold was grafted onto the defect site. At follow-up, 8 months after surgery, the result was successful without any special problems in the periodic CT scans and oral examinations. This case is believed to be the first case of reconstruction by using a 3D printed scaffold in the maxillary bone defect, and this 3D printing technique is thought to be very helpful for veterinary patients with bone defects and several other diseases. Copyright© 2018, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.

  1. Three-dimensional esophagus reconstruction and monitoring during ablation of atrial fibrillation: combination of two imaging techniques.

    Science.gov (United States)

    Scazzuso, Fernando A; Rivera, Santiago H; Albina, Gastón; de la Paz Ricapito, María; Gómez, Luis Alberto; Sanmartino, Victoria; Kamlofsky, Matías; Laiño, Ruben; Giniger, Alberto

    2013-10-03

    The purpose of the study was to determine the accuracy of a novel three-dimensional (3D) imaging integration technique of the esophagus combining multislice computed tomography (CT) scan of the esophagus into the three-dimensional (3D) electroanatomic map just before pulmonary vein (PV) isolation. We included 94 consecutive patients with symptomatic atrial fibrillation (AF) who underwent ablation. All patients had a CT performed prior procedure that was integrated to the 3D reconstruction electromechanical map of the atrium and the esophagus (Verismo(TM), EnSite® NavX version 7.0 J, St. Jude Medical Inc.). During the procedure, a quadripolar electrophysiology catheter placed in the esophagus was used for mapping and to monitor esophagus position. Integrated (fusion) images were used to determinate the esophagus position compared to the left atrium posterior wall and its relationship with PV ostiums. We compared esophagus position by CT and fusion images. Procedural success was 97.9% with no fatal complications. Esophagus locations were as follows: left 57%, right 7%, oblique course 11% and central 25%. Agreements in esophageal position between CT and fusion imaging techniques were 83.3% and 64% for patients with a recent (≤48 h) and non-recent CT assessment (>48 h), respectively. Throughout the procedure, esophagus stability was 88.8% (lateral displacement<15 mm). Ablative strategy was modified in 51% of the cases due to awareness of esophagus location. Guidance of AF ablation with 3D fusion images was safe and effective. CT images of the esophagus, especially if acquired within 48 h before ablation, ensure appropriate intraprocedural localization of the esophagus. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

  2. Injectable Shape-Memorizing Three-Dimensional Hyaluronic Acid Cryogels for Skin Sculpting and Soft Tissue Reconstruction.

    Science.gov (United States)

    Cheng, Liying; Ji, Kai; Shih, Ting-Yu; Haddad, Anthony; Giatsidis, Giorgio; Mooney, David J; Orgill, Dennis P; Nabzdyk, Christoph S

    2017-03-01

    Hyaluronic acid (HA)-based fillers are used for various cosmetic procedures. However, due to filler migration and degradation, reinjections of the fillers are often required. Methacrylated HA (MA-HA) can be made into injectable shape-memorizing fillers (three-dimensional [3D] MA-HA) aimed to address these issues. In this study, shape retention, firmness, and biocompatibility of 3D MA-HA injected subcutaneously in mice were evaluated. Fifteen mice, each receiving two subcutaneous injections in their back, were divided into four groups receiving HA, MA-HA, 3D MA-HA, or saline, respectively. Digital imaging, scanning electron microscope (SEM) and in vivo imaging system (IVIS), durometry, and histology were utilized to evaluate in vitro/vivo degradation and migration, material firmness, and the angiogenic (CD31) and immunogenic (CD45) response of the host tissue toward the injected materials. Digital imaging, SEM, and IVIS revealed that 3D MA-HA fillers maintained their predetermined shape for at least 30 days in vitro and in vivo. Little volume effects were noted in the saline and other control groups. There were no differences in skin firmness between the groups or over time. Histology showed intact skin architecture in all groups. Three-dimensional MA-HA maintained its macroporous structure with significant angiogenesis at the 3D MA-HA/skin interfaces and throughout the 3D MA-HA. There was no significant inflammatory response to any of the injected materials. 3D MA-HA showed remarkable tissue compatibility, compliance, and shape predictability, as well as retention, and thus might be suitable for various skin sculpting and soft tissue reconstruction purposes.

  3. Injectable Shape-Memorizing Three-Dimensional Hyaluronic Acid Cryogels for Skin Sculpting and Soft Tissue Reconstruction

    Science.gov (United States)

    Cheng, Liying; Ji, Kai; Shih, Ting-Yu; Haddad, Anthony; Giatsidis, Giorgio; Mooney, David J.; Orgill, Dennis P.

    2017-01-01

    Introduction: Hyaluronic acid (HA)-based fillers are used for various cosmetic procedures. However, due to filler migration and degradation, reinjections of the fillers are often required. Methacrylated HA (MA-HA) can be made into injectable shape-memorizing fillers (three-dimensional [3D] MA-HA) aimed to address these issues. In this study, shape retention, firmness, and biocompatibility of 3D MA-HA injected subcutaneously in mice were evaluated. Materials and Methods: Fifteen mice, each receiving two subcutaneous injections in their back, were divided into four groups receiving HA, MA-HA, 3D MA-HA, or saline, respectively. Digital imaging, scanning electron microscope (SEM) and in vivo imaging system (IVIS), durometry, and histology were utilized to evaluate in vitro/vivo degradation and migration, material firmness, and the angiogenic (CD31) and immunogenic (CD45) response of the host tissue toward the injected materials. Results: Digital imaging, SEM, and IVIS revealed that 3D MA-HA fillers maintained their predetermined shape for at least 30 days in vitro and in vivo. Little volume effects were noted in the saline and other control groups. There were no differences in skin firmness between the groups or over time. Histology showed intact skin architecture in all groups. Three-dimensional MA-HA maintained its macroporous structure with significant angiogenesis at the 3D MA-HA/skin interfaces and throughout the 3D MA-HA. There was no significant inflammatory response to any of the injected materials. Conclusion: 3D MA-HA showed remarkable tissue compatibility, compliance, and shape predictability, as well as retention, and thus might be suitable for various skin sculpting and soft tissue reconstruction purposes. PMID:27875939

  4. Effect of Scanning and Reconstruction Parameters on Three Dimensional Volume and CT Value Measurement of Pulmonary Nodules: A Phantom Study

    Directory of Open Access Journals (Sweden)

    Datong SU

    2017-08-01

    value (F=34.79, P<0.001 vs F=156.14, P<0.001. Conclusion An infinitesimally small errors of volumetric measurement of 5 mm or 10 mm nodule could achieved with very low current and ASIR reconstruction, suggesting a possibility of remarkable radiation dose reductions, while it is not applicable for 5 mm nodule. The attenuation acquired through three dimensional software has large measurement error and can not applied in clinical currently.

  5. Accelerated three-dimensional cine phase contrast imaging using randomly undersampled echo planar imaging with compressed sensing reconstruction.

    Science.gov (United States)

    Basha, Tamer A; Akçakaya, Mehmet; Goddu, Beth; Berg, Sophie; Nezafat, Reza

    2015-01-01

    The aim of this study was to implement and evaluate an accelerated three-dimensional (3D) cine phase contrast MRI sequence by combining a randomly sampled 3D k-space acquisition sequence with an echo planar imaging (EPI) readout. An accelerated 3D cine phase contrast MRI sequence was implemented by combining EPI readout with randomly undersampled 3D k-space data suitable for compressed sensing (CS) reconstruction. The undersampled data were then reconstructed using low-dimensional structural self-learning and thresholding (LOST). 3D phase contrast MRI was acquired in 11 healthy adults using an overall acceleration of 7 (EPI factor of 3 and CS rate of 3). For comparison, a single two-dimensional (2D) cine phase contrast scan was also performed with sensitivity encoding (SENSE) rate 2 and approximately at the level of the pulmonary artery bifurcation. The stroke volume and mean velocity in both the ascending and descending aorta were measured and compared between two sequences using Bland-Altman plots. An average scan time of 3 min and 30 s, corresponding to an acceleration rate of 7, was achieved for 3D cine phase contrast scan with one direction flow encoding, voxel size of 2 × 2 × 3 mm(3) , foot-head coverage of 6 cm and temporal resolution of 30 ms. The mean velocity and stroke volume in both the ascending and descending aorta were statistically equivalent between the proposed 3D sequence and the standard 2D cine phase contrast sequence. The combination of EPI with a randomly undersampled 3D k-space sampling sequence using LOST reconstruction allows a seven-fold reduction in scan time of 3D cine phase contrast MRI without compromising blood flow quantification. Copyright © 2014 John Wiley & Sons, Ltd.

  6. Assessment of the effect of three-dimensional mantle density heterogeneity on earth rotation in tidal frequencies.

    Science.gov (United States)

    Liu, Lanbo; Chao, Benjamin F; Sun, Wenke; Kuang, Weijia

    2016-11-01

    In this paper we report the assessment of the effect of the three-dimensional (3D) density heterogeneity in the mantle on Earth Orientation Parameters (EOP) (i.e., the polar motion, or PM, and the length of day, or LOD) in the tidal frequencies. The 3D mantle density model is estimated based upon a global S-wave velocity tomography model (S16U6L8) and the mineralogical knowledge derived from laboratory experiment. The lateral density variation is referenced against the Preliminary Reference Earth Model (PREM). Using this approach the effects of the heterogeneous mantle density variation in all three tidal frequencies (zonal long periods, tesseral diurnal, and sectorial semidiurnal) are estimated in both PM and LOD. When compared with mass or density perturbations originated on the earth's surface such as the oceanic and barometric changes, the heterogeneous mantle only contributes less than 10% of the total variation in PM and LOD in tidal frequencies. Nevertheless, including the 3D variation of the density in the mantle into account explained a substantial portion of the discrepancy between the observed signals in PM and LOD extracted from the lump-sum values based on continuous space geodetic measurement campaigns (e.g., CONT94) and the computed contribution from ocean tides as predicted by tide models derived from satellite altimetry observations (e.g., TOPEX/Poseidon). In other word, the difference of the two, at all tidal frequencies (long-periods, diurnals, and semi-diurnals) contains contributions of the lateral density heterogeneity of the mantle. Study of the effect of mantle density heterogeneity effect on torque-free earth rotation may provide useful constraints to construct the Reference Earth Model (REM), which is the next major objective in global geophysics research beyond PREM.

  7. Three-dimensional reconstruction of the Shigella T3SS transmembrane regions reveals 12-fold symmetry and novel features throughout.

    Science.gov (United States)

    Hodgkinson, Julie L; Horsley, Ashley; Stabat, David; Simon, Martha; Johnson, Steven; da Fonseca, Paula C A; Morris, Edward P; Wall, Joseph S; Lea, Susan M; Blocker, Ariel J

    2009-05-01

    Type III secretion systems (T3SSs) mediate bacterial protein translocation into eukaryotic cells, a process essential for virulence of many Gram-negative pathogens. They are composed of a cytoplasmic secretion machinery and a base that bridges both bacterial membranes, into which a hollow, external needle is embedded. When isolated, the latter two parts are termed the 'needle complex'. An incomplete understanding of the structure of the needle complex has hampered studies of T3SS function. To estimate the stoichiometry of its components, we measured the mass of its subdomains by scanning transmission electron microscopy (STEM). We determined subunit symmetries by analysis of top and side views within negatively stained samples in low-dose transmission electron microscopy (TEM). Application of 12-fold symmetry allowed generation of a 21-25-A resolution, three-dimensional reconstruction of the needle complex base, revealing many new features and permitting tentative docking of the crystal structure of EscJ, an inner membrane component.

  8. Three-dimensional reconstruction of the Shigella T3SS transmembrane regions reveals 12-fold symmetry and novel features throughout

    Energy Technology Data Exchange (ETDEWEB)

    Hodgkinson, J.L.; Wall, J.; Horsley, A.; Stabat, S.; Simon, M.; Johnson, S.; da Fonseca, P. C. A.; Morris, E. P.; Lea, S. M.; Blocker, A. J.

    2009-05-18

    Type III secretion systems (T3SSs) mediate bacterial protein translocation into eukaryotic cells, a process essential for virulence of many Gram-negative pathogens. They are composed of a cytoplasmic secretion machinery and a base that bridges both bacterial membranes, into which a hollow, external needle is embedded. When isolated, the latter two parts are termed the 'needle complex'. An incomplete understanding of the structure of the needle complex has hampered studies of T3SS function. To estimate the stoichiometry of its components, we measured the mass of its subdomains by scanning transmission electron microscopy (STEM). We determined subunit symmetries by analysis of top and side views within negatively stained samples in low-dose transmission electron microscopy (TEM). Application of 12-fold symmetry allowed generation of a 21-25-{angstrom} resolution, three-dimensional reconstruction of the needle complex base, revealing many new features and permitting tentative docking of the crystal structure of EscJ, an inner membrane component.

  9. [Study on the angle and depth of needle insertion at Huantiao (GB 30) by three-dimensional reconstruction].

    Science.gov (United States)

    Liu, Yan-Xiang; Yan, Zhen-Guo; Guo, Yi; Zhuang, Tian-Ge; Shao, Shui-Jin; Jiang, Jun

    2012-10-01

    To observe the anatomic structure of Huantiao (GB 30) visually, to imitate the inserting process of the needle to explore the safty of needle insertion and improve the therapeutic effect of acupuncture in clinic. Combined with anatomic structure of acupoint, muscles and other tissues related with Huantiao (GB 30) were interactively segmented in VOXEL-MAN with the computer graphics technology. Nerves and blood vessels were reconstructed by establishing mathematic model, and the needle-inserting animation of Huantiso (GB 30) was obtained by running script file. The three-dimensional (3-D) visualization of Huantiao (GB 30) on needle-inserting animation was accomplished, the spatial location and expression of Huantiao (GB 30) in the digitized virtual human body were observed, the virtual inserting process was imitated realistically, and the 3-D animation of needle insertion at Huantiao (GB 30) was created. Building mathematic model is favorable for expressing the anatomic structure of Huantiao (GB 30) in 3-D space, imitating the process of needle insertion realistically and observing the spatial structure of the point and the around tissues, which can provide a solid foundation for the safety of needle insertion of acupoints and improve therapeutic effect of acupuncture in clinic.

  10. Postoperative follow-up study of craniosynostosis using three-dimensional surface reconstruction CT (3D-CT)

    Energy Technology Data Exchange (ETDEWEB)

    Nishimoto, Hiroshi; Tsukiyama, Takashi; Nishimura, Jiro; Fujioka, Mutsuhisa; Tsubokawa, Takashi.

    1988-12-01

    In 1983, Michael W. Vannier and Jeffrey L. Marsh developed a computer method that reconstructs three-dimensional images from high-resolution CT-scan series of the facial skeleton. This method has been applied to craniofacial anomalies, basal encephalocele, and other skeletal pathologies. In this study, the postoperative assessment of craniofacial surgical results has been accomplished using 3D-CT techniques in craniosynostosis. The results are as follows: (1) Postoperative 3D-CTs reveal the bony anatomical details corrected by the craniofacial surgery more precisely and more stereographically than do conventional radiological techniques. (2) Secondary changes in the cranium after the surgery, such as reossification at the area of osteotomies or postoperative asymmetric skull deformities, are more early detected by the 3D-CT imaging technique than by a craniogram. (3) In 3D-CT images, internal views of the skull, such mid-sagittal, rear internal, or top axial views of the intracranial skull base, are most useful in postoperative assessments of the surgical results and of postoperative secondary changes in the cranium. Based on our experience, we expect that 3D-CT imaging techniques will become more important in the management of craniosynostosis.

  11. Postoperative follow-up study of craniosynostosis using three-dimensional surface reconstruction CT (3D-CT)

    International Nuclear Information System (INIS)

    Nishimoto, Hiroshi; Tsukiyama, Takashi; Nishimura, Jiro; Fujioka, Mutsuhisa; Tsubokawa, Takashi.

    1988-01-01

    In 1983, Michael W. Vannier and Jeffrey L. Marsh developed a computer method that reconstructs three-dimensional images from high-resolution CT-scan series of the facial skeleton. This method has been applied to craniofacial anomalies, basal encephalocele, and other skeletal pathologies. In this study, the postoperative assessment of craniofacial surgical results has been accomplished using 3D-CT techniques in craniosynostosis. The results are as follows: 1) Postoperative 3D-CTs reveal the bony anatomical details corrected by the craniofacial surgery more precisely and more stereographically than do conventional radiological techniques. 2) Secondary changes in the cranium after the surgery, such as reossification at the area of osteotomies or postoperative asymmetric skull deformities, are more early detected by the 3D-CT imaging technique than by a craniogram. 3) In 3D-CT images, internal views of the skull, such mid-sagittal, rear internal, or top axial views of the intracranial skull base, are most useful in postoperative assessments of the surgical results and of postoperative secondary changes in the cranium. Based on our experience, we expect that 3D-CT imaging techniques will become more important in the management of craniosynostosis. (author)

  12. Assessment of murine colorectal cancer by micro-ultrasound using three dimensional reconstruction and non-linear contrast imaging

    Directory of Open Access Journals (Sweden)

    Jessica L Freeling

    2016-01-01

    Full Text Available The relatively low success rates of current colorectal cancer (CRC therapies have led investigators to search for more specific treatments. Vertebrate models of colorectal cancer are essential tools for the verification of new therapeutic avenues such as gene therapy. The evaluation of colorectal cancer in mouse models has been limited due to the lack of an accurate quantitative and longitudinal noninvasive method. This work introduces a method of three-dimensional micro-ultrasound reconstruction and microbubble administration for the comprehensive and longitudinal evaluation of CRC progression. This approach enabled quantification of both tumor volume and relative vascularity using a well-established inducible murine model of colon carcinogenesis. This inducible model recapitulated the adenocarcinoma sequence that occurs in human CRC allowing systematic in situ evaluation of the ultrasound technique. The administration of intravenous microbubbles facilitated enhancement of colon vascular contrast and quantification of relative vascularity of the mid and distal colon of the mouse in three dimensions. In addition, two-dimensional imaging in the sagittal orientation of the colon using Non-Linear Contrast Mode enabled calculation of relative blood volume and perfusion as the microbubbles entered the colon microvasculature. Quantitative results provided by the outlined protocol represent a noninvasive tool that can more accurately define CRC development and progression. This ultrasound technique will allow the practical and economical longitudinal study of murine CRC in both basic and preclinical studies.

  13. Three-dimensional reconstruction of highly complex microscopic samples using scanning electron microscopy and optical flow estimation.

    Directory of Open Access Journals (Sweden)

    Ahmadreza Baghaie

    Full Text Available Scanning Electron Microscope (SEM as one of the major research and industrial equipment for imaging of micro-scale samples and surfaces has gained extensive attention from its emerge. However, the acquired micrographs still remain two-dimensional (2D. In the current work a novel and highly accurate approach is proposed to recover the hidden third-dimension by use of multi-view image acquisition of the microscopic samples combined with pre/post-processing steps including sparse feature-based stereo rectification, nonlocal-based optical flow estimation for dense matching and finally depth estimation. Employing the proposed approach, three-dimensional (3D reconstructions of highly complex microscopic samples were achieved to facilitate the interpretation of topology and geometry of surface/shape attributes of the samples. As a byproduct of the proposed approach, high-definition 3D printed models of the samples can be generated as a tangible means of physical understanding. Extensive comparisons with the state-of-the-art reveal the strength and superiority of the proposed method in uncovering the details of the highly complex microscopic samples.

  14. Measurement and comparison of tibial posterior slope angle in different methods based on three-dimensional reconstruction.

    Science.gov (United States)

    Zhang, Yang; Wang, Jian; Xiao, Jun; Zhao, Liang; Li, Zhi-Han; Yan, Ge; Shi, Zhan-Jun

    2014-06-01

    The tibial posterior slope (PTS) is an important parameter for sagittal alignment which is associated with postoperative range of motion. However, the variations of different population subsets and different referential axes are still uncertain. In this study, 80 healthy people from South China were recruited and measured on three-dimensional reconstruction of CT, with application of three referential axes, the proximal tibial long axis, the anterior and posterior cortices. The averages and standard deviations of medial PTS (MPTS) in the three methods were 8.43±3.06, 11.45±2.82 and 6.31±3.24, separately. The results of lateral PTS (LPTS) were 7.56±2.51, 10.17±2.42 and 5.22±2.59. There was no significant difference between the male and the female, and the two sides of one body. The results of the three axes varied but correlated with each other significantly. Through comparison it was found that, MPTS/LPTS of people from South China were different from the published data of other countries. Although PTS change markedly according to the reference axis, they show significant correlations with each other, and may be used safely. There are differences associated with races, but not gender nor the two sides of the body. The results of the study provided references for the reconstruction of the knee PTS, if the differences of reference axes, races and genders were considered. Copyright © 2014 Elsevier B.V. All rights reserved.

  15. Correlation between cuspal inclination and tooth cracked syndrome: a three-dimensional reconstruction measurement and finite element analysis.

    Science.gov (United States)

    Qian, Yunzhu; Zhou, Xuefeng; Yang, Jianxin

    2013-06-01

    This paper explored the correlation between cuspal inclination and tooth cracked syndrome by measuring and reconstructing the cuspal inclinations of cracked maxillary first molars through three-dimensional (3D) finite element analysis (FEA). The cuspal inclinations of 11 maxillary left first molars with cracked tooth syndrome and 22 intact controls were measured by 3D reconstruction. The mean values of each group were used to construct two 3D finite element models of maxillary first molar for comparing stress distribution under the loads of 200N at 0°, 45°, and 90°, respectively, to the tooth axis. There was statistically significant difference in the cuspal inclination between the incompletely fractured group and the intact control group ( P  < 0.001), which was 5.5-6.7 degrees steeper. The model from the mean cuspal inclinations of the incompletely fractured molars showed the maximum tensile stress of 5.83, 10.87, and 25.32 MPa, respectively, in comparison with 5.40, 8.49, and 22.76 MPa for the model of the control group. Besides, the tensile stress was mainly at the center groove and cervical region of the molar model. Steeper cuspal inclinations resulted in an increment in tensile stress that was mainly at the center groove and cervical region of the molar model under equivalent loads. Higher unfavorable tensile stress was generated with the increasing horizontal component load on the cuspal incline. This indicates an effective reduction of cuspal inclination to the compromised teeth for dentists. © 2012 John Wiley & Sons A/S.

  16. Toward computerized morphometric facilities: a review of 58 software packages for computer-aided three-dimensional reconstruction, quantification, and picture generation from parallel serial sections

    NARCIS (Netherlands)

    Huijsmans, D. P.; Lamers, W. H.; Los, J. A.; Strackee, J.

    1986-01-01

    This review gives an inventory of 58 computer-aided three-dimensional reconstruction applications in the domain of biomedical research. It is devoted to the formulation of a set of recommendations thought to be necessary for improved performance of software packages in this field. These

  17. Pre-operative CT angiography and three-dimensional image post processing for deep inferior epigastric perforator flap breast reconstructive surgery

    OpenAIRE

    Lam, D L; Mitsumori, L M; Neligan, P C; Warren, B H; Shuman, W P; Dubinsky, T J

    2012-01-01

    Autologous breast reconstructive surgery with deep inferior epigastric artery (DIEA) perforator flaps has become the mainstay for breast reconstructive surgery. CT angiography and three-dimensional image post processing can depict the number, size, course and location of the DIEA perforating arteries for the pre-operative selection of the best artery to use for the tissue flap. Knowledge of the location and selection of the optimal perforating artery shortens operative times and decreases pat...

  18. RECONSTRUCTING THE SUBSURFACE THREE-DIMENSIONAL MAGNETIC STRUCTURE OF A SOLAR ACTIVE REGION USING SDO/HMI OBSERVATIONS

    International Nuclear Information System (INIS)

    Chintzoglou, Georgios; Zhang Jie

    2013-01-01

    A solar active region (AR) is a three-dimensional (3D) magnetic structure formed in the convection zone, whose property is fundamentally important for determining the coronal structure and solar activity when emerged. However, our knowledge of the detailed 3D structure prior to its emergence is rather poor, largely limited by the low cadence and sensitivity of previous instruments. Here, using the 45 s high-cadence observations from the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory, we are able for the first time to reconstruct a 3D data cube and infer the detailed subsurface magnetic structure of NOAA AR 11158, and to characterize its magnetic connectivity and topology. This task is accomplished with the aid of the image-stacking method and advanced 3D visualization. We find that the AR consists of two major bipoles or four major polarities. Each polarity in 3D shows interesting tree-like structure, i.e., while the root of the polarity appears as a single tree-trunk-like tube, the top of the polarity has multiple branches consisting of smaller and thinner flux tubes which connect to the branches of the opposite polarity that is similarly fragmented. The roots of the four polarities align well along a straight line, while the top branches are slightly non-coplanar. Our observations suggest that an active region, even appearing highly complicated on the surface, may originate from a simple straight flux tube that undergoes both horizontal and vertical bifurcation processes during its rise through the convection zone.

  19. A homologous mapping method for three-dimensional reconstruction of protein networks reveals disease-associated mutations.

    Science.gov (United States)

    Huang, Sing-Han; Lo, Yu-Shu; Luo, Yong-Chun; Tseng, Yu-Yao; Yang, Jinn-Moon

    2018-03-19

    One of the crucial steps toward understanding the associations among molecular interactions, pathways, and diseases in a cell is to investigate detailed atomic protein-protein interactions (PPIs) in the structural interactome. Despite the availability of large-scale methods for analyzing PPI networks, these methods often focused on PPI networks using genome-scale data and/or known experimental PPIs. However, these methods are unable to provide structurally resolved interaction residues and their conservations in PPI networks. Here, we reconstructed a human three-dimensional (3D) structural PPI network (hDiSNet) with the detailed atomic binding models and disease-associated mutations by enhancing our PPI families and 3D-domain interologs from 60,618 structural complexes and complete genome database with 6,352,363 protein sequences across 2274 species. hDiSNet is a scale-free network (γ = 2.05), which consists of 5177 proteins and 19,239 PPIs with 5843 mutations. These 19,239 structurally resolved PPIs not only expanded the number of PPIs compared to present structural PPI network, but also achieved higher agreement with gene ontology similarities and higher co-expression correlation than the ones of 181,868 experimental PPIs recorded in public databases. Among 5843 mutations, 1653 and 790 mutations involved in interacting domains and contacting residues, respectively, are highly related to diseases. Our hDiSNet can provide detailed atomic interactions of human disease and their associated proteins with mutations. Our results show that the disease-related mutations are often located at the contacting residues forming the hydrogen bonds or conserved in the PPI family. In addition, hDiSNet provides the insights of the FGFR (EGFR)-MAPK pathway for interpreting the mechanisms of breast cancer and ErbB signaling pathway in brain cancer. Our results demonstrate that hDiSNet can explore structural-based interactions insights for understanding the mechanisms of disease

  20. Anatomically Inspired Three-dimensional Micro-tissue Engineered Neural Networks for Nervous System Reconstruction, Modulation, and Modeling.

    Science.gov (United States)

    Struzyna, Laura A; Adewole, Dayo O; Gordián-Vélez, Wisberty J; Grovola, Michael R; Burrell, Justin C; Katiyar, Kritika S; Petrov, Dmitriy; Harris, James P; Cullen, D Kacy

    2017-05-31

    Functional recovery rarely occurs following injury or disease-induced degeneration within the central nervous system (CNS) due to the inhibitory environment and the limited capacity for neurogenesis. We are developing a strategy to simultaneously address neuronal and axonal pathway loss within the damaged CNS. This manuscript presents the fabrication protocol for micro-tissue engineered neural networks (micro-TENNs), implantable constructs consisting of neurons and aligned axonal tracts spanning the extracellular matrix (ECM) lumen of a preformed hydrogel cylinder hundreds of microns in diameter that may extend centimeters in length. Neuronal aggregates are delimited to the extremes of the three-dimensional encasement and are spanned by axonal projections. Micro-TENNs are uniquely poised as a strategy for CNS reconstruction, emulating aspects of brain connectome cytoarchitecture and potentially providing means for network replacement. The neuronal aggregates may synapse with host tissue to form new functional relays to restore and/or modulate missing or damaged circuitry. These constructs may also act as pro-regenerative "living scaffolds" capable of exploiting developmental mechanisms for cell migration and axonal pathfinding, providing synergistic structural and soluble cues based on the state of regeneration. Micro-TENNs are fabricated by pouring liquid hydrogel into a cylindrical mold containing a longitudinally centered needle. Once the hydrogel has gelled, the needle is removed, leaving a hollow micro-column. An ECM solution is added to the lumen to provide an environment suitable for neuronal adhesion and axonal outgrowth. Dissociated neurons are mechanically aggregated for precise seeding within one or both ends of the micro-column. This methodology reliably produces self-contained miniature constructs with long-projecting axonal tracts that may recapitulate features of brain neuroanatomy. Synaptic immunolabeling and genetically encoded calcium

  1. A comparative study between data obtained from conventional lateral cephalometry and reconstructed three-dimensional computed tomography images.

    Science.gov (United States)

    Oh, Suseok; Kim, Ci-Young; Hong, Jongrak

    2014-06-01

    The aim of this study was to verify the concordance of the measurement values when the same cephalometric analysis method was used for two-dimensional (2D) cephalometric radiography and three-dimensional computed tomography (3D CT), and to identify which 3D Frankfort horizontal (FH) plane was the most concordant with FH plane used for cephalometric radiography. Reference horizontal plane was FH plane. Palatal angle and occlusal plane angle was evaluated with FH plane. Gonial angle (GA), palatal angle, upper occlusal plane angle (UOPA), mandibular plane angle (MPA), U1 to occlusal plane angle, U1 to FH plane angle, SNA and SNB were obtained on 2D cephalmetries and reconstructed 3D CT. The values measured eight angles in 2D lateral cephalometry and reconstructed 3D CT were evaluated by intraclass correlation coefficiency (ICC). It also was evaluated to identify 3D FH plane with high degree of concordance to 2D one by studying which one in four FH planes shows the highest degree of concordance with 2D FH plane. ICCs of MPA (0.752), UOPA (0.745), SNA (0.798) and SNB (0.869) were high. On the other hand, ICCs of gonial angle (0.583), palatal angle (0.287), U1 to occlusal plane (0.404), U1 to FH plane (0.617) were low respectively. Additionally GA and MPA acquired from 2D were bigger than those on 3D in all 20 patients included in this study. Concordance between one UOPA from 2D and four UOPAs from 3D CT were evaluated by ICC values. Results showed no significant difference among four FH planes defined on 3D CT. FH plane that can be set on 3D CT does not have difference in concordance from FH plane on lateral cephalometry. However, it is desirable to define FH plane on 3D CT with two orbitales and one porion considering the reproduction of orbitale itself.

  2. Mental Rotation with Tangible Three-Dimensional Objects: A New Measure Sensitive to Developmental Differences in 4- to 8-year-old Children

    Science.gov (United States)

    Hawes, Zachary; LeFevre, Jo-Anne; Xu, Chang; Bruce, Catherine D.

    2015-01-01

    There is an emerging consensus that spatial thinking is fundamental to later success in math and science. The goals of this study were to design and evaluate a novel test of three-dimensional (3D) mental rotation for 4- to 8-year-old children (N?=?165) that uses tangible 3D objects. Results revealed that the measure was both valid and reliable and…

  3. Three dimensional moire pattern alignment

    Science.gov (United States)

    Juday, Richard D. (Inventor)

    1991-01-01

    An apparatus is disclosed for determining three dimensional positioning relative to a predetermined point utilizing moire interference patterns such that the patterns are complementary when viewed on axis from the predetermined distance. Further, the invention includes means for determining rotational positioning in addition to three dimensional translational positioning.

  4. Three-dimensional reconstructions in spine and screw trajectory simulation on 3D digital images: a step by step approach by using Mimics software.

    Science.gov (United States)

    Chen, Dong; Chen, Chun-Hui; Tang, Li; Wang, Kai; Li, Yu-Zhe; Phan, Kevin; Wu, Ai-Min

    2017-12-01

    There is a rapidly increasing amount of literature outlining the use of three-dimensional (3D) reconstruction and printing technologies in recent years. However, precise instructive articles which describe step-by-step methods of reconstructing 3D images from computed tomography (CT) or magnetic resonance imaging (MRI) remain limited. To address these issues, this article describes a detailed protocol which will allow the reader to easily perform the 3D reconstruction in their future research, to allow investigation of the appropriate surgical anatomy and allow innovative designs of novel screw fixation techniques or pre-operative surgical planning.

  5. The dental cavities of equine cheek teeth: three-dimensional reconstructions based on high resolution micro-computed tomography

    Directory of Open Access Journals (Sweden)

    Kopke Susan

    2012-09-01

    Full Text Available Abstract Background Recent studies reported on the very complex morphology of the pulp system in equine cheek teeth. The continuous production of secondary dentine leads to distinct age-related changes of the endodontic cavity. Detailed anatomical knowledge of the dental cavities in all ages is required to explain the aetiopathology of typical equine endodontic diseases. Furthermore, data on mandibular and maxillary pulp systems is in high demand to provide a basis for the development of endodontic therapies. However, until now examination of the pulp cavity has been based on either sectioned teeth or clinical computed tomography. More precise results were expected by using micro-computed tomography with a resolution of about 0.1 mm and three-dimensional reconstructions based on previous greyscale analyses and histological verification. The aim of the present study was to describe the physiological configurations of the pulp system within a wide spectrum of tooth ages. Results Maxillary teeth: All morphological constituents of the endodontic cavity were present in teeth between 4 and 16 years: Triadan 06s displayed six pulp horns and five root canals, Triadan 07-10s five pulp horns and four root canals and Triadan 11s seven pulp horns and four to six root canals. A common pulp chamber was most frequent in teeth ≤5 years, but was found even in a tooth of 9 years. A large variety of pulp configurations was observed within 2.5 and 16 years post eruption, but most commonly a separation into mesial and distal pulp compartments was seen. Maxillary cheek teeth showed up to four separate pulp compartments but the frequency of two, three and four pulp compartments was not related to tooth age (P > 0.05. In Triadan 06s, pulp horn 6 was always connected to pulp horns 1 and 3 and root canal I. In Triadan 11s, pulp horns 7 and 8 were present in variable constitutions. Mandibular teeth: A common pulp chamber was present in teeth up to 15 years, but most

  6. Flow prediction in cerebral aneurysms based on geometry reconstruction from 3D rotational angiography

    NARCIS (Netherlands)

    Mikhal, Julia Olegivna; Kroon, Dirk-Jan; Slump, Cornelis H.; Geurts, Bernardus J.

    We present an immersed boundary (IB) method for the simulation of steady blood flow inside a realistic cerebral aneurysm. We reconstruct a segment of the cerebrovascular system that contains an aneurysm, by using medical images obtained with three dimensional rotational angiography (3DRA). The main

  7. Three-dimensional heart dose reconstruction to estimate normal tissue complication probability after breast irradiation using portal dosimetry

    NARCIS (Netherlands)

    Louwe, R. J. W.; Wendling, M.; van Herk, M. B.; Mijnheer, B. J.

    2007-01-01

    Irradiation of the heart is one of the major concerns during radiotherapy of breast cancer. Three-dimensional (3D) treatment planning would therefore be useful but cannot always be performed for left-sided breast treatments, because CT data may not be available. However, even if 3D dose calculations

  8. Three-dimensional heart dose reconstruction to estimate normal tissue complication probability after breast irradiation using portal dosimetry.

    NARCIS (Netherlands)

    Louwe, R.J.W.; Wendling, M.; Herk, M.B. van; Mijnheer, B.J.

    2007-01-01

    Irradiation of the heart is one of the major concerns during radiotherapy of breast cancer. Three-dimensional (3D) treatment planning would therefore be useful but cannot always be performed for left-sided breast treatments, because CT data may not be available. However, even if 3D dose calculations

  9. Three-dimensional (3-D) model utilization for fracture reconstruction in oral and maxillofacial surgery: A case report

    Science.gov (United States)

    Damayanti, Ista; Lilies, Latief, Benny S.

    2017-02-01

    Three-dimensional (3-D) printing has been identified as an innovative manufacturing technology of functional parts. The 3-D model was produced based on CT-Scan using Osyrix software, where automatic segmentation was performed and convert into STL format. This STL format was then ready to be produced physically, layer-by-layer to create 3-D model.

  10. Three-dimensional reconstruction and measurements of zebrafish larvae from high-throughput axial-viewin vivoimaging.

    Science.gov (United States)

    Guo, Yuanhao; Veneman, Wouter J; Spaink, Herman P; Verbeek, Fons J

    2017-05-01

    High-throughput imaging is applied to provide observations for accurate statements on phenomena in biology and this has been successfully applied in the domain of cells, i.e. cytomics. In the domain of whole organisms, we need to take the hurdles to ensure that the imaging can be accomplished with a sufficient throughput and reproducibility. For vertebrate biology, zebrafish is a popular model system for High-throughput applications. The development of the Vertebrate Automated Screening Technology (VAST BioImager), a microscope mounted system, enables the application of zebrafish high-throughput screening. The VAST BioImager contains a capillary that holds a zebrafish for imaging. Through the rotation of the capillary, multiple axial-views of a specimen can be acquired. For the VAST BioImager, fluorescence and/or confocal microscopes are used. Quantitation of a specific signal as derived from a label in one fluorescent channel requires insight in the zebrafish volume to be able to normalize quantitation to volume units. However, from the setup of the VAST BioImager, a specimen volume cannot be straightforwardly derived. We present a high-throughput axial-view imaging architecture based on the VAST BioImager. We propose profile-based 3D reconstruction to produce 3D volumetric representations for zebrafish larvae using the axial-views. Volume and surface area can then be derived from the 3D reconstruction to obtain the shape characteristics in high-throughput measurements. In addition, we develop a calibration and a validation of our methodology. From our measurements we show that with a limited amount of views, accurate measurements of volume and surface area for zebrafish larvae can be obtained. We have applied the proposed method on a range of developmental stages in zebrafish and produced metrical references for the volume and surface area for each stage.

  11. Do three-dimensional reconstructions add to the diagnostic value of computed tomography in the field of traumatology?

    International Nuclear Information System (INIS)

    Billet, F.P.J.; Schmitt, W.G.H.; Hofmann, M.; Huber, M.; Gay, B.

    1990-01-01

    Very little time was needed for three-dimensional techniques to show that they are of great importance to the accurracy and, above all, interpretation of CT-based diagnostic findings in the skeleton. This method is not associated with any increased risks from radiation and if there is no absolute requirement for a 'second plane' to be displayed, as for instance in fractures of the calcaneus, radiation exposure can be reduced even further. Particular mention should here also be made of the sternoclavicular joint, coracoid process and intervertebral foramina, even more so as we feel that the diagnostic advantages offered by three-dimensional techniques in traumatology have so far not been described in sufficient detail. (orig./GDG) [de

  12. Three-dimensional virtual reconstruction as a tool for preoperative planning in the management of complex anorectal fistulas

    Directory of Open Access Journals (Sweden)

    Edilson Carvalho Sousa Júnior

    2018-01-01

    Full Text Available The making of three-dimensional virtual models is a promising technology in preoperative planning, but that is not used in the treatment of anorectal fistulas. The objective of this work is to describe the development and initial experience of the construction of a virtual three-dimensional model of the pelvic anatomy of a patient, allowing the exact identification of the relationships between the fistulous tracts of complex anorectal fistulas and the other pelvic structures. An MRI was performed on this patient, and the images were exported to the Vitrea fX Workstation® software. A radiologist did the analysis and segmentation of the images that were then sent to a three-dimensional image processor (Meshlab v. 1.3.3 – ISTI – CNR Research Center, Pisa University, Italy. The final 3D color image was analyzed by the surgeon and used to guide the catheterization of the fistulous pathways, the internal orifice and to assist in the identification of adjacent structures. The final three-dimensional model presented a high correlation with the intraoperative findings and facilitated the surgical planning. Resumo: A criação de modelos virtuais tridimensionais é uma tecnologia promissora no planejamento pré-operatorio, entretanto não é utilizada no tratamento de fistulas anais. O objetivo desse trabalho é descrever o desenvolvimento e a experiência inicial da construção de um modelo virtual tridimensional da anatomia pélvica de um paciente, que permite a identificação exata das relações entre os tratos fistulosos de fistulas anais complexas e as demais estruturas pélvicas. O paciente realizou uma ressonância magnética e as imagens foram exportadas para o programa Vitrea fX software Workstation®. Um radiologista realizou a analise e segmentação das imagens que, em seguida, foram enviadas para um processador de imagens tridimensionais (Meshlab v. 1.3.3 – ISTI – CNR research center, Pisa University, Italy®. A imagem 3D colorida

  13. Rotational and Translational Components of Motion Parallax: Observers' Sensitivity and Implications for Three-Dimensional Computer Graphics

    Science.gov (United States)

    Kaiser, Mary K.; Montegut, Michael J.; Proffitt, Dennis R.

    1995-01-01

    The motion of objects during motion parallax can be decomposed into 2 observer-relative components: translation and rotation. The depth ratio of objects in the visual field is specified by the inverse ratio of their angular displacement (from translation) or equivalently by the inverse ratio of their rotations. Despite the equal mathematical status of these 2 information sources, it was predicted that observers would be far more sensitive to the translational than rotational component. Such a differential sensitivity is implicitly assumed by the computer graphics technique billboarding, in which 3-dimensional (3-D) objects are drawn as planar forms (i.e., billboards) maintained normal to the line of sight. In 3 experiments, observers were found to be consistently less sensitive to rotational anomalies. The implications of these findings for kinetic depth effect displays and billboarding techniques are discussed.

  14. Development of a three-dimensional computer code for reconstructing power distributions by means of side reflector instrumentation and determination of the capabilities and limitations of this method

    International Nuclear Information System (INIS)

    Knob, P.J.

    1982-07-01

    This work is concerned with the detection of flux disturbances in pebble bed high temperature reactors by means of flux measurements in the side reflector. Included among the disturbances studied are xenon oscillations, rod group insertions, and individual rod insertions. Using the three-dimensional diffusion code CITATION, core calculations for both a very small reactor (KAHTER) and a large reactor (PNP-3000) were carried out to determine the neutron fluxes at the detector positions. These flux values were then used in flux mapping codes for reconstructing the flux distribution in the core. As an extension of the already existing two-dimensional MOFA code, which maps azimuthal disturbances, a new three-dimensional flux mapping code ZELT was developed for handling axial disturbances as well. It was found that both flux mapping programs give satisfactory results for small and large pebble bed reactors alike. (orig.) [de

  15. Improvement of the Method for Reconstructing the Temperature and Salinity Three-Dimensional Fields of the Black Sea Based on Insufficient Measurements and Altimetry

    Directory of Open Access Journals (Sweden)

    V.V. Knysh

    2016-12-01

    Full Text Available The article represents the results of two special numerical experiments aimed at improving the previously proposed procedure of reconstructing salinity and temperature three-dimensional fields based on the altimetry data and the insufficient measurements performed at the stations and the Argo buoys in 2012. In the Experiment 1, the monthly average coefficients of sea level linear dependence and depths where the salinity values of the “zero” gradation altimetry level profile lie within the salinity profiles of positive and negative gradations are applied. The procedure for calculating the daily average coefficients of the depth linear trends is realized in the Experiment 2. It is shown that the thermohaline fields reconstructed in the Experiment 2 for the deepwater area are more accurate; on the horizons of the 100–500 m layer their values range smoothly from one day to another. The Black Sea hydrophysical fields are reconstructed by assimilation in the model of three-dimensional thermohaline parameters in the reanalysis for 2012. It is revealed that, as compared to the observations on the overwhelming majority of horizons in the 0–500 m layer (the Experiment 2, the standard root-mean-square deviations of temperature and salinity are lower than those in Experiment 1. The root of the measured salinity field dispersion exceeds the standard deviations on all the horizons within 0–500 m, inclusive. Application of the daily average coefficients of the linear trends for reconstructing three-dimensional fields of temperature and salinity, and their subsequent assimilation in the model is preferable. It is revealed that the model of the upper 0–100 m layer thermodynamics requires improvement.

  16. The Solution of a Coupled Nonlinear System Arising in a Three-Dimensional Rotating Flow Using Spline Method

    Directory of Open Access Journals (Sweden)

    Jigisha U. Pandya

    2012-01-01

    Full Text Available The behavior of the non-linear-coupled systems arising in axially symmetric hydromagnetics flow between two horizontal plates in a rotating system is analyzed, where the lower is a stretching sheet and upper is a porous solid plate. The equations of conservation of mass and momentum are transformed to a system of coupled nonlinear ordinary differential equations. These equations for the velocity field are solved numerically by using quintic spline collocation method. To solve the nonlinear equation, quasilinearization technique has been used. The numerical results are presented through graphs, in which the effects of viscosity, through flow, magnetic flux, and rotational velocity on velocity field are discussed.

  17. Three-dimensional reconstruction of an in-situ Miocene peat forest from the lower Rhine Embayment, northwestern Germany - new methods in palaeovegetation analysis

    Energy Technology Data Exchange (ETDEWEB)

    Mosbrugger, V.; Gee, C.T.; Belz, G.; Ashraf, A.R. (University of Tubingen, Tubingen (Germany). Inst. of Geology and Palaeontology)

    1994-08-01

    New techniques have been developed for the analysis of stump horizons that result in a relatively detailed three-dimensional reconstruction of ancient forests. In addition, a rough estimate of their above-ground standing biomass can be calculated. These techniques are applied to an in-situ Miocene peat forest preserved in the Lower Rhine Embayment, northwestern Germany. In a study area of 2500 m[sup 2], 476 stumps were mapped and used in the forest reconstruction. Additionally, pollen samples and leaf remains have been analysed. The peat forest consists primarily of conifers (in particular Taxodiaceae and Pinaceae) with Sciadopitys being the most common genus. The only angiosperms in the wood flora were palms, but in the pollen flora, evidence for the Myricaceae, Mastixiaceae, Ericaceae and a few other angiosperms is also present. The forest was relatively dense with 1904 trees/ha and a basal area of 164 m[sup 2]. Mean trunk diameter was 28 cm, while mean tree height is calculated to have been 9.9 m. Estimated above ground biomass is 750 t/ha, but this value also includes dead or partly dead trees. This peat forest does not closely compare with previous reconstructions of Miocene peat forests. Its three dimensional structure and biomass differ from those of modern bald cypress swamps.

  18. On the Combination of Differential Emission Measure Analysis and Rotational Tomography for Three-dimensional Solar EUV Imaging

    Science.gov (United States)

    Frazin, R. A.; Kamalabadi, F.; Weber, M. A.

    2005-08-01

    Conventional differential emission measure (DEM) analysis allows one to determine the amount of plasma as a function of temperature along a given line of sight. A completely different technique called solar rotational tomography (SRT) exploits the view angles provided by solar rotation to determine the spatial distribution of emissivity in three dimensions. These two techniques can be combined in a procedure called differential emission measure tomography (DEMT) to determine the DEM at each point in the corona with the same spatial resolution as can normally be achieved by SRT. In this paper the theory of DEMT is presented, and numerical examples based on the Atmospheric Imaging Assembly (AIA) are given. The results demonstrate promising potential for the methods to be adapted for use with other EUV and X-ray imaging and/or spectroscopy instruments.

  19. Three dimensional surface analyses of pubic symphyseal faces of contemporary Japanese reconstructed with 3D digitized scanner.

    Science.gov (United States)

    Biwasaka, Hitoshi; Sato, Kei; Aoki, Yasuhiro; Kato, Hideaki; Maeno, Yoshitaka; Tanijiri, Toyohisa; Fujita, Sachiko; Dewa, Koji

    2013-09-01

    Three dimensional pubic bone images were analyzed to quantify some age-dependent morphological changes of the symphyseal faces of contemporary Japanese residents. The images were synthesized from 145 bone specimens with 3D measuring device. Phases of Suchey-Brooks system were determined on the 3D pubic symphyseal images without discrepancy from those carried out on the real bones because of the high fidelity. Subsequently, mean curvatures of the pubic symphyseal faces to examine concavo-convex condition of the surfaces were analyzed on the 3D images. Average values of absolute mean curvatures of phase 1 and 2 groups were higher than those of phase 3-6 ones, whereas the values were approximately constant over phase 3 presumably reflecting the inactivation of pubic faces over phase 3. Ratio of the concave areas increased gradually with progressing phase or age classes, although convex areas were predominant in every phase. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

  20. A New Approach for the Solution of Three-Dimensional Magnetohydrodynamic Rotating Flow over a Shrinking Sheet

    Directory of Open Access Journals (Sweden)

    S. S. Motsa

    2010-01-01

    Full Text Available The numerical solution of magnetohydrodynamic (MHD and rotating flow over a porous shrinking sheet is obtained by the new approach known as spectral homotopy analysis method (SHAM. Using a similarity transformation, the governing equations for the momentum are reduced to a set of ordinary differential equations and are solved by the SHAM approach to determine velocity distributions and shear stress variations for different governing parameters. The SHAM results are analysed and validated against numerical results obtained using MATLAB's built-in bvp4c routine, and good agreement is observed.

  1. Dynamic concision for three-dimensional reconstruction of human organ built with virtual reality modelling language (VRML)*

    Science.gov (United States)

    Yu, Zheng-yang; Zheng, Shu-sen; Chen, Lei-ting; He, Xiao-qian; Wang, Jian-jun

    2005-01-01

    This research studies the process of 3D reconstruction and dynamic concision based on 2D medical digital images using virtual reality modelling language (VRML) and JavaScript language, with a focus on how to realize the dynamic concision of 3D medical model with script node and sensor node in VRML. The 3D reconstruction and concision of body internal organs can be built with such high quality that they are better than those obtained from the traditional methods. With the function of dynamic concision, the VRML browser can offer better windows for man-computer interaction in real-time environment than ever before. 3D reconstruction and dynamic concision with VRML can be used to meet the requirement for the medical observation of 3D reconstruction and have a promising prospect in the fields of medical imaging. PMID:15973760

  2. Dynamic concision for three-dimensional reconstruction of human organ built with virtual reality modelling language (VRML).

    Science.gov (United States)

    Yu, Zheng-yang; Zheng, Shu-sen; Chen, Lei-ting; He, Xiao-qian; Wang, Jian-jun

    2005-07-01

    This research studies the process of 3D reconstruction and dynamic concision based on 2D medical digital images using virtual reality modelling language (VRML) and JavaScript language, with a focus on how to realize the dynamic concision of 3D medical model with script node and sensor node in VRML. The 3D reconstruction and concision of body internal organs can be built with such high quality that they are better than those obtained from the traditional methods. With the function of dynamic concision, the VRML browser can offer better windows for man-computer interaction in real-time environment than ever before. 3D reconstruction and dynamic concision with VRML can be used to meet the requirement for the medical observation of 3D reconstruction and have a promising prospect in the fields of medical imaging.

  3. Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain

    Energy Technology Data Exchange (ETDEWEB)

    Parent, Kristin N., E-mail: kparent@msu.edu [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); Tang, Jinghua; Cardone, Giovanni [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); Gilcrease, Eddie B. [University of Utah School of Medicine, Division of Microbiology and Immunology, Department of Pathology, Salt Lake City, UT 84112 (United States); Janssen, Mandy E.; Olson, Norman H. [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); Casjens, Sherwood R., E-mail: sherwood.casjens@path.utah.edu [University of Utah School of Medicine, Division of Microbiology and Immunology, Department of Pathology, Salt Lake City, UT 84112 (United States); Baker, Timothy S., E-mail: tsb@ucsd.edu [Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0378 (United States); University of California, San Diego, Division of Biological Sciences, La Jolla, CA, 92093 (United States)

    2014-09-15

    CUS-3 is a short-tailed, dsDNA bacteriophage that infects serotype K1 Escherichia coli. We report icosahedrally averaged and asymmetric, three-dimensional, cryo-electron microscopic reconstructions of the CUS-3 virion. Its coat protein structure adopts the “HK97-fold” shared by other tailed phages and is quite similar to that in phages P22 and Sf6 despite only weak amino acid sequence similarity. In addition, these coat proteins share a unique extra external domain (“I-domain”), suggesting that the group of P22-like phages has evolved over a very long time period without acquiring a new coat protein gene from another phage group. On the other hand, the morphology of the CUS-3 tailspike differs significantly from that of P22 or Sf6, but is similar to the tailspike of phage K1F, a member of the extremely distantly related T7 group of phages. We conclude that CUS-3 obtained its tailspike gene from a distantly related phage quite recently. - Highlights: • Asymmetric and symmetric three-dimensional reconstructions of phage CUS-3 are presented. • CUS-3 major capsid protein has a conserved I-domain, which is found in all three categories of “P22-like phage”. • CUS-3 has very different tailspike receptor binding domain from those of P22 and Sf6. • The CUS-3 tailspike likely was acquired by horizontal gene transfer.

  4. Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain

    International Nuclear Information System (INIS)

    Parent, Kristin N.; Tang, Jinghua; Cardone, Giovanni; Gilcrease, Eddie B.; Janssen, Mandy E.; Olson, Norman H.; Casjens, Sherwood R.; Baker, Timothy S.

    2014-01-01

    CUS-3 is a short-tailed, dsDNA bacteriophage that infects serotype K1 Escherichia coli. We report icosahedrally averaged and asymmetric, three-dimensional, cryo-electron microscopic reconstructions of the CUS-3 virion. Its coat protein structure adopts the “HK97-fold” shared by other tailed phages and is quite similar to that in phages P22 and Sf6 despite only weak amino acid sequence similarity. In addition, these coat proteins share a unique extra external domain (“I-domain”), suggesting that the group of P22-like phages has evolved over a very long time period without acquiring a new coat protein gene from another phage group. On the other hand, the morphology of the CUS-3 tailspike differs significantly from that of P22 or Sf6, but is similar to the tailspike of phage K1F, a member of the extremely distantly related T7 group of phages. We conclude that CUS-3 obtained its tailspike gene from a distantly related phage quite recently. - Highlights: • Asymmetric and symmetric three-dimensional reconstructions of phage CUS-3 are presented. • CUS-3 major capsid protein has a conserved I-domain, which is found in all three categories of “P22-like phage”. • CUS-3 has very different tailspike receptor binding domain from those of P22 and Sf6. • The CUS-3 tailspike likely was acquired by horizontal gene transfer

  5. Three dimensional reconstruction of human pachytene spermatocyte nuclei of a 17;21 reciprocal translocation carrier: study of XY-autosome relationships.

    Science.gov (United States)

    Guichaoua, M R; de Lanversin, A; Cataldo, C; Delafontaine, D; Alasia, C; Fraterno, M; Terriou, P; Stahl, A; Luciani, J M

    1991-10-01

    A study of XY-autosome relationships at the pachytene stage in an infertile 17-21 reciprocal translocation carrier was undertaken by means of three dimensional reconstruction. Synaptonemal complexes and the sex vesicle were analysed on electron microscopic serial sections and the reconstruction was performed on transparent sheets and on a Samba 2000 (Alcatel TITN) image analysis system. All asynapsed segments were entirely included in the sex vesicle, the chromatin fibre of the autosomes and sex chromosomes being tightly intermingled. In one nucleus, the four arms of the quadrivalent were paired, except around the breakpoints where an interstitial asynapsis was observed. In the other nuclei, a terminal asynapsis involving one or two arms of the quadrivalent was found. In the sex vesicle, autosomal asynapsed segments showed the same morphological characteristics as those of X and Y chromosomes. This observation agrees with the hypothesis of the extension of gene inactivation from sex chromosomes to autosomes.

  6. Original article The effect of three-dimensional imaging of well-known objects on time and accuracy of mental rotation

    Directory of Open Access Journals (Sweden)

    Piotr Francuz

    2014-07-01

    Full Text Available Background The purpose of this study was to verify hypotheses concerning the effect of three-dimensional imaging and the canonicity of objects presented in the original position on the reaction time (RT and the accuracy (A of mental rotation task (MRT execution. The classical paradigm of MRT, developed by Shepard and Metzler (1971, was used in the experiment. Participants and procedure One hundred fifty-eight undergraduate students (88 female and 70 male, aged 18-30 years, participated in the experiment. All participants had normal vision or corrected vision, and reported no stereo blindness. The sequential version of the MRT was used in the experiment. Participants answered whether the object observed in the second position was only rotated or both rotated and mirror-reversed, in comparison to its original position. The answer (accuracy and its latency (RT were recorded. Results As predicted by the mental rotation model, both the “U”-shaped A-MRT distribution and the inverted “U”-shaped RT-MRT distribution were found, due to the angular disparity. For the RT-MRT, this effect was more pronounced when the objects were displayed stereoscopically than in a plane, and when the objects were presented in the original position from the canonical orientation rather than an unusual point of view. On the other hand, in the case of the A-MRT, an effect of the orientation of objects presented in the original position on strengthening the relationship between accuracy and angular disparity was found. Conclusions The results indicated that the interactions between the presentation of the objects in the mental rotation task (stereoscopically vs. in a plane and the orientation of the object in its original position (canonically vs. unusual are more complicated than would appear from predictions of classical theories of mental rotation. The results of this study are discussed in relation to the theories of recognition and categorization.

  7. Application of Image Processing and Three-Dimensional Data Reconstruction Algorithm Based on Traffic Video in Vehicle Component Detection

    Directory of Open Access Journals (Sweden)

    Gang Li

    2017-01-01

    Full Text Available Vehicle detection is one of the important technologies in intelligent video surveillance systems. Owing to the perspective projection imaging principle of cameras, traditional two-dimensional (2D images usually distort the size and shape of vehicles. In order to solve these problems, the traffic scene calibration and inverse projection construction methods are used to project the three-dimensional (3D information onto the 2D images. In addition, a vehicle target can be characterized by several components, and thus vehicle detection can be fulfilled based on the combination of these components. The key characteristics of vehicle targets are distinct during a single day; for example, the headlight brightness is more significant at night, while the vehicle taillight and license plate color are much more prominent in the daytime. In this paper, by using the background subtraction method and Gaussian mixture model, we can realize the accurate detection of target lights at night. In the daytime, however, the detection of the license plate and taillight of a vehicle can be fulfilled by exploiting the background subtraction method and the Markov random field, based on the spatial geometry relation between the corresponding components. Further, by utilizing Kalman filters to follow the vehicle tracks, detection accuracy can be further improved. Finally, experiment results demonstrate the effectiveness of the proposed methods.

  8. Automated three-dimensional reconstruction and morphological analysis of dendritic spines based on semi-supervised learning.

    Science.gov (United States)

    Shi, Peng; Huang, Yue; Hong, Jinsheng

    2014-05-01

    A dendritic spine is a small membranous protrusion from a neuron's dendrite that typically receives input from a single synapse of an axon. Recent research shows that the morphological changes of dendritic spines have a close relationship with some specific diseases. The distribution of different dendritic spine phenotypes is a key indicator of such changes. Therefore, it is necessary to classify detected spines with different phenotypes online. Since the dendritic spines have complex three dimensional (3D) structures, current neuron morphological analysis approaches cannot classify the dendritic spines accurately with limited features. In this paper, we propose a novel semi-supervised learning approach in order to perform the online morphological classification of dendritic spines. Spines are detected by a new approach based on wavelet transform in the 3D space. A small training data set is chosen from the detected spines, which has the spines labeled by the neurobiologists. The remaining spines are then classified online by the semi-supervised learning (SSL) approach. Experimental results show that our method can quickly and accurately analyze neuron images with modest human intervention.

  9. IMPLEMENTATION OF THE GRADUATED CYLINDRICAL SHELL MODEL FOR THE THREE-DIMENSIONAL RECONSTRUCTION OF CORONAL MASS EJECTIONS

    International Nuclear Information System (INIS)

    Thernisien, A.

    2011-01-01

    The graduated cylindrical shell (GCS) model developed by Thernisien et al. has been used with the goal of studying the three-dimensional morphology, position, and kinematics of coronal mass ejections observed by coronagraphs. These studies focused more on the results rather than the details of the model itself. As more researchers begin to use the model, it becomes necessary to provide a deeper discussion on how it is derived, which is the purpose of this paper. The model is built using the following features and constraints: (1) the legs are conical, (2) the front is pseudo-circular, (3) the cross section is circular, and (4) it expands in a self-similar way. We derive the equation of the model from these constraints. We also show that the ice-cream cone model is a limit of the GCS when the two legs overlap completely. Finally, we provide formulae for the calculation of various geometrical dimensions, such as angular width and aspect ratio, as well as the pseudo-code that is used for its computer implementation.

  10. Customized Orbital Wall Reconstruction Using Three-Dimensionally Printed Rapid Prototype Model in Patients With Orbital Wall Fracture.

    Science.gov (United States)

    Oh, Tae Suk; Jeong, Woo Shik; Chang, Taik Jin; Koh, Kyung S; Choi, Jong-Woo

    2016-11-01

    It is difficult to restore original orbital contours because of their complex 3-dimensional structure. Moreover, slight implant malpositioning can result in enophthalmos or other complications. The authors describe our experience of using individualized prebent titanium-Medpor mesh implants and stereolithographic modeling in a series of patients who underwent orbital wall reconstruction. A consecutive series of 104 patients with orbital fractures received computer simulation-designed prebent titanium-Medpor mesh implants insertion. Preoperative computed tomography (CT) data were processed for each patient, and a rapid prototyping (RP) model was produced. The uninjured side was concurrently mirrored and superimposed onto the traumatized side to create a mirror image of the RP model. The authors fabricated the titanium-Medpor implants to intraoperatively reconstruct the 3-dimensional orbital structure. The prefabricated titanium-Medpor implants were inserted into the defective orbital wall and fixed. Postoperative CT images were immediately taken to evaluate the reconstructed contours and compare the preoperative and postoperative intraorbital volumes. All reconstructions were successful without postoperative complications. The implants were correctly positioned in the sagittal, axial, and coronal planes relative to the original orbital contours. The mean preoperative intraorbital volumes of the uninjured and traumatized sides were 21.39 ± 1.93 and 23.17 ± 2.00 cm, respectively, and the postoperative mean intraorbital volume was 20.74 ± 2.07 cm. Orbital reconstruction can be optimized using individually manufactured rapid prototype skull model and premolded synthetic scaffold by computer-aid of mirroring-reconstruction of 3-dimensional images and 3-dimensional printing techniques.

  11. Large to intermediate-scale aquifer heterogeneity in fine-grain dominated alluvial fans (Cenozoic As Pontes Basin, northwestern Spain): insight based on three-dimensional geostatistical reconstruction

    Science.gov (United States)

    Falivene, O.; Cabrera, L.; Sáez, A.

    2007-08-01

    Facies reconstructions are used in hydrogeology to improve the interpretation of aquifer permeability distribution. In the absence of sufficient data to define the heterogeneity due to geological processes, uncertainties in the distribution of aquifer hydrofacies and characteristics may appear. Geometric and geostatistical methods are used to understand and model aquifer hydrofacies distribution, providing models to improve comprehension and development of aquifers. However, these models require some input statistical parameters that can be difficult to infer from the study site. A three-dimensional reconstruction of a kilometer scale fine-grain dominated Cenozoic alluvial fan derived from more than 200 continuously cored, closely spaced, and regularly distributed wells is presented. The facies distributions were reconstructed using a genetic stratigraphic subdivision and a deterministic geostatistical algorithm. The reconstruction is only slightly affected by variations in the geostatistical input parameters because of the high-density data set. Analysis of the reconstruction allowed identification in the proximal to medial alluvial fan zones of several laterally extensive sand bodies with relatively higher permeability; these sand bodies were quantified in terms of volume, mean thickness, maximum area, and maximum equivalent diameter. These quantifications provide trends and geological scenarios for input statistical parameters to model aquifer systems in similar alluvial fan depositional settings.

  12. Three-dimensional intramolecular dynamics: Internal rotation of (CH{sub 3}){sub 3}GeBr

    Energy Technology Data Exchange (ETDEWEB)

    Schnell, Melanie [Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, D-14195 Berlin (Germany)], E-mail: schnell@fhi-berlin.mpg.de; Grabow, Jens-Uwe [Gottfried-Wilhelm-Leibniz-Universitaet Hannover, Institut fuer Physikalische Chemie, Lehrgebiet A, Callinstrasse 3-3a, D-30167 Hannover (Germany)

    2008-01-29

    The microwave spectra of (CH{sub 3}){sub 3}{sup 74}Ge{sup 79}Br and its isotopologues (CH{sub 3}){sub 3}{sup 72}Ge{sup 79}Br and (CH{sub 3}){sub 3}{sup 74}Ge{sup 81}Br have been studied in the frequency range from 2.4-20 GHz revealing the complex internal dynamics of this organometallic molecule with three internal rotors. The assignment of the complex spectrum has been facilitated by permutation-inversion theory - the appropriate molecular symmetry group is G{sub 162}. The V{sub 3} barrier to internal rotation is determined to be 4.783(12) kJ/mol. An analysis of the bromine quadrupole coupling yields the description of the Ge-Br and the Ge-C bonding characters. From this analysis we find that the bromine atom has a positive partial charge resulting from {pi}-backbonding of the bromine towards germanium. From isotopic substitution, the Ge-Br bond distance could be determined to 2.34589(21) A.

  13. [The dynamic concision for three-dimensional reconstruction of human organ built with virtual reality modeling language (VRML)].

    Science.gov (United States)

    Yu, Zhengyang; Zheng, Shusen; Chen, Huaiqing; Wang, Jianjun; Xiong, Qingwen; Jing, Wanjun; Zeng, Yu

    2006-10-01

    This research studies the process of dynamic concision and 3D reconstruction from medical body data using VRML and JavaScript language, focuses on how to realize the dynamic concision of 3D medical model built with VRML. The 2D medical digital images firstly are modified and manipulated by 2D image software. Then, based on these images, 3D mould is built with VRML and JavaScript language. After programming in JavaScript to control 3D model, the function of dynamic concision realized by Script node and sensor node in VRML. The 3D reconstruction and concision of body internal organs can be formed in high quality near to those got in traditional methods. By this way, with the function of dynamic concision, VRML browser can offer better windows of man-computer interaction in real time environment than before. 3D reconstruction and dynamic concision with VRML can be used to meet the requirement for the medical observation of 3D reconstruction and has a promising prospect in the fields of medical image.

  14. Three-dimensional reconstruction of the topographical cerebral surface anatomy for presurgical planning with free OsiriX Software.

    Science.gov (United States)

    Harput, Mehmet V; Gonzalez-Lopez, Pablo; Türe, Uğur

    2014-09-01

    During surgery for intrinsic brain lesions, it is important to distinguish the pathological gyrus from the surrounding normal sulci and gyri. This task is usually tedious because of the pia-arachnoid membranes with their arterial and venous complexes that obscure the underlying anatomy. Moreover, most tumors grow in the white matter without initially distorting the cortical anatomy, making their direct visualization more difficult. To create and evaluate a simple and free surgical planning tool to simulate the anatomy of the surgical field with and without vessels. We used free computer software (OsiriX Medical Imaging Software) that allowed us to create 3-dimensional reconstructions of the cerebral surface with and without cortical vessels. These reconstructions made use of magnetic resonance images from 51 patients with neocortical supratentorial lesions operated on over a period of 21 months (June 2011 to February 2013). The 3-dimensional (3-D) anatomic images were compared with the true surgical view to evaluate their accuracy. In all patients, the landmarks determined by 3-D reconstruction were cross-checked during surgery with high-resolution ultrasonography; in select cases, they were also checked with indocyanine green videoangiography. The reconstructed neurovascular structures were confirmed intraoperatively in all patients. We found this technique to be extremely useful in achieving pure lesionectomy, as it defines tumor's borders precisely. A 3-D reconstruction of the cortical surface can be easily created with free OsiriX software. This technique helps the surgeon perfect the mentally created 3-D picture of the tumor location to carry out cleaner, safer surgeries.

  15. Three-dimensional organization of vestibular-related eye movements to off-vertical axis rotation and linear translation in pigeons

    Science.gov (United States)

    Dickman, J. D.; Angelaki, D. E.

    1999-01-01

    During linear accelerations, compensatory reflexes should continually occur in order to maintain objects of visual interest as stable images on the retina. In the present study, the three-dimensional organization of the vestibulo-ocular reflex in pigeons was quantitatively examined during linear accelerations produced by constant velocity off-vertical axis yaw rotations and translational motion in darkness. With off-vertical axis rotations, sinusoidally modulated eye-position and velocity responses were observed in all three components, with the vertical and torsional eye movements predominating the response. Peak torsional and vertical eye positions occurred when the head was oriented with the lateral visual axis of the right eye directed orthogonal to or aligned with the gravity vector, respectively. No steady-state horizontal nystagmus was obtained with any of the rotational velocities (8-58 degrees /s) tested. During translational motion, delivered along or perpendicular to the lateral visual axis, vertical and torsional eye movements were elicited. No significant horizontal eye movements were observed during lateral translation at frequencies up to 3 Hz. These responses suggest that, in pigeons, all linear accelerations generate eye movements that are compensatory to the direction of actual or perceived tilt of the head relative to gravity. In contrast, no translational horizontal eye movements, which are known to be compensatory to lateral translational motion in primates, were observed under the present experimental conditions.

  16. Three dimensional electrochemical simulation of solid oxide fuel cell cathode based on microstructure reconstructed by marching cubes method

    Science.gov (United States)

    He, An; Gong, Jiaming; Shikazono, Naoki

    2018-05-01

    In the present study, a model is introduced to correlate the electrochemical performance of solid oxide fuel cell (SOFC) with the 3D microstructure reconstructed by focused ion beam scanning electron microscopy (FIB-SEM) in which the solid surface is modeled by the marching cubes (MC) method. Lattice Boltzmann method (LBM) is used to solve the governing equations. In order to maintain the geometries reconstructed by the MC method, local effective diffusivities and conductivities computed based on the MC geometries are applied in each grid, and partial bounce-back scheme is applied according to the boundary predicted by the MC method. From the tortuosity factor and overpotential calculation results, it is concluded that the MC geometry drastically improves the computational accuracy by giving more precise topology information.

  17. Segmental sandwich osteotomy and tunnel technique for three-dimensional reconstruction of the jaw atrophy: a case report.

    Science.gov (United States)

    Santagata, Mario; Sgaramella, Nicola; Ferrieri, Ivo; Corvo, Giovanni; Tartaro, Gianpaolo; D'Amato, Salvatore

    2017-12-01

    A three-dimensionally favourable mandibular bone crest is desirable to be able to successfully implant placement to meet the aesthetic and functional criteria in the implant-prosthetic rehabilitation. Several surgical procedures have been advocated for bone augmentation of the atrophic mandible, and the sandwich osteotomy is one of these techniques. The aim of the present case report was to assess the suitability of segmental mandibular sandwich osteotomy combined with a tunnel technique of soft tissue. Based on our knowledge, nobody described before the sandwich osteotomy with tunnel technique to improve the healing of the wound and meet the dimensional requirements of preimplant bone augmentation in cases of a severely atrophic mandible. A 59-year-old woman with a severely atrophied right mandible was treated with the sandwich osteotomy technique filled with autologous bone graft harvested by a cortical bone collector from the ramus. Clinical examination revealed that the mandible was edentulous bilaterally from the first molar to the second molar region. Radiographically, atrophy of the mandibular alveolar ridge in the same teeth site was observed. We began to treat the right side. A horizontal osteotomy of the edentulous mandibular bone was then made with a piezoelectric device after tunnel technique of the soft tissue. The segmental mandibular sandwich osteotomy (SMSO) was finished by two (mesial and distal) slightly divergent vertical osteotomies. The entire bone fragment was displaced cranially, and the desirable position was obtained. The gap was filled completely with autologous bone chips harvested from the mandibular ramus through a cortical bone collector. No barrier membranes were used to protect the grafts. The vertical incisions were closing with interruptive suturing of the flaps with a resorbable material. In this way, the suture will not fall on the osteotomy line of the jaw; the result will be a better predictability of soft and hard tissue

  18. Three-dimensional cryoEM reconstruction of native LDL particles to 16Å resolution at physiological body temperature.

    Directory of Open Access Journals (Sweden)

    Vibhor Kumar

    Full Text Available BACKGROUND: Low-density lipoprotein (LDL particles, the major carriers of cholesterol in the human circulation, have a key role in cholesterol physiology and in the development of atherosclerosis. The most prominent structural components in LDL are the core-forming cholesteryl esters (CE and the particle-encircling single copy of a huge, non-exchangeable protein, the apolipoprotein B-100 (apoB-100. The shape of native LDL particles and the conformation of native apoB-100 on the particles remain incompletely characterized at the physiological human body temperature (37 °C. METHODOLOGY/PRINCIPAL FINDINGS: To study native LDL particles, we applied cryo-electron microscopy to calculate 3D reconstructions of LDL particles in their hydrated state. Images of the particles vitrified at 6 °C and 37 °C resulted in reconstructions at ~16 Å resolution at both temperatures. 3D variance map analysis revealed rigid and flexible domains of lipids and apoB-100 at both temperatures. The reconstructions showed less variability at 6 °C than at 37 °C, which reflected increased order of the core CE molecules, rather than decreased mobility of the apoB-100. Compact molecular packing of the core and order in a lipid-binding domain of apoB-100 were observed at 6 °C, but not at 37 °C. At 37 °C we were able to highlight features in the LDL particles that are not clearly separable in 3D maps at 6 °C. Segmentation of apoB-100 density, fitting of lipovitellin X-ray structure, and antibody mapping, jointly revealed the approximate locations of the individual domains of apoB-100 on the surface of native LDL particles. CONCLUSIONS/SIGNIFICANCE: Our study provides molecular background for further understanding of the link between structure and function of native LDL particles at physiological body temperature.

  19. Utility of the three-dimensional reconstruction by means of helical scanography in the study of stringed instruments

    International Nuclear Information System (INIS)

    Morillo Zarate, Anibal Jose; Uriza Carrasco, Luis Felipe

    1998-01-01

    The evaluation of stringed instruments with axial computerized tomography (CT) sections has been described as a reliable method for the study of its internal components and for the detection of damaged instruments. We present the application of helical CT with thin sections and 3-D reconstructions in a series of violins, for an anatomical study of the instrument. The 3-D images offer complementary information and permit a better evaluation of the internal structure of the violin that can be useful for the understanding of the secrets of its construction and for the diagnosis of structural lesions that can affect its acoustic performance

  20. Three dimensional reconstruction of the human skeletal muscle mitochondrial network as a tool to assess mitochondrial content and structural organization

    DEFF Research Database (Denmark)

    Dahl, Rannvá; Larsen, Steen; Dohlmann, Tine L

    2015-01-01

    with 3D reconstruction was used as a tool to analyze mitochondrial morphology and measure mitochondrial fractional volume. Results: Most type I and type II muscle fibers have tubular highly interconnected profusion mitochondria, which are thicker and more structured in type I muscle fibers (Figure 1...... mitochondrial dynamics in response to life-style interventions and/or in certain pathologies. Our results question the classification of mitochondria into subsarcolemmal and intermyofibrillar pools, since they are physically interconnected. This article is protected by copyright. All rights reserved....

  1. Three dimensional rotating flow of Powell-Eyring nanofluid with non-Fourier's heat flux and non-Fick's mass flux theory

    Science.gov (United States)

    Ibrahim, Wubshet

    2018-03-01

    This article numerically examines three dimensional boundary layer flow of a rotating Powell-Eyring nanofluid. In modeling heat transfer processes, non-Fourier heat flux theory and for mass transfer non-Fick's mass flux theory are employed. This theory is recently re-initiated and it becomes the active research area to resolves some drawback associated with the famous Fourier heat flux and mass flux theory. The mathematical model of the flow problem is a system of non-linear partial differential equations which are obtained using the boundary layer analysis. The non-linear partial differential equations have been transformed into non-linear high order ordinary differential equations using similarity transformation. Employing bvp4c algorithm from matlab software routine, the numerical solution of the transformed ordinary differential equations is obtained. The governing equations are constrained by parameters such as rotation parameter λ , the non-Newtonian parameter N, dimensionless thermal relaxation and concentration relaxation parameters δt and δc . The impacts of these parameters have been discussed thoroughly and illustrated using graphs and tables. The findings show that thermal relaxation time δt reduces the thermal and concentration boundary layer thickness. Further, the results reveal that the rotational parameter λ has the effect of decreasing the velocity boundary layer thickness in both x and y directions. Further examination pinpoints that the skin friction coefficient along x-axis is an increasing and skin friction coefficient along y-axis is a decreasing function of rotation parameter λ . Furthermore, the non-Newtonian fluid parameter N has the characteristic of reducing the amount of local Nusselt numbers -f″ (0) and -g″ (0) both in x and y -directions.

  2. Three-dimensional image reconstruction of macula from stratus optical coherence tomography (OCT) for diagnosis of macular degeneration

    International Nuclear Information System (INIS)

    Arinilhaq; Widita, R

    2016-01-01

    Diagnosis of macular degeneration using a Stratus OCT with a fast macular thickness map (FMTM) method produced six B-scan images of macula from different angles. The images were converted into a retinal thickness chart to be evaluated by normal distribution percentile of data so that it can be classified as normal thickness of macula or as experiencing abnormality (e.g. thickening and thinning). Unfortunately, the diagnostic images only represent the retinal thickness in several areas of the macular region. Thus, this study is aims to obtain the entire retinal thickness in the macula area from Status OCT's output images. Basically, the volumetric image is obtained by combining each of the six images. Reconstruction consists of a series of processes such as pre-processing, segmentation, and interpolation. Linear interpolation techniques are used to fill the empty pixels in reconstruction matrix. Based on the results, this method is able to provide retinal thickness maps on the macula surface and the macula 3D image. Retinal thickness map can display the macula area which experienced abnormalities. The macula 3D image can show the layers of tissue in the macula that is abnormal. The system built cannot replace ophthalmologist in decision making in term of diagnosis. (paper)

  3. Three-dimensional image reconstruction of macula from stratus optical coherence tomography (OCT) for diagnosis of macular degeneration

    Science.gov (United States)

    Arinilhaq; Widita, R.

    2016-03-01

    Diagnosis of macular degeneration using a Stratus OCT with a fast macular thickness map (FMTM) method produced six B-scan images of macula from different angles. The images were converted into a retinal thickness chart to be evaluated by normal distribution percentile of data so that it can be classified as normal thickness of macula or as experiencing abnormality (e.g. thickening and thinning). Unfortunately, the diagnostic images only represent the retinal thickness in several areas of the macular region. Thus, this study is aims to obtain the entire retinal thickness in the macula area from Status OCT's output images. Basically, the volumetric image is obtained by combining each of the six images. Reconstruction consists of a series of processes such as pre-processing, segmentation, and interpolation. Linear interpolation techniques are used to fill the empty pixels in reconstruction matrix. Based on the results, this method is able to provide retinal thickness maps on the macula surface and the macula 3D image. Retinal thickness map can display the macula area which experienced abnormalities. The macula 3D image can show the layers of tissue in the macula that is abnormal. The system built cannot replace ophthalmologist in decision making in term of diagnosis.

  4. Formation of three-dimensional cell/polymer constructs for bone tissue engineering in a spinner flask and a rotating wall vessel bioreactor

    Science.gov (United States)

    Sikavitsas, Vassilios I.; Bancroft, Gregory N.; Mikos, Antonios G.; McIntire, L. V. (Principal Investigator)

    2002-01-01

    The aim of this study is to investigate the effect of the cell culture conditions of three-dimensional polymer scaffolds seeded with rat marrow stromal cells (MSCs) cultured in different bioreactors concerning the ability of these cells to proliferate, differentiate towards the osteoblastic lineage, and generate mineralized extracellular matrix. MSCs harvested from male Sprague-Dawley rats were culture expanded, seeded on three-dimensional porous 75:25 poly(D,L-lactic-co-glycolic acid) biodegradable scaffolds, and cultured for 21 days under static conditions or in two model bioreactors (a spinner flask and a rotating wall vessel) that enhance mixing of the media and provide better nutrient transport to the seeded cells. The spinner flask culture demonstrated a 60% enhanced proliferation at the end of the first week when compared to static culture. On day 14, all cell/polymer constructs exhibited their maximum alkaline phosphatase activity (AP). Cell/polymer constructs cultured in the spinner flask had 2.4 times higher AP activity than constructs cultured under static conditions on day 14. The total osteocalcin (OC) secretion in the spinner flask culture was 3.5 times higher than the static culture, with a peak OC secretion occurring on day 18. No considerable AP activity and OC secretion were detected in the rotating wall vessel culture throughout the 21-day culture period. The spinner flask culture had the highest calcium content at day 14. On day 21, the calcium deposition in the spinner flask culture was 6.6 times higher than the static cultured constructs and over 30 times higher than the rotating wall vessel culture. Histological sections showed concentration of cells and mineralization at the exterior of the foams at day 21. This phenomenon may arise from the potential existence of nutrient concentration gradients at the interior of the scaffolds. The better mixing provided in the spinner flask, external to the outer surface of the scaffolds, may explain the

  5. Three-dimensional lattice rotation in GaAs nanowire growth on hydrogen-silsesquioxane covered GaAs (001) using molecular beam epitaxy

    Science.gov (United States)

    Tran, Dat Q.; Pham, Huyen T.; Higashimine, Koichi; Oshima, Yoshifumi; Akabori, Masashi

    2018-05-01

    We report on crystallographic behaviors of inclined GaAs nanowires (NWs) self-crystallized on GaAs (001) substrate. The NWs were grown on hydrogen-silsesquioxane (HSQ) covered substrates using molecular beam epitaxy (MBE). Commonly, the epitaxial growth of GaAs B (B-polar) NWs is prominently observed on GaAs (001); however, we yielded a remarkable number of epitaxially grown GaAs A (A-polar) NWs in addition to the majorly obtained B-polar NWs. Such NW orientations are always accompanied by a typical inclined angle of 35° from (001) plane. NWs with another inclined angle of 74° were additionally observed and attributed to be -oriented, not in direct epitaxial relation with the substrate. Such 74° NWs' existence is related to first-order three-dimensional (3D) lattice rotation taking place at the very beginning of the growth. It turns out that spatially 60° lattice rotation around directions at GaAs seeds is essentially in charge of A- and B-polar 74° NWs. Transmission electron microscope observations reveal a high density of twinning in the B-polar NWs and twin-free characteristic in the A-polar NWs.

  6. Three dimensional reconstruction of energy stores for jumping in planthoppers and froghoppers from confocal laser scanning microscopy.

    Science.gov (United States)

    Siwanowicz, Igor; Burrows, Malcolm

    2017-06-21

    Jumping in planthopper and froghopper insects is propelled by a catapult-like mechanism requiring mechanical storage of energy and its quick release to accelerate the hind legs rapidly. To understand the functional biomechanics involved in these challenging movements, the internal skeleton, tendons and muscles involved were reconstructed in 3-D from confocal scans in unprecedented detail. Energy to power jumping was generated by slow contractions of hind leg depressor muscles and then stored by bending specialised elements of the thoracic skeleton that are composites of the rubbery protein resilin sandwiched between layers of harder cuticle with air-filled tunnels reducing mass. The images showed that the lever arm of the power-producing muscle changed in magnitude during jumping, but at all joint angles would cause depression, suggesting a mechanism by which the stored energy is released. This methodological approach illuminates how miniaturized components interact and function in complex and rapid movements of small animals.

  7. Three-Dimensional Reconstruction of Nuclear Envelope Architecture Using Dual-Color Metal-Induced Energy Transfer Imaging.

    Science.gov (United States)

    Chizhik, Anna M; Ruhlandt, Daja; Pfaff, Janine; Karedla, Narain; Chizhik, Alexey I; Gregor, Ingo; Kehlenbach, Ralph H; Enderlein, Jörg

    2017-12-26

    The nuclear envelope, comprising the inner and the outer nuclear membrane, separates the nucleus from the cytoplasm and plays a key role in cellular functions. Nuclear pore complexes (NPCs), which are embedded in the nuclear envelope, control transport of macromolecules between the two compartments. Here, using dual-color metal-induced energy transfer (MIET), we determine the axial distance between Lap2β and Nup358 as markers for the inner nuclear membrane and the cytoplasmic side of the NPC, respectively. Using MIET imaging, we reconstruct the 3D profile of the nuclear envelope over the whole basal area, with an axial resolution of a few nanometers. This result demonstrates that optical microscopy can achieve nanometer axial resolution in biological samples and without recourse to complex interferometric approaches.

  8. Three-dimensional reconstruction of the musculature of various life cycle stages of the cycliophoran Symbion americanus

    DEFF Research Database (Denmark)

    Cardoso Neves, Ricardo; Kristensen, Reinhardt Møbjerg; Wanninger, Andreas Wilhelm Georg

    2009-01-01

    Cycliophora is a very recently described phylum of acoelomate metazoans with a complex life cycle and a phylogenetic position that has been under debate ever since its discovery in 1995. Symbion americanus, which lives attached to the mouthparts of the American lobster, Homarus americanus......, represents the second species described for the phylum. Aiming to increase the morphological knowledge about this cryptic clade, the present study describes the muscle arrangement of the feeding stage, the attached Prometheus larva with the dwarf male inside, the free living male, the Pandora larva......, and the chordoid larva of S. americanus using actin staining and confocal laser scanning microscopy. 3D reconstructions of the muscular systems are presented. In the feeding stage, circular muscles compose the buccal funnel aperture. In addition, a pair of muscles runs longitudinally in the buccal funnel...

  9. The use of transport and diffusion equations in the three-dimensional reconstruction of computerized tomographic images

    Energy Technology Data Exchange (ETDEWEB)

    Pires, Sandrerley Ramos, E-mail: sandrerley@eee.ufg.br [Escola de Engenharia Eletrica e de Computacao - EEEC, Universidade Federal de Goias - UFG, Goiania, GO (Brazil); Flores, Edna Lucia; Pires, Dulcineia Goncalves F.; Carrijo, Gilberto Arantes; Veiga, Antonio Claudio Paschoarelli [Faculdade de Engenharia Eletrica - FEELT, Universidade Federal de Uberlandia - UFU, Uberlandia, MG (Brazil); Barcelos, Celia Aparecida Z. [Faculdade de Matematica, Universidade Federal de Uberlandia - UFU, Uberlandia, MG (Brazil)

    2012-09-15

    The visualization of a computerized tomographic (TC) exam in 3D increases the quality of the medical diagnosis and, consequently, the success probability in the treatment. To obtain a high quality image it is necessary to obtain slices which are close to one another. Motivated towards the goal of reaching an improved balance between quantity of slices and visualization quality, this research work presents a digital inpainting technique of 3D interpolation for CT slices used in the visualization of human body structures. The inpainting is carried out via non-linear partial differential equations (PDE). The PDE's have been used, in the image-processing context to fill in the damaged regions in a digital 2D image. Inspired by this idea, this article proposes an interpolation method for the filling in of the empty regions between the CT slices. To do it, considering the high similarity between two consecutive real slice, the first step of the proposed method is to create the virtual slices. The virtual slices contain all similarity between the intercalated slices and, when there are not similarities between real slices, the virtual slices will contain indefinite portions. In the second step of the proposed method, the created virtual slices will be used together with the real slices images, in the reconstruction of the structure in three dimensions, mapped onto the exam. The proposed method is capable of reconstructing the curvatures of the patient's internal structures without using slices that are close to one another. The experiments carried out show the proposed method's efficiency. (author)

  10. Upregulated epidermal growth factor receptor expression following near-infrared irradiation simulating solar radiation in a three-dimensional reconstructed human corneal epithelial tissue culture model.

    Science.gov (United States)

    Tanaka, Yohei; Nakayama, Jun

    2016-01-01

    Humans are increasingly exposed to near-infrared (NIR) radiation from both natural (eg, solar) and artificial (eg, electrical appliances) sources. Although the biological effects of sun and ultraviolet (UV) exposure have been extensively investigated, the biological effect of NIR radiation is still unclear. We previously reported that NIR as well as UV induces photoaging and standard UV-blocking materials, such as sunglasses, do not sufficiently block NIR. The objective of this study was to investigate changes in gene expression in three-dimensional reconstructed corneal epithelial tissue culture exposed to broad-spectrum NIR irradiation to simulate solar NIR radiation that reaches human tissues. DNA microarray and quantitative real-time polymerase chain reaction analysis were used to assess gene expression levels in a three-dimensional reconstructed corneal epithelial model composed of normal human corneal epithelial cells exposed to water-filtered broad-spectrum NIR irradiation with a contact cooling (20°C). The water-filter allowed 1,000-1,800 nm wavelengths and excluded 1,400-1,500 nm wavelengths. A DNA microarray with >62,000 different probes showed 25 and 150 genes that were up- or downregulated by at least fourfold and twofold, respectively, after NIR irradiation. In particular, epidermal growth factor receptor (EGFR) was upregulated by 19.4-fold relative to control cells. Quantitative real-time polymerase chain reaction analysis revealed that two variants of EGFR in human corneal epithelial tissue were also significantly upregulated after five rounds of 10 J/cm(2) irradiation (Psolar energy reaching the Earth is in the NIR region, which cannot be adequately blocked by eyewear and thus can induce eye damage with intensive or long-term exposure, protection from both UV and NIR radiation may prevent changes in gene expression and in turn eye damage.

  11. Three-dimensional surgical modelling with an open-source software protocol: study of precision and reproducibility in mandibular reconstruction with the fibula free flap.

    Science.gov (United States)

    Ganry, L; Quilichini, J; Bandini, C M; Leyder, P; Hersant, B; Meningaud, J P

    2017-08-01

    Very few surgical teams currently use totally independent and free solutions to perform three-dimensional (3D) surgical modelling for osseous free flaps in reconstructive surgery. This study assessed the precision and technical reproducibility of a 3D surgical modelling protocol using free open-source software in mandibular reconstruction with fibula free flaps and surgical guides. Precision was assessed through comparisons of the 3D surgical guide to the sterilized 3D-printed guide, determining accuracy to the millimetre level. Reproducibility was assessed in three surgical cases by volumetric comparison to the millimetre level. For the 3D surgical modelling, a difference of less than 0.1mm was observed. Almost no deformations (free flap modelling was between 0.1mm and 0.4mm, and the average precision of the complete reconstructed mandible was less than 1mm. The open-source software protocol demonstrated high accuracy without complications. However, the precision of the surgical case depends on the surgeon's 3D surgical modelling. Therefore, surgeons need training on the use of this protocol before applying it to surgical cases; this constitutes a limitation. Further studies should address the transfer of expertise. Copyright © 2017 International Association of Oral and Maxillofacial Surgeons. Published by Elsevier Ltd. All rights reserved.

  12. Clinical application of scalp markers and three-dimensional sliced computer tomography reconstructions of the skull transverse-sigmoid sinus groove in the retrosigmoid approach.

    Science.gov (United States)

    Wang, Chao; Guoqiang, Han; You, Chao; Liu, Chuangxi

    2017-01-17

    To explore the clinical value of bone flap creation and the sinus protection in the approach of retrosigmoid keyhole craniotomy with the guidance of three-dimensional (3D) sliced computer tomography (CT) reconstruction of the skull transverse sinus and sigmoid sinus groove. The scalp tracings of the transverse sinus and sigmoid sinus groove of 108 posterior fossa lesion patients were delineated by gentian violet, which relies on the relationship between its 3D reconstruction location and scalp marker. The craniotomy was executed with the guidance of its surface tracings. The intraoperative findings of exposure and damage of transverse sinus, sigmoid sinus, morphology, stability, complications, and postoperative appearance of bone flap restoration were evaluated. Morphological analysis of the transverse-sigmoid sinus groove showed right superiority, left superiority, and balanced type in 61, 18, and 29 cases, respectively, and the relationship between the asterion and the transverse-sigmoid sinus groove showed that asterion sites were located in the upper portion, onto, and below the transverse and sigmoid sinus groove in 19, 68, and 21 cases, respectively. Good intraoperative exposure without damage of transverse sinus and sigmoid sinus, good stability and appearance of bone flap restoration, and no postoperative pseudomeningocele were obtained after using this method to locate the transverse sinus and sigmoid sinus. The 3D sliced CT reconstruction of the skull transverse sinus and sigmoid sinus groove was helpful in the approach of retrosigmoid craniotomy for sinus exposure, sinus protection, and the prevention of cerebrospinal fluid leakage and pseudomeningocele.

  13. Three-dimensional structure of peripheral exocrine gland in rat pancreas: reconstruction using transmission electron microscopic examination of serial sections.

    Science.gov (United States)

    Ashizawa, Nobuo; Sakai, Toshio; Yoneyama, Tsunao; Naora, Hiroyuki; Kinoshita, Yoshikazu

    2005-11-01

    The purpose of this study was to elucidate the 3-dimensional structure of the peripheral pancreatic exocrine gland. We observed serial sections of rat pancreatic tissue using a transmission electron microscope and traced the intercalated duct lumina, intra-acinar secretory canaliculi, intercalated duct cells or centroacinar cells, and basement membranes of acini onto a transparent sheet. These traced diagrams were reconstructed. The intra-acinar secretory canaliculus had branches but no anastomosis. The intercellular secretory canaliculus was extended from the central lumen through the space between the lateral surfaces of the acinar cells to the acinar base. Furthermore, the cytoplasmic process of each centroacinar cell was extended along the central lumen and connected to an intercalated duct cell; thus, centroacinar cells with the same structure as intercalated duct cells were not isolated from the intercalated duct cells. In this study, we elucidated the normal 3-dimensional structure of the peripheral pancreatic exocrine gland. To understand the pathogenesis of chronic pancreatitis, in the future we intend to examine the morphologic changes of pancreatic tissue during the onset and advancement of chronic pancreatitis using animal models.

  14. Boundary Inheritance Codec for high-accuracy structured light three-dimensional reconstruction with comparative performance evaluation.

    Science.gov (United States)

    Bui, Lam Quang; Lee, Sukhan

    2013-08-01

    This paper presents a new method of structured light-based 3D reconstruction, referred to here as Boundary Inheritance Codec, that provides high accuracy and low noise in projector-camera correspondence. The proposed method features (1) real-boundary recovery: the exact locations of region boundaries, defined by a coded pattern, are identified in terms of their real coordinates on the image plane. To this end, a radiance independent recovery of accurate boundaries and a disambiguation of true and false boundaries are presented. (2) Boundary inheritance: the consistency among the same boundaries of different layers in pattern hierarchy is exploited to further enhance the accuracy of region correspondence and boundary estimation. Extensive experimentations are carried out to verify the performance of the proposed Boundary Inheritance Codec, especially, in comparison with a number of well-known methods currently available, including Gray-code (GC) plus line/phase shift (LS/PS). The results indicate that the proposed method of recovering real boundaries with boundary inheritance is superior in accuracy and robustness to Gray-code inverse (GCI), GC+LS/PS. For instance, the error standard deviation and the percentile of outliers of the proposed method were 0.152 mm and 0.089%, respectively, while those of GCI were 0.312 mm and 3.937%, respectively, and those of GC+LS/PS were 0.280/0.321 mm and 0.159/7.074%, respectively.

  15. Three-dimensional volumetric analysis of ghost cell odontogenic carcinoma using 3-D reconstruction software: a case report.

    Science.gov (United States)

    Gomes, João Pedro Perez; Costa, Andre Luiz Ferreira; Chone, Carlos Takahiro; Altemani, Albina Messias de Almeida Milani; Altemani, João Maurício Carrasco; Lima, Carmen Silvia Passos

    2017-05-01

    Ghost cell odontogenic carcinoma is a very rare malignant neoplasm. Tumor volume may be a more precise alternative for determining size, which is usually measured by maximum linear dimension. The purpose of this case report is to highlight the importance of obtaining 3-dimensional (3-D) images of the tumor for volumetric analysis to improve the chances of surgical success. This report presents a case of ghost cell odontogenic carcinoma infiltrating the maxillary sinus through the palate. The lesion was surgically treated and subsequently selected for volumetric reconstruction and analysis of the tumor by using InVesalius software. In this case report, we describe the use of a pictorial technique in which the tumor volume was calculated to help predict the surgical results. The tumor could be visualized in 3-D, with color improving the image of the segmented volume and thus increasing the perception of boundaries and depth. Recognition of the lesion shape by volumetric analysis can provide the surgical team with clearer information, thereby helping in surgical planning and consequently increasing the chances of surgical success. Copyright © 2017 Elsevier Inc. All rights reserved.

  16. A three-dimensional-weighted cone beam filtered backprojection (CB-FBP) algorithm for image reconstruction in volumetric CT-helical scanning

    International Nuclear Information System (INIS)

    Tang Xiangyang; Hsieh Jiang; Nilsen, Roy A; Dutta, Sandeep; Samsonov, Dmitry; Hagiwara, Akira

    2006-01-01

    Based on the structure of the original helical FDK algorithm, a three-dimensional (3D)-weighted cone beam filtered backprojection (CB-FBP) algorithm is proposed for image reconstruction in volumetric CT under helical source trajectory. In addition to its dependence on view and fan angles, the 3D weighting utilizes the cone angle dependency of a ray to improve reconstruction accuracy. The 3D weighting is ray-dependent and the underlying mechanism is to give a favourable weight to the ray with the smaller cone angle out of a pair of conjugate rays but an unfavourable weight to the ray with the larger cone angle out of the conjugate ray pair. The proposed 3D-weighted helical CB-FBP reconstruction algorithm is implemented in the cone-parallel geometry that can improve noise uniformity and image generation speed significantly. Under the cone-parallel geometry, the filtering is naturally carried out along the tangential direction of the helical source trajectory. By exploring the 3D weighting's dependence on cone angle, the proposed helical 3D-weighted CB-FBP reconstruction algorithm can provide significantly improved reconstruction accuracy at moderate cone angle and high helical pitches. The 3D-weighted CB-FBP algorithm is experimentally evaluated by computer-simulated phantoms and phantoms scanned by a diagnostic volumetric CT system with a detector dimension of 64 x 0.625 mm over various helical pitches. The computer simulation study shows that the 3D weighting enables the proposed algorithm to reach reconstruction accuracy comparable to that of exact CB reconstruction algorithms, such as the Katsevich algorithm, under a moderate cone angle (4 deg.) and various helical pitches. Meanwhile, the experimental evaluation using the phantoms scanned by a volumetric CT system shows that the spatial resolution along the z-direction and noise characteristics of the proposed 3D-weighted helical CB-FBP reconstruction algorithm are maintained very well in comparison to the FDK

  17. The Importance of a Conchal Bowl Element in the Fabrication of a Three-Dimensional Framework in Total Auricular Reconstruction

    Directory of Open Access Journals (Sweden)

    Young Soo Kim

    2013-05-01

    Full Text Available Background  To construct a sophisticated three-dimensionalframework, numerousmodifications have been reported in the literature. However, mostsurgeons have paid little attentionto the anatomical configuration of the concha and more to its deepness and hollowness,leading to unsatisfactory outcomes.Methods  For a configuration ofthe concha thatis definitely anatomical,the authorfurtherdeveloped and employed the conchal bowl element,which has been used by severalsurgeonsalthough the results have not been published elsewhere. The author constructed the conchalbowl element in one of three patterns according to the amount of available cartilages: oneblock,two-pieces, or a cymba bowl element only. A total of 20 patients underwent auricularreconstruction using a costal cartilage framework between 2009 and 2012. The 8 earliestreconstructionswere performedwithout a conchal bowl element and the latter 12with a conchalbowl element. The patientswere followed up for more than 1 year. The aesthetic resultswerescored by evaluating characteristicsinvolving the stability ofthe crus helicis,the conchal definition, and the smoothness ofthe helical curve.Results  The earsreconstructed earlywithout a conchal bowl elementshowed a shallowandone or two incompletely separated concha with an obliterated cymba conchal space. Theyalso did not have a realistic orsmooth curve ofthe helix because of an unstable crus helicis.However, earsreconstructed laterwith the concha bowl elementshowed a definite crus helicis,deep cymba conchalspace, and smooth helical curve.Conclusions  The construction of the conchal bowl element is simple, not time-consumingprocedure. It is suggested that the conchal bowl element must be constructed and attachedto themain framework for natural configuration ofthe reconstructed ear.

  18. Three-dimensional reconstruction of prostate cancer architecture with serial immunohistochemical sections: hallmarks of tumour growth, tumour compartmentalisation, and implications for grading and heterogeneity.

    Science.gov (United States)

    Tolkach, Yuri; Thomann, Stefan; Kristiansen, Glen

    2018-05-01

    Conventional morphology of prostate cancer considers only the two-dimensional (2D) architecture of the tumour. Our aim was to examine the feasibility of three-dimensional (3D) reconstruction of tumour morphology based on multiple consecutive histological sections and to decipher relevant features of prostate cancer architecture. Seventy-five consecutive histological sections (5 μm) of a typical prostate adenocarcinoma (Gleason score of 3 + 4 = 7) were immunostained (pan-cytokeratin) and scanned for further 3D reconstructions with fiji/imagej software. The main findings related to the prostate cancer architecture in this case were: (i) continuity of all glands, with the tumour being an integrated system, even in Gleason pattern 4 with poorly formed glands-no short-range migration of cells by Gleason pattern 4 (poorly formed glands); (ii) no repeated interconnections between the glands, with a tumour building a tree-like branched structure with very 'plastic' branches (maximal depth of investigation 375 μm); (iii) very stark compartmentalisation of the tumour related to extensive branching, the coexistence of independent terminal units of such branches in one 2D slice explaining intratumoral heterogeneity; (iv) evidence of a craniocaudal growth direction in interglandular regions of the prostate and for a lateromedial growth direction in subcapsular posterolateral regions; and (v) a 3D architecture-based description of Gleason pattern 4 with poorly formed glands, and its continuum with Gleason pattern 3. Consecutive histological sections provide high-quality material for 3D reconstructions of the tumour architecture, with excellent resolution. The reconstruction of multiple regions in this typical case of a Gleason score 3 + 4 = 7 tumour provides insights into relevant aspects of tumour growth, the continuity of Gleason patterns 3 and 4, and tumour heterogeneity. © 2018 John Wiley & Sons Ltd.

  19. Comparison of three-dimensional optical coherence tomography and combining a rotating Scheimpflug camera with a Placido topography system for forme fruste keratoconus diagnosis.

    Science.gov (United States)

    Fukuda, Shinichi; Beheregaray, Simone; Hoshi, Sujin; Yamanari, Masahiro; Lim, Yiheng; Hiraoka, Takahiro; Yasuno, Yoshiaki; Oshika, Tetsuro

    2013-12-01

    To evaluate the ability of parameters measured by three-dimensional (3D) corneal and anterior segment optical coherence tomography (CAS-OCT) and a rotating Scheimpflug camera combined with a Placido topography system (Scheimpflug camera with topography) to discriminate between normal eyes and forme fruste keratoconus. Forty-eight eyes of 48 patients with keratoconus, 25 eyes of 25 patients with forme fruste keratoconus and 128 eyes of 128 normal subjects were evaluated. Anterior and posterior keratometric parameters (steep K, flat K, average K), elevation, topographic parameters, regular and irregular astigmatism (spherical, asymmetry, regular and higher-order astigmatism) and five pachymetric parameters (minimum, minimum-median, inferior-superior, inferotemporal-superonasal, vertical thinnest location of the cornea) were measured using 3D CAS-OCT and a Scheimpflug camera with topography. The area under the receiver operating curve (AUROC) was calculated to assess the discrimination ability. Compatibility and repeatability of both devices were evaluated. Posterior surface elevation showed higher AUROC values in discrimination analysis of forme fruste keratoconus using both devices. Both instruments showed significant linear correlations (p<0.05, Pearson's correlation coefficient) and good repeatability (ICCs: 0.885-0.999) for normal and forme fruste keratoconus. Posterior elevation was the best discrimination parameter for forme fruste keratoconus. Both instruments presented good correlation and repeatability for this condition.

  20. Upregulated epidermal growth factor receptor expression following near-infrared irradiation simulating solar radiation in a three-dimensional reconstructed human corneal epithelial tissue culture model

    Directory of Open Access Journals (Sweden)

    Tanaka Y

    2016-08-01

    Full Text Available Yohei Tanaka,1,2 Jun Nakayama2 1Department of Plastic Surgery, Clinica Tanaka Plastic, Reconstructive Surgery and Anti-aging Center, 2Department of Molecular Pathology, Shinshu University Graduate School of Medicine, Matsumoto, Nagano, Japan Background and objective: Humans are increasingly exposed to near-infrared (NIR radiation from both natural (eg, solar and artificial (eg, electrical appliances sources. Although the biological effects of sun and ultraviolet (UV exposure have been extensively investigated, the biological effect of NIR radiation is still unclear. We previously reported that NIR as well as UV induces photoaging and standard UV-blocking materials, such as sunglasses, do not sufficiently block NIR. The objective of this study was to investigate changes in gene expression in three-dimensional reconstructed corneal epithelial tissue culture exposed to broad-spectrum NIR irradiation to simulate solar NIR radiation that reaches human tissues.Materials and methods: DNA microarray and quantitative real-time polymerase chain reaction analysis were used to assess gene expression levels in a three-dimensional reconstructed corneal epithelial model composed of normal human corneal epithelial cells exposed to water-filtered broad-spectrum NIR irradiation with a contact cooling (20°C. The water-filter allowed 1,000–1,800 nm wavelengths and excluded 1,400–1,500 nm wavelengths.Results: A DNA microarray with >62,000 different probes showed 25 and 150 genes that were up- or downregulated by at least fourfold and twofold, respectively, after NIR irradiation. In particular, epidermal growth factor receptor (EGFR was upregulated by 19.4-fold relative to control cells. Quantitative real-time polymerase chain reaction analysis revealed that two variants of EGFR in human corneal epithelial tissue were also significantly upregulated after five rounds of 10 J/cm2 irradiation (P<0.05.Conclusion: We found that NIR irradiation induced the

  1. A practical method for three-dimensional reconstruction of joints using a C-arm system and shift-and-add algorithm

    International Nuclear Information System (INIS)

    Li Senhu; Jiang Huabei

    2005-01-01

    Currently, radiography with C-arm systems is playing a major role in the assessment of arthritis. However, the radiographic two-dimensional projection images of joints often interfere with physicians' efforts to better understand and measure the structure changes of joints due to the overlap of bone structures at different depths. An accurate, low-cost, and practical three-dimensional (3D) reconstruction approach of joints will be beneficial in diagnosing arthritis. Toward this end, a novel method is developed in this paper based on a C-arm system. The idea is to apply the shift-and-add algorithm (commonly used in digital tomosynthesis) on the segmented projection images at multiple angles, which results in accurate reconstruction of the 3D structures of joints. The method provides a new solution to precisely distinguish objects from blurring background. The proposed method has been tested and evaluated on simulated cylinders, a chicken bone phantom with known structure, and an in vivo human index finger. The results are demonstrated and discussed

  2. Precision of three-dimensional stereo-photogrammetry (3dMD™) in anthropometry of the auricle and its application in microtia reconstruction.

    Science.gov (United States)

    Chen, Zung-Chung; Albdour, Mohammad Nayef; Lizardo, Jesus Ablaza; Chen, Ying-An; Chen, Philip Kuo-Ting

    2015-05-01

    The advent of three-dimensional stereo-photogrammetry in recent years has vastly helped the craniomaxillofacial field improve in terms of preoperative and intraoperative decision making. With regard to the auricle though, there is paucity of research as to the application of this promising technology. A total of 20 normal adult ears were included in this study. Thirteen anthropometric measurements were taken, twice by two plastic surgeons using direct measurement (DM) and through images captured via 3dMD™. The purpose was to compare the reliability of measurements involving the two instruments. The overall mean absolute differences (MADs) of all ear anthropometries of DM and 3dMD™ were 0.52 mm (range: 0.28-0.72 mm) and 0.27 mm (range: 0.15-0.53 mm), respectively, and the grand mean relative error magnitudes (REMs) were 2.85% (range: 1.01-5.99%) and 1.57% (range: 0.48-3.62%), respectively, across observers. Thus, the precision of all ear anthropometries across observers was high in both methods, but the precision of 3dMD was better than DM irrespective of observers. In addition, the MADs were less than a millimeter across all measurements. The application of three-dimensional technology in microtia surgery for both template production and soft tissue analysis leads to improved planning and satisfactory results with fewer complications. We believe that with further refinement and enhancement, the use of this innovation will pave the way for prefabricated, individualized autologous or biocompatible alloplastic implantable frameworks based on an accurate mirror image of each patient's normal ear in unilateral cases and in bilateral cases, appropriately sized. Copyright © 2015 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  3. Reconstruction of 3D flow structures in a cylindrical cavity with a rotating lid

    DEFF Research Database (Denmark)

    Meyer, Knud Erik

    The flow in a cylindrical cavity with a rotating lid has been studied for many years, e.g. by Sørensen et al (2006). It contains general flow phenomena like vortex breakdown and in some cases the break down is accompanied by multihelix vortices (Okulov et al, 2010). This type of flow phenomenon......) is a promising method of reconstructing the full three dimensional, time-varying flow structures. This has been attempted in Meyer et al (2008) and Meyer et al (2009). The analyzed measurements show both that the vortex breakdown in some cases is asymmetrical (rotating around the cylinder axis...

  4. Three-dimensional, three-component wall-PIV

    Science.gov (United States)

    Berthe, André; Kondermann, Daniel; Christensen, Carolyn; Goubergrits, Leonid; Garbe, Christoph; Affeld, Klaus; Kertzscher, Ulrich

    2010-06-01

    This paper describes a new time-resolved three-dimensional, three-component (3D-3C) measurement technique called wall-PIV. It was developed to assess near wall flow fields and shear rates near non-planar surfaces. The method is based on light absorption according to Beer-Lambert’s law. The fluid containing a molecular dye and seeded with buoyant particles is illuminated by a monochromatic, diffuse light. Due to the dye, the depth of view is limited to the near wall layer. The three-dimensional particle positions can be reconstructed by the intensities of the particle’s projection on an image sensor. The flow estimation is performed by a new algorithm, based on learned particle trajectories. Possible sources of measurement errors related to the wall-PIV technique are analyzed. The accuracy analysis was based on single particle experiments and a three-dimensional artificial data set simulating a rotating sphere.

  5. Three-dimensional short-range MR angiography and multiplanar reconstruction images in the evaluation of neurovascular compression in hemifacial spasm

    Energy Technology Data Exchange (ETDEWEB)

    Choi, Woo Suk; Kim, Eui Jong; Lee, Jae Gue; Rhee, Bong Arm [Kyunghee Univ. Hospital, Seoul (Korea, Republic of)

    1998-08-01

    To evaluate the diagnostic efficacy of three-dimensional(3D) short-range MR angiography(MRA) and multiplanar reconstruction(MPR) imaging in hemifacial spasm(HS). Materials and Methods : Two hundreds patients with HS were studied using a 1.5T MRI system with a 3D time-of-flight(TOF) MRA sequence. To reconstruct short-range MRA, 6-10 source images near the 7-8th cranial nerve complex were processed using a maximum-intensity projection technique. In addition, an MPR technique was used to investigate neurovascular compression. We observed the relationship between the root-exit zone(REZ) of the 7th cranial nerve and compressive vessel, and identified the compressive vessels on symptomatic sides. To investigate neurovascular contact, asymptomatic contralateral sides were also evaluated. Results : MRI showed that in 197 of 200 patients there was vascular compression or contact with the facial nerve REZ on symptomatic sides. One of the three remaining patients was suffering from acoustic neurinoma on the symptomatic side, while in two patients there were no definite abnormal findings.Compressive vessels were demonstrated in all 197 patients; 80 cases involved the anterior inferior cerebellar artery(AICA), 74 the posterior cerebellar artery(PICA), 13 the vertebral artery(VA), 16 the VA and AICA, eight the VA and PICA, and six the AICA and PICA. In all 197 patients, compressive vessels were reconstructed on one 3D short-range MRA image without discontinuation from vertebral or basilar arteries. 3D MPR studies provided additional information such as the direction of compression and course of the compressive vessel. In 31 patients there was neurovascular contact on the contralateral side at the 7-8th cranial nerve complex. Conclusion : Inpatients with HS, 3D short-range MRA and MPR images are excellent and very helpful for the investigation of neurovascular compression and the identification of compressive vessels.

  6. In vivo three-dimensional imaging analysis of femoral and tibial tunnel locations in single and double bundle anterior cruciate ligament reconstructions.

    Science.gov (United States)

    Yang, Jae-Hyuk; Chang, Minho; Kwak, Dai-Soon; Jang, Ki-Mo; Wang, Joon Ho

    2014-03-01

    Anatomic footprint restoration of anterior cruciate ligament (ACL) is recommended during reconstruction surgery. The purpose of this study was to compare and analyze the femoral and tibial tunnel positions of transtibial single bundle (SB) and transportal double bundle (DB) ACL reconstruction using three-dimensional computed tomography (3D-CT). In this study, 26 patients who underwent transtibial SB ACL reconstruction and 27 patients with transportal DB ACL reconstruction using hamstring autograft. 3D-CTs were taken within 1 week after the operation. The obtained digital images were then imported into the commercial package Geomagic Studio v10.0. The femoral tunnel positions were evaluated using the quadrant method. The mean, standard deviation, standard error, minimum, maximum, and 95% confidence interval values were determined for each measurement. The femoral tunnel for the SB technique was located 35.07% ± 5.33% in depth and 16.62% ± 4.99% in height. The anteromedial (AM) and posterolateral (PL) tunnel of DB technique was located 30.48% ± 5.02% in depth, 17.12% ± 5.84% in height and 34.76% ± 5.87% in depth, 45.55% ± 6.88% in height, respectively. The tibial tunnel with the SB technique was located 45.43% ± 4.81% from the anterior margin and 47.62% ± 2.51% from the medial tibial articular margin. The AM and PL tunnel of the DB technique was located 33.76% ± 7.83% from the anterior margin, 45.56% ± 2.71% from the medial tibial articular margin and 53.19% ± 3.74% from the anterior margin, 46.00% ± 2.48% from the medial tibial articular margin, respectively. The tibial tunnel position with the transtibial SB technique was located between the AM and PL tunnel positions formed with the transportal DB technique. Using the 3D-CT measuring method, the location of the tibia tunnel was between the AM and PL footprints, but the center of the femoral tunnel was at more shallow position from the AM bundle footprint when ACL reconstruction was performed by the

  7. Numerical Simulation of Mass Transfer and Three-Dimensional Fabrication of Tissue-Engineered Cartilages Based on Chitosan/Gelatin Hybrid Hydrogel Scaffold in a Rotating Bioreactor.

    Science.gov (United States)

    Zhu, Yanxia; Song, Kedong; Jiang, Siyu; Chen, Jinglian; Tang, Lingzhi; Li, Siyuan; Fan, Jiangli; Wang, Yiwei; Zhao, Jiaquan; Liu, Tianqing

    2017-01-01

    Cartilage tissue engineering is believed to provide effective cartilage repair post-injuries or diseases. Biomedical materials play a key role in achieving successful culture and fabrication of cartilage. The physical properties of a chitosan/gelatin hybrid hydrogel scaffold make it an ideal cartilage biomimetic material. In this study, a chitosan/gelatin hybrid hydrogel was chosen to fabricate a tissue-engineered cartilage in vitro by inoculating human adipose-derived stem cells (ADSCs) at both dynamic and traditional static culture conditions. A bioreactor that provides a dynamic culture condition has received greater applications in tissue engineering due to its optimal mass transfer efficiency and its ability to simulate an equivalent physical environment compared to human body. In this study, prior to cell-scaffold fabrication experiment, mathematical simulations were confirmed with a mass transfer of glucose and TGF-β2 both in rotating wall vessel bioreactor (RWVB) and static culture conditions in early stage of culture via computational fluid dynamic (CFD) method. To further investigate the feasibility of the mass transfer efficiency of the bioreactor, this RWVB was adopted to fabricate three-dimensional cell-hydrogel cartilage constructs in a dynamic environment. The results showed that the mass transfer efficiency of RWVB was faster in achieving a final equilibrium compared to culture in static culture conditions. ADSCs culturing in RWVB expanded three times more compared to that in static condition over 10 days. Induced cell cultivation in a dynamic RWVB showed extensive expression of extracellular matrix, while the cell distribution was found much more uniformly distributing with full infiltration of extracellular matrix inside the porous scaffold. The increased mass transfer efficiency of glucose and TGF-β2 from RWVB promoted cellular proliferation and chondrogenic differentiation of ADSCs inside chitosan/gelatin hybrid hydrogel scaffolds. The

  8. Characterization of a detector chain using a FPGA-based time-to-digital converter to reconstruct the three-dimensional coordinates of single particles at high flux

    Energy Technology Data Exchange (ETDEWEB)

    Nogrette, F.; Chang, R.; Bouton, Q.; Westbrook, C. I.; Clément, D. [Laboratoire Charles Fabry, Institut d’Optique Graduate School, CNRS, Univ. Paris-Saclay, 91127 Palaiseau cedex (France); Heurteau, D.; Sellem, R. [Fédération de Recherche LUMAT (DTPI), CNRS, Univ. Paris-Sud, Institut d’Optique Graduate School, Univ. Paris-Saclay, F-91405 Orsay (France)

    2015-11-15

    We report on the development of a novel FPGA-based time-to-digital converter and its implementation in a detection chain that records the coordinates of single particles along three dimensions. The detector is composed of micro-channel plates mounted on top of a cross delay line and connected to fast electronics. We demonstrate continuous recording of the timing signals from the cross delay line at rates up to 4.1 × 10{sup 6} s{sup −1} and three-dimensional reconstruction of the coordinates up to 3.2 × 10{sup 6} particles per second. From the imaging of a calibrated structure we measure the in-plane resolution of the detector to be 140(20) μm at a flux of 3 × 10{sup 5} particles per second. In addition, we analyze a method to estimate the resolution without placing any structure under vacuum, a significant practical improvement. While we use UV photons here, the results of this work apply to the detection of other kinds of particles.

  9. Three-Dimensional Microstructure Reconstruction and Finite Element Simulation of Gas Pores in the High-Pressure Die-Casting AZ91 Mg Alloy.

    Science.gov (United States)

    Jiang, Wei; Cao, Zhanyi; Sun, Xu; Liu, Haifeng

    2015-12-01

    High-pressure die-casting (HPDC) AZ91 tensile specimens were used to investigate characteristics of gas pores and their effects on mechanical properties of HPDC AZ91 magnesium (Mg) alloy. Combining the stereoscopic morphology of gas pores obtained from a three-dimensional (3D) reconstruction technique with the experimental data from uniaxial tensile testing, we worked on finite element simulation to find the relationship between gas pores and the mechanical properties of HPDC AZ91 Mg alloy. Results indicate that the 2D metallography images have one-sidedness. Moreover, gas pores >100 µm in the center region have a remarkable negative influence on the ultimate tensile strength (UTS) and elongation. With an increase in the size of large gas pores in the center region, the UTS and elongation of the material decreases. In addition, the distribution of gas pores in the specimens and the areal fraction of gas pores >100 µm on cross sections can also affect the UTS and elongation to some extent.

  10. A novel histological examination with dynamic three-dimensional reconstruction from multiple immunohistochemically stained sections of a PD-L1-positive colon cancer.

    Science.gov (United States)

    Korehisa, Shotaro; Ikeda, Tetsuo; Okano, Shinji; Saeki, Hiroshi; Oki, Eiji; Oda, Yoshinao; Hashizume, Makoto; Maehara, Yoshihiko

    2018-03-01

    Programmed cell death-ligand 1 (PD-L1) expression is observed in patients with microsatellite instability-high (MSI-H) colon cancer, which is susceptible to immune checkpoint blockade. The aim of this study was to investigate the interrelationship between PD-L1-positive cells and cytotoxic T cells, lymphatic vessels and vascular endothelium by using histological examination with the three-dimensional (3D) reconstruction of a PD-L1-positive colon cancer. Serial sections of MSI-H colon cancer tissue were stained with haematoxylin and eosin (H&E) and Masson trichrome stains; immunohistochemical analysis of PD-L1, CD8, D2-40 and CD31 was performed. Several 3D models of MSI-H colon cancer were reconstructed with a 3D data visualisation system. Moreover, 18 serial sections were stained with PD-L1, cytokeratin AE1/AE3, CD45, CD31, CD68 and H&E in the same case to confirm that PD-L1 was expressed on tumour cells, CD31-positive cells and macrophages in the invasive frontal region. Notably, there was a peak in the expression of PD-L1 and CD31 in the invasive frontal region. D2-40-positive cells were abundant in the overall tumour stroma, and CD8-positive cells infiltrated the tumour parenchyma. PD-L1 was expressed on tumour cells in the parenchyma and other cells in the stroma. Additional staining of 18 consecutive sections revealed that the other cells were CD68-positive and CD45-positive macrophages and CD31-positive proliferating vascular endothelial cells. We confirmed that PD-L1 was highly expressed in the invasive frontal region in 3D models of MSI-H colon cancer tissue. This method can be useful for accurately evaluating the localisation of immune checkpoint molecules. © 2017 John Wiley & Sons Ltd.

  11. Monitoring the Excavation Damaged Zone in Opalinus clay by three dimensional reconstruction of the electrical resistivity in the Mont Terri gallery G-04

    Science.gov (United States)

    Lesparre, N.; Adler, A.; Nicollin, F.; Gibert, D.; Nussbaum, C.

    2012-04-01

    The characteristics of opalinus clay have been studied in the last years for its capacity to retain radionuclide transport as a low permeable rock. This formation presents thereby suitable properties for hosting repository sites of radioactive waste. The Mont Terri underground rock laboratory (Switzerland) has been excavated in opalinus clay layer in order to develop experiences improving the knowledge on the physico-chemical properties of the rock. The study of electrical properties furnishes information on the rock structure, its anisotropy and the changes of these properties with time (Nicollin et al., 2010 ; Thovert et al., 2011). Here the three dimensional reconstruction of the electrical resistivity aims at monitoring the temporal evolution of the excavation damaged zone. Three rings of electrodes have been set-up around the gallery and voltage is measured between two electrodes while a current is injected between two others (Gibert et al., 2006). Measurements have been achieved from July 2004 until April 2008 before, during and after the excavation of the gallery 04. In this study we develop a computational approach to reconstruct three dimensional images of the resistivity in the vicinity of the electrodes. A finite element model is used to represent the complex geometry of the gallery. The measurements inferred from a given resistivity distribution are estimated using the software EIDORS (Adler and Lionheart, 2006), this constitutes the forward problem. The reconstruction of the media resistivity is then implemented by fitting the estimated to the measured data, via the resolution of an inverse problem. The parameters of this inverse problem are defined by mapping the forward problem elements into a coarser mesh. This allows to reduce drastically the number of unknowns and so increases the robustness of the inversion. The inversion is executed with the conjugate gradient method regularised by an analysis of the Jacobian singular values. The results show an

  12. Three-dimensional reconstructions for asymptomatic and cerebral palsy children's lower limbs using a biplanar X-ray system: A feasibility study

    Energy Technology Data Exchange (ETDEWEB)

    Assi, Ayman, E-mail: ayman.assi@gmail.com [Laboratoire de Biomécanique, Arts et Métiers ParisTech, Paris (France); Laboratory of Biomechanics, Faculty of Medicine, University of Saint-Joseph, Beirut (Lebanon); Gait and Motion Analysis Lab, SESOBEL, Beirut (Lebanon); Chaibi, Yasmina, E-mail: yasmina.chaibi@gmail.com [Laboratoire de Biomécanique, Arts et Métiers ParisTech, Paris (France); Presedo, Ana, E-mail: a.presedo@gmail.com [Laboratoire de Biomécanique, Arts et Métiers ParisTech, Paris (France); Hôpital Robert Debré, Paris (France); Dubousset, Jean, E-mail: jean.dubousset@wanadoo.fr [Laboratoire de Biomécanique, Arts et Métiers ParisTech, Paris (France); Ghanem, Ismat, E-mail: ghanem.i@dm.net.lb [Laboratory of Biomechanics, Faculty of Medicine, University of Saint-Joseph, Beirut (Lebanon); Gait and Motion Analysis Lab, SESOBEL, Beirut (Lebanon); Hôpital Hôtel Dieu de France, Beirut (Lebanon); Skalli, Wafa, E-mail: wafa.skalli@ensam.eu [Laboratoire de Biomécanique, Arts et Métiers ParisTech, Paris (France)

    2013-12-01

    The aim of this study is to explore the feasibility of 3D subject-specific skeletal reconstructions of lower limb in children using stereoradiography, and to assess uncertainty of clinical and anatomical parameters for children with cerebral palsy and for healthy children. The stereoradiography technique, using the EOS{sup ®} system (Eos-imaging{sup ®}), is based on the acquisition of two simultaneous digital anteroposterior and lateral X-rays, from head to feet in standing position and at low radiation dose. This technique allows subject-specific skeletal 3D reconstructions. Five children with cerebral palsy (CP) and 5 typically developing children (TD) were included in the study. Two operators performed the lower limb reconstructions twice. Tridimensional reconstructions were feasible for children over the age of 5 years. The study of reproducibility of anatomical parameters defining skeletal alignment showed uncertainties under 3° for the neck shaft angle, the femoral mechanical angle, and for the femoral and tibial torsions. The maximum degree of uncertainty was obtained for the femoral tibial rotation (4° for healthy children and 3.5° for children with CP)

  13. Three-dimensional reconstructions for asymptomatic and cerebral palsy children's lower limbs using a biplanar X-ray system: A feasibility study

    International Nuclear Information System (INIS)

    Assi, Ayman; Chaibi, Yasmina; Presedo, Ana; Dubousset, Jean; Ghanem, Ismat; Skalli, Wafa

    2013-01-01

    The aim of this study is to explore the feasibility of 3D subject-specific skeletal reconstructions of lower limb in children using stereoradiography, and to assess uncertainty of clinical and anatomical parameters for children with cerebral palsy and for healthy children. The stereoradiography technique, using the EOS ® system (Eos-imaging ® ), is based on the acquisition of two simultaneous digital anteroposterior and lateral X-rays, from head to feet in standing position and at low radiation dose. This technique allows subject-specific skeletal 3D reconstructions. Five children with cerebral palsy (CP) and 5 typically developing children (TD) were included in the study. Two operators performed the lower limb reconstructions twice. Tridimensional reconstructions were feasible for children over the age of 5 years. The study of reproducibility of anatomical parameters defining skeletal alignment showed uncertainties under 3° for the neck shaft angle, the femoral mechanical angle, and for the femoral and tibial torsions. The maximum degree of uncertainty was obtained for the femoral tibial rotation (4° for healthy children and 3.5° for children with CP)

  14. SU-E-J-100: Reconstruction of Prompt Gamma Ray Three Dimensional SPECT Image From Boron Neutron Capture Therapy(BNCT)

    International Nuclear Information System (INIS)

    Yoon, D; Jung, J; Suh, T

    2014-01-01

    Purpose: Purpose of paper is to confirm the feasibility of acquisition of three dimensional single photon emission computed tomography (SPECT) image from boron neutron capture therapy (BNCT) using Monte Carlo simulation. Methods: In case of simulation, the pixelated SPECT detector, collimator and phantom were simulated using Monte Carlo n particle extended (MCNPX) simulation tool. A thermal neutron source (<1 eV) was used to react with the boron uptake region (BUR) in the phantom. Each geometry had a spherical pattern, and three different BURs (A, B and C region, density: 2.08 g/cm3) were located in the middle of the brain phantom. The data from 128 projections for each sorting process were used to achieve image reconstruction. The ordered subset expectation maximization (OSEM) reconstruction algorithm was used to obtain a tomographic image with eight subsets and five iterations. The receiver operating characteristic (ROC) curve analysis was used to evaluate the geometric accuracy of reconstructed image. Results: The OSEM image was compared with the original phantom pattern image. The area under the curve (AUC) was calculated as the gross area under each ROC curve. The three calculated AUC values were 0.738 (A region), 0.623 (B region), and 0.817 (C region). The differences between length of centers of two boron regions and distance of maximum count points were 0.3 cm, 1.6 cm and 1.4 cm. Conclusion: The possibility of extracting a 3D BNCT SPECT image was confirmed using the Monte Carlo simulation and OSEM algorithm. The prospects for obtaining an actual BNCT SPECT image were estimated from the quality of the simulated image and the simulation conditions. When multiple tumor region should be treated using the BNCT, a reasonable model to determine how many useful images can be obtained from the SPECT could be provided to the BNCT facilities. This research was supported by the Leading Foreign Research Institute Recruitment Program through the National Research

  15. Three-dimensional digital rotation angiography for embolization therapy of uterine leiomyomas: first results; Dreidimensionale digitale Rotationsangiographie in der Embolisationstherapie von Uterusmyomen: Erste Erfahrungen

    Energy Technology Data Exchange (ETDEWEB)

    Bucek, R.A.; Reiter, M.; Dirisamer, A.; Kettenbach, J.; Lammer, J. [Universitaetsklinik fuer Radiodiagnostik, Abt. fuer Angiographie und interventionelle Radiologie, AKH Wien (Austria)

    2004-07-01

    Purpose: To evaluate three-dimensional rotational digital subtraction angiography (3D-RDSA) in the embolization of the uterine artery in the treatment of symptomatic uterine leiomyomas (fibroids). Materials and Methods: Eight women with complex pelvic vessel anatomy caused by large fibroids were embolized using 3D-RDSA. The raw data were sent to an external workstation, and video files with a resolution of one image/3 and a scan range of 180 in a surface-shaded display mode were produced. The primary goal was to assess an image intensifier angulation for the optimal visualization of the origin of the uterine artery. In addition, the intervention parameters were compared with those of 48 patients with standard angiography. Results: The analysis revealed no single angulation that can be recommended for standard angiography. No statistical differences were found between both groups concerning fluoroscopy time, dosage area product and amount of administered contrast medium (p > 0.05). Conclusion: It can be stated that 3D-RDSA is a feasible method that facilitates the catheterization of the uterine artery even in patients with complex pelvic vessel anatomy, with the potential to reduce the radiation exposure and the amount of administered contrast medium in future embolization therapy of symptomatic uterine fibroids. (orig.) [German] Ziel: Evaluierung der dreidimensionalen digitalen Rotationsangiographie (3-D-RDSA) in der Embolisation der Arteria uterina bei Patientinnen mit symptomatischen Leiomyomen des Uterus. Material und Methoden: 8 Frauen mit komplexer Beckengefaessanatomie aufgrund von ausgedehnten Myomen wurden mit Hilfe der 3-D-RDSA embolisiert, aus den Rohdaten der Rotationsangiographie wurden in einer externen Auswertestation Videos mit einer Aufloesung von einem Bild/3 und einem Scanbereich von 180 in Surface-Shaded-Display-Darstellung produziert. Unser erstes Ziel war die Evaluierung eines optimalen Einstellwinkels zur Darstellung des Abganges der Arteria

  16. A semi-experimental nodal synthesis method for the on-line reconstruction of three-dimensional neutron flux-shapes and reactivity

    International Nuclear Information System (INIS)

    Jacqmin, R.P.

    1991-01-01

    The safety and optimal performance of large, commercial, light-water reactors require the knowledge at all time of the neutron-flux distribution in the core. In principle, this information can be obtained by solving the time-dependent neutron diffusion equations. However, this approach is complicated and very expensive. Sufficiently accurate, real-time calculations (time scale of approximately one second) are not yet possible on desktop computers, even with fast-running, nodal kinetics codes. A semi-experimental, nodal synthesis method which avoids the solution of the time-dependent, neutron diffusion equations is described. The essential idea of this method is to approximate instantaneous nodal group-fluxes by a linear combination of K, precomputed, three-dimensional, static expansion-functions. The time-dependent coefficients of the combination are found from the requirement that the reconstructed flux-distribution agree in a least-squares sense with the readings of J (≥K) fixed, prompt-responding neutron-detectors. Possible numerical difficulties with the least-squares solution of the ill-conditioned, J-by-K system of equations are brought under complete control by the use of a singular-value-decomposition technique. This procedure amounts to the rearrangement of the original, linear combination of K expansion functions into an equivalent more convenient, linear combination of R (≤K) orthogonalized ''modes'' of decreasing magnitude. Exceedingly small modes are zeroed to eliminate any risk of roundoff-error amplification, and to assure consistency with the limited accuracy of the data. Additional modes are zeroed when it is desirable to limit the sensitivity of the results to measurement noise

  17. A semi-experimental nodal synthesis method for the on-line reconstruction of three-dimensional neutron flux-shapes and reactivity. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Jacqmin, Robert P. [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)

    1991-12-10

    The safety and optimal performance of large, commercial, light-water reactors require the knowledge at all time of the neutron-flux distribution in the core. In principle, this information can be obtained by solving the time-dependent neutron diffusion equations. However, this approach is complicated and very expensive. Sufficiently accurate, real-time calculations (time scale of approximately one second) are not yet possible on desktop computers, even with fast-running, nodal kinetics codes. A semi-experimental, nodal synthesis method which avoids the solution of the time-dependent, neutron diffusion equations is described. The essential idea of this method is to approximate instantaneous nodal group-fluxes by a linear combination of K, precomputed, three-dimensional, static expansion-functions. The time-dependent coefficients of the combination are found from the requirement that the reconstructed flux-distribution agree in a least-squares sense with the readings of J (≥K) fixed, prompt-responding neutron-detectors. Possible numerical difficulties with the least-squares solution of the ill-conditioned, J-by-K system of equations are brought under complete control by the use of a singular-value-decomposition technique. This procedure amounts to the rearrangement of the original, linear combination of K expansion functions into an equivalent more convenient, linear combination of R (≤K) orthogonalized ``modes`` of decreasing magnitude. Exceedingly small modes are zeroed to eliminate any risk of roundoff-error amplification, and to assure consistency with the limited accuracy of the data. Additional modes are zeroed when it is desirable to limit the sensitivity of the results to measurement noise.

  18. A semi-experimental nodal synthesis method for the on-line reconstruction of three-dimensional neutron flux-shapes and reactivity

    Energy Technology Data Exchange (ETDEWEB)

    Jacqmin, R.P.

    1991-12-10

    The safety and optimal performance of large, commercial, light-water reactors require the knowledge at all time of the neutron-flux distribution in the core. In principle, this information can be obtained by solving the time-dependent neutron diffusion equations. However, this approach is complicated and very expensive. Sufficiently accurate, real-time calculations (time scale of approximately one second) are not yet possible on desktop computers, even with fast-running, nodal kinetics codes. A semi-experimental, nodal synthesis method which avoids the solution of the time-dependent, neutron diffusion equations is described. The essential idea of this method is to approximate instantaneous nodal group-fluxes by a linear combination of K, precomputed, three-dimensional, static expansion-functions. The time-dependent coefficients of the combination are found from the requirement that the reconstructed flux-distribution agree in a least-squares sense with the readings of J ({ge}K) fixed, prompt-responding neutron-detectors. Possible numerical difficulties with the least-squares solution of the ill-conditioned, J-by-K system of equations are brought under complete control by the use of a singular-value-decomposition technique. This procedure amounts to the rearrangement of the original, linear combination of K expansion functions into an equivalent more convenient, linear combination of R ({le}K) orthogonalized modes'' of decreasing magnitude. Exceedingly small modes are zeroed to eliminate any risk of roundoff-error amplification, and to assure consistency with the limited accuracy of the data. Additional modes are zeroed when it is desirable to limit the sensitivity of the results to measurement noise.

  19. Three-dimensional neuroimaging

    International Nuclear Information System (INIS)

    Toga, A.W.

    1990-01-01

    This book reports on new neuroimaging technologies that are revolutionizing the study of the brain be enabling investigators to visualize its structure and entire pattern of functional activity in three dimensions. The book provides a theoretical and practical explanation of the new science of creating three-dimensional computer images of the brain. The coverage includes a review of the technology and methodology of neuroimaging, the instrumentation and procedures, issues of quantification, analytic protocols, and descriptions of neuroimaging systems. Examples are given to illustrate the use of three-dimensional enuroimaging to quantitate spatial measurements, perform analysis of autoradiographic and histological studies, and study the relationship between brain structure and function

  20. Three-dimensional imaging utilizing energy discrimination

    International Nuclear Information System (INIS)

    Gunter, D.L.; Hoffman, K.R.; Beck, R.N.

    1990-01-01

    An algorithm is proposed for three-dimensional image reconstruction in nuclear medicine which uses scattered radiation rather than multiple projected images to determine the source depth within the body. Images taken from numerous energy windows are combined to construct the source distribution in the body. The gamma-ray camera is not moved during the imaging process. Experiments with both Tc-99m and Ga-67 demonstrate that two channels of depth information can be extracted from the low energy images produced by scattered radiation. By combining this technique with standard SPECT reconstruction using multiple projections the authors anticipate much improved spatial resolution in the overall three-dimensional reconstruction

  1. Three-dimensional reconstruction of the embryonic pancreas in the grass snake Natrix natrix L. (Lepidosauria, Serpentes) based on histological studies.

    Science.gov (United States)

    Kowalska, Magdalena; Hermyt, Mateusz; Rupik, Weronika

    2017-04-01

    The aim of this study was to evaluate two research hypotheses: H 0 -the embryonic pancreas in grass snakes develops in the same manner as in all previously investigated amniotes (from three buds) and its topographical localization within the adult body has no relation to its development; H 1 -the pancreas develops in a different manner and is related to the different topography of internal organs in snakes. For the evaluation of these hypotheses we used histological methods and three-dimensional (3D) reconstructions of the position of the pancreatic buds and surrounding organs at particular developmental stages and of the final position and shape of the pancreatic gland. Our results indicate that the pancreas primordium in the grass snake is formed by only two buds - a dorsal and a ventral one - that are not connected until the end of stage II. This differs from the majority of vertebrates investigated so far. The gall bladder of the grass snake embryos is connected with the liver only by a thin cystic duct, which also differs from many other vertebrates. Our histological study also indicates a different distribution of the endocrine cells in the embryonic pancreas of the grass snake because the first endocrine cells appeared in the dorsal part of the pancreas in a region located close to the spleen. During the entire developmental period no evidence of these cells was found in the ventral part of the pancreas. The endocrine cells form elongated, large and irregular-shaped islets. They can also form structures resembling "inverted acini". Such an arrangement is characteristic of snakes only. The differentiating pancreas penetrates the ventral part of the developing spleen and divides it into three separate parts at developmental stage IX. This is unique among vertebrates. At the end of the embryonic development (stage XI), the pancreas, the spleen and the gall bladder are located in close proximity and form the so-called triad. Our results suggest that the

  2. A complete three-dimensional reconstruction of the myoanatomy of Loricifera: comparative morphology of an adult and a Higgins larva stage.

    Science.gov (United States)

    Neves, Ricardo C; Bailly, Xavier; Leasi, Francesca; Reichert, Heinrich; Sørensen, Martin V; Kristensen, Reinhardt M

    2013-04-15

    Loricifera is a group of small, marine animals, with undetermined phylogenetic relationships within Ecdysozoa (molting protostome animals). Despite their well-known external morphology, data on the internal anatomy of loriciferans are still incomplete. Aiming to increase the knowledge of this enigmatic phylum, we reconstruct for the first time the three-dimensional myoanatomy of loriciferans. Adult Nanaloricus sp. and the Higgins larva of Armorloricus elegans were investigated with cytochemical labeling techniques and CLSM. We discuss our findings with reference to other loriciferan species and recently established phylogenies. The somatic musculature of both adult and larval stages is very complex and includes several muscles arranged in three orientations: circular, transverse and longitudinal. In adult Nanaloricus sp., the introvert is characterized by a net-like muscular arrangement, which is composed of five thin circular fibers crossed by several (up to 30) thin longitudinal fibers with bifurcated anterior ends. Two sets of muscles surround the pre-pharyngeal armature: 6 buccal tube retractors arranged 3 × 2 in a conical shaped structure, and 8 mouth cone retractors. Additionally, a thick, circular muscle marks the neck region and a putative anal sphincter is the posteriormost myoanatomical feature. In the Higgins larva of A. elegans, two circular muscles are distinguished anteriorly in the introvert: a dorsal semicircular fiber and a thin ring muscle. The posteriormost region of the body is characterized by an anal sphincter and a triangular muscle. Based on the currently available knowledge, the myoanatomical bodyplan of adult loriciferans includes: (i) 8 mouth cone retractors, (ii) a pharynx bulb composed of transversal fibers arranged radially, (iii) circular muscles of the head and neck, (iv) internal muscles of the spinoscalids, (v) longitudinal muscles spanning all body regions, and (vi) transverse (circular) muscles in the abdomen. Concerning the

  3. Development of a High-Order Navier-Stokes Solver Using Flux Reconstruction to Simulate Three-Dimensional Vortex Structures in a Curved Artery Model

    Science.gov (United States)

    Cox, Christopher

    Low-order numerical methods are widespread in academic solvers and ubiquitous in industrial solvers due to their robustness and usability. High-order methods are less robust and more complicated to implement; however, they exhibit low numerical dissipation and have the potential to improve the accuracy of flow simulations at a lower computational cost when compared to low-order methods. This motivates our development of a high-order compact method using Huynh's flux reconstruction scheme for solving unsteady incompressible flow on unstructured grids. We use Chorin's classic artificial compressibility formulation with dual time stepping to solve unsteady flow problems. In 2D, an implicit non-linear lower-upper symmetric Gauss-Seidel scheme with backward Euler discretization is used to efficiently march the solution in pseudo time, while a second-order backward Euler discretization is used to march in physical time. We verify and validate implementation of the high-order method coupled with our implicit time stepping scheme using both steady and unsteady incompressible flow problems. The current implicit time stepping scheme is proven effective in satisfying the divergence-free constraint on the velocity field in the artificial compressibility formulation. The high-order solver is extended to 3D and parallelized using MPI. Due to its simplicity, time marching for 3D problems is done explicitly. The feasibility of using the current implicit time stepping scheme for large scale three-dimensional problems with high-order polynomial basis still remains to be seen. We directly use the aforementioned numerical solver to simulate pulsatile flow of a Newtonian blood-analog fluid through a rigid 180-degree curved artery model. One of the most physiologically relevant forces within the cardiovascular system is the wall shear stress. This force is important because atherosclerotic regions are strongly correlated with curvature and branching in the human vasculature, where the

  4. Visibility-enhanced reconstruction of three-dimensional objects under a heavily scattering medium through combined use of intermediate view reconstruction, multipixel extraction, and histogram equalization methods in the conventional integral imaging system.

    Science.gov (United States)

    Zhang, Miao; Piao, Yongri; Kim, Eun-Soo

    2011-10-01

    In this paper, we propose an effective approach for reconstructing visibility-enhanced three-dimensional (3D) objects under the heavily scattering medium of dense fog in the conventional integral imaging system through the combined use of the intermediate view reconstruction (IVR), multipixel extraction (MPE), and histogram equalization (HE) methods. In the proposed system, the limited number of elemental images (EIs) picked up from the 3D objects under the dense fog is increased by as many as required by using the IVR technique. The increased number of EIs is transformed into the subimages (SIs) in which the resolution of the transformed SIs has been also improved as much as possible with the MPE method. Subsequently, by using the HE algorithm, the histogram of the resolution-enhanced SIs is uniformly redistributed over the entire range of discrete pixel levels of the image in a way that the subimage contrast can be much enhanced. Then, these equalized SIs are converted back into the newly modified EIs, and consequently a visibility-enhanced 3D object image can be reconstructed. Successful experimental results with the test object confirmed the feasibility of the proposed method.

  5. Three-dimensional numerical simulation of a continuously rotating detonation in the annular combustion chamber with a wide gap and separate delivery of fuel and oxidizer

    Science.gov (United States)

    Frolov, S. M.; Dubrovskii, A. V.; Ivanov, V. S.

    2016-07-01

    The possibility of integrating the Continuous Detonation Chamber (CDC) in a gas turbine engine (GTE) is demonstrated by means of three-dimensional (3D) numerical simulations, i. e., the feasibility of the operation process in the annular combustion chamber with a wide gap and with separate feeding of fuel (hydrogen) and oxidizer (air) is proved computationally. The CDC with an upstream isolator damping pressure disturbances propagating towards the compressor is shown to exhibit a gain in the total pressure of 15% as compared with the same combustion chamber operating in the deflagration mode.

  6. Three dimensional system integration

    CERN Document Server

    Papanikolaou, Antonis; Radojcic, Riko

    2010-01-01

    Three-dimensional (3D) integrated circuit (IC) stacking is the next big step in electronic system integration. It enables packing more functionality, as well as integration of heterogeneous materials, devices, and signals, in the same space (volume). This results in consumer electronics (e.g., mobile, handheld devices) which can run more powerful applications, such as full-length movies and 3D games, with longer battery life. This technology is so promising that it is expected to be a mainstream technology a few years from now, less than 10-15 years from its original conception. To achieve thi

  7. Three-dimensional metamaterials

    Science.gov (United States)

    Burckel, David Bruce [Albuquerque, NM

    2012-06-12

    A fabrication method is capable of creating canonical metamaterial structures arrayed in a three-dimensional geometry. The method uses a membrane suspended over a cavity with predefined pattern as a directional evaporation mask. Metallic and/or dielectric material can be evaporated at high vacuum through the patterned membrane to deposit resonator structures on the interior walls of the cavity, thereby providing a unit cell of micron-scale dimension. The method can produce volumetric metamaterial structures comprising layers of such unit cells of resonator structures.

  8. Three-Dimensional Flows

    CERN Document Server

    Araujo, Vitor; Viana, Marcelo

    2010-01-01

    In this book, the authors present the elements of a general theory for flows on three-dimensional compact boundaryless manifolds, encompassing flows with equilibria accumulated by regular orbits. The book aims to provide a global perspective of this theory and make it easier for the reader to digest the growing literature on this subject. This is not the first book on the subject of dynamical systems, but there are distinct aspects which together make this book unique. Firstly, this book treats mostly continuous time dynamical systems, instead of its discrete counterpart, exhaustively treated

  9. Determination of the Three-Dimensional Rate of Cancer Cell Rotation in an Optically-Induced Electrokinetics Chip Using an Optical Flow Algorithm

    Directory of Open Access Journals (Sweden)

    Yuliang Zhao

    2018-03-01

    Full Text Available Our group has reported that Melan-A cells and lymphocytes undergo self-rotation in a homogeneous AC electric field, and found that the rotation velocity of these cells is a key indicator to characterize their physical properties. However, the determination of the rotation properties of a cell by human eyes is both gruesome and time consuming, and not always accurate. In this paper, a method is presented to more accurately determine the 3D cell rotation velocity and axis from a 2D image sequence captured by a single camera. Using the optical flow method, we obtained the 2D motion field data from the image sequence and back-project it onto a 3D sphere model, and then the rotation axis and velocity of the cell were calculated. After testing the algorithm on animated image sequences, experiments were also performed on image sequences of real rotating cells. All of these results indicate that this method is accurate, practical, and useful. Furthermore, the method presented there can also be used to determine the 3D rotation velocity of other types of spherical objects that are commonly used in microfluidic applications, such as beads and microparticles.

  10. Application of three-dimensional computerised tomography reconstruction and image processing technology in individual operation design of developmental dysplasia of the hip patients.

    Science.gov (United States)

    Xuyi, Wang; Jianping, Peng; Junfeng, Zhu; Chao, Shen; Yimin, Cui; Xiaodong, Chen

    2016-02-01

    Acetabular coverage deficiency displays individual difference among patients with developmental dysplasia of the hip (DDH). Therefore, the correct direction and degree of the acetabular fragment is patient-specific during Bernese periacetabular osteotomy (PAO). This paper introduces a feasible method using 3D computed tomography (CT) and computer image processing technology for customised surgical planning. CT data of 96 hips in 60 DDH patients (male 15, female 45; average age/range 30 ± 8/14-49 years) and 53 normal hips (male 13, female 37; average age/range 52 ± 13/16-69 years) were reconstructed using commercially available software Mimics and Imageware. Geometric parameters of each hip were measured in relation to the anterior pelvic plane after correcting for pelvic tilt and rotation. Deficiency types and degrees of acetabular dysplasia in patients with DDH were determined by comparison with normal hips, and improvement in femoral-head coverage was analysed again after virtual PAO. A customised surgery programme for each DDH patient was designed and provided the reference for the actual operation. We produced a 3D pelvic model using image processing software, doing precise measurement and with close approximation to the actual PAO. Lateral centre-edge angle (LCEA), anterior centre-edge angle (ACEA), acetabular anteversion angle (AAVA), anterior acetabular sector angle (AASA) and posterior acetabular sector angle (PASA) of normal hips in the control group were 35.128 ± 6.337, 57.052 ± 6.853, 19.215 ± 5.504, 61.537 ± 7.291 and 99.434 ± 8.372°, respectively. Angles of hips with DDH before surgery were 11.46 ± 11.19, 35.79 ± 13.75, 22.77 ± 6.13, 43.58 ± 9.15 and 88.46 ± 8.24, which were corrected to 33.81 ± 2.36, 55.38 ± 2.09, 20.16 ± 2.18, 58.29 ± 7.60, and 4.71 ± 7.75°, respectively, after surgery. After virtual Bernese PAO, LCEA, ACEA, AAVA, AASA and PASA were corrected

  11. Using flow information to support 3D vessel reconstruction from rotational angiography

    International Nuclear Information System (INIS)

    Waechter, Irina; Bredno, Joerg; Weese, Juergen; Barratt, Dean C.; Hawkes, David J.

    2008-01-01

    For the assessment of cerebrovascular diseases, it is beneficial to obtain three-dimensional (3D) morphologic and hemodynamic information about the vessel system. Rotational angiography is routinely used to image the 3D vascular geometry and we have shown previously that rotational subtraction angiography has the potential to also give quantitative information about blood flow. Flow information can be determined when the angiographic sequence shows inflow and possibly outflow of contrast agent. However, a standard volume reconstruction assumes that the vessel tree is uniformly filled with contrast agent during the whole acquisition. If this is not the case, the reconstruction exhibits artifacts. Here, we show how flow information can be used to support the reconstruction of the 3D vessel centerline and radii in this case. Our method uses the fast marching algorithm to determine the order in which voxels are analyzed. For every voxel, the rotational time intensity curve (R-TIC) is determined from the image intensities at the projection points of the current voxel. Next, the bolus arrival time of the contrast agent at the voxel is estimated from the R-TIC. Then, a measure of the intensity and duration of the enhancement is determined, from which a speed value is calculated that steers the propagation of the fast marching algorithm. The results of the fast marching algorithm are used to determine the 3D centerline by backtracking. The 3D radius is reconstructed from 2D radius estimates on the projection images. The proposed method was tested on computer simulated rotational angiography sequences with systematically varied x-ray acquisition, blood flow, and contrast agent injection parameters and on datasets from an experimental setup using an anthropomorphic cerebrovascular phantom. For the computer simulation, the mean absolute error of the 3D centerline and 3D radius estimation was 0.42 and 0.25 mm, respectively. For the experimental datasets, the mean absolute

  12. Simulation and experimental studies of three-dimensional (3D) image reconstruction from insufficient sampling data based on compressed-sensing theory for potential applications to dental cone-beam CT

    International Nuclear Information System (INIS)

    Je, U.K.; Lee, M.S.; Cho, H.S.; Hong, D.K.; Park, Y.O.; Park, C.K.; Cho, H.M.; Choi, S.I.; Woo, T.H.

    2015-01-01

    In practical applications of three-dimensional (3D) tomographic imaging, there are often challenges for image reconstruction from insufficient sampling data. In computed tomography (CT), for example, image reconstruction from sparse views and/or limited-angle (<360°) views would enable fast scanning with reduced imaging doses to the patient. In this study, we investigated and implemented a reconstruction algorithm based on the compressed-sensing (CS) theory, which exploits the sparseness of the gradient image with substantially high accuracy, for potential applications to low-dose, high-accurate dental cone-beam CT (CBCT). We performed systematic simulation works to investigate the image characteristics and also performed experimental works by applying the algorithm to a commercially-available dental CBCT system to demonstrate its effectiveness for image reconstruction in insufficient sampling problems. We successfully reconstructed CBCT images of superior accuracy from insufficient sampling data and evaluated the reconstruction quality quantitatively. Both simulation and experimental demonstrations of the CS-based reconstruction from insufficient data indicate that the CS-based algorithm can be applied directly to current dental CBCT systems for reducing the imaging doses and further improving the image quality

  13. Simulated annealing reconstruction and characterization of the three-dimensional microstructure of a LiCoO2 Lithium-ion battery cathode

    International Nuclear Information System (INIS)

    Wu, Wei; Jiang, Fangming

    2013-01-01

    We adapt the simulated annealing approach for reconstruction of the 3D microstructure of a LiCoO 2 cathode from a commercial Li-ion battery. The real size distribution curve of LiCoO 2 particles is applied to regulate the reconstruction process. By discretizing a 40 × 40 × 40 μm cathode volume with 8,000,000 numerical cubes, the cathode involving three individual phases: 1) LiCoO 2 as active material, 2) pores or electrolyte, and 3) additives (polyvinylidene fluoride + carbon black) is reconstructed. The microstructural statistical properties required in the reconstruction process are extracted from 2D focused ion beam/scanning electron microscopy images or obtained by analyzing the powder mixture used to make the cathode. Characterization of the reconstructed cathode gives important structural and transport properties including the two-point correlation functions, volume-specific surface area between phases, tortuosity and geometrical connectivity of individual phase. - Highlights: • Simulated annealing approach is adapted for 3D reconstruction of LiCoO 2 cathode. • Real size distribution of LiCoO 2 particles is applied in reconstruction process. • Reconstructed cathode accords with real one at important statistical properties. • Effective electrode-characterization approaches have been established. • Extensive characterization gives important structural properties, say, tortuosity

  14. Left ventricular rigid body rotation in a diffuse large B-cell lymphoma patient with cardiac involvement: A case from the three-dimensional speckle-tracking echocardiographic MAGYAR-Path Study.

    Science.gov (United States)

    Földeák, Dóra; Kalapos, Anita; Domsik, Péter; Sinkó, Mária; Szeleczki, Nóra; Bagdi, Enikő; Krenács, László; Forster, Tamás; Borbényi, Zita; Nemes, Attila

    2017-02-01

    Secondary myocardial involvement by diffuse large B-cell lymphoma is a rare occurrence. Left ventricular (LV) twist is considered an essential part of LV function. In normal circumstances LV twist results from the movement of two orthogonally oriented muscular bands of a helical myocardial structure with consequent clockwise rotation of the base and counterclockwise rotation of the apex. Three-dimensional (3D) speckle-tracking echocardiography (3DSTE) has been found to be feasible for non-invasive 3D quantification of LV wall motion and rotational mechanics. The present report aimed to assess LV twisting motion in a patient with diffuse large B-cell lymphoma with positron emission tomography/computer tomography-proven cardiac involvement by 3DSTE. During 3DSTE, reduction in some segmental radial, longitudinal, circumferential, area and 3D LV strains were found. Apical and basal LV rotations were found to be in the same counterclockwise direction, confirming near absence of LV twist - so-called rigid body rotation. Copyright © 2016 Sociedade Portuguesa de Cardiologia. Publicado por Elsevier España, S.L.U. All rights reserved.

  15. Three-dimensional volumetric display by inclined-plane scanning

    Science.gov (United States)

    Miyazaki, Daisuke; Eto, Takuma; Nishimura, Yasuhiro; Matsushita, Kenji

    2003-05-01

    A volumetric display system based on three-dimensional (3-D) scanning that uses an inclined two-dimensional (2-D) image is described. In the volumetric display system a 2-D display unit is placed obliquely in an imaging system into which a rotating mirror is inserted. When the mirror is rotated, the inclined 2-D image is moved laterally. A locus of the moving image can be observed by persistence of vision as a result of the high-speed rotation of the mirror. Inclined cross-sectional images of an object are displayed on the display unit in accordance with the position of the image plane to observe a 3-D image of the object by persistence of vision. Three-dimensional images formed by this display system satisfy all the criteria for stereoscopic vision. We constructed the volumetric display systems using a galvanometer mirror and a vector-scan display unit. In addition, we constructed a real-time 3-D measurement system based on a light section method. Measured 3-D images can be reconstructed in the 3-D display system in real time.

  16. Development of three dimensional solid modeler

    International Nuclear Information System (INIS)

    Zahoor, R.M.A.

    1999-01-01

    The work presented in this thesis is aimed at developing a three dimensional solid modeler employing computer graphics techniques using C-Language. Primitives have been generated, by combination of plane surfaces, for various basic geometrical shapes including cylinder, cube and cone. Back face removal technique for hidden surface removal has also been incorporated. Various transformation techniques such as scaling, translation, and rotation have been included for the object animation. Three dimensional solid modeler has been created by the union of two primitives to demonstrate the capabilities of the developed program. (author)

  17. Quantum control of molecular vibrational and rotational excitations in a homonuclear diatomic molecule: A full three-dimensional treatment with polarization forces

    Science.gov (United States)

    Ren, Qinghua; Balint-Kurti, Gabriel G.; Manby, Frederick R.; Artamonov, Maxim; Ho, Tak-San; Rabitz, Herschel

    2006-01-01

    The optimal control of the vibrational excitation of the hydrogen molecule [Balint-Kurti et al., J. Chem. Phys. 122, 084110 (2005)] utilizing polarization forces is extended to three dimensions. The polarizability of the molecule, to first and higher orders, is accounted for using explicit ab initio calculations of the molecular electronic energy in the presence of an electric field. Optimal control theory is then used to design infrared laser pulses that selectively excite the molecule to preselected vibrational-rotational states. The amplitude of the electric field of the optimized pulses is restricted so that there is no significant ionization during the process, and a new frequency sifting method is used to simplify the frequency spectrum of the pulse. The frequency spectra of the optimized laser pulses for processes involving rotational excitation are more complex than those relating to processes involving only vibrational excitation.

  18. Three dimensional energy profile:

    International Nuclear Information System (INIS)

    Kowsari, Reza; Zerriffi, Hisham

    2011-01-01

    The provision of adequate, reliable, and affordable energy has been considered as a cornerstone of development. More than one-third of the world's population has a very limited access to modern energy services and suffers from its various negative consequences. Researchers have been exploring various dimensions of household energy use in order to design strategies to provide secure access to modern energy services. However, despite more than three decades of effort, our understanding of household energy use patterns is very limited, particularly in the context of rural regions of the developing world. Through this paper, the past and the current trends in the field of energy analysis are investigated. The literature on rural energy and energy transition in developing world has been explored and the factors affecting households' decisions on energy use are listed. The and the factors affecting households' decisions on energy use are listed. The gaps identified in the literature on rural household energy analysis provide a basis for developing an alternative model that can create a more realistic view of household energy use. The three dimensional energy profile is presented as a new conceptual model for assessment of household energy use. This framework acts as a basis for building new theoretical and empirical models of rural household energy use. - Highlights: ► Reviews literature on household energy, energy transitions and decision-making in developing countries. ► Identifies gaps in rural household energy analysis and develops a new conceptual framework. ► The 3-d energy profile provides a holistic view of household energy system characteristics. ► Illustrates the use of the framework for understanding household energy transitions.

  19. Three-dimensional echocardiography

    International Nuclear Information System (INIS)

    Buck, Thomas

    2011-01-01

    Presents tips and tricks for beginners and experts Provides educational material for 3D training courses Features comprehensively illustrated cases Includes an accompanying DVD with video clips of all sample cases Three-dimensional echocardiography is the most recent fundamental advancement in echocardiography. Since real-time 3D echocardiography became commercially available in 2002, it has rapidly been accepted in echo labs worldwide. This book covers all clinically relevant aspects of this fascinating new technology, including a comprehensive explanation of its basic principles, practical aspects of clinical application, and detailed descriptions of specific uses in the broad spectrum of clinically important heart disease. The book was written by a group of well-recognized international experts in the field, who have not only been involved in the scientific and clinical evolution of 3D echocardiography since its inception but are also intensively involved in expert training courses. As a result, the clear focus of this book is on the practical application of 3D echocardiography in daily clinical routine with tips and tricks for both beginners and experts, accompanied by more than 150 case examples comprehensively illustrated in more than 800 images and more than 500 videos provided on a DVD. In addition to an in-depth review of the most recent literature on real-time 3D echocardiography, this book represents an invaluable reference work for beginners and expert users of 3D echocardiography. - Tips and tricks for beginners and experts - Educational material for 3D training courses - Comprehensively illustrated cases - DVD with video clips of all sample cases.

  20. SU-F-P-18: Development of the Technical Training System for Patient Set-Up Considering Rotational Correction in the Virtual Environment Using Three-Dimensional Computer Graphic Engine

    Energy Technology Data Exchange (ETDEWEB)

    Imura, K [Division of Quantum Radiation Science, Department of Health Science, Graduate School of Medical Science, Kyushu University, Fukuoka (Japan); Fujibuchi, T; Hirata, H [Department of Health Science, Graduate School of Medical Science, Kyushu University, Fukuoka (Japan); Kaneko, K [Innovation Center for Educational Resource, Kyushu University, Fukuoka (Japan); Hamada, E [Cancer Treatment Center, Tobata Kyoritsu Hospital, Kitakyushu (Japan)

    2016-06-15

    Purpose: Patient set-up skills in radiotherapy treatment room have a great influence on treatment effect for image guided radiotherapy. In this study, we have developed the training system for improving practical set-up skills considering rotational correction in the virtual environment away from the pressure of actual treatment room by using three-dimensional computer graphic (3DCG) engine. Methods: The treatment room for external beam radiotherapy was reproduced in the virtual environment by using 3DCG engine (Unity). The viewpoints to perform patient set-up in the virtual treatment room were arranged in both sides of the virtual operable treatment couch to assume actual performance by two clinical staffs. The position errors to mechanical isocenter considering alignment between skin marker and laser on the virtual patient model were displayed by utilizing numerical values expressed in SI units and the directions of arrow marks. The rotational errors calculated with a point on the virtual body axis as the center of each rotation axis for the virtual environment were corrected by adjusting rotational position of the body phantom wound the belt with gyroscope preparing on table in a real space. These rotational errors were evaluated by describing vector outer product operations and trigonometric functions in the script for patient set-up technique. Results: The viewpoints in the virtual environment allowed individual user to visually recognize the position discrepancy to mechanical isocenter until eliminating the positional errors of several millimeters. The rotational errors between the two points calculated with the center point could be efficiently corrected to display the minimum technique mathematically by utilizing the script. Conclusion: By utilizing the script to correct the rotational errors as well as accurate positional recognition for patient set-up technique, the training system developed for improving patient set-up skills enabled individual user to

  1. SU-F-P-18: Development of the Technical Training System for Patient Set-Up Considering Rotational Correction in the Virtual Environment Using Three-Dimensional Computer Graphic Engine

    International Nuclear Information System (INIS)

    Imura, K; Fujibuchi, T; Hirata, H; Kaneko, K; Hamada, E

    2016-01-01

    Purpose: Patient set-up skills in radiotherapy treatment room have a great influence on treatment effect for image guided radiotherapy. In this study, we have developed the training system for improving practical set-up skills considering rotational correction in the virtual environment away from the pressure of actual treatment room by using three-dimensional computer graphic (3DCG) engine. Methods: The treatment room for external beam radiotherapy was reproduced in the virtual environment by using 3DCG engine (Unity). The viewpoints to perform patient set-up in the virtual treatment room were arranged in both sides of the virtual operable treatment couch to assume actual performance by two clinical staffs. The position errors to mechanical isocenter considering alignment between skin marker and laser on the virtual patient model were displayed by utilizing numerical values expressed in SI units and the directions of arrow marks. The rotational errors calculated with a point on the virtual body axis as the center of each rotation axis for the virtual environment were corrected by adjusting rotational position of the body phantom wound the belt with gyroscope preparing on table in a real space. These rotational errors were evaluated by describing vector outer product operations and trigonometric functions in the script for patient set-up technique. Results: The viewpoints in the virtual environment allowed individual user to visually recognize the position discrepancy to mechanical isocenter until eliminating the positional errors of several millimeters. The rotational errors between the two points calculated with the center point could be efficiently corrected to display the minimum technique mathematically by utilizing the script. Conclusion: By utilizing the script to correct the rotational errors as well as accurate positional recognition for patient set-up technique, the training system developed for improving patient set-up skills enabled individual user to

  2. Classifying and assembling two-dimensional X-ray laser diffraction patterns of a single particle to reconstruct the three-dimensional diffraction intensity function: resolution limit due to the quantum noise

    International Nuclear Information System (INIS)

    Tokuhisa, Atsushi; Taka, Junichiro; Kono, Hidetoshi; Go, Nobuhiro

    2012-01-01

    A new algorithm is developed for reconstructing the high-resolution three-dimensional diffraction intensity function of a globular biological macromolecule from many quantum-noise-limited two-dimensional X-ray laser diffraction patterns, each for an unknown orientation. The structural resolution is expressed as a function of the incident X-ray intensity and quantities characterizing the target molecule. A new two-step algorithm is developed for reconstructing the three-dimensional diffraction intensity of a globular biological macromolecule from many experimentally measured quantum-noise-limited two-dimensional X-ray laser diffraction patterns, each for an unknown orientation. The first step is classification of the two-dimensional patterns into groups according to the similarity of direction of the incident X-rays with respect to the molecule and an averaging within each group to reduce the noise. The second step is detection of common intersecting circles between the signal-enhanced two-dimensional patterns to identify their mutual location in the three-dimensional wavenumber space. The newly developed algorithm enables one to detect a signal for classification in noisy experimental photon-count data with as low as ∼0.1 photons per effective pixel. The wavenumber of such a limiting pixel determines the attainable structural resolution. From this fact, the resolution limit due to the quantum noise attainable by this new method of analysis as well as two important experimental parameters, the number of two-dimensional patterns to be measured (the load for the detector) and the number of pairs of two-dimensional patterns to be analysed (the load for the computer), are derived as a function of the incident X-ray intensity and quantities characterizing the target molecule

  3. Comparison of three-dimensional isotropic and conventional MR arthrography with respect to the diagnosis of rotator cuff and labral lesions: Focus on isotropic fat-suppressed proton density and VIBE sequences

    International Nuclear Information System (INIS)

    Park, S.Y.; Lee, I.S.; Park, S.K.; Cheon, S.J.; Ahn, J.M.; Song, J.W.

    2014-01-01

    Aim: To compare the diagnostic accuracies of three-dimensional (3D) isotropic magnetic resonance arthrography (MRA) using fat-suppressed proton density (PD) or volume interpolated breath-hold examination (VIBE) sequences with that of conventional MRA for the diagnosis of rotator cuff and labral lesions. Materials and methods: Eighty-six patients who underwent arthroscopic surgery were included. 3D isotropic sequences were performed in the axial plane using fat-suppressed PD (group A) in 53 patients and using VIBE (group B) in 33 patients. Reformatted images were obtained corresponding to conventional images, and evaluated for the presence of labral and rotator cuff lesions using conventional and 3D isotropic sequences. The diagnostic performances of each sequence were determined using arthroscopic findings as the standard. Results: Good to excellent interobserver agreements were obtained for both 3D isotropic sequences for the evaluation of rotator cuff and labral lesions. Excellent agreement was found between two-dimensional (2D) and 3D isotropic MRA, except for supraspinatus tendon (SST) tears by both readers and for subscapularis tendon (SCT) tears by reader 2 in group B. 2D MRA and 3D isotropic sequences had high diagnostic performances for rotator and labral tears, and the difference between the two imaging methods was insignificant. Conclusions: The diagnostic performances of 3D isotropic VIBE and PD sequences were similar to those of 2D MRA

  4. Optimal C-arm angulation during transcatheter aortic valve replacement: Accuracy of a rotational C-arm computed tomography based three dimensional heart model.

    Science.gov (United States)

    Veulemans, Verena; Mollus, Sabine; Saalbach, Axel; Pietsch, Max; Hellhammer, Katharina; Zeus, Tobias; Westenfeld, Ralf; Weese, Jürgen; Kelm, Malte; Balzer, Jan

    2016-10-26

    To investigate the accuracy of a rotational C-arm CT-based 3D heart model to predict an optimal C-arm configuration during transcatheter aortic valve replacement (TAVR). Rotational C-arm CT (RCT) under rapid ventricular pacing was performed in 57 consecutive patients with severe aortic stenosis as part of the pre-procedural cardiac catheterization. With prototype software each RCT data set was segmented using a 3D heart model. From that the line of perpendicularity curve was obtained that generates a perpendicular view of the aortic annulus according to the right-cusp rule. To evaluate the accuracy of a model-based overlay we compared model- and expert-derived aortic root diameters. For all 57 patients in the RCT cohort diameter measurements were obtained from two independent operators and were compared to the model-based measurements. The inter-observer variability was measured to be in the range of 0°-12.96° of angular C-arm displacement for two independent operators. The model-to-operator agreement was 0°-13.82°. The model-based and expert measurements of aortic root diameters evaluated at the aortic annulus ( r = 0.79, P optimal C-arm configuration, potentially simplifying current clinical workflows before and during TAVR.

  5. From high symmetry to high resolution in biological electron microscopy: a commentary on Crowther (1971) 'Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs'.

    Science.gov (United States)

    Rosenthal, Peter B

    2015-04-19

    Elucidation of the structure of biological macromolecules and larger assemblies has been essential to understanding the roles they play in living processes. Methods for three-dimensional structure determination of biological assemblies from images recorded in the electron microscope were therefore a key development. In his paper published in Philosophical Transactions B in 1971, Crowther described new computational procedures applied to the first three-dimensional reconstruction of an icosahedral virus from images of virus particles preserved in negative stain. The method for determining the relative orientation of randomly oriented particles and combining their images for reconstruction exploited the high symmetry of the virus particle. Computational methods for image analysis have since been extended to include biological assemblies without symmetry. Further experimental advances, combined with image analysis, have led to the method of cryomicroscopy, which is now used by structural biologists to study the structure and dynamics of biological machines and assemblies in atomic detail. This commentary was written to celebrate the 350th anniversary of the journal Philosophical Transactions of the Royal Society.

  6. Three-dimensional finite element analysis of glass fiber and cast metal posts with different alloys for reconstruction of teeth without ferrule.

    Science.gov (United States)

    Verri, Fellippo Ramos; Okumura, Marlice Hayumi Theles; Lemos, Cleidiel Aparecido Araujo; Almeida, Daniel Augusto de Faria; de Souza Batista, Victor Eduardo; Cruz, Ronaldo Silva; Oliveira, Hiskell Francine Fernandes; Pellizzer, Eduardo Piza

    2017-11-01

    The aim of this study was to evaluate different materials for restoration of teeth without ferrule by three-dimensional (3D) finite element analysis (FEA). Five models simulating the maxillary central incisor and surrounding bone were simulated according to the type of post: glass fibre post (GFP) or cast metal post (CMP) with different alloys such as gold (Au), silver-palladium (AgPd), copper-aluminum (CuAl) and nickel-chromium (NiCr). Models were designed using Invesalius and Rhinoceros. FEAs were made using FEMAP and NeiNastran, with an applied axial force of 100 N and oblique occlusal load at 45°. Stress distribution among groups was analysed by two-way analysis of variance (ANOVA), followed by post-hoc Tukey's test. The GFP showed the best stress distribution in the post, followed by CMP with Au, AgPd, CuAl and NiCr alloys, respectively (p  .05). Under oblique load, the GFP generated the highest values of tension among the models, followed by the CMP with NiCr alloy than other models (p < .001). The use of GFP resulted in a lower stress concentration in the post, but increased stress in the tooth without ferrule. The CMP with NiCr alloy exhibited the highest stress distribution among other CMP. To avoid higher stress in teeth, alloys of Au, AgPd and CuAl, respectively, are recommended.

  7. An algorithm based on OmniView technology to reconstruct sagittal and coronal planes of the fetal brain from volume datasets acquired by three-dimensional ultrasound.

    Science.gov (United States)

    Rizzo, G; Capponi, A; Pietrolucci, M E; Capece, A; Aiello, E; Mammarella, S; Arduini, D

    2011-08-01

    To describe a novel algorithm, based on the new display technology 'OmniView', developed to visualize diagnostic sagittal and coronal planes of the fetal brain from volumes obtained by three-dimensional (3D) ultrasonography. We developed an algorithm to image standard neurosonographic planes by drawing dissecting lines through the axial transventricular view of 3D volume datasets acquired transabdominally. The algorithm was tested on 106 normal fetuses at 18-24 weeks of gestation and the visualization rates of brain diagnostic planes were evaluated by two independent reviewers. The algorithm was also applied to nine cases with proven brain defects. The two reviewers, using the algorithm on normal fetuses, found satisfactory images with visualization rates ranging between 71.7% and 96.2% for sagittal planes and between 76.4% and 90.6% for coronal planes. The agreement rate between the two reviewers, as expressed by Cohen's kappa coefficient, was > 0.93 for sagittal planes and > 0.89 for coronal planes. All nine abnormal volumes were identified by a single observer from among a series including normal brains, and eight of these nine cases were diagnosed correctly. This novel algorithm can be used to visualize standard sagittal and coronal planes in the fetal brain. This approach may simplify the examination of the fetal brain and reduce dependency of success on operator skill. Copyright © 2011 ISUOG. Published by John Wiley & Sons, Ltd.

  8. Quantitative assessment of retropulsion of the hip, excessive hip external rotation, and excessive lateral shift of the trunk over the unaffected side in hemiplegia using three-dimensional treadmill gait analysis.

    Science.gov (United States)

    Tanikawa, Hiroki; Ohtsuka, Kei; Mukaino, Masahiko; Inagaki, Keisuke; Matsuda, Fumihiro; Teranishi, Toshio; Kanada, Yoshikiyo; Kagaya, Hitoshi; Saitoh, Eiichi

    2016-10-01

    Gait assessment is important to determine the most effective strategy to regain gait function during stroke rehabilitation. To understand the mechanisms that cause abnormal gait patterns, it is useful to objectively identify and quantify the abnormal gait patterns. Objective assessment also helps evaluate the efficacy of treatments and can be used to provide suggestions for treatment. To evaluate the validity of quantitative indices for retropulsion of the hip, excessive hip external rotation, and excessive lateral shift of the trunk over the unaffected side in hemiplegic patients. Forty-six healthy control subjects and 112 hemiplegic patients participated. From the 112 patients, 50 patients were selected into each abnormal gait pattern with some overlap. Participants were instructed to walk on a treadmill and were recorded using a three-dimensional motion analysis system. An index to quantify each of the three abnormal gait patterns was calculated from the three-dimensional coordinate data. The index values of patients were compared with those of healthy subjects and with the results of observational gait assessment by three physical therapists with expertise in gait analysis. Strong correlation was observed between the index value and the median observational rating for all three abnormal gait patterns (-0.56 to -0.74). Most of the patients with an abnormal gait pattern had a higher index value than the healthy subjects. The proposed indices are useful for clinical gait analysis. Our results encourage a more detailed analysis of hemiplegic gait using a motion analysis system.

  9. A Novel Region-Growing Based Semi-Automatic Segmentation Protocol for Three-Dimensional Condylar Reconstruction Using Cone Beam Computed Tomography (CBCT)

    NARCIS (Netherlands)

    Xi, Tong; Schreurs, Ruud; Heerink, Wout J.; Berge, Stefaan J.; Maal, Thomas J. J.

    2014-01-01

    Objective: To present and validate a semi-automatic segmentation protocol to enable an accurate 3D reconstruction of the mandibular condyles using cone beam computed tomography (CBCT). Materials and Methods: Approval from the regional medical ethics review board was obtained for this study.

  10. A Novel Region-Growing Based Semi-Automatic Segmentation Protocol for Three-Dimensional Condylar Reconstruction Using Cone Beam Computed Tomography (CBCT)

    NARCIS (Netherlands)

    Xi, T.; Schreurs, R.; Heerink, W.J.; Berge, S.J.; Maal, T.J.

    2014-01-01

    OBJECTIVE: To present and validate a semi-automatic segmentation protocol to enable an accurate 3D reconstruction of the mandibular condyles using cone beam computed tomography (CBCT). MATERIALS AND METHODS: Approval from the regional medical ethics review board was obtained for this study.

  11. Fully three-dimensional reconstruction from data collected on concentric cubes in Fourier space: implementation and a sample application to MRI [magnetic resonance imaging

    International Nuclear Information System (INIS)

    Herman, G.T.; Roberts, D.; Axel, L.

    1992-01-01

    An algorithm is proposed for rapid and accurate reconstruction from data collected in Fourier space at points arranged on a grid of concentric cubes. The whole process has computational complexity of the same order as required for the 3D fast Fourier transform and so (for medically relevant sizes of the data set) it is faster than backprojection into the same size rectangular grid. The design of the algorithm ensures that no interpolations are needed, in contrast to methods involving backprojection with their unavoidable interpolations. As an application, a 3D data collection method for MRI has been designed which directly samples the Fourier transform of the object to be reconstructed on concentric cubes as needed for the algorithm. (author)

  12. Comparison of Generated Parallel Capillary Arrays to Three-Dimensional Reconstructed Capillary Networks in Modeling Oxygen Transport in Discrete Microvascular Volumes

    Science.gov (United States)

    Fraser, Graham M.; Goldman, Daniel; Ellis, Christopher G.

    2013-01-01

    Objective We compare Reconstructed Microvascular Networks (RMN) to Parallel Capillary Arrays (PCA) under several simulated physiological conditions to determine how the use of different vascular geometry affects oxygen transport solutions. Methods Three discrete networks were reconstructed from intravital video microscopy of rat skeletal muscle (84×168×342 μm, 70×157×268 μm and 65×240×571 μm) and hemodynamic measurements were made in individual capillaries. PCAs were created based on statistical measurements from RMNs. Blood flow and O2 transport models were applied and the resulting solutions for RMN and PCA models were compared under 4 conditions (rest, exercise, ischemia and hypoxia). Results Predicted tissue PO2 was consistently lower in all RMN simulations compared to the paired PCA. PO2 for 3D reconstructions at rest were 28.2±4.8, 28.1±3.5, and 33.0±4.5 mmHg for networks I, II, and III compared to the PCA mean values of 31.2±4.5, 30.6±3.4, and 33.8±4.6 mmHg. Simulated exercise yielded mean tissue PO2 in the RMN of 10.1±5.4, 12.6±5.7, and 19.7±5.7 mmHg compared to 15.3±7.3, 18.8±5.3, and 21.7±6.0 in PCA. Conclusions These findings suggest that volume matched PCA yield different results compared to reconstructed microvascular geometries when applied to O2 transport modeling; the predominant characteristic of this difference being an over estimate of mean tissue PO2. Despite this limitation, PCA models remain important for theoretical studies as they produce PO2 distributions with similar shape and parameter dependence as RMN. PMID:23841679

  13. A Three-Dimensional Skeletal Reconstruction of the Stem Amniote Orobates pabsti (Diadectidae: Analyses of Body Mass, Centre of Mass Position, and Joint Mobility.

    Directory of Open Access Journals (Sweden)

    John A Nyakatura

    Full Text Available Orobates pabsti, a basal diadectid from the lower Permian, is a key fossil for the understanding of early amniote evolution. Quantitative analysis of anatomical information suffers from fragmentation of fossil bones, plastic deformation due to diagenetic processes and fragile preservation within surrounding rock matrix, preventing further biomechanical investigation. Here we describe the steps taken to digitally reconstruct MNG 10181, the holotype specimen of Orobates pabsti, and subsequently use the digital reconstruction to assess body mass, position of the centre of mass in individual segments as well as the whole animal, and study joint mobility in the shoulder and hip joints. The shape of most fossil bone fragments could be recovered from micro-focus computed tomography scans. This also revealed structures that were hitherto hidden within the rock matrix. However, parts of the axial skeleton had to be modelled using relevant isolated bones from the same locality as templates. Based on the digital fossil, mass of MNG 10181 was estimated using a model of body shape that was varied within a plausible range to account for uncertainties of the dimension. In the mean estimate model the specimen had an estimated mass of circa 4 kg. Varying of the mass distribution amongst body segments further revealed that Orobates carried most of its weight on the hind limbs. Mostly unrestricted joint morphology further suggested that MNG 10181 was able to effectively generate propulsion with the pelvic limbs. The digital reconstruction is made available for future biomechanical studies.

  14. Accelerated algorithm for three-dimensional computer generated hologram based on the ray-tracing method

    Science.gov (United States)

    Xie, Z. W.; Zang, J. L.; Zhang, Y.

    2013-06-01

    An accelerated algorithm for three-dimensional computer generated holograms (CGHs) based on the ray-tracing method is proposed. The complex amplitude distribution from the center point of an object is calculated in advance and the field distributions of rest points on the hologram plane can be given by doing a small translation and an aberration to the pre-calculated field. A static two-dimensional car, a three-dimensional teapot, and a dynamic three-dimensional rotating teapot are reconstructed from CGHs calculated with the accelerated algorithm to prove its validity. The simulation results demonstrate that the accelerated algorithm is eight times faster than the conventional ray-tracing algorithm.

  15. The Three-Dimensional Sign.

    Science.gov (United States)

    Davis, Daniel R.

    1997-01-01

    Discusses the implications of the three-dimensional sign proposed by Harris (1990) for general linguistic theory and the philosophy of language. The article places the principal characteristics of the three-dimensional sign (contextuality, cotemporality, communicational relevance, and experiential grounding) against those of the two-dimensional…

  16. Three-dimensional reconstructed computed tomography-magnetic resonance fusion image-based preoperative planning for surgical procedures for spinal lipoma or tethered spinal cord after myelomeningocele repair. Technical note

    International Nuclear Information System (INIS)

    Bamba, Yohei; Nonaka, Masahiro; Nakajima, Shin; Yamasaki, Mami

    2011-01-01

    Surgical procedures for spinal lipoma or tethered spinal cord after myelomeningocele (MMC) repair are often difficult and complicated, because the anatomical structures can be deformed in complex and unpredictable ways. Imaging helps the surgeon understand the patient's spinal anatomy. Whereas two-dimensional images provide only limited information for surgical planning, three-dimensional (3D) reconstructed computed tomography (CT)-magnetic resonance (MR) fusion images produce clearer representations of the spinal regions. Here we describe simple and quick methods for obtaining 3D reconstructed CT-MR fusion images for preoperative planning of surgical procedures using the iPlan cranial (BrainLAB AG, Feldkirchen, Germany) neuronavigation software. 3D CT images of the vertebral bone were combined with heavily T 2 -weighted MR images of the spinal cord, lipoma, cerebrospinal fluid (CSF) space, and nerve root through a process of fusion, segmentation, and reconstruction of the 3D images. We also used our procedure called 'Image Overlay' to directly project the 3D reconstructed image onto the body surface using an light emitting diode (LED) projector. The final reconstructed 3D images took 10-30 minutes to obtain, and provided the surgeon with a representation of the individual pathological structures, so enabled the design of effective surgical plans, even in patients with bony deformity such as scoliosis. None of the 19 patients treated based on our 3D reconstruction method has had neurological complications, except for CSF leakage. This 3D reconstructed imaging method, combined with Image Overlay, improves the visual understanding of complicated surgical situations, and should improve surgical efficiency and outcome. (author)

  17. Evaluation of engraftment of superparamagnetic iron oxide-labeled mesenchymal stem cells using three-dimensional reconstruction of magnetic resonance imaging in photo thrombotic cerebral infarction models of rats

    Energy Technology Data Exchange (ETDEWEB)

    Shim, Jae Hyun; Kwak, Byung Kook; Jung, Ji Sung; Park, Se Rah [Chung-Ang University College of Medicine, Seoul (Korea, Republic of)

    2015-06-15

    To evaluate engraftment by visualizing the location of human bone marrow-derived mesenchymal stem cells (hBM-MSCs) three-dimensionally in photothrombotic cerebral infarction (PTCI) models of rats. Magnetic resonance imaging (MRI) of an agarose block containing superparamagnetic iron oxide (SPIO)-labeled hBM-MSCs was performed using a 3.0-T MRI, T2-(T2WI), T2{sup *}-(T2{sup *}WI), and susceptibility-weighted images (SWI). PTCI was induced in 6 rats, and 2.5 x 10(5) SPIO-labeled hBM-MSCs were infused through the ipsilateral internal carotid artery (ICA group) or tail vein (IV group). MRI was performed on days 1, 3, 7, and 14 after stem cell injection. Dark signal regions were confirmed using histology. Three-dimensional MRI reconstruction was performed using the clinical workflow solution to evaluate the engraftment of hBM-MSCs. Volumetric analysis of the engraftment was also performed. The volumes of SPIO-labeled hBM-MSCs in the phantom MRI were 129.3, 68.4, and 25.9 microL using SWI, T2{sup *}WI, and T2WI, respectively. SPIO-labeled hBM-MSCs appeared on day 1 after injection, encircling the cerebral infarction from the ventral side. Dark signal regions matched iron positive cells and human origin (positive) cells. The volume of the engraftment was larger in the ICA group on days 1, 3, and 7, after stem cell injection (p < 0.05 on SWI). SWI was the most sensitive MRI pulse sequence (p < 0.05). The volume of infarction decreased until day 14. The engraftment of SPIO-labeled hBM-MSCs can be visualized and evaluated three-dimensionally in PTCI models of rats. The engraftment volume was larger in the ICA group than IV group on early stage within one week.

  18. Classifying and assembling two-dimensional X-ray laser diffraction patterns of a single particle to reconstruct the three-dimensional diffraction intensity function: resolution limit due to the quantum noise.

    Science.gov (United States)

    Tokuhisa, Atsushi; Taka, Junichiro; Kono, Hidetoshi; Go, Nobuhiro

    2012-05-01

    A new two-step algorithm is developed for reconstructing the three-dimensional diffraction intensity of a globular biological macromolecule from many experimentally measured quantum-noise-limited two-dimensional X-ray laser diffraction patterns, each for an unknown orientation. The first step is classification of the two-dimensional patterns into groups according to the similarity of direction of the incident X-rays with respect to the molecule and an averaging within each group to reduce the noise. The second step is detection of common intersecting circles between the signal-enhanced two-dimensional patterns to identify their mutual location in the three-dimensional wavenumber space. The newly developed algorithm enables one to detect a signal for classification in noisy experimental photon-count data with as low as ~0.1 photons per effective pixel. The wavenumber of such a limiting pixel determines the attainable structural resolution. From this fact, the resolution limit due to the quantum noise attainable by this new method of analysis as well as two important experimental parameters, the number of two-dimensional patterns to be measured (the load for the detector) and the number of pairs of two-dimensional patterns to be analysed (the load for the computer), are derived as a function of the incident X-ray intensity and quantities characterizing the target molecule. © 2012 International Union of Crystallography

  19. Assessing symmetry of zygomatic bone through three-dimensional segmentation on computed tomography scan and "mirroring" procedure: A contribution for reconstructive maxillofacial surgery.

    Science.gov (United States)

    Gibelli, Daniele; Cellina, Michaela; Gibelli, Stefano; Oliva, Antonio Giancarlo; Termine, Giovanni; Pucciarelli, Valentina; Dolci, Claudia; Sforza, Chiarella

    2018-04-01

    Surgical reconstruction of zygomatic bones in cases of traumatic injuries is a frequent event: assessment of symmetry is mandatory for a correct restoration of zygomatic shape, but the literature is discordant about its quantification. The purpose of this study is to show a novel method for assessing symmetry of zygomatic bone through mirroring of 3D models segmented on CT-scan. A total of 100 patients (50 male and 50 female), divided into two age groups (18-49 years and 50-92 years) were selected from the computed tomography (CT) scan database of a hospital in northern Italy. Zygomatic bones from each patient were segmented, and the left bone was automatically mirrored and registered on the right one according to the least point-to-point distance between the two surfaces. The mean and root mean square (RMS) distance between the two models was then calculated. Statistically significant differences according to sex and age groups were assessed through two-way analysis of variance (p  0.05), and with negligible effect size. This study provides an innovative method for assessing the symmetry of the zygomatic bone based on surface analysis. Results may provide useful indications for the reconstruction of zygomatic bones in maxillofacial surgery. Copyright © 2018 European Association for Cranio-Maxillo-Facial Surgery. Published by Elsevier Ltd. All rights reserved.

  20. [Biological evaluation of three-dimensional printed co-poly lactic acid/glycolic acid/tri-calcium phosphate scaffold for bone reconstruction].

    Science.gov (United States)

    Li, S Y; Zhou, M; Lai, Y X; Geng, Y M; Cao, S S; Chen, X M

    2016-11-09

    Objective: To biologically evaluate the three-dimensional(3D) printed co-poly lactic acid/glycolic acid/tri-calcium phosphate(PLGA/TCP) scaffold which could be used for repairing oral and maxillofacial bone defects, and to provide experimental evidence for its further research and clinical application. Methods: PLGA/TCP scaffolds were fabricated using low temperature rapid prototyping technique. Micro-CT and scanning electron microscope(SEM) were used to characterize the surface morphology. MC3T3-E1 cells were seeded onto the scaffold and stained with the rhodamine phalloidin and calcein acetomethoxy. After that, confocal laser scanning microscope was exploited to observe the features and viability of the cells. Moreover, the cells were co-cultured with the extract of PLGA/TCP and complete medium, respectively. The proliferation capability of the cells was assessed by the cell counting kit-8 (CCK-8) on the 1st, 2nd, and 3rd day. The PLGA/TCP scaffolds incorporated with recombinant human bone morphogenetic protein-2(rhBMP-2) of 0, 30, 60 μg(i.e. blank control group, low-dose group and high-dose group) were implanted into the latissimus dorsi muscle of the rats, and 6 weeks later, the samples were harvested to estimate the volume and pattern of new bone. Results: The 3D printed PLGA/TCP scaffold possessed a regular and well-defined porous stereo-structure with porosity of (73±3)%. Micro-CT and SEM showed that pore size were (379±32) and (453±29) μm respectively, and distance between layers were (452± 24) and (415±25) μm, and cylinder diameter were (342±24) and (350±28) μm. It also exhibited excellent cell adhesion and growth ability on the exterior and inner surface through rhodamine phalloidin and calcein acetomethoxy staining. The CCK-8 test demonstrated that the absorbance value of extract group on the 1st and 2nd day(0.51±0.08 and 0.63±0.09) were significantly higher than those in the blank control group(0.39± 0.05 and 0.53±0.05)( P 0.05) on the 3

  1. Filtered-backprojection reconstruction for a cone-beam computed tomography scanner with independent source and detector rotations

    Energy Technology Data Exchange (ETDEWEB)

    Rit, Simon, E-mail: simon.rit@creatis.insa-lyon.fr [Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, Department of Radiation Oncology, Centre Léon Bérard, 28 rue Laennec, Lyon 69008 (France); Clackdoyle, Rolf [Laboratoire Hubert Curien, CNRS and Université Jean Monnet (UMR5516), 18 rue du Professeur Benoit Lauras, Saint Etienne F-42000 (France); Keuschnigg, Peter; Steininger, Philipp [Institute for Research and Development on Advanced Radiation Technologies (radART), Paracelsus Medical University, Strubergasse 16, Salzburg 5020, Austria and medPhoton GmbH, Strubergasse 16, Salzburg 5020 (Austria)

    2016-05-15

    Purpose: A new cone-beam CT scanner for image-guided radiotherapy (IGRT) can independently rotate the source and the detector along circular trajectories. Existing reconstruction algorithms are not suitable for this scanning geometry. The authors propose and evaluate a three-dimensional (3D) filtered-backprojection reconstruction for this situation. Methods: The source and the detector trajectories are tuned to image a field-of-view (FOV) that is offset with respect to the center-of-rotation. The new reconstruction formula is derived from the Feldkamp algorithm and results in a similar three-step algorithm: projection weighting, ramp filtering, and weighted backprojection. Simulations of a Shepp Logan digital phantom were used to evaluate the new algorithm with a 10 cm-offset FOV. A real cone-beam CT image with an 8.5 cm-offset FOV was also obtained from projections of an anthropomorphic head phantom. Results: The quality of the cone-beam CT images reconstructed using the new algorithm was similar to those using the Feldkamp algorithm which is used in conventional cone-beam CT. The real image of the head phantom exhibited comparable image quality to that of existing systems. Conclusions: The authors have proposed a 3D filtered-backprojection reconstruction for scanners with independent source and detector rotations that is practical and effective. This algorithm forms the basis for exploiting the scanner’s unique capabilities in IGRT protocols.

  2. Filtered-backprojection reconstruction for a cone-beam computed tomography scanner with independent source and detector rotations

    International Nuclear Information System (INIS)

    Rit, Simon; Clackdoyle, Rolf; Keuschnigg, Peter; Steininger, Philipp

    2016-01-01

    Purpose: A new cone-beam CT scanner for image-guided radiotherapy (IGRT) can independently rotate the source and the detector along circular trajectories. Existing reconstruction algorithms are not suitable for this scanning geometry. The authors propose and evaluate a three-dimensional (3D) filtered-backprojection reconstruction for this situation. Methods: The source and the detector trajectories are tuned to image a field-of-view (FOV) that is offset with respect to the center-of-rotation. The new reconstruction formula is derived from the Feldkamp algorithm and results in a similar three-step algorithm: projection weighting, ramp filtering, and weighted backprojection. Simulations of a Shepp Logan digital phantom were used to evaluate the new algorithm with a 10 cm-offset FOV. A real cone-beam CT image with an 8.5 cm-offset FOV was also obtained from projections of an anthropomorphic head phantom. Results: The quality of the cone-beam CT images reconstructed using the new algorithm was similar to those using the Feldkamp algorithm which is used in conventional cone-beam CT. The real image of the head phantom exhibited comparable image quality to that of existing systems. Conclusions: The authors have proposed a 3D filtered-backprojection reconstruction for scanners with independent source and detector rotations that is practical and effective. This algorithm forms the basis for exploiting the scanner’s unique capabilities in IGRT protocols.

  3. Filtered-backprojection reconstruction for a cone-beam computed tomography scanner with independent source and detector rotations.

    Science.gov (United States)

    Rit, Simon; Clackdoyle, Rolf; Keuschnigg, Peter; Steininger, Philipp

    2016-05-01

    A new cone-beam CT scanner for image-guided radiotherapy (IGRT) can independently rotate the source and the detector along circular trajectories. Existing reconstruction algorithms are not suitable for this scanning geometry. The authors propose and evaluate a three-dimensional (3D) filtered-backprojection reconstruction for this situation. The source and the detector trajectories are tuned to image a field-of-view (FOV) that is offset with respect to the center-of-rotation. The new reconstruction formula is derived from the Feldkamp algorithm and results in a similar three-step algorithm: projection weighting, ramp filtering, and weighted backprojection. Simulations of a Shepp Logan digital phantom were used to evaluate the new algorithm with a 10 cm-offset FOV. A real cone-beam CT image with an 8.5 cm-offset FOV was also obtained from projections of an anthropomorphic head phantom. The quality of the cone-beam CT images reconstructed using the new algorithm was similar to those using the Feldkamp algorithm which is used in conventional cone-beam CT. The real image of the head phantom exhibited comparable image quality to that of existing systems. The authors have proposed a 3D filtered-backprojection reconstruction for scanners with independent source and detector rotations that is practical and effective. This algorithm forms the basis for exploiting the scanner's unique capabilities in IGRT protocols.

  4. Three-dimensional reconstruction of the lower limb's venous system in human fetuses using the computer-assisted anatomical dissection (CAAD) technique.

    Science.gov (United States)

    Kurobe, N; Hakkakian, L; Chahim, M; Delmas, V; Vekemans, M; Uhl, J F

    2015-04-01

    The aim of the present study was to show the feasibility and describe the first results of a 3D reconstruction of the venous network of the lower limbs in human fetus using the computer-assisted anatomical dissection (CAAD) technique. We used limbs from two human fetuses, respectively, 14 and 15 weeks gestation old. Specimens were fixed in 10% formalin, embedded in paraffin wax and serially sectioned at 10 m. The histological slices were stained using HES and Masson Trichrome for soft tissues identification. Immunolabeling techniques using the Protein S-100 marker and the D2-40 marker were used to identify nerves and vessels, respectively. Stained slices were aligned manually, labeled and digitalized. The segmentation of all anatomical structures was achieved using the WinSurf(®) software after manual drawing. A 3D interactive vectorial model of the whole leg, including skin, bone, muscles, arteries, veins, and nerves was obtained. In all limbs, we observed the presence of a big axial vein traveling along the sciatic nerve. In addition, the femoral vein appeared as a small plexus. Although this is a common anatomical feature at the end of organogenesis, this feature is observed in only 9% of adults. Usually interpreted as an "anatomical variation of the femoral vein" it should be considered as a light truncular malformation. These observations bring further support to our proposed "angio-guiding nerves" hypothesis. This preliminary study shows that the CAAD technique provided an accurate 3D reconstruction of the fetal leg veins anatomy. It should bring a new insight for the understanding of the different steps of development of the human venous system.

  5. The Research on Accuracy Evaluation Method of the Tomographic SAR Three-Dimensional Reconstruction of Urban Building Based on Terrestrial LIDAR Point Cloud

    Science.gov (United States)

    Li, L.; Pang, L.; Zhang, X. D.; Liu, H.

    2017-09-01

    Muti-baseLine SAR tomography can be used on 3D reconstruction of urban building based on SAR images acquired. In the near future, it is expected to become an important technical tool for urban multi-dimensional precision monitoring. For the moment There is no effective method to verify the accuracy of tomographic SAR 3D point cloud of urban buildings. In this paper, a new method based on terrestrial Lidar 3D point cloud data to verify the accuracy of the tomographic SAR 3D point cloud data is proposed, 3D point cloud of two can be segmented into different facadeds. Then facet boundary extraction is carried out one by one, to evaluate the accuracy of tomographic SAR 3D point cloud of urban buildings. The experience select data of Pangu Plaza to analyze and compare, the result of experience show that the proposed method that evaluating the accuracy of tomographic SAR 3D point clou of urban building based on lidar 3D point cloud is validity and applicability

  6. A novel region-growing based semi-automatic segmentation protocol for three-dimensional condylar reconstruction using cone beam computed tomography (CBCT.

    Directory of Open Access Journals (Sweden)

    Tong Xi

    Full Text Available OBJECTIVE: To present and validate a semi-automatic segmentation protocol to enable an accurate 3D reconstruction of the mandibular condyles using cone beam computed tomography (CBCT. MATERIALS AND METHODS: Approval from the regional medical ethics review board was obtained for this study. Bilateral mandibular condyles in ten CBCT datasets of patients were segmented using the currently proposed semi-automatic segmentation protocol. This segmentation protocol combined 3D region-growing and local thresholding algorithms. The segmentation of a total of twenty condyles was performed by two observers. The Dice-coefficient and distance map calculations were used to evaluate the accuracy and reproducibility of the segmented and 3D rendered condyles. RESULTS: The mean inter-observer Dice-coefficient was 0.98 (range [0.95-0.99]. An average 90th percentile distance of 0.32 mm was found, indicating an excellent inter-observer similarity of the segmented and 3D rendered condyles. No systematic errors were observed in the currently proposed segmentation protocol. CONCLUSION: The novel semi-automated segmentation protocol is an accurate and reproducible tool to segment and render condyles in 3D. The implementation of this protocol in the clinical practice allows the CBCT to be used as an imaging modality for the quantitative analysis of condylar morphology.

  7. Three-Dimensional Image Fusion of 18F-Fluorodeoxyglucose-Positron Emission Tomography/Computed Tomography and Contrast-Enhanced Computed Tomography for Computer-Assisted Planning of Maxillectomy of Recurrent Maxillary Squamous Cell Carcinoma and Defect Reconstruction.

    Science.gov (United States)

    Yu, Yao; Zhang, Wen-Bo; Liu, Xiao-Jing; Guo, Chuan-Bin; Yu, Guang-Yan; Peng, Xin

    2017-06-01

    The purpose of this study was to describe new technology assisted by 3-dimensional (3D) image fusion of 18 F-fluorodeoxyglucose (FDG)-positron emission tomography (PET)/computed tomography (CT) and contrast-enhanced CT (CECT) for computer planning of a maxillectomy of recurrent maxillary squamous cell carcinoma and defect reconstruction. Treatment of recurrent maxillary squamous cell carcinoma usually includes tumor resection and free flap reconstruction. FDG-PET/CT provided images of regions of abnormal glucose uptake and thus showed metabolic tumor volume to guide tumor resection. CECT data were used to create 3D reconstructed images of vessels to show the vascular diameters and locations, so that the most suitable vein and artery could be selected during anastomosis of the free flap. The data from preoperative maxillofacial CECT scans and FDG-PET/CT imaging were imported into the navigation system (iPlan 3.0; Brainlab, Feldkirchen, Germany). Three-dimensional image fusion between FDG-PET/CT and CECT was accomplished using Brainlab software according to the position of the 2 skulls simulated in the CECT image and PET/CT image, respectively. After verification of the image fusion accuracy, the 3D reconstruction images of the metabolic tumor, vessels, and other critical structures could be visualized within the same coordinate system. These sagittal, coronal, axial, and 3D reconstruction images were used to determine the virtual osteotomy sites and reconstruction plan, which was provided to the surgeon and used for surgical navigation. The average shift of the 3D image fusion between FDG-PET/CT and CECT was less than 1 mm. This technique, by clearly showing the metabolic tumor volume and the most suitable vessels for anastomosis, facilitated resection and reconstruction of recurrent maxillary squamous cell carcinoma. We used 3D image fusion of FDG-PET/CT and CECT to successfully accomplish resection and reconstruction of recurrent maxillary squamous cell carcinoma

  8. Analysis of three-dimensional transonic compressors

    Science.gov (United States)

    Bourgeade, A.

    1984-01-01

    A method for computing the three-dimensional transonic flow around the blades of a compressor or of a propeller is given. The method is based on the use of the velocity potential, on the hypothesis that the flow is inviscid, irrotational and isentropic. The equation of the potential is solved in a transformed space such that the surface of the blade is mapped into a plane where the periodicity is implicit. This equation is in a nonconservative form and is solved with the help of a finite difference method using artificial time. A computer code is provided and some sample results are given in order to demonstrate the influence of three-dimensional effects and the blade's rotation.

  9. Differentiation of human endometrial stem cells into urothelial cells on a three-dimensional nanofibrous silk-collagen scaffold: an autologous cell resource for reconstruction of the urinary bladder wall.

    Science.gov (United States)

    Shoae-Hassani, Alireza; Mortazavi-Tabatabaei, Seyed Abdolreza; Sharif, Shiva; Seifalian, Alexander Marcus; Azimi, Alireza; Samadikuchaksaraei, Ali; Verdi, Javad

    2015-11-01

    Reconstruction of the bladder wall via in vitro differentiated stem cells on an appropriate scaffold could be used in such conditions as cancer and neurogenic urinary bladder. This study aimed to examine the potential of human endometrial stem cells (EnSCs) to form urinary bladder epithelial cells (urothelium) on nanofibrous silk-collagen scaffolds, for construction of the urinary bladder wall. After passage 4, EnSCs were induced by keratinocyte growth factor (KGF) and epidermal growth factor (EGF) and seeded on electrospun collagen-V, silk and silk-collagen nanofibres. Later we tested urothelium-specific genes and proteins (uroplakin-Ia, uroplakin-Ib, uroplakin-II, uroplakin-III and cytokeratin 20) by immunocytochemistry, RT-PCR and western blot analyses. Scanning electron microscopy (SEM) and histology were used to detect cell-matrix interactions. DMEM/F12 supplemented by KGF and EGF induced EnSCs to express urothelial cell-specific genes and proteins. Either collagen, silk or silk-collagen scaffolds promoted cell proliferation. The nanofibrous silk-collagen scaffolds provided a three-dimensional (3D) structure to maximize cell-matrix penetration and increase differentiation of the EnSCs. Human EnSCs seeded on 3D nanofibrous silk-collagen scaffolds and differentiated to urothelial cells provide a suitable source for potential use in bladder wall reconstruction in women. Copyright © 2013 John Wiley & Sons, Ltd.

  10. Numerical simulation of fluid field and in vitro three-dimensional fabrication of tissue-engineered bones in a rotating bioreactor and in vivo implantation for repairing segmental bone defects.

    Science.gov (United States)

    Song, Kedong; Wang, Hai; Zhang, Bowen; Lim, Mayasari; Liu, Yingchao; Liu, Tianqing

    2013-03-01

    In this paper, two-dimensional flow field simulation was conducted to determine shear stresses and velocity profiles for bone tissue engineering in a rotating wall vessel bioreactor (RWVB). In addition, in vitro three-dimensional fabrication of tissue-engineered bones was carried out in optimized bioreactor conditions, and in vivo implantation using fabricated bones was performed for segmental bone defects of Zelanian rabbits. The distribution of dynamic pressure, total pressure, shear stress, and velocity within the culture chamber was calculated for different scaffold locations. According to the simulation results, the dynamic pressure, velocity, and shear stress around the surface of cell-scaffold construction periodically changed at different locations of the RWVB, which could result in periodical stress stimulation for fabricated tissue constructs. However, overall shear stresses were relatively low, and the fluid velocities were uniform in the bioreactor. Our in vitro experiments showed that the number of cells cultured in the RWVB was five times higher than those cultured in a T-flask. The tissue-engineered bones grew very well in the RWVB. This study demonstrates that stress stimulation in an RWVB can be beneficial for cell/bio-derived bone constructs fabricated in an RWVB, with an application for repairing segmental bone defects.

  11. Three-dimensional analysis of deformities of the radius and ulna in congenital proximal radioulnar synostosis.

    Science.gov (United States)

    Nakasone, Motoko; Nakasone, Satoshi; Kinjo, Masaki; Murase, Tsuyoshi; Kanaya, Fuminori

    2018-01-01

    We reconstructed three-dimensional images of radius and ulna in 38 forearms of 25 patients with congenital proximal radioulnar synostosis from their computed tomographic studies. We also analysed correlations between the deformities of radius and ulna and degrees of fixed pronation of these forearms. The average ulnar deviation, flexion and internal rotation deformities of the radius were 6°, 3° and 18°, respectively. The average radial deviation, extension and internal rotation deformities of the ulna were 3°, 4° and 30°, respectively. The flexion deformity of the radius and the internal rotation deformity of the radius and ulna were correlated significantly with degree of fixed pronation. We conclude that the patients with congenital proximal radioulnar synostosis have remarkable flexion deformity of the radius and internal rotation deformity of the radius and ulna, which might impede forearm rotation after corrective surgery in the proximal part of the forearm.

  12. Three-Dimensional Printing in Orthopedic Surgery.

    Science.gov (United States)

    Eltorai, Adam E M; Nguyen, Eric; Daniels, Alan H

    2015-11-01

    Three-dimensional (3D) printing is emerging as a clinically promising technology for rapid prototyping of surgically implantable products. With this commercially available technology, computed tomography or magnetic resonance images can be used to create graspable objects from 3D reconstructed images. Models can enhance patients' understanding of their pathology and surgeon preoperative planning. Customized implants and casts can be made to match an individual's anatomy. This review outlines 3D printing, its current applications in orthopedics, and promising future directions. Copyright 2015, SLACK Incorporated.

  13. Monitoring the three-dimensional ionospheric electron density ...

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Earth System Science; Volume 116; Issue 3. Monitoring the three-dimensional ionospheric ... A numerical experiment is used to validate the reliability of the method and its advantages to the classical algebraic reconstruction technique (ART). This is then used to reconstruct the IED images using ...

  14. Comparison of the Stereotactic Accuracies of Function-Guided Deep Brain Stimulation, Calculated Using Multitrack Target Locations Geometrically Inferred from Three-Dimensional Trajectory Rotations, and of Magnetic Resonance Imaging-Guided Deep Brain Stimulation and Outcomes.

    Science.gov (United States)

    Park, Seong-Cheol; Lee, Chong Sik; Kim, Seok Min; Choi, Eu Jene; Lee, Jung Kyo

    2017-02-01

    In previous studies, multitrack trajectories in deep brain stimulation (DBS) have usually been approximated. Using a geometrically more accurate method, we compared the stereotactic accuracy of DBS with multitrack microelectrode recording and awake stimulation (function group) and MRI-guided DBS (MRI group). One hundred and seventy-two leads used in DBS between April 2014 and January 2016 were evaluated for stereotactic errors. Targets were the subthalamic nucleus (STN, 139 leads) or globus pallidus interna (GPi, 33 leads). We geometrically calculated shifted-track targets by considering the three-dimensional stereotactic ring and arc rotations. Stereotactic errors were calculated using Euclidean distances perpendicular to trajectories. Motor outcomes according to the Unified Parkinson's Disease Rating Scale (UPDRS) part III, improvement percentages by stimulations, were analyzed in 24 patients with 1 year follow-ups. Functional evaluation tended to increase stereotactic errors in the STN function group (n = 129; 1.4 ± 0.7 mm) more than in the STN MRI group (n = 10; 1.0 ± 0.6 mm; P = 0.06). Leads with higher stereotactic errors (n = 65; 1.6 ± 0.7 mm; P 2.5 mm tended to relate to a worse outcome (P = 0.087). Stereotactic errors were lower (n = 33; 0.9 ± 0.5 mm) in the GPi MRI group. Multitrack DBS using intraoperative functional evaluation resulted in worse stereotactic accuracy than did MRI-guided DBS. However, track shifts in function-guided DBS can approach MRI targets effectively. Copyright © 2016 Elsevier Inc. All rights reserved.

  15. Simulation on three dimensional bubble formation using MARS

    International Nuclear Information System (INIS)

    Kunugi, Tomoaki

    1997-01-01

    This paper describes a numerical simulation on three-dimensional bubble formation by means of the MARS (Multi-interfaces Advection and Reconstruction Solver) developed by the author. The comparison between two-dimensional and three-dimensional simulation on an agglomeration of two bubbles is discussed. Moreover, some simulation results regarding a phase change phenomena such as a boiling and condensation in a two dimensional enclosure with heated and cooled walls are presented. (author)

  16. Three-dimensional electrical impedance tomography

    Science.gov (United States)

    Metherall, P.; Barber, D. C.; Smallwood, R. H.; Brown, B. H.

    1996-04-01

    THE electrical resistivity of mammalian tissues varies widely1-5 and is correlated with physiological function6-8. Electrical impedance tomography (EIT) can be used to probe such variations in vivo, and offers a non-invasive means of imaging the internal conductivity distribution of the human body9-11. But the computational complexity of EIT has severe practical limitations, and previous work has been restricted to considering image reconstruction as an essentially two-dimensional problem10,12. This simplification can limit significantly the imaging capabilities of EIT, as the electric currents used to determine the conductivity variations will not in general be confined to a two-dimensional plane13. A few studies have attempted three-dimensional EIT image reconstruction14,15, but have not yet succeeded in generating images of a quality suitable for clinical applications. Here we report the development of a three-dimensional EIT system with greatly improved imaging capabilities, which combines our 64-electrode data-collection apparatus16 with customized matrix inversion techniques. Our results demonstrate the practical potential of EIT for clinical applications, such as lung or brain imaging and diagnostic screening8.

  17. Equilibrium: three-dimensional configurations

    International Nuclear Information System (INIS)

    Anon.

    1987-01-01

    This chapter considers toroidal MHD configurations that are inherently three-dimensional. The motivation for investigation such complicated equilibria is that they possess the potential for providing toroidal confinement without the need of a net toroidal current. This leads to a number of advantages with respect to fusion power generation. First, the attractive feature of steady-state operation becomes more feasible since such configurations no longer require a toroidal current transformer. Second, with zero net current, one potentially dangerous class of MHD instabilities, the current-driven kink modes, is eliminated. Finally, three-dimensional configurations possess nondegenerate flux surfaces even in the absence of plasma pressure and plasma current. Although there is an enormous range of possible three-dimensional equilibria, the configurations of interest are accurately described as axisymmetric tori with superimposed helical fields; furthermore, they possess no net toroidal current. Instead, two different and less obvious restoring forces are developed: the helical sideband force and the toroidal dipole current force. Each is discussed in detail in Chapter 7. A detailed discussion of the parallel current constraint, including its physical significance, is given in section 7.2. A general analysis of helical sideband equilibria, along with a detailed description of the Elmo bumpy torus, is presented in sections 7.3 and 7.4. A general description of toroidal dipole-current equilibria, including a detailed discussion of stellarators, heliotrons, and torsatrons, is given in sections 7.5 and 7.6

  18. Visual Interpretation with Three-Dimensional Annotations (VITA): Three-Dimensional Image Interpretation Tool for Radiological Reporting

    OpenAIRE

    Roy, Sharmili; Brown, Michael S.; Shih, George L.

    2013-01-01

    This paper introduces a software framework called Visual Interpretation with Three-Dimensional Annotations (VITA) that is able to automatically generate three-dimensional (3D) visual summaries based on radiological annotations made during routine exam reporting. VITA summaries are in the form of rotating 3D volumes where radiological annotations are highlighted to place important clinical observations into a 3D context. The rendered volume is produced as a Digital Imaging and Communications i...

  19. Real three-dimensional biquadrics

    Energy Technology Data Exchange (ETDEWEB)

    Krasnov, Vyacheslav A [P.G. Demidov Yaroslavl State University, Yaroslavl (Russian Federation)

    2010-09-07

    We find the topological types of biquadrics (complete intersections of two real four-dimensional quadrics). The rigid isotopy classes of real three-dimensional biquadrics were described long ago: there are nine such classes. We find the correspondence between the topological types of real biquadrics and their rigid isotopy classes, and show that only two rigid isotopy classes have the same topological type. One of these classes consists of real GM-varieties and the other contains no GM-varieties. We also study the sets of real lines on real biquadrics.

  20. Three dimensional animated images of anorectal malformations

    International Nuclear Information System (INIS)

    Ueno, Shigeru; Yanagimachi, Noriharu; Muro, Isao; Komiya, Taizo; Yokoyama, Seishichi; Hirakawa, Hitoshi; Tajima, Tomoo; Mitomi, Toshio; Suto, Yasuzo.

    1996-01-01

    Accurate reconstruction of the pelvic structures is a most important factor in obtaining a desirable result after anorectoplasty for a patient with anorectal malformation. Preoperative evaluation of the anatomy is indispensable for choosing an appropriate operative method in each case. To facilitate preoperative evaluation, three dimensional animated images of the pelvic structure of patients with anorectal malformations were constructed by computer graphics based upon tomographic images obtained from magnetic resonance imaging. Axial 1-mm thick images of the pelvic portion were generated with spoiling pulse gradient echo sequences using short repetition times (13 msec TR) and short echo times (6 msec TE) with a flip angle of 25 degrees with the patient in the jack-knife position. Graphic data from MR images were transferred to a graphic work station and processed on it. The skin surface, the ano-rectum, the lower urinary tract and the sphincter musculature were segmented by thresholding images by the signal intensity. Three dimensional images were displayed by surface rendering method using the segmented data of each organ and then animation images of these organs were obtained. The anatomy of each type of anomaly was easily recognized by 3-D visualization, and animation of the pelvic viscera and the sphincter musculature made the images more realistic. Animated images of the musculature were especially useful for simulating surgical procedures and could be helpful for reviewing surgical results. (author)

  1. Three-dimensional turbopump flowfield analysis

    Science.gov (United States)

    Sharma, O. P.; Belford, K. A.; Ni, R. H.

    1992-01-01

    A program was conducted to develop a flow prediction method applicable to rocket turbopumps. The complex nature of a flowfield in turbopumps is described and examples of flowfields are discussed to illustrate that physics based models and analytical calculation procedures based on computational fluid dynamics (CFD) are needed to develop reliable design procedures for turbopumps. A CFD code developed at NASA ARC was used as the base code. The turbulence model and boundary conditions in the base code were modified, respectively, to: (1) compute transitional flows and account for extra rates of strain, e.g., rotation; and (2) compute surface heat transfer coefficients and allow computation through multistage turbomachines. Benchmark quality data from two and three-dimensional cascades were used to verify the code. The predictive capabilities of the present CFD code were demonstrated by computing the flow through a radial impeller and a multistage axial flow turbine. Results of the program indicate that the present code operated in a two-dimensional mode is a cost effective alternative to full three-dimensional calculations, and that it permits realistic predictions of unsteady loadings and losses for multistage machines.

  2. AAOGlimpse: Three-dimensional Data Viewer

    Science.gov (United States)

    Shortridge, Keith

    2011-10-01

    AAOGlimpse is an experimental display program that uses OpenGL to display FITS data (and even JPEG images) as 3D surfaces that can be rotated and viewed from different angles, all in real-time. It is WCS-compliant and designed to handle three-dimensional data. Each plane in a data cube is surfaced in the same way, and the program allows the user to travel through a cube by 'peeling off' successive planes, or to look into a cube by suppressing the display of data below a given cutoff value. It can blink images and can superimpose images and contour maps from different sources using their world coordinate data. A limited socket interface allows communication with other programs.

  3. Entanglement entropy in three dimensional gravity

    Energy Technology Data Exchange (ETDEWEB)

    Maxfield, Henry [Centre for Particle Theory & Department of Mathematical Sciences, Durham University,South Road, Durham DH1 3LE (United Kingdom)

    2015-04-07

    The Ryu-Takayanagi (RT) and covariant Hubeny-Rangamani-Takayanagi (HRT) proposals relate entanglement entropy in CFTs with holographic duals to the areas of minimal or extremal surfaces in the bulk geometry. We show how, in three dimensional pure gravity, the relevant regulated geodesic lengths can be obtained by writing a spacetime as a quotient of AdS{sub 3}, with the problem reduced to a simple purely algebraic calculation. We explain how this works in both Lorentzian and Euclidean formalisms, before illustrating its use to obtain novel results in a number of examples, including rotating BTZ, the ℝℙ{sup 2} geon, and several wormhole geometries. This includes spatial and temporal dependence of single-interval entanglement entropy, despite these symmetries being broken only behind an event horizon. We also discuss considerations allowing HRT to be derived from analytic continuation of Euclidean computations in certain contexts, and a related class of complexified extremal surfaces.

  4. An algorithm for three-dimensional imaging in the positron camera

    International Nuclear Information System (INIS)

    Chen Kun; Ma Mei; Xu Rongfen; Shen Miaohe

    1986-01-01

    A mathematical algorithm of back-projection filtered for image reconstructions using two-dimensional signals detected from parallel multiwire proportional chambers is described. The approaches of pseudo three-dimensional and full three-dimensional image reconstructions are introduced, and the available point response functions are defined as well. The designing parameters and computation procedure of the full three-dimensional method is presented

  5. Freehand three-dimensional ultrasound to assess semitendinosus muscle morphology

    NARCIS (Netherlands)

    Haberfehlner, H.; Maas, H.; Harlaar, J.; Becher, J.G.; Buizer, A.I.; Jaspers, R.T.

    2016-01-01

    In several neurological disorders and muscle injuries, morphological changes of the m. semitendinosus (ST) are presumed to contribute to movement limitations around the knee. Freehand three-dimensional (3D) ultrasound (US), using position tracking of two-dimensional US images to reconstruct a 3D

  6. Three dimensional magnetic abacus memory.

    Science.gov (United States)

    Zhang, ShiLei; Zhang, JingYan; Baker, Alexander A; Wang, ShouGuo; Yu, GuangHua; Hesjedal, Thorsten

    2014-08-22

    Stacking nonvolatile memory cells into a three-dimensional matrix represents a powerful solution for the future of magnetic memory. However, it is technologically challenging to access the data in the storage medium if large numbers of bits are stacked on top of each other. Here we introduce a new type of multilevel, nonvolatile magnetic memory concept, the magnetic abacus. Instead of storing information in individual magnetic layers, thereby having to read out each magnetic layer separately, the magnetic abacus adopts a new encoding scheme. It is inspired by the idea of second quantisation, dealing with the memory state of the entire stack simultaneously. Direct read operations are implemented by measuring the artificially engineered 'quantised' Hall voltage, each representing a count of the spin-up and spin-down layers in the stack. This new memory system further allows for both flexible scaling of the system and fast communication among cells. The magnetic abacus provides a promising approach for future nonvolatile 3D magnetic random access memory.

  7. Three-Dimensional Laser Microvision

    Science.gov (United States)

    Shimotahira, Hiroshi; Iizuka, Keigo; Chu, Sun-Chun; Wah, Christopher; Costen, Furnie; Yoshikuni, Yuzo

    2001-04-01

    A three-dimensional (3-D) optical imaging system offering high resolution in all three dimensions, requiring minimum manipulation and capable of real-time operation, is presented. The system derives its capabilities from use of the superstructure grating laser source in the implementation of a laser step frequency radar for depth information acquisition. A synthetic aperture radar technique was also used to further enhance its lateral resolution as well as extend the depth of focus. High-speed operation was made possible by a dual computer system consisting of a host and a remote microcomputer supported by a dual-channel Small Computer System Interface parallel data transfer system. The system is capable of operating near real time. The 3-D display of a tunneling diode, a microwave integrated circuit, and a see-through image taken by the system operating near real time are included. The depth resolution is 40 m; lateral resolution with a synthetic aperture approach is a fraction of a micrometer and that without it is approximately 10 m.

  8. Three dimensional imaging of otoliths

    International Nuclear Information System (INIS)

    Barry, B.; Markwitz, A.; David, B.

    2008-01-01

    Otoliths are small structures in fish ears made of calcium carbonate which carry a record of the environment in which the fish live. Traditionally, in order to study their microchemistry by a scanning technique such as PIXE the otoliths have been either ground down by hand or thin sectioned to expose the otolith core. However this technique is subject to human error in judging the core position. In this study we have scanned successive layers of otoliths 50 and 100 μm apart by removing the otolith material in a lapping machine which can be set to a few μm precision. In one study by comparing data from otoliths from the two ears of a freshwater species we found that polishing by hand could miss the core and thus give misleading results as to the life cycle of the fish. In another example we showed detail in a marine species which could be used to build a three dimensional picture of the Sr distribution. (author)

  9. Three dimensional magnetic abacus memory

    Science.gov (United States)

    Zhang, Shilei; Zhang, Jingyan; Baker, Alexander; Wang, Shouguo; Yu, Guanghua; Hesjedal, Thorsten

    2015-03-01

    Stacking nonvolatile memory cells into a three-dimensional matrix represents a powerful solution for the future of magnetic memory. However, it is technologically challenging to access the individual data in the storage medium if large numbers of bits are stacked on top of each other. Here we introduce a new type of multilevel, nonvolatile magnetic memory concept, the magnetic abacus. Instead of storing information in individual magnetic layers, thereby having to read out each magnetic layer separately, the magnetic abacus adopts a new encoding scheme which envisages a classical abacus with the beads operated by electron spins. It is inspired by the idea of second quantization, dealing with the memory state of the entire stack simultaneously. Direct read operations are implemented by measuring the artificially engineered `quantized' Hall voltage, representing a count of the spin-up and spin-down layers in the stack. This concept of `second quantization of memory' realizes the 3D memory architecture with superior reading and operation efficiency, thus is a promising approach for future nonvolatile magnetic random access memory.

  10. Electron tomography, three-dimensional Fourier analysis and colour prediction of a three-dimensional amorphous biophotonic nanostructure

    Science.gov (United States)

    Shawkey, Matthew D.; Saranathan, Vinodkumar; Pálsdóttir, Hildur; Crum, John; Ellisman, Mark H.; Auer, Manfred; Prum, Richard O.

    2009-01-01

    Organismal colour can be created by selective absorption of light by pigments or light scattering by photonic nanostructures. Photonic nanostructures may vary in refractive index over one, two or three dimensions and may be periodic over large spatial scales or amorphous with short-range order. Theoretical optical analysis of three-dimensional amorphous nanostructures has been challenging because these structures are difficult to describe accurately from conventional two-dimensional electron microscopy alone. Intermediate voltage electron microscopy (IVEM) with tomographic reconstruction adds three-dimensional data by using a high-power electron beam to penetrate and image sections of material sufficiently thick to contain a significant portion of the structure. Here, we use IVEM tomography to characterize a non-iridescent, three-dimensional biophotonic nanostructure: the spongy medullary layer from eastern bluebird Sialia sialis feather barbs. Tomography and three-dimensional Fourier analysis reveal that it is an amorphous, interconnected bicontinuous matrix that is appropriately ordered at local spatial scales in all three dimensions to coherently scatter light. The predicted reflectance spectra from the three-dimensional Fourier analysis are more precise than those predicted by previous two-dimensional Fourier analysis of transmission electron microscopy sections. These results highlight the usefulness, and obstacles, of tomography in the description and analysis of three-dimensional photonic structures. PMID:19158016

  11. Three Dimensional Polarimetric Neutron Tomography of Magnetic Fields

    DEFF Research Database (Denmark)

    Sales, Morten; Strobl, Markus; Shinohara, Takenao

    2018-01-01

    -destructively with the potential to probe the interior of bulk samples which is not amenable otherwise. Using a pioneering polarimetric set-up for ToF neutron instrumentation in combination with a newly developed tailored reconstruction algorithm, the magnetic field generated by a current carrying solenoid has been measured......Through the use of Time-of-Flight Three Dimensional Polarimetric Neutron Tomography (ToF 3DPNT) we have for the first time successfully demonstrated a technique capable of measuring and reconstructing three dimensional magnetic field strengths and directions unobtrusively and non...... and reconstructed, thereby providing the proof-of-principle of a technique able to reveal hitherto unobtainable information on the magnetic fields in the bulk of materials and devices, due to a high degree of penetration into many materials, including metals, and the sensitivity of neutron polarisation to magnetic...

  12. THREE-DIMENSIONAL RECONSTRUCTION OF THE ANTERIOR OLFACTORY NUCLEUS IN THE HUMAN OLFACTORY BULB AND PEDUNCLE. Reconstrucción tridimiensional del núcleo olfatorio anterior en el bulbo y pedúnculo olfatorio humano

    Directory of Open Access Journals (Sweden)

    Steven Berendsen

    2016-03-01

    case by Crosby and Humphrey (1941. To improve our understanding of the anatomy of the human bulbar and peduncular AON, we investigated the morphology, size and shape of these parts of this nucleus in postmortem tissue of aged individuals. Six olfactory bulbs and peduncles including the substantia perforata anterior (SPA were obtained from donor brains and 40µm horizontal serial sections were cut and stained with Nissl substance. The medium to large sized neurons of these parts of the AON were intensely stained and had an average diameter of 16µm. Three dimensional reconstruction demonstrated that in all but one of the cases the bulbar and peduncular AON consisted on a discontinuous chain of cell groups connected by cell poor to cell free bridges of neuropile. The number of cell groups and the connecting bridges differ in every individual. We arrived at the conclusion that the bulbar and peduncular parts of the human AON should be regarded a human specialization rather than just being rostral extensions of the retrobulbar AON area. This is in line with previously published neurochemical properties and the selective early, preclinical degener-ation of these cell clusters in neurodegenerative diseases. 

  13. The rotate-plus-shift C-arm trajectory. Part II. Exact reconstruction from less than 180° rotation.

    Science.gov (United States)

    Kuntz, Jan; Ritschl, Ludwig; Knaup, Michael; Kachelrieß, Marc

    2016-05-01

    CT reconstruction requires an angular coverage of 180° or more for each point within the field of measurement. Thus, common trajectories use a 180° plus fan angle rotation. This is sometimes combined with a translation of the rotational isocenter in order to achieve circular trajectories with an isocenter different from the mechanical rotation center or elliptical trajectories. Rays measured redundantly are appropriately weighted. In case of an angular coverage smaller than 180°, the reconstructed images suffer from limited angle artifacts. In mechanical constructions with a rotation range limited to less than 180° plus fan angle, the angular coverage can be extended by adding one or two shifts to the rotational motion. If the missing angle is less than the fan angle, the shifts can completely compensate for the limited rotational capabilities. The authors give weight functions that can be viewed as generalized Parker weights, which can be applied to the raw data before image reconstruction. Raw data of Forbild phantoms using the rotate-plus-shift trajectory are simulated with the geometry of a typical mobile flat detector-based C-arm system. Filtered backprojection (FBP) reconstructions using the new redundancy weight are performed and compared to FBP reconstructions of limited angle scans as well as short-scan reference trajectories using Parker weight. The new weighting method is exact in 2D, and for 3D Feldkamp-type reconstructions, it is exact in the mid-plane. The proposed weight shows a mathematically exact match with Parker weight for conventional short-scan trajectories. Reconstructions of rotate-plus-shift trajectories using the new weight do not suffer from limited angle artifacts, whereas scans limited to less than 180° without shift show prominent artifacts. Image noise in rotate-plus-shift scans is comparable to that of corresponding short scans. The new weight function enables the straightforward reconstruction using filtered backprojection of

  14. Data Visualization in Physics II: VRML and Java for three-dimensional imaging and fully three-dimensional movies

    Science.gov (United States)

    Fenton, Flavio H.; Evans, Steven J.; Hastings, Harold M.; Cherry, Elizabeth M.

    2006-03-01

    Presentation and analysis of large three-dimensional data sets is in general hard to do using only two-dimensional figures and plots. In this talk, we will demonstrate techniques for illustrating static and dynamic three-dimensional objects and data using Virtual Reality Modeling Language (VRML) as well as Java. The advantage of these two languages is that they are platform-independent, which allows for easy sharing of data and visualizations. In addition, manipulation of data is relatively easy as rotation, translation and zooming can be done in real- time for static objects as well as for data and objects that vary and deform in time. Examples of fully three-dimensional movies will be shown, including dendritic growth and propagation of electrical waves in cardiac tissue. In addition, we will show how to include VRML and Java viewers in PowerPoint for easy presentation of results in classes and seminars.

  15. THREE-DIMENSIONAL ULTRASOUND IN GYNECOLOGIC ONCOLOGY

    Directory of Open Access Journals (Sweden)

    Iztok Takač

    2003-12-01

    Full Text Available Background. Although three-dimensional ultrasound (3D US imaging has been used for a decade, debate continues about its potential clinical aplications in gynecology. The same is true for the field of gynecologic oncology. Also, reports regarding usfulness of 3D US in gynecologic oncology are limited. A few potentially useful clinical applications have been described and some of these are now gaining general acceptance. In this paper, the usfulness of 3D US in the main areas of its application is demonstrated: diagnostics of cervical, endometrial, ovarian and breast cancer.Conclusions. An important advantage of 3D US over conventional two-dimensional imaging is the ability to reconstruct and display any arbitrarily chosen section within the volume dataset as well as ability to measure the volume of pelvic organs regardless of their shape. 3D US also allows the realtime analysis of the acquired image data to be conducted at a later time when the patient is off the examination table.

  16. An iterative reduced field-of-view reconstruction for periodically rotated overlapping parallel lines with enhanced reconstruction (PROPELLER) MRI.

    Science.gov (United States)

    Lin, Jyh-Miin; Patterson, Andrew J; Chang, Hing-Chiu; Gillard, Jonathan H; Graves, Martin J

    2015-10-01

    To propose a new reduced field-of-view (rFOV) strategy for iterative reconstructions in a clinical environment. Iterative reconstructions can incorporate regularization terms to improve the image quality of periodically rotated overlapping parallel lines with enhanced reconstruction (PROPELLER) MRI. However, the large amount of calculations required for full FOV iterative reconstructions has posed a huge computational challenge for clinical usage. By subdividing the entire problem into smaller rFOVs, the iterative reconstruction can be accelerated on a desktop with a single graphic processing unit (GPU). This rFOV strategy divides the iterative reconstruction into blocks, based on the block-diagonal dominant structure. A near real-time reconstruction system was developed for the clinical MR unit, and parallel computing was implemented using the object-oriented model. In addition, the Toeplitz method was implemented on the GPU to reduce the time required for full interpolation. Using the data acquired from the PROPELLER MRI, the reconstructed images were then saved in the digital imaging and communications in medicine format. The proposed rFOV reconstruction reduced the gridding time by 97%, as the total iteration time was 3 s even with multiple processes running. A phantom study showed that the structure similarity index for rFOV reconstruction was statistically superior to conventional density compensation (p concept of rFOV reconstruction may potentially be applied to other kinds of iterative reconstructions for shortened reconstruction duration.

  17. Panoramic three-dimensional CT imaging

    International Nuclear Information System (INIS)

    Kawamata, Akitoshi; Fujishita, Masami

    1998-01-01

    Panoramic radiography is a unique projection technique for producing a single image of both maxillary and mandibular arches and many other anatomical structures. To obtain a similar panoramic image without panoramic radiography system, a modified three-dimensional (3D) CT imaging technique was designed. A set of CT slice image data extending from the chin to the orbit was used for 3D reconstruction. The CT machine used in this study was the X-Vision (TOSHIBA, Japan). The helical scan technique was used. The slice thickness of reconstructed image was one or 1.5 mm. The occlusal plane or Frankfort horizontal (FH) plane was used as the reference line. The resultant slice image data was stored on a magnetic optical disk and then used to create panoramic 3D-CT images on a Macintosh computer systems (Power Macintosh 8600/250, Apple Computer Inc., USA). To create the panoramic 3D-CT image, the following procedure was designed: Design a curved panoramic 3D-CT imaging layer using the imaging layer and the movement of the x-ray beam in panoramic radiography system as a template; Cut this imaging layer from each slice image, then the trimmed image was transformed to a rectangular layer using the ''still image warping'' special effect in the Elastic Reality special effects system (Elastic Reality Inc., USA); Create panoramic 3D-CT image using the Voxel View (Vital Images Inc., USA) rendering system and volume rendering technique. Although the image quality was primitive, a panoramic view of maxillofacial region was obtained by this technique. (author)

  18. Elastocapillary fabrication of three-dimensional microstructures

    NARCIS (Netherlands)

    van Honschoten, J.W.; Berenschot, Johan W.; Ondarcuhu, T.; Sanders, Remco G.P.; Sundaram, J.; Elwenspoek, Michael Curt; Tas, Niels Roelof

    2010-01-01

    We describe the fabrication of three-dimensional microstructures by means of capillary forces. Using an origami-like technique, planar silicon nitride structures of various geometries are folded to produce three-dimensional objects of 50–100 m. Capillarity is a particularly effective mechanism since

  19. Rotational profile alterations after anatomic posterolateral corner reconstructions in multiligament injured knees.

    Science.gov (United States)

    Tardy, Nicolas; Mouton, Caroline; Boisrenoult, Philippe; Theisen, Daniel; Beaufils, Philippe; Seil, Romain

    2014-09-01

    Injuries of the posterolateral corner (PLC) are rare and severe knee injuries, resulting in posterolateral rotatory instability and an increase in external rotation. Surgical reconstruction techniques reproducing the normal anatomy showed promising results. In vivo evaluations of static rotational knee laxity at 30° of knee flexion have not been reported so far. The purpose of this study was to evaluate static rotational knee laxity after anatomic PLC reconstructions. This is a retrospective clinical cohort study. Twenty patients with PLC reconstructions with an average follow-up time of 39 ± 22 months and no history of knee trauma or surgery of the contralateral knee were included in the study. They underwent a routine clinical examination and static rotational laxity measurements at 30° of knee flexion in the prone position. Side-to-side differences were recorded and compared to a group of matched controls. The postoperative IKDC score was graded A for 8 patients, B for 16, C for 6 and D for one patient. The primary goal of the surgical procedure which consists in reducing excessive external tibiofemoral rotation could be reached in 18 of the 20 patients (90%). Anatomic PLC reconstructions yielded a comparable rotational profile in operated and healthy knees in 7 patients (35%). Thirteen patients (65%) presented a significantly altered rotational profile in comparison with a healthy control group. Unexpected increases in internal rotation were found in 8 patients (40%). Anatomic PLC reconstructions reduced excessive external tibiofemoral rotation in a vast majority of patients. Static rotational laxity measurements allowed for a determination of the patients' individual rotational profile after PLC reconstructions. This profile was normalised in only one-third of the patients. The understanding of this finding needs further investigation as well as the clinical impact of rotational profile alterations on knee function. Diagnostic studies, Level III.

  20. Three-dimensional MR imaging of congenital heart disease

    International Nuclear Information System (INIS)

    Laschinger, J.C.; Vannier, M.W.; Knapp, R.H.; Gutierrez, F.R.; Cox, J.L.

    1987-01-01

    Contiguous 5-mm thick ECG-gated MR images of the thorax were edited using surface reconstruction techniques to produce three-dimensional (3D) images of the heart and great vessels in four healthy individuals and 25 patients with congenital heart disease (aged 3 months-30 years). Anomalies studied include atrial and ventricular septal defects, aortic coarctation, AV canal defects, double outlet ventricles, hypoplastic left heart syndrome, and a wide spectrum of patients with tetralogy of Fallot. The results were correlated with echocardiographic and cineradiographic studies, and with surgical findings or pathologic specimens. Three-dimensional reconstructions accurately localized the dimensions and locations of all cardiac and great vessel anomalies and often displayed anatomic findings not diagnosed or visualized with other forms of diagnostic imaging

  1. Fusion of three-dimensional X-ray angiography and three-dimensional echocardiography

    International Nuclear Information System (INIS)

    Rasche, Volker; Mansour, Moussa; Reddy, Vivek; Singh, Jagmeet P.; Ruskin, Jeremy; Qureshi, Answer; Manzke, Robert; Sokka, Sham

    2008-01-01

    Cardiovascular intervention guidance requires knowledge of heart function relative to its blood supply or venous drainage. Functional and vascular anatomic data are usually generated on different imaging systems, so fusion of the data is necessary to simultaneously visualize the results for intervention planning and guidance. The objective of this work is to establish the feasibility of fusing volumetric ultrasound (U/S) data with three-dimensional (3D) X-ray imaging data for visualization of cardiac morphology, function and coronary venous drainage. Temporally resolved U/S volume data was registered with the 3D reconstruction of vascular structures derived from X-ray modeling and reconstruction. U/S image registration was obtained by optical tracking fiducial markers with simultaneous X-ray imaging. The proposed technique was applied to phantom data for accuracy assessment of the registration process and to biventricular pacemaker implantation as clinical example. Fusion of U/S data with 3D X-ray reconstruction data produced an RMS registration error below 2 mm. Preliminary clinical feasibility of U/S-derived data synchronously with X-ray derived 3D coronary venography was established. This technique can be applied for fusion of functional U/S data with 3D anatomic X-ray data of the coronary veins during a biventricular pacemaker implantation procedures. (orig.)

  2. Microlaser-based three-dimensional display

    Science.gov (United States)

    Takeuchi, Eric B.; Bergstedt, Robert; Hargis, David E.; Higley, Paul D.

    1999-08-01

    Three dimensional (3D) displays are critical for viewing complex multi-dimensional information and for viewing representations of the three dimensional real world. A teaming arrangement between Laser Power Corporation (LPC) and Specialty Devices, Inc. (SDI) has led to the feasibility demonstration of a directly-viewed three dimensional volumetric display. LPC has developed red, green, and blue (RGB) diode pumped solid state microlaser display technology for use as a high resolution, high brightness display engine for the three dimensional display. Concurrently, SDI has developed a unique technology for viewing high resolution three dimensional volumetric images without external viewing aids (eye wear). When coupled to LPC's display engine, the resultant all solid state three dimensional display presets a true, physical three dimensionality which is directly viewable from all angles by multiple viewers without additional viewing equipment (eye wear). The resultant volumetric display will further enable applications such as the 'virtual sandbox,' visualization of radar and sonar data, air traffic control, remote surgery and diagnostics, and CAD workstations.

  3. Three-dimensional appearance of the lips muscles with three-dimensional isotropic MRI: in vivo study.

    Science.gov (United States)

    Olszewski, Raphael; Liu, Y; Duprez, T; Xu, T M; Reychler, H

    2009-06-01

    Our knowledge of facial muscles is based primarily on atlases and cadaveric studies. This study describes a non-invasive in vivo method (3D MRI) for segmenting and reconstructing facial muscles in a three-dimensional fashion. Three-dimensional (3D), T1-weighted, 3 Tesla, isotropic MRI was applied to a subject. One observer performed semi-automatic segmentation using the Editor module from the 3D Slicer software (Harvard Medical School, Boston, MA, USA), version 3.2. We were able to successfully outline and three-dimensionally reconstruct the following facial muscles: pars labialis orbicularis oris, m. levatro labii superioris alaeque nasi, m. levator labii superioris, m. zygomaticus major and minor, m. depressor anguli oris, m. depressor labii inferioris, m. mentalis, m. buccinator, and m. orbicularis oculi. 3D reconstruction of the lip muscles should be taken into consideration in order to improve the accuracy and individualization of existing 3D facial soft tissue models. More studies are needed to further develop efficient methods for segmentation in this field.

  4. Three-dimensional structure of olefinic thermoplastic elastomer blends using electron tomography

    NARCIS (Netherlands)

    Sengupta, P.; Noordermeer, Jacobus W.M.

    2005-01-01

    The present communication reports the first use of electron tomography in reconstructing the three-dimensional morphology in thermoplastic elastomer blends. The blends investigated were dynamically vulcanized blends of ethylene-propylene-diene (EPDM) rubber/poly(propylene)/oil and

  5. Parallelization method for three dimensional MOC calculation

    International Nuclear Information System (INIS)

    Zhang Zhizhu; Li Qing; Wang Kan

    2013-01-01

    A parallelization method based on angular decomposition for the three dimensional MOC was designed. To improve the parallel efficiency, the directions were pre-grouped and the groups were assembled to minimize the communication. The improved parallelization method was applied to the three dimensional MOC code TCM. The numerical results show that the calculation results of parallelization method are agreed with serial calculation results. The parallel efficiency gets obvious increase after the communication optimized and load balance. (authors)

  6. Three-dimensional effects in fracture mechanics

    International Nuclear Information System (INIS)

    Benitez, F.G.

    1991-01-01

    An overall view of the pioneering theories and works, which enlighten the three-dimensional nature of fracture mechanics during the last years is given. the main aim is not an exhaustive reviewing but the displaying of the last developments on this scientific field in a natural way. This work attempts to envisage the limits of disregarding the three-dimensional behaviour in theories, analyses and experiments. Moreover, it tries to draw attention on the scant fervour, although increasing, this three-dimensional nature of fracture has among the scientific community. Finally, a constructive discussion is presented on the use of two-dimensional solutions in the analysis of geometries which bear a three-dimensional configuration. the static two-dimensional solutions and its applications fields are reviewed. also, the static three-dimensional solutions, wherein a comparative analysis with elastoplastic and elastostatic solutions are presented. to end up, the dynamic three-dimensional solutions are compared to the asymptotic two-dimensional ones under the practical applications point of view. (author)

  7. Peaks and troughs of three-dimensional vestibulo-ocular reflex in humans

    NARCIS (Netherlands)

    Goumans, J.; Houben, M.M.J.; Dits, J.; Steen, J. van der

    2010-01-01

    The three-dimensional vestibulo-ocular reflex (3D VOR) ideally generates compensatory ocular rotations not only with a magnitude equal and opposite to the head rotation but also about an axis that is collinear with the head rotation axis. Vestibulo-ocular responses only partially fulfill this ideal

  8. Three-dimensional Microarchitecture of Adolescent Cancellous Bone

    DEFF Research Database (Denmark)

    Ding, Ming; Hvid, I; Overgaard, Søren

    regarding three-dimensional (3-D) microarchitecture of normal adolescent cancellous bone. The objective of this study was to investigate 3-D microarchitecture of normal adolescent cancellous bone, and compared them with adult cancellous bone, thus seeking more insight into the subchondral bone adaptations...... during development and growth. We hypothesized that adolescent cancellous bone differed significantly from adult cancellous bone in their microarchitecture and mechanical properties. METHODS: Twenty-three human proximal tibiae were harvested and divided into 3 groups according to their ages: adolescence...... of Orthopaedics & Traumatology and Institute of Forensic Medicine, Odense and Aarhus University Hospitals, Denmark. RESULTS: Three-dimensional reconstructions of cancellous bone from micro-CT imaging are shown in Figure 1. Our data showed that trabecular separation was significantly greater in the adolescence...

  9. Three-dimensional potential energy surface of Ar–CO

    Energy Technology Data Exchange (ETDEWEB)

    Sumiyoshi, Yoshihiro, E-mail: y-sumiyoshi@gunma-u.ac.jp [Division of Pure and Applied Science, Graduate School of Science and Technology, Gunma University, 4-2 Aramaki, Maebashi, Gunma 371-8510 (Japan); Endo, Yasuki [Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902 (Japan)

    2015-01-14

    A three-dimensional intermolecular potential energy surface of the Ar–CO complex has been determined by fitting most of the previously reported spectroscopic data, where observed transition frequencies by microwave, millimeter-wave, submillimeter-wave, and infrared spectroscopy were reproduced simultaneously within their experimental accuracies. A free rotor model Hamiltonian considering all the freedom of motions for an atom-diatom system was applied to calculate vibration-rotation energies. A three-dimensional potential energy surface obtained by ab initio calculations at the CCSD(T)-F12b/aug-cc-pV5Z level of theory was parameterized by a model function consisting of 46 parameters. They were used as initial values for the least-squares analysis of the experimental data. A total of 20 parameters were optimized to reproduce all the spectroscopic data.

  10. Three-dimensional imaging of magnetic nanoparticles using multiple pickup coils and field-free line

    Science.gov (United States)

    Muta, Masahiro; Hamanaga, Shohei; Tanaka, Naoki; Sasayama, Teruyoshi; Yoshida, Takashi; Enpuku, Keiji

    2018-02-01

    We performed three-dimensional detection of magnetic nanoparticle (MNP) samples using third-harmonic signal detection. In this method, a combination of five pickup coils and a gradient field with a field-free line was used to acquire three-dimensional MNP sample position information. The resulting two-dimensional maps of the signal fields generated by the MNP samples are sufficient for three-dimensional MNP image reconstruction. In the experiments, two MNP samples with different Fe contents were set at different positions. Two-dimensional field maps were measured using the five pickup coils, and the three-dimensional MNP sample distribution was then reconstructed from these field maps by solving an inversion problem. We demonstrated three-dimensional detection of two MNP samples where we reconstructed the three-dimensional positions and the Fe contents of these two MNP samples with reasonable accuracy. These results indicate the feasibility of the proposed system for three-dimensional magnetic particle imaging.

  11. Three-dimensional model of the late Cenozoic history of the Death Valley region, southeastern California

    Science.gov (United States)

    Serpa, Laura; Pavlis, Terry L.

    1996-12-01

    The accumulation of a large database on the timing and kinematics of late Cenozoic deformation in the Death Valley region of southeastern California indicates a complex three-dimensional history. On the basis of paleogeographic reconstructions we suggest the system was initiated as a localized pull-apart between two conjugate strike-slip faults, the Garlock and Furnace Creek faults, and evolved into a system characterized by distributed transtension related to the eastern California shear zone. Our reconstructions differ from previous models in the incorporation of significant vertical axis rotations of a number of crustal blocks to explain paleomagnetic data from the region. The model may resolve (1) a long-standing problem of the eastern termination of the Garlock fault which is explained here as a complex system of splays that initially terminated in the pull-apart between the Furnace Creek and Garlock systems; and (2) the complex architecture of the Black Mountains which is explained here in terms of initial extreme attenuation between the Garlock and Furnace Creek systems with overprinting by a fold and normal fault system that operated simultaneously as a result of distributed transtension. This model suggests much of the displacement field is taken up in rotations and translations, and the actual crustal thinning in our model is relatively small (50-66% of original thickness).

  12. Towards three-dimensional optical metamaterials

    Science.gov (United States)

    Tanaka, Takuo; Ishikawa, Atsushi

    2017-12-01

    Metamaterials have opened up the possibility of unprecedented and fascinating concepts and applications in optics and photonics. Examples include negative refraction, perfect lenses, cloaking, perfect absorbers, and so on. Since these metamaterials are man-made materials composed of sub-wavelength structures, their development strongly depends on the advancement of micro- and nano-fabrication technologies. In particular, the realization of three-dimensional metamaterials is one of the big challenges in this research field. In this review, we describe recent progress in the fabrication technologies for three-dimensional metamaterials, as well as proposed applications.

  13. Towards three-dimensional optical metamaterials.

    Science.gov (United States)

    Tanaka, Takuo; Ishikawa, Atsushi

    2017-01-01

    Metamaterials have opened up the possibility of unprecedented and fascinating concepts and applications in optics and photonics. Examples include negative refraction, perfect lenses, cloaking, perfect absorbers, and so on. Since these metamaterials are man-made materials composed of sub-wavelength structures, their development strongly depends on the advancement of micro- and nano-fabrication technologies. In particular, the realization of three-dimensional metamaterials is one of the big challenges in this research field. In this review, we describe recent progress in the fabrication technologies for three-dimensional metamaterials, as well as proposed applications.

  14. Fabrication of malleable three-dimensional-printed customized bolus using three-dimensional scanner.

    Directory of Open Access Journals (Sweden)

    Jae Won Park

    Full Text Available A three-dimensional (3D-printed customized bolus (3D bolus can be used for radiotherapy application to irregular surfaces. However, bolus fabrication based on computed tomography (CT scans is complicated and also delivers unwanted irradiation. Consequently, we fabricated a bolus using a 3D scanner and evaluated its efficacy. The head of an Alderson Rando phantom was scanned with a 3D scanner. The 3D surface data were exported and reconstructed with Geomagic Design X software. A 3D bolus of 5-mm thickness designed to fit onto the nose was printed with the use of rubber-like printing material, and a radiotherapy plan was developed. We successfully fabricated the customized 3D bolus, and further, a CT simulation indicated an acceptable fit of the 3D bolus to the nose. There was no air gap between the bolus and the phantom surface. The percent depth dose (PDD curve of the phantom with the 3D bolus showed an enhanced surface dose when compared with that of the phantom without the bolus. The PDD of the 3D bolus was comparable with that of a commercial superflab bolus. The radiotherapy plan considering the 3D bolus showed improved target coverage when compared with that without the bolus. Thus, we successfully fabricated a customized 3D bolus for an irregular surface using a 3D scanner instead of a CT scanner.

  15. Surface image of herniated disc on three-dimensional CT

    Energy Technology Data Exchange (ETDEWEB)

    Chung, Kyung Il; Jeon, Chang Hoon; Kim, Sun Yong; Kim, Ok Hwa; Suh, Jung Ho [Ajou Univ. College of Medicine, Suwon(Korea, Republic of)

    1996-03-01

    To evaluate surface configuration of herniated disc on three-dimensional CT. Three dimensional surface images reconstructed from CT scans(1 mm thick) of 24 surgically confirmed herniated discs in 23 patients were reviewed. Disc surface was classified into peripheral and central zones in contact with consecutive peripheral ring and central endplate. Surface irregularity was categorized into two types(local and general). The incidence, size, and extent of local irregularity were observed. General irregularity incidence and severity ranges in 4 grades, and peripheral width were evaluated. The findings were correlated with discography. Local irregularity compatible with anulus tear in discography was shown in all. It was large(13/24) and mainly peripheral tract extending to disc margin in protrusion(3/5) and sequestration(5/7), and cleft encompassing central zone to disc margin in extrusion(9/12). General irregularity was predominantly grade 3(15/22) and was shown in all except in 2 protrusions. Peripheral width was 0.56 of central radius. Extrusion in herniated disc shows characteristic cleft encompassing central zone to disc margin whereas sequestration or protrusion displays tract extending from peripheral zone to disc margin. Thus, three dimensional surface imaging may aid the diagnosis, follow-up, prediction, and treatment of herniated disc.

  16. Quantitative three-dimensional modeling of zeotile through discrete electron tomography.

    Science.gov (United States)

    Bals, Sara; Batenburg, K Joost; Liang, Duoduo; Lebedev, Oleg; Van Tendeloo, Gustaaf; Aerts, Alexander; Martens, Johan A; Kirschhock, Christine E A

    2009-04-08

    Discrete electron tomography is a new approach for three-dimensional reconstruction of nanoscale objects. The technique exploits prior knowledge of the object to be reconstructed, which results in an improvement of the quality of the reconstructions. Through the combination of conventional transmission electron microscopy and discrete electron tomography with a model-based approach, quantitative structure determination becomes possible. In the present work, this approach is used to unravel the building scheme of Zeotile-4, a silica material with two levels of structural order. The layer sequence of slab-shaped building units could be identified. Successive layers were found to be related by a rotation of 120 degrees, resulting in a hexagonal space group. The Zeotile-4 material is a demonstration of the concept of successive structuring of silica at two levels. At the first level, the colloid chemical properties of Silicalite-1 precursors are exploited to create building units with a slablike geometry. At the second level, the slablike units are tiled using a triblock copolymer to serve as a mesoscale structuring agent.

  17. Three-dimensional characterization of stress corrosion cracks

    DEFF Research Database (Denmark)

    Lozano-Perez, S.; Rodrigo, P.; Gontard, Lionel Cervera

    2011-01-01

    the best spatial resolution. To illustrate the power of these techniques, different parts of dominant stress corrosion cracks in Ni-alloys and stainless steels have been reconstructed in 3D. All relevant microstructural features can now be studied in detail and its relative orientation respect......Understanding crack propagation and initiation is fundamental if stress corrosion cracking (SCC) mechanisms are to be understood. However, cracking is a three-dimensional (3D) phenomenon and most characterization techniques are restricted to two-dimensional (2D) observations. In order to overcome...

  18. Wave field restoration using three-dimensional Fourier filtering method.

    Science.gov (United States)

    Kawasaki, T; Takai, Y; Ikuta, T; Shimizu, R

    2001-11-01

    A wave field restoration method in transmission electron microscopy (TEM) was mathematically derived based on a three-dimensional (3D) image formation theory. Wave field restoration using this method together with spherical aberration correction was experimentally confirmed in through-focus images of amorphous tungsten thin film, and the resolution of the reconstructed phase image was successfully improved from the Scherzer resolution limit to the information limit. In an application of this method to a crystalline sample, the surface structure of Au(110) was observed in a profile-imaging mode. The processed phase image showed quantitatively the atomic relaxation of the topmost layer.

  19. Plenoptic Imaging of a Three Dimensional Cold Atom Cloud

    Science.gov (United States)

    Lott, Gordon

    2017-04-01

    A plenoptic imaging system is capable of sampling the rays of light in a volume, both spatially and angularly, providing information about the three dimensional (3D) volume being imaged. The extraction of the 3D structure of a cold atom cloud is demonstrated, using a single plenoptic camera and a single image. The reconstruction is tested against a reference image and the results discussed along with the capabilities and limitations of the imaging system. This capability is useful when the 3D distribution of the atoms is desired, such as determining the shape of an atom trap, particularly when there is limited optical access. Gratefully acknowledge support from AFRL.

  20. Three-dimensional illumination procedure for photodynamic therapy of dermatology

    Science.gov (United States)

    Hu, Xiao-ming; Zhang, Feng-juan; Dong, Fei; Zhou, Ya

    2014-09-01

    Light dosimetry is an important parameter that affects the efficacy of photodynamic therapy (PDT). However, the irregular morphologies of lesions complicate lesion segmentation and light irradiance adjustment. Therefore, this study developed an illumination demo system comprising a camera, a digital projector, and a computing unit to solve these problems. A three-dimensional model of a lesion was reconstructed using the developed system. Hierarchical segmentation was achieved with the superpixel algorithm. The expected light dosimetry on the targeted lesion was achieved with the proposed illumination procedure. Accurate control and optimization of light delivery can improve the efficacy of PDT.

  1. Surgical accuracy of three-dimensional virtual planning

    DEFF Research Database (Denmark)

    Stokbro, Kasper; Aagaard, Esben; Torkov, Peter

    2016-01-01

    This retrospective study evaluated the precision and positional accuracy of different orthognathic procedures following virtual surgical planning in 30 patients. To date, no studies of three-dimensional virtual surgical planning have evaluated the influence of segmentation on positional accuracy...... and transverse expansion. Furthermore, only a few have evaluated the precision and accuracy of genioplasty in placement of the chin segment. The virtual surgical plan was compared with the postsurgical outcome by using three linear and three rotational measurements. The influence of maxillary segmentation...

  2. Quantum tunneling from three-dimensional black holes

    International Nuclear Information System (INIS)

    Ejaz, Asiya; Gohar, H.; Lin, Hai; Saifullah, K.; Yau, Shing-Tung

    2013-01-01

    We study Hawking radiation from three-dimensional black holes. For this purpose the emission of charged scalar and charged fermionic particles is investigated from charged BTZ black holes, with and without rotation. We use the quantum tunneling approach incorporating WKB approximation and spacetime symmetries. Another class of black holes which is asymptotic to a Sol three-manifold has also been investigated. This procedure gives us the tunneling probability of outgoing particles, and we compute the temperature of the radiation for these black holes. We also consider the quantum tunneling of particles from black hole asymptotic to Sol geometry

  3. Three-dimensional fractional topological insulators in coupled Rashba layers

    Science.gov (United States)

    Volpez, Yanick; Loss, Daniel; Klinovaja, Jelena

    2017-08-01

    We propose a model of three-dimensional topological insulators consisting of weakly coupled electron- and hole-gas layers with Rashba spin-orbit interaction stacked along a given axis. We show that in the presence of strong electron-electron interactions the system realizes a fractional strong topological insulator, where the rotational symmetry and condensation energy arguments still allow us to treat the problem as quasi-one-dimensional with bosonization techniques. We also show that if Rashba and Dresselhaus spin-orbit interaction terms are equally strong, by doping the system with magnetic impurities, one can bring it into the Weyl semimetal phase.

  4. Three-dimensional nonlinear waves under spatial confinement

    OpenAIRE

    Azhand, Arash

    2016-01-01

    The aim of my thesis is to study the evolution of scroll waves under spatial confinement both experimentally as well as numerically. Scroll waves represent three-dimensional (3D) analogs of spiral waves. In the simplest case, the central axis around which a scroll wave rotates is a straight line. The line is named the filament of the scroll wave, and each infinitesimal cross-section represents the core of a spiral wave. Two specific types of scroll waves are considered: (1) Straight scroll wa...

  5. Imaging unsteady three-dimensional transport phenomena

    Indian Academy of Sciences (India)

    2014-01-05

    Jan 5, 2014 ... The image data can be jointly analysed with the physical laws governing transport and principles of image formation. Hence, with the experiment suitably carried out, three-dimensional physical domains with unsteady processes can be accommodated. Optical methods promise to breach the holy grail of ...

  6. Three-Dimensional Printing Surgical Applications.

    Science.gov (United States)

    AlAli, Ahmad B; Griffin, Michelle F; Butler, Peter E

    2015-01-01

    Three-dimensional printing, a technology used for decades in the industrial field, gains a lot of attention in the medical field for its potential benefits. With advancement of desktop printers, this technology is accessible and a lot of research is going on in the medical field. To evaluate its application in surgical field, which may include but not limited to surgical planning, surgical education, implants, and prosthesis, which are the focus of this review. Research was conducted by searching PubMed, Web of science, and other reliable sources. We included original articles and excluded articles based on animals, those more than 10 years old, and those not in English. These articles were evaluated, and relevant studies were included in this review. Three-dimensional printing shows a potential benefit in surgical application. Printed implants were used in patient in a few cases and show successful results; however, longer follow-up and more trials are needed. Surgical and medical education is believed to be more efficient with this technology than the current practice. Printed surgical instrument and surgical planning are also believed to improve with three-dimensional printing. Three-dimensional printing can be a very powerful tool in the near future, which can aid the medical field that is facing a lot of challenges and obstacles. However, despite the reported results, further research on larger samples and analytical measurements should be conducted to ensure this technology's impact on the practice.

  7. Imaging unsteady three-dimensional transport phenomena

    Indian Academy of Sciences (India)

    2014-01-05

    Jan 5, 2014 ... physical domains with unsteady processes can be accommodated. Optical methods promise to breach the holy grail of measurements by extracting unsteady three-dimensional data in applications related to transport phenomena. Keywords. Optical measurement; fluid flow and transport; refractive index ...

  8. Three-dimensional chiral photonic superlattices.

    Science.gov (United States)

    Thiel, M; Fischer, H; von Freymann, G; Wegener, M

    2010-01-15

    We investigate three-dimensional photonic superlattices composed of polymeric helices in various spatial checkerboard-like arrangements. Depending on the relative phase shift and handedness of the chiral building blocks, different circular-dichroism resonances appear or are suppressed. Samples corresponding to four different configurations are fabricated by direct laser writing. The measured optical transmittance spectra are in good agreement with numerical calculations.

  9. Three dimensional electrochemical system for neurobiological studies

    DEFF Research Database (Denmark)

    Vazquez, Patricia; Dimaki, Maria; Svendsen, Winnie Edith

    2009-01-01

    In this work we report a novel three dimensional electrode array for electrochemical measurements in neuronal studies. The main advantage of working with these out-of-plane structures is the enhanced sensitivity of the system in terms of measuring electrochemical changes in the environment...

  10. Electron crystallography of three dimensional protein crystals

    NARCIS (Netherlands)

    Georgieva, Dilyana

    2008-01-01

    This thesis describes an investigation of the potential of electron diffraction for studying three dimensional sub-micro-crystals of proteins and pharmaceuticals. A prerequisite for using electron diffraction for structural studies is the predictable availability of tiny crystals. A method for

  11. Biomechanical comparison of rotational activities between anterior cruciate ligament- and posterior cruciate ligament-reconstructed patients.

    Science.gov (United States)

    Lim, Bee Oh; Shin, Han Sol; Lee, Yong Seuk

    2015-04-01

    The purpose of this study was to compare the early functional recovery using biomechanical properties between anterior cruciate ligament (ACL)- and posterior cruciate ligament (PCL)-reconstructed patients and to determine the biomechanical deficit of PCL-reconstructed patients compared to ACL-reconstructed patients. A motion analysis system was used to measure and calculate kinematic and kinetic data for 10 patients who underwent PCL-reconstructed patients [experimental group (group 1)], 10 ACL-reconstructed patients (group 2), and 10 healthy subjects (group 3) during 45°, 90°, 135°, and 180° cutting and turn running tasks. Groups 1 and 2 were assessed at 3 (return to daily activity) and 6 months (return to light sports) postoperatively. At 3 months postoperatively, compared to groups 2 and 3, group 1 showed a decrease in knee flexion angle, extension moment, valgus moment, external rotational moment, ground reaction force, and increased hamstring-quadriceps ratio. At 6 months postoperatively, results from group 1 resembled those of groups 2 and 3 over time. Patients who underwent PCL reconstruction showed some biomechanical deficits in performance of activities requiring rotation, compared to those who underwent ACL reconstruction. Therefore, the modification of a rehabilitation programme for patients who underwent PCL reconstruction would be necessary for improvement of the biomechanical properties during performance of dynamic activities. Case-control study, Level III.

  12. Three-dimensional patterning methods and related devices

    Energy Technology Data Exchange (ETDEWEB)

    Putnam, Morgan C.; Kelzenberg, Michael D.; Atwater, Harry A.; Boettcher, Shannon W.; Lewis, Nathan S.; Spurgeon, Joshua M.; Turner-Evans, Daniel B.; Warren, Emily L.

    2016-12-27

    Three-dimensional patterning methods of a three-dimensional microstructure, such as a semiconductor wire array, are described, in conjunction with etching and/or deposition steps to pattern the three-dimensional microstructure.

  13. Three-dimensional visualization of magnetic domain structure with strong uniaxial anisotropy via scanning hard X-ray microtomography

    Science.gov (United States)

    Suzuki, Motohiro; Kim, Kab-Jin; Kim, Sanghoon; Yoshikawa, Hiroki; Tono, Takayuki; Yamada, Kihiro T.; Taniguchi, Takuya; Mizuno, Hayato; Oda, Kent; Ishibashi, Mio; Hirata, Yuushou; Li, Tian; Tsukamoto, Arata; Chiba, Daichi; Ono, Teruo

    2018-03-01

    An X-ray tomographic technique was developed to investigate the internal magnetic domain structure in a micrometer-sized ferromagnetic sample. The technique is based on a scanning hard X-ray nanoprobe using X-ray magnetic circular dichroism (XMCD). From transmission XMCD images at the Gd L3 edge as a function of the sample rotation angle, the three-dimensional (3D) distribution of a single component of the magnetic vector in a GdFeCo microdisc was reconstructed with a spatial resolution of 360 nm, using a modified algebraic reconstruction algorithm. The method is applicable to practical magnetic materials and can be extended to 3D visualization of the magnetic domain formation process under external magnetic fields.

  14. Three-dimensional friction measurement during hip simulation.

    Directory of Open Access Journals (Sweden)

    Robert Sonntag

    Full Text Available Wear of total hip replacements has been the focus of many studies. However, frictional effects, such as high loading on intramodular connections or the interface to the bone, as well as friction associated squeaking have recently increased interest about the amount of friction that is generated during daily activities. The aim of this study was thus to establish and validate a three-dimensional friction setup under standardized conditions.A standard hip simulator was modified to allow for high precision measurements of small frictional effects in the hip during three-dimensional hip articulation. The setup was verified by an ideal hydrostatic bearing and validated with a static-load physical pendulum and an extension-flexion rotation with a dynamic load profile. Additionally, a pendulum model was proposed for screening measurement of frictional effects based on the damping behavior of the angular oscillation without the need for any force/moment transducer. Finally, three-dimensional friction measurements have been realized for ceramic-on-polyethylene bearings of three different sizes (28, 36 and 40 mm.A precision of less than 0.2 Nm during three-dimensional friction measurements was reported, while increased frictional torque (resultant as well as taper torque was measured for larger head diameters. These effects have been confirmed by simple pendulum tests and the theoretical model. A comparison with current literature about friction measurements is presented.This investigation of friction is able to provide more information about a field that has been dominated by the reduction of wear. It should be considered in future pre-clinical testing protocols given by international organizations of standardization.

  15. Three-dimensional microwave imaging for breast-cancer detection using the log-phase formulation

    DEFF Research Database (Denmark)

    Rubæk, Tonny; Meincke, Peter; Kim, Oleksiy S.

    2007-01-01

    The log-phase formulation is applied for the reconstruction of images from a simulation of a three-dimensional imaging system. By using this formulation, a clear improvement in the quality of the reconstructed images is achieved compared to the case in which the usual complex phasor notation is e...

  16. Three-dimensional MR imaging of the cerebrospinal system with the RARE technique

    International Nuclear Information System (INIS)

    Hennig, J.; Ott, D.; Ylayasski, J.

    1987-01-01

    Three-dimensional RARE myelography is a fast technique for high-resolution imaging of the cerebrospinal fluid. A data set with 1 x 1 x 1-mm resolution can be generated with a 12-minute acquisition time. Sophisticated three-dimensional display algorithms allow reconstruction of planes at arbitrary angles and full three-dimensional displays, which yield extremely useful information for neurosurgical planning. Additionally, the injection of contrast agent can be simulated on the computer and communication pathways between structures of interest can be found noninvasively

  17. Integrated three-dimensional display of MR, CT, and PET images of the brain

    International Nuclear Information System (INIS)

    Levin, D.N.; Herrmann, A.; Chen, G.T.Y.

    1988-01-01

    MR, CT, and PET studies depict complementary aspects of brain anatomy and function. The authors' own image-processing software and a Pixar image computer were used to create three-dimensional models of brain soft tissues from MR images, of the skull and calcifications from CT scans, and of brain metabolism from PET images. An image correlation program, based on surface fitting, was used for retrospective registration and merging of these three-dimensional models. The results are demonstrated in a video clip showing how the operator may rotate and perform electronic surgery on the integrated, multimodality three-dimensional model of each patient's brain

  18. Secure data storage by three-dimensional absorbers in highly scattering volume medium

    International Nuclear Information System (INIS)

    Matoba, Osamu; Matsuki, Shinichiro; Nitta, Kouichi

    2008-01-01

    A novel data storage in a volume medium with highly scattering coefficient is proposed for data security application. Three-dimensional absorbers are used as data. These absorbers can not be measured by interferometer when the scattering in a volume medium is strong enough. We present a method to reconstruct three-dimensional absorbers and present numerical results to show the effectiveness of the proposed data storage.

  19. Three-dimensional method for integrated transient analysis of reactor-piping systems

    International Nuclear Information System (INIS)

    Wang, C.Y.

    1981-01-01

    A three-dimensional method for integrated hydrodynamic, structural, and thermal analyses of reactor-piping systems is presented. The hydrodynamics are analyzed in a reference frame fixed to the piping and are treated with a two-dimensional Eulerian finite-difference technique. The structural responses are calculated with a three-dimensional co-rotational finite-element methodology. Interaction between fluid and structure is accounted for by iteratively enforcing the interface boundary conditions

  20. Three-dimensional imaging modalities in endodontics

    International Nuclear Information System (INIS)

    Mao, Teresa; Neelakantan, Prasanna

    2014-01-01

    Recent research in endodontics has highlighted the need for three-dimensional imaging in the clinical arena as well as in research. Three-dimensional imaging using computed tomography (CT) has been used in endodontics over the past decade. Three types of CT scans have been studied in endodontics, namely cone-beam CT, spiral CT, and peripheral quantitative CT. Contemporary endodontics places an emphasis on the use of cone-beam CT for an accurate diagnosis of parameters that cannot be visualized on a two-dimensional image. This review discusses the role of CT in endodontics, pertaining to its importance in the diagnosis of root canal anatomy, detection of peri-radicular lesions, diagnosis of trauma and resorption, presurgical assessment, and evaluation of the treatment outcome

  1. Three-dimensional Imaging, Visualization, and Display

    CERN Document Server

    Javidi, Bahram; Son, Jung-Young

    2009-01-01

    Three-Dimensional Imaging, Visualization, and Display describes recent developments, as well as the prospects and challenges facing 3D imaging, visualization, and display systems and devices. With the rapid advances in electronics, hardware, and software, 3D imaging techniques can now be implemented with commercially available components and can be used for many applications. This volume discusses the state-of-the-art in 3D display and visualization technologies, including binocular, multi-view, holographic, and image reproduction and capture techniques. It also covers 3D optical systems, 3D display instruments, 3D imaging applications, and details several attractive methods for producing 3D moving pictures. This book integrates the background material with new advances and applications in the field, and the available online supplement will include full color videos of 3D display systems. Three-Dimensional Imaging, Visualization, and Display is suitable for electrical engineers, computer scientists, optical e...

  2. Arching in three-dimensional clogging

    Directory of Open Access Journals (Sweden)

    Török János

    2017-01-01

    Full Text Available Arching in dry granular material is a long established concept, however it remains still an open question how three-dimensional orifices clog. We investigate by means of numerical simulations and experimental data how the outflow creates a blocked configuration of particles. We define the concave surface of the clogged dome by two independent methods (geometric and density based. The average shape of the cupola for spheres is almost a hemisphere but individual samples have large holes in the structure indicating a blocked state composed of two-dimensional force chains rather than three-dimensional objects. The force chain structure justifies this assumption. For long particles the clogged configurations display large variations, and in certain cases the empty region reaches a height of 5 hole diameters. These structures involve vertical walls consisting of horizontally placed stable stacking of particles.

  3. Three dimensional digital imaging of environmental data

    International Nuclear Information System (INIS)

    Nichols, R.L.; Eddy, C.A.

    1991-01-01

    The Environmental Sciences Section (ESS) of the Savannah River Laboratory has recently acquired the computer hardware (Silicon Graphics Personal Iris Workstations) and software (Dynamic Graphics, Interactive Surface and Volume Modeling) to perform three dimensional analysis of hydrogeologic data. Three dimensional digital imaging of environmental data is a powerful technique that can be used to incorporate field, analytical, and modeling results from geologic, hydrologic, ecologic, and chemical studies into a comprehensive model for visualization and interpretation. This report covers the contamination of four different sites of the Savannah River Plant. Each section of this report has a computer graphic display of the concentration of contamination in the groundwater and/or sediments of each site

  4. Arching in three-dimensional clogging

    Science.gov (United States)

    Török, János; Lévay, Sára; Szabó, Balázs; Somfai, Ellák; Wegner, Sandra; Stannarius, Ralf; Börzsönyi, Tamás

    2017-06-01

    Arching in dry granular material is a long established concept, however it remains still an open question how three-dimensional orifices clog. We investigate by means of numerical simulations and experimental data how the outflow creates a blocked configuration of particles. We define the concave surface of the clogged dome by two independent methods (geometric and density based). The average shape of the cupola for spheres is almost a hemisphere but individual samples have large holes in the structure indicating a blocked state composed of two-dimensional force chains rather than three-dimensional objects. The force chain structure justifies this assumption. For long particles the clogged configurations display large variations, and in certain cases the empty region reaches a height of 5 hole diameters. These structures involve vertical walls consisting of horizontally placed stable stacking of particles.

  5. Three dimensional contact/impact methodology

    International Nuclear Information System (INIS)

    Kulak, R.F.

    1987-01-01

    The simulation of three-dimensional interface mechanics between reactor components and structures during static contact or dynamic impact is necessary to realistically evaluate their structural integrity to off-normal loads. In our studies of postulated core energy release events, we have found that significant structure-structure interactions occur in some reactor vessel head closure designs and that fluid-structure interactions occur within the reactor vessel. Other examples in which three-dimensional interface mechanics play an important role are: (1) impact response of shipping casks containing spent fuel, (2) whipping pipe impact on reinforced concrete panels or pipe-to-pipe impact after a pipe break, (3) aircraft crash on secondary containment structures, (4) missiles generated by turbine failures or tornados, and (5) drops of heavy components due to lifting accidents. The above is a partial list of reactor safety problems that require adequate treatment of interface mechanics and are discussed in this paper

  6. THREE DIMENSIONAL GRAPHICAL REPRESENTATION OF QUALITY

    Directory of Open Access Journals (Sweden)

    Vineet V. Kumar

    2014-03-01

    Full Text Available Quality is an important aspect for every firm in modern era of competition. Every product has tough competition in terms of market reach. The factor, which actually makes any product long run in market, is quality and hence quality is the stepping-stone for success of any firm. For everyone meaning of quality is different. We have seen several economists who have defined quality by considering different factors, but what all of them have common in them is Customer satisfaction. Customer satisfaction is the ultimate result of quality. In three-dimensional graphical representation of quality, optimum quality is obtained by using three-dimensional graph by considering some important factors governing quality of any product, limiting factor, and customer satisfaction.

  7. Three-dimensional imaging modalities in endodontics

    Energy Technology Data Exchange (ETDEWEB)

    Mao, Teresa; Neelakantan, Prasanna [Dept. of Conservative Dentistry and Endodontics, Saveetha Dental College and Hospitals, Saveetha University, Chennai (India)

    2014-09-15

    Recent research in endodontics has highlighted the need for three-dimensional imaging in the clinical arena as well as in research. Three-dimensional imaging using computed tomography (CT) has been used in endodontics over the past decade. Three types of CT scans have been studied in endodontics, namely cone-beam CT, spiral CT, and peripheral quantitative CT. Contemporary endodontics places an emphasis on the use of cone-beam CT for an accurate diagnosis of parameters that cannot be visualized on a two-dimensional image. This review discusses the role of CT in endodontics, pertaining to its importance in the diagnosis of root canal anatomy, detection of peri-radicular lesions, diagnosis of trauma and resorption, presurgical assessment, and evaluation of the treatment outcome.

  8. Three-dimensional imaging modalities in endodontics

    Science.gov (United States)

    Mao, Teresa

    2014-01-01

    Recent research in endodontics has highlighted the need for three-dimensional imaging in the clinical arena as well as in research. Three-dimensional imaging using computed tomography (CT) has been used in endodontics over the past decade. Three types of CT scans have been studied in endodontics, namely cone-beam CT, spiral CT, and peripheral quantitative CT. Contemporary endodontics places an emphasis on the use of cone-beam CT for an accurate diagnosis of parameters that cannot be visualized on a two-dimensional image. This review discusses the role of CT in endodontics, pertaining to its importance in the diagnosis of root canal anatomy, detection of peri-radicular lesions, diagnosis of trauma and resorption, presurgical assessment, and evaluation of the treatment outcome. PMID:25279337

  9. Geometric actions for three-dimensional gravity

    Science.gov (United States)

    Barnich, G.; González, H. A.; Salgado-Rebolledo, P.

    2018-01-01

    The solution space of three-dimensional asymptotically anti-de Sitter or flat Einstein gravity is given by the coadjoint representation of two copies of the Virasoro group in the former and the centrally extended BMS3 group in the latter case. Dynamical actions that control these solution spaces are usually constructed by starting from the Chern–Simons formulation and imposing all boundary conditions. In this note, an alternative route is followed. We study in detail how to derive these actions from a group-theoretical viewpoint by constructing geometric actions for each of the coadjoint orbits, including the appropriate Hamiltonians. We briefly sketch relevant generalizations and potential applications beyond three-dimensional gravity.

  10. SNAP - a three dimensional neutron diffusion code

    International Nuclear Information System (INIS)

    McCallien, C.W.J.

    1993-02-01

    This report describes a one- two- three-dimensional multi-group diffusion code, SNAP, which is primarily intended for neutron diffusion calculations but can also carry out gamma calculations if the diffusion approximation is accurate enough. It is suitable for fast and thermal reactor core calculations and for shield calculations. SNAP can solve the multi-group neutron diffusion equations using finite difference methods. The one-dimensional slab, cylindrical and spherical geometries and the two-dimensional case are all treated as simple special cases of three-dimensional geometries. Numerous reflective and periodic symmetry options are available and may be used to reduce the number of mesh points necessary to represent the system. Extrapolation lengths can be specified at internal and external boundaries. (Author)

  11. Three-dimensional display of document set

    Science.gov (United States)

    Lantrip, David B [Oxnard, CA; Pennock, Kelly A [Richland, WA; Pottier, Marc C [Richland, WA; Schur, Anne [Richland, WA; Thomas, James J [Richland, WA; Wise, James A [Richland, WA; York, Jeremy [Bothell, WA

    2009-06-30

    A method for spatializing text content for enhanced visual browsing and analysis. The invention is applied to large text document corpora such as digital libraries, regulations and procedures, archived reports, and the like. The text content from these sources may be transformed to a spatial representation that preserves informational characteristics from the documents. The three-dimensional representation may then be visually browsed and analyzed in ways that avoid language processing and that reduce the analysts' effort.

  12. Three-dimensional simulation of vortex breakdown

    Science.gov (United States)

    Kuruvila, G.; Salas, M. D.

    1990-01-01

    The integral form of the complete, unsteady, compressible, three-dimensional Navier-Stokes equations in the conservation form, cast in generalized coordinate system, are solved, numerically, to simulate the vortex breakdown phenomenon. The inviscid fluxes are discretized using Roe's upwind-biased flux-difference splitting scheme and the viscous fluxes are discretized using central differencing. Time integration is performed using a backward Euler ADI (alternating direction implicit) scheme. A full approximation multigrid is used to accelerate the convergence to steady state.

  13. Three-Dimensional Dynamic Loading of Sand

    Science.gov (United States)

    2011-02-01

    oading conditions exist at the bulk scale, and exam ples include planetary impact and crater formation, tectonic plate movement , ballistic im pact and...found further way from an impact event, where the bulk material does not necessarily experience uniform loading in excess of the Hugoniot elastic li...either as a collection of quartz spheres in a three-dimensional rectilinear dom ain for t he mesoscale simulations or as a single representative material

  14. Three-dimensional broadband tunable terahertz metamaterials

    DEFF Research Database (Denmark)

    Fan, Kebin; Strikwerda, Andrew; Zhang, Xin

    2013-01-01

    We present optically tunable magnetic three-dimensional (3D) metamaterials at terahertz (THz) frequencies which exhibit a tuning range of ~30% of the resonance frequency. This is accomplished by fabricating 3D array structures consisting of double-split-ring resonators (DSRRs) on silicon on sapph...... as verified through electromagnetic simulations and parameter retrieval. Our approach extends dynamic metamaterial tuning to magnetic control, and may find applications in switching and modulation, polarization control, or tunable perfect absorbers....

  15. Three-Dimensional Ocean Noise Modeling

    Science.gov (United States)

    2015-03-01

    realistic and complex three-dimensional bathymetry. This is achieved by using a parabolic equation [PE) propagation model and the reciprocity principle...explain the horizontal noise directionality observed in the Tonga Trench [Barclay, 2014], which was found not to be a 3D effect, but rather due to...modeled noise arriving on the axis of the canyon has significantly perturbed zero-crossings when compared to the equivalent Nx2D result. Theoretical

  16. Three-dimensional accelerating electromagnetic waves.

    Science.gov (United States)

    Bandres, Miguel A; Alonso, Miguel A; Kaminer, Ido; Segev, Mordechai

    2013-06-17

    We present a general theory of three-dimensional non-paraxial spatially-accelerating waves of the Maxwell equations. These waves constitute a two-dimensional structure exhibiting shape-invariant propagation along semicircular trajectories. We provide classification and characterization of possible shapes of such beams, expressed through the angular spectra of parabolic, oblate and prolate spheroidal fields. Our results facilitate the design of accelerating beams with novel structures, broadening scope and potential applications of accelerating beams.

  17. Multiparallel Three-Dimensional Optical Microscopy

    Science.gov (United States)

    Nguyen, Lam K.; Price, Jeffrey H.; Kellner, Albert L.; Bravo-Zanoquera, Miguel

    2010-01-01

    Multiparallel three-dimensional optical microscopy is a method of forming an approximate three-dimensional image of a microscope sample as a collection of images from different depths through the sample. The imaging apparatus includes a single microscope plus an assembly of beam splitters and mirrors that divide the output of the microscope into multiple channels. An imaging array of photodetectors in each channel is located at a different distance along the optical path from the microscope, corresponding to a focal plane at a different depth within the sample. The optical path leading to each photodetector array also includes lenses to compensate for the variation of magnification with distance so that the images ultimately formed on all the photodetector arrays are of the same magnification. The use of optical components common to multiple channels in a simple geometry makes it possible to obtain high light-transmission efficiency with an optically and mechanically simple assembly. In addition, because images can be read out simultaneously from all the photodetector arrays, the apparatus can support three-dimensional imaging at a high scanning rate.

  18. Three-Dimensional Audio Client Library

    Science.gov (United States)

    Rizzi, Stephen A.

    2005-01-01

    The Three-Dimensional Audio Client Library (3DAudio library) is a group of software routines written to facilitate development of both stand-alone (audio only) and immersive virtual-reality application programs that utilize three-dimensional audio displays. The library is intended to enable the development of three-dimensional audio client application programs by use of a code base common to multiple audio server computers. The 3DAudio library calls vendor-specific audio client libraries and currently supports the AuSIM Gold-Server and Lake Huron audio servers. 3DAudio library routines contain common functions for (1) initiation and termination of a client/audio server session, (2) configuration-file input, (3) positioning functions, (4) coordinate transformations, (5) audio transport functions, (6) rendering functions, (7) debugging functions, and (8) event-list-sequencing functions. The 3DAudio software is written in the C++ programming language and currently operates under the Linux, IRIX, and Windows operating systems.

  19. Three dimensional illustrating - three-dimensional vision and deception of sensibility

    Directory of Open Access Journals (Sweden)

    Anita Gánóczy

    2009-03-01

    Full Text Available The wide-spread digital photography and computer use gave the opportunity for everyone to make three-dimensional pictures and to make them public. The new opportunities with three-dimensional techniques give chance for the birth of new artistic photographs. We present in detail the biological roots of three-dimensional visualization, the phenomena of movement parallax, which can be used efficiently in making three-dimensional graphics, the Zöllner- and Corridor-illusion. There are present in this paper the visual elements, which contribute to define a plane two-dimensional image in three-dimension: coherent lines, the covering, the measurement changes, the relative altitude state, the abatement of detail profusion, the shadings and the perspective effects of colors.

  20. Three-dimensional analysis of craniofacial bones using three-dimensional computer tomography

    International Nuclear Information System (INIS)

    Ono, Ichiro; Ohura, Takehiko; Kimura, Chu

    1989-01-01

    Three-dimensional computer tomography (3DCT) was performed in patients with various diseases to visualize stereoscopically the deformity of the craniofacial bones. The data obtained were analyzed by the 3DCT analyzing system. A new coordinate system was established using the median sagittal plane of the face (a plane passing through sella, nasion and basion) on the three-dimensional image. Three-dimensional profilograms were prepared for detailed analysis of the deformation of craniofacial bones for cleft lip and palate, mandibular prognathia and hemifacial microsomia. For patients, asymmetry in the frontal view and twist-formed complicated deformities were observed, as well as deformity of profiles in the anteroposterior and up-and-down directions. A newly developed technique allows three-dimensional visualization of changes in craniofacial deformity. It would aid in determining surgical strategy, including crani-facial surgery and maxillo-facial surgery, and in evaluating surgical outcome. (N.K.)

  1. Three-dimensional analysis of craniofacial bones using three-dimensional computer tomography

    Energy Technology Data Exchange (ETDEWEB)

    Ono, Ichiro; Ohura, Takehiko; Kimura, Chu (Hokkaido Univ., Sapporo (Japan). School of Medicine) (and others)

    1989-08-01

    Three-dimensional computer tomography (3DCT) was performed in patients with various diseases to visualize stereoscopically the deformity of the craniofacial bones. The data obtained were analyzed by the 3DCT analyzing system. A new coordinate system was established using the median sagittal plane of the face (a plane passing through sella, nasion and basion) on the three-dimensional image. Three-dimensional profilograms were prepared for detailed analysis of the deformation of craniofacial bones for cleft lip and palate, mandibular prognathia and hemifacial microsomia. For patients, asymmetry in the frontal view and twist-formed complicated deformities were observed, as well as deformity of profiles in the anteroposterior and up-and-down directions. A newly developed technique allows three-dimensional visualization of changes in craniofacial deformity. It would aid in determining surgical strategy, including crani-facial surgery and maxillo-facial surgery, and in evaluating surgical outcome. (N.K.).

  2. Three-dimensional propagation in near-field tomographic X-ray phase retrieval

    International Nuclear Information System (INIS)

    Ruhlandt, Aike; Salditt, Tim

    2016-01-01

    An extension of phase retrieval algorithms for near-field X-ray (propagation) imaging to three dimensions is presented, enhancing the quality of the reconstruction by exploiting previously unused three-dimensional consistency constraints. This paper presents an extension of phase retrieval algorithms for near-field X-ray (propagation) imaging to three dimensions, enhancing the quality of the reconstruction by exploiting previously unused three-dimensional consistency constraints. The approach is based on a novel three-dimensional propagator and is derived for the case of optically weak objects. It can be easily implemented in current phase retrieval architectures, is computationally efficient and reduces the need for restrictive prior assumptions, resulting in superior reconstruction quality

  3. Three-dimensional propagation in near-field tomographic X-ray phase retrieval

    Energy Technology Data Exchange (ETDEWEB)

    Ruhlandt, Aike, E-mail: aruhlan@gwdg.de; Salditt, Tim [Institut für Röntgenphysik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, Göttingen (Germany)

    2016-01-29

    An extension of phase retrieval algorithms for near-field X-ray (propagation) imaging to three dimensions is presented, enhancing the quality of the reconstruction by exploiting previously unused three-dimensional consistency constraints. This paper presents an extension of phase retrieval algorithms for near-field X-ray (propagation) imaging to three dimensions, enhancing the quality of the reconstruction by exploiting previously unused three-dimensional consistency constraints. The approach is based on a novel three-dimensional propagator and is derived for the case of optically weak objects. It can be easily implemented in current phase retrieval architectures, is computationally efficient and reduces the need for restrictive prior assumptions, resulting in superior reconstruction quality.

  4. Three-dimensional object recognition via integral imaging and scale invariant feature transform

    Science.gov (United States)

    Yi, Faliu; Moon, Inkyu

    2014-06-01

    We propose a three-dimensional (3D) object recognition approach via computational integral imaging and scale invariant feature transform (SIFT) that can be invariance to object changes in illumination, scale, rotation and affine. Usually, the matching between features extracted in reference object and that in computationally reconstructed image should be done for 3D object recognition. However, this process needs to alternately illustrate all of the depth images first which will affect the recognition efficiency. Considering that there are a set of elemental images with different viewpoint in integral imaging, we first recognize the object in 2D image by using five elemental images and then choose one elemental image with the most matching points from the five images. This selected image will include more information related to the reference object. Finally, we can use this selected elemental image and its neighboring elemental images which should also contain much reference object information to calculate the disparity with SIFT algorithm. Consequently, the depth of the 3D object can be achieved with stereo camera theory and the recognized 3D object can be reconstructed in computational integral imaging. This method sufficiently utilizes the different information provided by elemental images and the robust feature extraction SIFT algorithm to recognize 3D objects.

  5. Three-dimensional positioning with optofluidic microscope

    DEFF Research Database (Denmark)

    Vig, Asger Laurberg; Marie, Rodolphe; Jensen, Eric

    2010-01-01

    This paper reports on-chip based optical detection with three-dimensional spatial resolution by integration of an optofluidic microscope (OFM) in a microfluidic pinched flow fractionation (PFF) separation device. This setup also enables on-chip particle image velocimetry (PIV). The position...... a conventional fluorescence microscope as readout. The size separated microspheres are detected by OFM with an accuracy of ≤ 0.92 μm. The position in the height of the channel and the velocity of the separated microspheres are detected with an accuracy of 1.4 μm and 0.08 mm/s respectively. Throughout...

  6. Three Dimensional Double Layers in Magnetized Plasmas

    DEFF Research Database (Denmark)

    Jovanovic, D.; Lynov, Jens-Peter; Michelsen, Poul

    1982-01-01

    Experimental results are presented which demonstrate the formation of fully three dimensional double layers in a magnetized plasma. The measurements are performed in a magnetized stationary plasma column with radius 1.5 cm. Double layers are produced by introducing an electron beam with radius 0.......4 cm along the magnetic field from one end of the column. The voltage drop across the double layer is found to be determined by the energy of the incoming electron beam. In general we find that the width of the double layer along the external magnetic field is determined by plasma density and beam...

  7. Three-dimensional teletherapy treatment planning

    International Nuclear Information System (INIS)

    Panthaleon van Eck, R.B. van.

    1986-01-01

    This thesis deals with physical/mathematical backgrounds of computerized teletherapy treatment planning. The subjects discussed in this thesis can be subdivided into three main categories: a) Three-dimensional treatment planning. A method is evaluated which can be used for the purpose of simulation and optimization of dose distributions in three dimensions. b) The use of Computed Tomography. The use of patient information obtained from Computed Tomography for the purpose of dose computations is evaluated. c) Dose computational models for photon- and electron beams. Models are evaluated which provide information regarding the way in which the radiation dose is distributed in the patient (viz. is absorbed and/or dispersed). (Auth.)

  8. Creating three-dimensional thermal maps

    CSIR Research Space (South Africa)

    Price

    2011-11-01

    Full Text Available stream_source_info Price_2011.pdf.txt stream_content_type text/plain stream_size 30895 Content-Encoding ISO-8859-1 stream_name Price_2011.pdf.txt Content-Type text/plain; charset=ISO-8859-1 Creating Three...-Dimensional Thermal Maps Mathew Price Cogency cc Cape Town Email: mathew@cogency.co.za Jeremy Green CSIR Centre for Mining Innovation Johannesburg Email: jgreen@csir.co.za John Dickens CSIR Centre for Mining Innovation Johannesburg Email: jdickens...

  9. Three-dimensional cooling of muons

    CERN Document Server

    Vsevolozhskaya, T A

    2000-01-01

    The simultaneous ionization cooling of muon beams in all three - the longitudinal and two transverse - directions is considered in a scheme, based on bent lithium lenses with dipole constituent of magnetic field in them, created by a special configuration of current-carrying rod. An analysis of three-dimensional cooling is performed with the use of kinetic equation method. Results of numerical calculation for a specific beam line configuration are presented together with results of computer simulation using the Moliere distribution to describe the Coulomb scattering and the Vavilov distribution used to describe the ionization loss of energy.

  10. Three-dimensional radiation treatment planning

    International Nuclear Information System (INIS)

    Mohan, R.

    1989-01-01

    A major aim of radiation therapy is to deliver sufficient dose to the tumour volume to kill the cancer cells while sparing the nearby health organs to prevent complications. With the introduction of devices such as CT and MR scanners, radiation therapy treatment planners have access to full three-dimensional anatomical information to define, simulate, and evaluate treatments. There are a limited number of prototype software systems that allow 3D treatment planning currently in use. In addition, there are more advanced tools under development or still in the planning stages. They require sophisticated graphics and computation equipment, complex physical and mathematical algorithms, and new radiation treatment machines that deliver dose very precisely under computer control. Components of these systems include programs for the identification and delineation of the anatomy and tumour, the definition of radiation beams, the calculation of dose distribution patterns, the display of dose on 2D images and as three dimensional surfaces, and the generation of computer images to verify proper patient positioning in treatment. Some of these functions can be performed more quickly and accurately if artificial intelligence or expert systems techniques are employed. 28 refs., figs

  11. The Three-Dimensional Universe with Gaia

    Science.gov (United States)

    Turon, C.; O'Flaherty, K. S.; Perryman, M. A. C.

    2005-01-01

    "The Three-Dimensional Universe with Gaia" symposium was hosted by the Observatoire de Paris (Meudon), France, from 4 to 7 October 2004. The date chosen for this symposium corresponded to the end of the definition phase of Gaia, a cornerstone mission of the European Space Agency. The purposes of this symposium were: (1) to present to the scientific community the design chosen for the mission, the final characteristics and performances, and to update the resulting scientific case; (2) to bring to the attention of the scientific community the extraordinary potential of Gaia and to share with the younger generation of scientists the expertise acquired during the preparation phases of the Gaia mission, and during all phases of the Hipparcos mission; (3) to organise the next phase of scientific preparation of the mission, in particular the data reduction which constitutes a major challenge with a petabyte of interconnected data which has to be treated in a global and iterative manner, and to prepare for the scientific exploitation of the data. The symposium was open to scientists working on the preparation of Gaia and to the large community interested in using the data from the mission. The proceedings of the symposium are published by the European Space Agency as ESA SP-576: "The Three-Dimensional Universe with Gaia". These proceedings contain invited and contributed papers for six sessions covering technical and scientific aspects of the mission.

  12. Three-dimensional structure of the γ-secretase complex

    International Nuclear Information System (INIS)

    Ogura, Toshihiko; Mio, Kazuhiro; Hayashi, Ikuo; Miyashita, Hiroyuki; Fukuda, Rie; Kopan, Raphael; Kodama, Tatsuhiko; Hamakubo, Takao; Iwastubo, Takeshi; Tomita, Taisuke; Sato, Chikara

    2006-01-01

    γ-Secretase belongs to an atypical class of aspartic proteases that hydrolyzes peptide bonds within the transmembrane domain of substrates, including amyloid-β precursor protein and Notch. γ-Secretase is comprised of presenilin, nicastrin, APH-1, and PEN-2 which form a large multimeric membrane protein complex, the three-dimensional structure of which is unknown. To gain insight into the structure of this complex enzyme, we purified functional γ-secretase complex reconstituted in Sf9 cells and analyzed it using negative stain electron microscopy and 3D reconstruction techniques. Analysis of 2341 negatively stained particle images resulted in the three-dimensional representation of γ-secretase at a resolution of 48 A. The structure occupies a volume of 560 x 320 x 240 A and resembles a flat heart comprised of two oppositely faced, dimpled domains. A low density space containing multiple pores resides between the domains. Some of the dimples in the putative transmembrane region may house the catalytic site. The large dimensions are consistent with the observation that γ-secretase activity resides within a high molecular weight complex

  13. Three-dimensional MRI with independent slab excitation and encoding.

    Science.gov (United States)

    Eissa, Amir; Wilman, Alan H

    2012-02-01

    Three-dimensional MRI is typically performed with the same orientation for radiofrequency slab excitation and slab select phase encoding. We introduce independent slab excitation and encoding to create a new degree of freedom in three-dimensional MRI, which is the angular relationship between the prescribed excitation volume and the voxel encoding grid. By separating the directions of slab excitation and slab phase encoding, the independent slab excitation and encoding method allows choice of optimal voxel orientation, while maintaining volume excitation based on anatomic landmarks. The method requires simple pulse sequence modifications and uses standard image reconstruction followed by removal of aliasing and image reformatting. The independent slab excitation and encoding method enables arbitrary oblique angle imaging using fixed voxel encoding gradients to maintain similar eddy current, concomitant field, or magnetic dipole effects independent of the oblique angle of excitation. We apply independent slab excitation and encoding to phase and susceptibility-weighted imaging using fixed voxel encoding aligned with the main magnetic field to demonstrate its value in both standardizing and improving image contrast, when using arbitrary oblique imaging volumes. Copyright © 2011 Wiley Periodicals, Inc.

  14. Three-dimensional nanoscale imaging by plasmonic Brownian microscopy

    Science.gov (United States)

    Labno, Anna; Gladden, Christopher; Kim, Jeongmin; Lu, Dylan; Yin, Xiaobo; Wang, Yuan; Liu, Zhaowei; Zhang, Xiang

    2017-12-01

    Three-dimensional (3D) imaging at the nanoscale is a key to understanding of nanomaterials and complex systems. While scanning probe microscopy (SPM) has been the workhorse of nanoscale metrology, its slow scanning speed by a single probe tip can limit the application of SPM to wide-field imaging of 3D complex nanostructures. Both electron microscopy and optical tomography allow 3D imaging, but are limited to the use in vacuum environment due to electron scattering and to optical resolution in micron scales, respectively. Here we demonstrate plasmonic Brownian microscopy (PBM) as a way to improve the imaging speed of SPM. Unlike photonic force microscopy where a single trapped particle is used for a serial scanning, PBM utilizes a massive number of plasmonic nanoparticles (NPs) under Brownian diffusion in solution to scan in parallel around the unlabeled sample object. The motion of NPs under an evanescent field is three-dimensionally localized to reconstruct the super-resolution topology of 3D dielectric objects. Our method allows high throughput imaging of complex 3D structures over a large field of view, even with internal structures such as cavities that cannot be accessed by conventional mechanical tips in SPM.

  15. Three dimensional dynamics of a flexible Motorised Momentum Exchange Tether

    Science.gov (United States)

    Ismail, N. A.; Cartmell, M. P.

    2016-03-01

    This paper presents a new flexural model for the three dimensional dynamics of the Motorised Momentum Exchange Tether (MMET) concept. This study has uncovered the relationships between planar and nonplanar motions, and the effect of the coupling between these two parameters on pragmatic circular and elliptical orbits. The tether sub-spans are modelled as stiffened strings governed by partial differential equations of motion, with specific boundary conditions. The tether sub-spans are flexible and elastic, thereby allowing three dimensional displacements. The boundary conditions lead to a specific frequency equation and the eigenvalues from this provide the natural frequencies of the orbiting flexible motorised tether when static, accelerating in monotonic spin, and at terminal angular velocity. A rotation transformation matrix has been utilised to get the position vectors of the system's components in an assumed inertial frame. Spatio-temporal coordinates are transformed to modal coordinates before applying Lagrange's equations, and pre-selected linear modes are included to generate the equations of motion. The equations of motion contain inertial nonlinearities which are essentially of cubic order, and these show the potential for intricate intermodal coupling effects. A simulation of planar and non-planar motions has been undertaken and the differences in the modal responses, for both motions, and between the rigid body and flexible models are highlighted and discussed.

  16. Three-dimensional modeler for animated images display system

    International Nuclear Information System (INIS)

    Boubekeur, Rania

    1987-01-01

    The mv3d software allows the modeling and display of three dimensional objects in interpretative mode with animation possibility in real time. This system is intended for a graphical extension of a FORTH interpreter (implemented by CEA/IRDI/D.LETI/DEIN) in order to control a specific hardware (3.D card designed and implemented by DEIN) allowing the generation of three dimensional objects. The object description is carried out with a specific graphical language integrated in the FORTH interpreter. Objects are modeled using elementary solids called basic forms (cube, cone, cylinder...) assembled with classical geometric transformations (rotation, translation and scaling). These basic forms are approximated by plane polygonal facets further divided in triangles. Coordinates of the summits of triangles constitute the geometrical data. These are sent to the 3.D. card for processing and display. Performed processing are: geometrical transformations on display, hidden surface elimination, shading and clipping. The mv3d software is not an entire modeler but a simple, modular and extensible tool, to which other specific functions may be easily added such as: robots motion, collisions... (author) [fr

  17. Three-Dimensional Reconstruction of the Mouse Nephron

    DEFF Research Database (Denmark)

    Zhai, Xiao-Yue; Thomsen, Jesper Skovhus; Birn, Henrik

    2006-01-01

    Renal function is crucially dependent on renal microstructure which provides the basis for the regulatory mechanisms that control the transport of water and solutes between filtrate and plasma and the urinary concentration. This study provides new, detailed information on mouse renal architecture...... and collecting ducts was performed on aligned digital images, obtained from 2.5-µm-thick serial sections of mouse kidneys. Important new findings were highlighted: (1) A tortuous course of the descending thin limbs of long-looped nephrons and a winding course of the thick ascending limbs of short-looped nephrons......-looped nephron bends were identified to relate to the length and the position of the nephron and its corresponding glomerulus. The ultrastructure of the tubule segments was identified and suggests important implications for renal transport mechanisms that should be considered when evaluating the segmental...

  18. Thrombus overlying the main stem crista: a three dimensional reconstruction.

    NARCIS (Netherlands)

    G.J.J. van Langenhove (Glenn); P. Vermeersch (Paul); P.W.J.C. Serruys (Patrick)

    2001-01-01

    textabstractA 67 year old patient was referred to our hospital for diagnostic catheterisation. For six days she had been suffering from unstable angina, which was stabilised medically. She had no coronary risk factors. The diagnostic angiogram showed a large thrombus reaching from the first diagonal

  19. Three-dimensional reconstruction for genomic analysis of prostate cancer

    Science.gov (United States)

    Wetzel, Arthur W.; Gilbertson, John; Zheng, Lei; Gilespie, John; Swalwell, Jennifer; Yagi, Yukako; Kim, Sujin; Emmert-Buck, Michael; Becich, Michael J.

    2000-05-01

    Prostate cancer is the second most common cause of cancer deaths and is the most frequently detected form of cancer of males in the US. Death rate scan be greatly reduced by early treatment. Consequently, it is important to understand the cause and progression of this disease in order to improve detection and treatment methods. As part of the Cancer Genome Anatomy Project work is underway to produce a 'molecular finger print' of prostate cancer.

  20. Design of three-dimensional visualization based on the posterior lumbar pedicle screw fixation

    Directory of Open Access Journals (Sweden)

    Kai XU

    2011-09-01

    Full Text Available Objective To establish a three-dimensional visualization model of posterior lumbar pedicle screw fixation.Methods A patient with lumbar intervertebral disc hernia and another patient with compression fracture of lumbar vertebra were involved in the present study.Both patients underwent multi-slice spiral CT scan before and after lumbar pedicle screw fixation.The degree of preoperative vertebral compression,vertebral morphology before and after surgery,postoperative pedicle screw position,and decompression effects were observed.The original data of the multi-slice spiral CT were inputted into the computer.The three-dimensional reconstructed images of the lumbar and implanted screws were obtained using the software Amira 4.1 to show the three-dimensional shape of the lumbar vertebrae before and after surgery and the location of the implanted screws.Results The morphology and structure of the lumbar vertebrae before and after surgery and of the implanted screws were reconstructed using the digital navigation platform.The reconstructed 3D images could be displayed in multicolor,transparent,or arbitrary combinations.In the 3D surface reconstruction images,the location and structure of the implanted screws could be clearly observed,and the decompression of the spinal cord or nerve roots and the severity of the fracture and the compression of lumbar vertebrae could be fully evaluated.The reconstructed images before operation revealed the position of the vertebral pedicles and provided reference for intraoperative localization.Conclusions The three-dimensional computerized reconstructions of lumbar pedicle screw fixation may be valuable in basic research,clinical experiment,and surgical planning.The software Amira is one of the bases of three-dimensional reconstruction.