WorldWideScience

Sample records for technologies encyclopedia fate

  1. Encyclopedia of color science and technology

    CERN Document Server

    2016-01-01

    The Encyclopedia of Color Science and Technology provides an authoritative single source for understanding and applying the concepts of color to all fields of science and technology, including artistic and historical aspects of color. Many topics are discussed in this timely reference, including an introduction to the science of color, and entries on the physics, chemistry and perception of color. Color is described as it relates to optical phenomena of color and continues on through colorants and materials used to modulate color and also to human vision of color. The measurement of color is provided as is colorimetry, color spaces, color difference metrics, color appearance models, color order systems and cognitive color. Other topics discussed include industrial color, color imaging, capturing color, displaying color and printing color. Descriptions of color encodings, color management, processing color and applications relating to color synthesis for computer graphics are included in this work. The Encyclo...

  2. Concise encyclopedia of semiconducting materials and related technologies

    CERN Document Server

    Mahajan, S M

    1992-01-01

    The development of electronic materials and particularly advances in semiconductor technology have played a central role in the electronics revolution by allowing the production of increasingly cheap and powerful computing equipment and advanced telecommunications devices. This Concise Encyclopedia, which incorporates relevant articles from the acclaimed Encyclopedia of Materials Science and Engineering as well as newly commissioned articles, emphasizes the materials aspects of semiconductors and the technologies important in solid-state electronics. Growth of bulk crystals and epitaxial layer

  3. Concise encyclopedia of bioresource technology: a review

    Science.gov (United States)

    The Journal of Environmental Quality requested a review of the book “The Concise Encyclopedia of Biotechnology” from the perspective of a scientist. Biotechnology is an emerging field and has rapidly become a buzzword in popular culture and politics today, yet it is not possible to be an expert in ...

  4. Encyclopedia "Food technology" as a starting stage of the design of future technologies

    OpenAIRE

    V. A. Panfilov

    2013-01-01

    For the first time in Russia created the encyclopedia "Food Technologies' industry focus. Basic information on the organization of machine-made staple food of the person in the beginning of XXI systematized in this encyclopedia. The purpose of article - step up the efforts of specialists in technology development and technology of food production of new generations.

  5. Batteries for sustainability selected entries from the encyclopedia of sustainability science and technology

    CERN Document Server

    Brodd, Ralph J

    2012-01-01

    This collection of selected peer-reviewed papers from Springer's Encyclopedia of Sustainability Science and Technology covers a wide range of battery types, materials and applications, and includes a thorough assessment of their relative sustainability.

  6. Fuel cells selected entries from the encyclopedia of sustainability science and technology

    CERN Document Server

    Kreuer, Klaus-Dieter

    2012-01-01

    The expected end of the "oil age" will lead to increasing focus and reliance on alternative energy conversion devices, among which fuel cells have the potential to play an important role.  Not only can phosphoric acid and solid oxide fuel cells already efficiently convert today's fossil fuels, including methane, into electricity, but other types of fuel cells, such as polymer electrolyte membrane fuel cells, have the potential to become the cornerstones of a possible future hydrogen economy. Featuring 21 peer-reviewed entries from the Encyclopedia of Sustainability Science and Technology, Fuel

  7. Ullmann's Encyclopedia of Industrial Chemistry.

    Science.gov (United States)

    Chadwick, Sharon S.

    1988-01-01

    This review compares "Ullmann's Encyclopedia of Industrial Chemistry" with the "Kirk-Othmer Encyclopedia of Chemical Technology," two prominent encyclopedias of chemical technology and industry. Cost, quantity of information, organization, illustrations, authorship, abbreviations, online availability, and content of articles are discussed. (MES)

  8. Ullmann's Encyclopedia of Industrial Chemistry.

    Science.gov (United States)

    Chadwick, Sharon S.

    1988-01-01

    This review compares "Ullmann's Encyclopedia of Industrial Chemistry" with the "Kirk-Othmer Encyclopedia of Chemical Technology," two prominent encyclopedias of chemical technology and industry. Cost, quantity of information, organization, illustrations, authorship, abbreviations, online availability, and content of articles are discussed. (MES)

  9. Geoengineering Responses to Climate Change Selected Entries from the Encyclopedia of Sustainability Science and Technology

    CERN Document Server

    Vaughan, Naomi

    2013-01-01

    Failure by the international community to make substantive progress in reducing CO2 emissions, coupled with recent evidence of accelerating climate change, has brought increasing urgency to the search for additional remediation approaches.  This book presents a selection of state-of-the-art geoengineering methods for deliberately reducing the effects of anthropogenic climate change, either by actively removing greenhouse gases from the atmosphere or by decreasing the amount of sunlight absorbed at the Earth’s surface.  These methods contrast with more conventional mitigation approaches which focus on reducing emissions of greenhouse gases, especially carbon dioxide. Geoengineering technologies could become a key tool to be used in conjunction with emissions reduction to limit the magnitude of climate change.  Featuring authoritative, peer-reviewed entries from the Encyclopedia of Sustainability Science and Technology, this book presents a wide range of climate change remediation technologies. Examines th...

  10. Earth System Monitoring Selected Entries from the Encyclopedia of Sustainability Science and Technology

    CERN Document Server

    2013-01-01

    Modern Earth System Monitoring represents a fundamental change in the way scientists study the Earth System.  In Oceanography, for the past two centuries, ships have provided the platforms for observing.  Expeditions on the continents and Earth’s poles are land-based analogues. Fundamental understanding of current systems, climate, natural hazards, and ecosystems has been greatly advanced. While these approaches have been remarkably successful, the need to establish measurements over time can only be made using Earth observations and observatories with exacting standards and continuous data.  The 19 peer-reviewed contributions in this volume provide early insights into this emerging view of Earth in both space and time in which change is a critical component of our growing understanding. Presents 19 authoritative, peer-reviewed entries from the Encyclopedia of Sustainability Science and Technology Covers a wide range of data collection platforms, including satellite remote sensing, aerial surveys, and l...

  11. Climate Change Modeling Methodology Selected Entries from the Encyclopedia of Sustainability Science and Technology

    CERN Document Server

    2012-01-01

    The Earth's average temperature has risen by 1.4°F over the past century, and computer models project that it will rise much more over the next hundred years, with significant impacts on weather, climate, and human society. Many climate scientists attribute these increases to the buildup of greenhouse gases produced by the burning of fossil fuels and to the anthropogenic production of short-lived climate pollutants. Climate Change Modeling Methodologies: Selected Entries from the Encyclopedia of Sustainability Science and Technology provides readers with an introduction to the tools and analysis techniques used by climate change scientists to interpret the role of these forcing agents on climate.  Readers will also gain a deeper understanding of the strengths and weaknesses of these models and how to test and assess them.  The contributions include a glossary of key terms and a concise definition of the subject for each topic, as well as recommendations for sources of more detailed information. Features au...

  12. [Mathematics, natural sciences and technology--parts of the encyclopedia Die Kultur der Gegenwart (The culture of today)].

    Science.gov (United States)

    Tobies, Renate

    2008-03-01

    The paper explores the trend of the early 20th century to consolidate mathematics, natural sciences, medicine and technology under the umbrella of one integrative culture--a tendency which contrasts with the increasing mainstream trend of separating the humanities from the natural sciences. The unifying umbrella was framed by the great encyclopedia Die Kultur der Gegenwart which was published by B. G. Teubner from 1905 to 1925 and was planned to run up to 62 volumes. We analyze the quantitative rate of the parts devoted to the humanities, the natural sciences and technology, respectively, the degree to which these parts were completed in this encyclopedia. In particular, we investigate the role of mathematicians and their reasons to find a classification for the mathematical, natural scientific and engineering parts of culture as well as their reasons, to win Nobel prize winners and other famous scientists to become co-editors and authors. We examine the published volumes in the fields of mathematics, chemistry, physics, astronomy and technology in order to show what type of publication--professional or popular--was intended. Furthermore, we illuminate how the educational reform of mathematics, natural sciences and technology of this period--which included a reform of girls' and women's education--was reflected in the encyclopedia Die Kultur der Gegenwart.

  13. Encyclopedia of tribology

    CERN Document Server

    Chung, Yip-Wah

    2013-01-01

    TRIBOLOGY – the study of friction, wear and lubrication – impacts almost every aspect of our daily lives. The Springer Encyclopedia of Tribology is an authoritative and comprehensive reference covering all major aspects of the science and engineering of tribology that are relevant to researchers across all engineering industries and related scientific disciplines. This is the first major reference that brings together the science, engineering and technological aspects of tribology of this breadth and scope in a single work. Developed and written by leading experts in the field, the Springer Encyclopedia of Tribology covers the fundamentals as well as advanced applications across material types, different length and time scales, and encompassing various engineering applications and technologies. Exciting new areas such as nanotribology, tribochemistry and biotribology have also been included. As a six-volume set, the Springer Encyclopedia of Tribology comprises 1630 entries written by authoritative experts...

  14. Encyclopedia of cloud computing

    CERN Document Server

    Bojanova, Irena

    2016-01-01

    The Encyclopedia of Cloud Computing provides IT professionals, educators, researchers and students with a compendium of cloud computing knowledge. Authored by a spectrum of subject matter experts in industry and academia, this unique publication, in a single volume, covers a wide range of cloud computing topics, including technological trends and developments, research opportunities, best practices, standards, and cloud adoption. Providing multiple perspectives, it also addresses questions that stakeholders might have in the context of development, operation, management, and use of clouds. Furthermore, it examines cloud computing's impact now and in the future. The encyclopedia presents 56 chapters logically organized into 10 sections. Each chapter covers a major topic/area with cross-references to other chapters and contains tables, illustrations, side-bars as appropriate. Furthermore, each chapter presents its summary at the beginning and backend material, references and additional resources for further i...

  15. Brazilian Sign Language Lexicography and Technology: Dictionary, Digital Encyclopedia, Chereme-based Sign Retrieval, and Quadriplegic Deaf Communication Systems.

    Science.gov (United States)

    Capovilla, Fernando C.; Duduchi, Marcelo; Raphael, Walkiria D.; Luz, Renato D.; Rozados, Daniela; Capovilla, Alessandra G. S.; Macedo, Elizeu C.

    2003-01-01

    Discusses the Brazilian Sign language digital encyclopedia, which contains a databank of 5,600 signs glossed in Portuguese and English, along with descriptions and illustrations of their signed form. (Author/VWL)

  16. Fossil energy selected entries from the encyclopedia of sustainability science and technology

    CERN Document Server

    Malhotra, Ripudaman

    2012-01-01

    Fossil Energy provides an authoritative reference on all aspects of this key resource.  It offers comprehensive coverage of fundamentals, current areas of research, and goals for the future to support real progress in sustainability science and technology.

  17. Heart and Stroke Encyclopedia

    Science.gov (United States)

    ... Venous Thromboembolism Aortic Aneurysm More The Heart and Stroke Encyclopedia Click a letter below to get a ... dozens of cardiovascular terms from our Heart and Stroke Encyclopedia and get links to in-depth information. ...

  18. Encyclopedia Reviews 1978

    Science.gov (United States)

    Minemier, Betty

    1978-01-01

    Reviews thirteen 1978 edition encyclopedias: Book of Art, Britannica Jr., Britannica 3, Childcraft, Collier's, Compton's. Encyclopedia Americana, Funk & Wagnalls, Merit Students, New Caton, Random House, New Standard, and World Book. (SB)

  19. Electrical transmission systems and smart grids selected entries from the encyclopedia of sustainability science and technology

    CERN Document Server

    Begovic, Miroslav M

    2012-01-01

    Electric transmission networks are among the largest human-made engineering systems: For example, the transmission network in the United States covers over 300,000 km of lines and is served by 500 companies (electric utilities). In sharp contrast to the very incremental developments of the last century, transmission and control technologies experienced a major breakthrough at the beginning of the 21st century. The rapid growth of new energy generation technologies (renewables), significant advances in information processing applied to system monitoring, planning, operation, control, and protec

  20. Encyclopedia of new media an essential reference to communication and technology

    CERN Document Server

    Jones, Steve

    2002-01-01

    ""From Space Invaders to digital television, the 275 entries explore the developments of computer and Web applications and related media. Most take a historical perspective to innovation, but many explain such concepts as access, firewalls, information design, linking, markup languages and usability. . . . This informed and up-to-date guide to emerging technologies is highly recommended to academic and public libraries.""

  1. Concise encyclopedia of software engineering

    CERN Document Server

    Morris, Derrick

    1993-01-01

    This Concise Encyclopedia of Software Engineering is intended to provide compact coverage of the knowledge relevant to the practicing software engineer. The content has been chosen to provide an introduction to the theory and techniques relevant to the software of a broad class of computer applications. It is supported by examples of particular applications and their enabling technologies. This Encyclopedia will be of value to new practitioners who need a concise overview and established practitioners who need to read about the ""penumbra"" surrounding their own specialities. It will also be u

  2. CIRP encyclopedia of production engineering

    CERN Document Server

    Reinhart, Gunther

    2014-01-01

    The CIRP Encyclopedia covers the state-of-art of advanced technologies, methods and models for production, production engineering and logistics. While the technological and operational aspects are in the focus, economical aspects are adressed too. The definitions and short explanations for a wide variety of terms were reviewed by the CIRP-Community, representing the highest standards in research. Thus, the content is not only evaluated internationally on a high scientific level but also reflects very recent developments.

  3. Medical Encyclopedia: MedlinePlus

    Science.gov (United States)

    ... of this page: https://medlineplus.gov/encyclopedia.html Medical Encyclopedia To use the sharing features on this ... please enable JavaScript. The A.D.A.M. Medical Encyclopedia includes over 4,000 articles about diseases, ...

  4. Encyclopedia of adolescence

    NARCIS (Netherlands)

    Brown, B.B.; Prinstein, M.J.

    2011-01-01

    The period of adolescence involves growth, adaptation, and dramatic reorganization in almost every aspect of social and psychological development. The Encyclopedia of Adolescence offers an exhaustive and comprehensive review of current theory and research findings pertaining to this critical decade

  5. Encyclopedia of analytical surfaces

    CERN Document Server

    Krivoshapko, S N

    2015-01-01

    This encyclopedia presents an all-embracing collection of analytical surface classes. It provides concise definitions  and description for more than 500 surfaces and categorizes them in 38 classes of analytical surfaces. All classes are cross references to the original literature in an excellent bibliography. The encyclopedia is of particular interest to structural and civil engineers and serves as valuable reference for mathematicians.

  6. Encyclopedia of earthquake engineering

    CERN Document Server

    Kougioumtzoglou, Ioannis; Patelli, Edoardo; Au, Siu-Kui

    2015-01-01

    The Encyclopedia of Earthquake Engineering is designed to be the authoritative and comprehensive reference covering all major aspects of the science of earthquake engineering, specifically focusing on the interaction between earthquakes and infrastructure. The encyclopedia comprises approximately 265 contributions. Since earthquake engineering deals with the interaction between earthquake disturbances and the built infrastructure, the emphasis is on basic design processes important to both non-specialists and engineers so that readers become suitably well-informed without needing to deal with the details of specialist understanding. The content of this encyclopedia provides technically inclined and informed readers about the ways in which earthquakes can affect our infrastructure and how engineers would go about designing against, mitigating and remediating these effects. The coverage ranges from buildings, foundations, underground construction, lifelines and bridges, roads, embankments and slopes. The encycl...

  7. Encyclopedia as Textbook

    Science.gov (United States)

    Palló, Gábor

    2006-11-01

    Textbooks and encyclopedias represent different genres of scientific literature. Textbooks help the students to prepare for their examinations in various subjects taught at schools, such as logic, metaphysic, chemistry. In the 17th Century some Calvinist professors, mostly in Germany, thought that a universal wholeness should be taught for the students. Encyclopedias adequately expressed this vision. Some of these professors, including Johannes Alsted, were invited to Hungary, Transylvania, to introduce the encyclopedic spirit to the local schools. This act fostered the first textbook in Hungarian language written by János Apáczai Csere. This book was an encyclopedia born mostly in the Netherlands where the author studied. The Cartesian philosophy combined with a Ramist system served as the basis of the book. Its history shows how the local conditions influence the content of knowledge incorporated into a textbook.

  8. Encyclopedia of Information Ethics and Security

    OpenAIRE

    Akbulut, Reviewed By Yavuz

    2008-01-01

    233Rapid developments in information andcommunication technologies have created newsecurity threats along with ethical dilemmas. Thesedevelopments have been so fast that appropriatesecurity precautions and ethical codes fail to keeppace with the technological developments. In thisrespect, education of both professionals andordinary citizens regarding information technologyethics carries utmost importance. Encyclopedia ofInformation Ethics and Security serves as anauthentic and comprehensive r...

  9. Encyclopedia of Information Ethics and Security

    OpenAIRE

    Akbulut, Reviewed By Yavuz

    2008-01-01

    233Rapid developments in information andcommunication technologies have created newsecurity threats along with ethical dilemmas. Thesedevelopments have been so fast that appropriatesecurity precautions and ethical codes fail to keeppace with the technological developments. In thisrespect, education of both professionals andordinary citizens regarding information technologyethics carries utmost importance. Encyclopedia ofInformation Ethics and Security serves as anauthentic and comprehensive r...

  10. Encyclopedia of Rose Science

    NARCIS (Netherlands)

    Roberts, A.; Debener, T.; Gudin, S.; Byrne, D.B.; Cairns, T.; Vries, de D.P.; Dubois, L.A.M.; Forkmann, G.; Fruchter, M.; Helsper, J.P.F.G.; Horst, R.K.; Jay, M.; Kwakkenbosch, T.A.M.; Pemberton, B.; Put, H.M.C.; Rajapakse, S.; Reid, M.; Schum, A.; Shorthouse, J.D.; Ueda, Y.; Vainstein, A.; Pol, van de P.A.; Zieslin, N.

    2003-01-01

    The Encyclopedia of Rose Science brings together a wealth of information on the rose, long treasured for its captivating perfumes and splendid colors. Now, more than ever, science plays a central place in the production of this flower at the center of one of the world's biggest floricultural industr

  11. Encyclopedia of Birth Control.

    Science.gov (United States)

    Rengel, Marian

    This encyclopedia brings together in more than 200 entries, arranged in A-to-Z format, a portrait of the complex modern issue that birth control has become with advances in medicine and biochemistry during the 20th century. It is aimed at both the student and the consumer of birth control. Entries cover the following topics: birth control…

  12. Encyclopedia as Textbook

    Science.gov (United States)

    Pallo, Gabor

    2006-01-01

    Textbooks and encyclopedias represent different genres of scientific literature. Textbooks help the students to prepare for their examinations in various subjects taught at schools, such as logic, metaphysic, chemistry. In the 17th Century some Calvinist professors, mostly in Germany, thought that a universal wholeness should be taught for the…

  13. The Transcription Factor Encyclopedia

    DEFF Research Database (Denmark)

    Yusuf, Dimas; Butland, Stefanie L; Swanson, Magdalena I

    2012-01-01

    ABSTRACT: Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130...

  14. Encyclopedia of Birth Control.

    Science.gov (United States)

    Rengel, Marian

    This encyclopedia brings together in more than 200 entries, arranged in A-to-Z format, a portrait of the complex modern issue that birth control has become with advances in medicine and biochemistry during the 20th century. It is aimed at both the student and the consumer of birth control. Entries cover the following topics: birth control…

  15. Contribution to encyclopedia of thermal stresses

    Science.gov (United States)

    Taler, Jan; Ocłoń, Pawel

    2015-06-01

    This paper lists the contribution in the international interdisciplinary reference - Encyclopedia of Thermal Stresses (ETS). The ETS, edited by the world famous expert in field of Thermal Stresses - Professor Richard Hetnarski from Rochester Institute of Technology, was published by Springer in 2014. This unique Encyclopedia, subdivided into 11 volumes is the most extensive and comprehensive work related to the Thermal Stresses topic. The entries were carefully prepared by specialists in the field of thermal stresses, elasticity, heat conduction, optimization among others. The Polish authors' contribution within this work is significant; over 70 entries were prepared by them.

  16. The Electronic Encyclopedia of Earthquakes

    Science.gov (United States)

    Benthien, M.; Marquis, J.; Jordan, T.

    2003-12-01

    The Electronic Encyclopedia of Earthquakes is a collaborative project of the Southern California Earthquake Center (SCEC), the Consortia of Universities for Research in Earthquake Engineering (CUREE) and the Incorporated Research Institutions for Seismology (IRIS). This digital library organizes earthquake information online as a partner with the NSF-funded National Science, Technology, Engineering and Mathematics (STEM) Digital Library (NSDL) and the Digital Library for Earth System Education (DLESE). When complete, information and resources for over 500 Earth science and engineering topics will be included, with connections to curricular materials useful for teaching Earth Science, engineering, physics and mathematics. Although conceived primarily as an educational resource, the Encyclopedia is also a valuable portal to anyone seeking up-to-date earthquake information and authoritative technical sources. "E3" is a unique collaboration among earthquake scientists and engineers to articulate and document a common knowledge base with a shared terminology and conceptual framework. It is a platform for cross-training scientists and engineers in these complementary fields and will provide a basis for sustained communication and resource-building between major education and outreach activities. For example, the E3 collaborating organizations have leadership roles in the two largest earthquake engineering and earth science projects ever sponsored by NSF: the George E. Brown Network for Earthquake Engineering Simulation (CUREE) and the EarthScope Project (IRIS and SCEC). The E3 vocabulary and definitions are also being connected to a formal ontology under development by the SCEC/ITR project for knowledge management within the SCEC Collaboratory. The E3 development system is now fully operational, 165 entries are in the pipeline, and the development teams are capable of producing 20 new, fully reviewed encyclopedia entries each month. Over the next two years teams will

  17. Encyclopedia of thermal stresses

    CERN Document Server

    2014-01-01

    The Encyclopedia of Thermal Stresses is an important interdisciplinary reference work.  In addition to topics on thermal stresses, it contains entries on related topics, such as the theory of elasticity, heat conduction, thermodynamics, appropriate topics on applied mathematics, and topics on numerical methods. The Encyclopedia is aimed at undergraduate and graduate students, researchers and engineers. It brings together well established knowledge and recently received results. All entries were prepared  by leading experts from all over the world, and are presented in an easily accessible format. The work is lavishly illustrated, examples and applications are given where appropriate, ideas for further development abound, and the work will challenge many students and researchers to pursue new results of their own. This work can also serve as a one-stop resource for all who need succinct, concise, reliable and up to date information in short encyclopedic entries, while the extensive references will be of inte...

  18. Encyclopedia of systems and control

    CERN Document Server

    Samad, Tariq

    2015-01-01

    The Encyclopedia of Systems and Control collects a broad range of short expository articles that describe the current state of the art in the central topics of control and systems engineering as well as in many of the related fields in which control is an enabling technology. The editors have assembled the most comprehensive reference possible, and this has been greatly facilitated by the publisher’s commitment continuously to publish updates to the articles as they become available in the future. Although control engineering is now a mature discipline, it remains an area in which there is a great deal of research activity, and as new developments in both theory and applications become available, they will be included in the online version of the encyclopedia. A carefully chosen team of leading authorities in the field has written the well over 200 articles that comprise the work. The topics range from basic principles of feedback in servomechanisms to advanced topics such as the control of Boolean networks...

  19. Encyclopedia of optimization

    CERN Document Server

    Pardalos, Panos

    2001-01-01

    Optimization problems are widespread in the mathematical modeling of real world systems and their applications arise in all branches of science, applied science and engineering. The goal of the Encyclopedia of Optimization is to introduce the reader to a complete set of topics in order to show the spectrum of recent research activities and the richness of ideas in the development of theories, algorithms and the applications of optimization. It is directed to a diverse audience of students, scientists, engineers, decision makers and problem solvers in academia, business, industry, and government.

  20. The transcription factor encyclopedia.

    Science.gov (United States)

    Yusuf, Dimas; Butland, Stefanie L; Swanson, Magdalena I; Bolotin, Eugene; Ticoll, Amy; Cheung, Warren A; Zhang, Xiao Yu Cindy; Dickman, Christopher T D; Fulton, Debra L; Lim, Jonathan S; Schnabl, Jake M; Ramos, Oscar H P; Vasseur-Cognet, Mireille; de Leeuw, Charles N; Simpson, Elizabeth M; Ryffel, Gerhart U; Lam, Eric W-F; Kist, Ralf; Wilson, Miranda S C; Marco-Ferreres, Raquel; Brosens, Jan J; Beccari, Leonardo L; Bovolenta, Paola; Benayoun, Bérénice A; Monteiro, Lara J; Schwenen, Helma D C; Grontved, Lars; Wederell, Elizabeth; Mandrup, Susanne; Veitia, Reiner A; Chakravarthy, Harini; Hoodless, Pamela A; Mancarelli, M Michela; Torbett, Bruce E; Banham, Alison H; Reddy, Sekhar P; Cullum, Rebecca L; Liedtke, Michaela; Tschan, Mario P; Vaz, Michelle; Rizzino, Angie; Zannini, Mariastella; Frietze, Seth; Farnham, Peggy J; Eijkelenboom, Astrid; Brown, Philip J; Laperrière, David; Leprince, Dominique; de Cristofaro, Tiziana; Prince, Kelly L; Putker, Marrit; del Peso, Luis; Camenisch, Gieri; Wenger, Roland H; Mikula, Michal; Rozendaal, Marieke; Mader, Sylvie; Ostrowski, Jerzy; Rhodes, Simon J; Van Rechem, Capucine; Boulay, Gaylor; Olechnowicz, Sam W Z; Breslin, Mary B; Lan, Michael S; Nanan, Kyster K; Wegner, Michael; Hou, Juan; Mullen, Rachel D; Colvin, Stephanie C; Noy, Peter John; Webb, Carol F; Witek, Matthew E; Ferrell, Scott; Daniel, Juliet M; Park, Jason; Waldman, Scott A; Peet, Daniel J; Taggart, Michael; Jayaraman, Padma-Sheela; Karrich, Julien J; Blom, Bianca; Vesuna, Farhad; O'Geen, Henriette; Sun, Yunfu; Gronostajski, Richard M; Woodcroft, Mark W; Hough, Margaret R; Chen, Edwin; Europe-Finner, G Nicholas; Karolczak-Bayatti, Magdalena; Bailey, Jarrod; Hankinson, Oliver; Raman, Venu; LeBrun, David P; Biswal, Shyam; Harvey, Christopher J; DeBruyne, Jason P; Hogenesch, John B; Hevner, Robert F; Héligon, Christophe; Luo, Xin M; Blank, Marissa Cathleen; Millen, Kathleen Joyce; Sharlin, David S; Forrest, Douglas; Dahlman-Wright, Karin; Zhao, Chunyan; Mishima, Yuriko; Sinha, Satrajit; Chakrabarti, Rumela; Portales-Casamar, Elodie; Sladek, Frances M; Bradley, Philip H; Wasserman, Wyeth W

    2012-01-01

    Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

  1. The Transcription Factor Encyclopedia

    DEFF Research Database (Denmark)

    Yusuf, Dimas; Butland, Stefanie L; Swanson, Magdalena I

    2012-01-01

    mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written......ABSTRACT: Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130...

  2. Genomic Encyclopedia of Fungi

    Energy Technology Data Exchange (ETDEWEB)

    Grigoriev, Igor

    2012-08-10

    Genomes of fungi relevant to energy and environment are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 150 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such parts suggested by comparative genomics and functional analysis in these areas are presented here.

  3. An Einstein encyclopedia

    CERN Document Server

    Calaprice, Alice; Schulmann, Robert

    2015-01-01

    This is the single most complete guide to Albert Einstein’s life and work for students, researchers, and browsers alike. Written by three leading Einstein scholars who draw on their combined wealth of expertise gained during their work on the Collected Papers of Albert Einstein, this authoritative and accessible reference features more than one hundred entries and is divided into three parts covering the personal, scientific, and public spheres of Einstein’s life. An Einstein Encyclopedia contains entries on Einstein’s birth and death, family and romantic relationships, honors and awards, educational institutions where he studied and worked, citizenships and immigration to America, hobbies and travels, plus the people he befriended and the history of his archives and the Einstein Papers Project. Entries on Einstein’s scientific theories provide useful background and context, along with details about his assistants, collaborators, and rivals, as well as physics concepts related to his work. Coverage o...

  4. Encyclopedia of astrobiology

    CERN Document Server

    Irvine, William; Amils, Ricardo; Cleaves, Henderson; Pinti, Daniele; Quintanilla, José; Rouan, Daniel; Spohn, Tilman; Tirard, Stéphane; Viso, Michel

    2015-01-01

    The interdisciplinary field of Astrobiology constitutes a joint arena where provocative discoveries are coalescing concerning, e.g. the prevalence of exoplanets, the diversity and hardiness of life, and its increasingly likely chances for its emergence. Biologists, astrophysicists, biochemists, geoscientists and space scientists share this exciting mission of revealing the origin and commonality of life in the Universe. The members of the different disciplines are used to their own terminology and technical language. In the interdisciplinary environment many terms either have redundant meanings or are completely unfamiliar to members of other disciplines. The Encyclopedia of Astrobiology serves as the key to a common understanding. Each new or experienced researcher and graduate student in adjacent fields of astrobiology will appreciate this reference work in the quest to understand the big picture. The carefully selected group of active researchers contributing to this work and the expert field editors inten...

  5. Encyclopedia of biophysics

    CERN Document Server

    2013-01-01

    The Encyclopedia of Biophysics is envisioned both as an easily accessible source of information and as an introductory guide to the scientific literature. It includes entries describing both Techniques and Systems.  In the Techniques entries, each of the wide range of methods which fall under the heading of Biophysics are explained in detail, together with the value and the limitations of the information each provides. Techniques covered range from diffraction (X-ray, electron and neutron) through a wide range of spectroscopic methods (X-ray, optical, EPR, NMR) to imaging (from electron microscopy to live cell imaging and MRI), as well as computational and simulation approaches. In the Systems entries, biophysical approaches to specific biological systems or problems – from protein and nucleic acid structure to membranes, ion channels and receptors – are described. These sections, which place emphasis on the integration of the different techniques, therefore provide an inroad into Biophysics from a biolo...

  6. Encyclopedia of astrobiology

    CERN Document Server

    Quintanilla, José Cernicharo; Cleaves, Henderson James (Jim); Irvine, William M; Pinti, Daniele L; Viso, Michel; Gargaud, Muriel

    2011-01-01

    The interdisciplinary field of Astrobiology constitutes a joint arena where provocative discoveries are coalescing concerning, e.g. the prevalence of exoplanets, the diversity and hardiness of life, and its increasingly likely chances for its emergence. Biologists, astrophysicists, biochemists, geoscientists and space scientists share this exciting mission of revealing the origin and commonality of life in the Universe. The members of the different disciplines are used to their own terminology and technical language. In the interdisciplinary environment many terms either have redundant meanings or are completely unfamiliar to members of other disciplines. The Encyclopedia of Astrobiology serves as the key to a common understanding. Each new or experienced researcher and graduate student in adjacent fields of astrobiology will appreciate this reference work in the quest to understand the big picture. The carefully selected group of active researchers contributing to this work and the expert field editors inten...

  7. Biographical encyclopedia of astronomers

    CERN Document Server

    Trimble, Virginia; Williams, Thomas; Bracher, Katherine; Jarrell, Richard; Marché, Jordan; Palmeri, JoAnn; Green, Daniel

    2014-01-01

    The Biographical Encyclopedia of Astronomers is a unique and valuable resource for historians and astronomers alike. It includes approx. 1850 biographical sketches on astronomers from antiquity to modern times. It is the collective work of 430 authors edited by an editorial board of 8 historians and astronomers. This reference provides biographical information on astronomers and cosmologists by utilizing contemporary historical scholarship. The fully corrected and updated second edition adds approximately 300 biographical sketches. Based on ongoing research and feedback from the community, the new entries will fill gaps and provide expansions. In addition, greater emphasis on Russo phone astronomers and radio astronomers is given. Individual entries vary from 100 to 1500 words, including the likes of the super luminaries such as Newton and Einstein, as well as lesser-known astronomers like Galileo's acolyte, Mario Guiducci.

  8. Encyclopedia of Smart Materials, 2 Volume Set

    Science.gov (United States)

    Schwartz, Mel

    2002-03-01

    Smart materials--materials and structures that can impart information about their environment to an observer or monitoring device--are revolutionizing fields as diverse as engineering, optics, and medical technology. Advances in smart materials are impacting disciplines across the scientific and technological landscape. Now, practictioners and researchers have an authoritative source to go to for answers about this emerging new area. Encyclopedia of Smart Materials provides A-to-Z coverage of the entire field of intelligent materials. Discussions of theory, fabrication, processing, applications, and uses of these unique materials are presented here in a collection of concise entries from the world's foremost experts in the field--including scientists, educators and engineers. This encyclopedia is as broad in scope as the technology itself, addressing daily, commercial applications as well as sophisticated units designed to operate in space, underwater, underground, and within the human body. Extensively cross-referenced and generously supplemented with bibliographies and indexes, this book's treatment also broaches the specialized properties and coatings that are required for the use of materials in extreme conditions. Illustrated with photographs, tables, line drawings, and equations, Encyclopedia of Smart Materials is the premier reference for material scientists, chemists, chemical engineers, process engineers, consultants, patent attorneys and students in these areas. An essential resource on the shelves of laboratories, government facilities, and academic libraries. Editor-in-Chief, Mel Schwartz has over forty years of experience with metals, ceramics, and composites, with special expertise in brazing. The holder of five patents, he has authored thirteen books and more than one hundred technical papers and articles. Reach the information you need rapidly and easily with the ONLINE edition of the Encyclopedia of Smart Materials. The online edition delivers all

  9. RIKEN mouse genome encyclopedia.

    Science.gov (United States)

    Hayashizaki, Yoshihide

    2003-01-01

    We have been working to establish the comprehensive mouse full-length cDNA collection and sequence database to cover as many genes as we can, named Riken mouse genome encyclopedia. Recently we are constructing higher-level annotation (Functional ANnoTation Of Mouse cDNA; FANTOM) not only with homology search based annotation but also with expression data profile, mapping information and protein-protein database. More than 1,000,000 clones prepared from 163 tissues were end-sequenced to classify into 159,789 clusters and 60,770 representative clones were fully sequenced. As a conclusion, the 60,770 sequences contained 33,409 unique. The next generation of life science is clearly based on all of the genome information and resources. Based on our cDNA clones we developed the additional system to explore gene function. We developed cDNA microarray system to print all of these cDNA clones, protein-protein interaction screening system, protein-DNA interaction screening system and so on. The integrated database of all the information is very useful not only for analysis of gene transcriptional network and for the connection of gene to phenotype to facilitate positional candidate approach. In this talk, the prospect of the application of these genome resourced should be discussed. More information is available at the web page: http://genome.gsc.riken.go.jp/.

  10. The market research encyclopedia.

    Science.gov (United States)

    Barabba, V P

    1990-01-01

    Market research can be a complicated and complex process nowadays, especially when it involves sophisticated techniques with names like probabilistic sampling, Box-Jenkins, or conjoint analysis. There is a need for a guide that will help managers determine the dimensions of the task, the resources that must be summoned, the data required, and other key elements. Here, from the head of market research at General Motors, is such a guide in outline form. Vincent P. Barabba walks the reader through the five major stages of the research effort. Each stage is represented in one table, and together the tables combine into a mammoth foldout for easy perusal. The stages are: 1. Assess the market information needs. 2. Measure the marketplace. 3. Store, retrieve, and display the data. 4. Describe and analyze market information. 5. Evaluate the research and assess its usefulness. Comprehensiveness is a hallmark of the "encyclopedia." In the second table, for example, one of the headings under "nonprobabilistic data" is "central location interviewing." Barabba lists the limitations of this kind of research: "Very expensive; responses in this artificial environment may not reflect responses in the market; complicated logistics; development of test product can be time consuming and expensive."

  11. Encyclopedia of Tuvan culture: timeliness, concept, problems

    Directory of Open Access Journals (Sweden)

    Chimiza K. Lamazhaa

    2016-06-01

    Full Text Available Article arises the problem of creating the encyclopedia of Tuvan culture. History of development of encyclopedia projects in world culture is reviews as well as description of the variants of encyclopedias in 20th century. Characteristics of dictionaries about different aspects of Tuvan culture are provided. Possibilities for thesaurus approach to creating the new encyclopedia of Tuvan culture are estimated.

  12. Encyclopedia of Tuvan culture: timeliness, concept, problems

    OpenAIRE

    Chimiza K. Lamazhaa

    2016-01-01

    Article arises the problem of creating the encyclopedia of Tuvan culture. History of development of encyclopedia projects in world culture is reviews as well as description of the variants of encyclopedias in 20th century. Characteristics of dictionaries about different aspects of Tuvan culture are provided. Possibilities for thesaurus approach to creating the new encyclopedia of Tuvan culture are estimated.

  13. Encyclopedia of Distance Learning

    Science.gov (United States)

    Howard, Caroline, Ed.; Boettecher, Judith, Ed.; Justice, Lorraine, Ed.; Schenk, Karen, Ed.; Rogers, Patricia, Ed.; Berg, Gary, Ed.

    2005-01-01

    The innovations in computer and communications technologies combined with on-going needs to deliver educational programs to students regardless of their physical locations, have lead to the innovation of distance education programs and technologies. To keep up with recent developments in both areas of technologies and techniques related to…

  14. CRC concise encyclopedia of mathematics

    CERN Document Server

    Weisstein, Eric W

    2003-01-01

    Upon publication, the first edition of the CRC Concise Encyclopedia of Mathematics received overwhelming accolades for its unparalleled scope, readability, and utility. It soon took its place among the top selling books in the history of Chapman & Hall/CRC, and its popularity continues unabated. Yet also unabated has been the dedication of author Eric Weisstein to collecting, cataloging, and referencing mathematical facts, formulas, and definitions. He has now updated most of the original entries and expanded the Encyclopedia to include 1000 additional pages of illustrated entries. The accessibility of the Encyclopedia along with its broad coverage and economical price make it attractive to the widest possible range of readers and certainly a must for libraries, from the secondary to the professional and research levels. For mathematical definitions, formulas, figures, tabulations, and references, this is simply the most impressive compendium available.

  15. The Fate of Equality in a Technological Civilization

    Science.gov (United States)

    Stivers, Richard

    2008-01-01

    The meaning of equality has been radically altered since the Enlightenment. In the 18th century, equality acquired political and economic meanings specifically in the contexts of democracy and capitalism. Today, the context in which equality is understood and practiced is technology as our most immediate and compelling environment. Moreover, the…

  16. Encyclopedia of the solar system

    CERN Document Server

    Spohn, Tilman; Johnson, Torrence

    2014-01-01

    The Encyclopedia of the Solar System, Third Edition-winner of the 2015 PROSE Award in Cosmology & Astronomy from the Association of American Publishers-provides a framework for understanding the origin and evolution of the solar system, historical discoveries, and details about planetary bodies and how they interact-with an astounding breadth of content and breathtaking visual impact. The encyclopedia includes the latest explorations and observations, hundreds of color digital images and illustrations, and over 1,000 pages. It stands alone as the definitive work in this field, and will serve

  17. Functional Encyclopedia of Bacteria and Archaea

    Energy Technology Data Exchange (ETDEWEB)

    Blow, M. J.; Deutschbauer, A. M.; Hoover, C. A.; Lamson, J.; Lamson, J.; Price, M. N.; Waters, J.; Wetmore, K. M.; Bristow, J.; Arkin, A. P.

    2013-03-20

    Bacteria and Archaea exhibit a huge diversity of metabolic capabilities with fundamental importance in the environment, and potential applications in biotechnology. However, the genetic bases of these capabilities remain unclear due largely to an absence of technologies that link DNA sequence to molecular function. To address this challenge, we are developing a pipeline for high throughput annotation of gene function using mutagenesis, growth assays and DNA sequencing. By applying this pipeline to annotate gene function in 50 diverse microbes we hope to discover thousands of new gene functions and produce a proof of principle `Functional Encyclopedia of Bacteria and Archaea?.

  18. Encyclopedia of microfluidics and nanofluidics

    CERN Document Server

    2015-01-01

    Covering all aspects of transport phenomena on the nano- and micro-scale, the 800 entries include 300 essay entries.  The Encyclopedia gives an up to date look at the fundamentals of the field as well as many experiments and applications in growing areas such as energy devices and bioengineering applications.

  19. Encyclopedia of the Cold War

    NARCIS (Netherlands)

    van Dijk, R.

    2008-01-01

    Between 1945 and 1991, tension between the USA, its allies, and a group of nations led by the USSR, dominated world politics. This period was called the Cold War - a conflict that stopped short to a full-blown war. Benefiting from the recent research of newly open archives, the Encyclopedia of the C

  20. Novartis Compiles Mouse Avatar "Encyclopedia".

    Science.gov (United States)

    Poh, Alissa

    2016-01-01

    Novartis scientists have generated the PDX Encyclopedia, which contains over 1,000 patient-derived tumor xenograft models spanning a range of common solid cancers. They'll use this collection for in vivo drug screens designed to mimic human clinical trials, which they hope improves candidate therapy profiling.

  1. Encyclopedia of the Cold War

    NARCIS (Netherlands)

    van Dijk, R.

    2008-01-01

    Between 1945 and 1991, tension between the USA, its allies, and a group of nations led by the USSR, dominated world politics. This period was called the Cold War - a conflict that stopped short to a full-blown war. Benefiting from the recent research of newly open archives, the Encyclopedia of the

  2. Book review of "Encyclopedia of soil science"

    Science.gov (United States)

    This book review describes "Encyclopedia of soil science" edited by Chesworth et al. (2008), an update of the 1979 version of "The encyclopedia of soil science" edited by Fairbridge and Finkl. It is compared with Hillel et al. (2004) second edition of "Encyclopedia of soils in the environment" and w...

  3. Encyclopedia of the solar system

    CERN Document Server

    Weissman, Paul; Johnson, Torrence

    1998-01-01

    The Encyclopedia of the Solar System provides a series of comprehensive and authoritative articles written by more than 50 eminent planetary and space scientists. Each chapter is self-contained yet linked by cross-references to other related chapters. This beautifully designed book is a must for the library of professional astronomers and amateur star-gazers alike, in fact for anyone who wishes to understand the nature of our solar system.Key Features* Cross-referenced throughout for easy comprehension* Superbly illustrated with over 700 photos, drawings, and diagrams, including 36 color plates* Provides 40 thematically organized chapters by more than 50 eminent contributors* Convenient glossaries of technical terms introduce each chapter* Academic Press maintains a web site for the Encyclopedia at www.academicpress.com/solar; Author-recommended web resources for additional information, images, and research developments related to each chapter of this volume, are available here

  4. The Concise Encyclopedia of Statistics

    CERN Document Server

    Dodge, Yadolah

    2008-01-01

    The Concise Encyclopedia of Statistics presents the essential information about statistical tests, concepts, and analytical methods in language that is accessible to practitioners and students of the vast community using statistics in medicine, engineering, physical science, life science, social science, and business/economics. The reference is alphabetically arranged to provide quick access to the fundamental tools of statistical methodology and biographies of famous statisticians. The more than 500 entries include definitions, history, mathematical details, limitations, examples, references,

  5. [An encyclopedia for the empire].

    Science.gov (United States)

    Stöltzner, Michael

    2008-03-01

    In the preface to the universal encyclopedia Die Kultur der Gegenwart (The Culture of the Present), the editor-in-chief Paul Hinneberg places his project--not openly but nevertheless unequivocally--in the tradition of the French Encyclopédie that Diderot and d'Alembert had organized from 1751 until 1765. The attempt to accomplish anew such a large-scale project and, in this way, to win the German Empire the kind of intellectual leadership which the Encyclopédie, in historical retrospect, had achieved for the epoch of Enlightenment, required to convince the leading scholars, scientists, and technicians of the nation to participate in the endeavor and to assemble their contributions under a common systematic agenda through which this universal encyclopedia would distinguish itself from all dictionaries and disciplinary encyclopedias. While the Encyclopédie followed to a large extent an empiricist philosophy, Hinneberg trusted in the integrative function of the concept of culture and the ability of his contributors to elucidate the history of their respective disciplines and to connect them with neighboring fields of culture. The present contributions argues that although, from a philosophical point of view, the historicist tack taken by Hinneberg makes the concept of culture quite blurry, it nevertheless provides enough cohesive structure such that the work, even though unfinished as a consequence of war and inflation, represents a faithful picture of its epoch that Hinneberg understands as an epoch of transition.

  6. 《SAGE教育技术百科全书》:走进教育技术的知识本体--访主编迈克尔·斯佩克特博士%The SAGE Encyclopedia of Educational Technology:Into the Ontology of Educational Technology-Interview with Dr. Michael Spector as Chief Editor

    Institute of Scientific and Technical Information of China (English)

    张屹; 徐光涛; 范福兰; 李馨; 赵云建

    2015-01-01

    Editorial Comment: J. Michael Spector is the professor and chair of Learning Technologies in the College of Information at the University of North Texas. he is the chief editor of Educational Technology Research and Development (ETR & D) and Handbook of Research on Educational Communications and Technology (3rd and 4th edition). Spector is one of the ten international leading ifgures in the ifeld of educational technology. He has excellent research in the ifeld of technology integration in education, intelligent support for instructional design, assessing learning in complex domains and distance learning. Dr. Spector has rich experience in teaching and scientific research. He was previously professor of educational psychology and instructional technology at the university of Georgia. Previously, he was professor of learning, education and performance systems at Florida State university. He served as chair of instructional design, development and evaluation at Syracuse university and director of the educational information science and technology research program at the university of Bergen. He is the senior scientist for the air force research laboratory teaching system of American Armstrong. He was a past president of the Association for Educational and Communications Technology (AECT) as well as a past chair of the technology, instruction, cognition and learning special interest group of the American Educational Research Association. He has more than 100 journal articles, book chapters and books to his credit, and he won the AECT award for outstanding book award. The SAGE Encyclopedia of Educational Technology was edited by professor J. Michael Spector and published by SAGE in March 2015. Professor Spector invited the senior editors at SAGE and experts of educational technology, created the initial list of topics based on the 1989 International Encyclopedia of Educational Technology and the online Encyclopedia of Educational Technology at San Diego State

  7. [The biolaw and bioethics encyclopedia].

    Science.gov (United States)

    del Barrio Seoane, Jaime

    2011-01-01

    On 4 April 2011, as part of the XVIII Conference in Law and the Human Genome, the official presentation took place of the first Spanish language Encyclopedia of Biolaw and Bioethics, in an event organised by the Inter-University Chair in Law and the Human Genome held, on this occasion, in the new Auditorium of the University of the Basque Country. The Encyclopedia of Biolaw and Bioethics is a project which was conceived and driven forward by the Inter-University Chair in Law and the Human Genome. It was an ambitious project which was supported by the Roche Institute Foundation. It was therefore a magnum opus which began more than three years ago and which has required the work of more than 200 professionals from various disciplines in Spain, Latin America and Portugal. The encyclopaedia tries to make up for the lack of a suitable publication in the Spanish language that could be used as a reference and be consulted by different experts who have to tackle controversies and doubts posed in the field of biolaw and bioethics as part of their everyday work. The work makes it possible to ascertain the situation in this field regarding the most controversial issues and emerging conflicts, find out which values, assets or rights are involved or confronted, what solutions have been proposed by bioethics and the social positions that have been established through legal regulations. All in all, the encyclopaedia was the culmination of an ambitious undertaking, a pioneering work in the Spanish speaking countries due to its characteristics and scope. It is essential to have such a resource in today's cultural environment. The presentation of the Encyclopedia of Biolaw and Bioethics given by Mr. Del Barrio Seoane as Director General of the Roche Institute Foundation during the Conference deservers a special mention. The project has been consolidated through the support of this institution.

  8. Web-based encyclopedia on physical effects

    Science.gov (United States)

    Papliatseyeu, Andrey; Repich, Maryna; Ilyushonak, Boris; Hurbo, Aliaksandr; Makarava, Katerina; Lutkovski, Vladimir M.

    2004-07-01

    Web-based learning applications open new horizons for educators. In this work we present the computer encyclopedia designed to overcome drawbacks of traditional paper information sources such as awkward search, low update rate, limited copies count and high cost. Moreover, we intended to improve access and search functions in comparison with some Internet sources in order to make it more convenient. The system is developed using modern Java technologies (Jave Servlets, Java Server Pages) and contains systemized information about most important and explored physical effects. It also may be used in other fields of science. The system is accessible via Intranet/Internet networks by means of any up-to-date Internet browser. It may be used for general learning purposes and as a study guide or tutorial for performing laboratory works.

  9. UCLA Plans Online Encyclopedia of Egyptology

    Science.gov (United States)

    Howard, Jennifer

    2006-01-01

    The University of California at Los Angeles (UCLA) has unveiled plans for what appears to be the world's first online, peer-reviewed encyclopedia devoted to ancient Egypt. The "UCLA Encyclopedia of Egypt," which in April won a $325,000 grant from the National Endowment for the Humanities, will include material in Arabic as well as English. The…

  10. UCLA Plans Online Encyclopedia of Egyptology

    Science.gov (United States)

    Howard, Jennifer

    2006-01-01

    The University of California at Los Angeles (UCLA) has unveiled plans for what appears to be the world's first online, peer-reviewed encyclopedia devoted to ancient Egypt. The "UCLA Encyclopedia of Egypt," which in April won a $325,000 grant from the National Endowment for the Humanities, will include material in Arabic as well as…

  11. Dynamics of the Collateral Encyclopedia

    DEFF Research Database (Denmark)

    Thellefsen, Torkild Leo; Sørensen, Bent; Thellefsen, Martin Muderspach

    2015-01-01

    Both Umberto Eco and Charles S. Peirce have been concerned with the notion of background knowledge. Eco refers to background knowledge as the encyclopedia; Peirce’s term of reference is collateral experience. The aim of this article is to investigate the degree to which these two concepts...... are comparable. We focus on one major metaphysical issue, viz. the fact that Eco defines collateral experience, which is the first step in any process of cognition, as private, whereas Peirce, as a realist, would never accept the concept of private thoughts, feelings, etc. We suggest that freeing collateral...... experience from its nominalistic nomenclature makes possible a comparison and synthesis of Eco’s and Peirce’s conceptions when seen from the perspectives of their cognitive type, nuclear type, and molar content....

  12. The Grolier World Encyclopedia of Endangered Species.

    Science.gov (United States)

    Martin, Ron

    1994-01-01

    Reviews "The Grolier World Encyclopedia of Endangered Species" and describes a lesson plan for grades five and six that includes library media skills objectives, science objectives, resources, instructional roles, activity and procedure for completion, evaluation, and follow-up. (LRW)

  13. Concise encyclopedia of history of energy

    CERN Document Server

    2009-01-01

    "The Concise Encyclopedia of the History of Energy" draws together in a single volume a comprehensive account of the field from the prestigious and award-winning "Encyclopedia of Energy" (2004). This volume covers all aspects of energy history with authoritative articles authoritatively contributed and edited by an interdisciplinary team of experts. Extensively revised since the original publication of the "Encylopedia of Energy", this work describes the most interesting historical developments of the past five years in the energy sector. It is a concise desk reference for researchers and those interested in any aspect of the history of energy science. It provides eminently cost-effective access to some of the most interesting articles in "Encyclopedia of Energy". It is significantly revised to accommodate the latest trends in each field of enquiry.

  14. Routledge Encyclopedia of Language Teaching and Learning.

    Science.gov (United States)

    Byram, Michael, Ed.

    This encyclopedia of language teaching and learning is an authoritative handbook dealing with all aspects of this field of study. It has been produced specifically for language teaching professionals, but can also be used as a general reference work for academic studies at a postgraduate level. A comprehensive range of articles on contemporary…

  15. Reach for Reference: A New Early Encyclopedia

    Science.gov (United States)

    Safford, Barbara Ripp

    2005-01-01

    This article reviews the new Grolier Student Encyclopedia, intended for grades three through eight. Good middle-level readers might become frustrated with this source, but primary and intermediate students, middle-level students reading below grade level, and English language learners of any age will find the style of information presentation…

  16. Encyclopedia of African-American Education.

    Science.gov (United States)

    Jones-Wilson, Faustine C., Ed.; And Others

    This encyclopedia is a comprehensive reference tool for researchers, teachers, scholars, students, and laypersons who need information under a single cover on significant issues, policies, historical events, laws, theories, organizations, institutions, and people incident to the education of African Americans. This population is unique in that its…

  17. The American Indian: A Multimedia Encyclopedia.

    Science.gov (United States)

    Carter, Christina E.

    1993-01-01

    Reviews "The American Indian: A Multimedia Encyclopedia," Version 1.0 (New York, Facts on File, Inc., 1993). This electronic product (compact disk) presents a great amount of material on American Indians from various formats, but its effectiveness is limited by the dated nature of some materials. Software design and searching features are…

  18. Encyclopedia of Information Ethics and Security

    Directory of Open Access Journals (Sweden)

    Reviewed by Yavuz AKBULUT

    2008-01-01

    Full Text Available 233Rapid developments in information andcommunication technologies have created newsecurity threats along with ethical dilemmas. Thesedevelopments have been so fast that appropriatesecurity precautions and ethical codes fail to keeppace with the technological developments. In thisrespect, education of both professionals andordinary citizens regarding information technologyethics carries utmost importance. Encyclopedia ofInformation Ethics and Security serves as anauthentic and comprehensive reference source onsecurity and ethical issues related to informationand communication technologies. The encyclopediais consisted of 661 pages (+xvii covering a total of95 alphabetically ordered chapters on informationethics and security, which are followed by twocomprehensive sets of indexes. Each entry is anauthoritative contribution followed by in-depthdefinitions of relevant terminology and acronyms.The total number of key terms included in the encyclopedia is approximately 700. Thesource also includes more than 2000 references to existing literature on ethical andsecurity issues related to information and communication technologies. A total of 148respected scholars and leading experts all around the world contributed to the source.As indicated in the preface of the encyclopedia by editor, all entries were subjected toan initial double-blind peer review and an additional review prior to acceptance forpublication. Chapters mostly have parallel layouts beginning with a clear introductionfollowed by the theoretical background and the contribution. Each chapter concludeswith invaluable ethical implications for the field along with suggestions for furtherThe editor, Marian Quigley (PhD – Monash University, Australia; BA – ChisholmInstitute of Technology, Australia; Higher Diploma of Teaching Secondary [Art andCraft] is a former senior lecturer in the Faculty of Information Technology, MonashUniversity, Australia. She primarily works on the social effects

  19. The Treatment of the Occult in General Encyclopedias.

    Science.gov (United States)

    Sonnenfeld, Gary F.

    This paper is a content analysis of three general encyclopedias, "Encyclopedia Americana" (EA), "Encyclopaedia Brittanica" (EB), and "World Book Encyclopedia" (WBC), which quantifies the treatment of the occult. Entries are selected from each by starting with the article "Occultism" and tracing all…

  20. Advanced imaging approaches for regenerative medicine: Emerging technologies for monitoring stem cell fate in vitro and in vivo.

    Science.gov (United States)

    Kupfer, Molly E; Ogle, Brenda M

    2015-10-01

    The future of regenerative medicine relies on our ability to control stem cell fate in order to produce functional tissues. Stem cells are the preferred cell source for tissue engineering endeavors and regenerative medicine therapies due to their high potency and capacity for expansion. However, their potency also makes them very difficult to control, as they are in a constant state of flux. Therefore, in order to advance research in regenerative medicine, it is necessary to be able to monitor cell state and phenotype both in vitro and in vivo. This review will detail the imaging technologies currently in use to monitor stem cell phenotype, migration, and differentiation. In addition to providing examples of the most recent work in this area, we will also discuss the future of imaging technologies for regenerative medicine, and how current imaging modalities might be utilized to image specific cell functionality in order to track stem cell fate. The research area of imaging stem cells is progressing toward identifying mature and differentiating cells not only by phenotypic markers, but also by visualizing cell function. Many of the cutting-edge modalities detailed in this review have the potential to be harnessed toward this goal.

  1. Encyclopedia of complexity and systems science

    OpenAIRE

    2012-01-01

    Encyclopedia of Complexity and Systems Science provides an authoritative single source for understanding and applying the concepts of complexity theory together with the tools and measures for analyzing complex systems in all fields of science and engineering. The science and tools of complexity and systems science include theories of self-organization, complex systems, synergetics, dynamical systems, turbulence, catastrophes, instabilities, nonlinearity, stochastic processes, chaos, neural n...

  2. 中国医药数字图书馆资源介绍之三Kirk-Othmer Encyclopedia of Chemical Technology(第四版)数据库介绍

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    @@ 在化学化工领域中,Kirk-Othmer Encyclopedia of Chemical Techno1ogy无疑是一部具有重要参考价值的大型参考工具书.它主要介绍各种重要化工产品的性质、制法、近期的经济信息、分析与规格、毒性与安全性以及用途等有关内容,同时还对化学化工的基本原理、化工单元操作和流程等问题进行了探讨.

  3. Islamic Context of Electronic Encyclopedias in English Language: A Critical Evaluation

    Directory of Open Access Journals (Sweden)

    Sajjad ur Rehman

    1999-12-01

    Full Text Available A systematic evaluation of Islam and Muslim world in electronic encyclopedias was conducted by using two-dimensional criteria: searching and technological capabilities, and qualitative evaluation of their content. The factors used to assess searching and technological capabilities are related to direct link, hypertext, related articles, illustration, multimedia, Boolean searching, Internet links, and search history. Content evaluation was conducted in relation to length, scope, treatment level, currency, accuracy, bias, presentation, authorship, and bibliographic documentation. The researchers identified topics that are expected to be valid indicators of the coverage and treatment of Islam and the Muslim world. Some topics are related to theological doctrines, while the others pertained to socio-historical themes. Altogether 21 topics were searched in each title. Five encyclopedias used the same terminology for certain topics, while broader or narrower terms were used for other titles. Total articles thus identified were in the range of 13 to 19. As the search was conducted for a topic, search-related data were noted. Printouts of the identified articles were obtained, and evaluated against specific criteria. It has been found that each encyclopedia has its specific strengths in regard to software and searching capabilities. In content evaluation, it was found that about 30-40% of articles in each encyclopedia had problems with regard to accuracy of information objectivity, coverage, and presentation.

  4. A blueprint for engineering cell fate: current technologies to reprogram cell identity

    Institute of Scientific and Technical Information of China (English)

    Samantha A Morris; George Q Daley

    2013-01-01

    Human diseases such as heart failure,diabetes,neurodegenerative disorders,and many others result from the deficiency or dysfunction of critical cell types.Strategies for therapeutic tissue repair or regeneration require the in vitro manufacture of clinically relevant quantities of defined cell types.In addition to transplantation therapy,the generation of otherwise inaccessible cells also permits disease modeling,toxicology testing and drug discovery in vitro.In this review,we discuss current strategies to manipulate the identity of abundant and accessible cells by differentiation from an induced pluripotent state or direct conversion between differentiated states.We contrast these approaches with recent advances employing partial reprogramming to facilitate lineage switching,and discuss the mechanisms underlying the engineering of cell fate.Finally,we address the current limitations of the field and how the resulting cell types can be assessed to ensure the production of medically relevant populations.

  5. The Riken mouse genome encyclopedia project.

    Science.gov (United States)

    Hayashizaki, Yoshihide

    2003-01-01

    The Riken mouse genome encyclopedia a comprehensive full-length cDNA collection and sequence database. High-level functional annotation is based on sequence homology search, expression profiling, mapping and protein-protein interactions. More than 1000000 clones prepared from 163 tissues were end-sequenced and classified into 128000 clusters, and 60000 representative clones were fully sequenced representing 24000 clear protein-encoding genes. The application of the mouse genome database for positional cloning and gene network regulation analysis is reported.

  6. The ENCODE (ENCyclopedia Of DNA Elements) Project.

    Science.gov (United States)

    2004-10-22

    The ENCyclopedia Of DNA Elements (ENCODE) Project aims to identify all functional elements in the human genome sequence. The pilot phase of the Project is focused on a specified 30 megabases (approximately 1%) of the human genome sequence and is organized as an international consortium of computational and laboratory-based scientists working to develop and apply high-throughput approaches for detecting all sequence elements that confer biological function. The results of this pilot phase will guide future efforts to analyze the entire human genome.

  7. A user's guide to the encyclopedia of DNA elements (ENCODE).

    Science.gov (United States)

    2011-04-01

    The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biology and improve health. The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. In the process, standards to ensure high-quality data have been implemented, and novel algorithms have been developed to facilitate analysis. Data and derived results are made available through a freely accessible database. Here we provide an overview of the project and the resources it is generating and illustrate the application of ENCODE data to interpret the human genome.

  8. Encyclopedia of 20th-Century American Humor.

    Science.gov (United States)

    Nilsen, Alleen Pace; Nilsen, Don L. F.

    This reference encyclopedia contains information on both the historical and contemporary aspects of humor and comedy in the United States. Arranged in an A-to-Z format, the encyclopedia is a collection of article-length essays that examine humor from many perspectives, from defining terms; to providing information on humor writers, comedians, and…

  9. Kaspar Schott's "encyclopedia of all mathematical sciences"

    Science.gov (United States)

    Knobloch, Eberhard

    2011-06-01

    In 1661, Kaspar Schott published his comprehensive textbook "Cursus mathematicus" in Würzburg for the first time, his "Encyclopedia of all mathematical sciences". It was so successful that it was published again in 1674 and 1677. In its 28 books, Schott gave an introduction for beginners in 22 mathematical disciplines by means of 533 figures and numerous tables. He wanted to avoid the shortness and the unintelligibility of his predecessors Alsted and Hérigone. He cited or recommended far more than hundred authors, among them Protestants like Michael Stifel and Johannes Kepler, but also Catholics like Nicolaus Copernicus. The paper gives a survey of this work and explains especially interesting aspects: The dedication to the German emperor Leopold I., Athanasius Kircher's letter of recommendation as well as Schott's classification of sciences, explanations regarding geometry, astronomy, and algebra.

  10. Summarization of an online medical encyclopedia.

    Science.gov (United States)

    Fiszman, Marcelo; Rindflesch, Thomas C; Kilicoglu, Halil

    2004-01-01

    We explore a knowledge-rich (abstraction) approach to summarization and apply it to multiple documents from an online medical encyclopedia. A semantic processor functions as the source interpreter and produces a list of predications. A transformation stage then generalizes and condenses this list, ultimately generating a conceptual condensate for a given disorder topic. We provide a preliminary evaluation of the quality of the condensates produced for a sample of four disorders. The overall precision of the disorder conceptual condensates was 87%, and the compression ratio from the base list of predications to the final condensate was 98%. The conceptual condensate could be used as input to a text generator to produce a natural language summary for a given disorder topic.

  11. Encyclopedia of Complexity and Systems Science

    CERN Document Server

    Meyers, Robert A

    2009-01-01

    Encyclopedia of Complexity and Systems Science provides an authoritative single source for understanding and applying the concepts of complexity theory together with the tools and measures for analyzing complex systems in all fields of science and engineering. The science and tools of complexity and systems science include theories of self-organization, complex systems, synergetics, dynamical systems, turbulence, catastrophes, instabilities, nonlinearity, stochastic processes, chaos, neural networks, cellular automata, adaptive systems, and genetic algorithms. Examples of near-term problems and major unknowns that can be approached through complexity and systems science include: The structure, history and future of the universe; the biological basis of consciousness; the integration of genomics, proteomics and bioinformatics as systems biology; human longevity limits; the limits of computing; sustainability of life on earth; predictability, dynamics and extent of earthquakes, hurricanes, tsunamis, and other n...

  12. Resource Geopolitics: Cold War Technologies, Global Fertilizers, and the Fate of Western Sahara.

    Science.gov (United States)

    Camprubí, Lino

    2015-07-01

    When, after years of geological and geophysical exploration, a phosphate mine was discovered at Bu-Craa in 1964, Western Sahara received renewed geopolitical attention. Several countries competing for the control of the world fertilizer market, including Morocco, Spain, France, and the United States, developed diverging strategies to gain control of the mineral. After intense negotiations revolving around the materiality of mining technologies and involving reserve estimations, sabotage, and flexing of diplomatic muscles, Morocco took over the Spanish colony in 1975. While this secured Morocco's place in the world market, it condemned the local population to exile and domination. This article explores three technological stages of the exploitation of phosphate in Western Sahara that underpin the geopolitical history. This perspective yields new visions of cold war technology and postcolonial markets.

  13. Kirk-Othmer Encyclopedia of Chemical Technology数据库介绍及实例

    Institute of Scientific and Technical Information of China (English)

    许旱峤; 杨舸

    2007-01-01

    介绍了Kirk-Othmer Encyclopedia of Chemical Technology(化工技术百科全书)(第五版)电子图书网络版数据库,并对该数据库使用方法和检索途径作出了说明,且结合实例简单地介绍了该数据库的检索方法.

  14. Antibiotic resistance genes fate and removal by a technological treatment solution for water reuse in agriculture.

    Science.gov (United States)

    Luprano, Maria Laura; De Sanctis, Marco; Del Moro, Guido; Di Iaconi, Claudio; Lopez, Antonio; Levantesi, Caterina

    2016-11-15

    In order to mitigate the potential effects on the human health which are associated to the use of treated wastewater in agriculture, antibiotic resistance genes (ARGs) are required to be carefully monitored in wastewater reuse processes and their spread should be prevented by the development of efficient treatment technologies. Objective of this study was the assessment of ARGs reduction efficiencies of a novel technological treatment solution for agricultural reuse of municipal wastewaters. The proposed solution comprises an advanced biological treatment (Sequencing Batch Biofilter Granular Reactor, SBBGR), analysed both al laboratory and pilot scale, followed by sand filtration and two different disinfection final stages: ultraviolet light (UV) radiation and peracetic acid (PAA) treatments. By Polymerase Chain Reaction (PCR), the presence of 9 ARGs (ampC, mecA, ermB, sul1, sul2, tetA, tetO, tetW, vanA) were analysed and by quantitative PCR (qPCR) their removal was determined. The obtained results were compared to the reduction of total bacteria (16S rDNA gene) and of a faecal contamination indicator (Escherichia coli uidA gene). Only four of the analysed genes (ermB, sul1, sul2, tetA) were detected in raw wastewater and their abundance was estimated to be 3.4±0.7 x10(4) - 9.6±0.5 x10(9) and 1.0±0.3 x10(3) to 3.0±0.1 x10(7) gene copies/mL in raw and treated wastewaters, respectively. The results show that SBBGR technology is promising for the reduction of ARGs, achieving stable removal performance ranging from 1.0±0.4 to 2.8±0.7 log units, which is comparable to or higher than that reported for conventional activated sludge treatments. No reduction of the ARGs amount normalized to the total bacteria content (16S rDNA), was instead obtained, indicating that these genes are removed together with total bacteria and not specifically eliminated. Enhanced ARGs removal was obtained by sand filtration, while no reduction was achieved by both UV and PAA disinfection

  15. KEGG: kyoto encyclopedia of genes and genomes.

    Science.gov (United States)

    Kanehisa, M; Goto, S

    2000-01-01

    KEGG (Kyoto Encyclopedia of Genes and Genomes) is a knowledge base for systematic analysis of gene functions, linking genomic information with higher order functional information. The genomic information is stored in the GENES database, which is a collection of gene catalogs for all the completely sequenced genomes and some partial genomes with up-to-date annotation of gene functions. The higher order functional information is stored in the PATHWAY database, which contains graphical representations of cellular processes, such as metabolism, membrane transport, signal transduction and cell cycle. The PATHWAY database is supplemented by a set of ortholog group tables for the information about conserved subpathways (pathway motifs), which are often encoded by positionally coupled genes on the chromosome and which are especially useful in predicting gene functions. A third database in KEGG is LIGAND for the information about chemical compounds, enzyme molecules and enzymatic reactions. KEGG provides Java graphics tools for browsing genome maps, comparing two genome maps and manipulating expression maps, as well as computational tools for sequence comparison, graph comparison and path computation. The KEGG databases are daily updated and made freely available (http://www. genome.ad.jp/kegg/).

  16. An encyclopedia of mouse DNA elements (Mouse ENCODE).

    Science.gov (United States)

    Stamatoyannopoulos, John A; Snyder, Michael; Hardison, Ross; Ren, Bing; Gingeras, Thomas; Gilbert, David M; Groudine, Mark; Bender, Michael; Kaul, Rajinder; Canfield, Theresa; Giste, Erica; Johnson, Audra; Zhang, Mia; Balasundaram, Gayathri; Byron, Rachel; Roach, Vaughan; Sabo, Peter J; Sandstrom, Richard; Stehling, A Sandra; Thurman, Robert E; Weissman, Sherman M; Cayting, Philip; Hariharan, Manoj; Lian, Jin; Cheng, Yong; Landt, Stephen G; Ma, Zhihai; Wold, Barbara J; Dekker, Job; Crawford, Gregory E; Keller, Cheryl A; Wu, Weisheng; Morrissey, Christopher; Kumar, Swathi A; Mishra, Tejaswini; Jain, Deepti; Byrska-Bishop, Marta; Blankenberg, Daniel; Lajoie, Bryan R; Jain, Gaurav; Sanyal, Amartya; Chen, Kaun-Bei; Denas, Olgert; Taylor, James; Blobel, Gerd A; Weiss, Mitchell J; Pimkin, Max; Deng, Wulan; Marinov, Georgi K; Williams, Brian A; Fisher-Aylor, Katherine I; Desalvo, Gilberto; Kiralusha, Anthony; Trout, Diane; Amrhein, Henry; Mortazavi, Ali; Edsall, Lee; McCleary, David; Kuan, Samantha; Shen, Yin; Yue, Feng; Ye, Zhen; Davis, Carrie A; Zaleski, Chris; Jha, Sonali; Xue, Chenghai; Dobin, Alex; Lin, Wei; Fastuca, Meagan; Wang, Huaien; Guigo, Roderic; Djebali, Sarah; Lagarde, Julien; Ryba, Tyrone; Sasaki, Takayo; Malladi, Venkat S; Cline, Melissa S; Kirkup, Vanessa M; Learned, Katrina; Rosenbloom, Kate R; Kent, W James; Feingold, Elise A; Good, Peter J; Pazin, Michael; Lowdon, Rebecca F; Adams, Leslie B

    2012-08-13

    To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

  17. What Future for Traditional Encyclopedias in the Age of Wikipedia?

    Directory of Open Access Journals (Sweden)

    Michael Upshall

    2014-06-01

    Full Text Available The launch and rapid domination of Wikipedia as a reference tool for the Internet was as dramatic as it was unexpected. Wikipedia broke so many of the rules of reference publishing, which, even if not formally codified, had been widely accepted for many years: the use of (usually named authorities as expert contributors, and the presence of moderating editors to ensure balanced struc-ture. All this appeared to have been swept away with Wikipedia, and, not least because Wikipedia content is given away rather than sold, the competition between Wikipedia and most general-purpose encyclopedias was a sad and rather one-sided affair. One by one the existing commercial print general encyclopedias admitted defeat; among the latest is Brockhaus, the leading German encyclopedia brand, which ended publication early in 2013.

  18. Land of 10,000 Facts: Minnesota's New Digital Encyclopedia

    Directory of Open Access Journals (Sweden)

    Molly Huber

    2014-06-01

    Full Text Available Mnopedia is the recently created, born digital encyclopedia of the state of Minnesota. It is a project of the Minnesota Historical Society (MNHS, the state's leading cultural heritage institution and one of the largest and oldest historical societies in the nation. The MNHS has been in existence since 1849 and tells the story of Minnesota's past through exhibitions, extensive libraries and collections, twenty-six historic sites, educational programs, book publishing, and both financial and inkind assistance to county and local historical societies throughout the state. It provides a strong base for an encyclopedia to grow from.

  19. The encyclopedia of southern Appalachian forest ecosystems: A prototype of an online scientific knowledge management system

    Science.gov (United States)

    Deborah K. Kennard; H. Michael Rauscher; Patricia A. Flebbe; Daniel L. Schmoldt; William G. Hubbard; J. Bryan Jordin; William Milnor

    2003-01-01

    The Encyclopedia of Southern Appalachian Forest Ecosystems (ESAFE), a hyperdocument-based encyclopedia system available on the Internet, provides an organized synthesis of existing research on the management and ecology of Southern Appalachian forests ecosystems. The encyclopedia is dynamic, so that new or revised content can be submitted directly through the Internet...

  20. The Encyclopedia of Seeds: Science Technology and Uses

    Science.gov (United States)

    Seed deteriorate during storage and the nature and kinetics of deteriorative reactions depend on seed traits and the relative humidity and temperature at which seeds are stored. Aging reactions are hypothesized to involve oxidations. The temperature-dependency of reactions are described by Arrheni...

  1. Encyclopedia of electrochemistry. Vol. 5. Electrochemical engineering

    Energy Technology Data Exchange (ETDEWEB)

    Bard, A.J. [Texas Univ., Austin, TX (United States). Dept. of Chemistry; Stratmann, M. [Max-Planck-Institut fuer Eisenforschung GmbH, Duesseldorf (Germany); Macdonald, D. [Pennsylvania State Univ., University Park, PA (United States). Center for Electrochemical Science and Engineering; Schmuki, P. (eds.) [Erlangen-Nuernberg Univ., Erlangen (Germany). Dept. of Material Science

    2007-07-01

    This volume contains the following chapters: 1. Technical scale of electrochemistry; 2. Electrocatalysis; 3. Electrochemical composition; 4. Electrowinning of metals; 5. Electrowinning of other inorganic compounds; 6. Electrochemistry applied to organic synthesis: Principles and main achievements; 7. Batteries: Basic principles, technologies, and modeling; 8. Fuel cells; 9. The electrochemistry of nuclear reactor coolant circuits; 10. Electrochemical techniques for studying high-temperature subcritical and supercritical aqueous solutions; 11. Electrochemistry of silicon etching; 12. Electrochemical machining; 13. Environmental chemistry.

  2. Encyclopedia of applied and computational mathematics

    CERN Document Server

    2015-01-01

    EACM is a comprehensive reference work covering the vast field of applied and computational mathematics. Applied mathematics itself accounts for at least 60 per cent of mathematics, and the emphasis on computation reflects the current and constantly growing importance of computational methods in all areas of applications. EACM emphasizes the strong links of applied mathematics with major areas of science, such as physics, chemistry, biology, and computer science, as well as specific fields like atmospheric ocean science. In addition, the mathematical input to modern engineering and technology form another core component of EACM.

  3. [Research on origin and evolution of Wan Mizhai's Medical Encyclopedia].

    Science.gov (United States)

    Mao, D

    1996-05-01

    This encyclopedia was lost early in the Ming dynasty. The current edition was blockprinted by Wan's fifth generation grandson in 1654-1659, then comes the next edition of Zhang Tanyi Shilu Tang of Hanyang edition blockprinted in 1712. Next comes Hu Leuqing Wei Tang of Jinxi's edition blockprinted in 1724, which was interpolatedly reprinted by Fuwentang, Tongrentang. The latter was entitled Wan Mizhai's Medical Encyclopedia when blockprinted in 1741. After 1778, there was also a Zhongxintang edition with unknown printed time. The modern printed edition of Luotian revised edition was printed in 1981-1986. The above editions are verified by textual research and material books by describing their printing, edition features and mutual relationship between its origin and development. Errors of printing of some editions are also dealt with.

  4. Interpreting hypernymic propositions in an online medical encyclopedia.

    Science.gov (United States)

    Fiszman, Marcelo; Rindflesch, Thomas C; Kilicoglu, Halil

    2003-01-01

    Interpretation of semantic propositions from bio-medical texts documents would provide valuable support to natural language processing (NLP) applications. We are developing a methodology to interpret a kind of semantic proposition, the hypernymic proposition, in MEDLINE abstracts. In this paper, we expanded the system to identify these structures in a different discourse domain: the Medical Encyclopedia from the National Library of Medi-cine's MEDLINEplus Website.

  5. Expansion of the Genomic Encyclopedia of Bacteria and Archaea

    Energy Technology Data Exchange (ETDEWEB)

    Rinke, Christian; Sczyrba, Alex; Malfatti, Stephanie; Lee, Janey; Cheng, Jan-Fang; Stepanauskas, Ramunas; Eisen, Jonathan A.; Hallam, Steven; Inskeep, William P.; Hedlund, Brian P.; Sievert, Stefan M.; Liu, Wen-Tso; Tsiamis, George; Hugenholtz, Philip; Woyke, Tanja

    2011-06-02

    To date the vast majority of bacterial and archaeal genomes sequenced are of rather limited phylogenetic diversity as they were chosen based on their physiology and/ or medical importance. The Genomic Encyclopedia of Bacteria and Archaea (GEBA) project (Wu et al. 2009) is aimed at systematically filling the gaps of the tree of life with phylogenetically diverse reference genomes. However more than 99 percent of microorganisms elude current culturing attempts, severely limiting the ability to recover complete or even partial genomes of these largely mysterious species. These limitations gave rise to the GEBA uncultured project. Here we propose to use single cell genomics to massively expand the Genomic Encyclopedia of Bacteria and Archaea by targeting 80 single cell representatives of uncultured candidate phyla which have no or very few cultured representatives. Generating these reference genomes of uncultured microbes will dramatically increase the discovery rate of novel protein families and biological functions, shed light on the numerous underrepresented phyla that likely play important roles in the environment, and will assist in improving the reconstruction of the evolutionary history of Bacteria and Archaea. Moreover, these data will improve our ability to interpret metagenomics sequence data from diverse environments, which will be of tremendous value for microbial ecology and evolutionary studies to come.

  6. Expansion of the Genomic Encyclopedia of Bacteria and Archaea

    Energy Technology Data Exchange (ETDEWEB)

    Rinke, Christian; Sczyrba, Alex; Malfatti, Stephanie; Lee, Janye; Cheng, Jan-Fang; Stepanauskas, Ramunas; Eisen, Jonathan A.; Hallam, Steven; Inskeep, William P.; Hedlund, Brian P.; Sievert, Stefan M.; Liu, Wen-Tso; Tsiamis, George; Hugenholtz, Philip; Woyke, Tanja

    2011-03-20

    To date the vast majority of bacterial and archaeal genomes sequenced are of rather limited phylogenetic diversity as they were chosen based on their physiology and/ or medical importance. The Genomic Encyclopedia of Bacteria and Archaea (GEBA) project (Wu et al. 2009) is aimed to systematically filling the gaps of the tree of life with phylogenetically diverse reference genomes. However more than 99percent of microorganisms elude current culturing attempts, severely limiting the ability to recover complete or even partial genomes of these largely mysterious species. These limitations gave rise to the GEBA uncultured project. Here we propose to use single cell genomics to massively expand the Genomic Encyclopedia of Bacteria and Archaea by targeting 80 single cell representatives of uncultured candidate phyla which have no or very few cultured representatives. Generating these reference genomes of uncultured microbes will dramatically increase the discovery rate of novel protein families and biological functions, shed light on the numerous underrepresented phyla that likely play important roles in the environment, and will assist in improving the reconstruction of the evolutionary history of Bacteria and Archaea. Moreover, these data will improve our ability to interpret metagenomics sequence data from diverse environments, which will be of tremendous value for microbial ecology and evolutionary studies to come.

  7. Encyclopedia of Native American Jewelry: A Guide to History, People, and Terms.

    Science.gov (United States)

    Baxter, Paula A.

    A current guide to significant people, techniques, design motifs, materials, and forms, this comprehensive encyclopedia covers Native American jewelry making from the first contact with the Europeans to the present, focusing primarily on the last 150 years of Native American jewelry making. The encyclopedia contains 350 cross-referenced entries…

  8. Encyclopedia of Native American Jewelry: A Guide to History, People, and Terms.

    Science.gov (United States)

    Baxter, Paula A.

    A current guide to significant people, techniques, design motifs, materials, and forms, this comprehensive encyclopedia covers Native American jewelry making from the first contact with the Europeans to the present, focusing primarily on the last 150 years of Native American jewelry making. The encyclopedia contains 350 cross-referenced entries…

  9. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism.

    Science.gov (United States)

    Karp, P D; Riley, M; Paley, S M; Pellegrini-Toole, A; Krummenacker, M

    1998-01-01

    The encyclopedia of Escherichia coli genes and metabolism (EcoCyc) is a database that combines information about the genome and the intermediary metabolism of E.coli. The database describes 3030 genes of E.coli , 695 enzymes encoded by a subset of these genes, 595 metabolic reactions that occur in E.coli, and the organization of these reactions into 123 metabolic pathways. The EcoCyc graphical user interface allows scientists to query and explore the EcoCyc database using visualization tools such as genomic-map browsers and automatic layouts of metabolic pathways. EcoCyc can be thought of as an electronic review article because of its copious references to the primary literature, and as a (qualitative) computational model of E.coli metabolism. EcoCyc is available at URL http://ecocyc.PangeaSystems.com/ecocyc/

  10. An integrated encyclopedia of DNA elements in the human genome.

    Science.gov (United States)

    2012-09-01

    The human genome encodes the blueprint of life, but the function of the vast majority of its nearly three billion bases is unknown. The Encyclopedia of DNA Elements (ENCODE) project has systematically mapped regions of transcription, transcription factor association, chromatin structure and histone modification. These data enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions. Many discovered candidate regulatory elements are physically associated with one another and with expressed genes, providing new insights into the mechanisms of gene regulation. The newly identified elements also show a statistical correspondence to sequence variants linked to human disease, and can thereby guide interpretation of this variation. Overall, the project provides new insights into the organization and regulation of our genes and genome, and is an expansive resource of functional annotations for biomedical research.

  11. Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

    Directory of Open Access Journals (Sweden)

    Overbeek Ross

    2010-09-01

    Full Text Available Abstract Background Carbohydrates are a primary source of carbon and energy for many bacteria. Accurate projection of known carbohydrate catabolic pathways across diverse bacteria with complete genomes constitutes a substantial challenge due to frequent variations in components of these pathways. To address a practically and fundamentally important challenge of reconstruction of carbohydrate utilization machinery in any microorganism directly from its genomic sequence, we combined a subsystems-based comparative genomic approach with experimental validation of selected bioinformatic predictions by a combination of biochemical, genetic and physiological experiments. Results We applied this integrated approach to systematically map carbohydrate utilization pathways in 19 genomes from the Shewanella genus. The obtained genomic encyclopedia of sugar utilization includes ~170 protein families (mostly metabolic enzymes, transporters and transcriptional regulators spanning 17 distinct pathways with a mosaic distribution across Shewanella species providing insights into their ecophysiology and adaptive evolution. Phenotypic assays revealed a remarkable consistency between predicted and observed phenotype, an ability to utilize an individual sugar as a sole source of carbon and energy, over the entire matrix of tested strains and sugars. Comparison of the reconstructed catabolic pathways with E. coli identified multiple differences that are manifested at various levels, from the presence or absence of certain sugar catabolic pathways, nonorthologous gene replacements and alternative biochemical routes to a different organization of transcription regulatory networks. Conclusions The reconstructed sugar catabolome in Shewanella spp includes 62 novel isofunctional families of enzymes, transporters, and regulators. In addition to improving our knowledge of genomics and functional organization of carbohydrate utilization in Shewanella, this study led to a

  12. Reol: R interface to the Encyclopedia of Life.

    Science.gov (United States)

    Banbury, Barbara L; O'Meara, Brian C

    2014-06-01

    The Encyclopedia of Life is a website that hosts information about life on Earth. Its mission is to increase awareness and understanding of living nature through a freely accessible digital source. Information is publicly available through graphical webpages (browser interface) or through an application programming interface (API). We developed Reol, an open-source package for the R environment, which downloads data from the EOL API, searches for and extracts specific information, and builds tables with quantitative data and/or hierarchical classifications. We provide a detailed description how Reol can be used as a bridge between the R environment and the EOL API to extract quantitative or hierarchical content. It will be particularly useful for researchers who want information about taxonomic groups of interest (for example: how much information is known about flatworm species? What are the taxonomic synonyms for bird species?) or construct a taxonomic tree. Reol is a tool for researchers who wish to download and gather data from EOL or its provider pages. We provide numerous functions within R for downloading, gathering data in different forms, creating taxonomic trees, and plotting data, which work with functions already available through various packages. It joins a growing body of R packages that interact with web-based APIs to streamline data acquisition, thereby easing the analysis of large publicly available datasets.

  13. Tumor suppressors status in cancer cell line Encyclopedia.

    Science.gov (United States)

    Sonkin, Dmitriy; Hassan, Mehedi; Murphy, Denis J; Tatarinova, Tatiana V

    2013-08-01

    Tumor suppressors play a major role in the etiology of human cancer, and typically achieve a tumor-promoting effect upon complete functional inactivation. Bi-allelic inactivation of tumor suppressors may occur through genetic mechanisms (such as loss of function mutation, copy number (CN) loss, or loss of heterozygosity (LOH)), epigenetic mechanisms (such as promoter methylation or histone modification), or a combination of the two. We report systematically derived status of 69 known or putative tumor suppressors, across 799 samples of the Cancer Cell Line Encyclopedia. In order to generate such resource we constructed a novel comprehensive computational framework for the assessment of tumor suppressor functional "status". This approach utilizes several orthogonal genomic data types, including mutation data, copy number, LOH and expression. Through correlation with additional data types (compound sensitivity and gene set activity) we show that this integrative method provides a more accurate assessment of tumor suppressor status than can be inferred by expression, copy number, or mutation alone. This approach has the potential for a more realistic assessment of tumor suppressor genes for both basic and translational oncology research.

  14. Computing text semantic relatedness using the contents and links of a hypertext encyclopedia

    OpenAIRE

    Yazdani, Majid; Popescu-Belis, Andrei

    2013-01-01

    We propose a method for computing semantic relatedness between words or texts by using knowledge from hypertext encyclopedias such as Wikipedia. A network of concepts is built by filtering the encyclopedia's articles, each concept corresponding to an article. Two types of weighted links between concepts are considered: one based on hyperlinks between the texts of the articles, and another one based on the lexical similarity between them. We propose and implement an efficient random walk algor...

  15. Chemical information media in the chemistry lecture hall: a comparative assessment of two online encyclopedias.

    Science.gov (United States)

    Korosec, Lukas; Limacher, Peter Andreas; Lüthi, Hans Peter; Brändle, Martin Paul

    2010-01-01

    The chemistry encyclopedia Römpp Online and the German universal encyclopedia Wikipedia were assessed by first-year university students on the basis of a set of 30 articles about chemical thermodynamics. Criteria with regard to both content and form were applied in the comparison; 619 ratings (48% participation rate) were returned. While both encyclopedias obtained very good marks and performed nearly equally with regard to their accuracy, the average overall mark for Wikipedia was better than for Römpp Online, which obtained lower marks with regard to completeness and length. Analysis of the results and participants' comments shows that students attach importance to completeness, length and comprehensibility rather than accuracy, and also attribute less value to the availability of sources which validate an encyclopedia article. Both encyclopedias can be promoted as a starting reference to access a topic in chemistry. However, it is recommended that instructors should insist that students do not rely solely on encyclopedia texts, but use and cite primary literature in their reports.

  16. Intellectual Interchanges in the History of Massive Online Open-editing Encyclopedia, Wikipedia

    CERN Document Server

    Yun, Jinhyuk; Jeong, Hawoong

    2016-01-01

    Wikipedia is a free Internet encyclopedia with enormous amount of contents. This encyclopedia is written by volunteers with various backgrounds in a collective fashion; anyone can access and edit most of the articles. This open editing nature may give us prejudice that Wikipedia is unstable and unreliable sources; yet many studies suggest that Wikipedia is even more accurate and self-consistent than traditional encyclopedias. Scholars have attempted to understand such extraordinary credibility, but usually used the edit number without consideration of real-time. In this work, we probe the formation of such collective intelligence through the systematic analysis using the entire history of 34,534,110 English Wikipedia articles, between 2001 and 2014. From this massive data set, we observe the universality of both timewise and lengthwise editing scales, which suggests that it is essential to consider the real-time dynamics. By considering real-time, we find the existence of various growth patterns that are unob...

  17. Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project.

    Science.gov (United States)

    Kyrpides, Nikos C; Woyke, Tanja; Eisen, Jonathan A; Garrity, George; Lilburn, Timothy G; Beck, Brian J; Whitman, William B; Hugenholtz, Phil; Klenk, Hans-Peter

    2014-06-15

    The Genomic Encyclopedia of Bacteria and Archaea (GEBA) project was launched by the JGI in 2007 as a pilot project with the objective of sequencing 250 bacterial and archaeal genomes. The two major goals of that project were (a) to test the hypothesis that there are many benefits to the use the phylogenetic diversity of organisms in the tree of life as a primary criterion for generating their genome sequence and (b) to develop the necessary framework, technology and organization for large-scale sequencing of microbial isolate genomes. While the GEBA pilot project has not yet been entirely completed, both of the original goals have already been successfully accomplished, leading the way for the next phase of the project. Here we propose taking the GEBA project to the next level, by generating high quality draft genomes for 1,000 bacterial and archaeal strains. This represents a combined 16-fold increase in both scale and speed as compared to the GEBA pilot project (250 isolate genomes in 4+ years). We will follow a similar approach for organism selection and sequencing prioritization as was done for the GEBA pilot project (i.e. phylogenetic novelty, availability and growth of cultures of type strains and DNA extraction capability), focusing on type strains as this ensures reproducibility of our results and provides the strongest linkage between genome sequences and other knowledge about each strain. In turn, this project will constitute a pilot phase of a larger effort that will target the genome sequences of all available type strains of the Bacteria and Archaea.

  18. 传统百科全书与网络百科的比较研究%Comparative Analysis between Traditional Encyclopedia and Online Encyclopedia

    Institute of Scientific and Technical Information of China (English)

    彭程

    2012-01-01

    随着数字化时代的到来,出版的概念日渐扩大,很多网络百科全书都已经出现、普及,传统纸质百科全书面·l盏网络百科全书的挑战。两种类型的百科全书在选词立目、释文要求、交叉平衡、附件等辞书编纂的重要方面有各自的优势和劣势,都存在很大的完善空间。%With the arrival of the digital age, the concept of publishing has broadened, and online encyclopedia has appeared. Faced with its challenges, the traditional encyclopedia meets the risk of being replaced. In view of the important factors of dictionary compilation ranging from words selection, interpretation requirements, balancing by transposition to attachments and so on, both types of encyclopedia have their advantages and disadvantages, along with improving methods and promising prospects.

  19. Interactive Encyclopedia of North American Weeds, DVD v.4.0

    Science.gov (United States)

    An interactive DVD-ROM encyclopedia of North American weeds was developed that includes home pages for 685 weed species descriptions, over 3700 color photos, illustrated collar regions for grasses, distribution maps, habitat information, crops affected, ecological information, and hot-linked illustr...

  20. Philosophy of Education: An Encyclopedia. Garland Reference Library of the Humanities. Vol. 1671.

    Science.gov (United States)

    Chambliss, J. J., Ed.

    This reference book charts the influence of philosophical ideas that have had the greatest influence on education from ancient Greece to the present. The book covers such classical thinkers as Plato, Augustine, Hypatia, Locke, and Rousseau, as well as such recent figures as Montessori, Heidegger, Du Bois, and Dewey. The encyclopedia consists of…

  1. Encyclopedia of Public International Law, 7 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1985-01-01

    Tutvustus.: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (7. History of International Law. Foundations and Principles of International Law. Sources of International Law. Law of Treaties). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1984

  2. Encyclopedia of Public International Law, 6 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1984-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (6. regional Cooperation, Organization Problems). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1983

  3. Encyclopedia of Public International Law, 2 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1982-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (2. Decisions of International Courts and Tribunals and International Arbitrations). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1981

  4. Encyclopedia of Public International Law, 5 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1983-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. 5. International Organizations in General. Universal International Organisazations and Cooperation. Amsterdam, New York, Oxford: North-Holland Publishing Company, 1983

  5. Encyclopedia of Public International Law, 3 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1983-01-01

    Tutvustus.: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. 3 (A_M) and 4 (N-Z): Use of Force. War and Neutrality. Peace treaties. Amsterdam, New York, Oxford: North-Holland Publishing Company, 1982

  6. Encyclopedia of Public International Law, 8 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1986-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (8. Human Rights and the Individual in International Law. International Economic Relations). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1985

  7. The library without walls: images, medical dictionaries, atlases, medical encyclopedias free on web.

    Science.gov (United States)

    Giglia, E

    2008-09-01

    The aim of this article was to present the ''reference room'' of the Internet, a real library without walls. The reader will find medical encyclopedias, dictionaries, atlases, e-books, images, and will also learn something useful about the use and reuse of images in a text and in a web site, according to the copyright law.

  8. The promise of functional genomics: completing the encyclopedia of a cell.

    Science.gov (United States)

    Hughes, Timothy R; Robinson, Mark D; Mitsakakis, Nicholas; Johnston, Mark

    2004-10-01

    Genome sequencing provides complete parts lists of organisms. This presents the obvious challenge of determining how each gene contributes to the life of the organism. This task seems increasingly feasible; however, progress to date suggests that increased interaction between systematic efforts and individual investigators will be critical to completing the encyclopedia of the yeast cell.

  9. Effective Educational Programs: Meta-Findings from the Best Evidence Encyclopedia

    Science.gov (United States)

    Slavin, Robert E.; Lake, Cynthia

    2009-01-01

    One of the major series of reviews in elementary and secondary education is the Best Evidence Encyclopedia, or the BEE. Up to now, findings for systematic reviews have largely been restricted to the reviews themselves, with few cases in which lessons learned across many reviews using similar methods can be synthesized. The completion of the Best…

  10. "Treaties with American Indians: An Encyclopedia of Rights, Conflicts, and Sovereignty"

    Science.gov (United States)

    Krueger, Karla

    2009-01-01

    This article provides an overview of the three-volume reference set, "Treaties with American Indians: An Encyclopedia of Rights, Conflicts, and Sovereignty" published by ABC-CLIO. This reference work is edited by Donald Fixico, Arizona State University, and dedicated to the people of his tribes: (1) Shawnee; (2) Sac and Fox; (3) Seminole; and (4)…

  11. Encyclopedia of Public International Law, 6 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1984-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (6. regional Cooperation, Organization Problems). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1983

  12. Encyclopedia of Public International Law, 3 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1983-01-01

    Tutvustus.: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. 3 (A_M) and 4 (N-Z): Use of Force. War and Neutrality. Peace treaties. Amsterdam, New York, Oxford: North-Holland Publishing Company, 1982

  13. Encyclopedia of Public International Law, 2 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1982-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (2. Decisions of International Courts and Tribunals and International Arbitrations). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1981

  14. Encyclopedia of Public International Law, 8 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1986-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (8. Human Rights and the Individual in International Law. International Economic Relations). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1985

  15. Encyclopedia of Public International Law, 5 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1983-01-01

    Tutvustus: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. 5. International Organizations in General. Universal International Organisazations and Cooperation. Amsterdam, New York, Oxford: North-Holland Publishing Company, 1983

  16. Encyclopedia of Public International Law, 7 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1985-01-01

    Tutvustus.: Encyclopedia of Public International Law, published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (7. History of International Law. Foundations and Principles of International Law. Sources of International Law. Law of Treaties). Amsterdam, New York, Oxford: North-Holland Publishing Company, 1984

  17. Girlhood in America: An Encyclopedia. Volumes 1 and 2. The American Family.

    Science.gov (United States)

    Forman-Brunell, Miriam, Ed.

    Girls, who used to be second-class citizens, are now coming into their own. Still, girls' lives, their experiences, and their roles in the social, cultural, economic, and political history of the United States have been widely overlooked. This reference encyclopedia presents more than 100 signed articles by 98 high-profile interdisciplinary…

  18. Native America in the Twentieth Century: An Encyclopedia. Garland Reference Library of Social Science, Vol. 452.

    Science.gov (United States)

    Davis, Mary B., Ed.; And Others

    This encyclopedia contains articles reviewing important aspects of Native American life in the United States during the 20th century. Articles are arranged alphabetically by subject and were written by Native Americans, historians, anthropologists, and other specialists. Overview articles cover subjects such as art, economic conditions,…

  19. Reference Encyclopedia of the American Indian. Volume 1, 4th Edition.

    Science.gov (United States)

    Klein, Barry T., Ed.

    Volume 1 of the fourth edition of the encyclopedia contains directory and descriptive listings of organizations in the United States and Canada, resource materials concerning North American Indians, and a bibliography of in-print books about the American Indian. The first section of the volume contains source listings of government agencies,…

  20. Rules-Based Character Attributes Extraction from Baidu Encyclopedia%基于规则的百科人物属性抽取

    Institute of Scientific and Technical Information of China (English)

    李红亮; 杨燕; 尹红风; 贾真

    2013-01-01

      信息抽取是数据挖掘的一个重要领域,文本信息抽取是指从一段自由文本中抽取出指定的信息并将其结构化数据存入知识库供用户查询或下一步处理所用。人物属性信息抽取是智能人物类搜索引擎构建的重要基础,同时结构化信息也是计算机所能理解的一种数据格式。作者提出了一种自动获取百科人物属性的方法,该方法利用各属性值的词性信息来定位到百科自由文本中,通过统计的方法发现规则,再根据规则匹配从百科文本中获取人物属性信息。实验表明该方法从百科文本中抽取人物属性信息是有效的。抽取的结果可以用来构建人物属性知识库。%  Information extraction is an important area of data mining. Text information extraction means extracting specified information from a section of free text and storing structured data in the knowledge base for user querying or further processing. Character attribute information extraction is an important instrument of building search engine of persons, and is also a technology for computer program understanding. This paper presents an automatic method to obtain encyclopedia character attributes, and this method uses the speech tagging of each attribute value to locate the encyclopedia free text. The rules are discovered by statistical method, and the character attributes information is obtained from encyclopedia text according to rules matching. Experiments show that this method is effective in extracting character attribute information from encyclopedia text. The extracted results can be used to build the knowledge base of the character attributes.

  1. Rules-Based Character Attributes Extraction from Baidu Encyclopedia%基于规则的百科人物属性抽取

    Institute of Scientific and Technical Information of China (English)

    李红亮; 杨燕; 尹红风; 贾真

    2013-01-01

      信息抽取是数据挖掘的一个重要领域,文本信息抽取是指从一段自由文本中抽取出指定的信息并将其结构化数据存入知识库供用户查询或下一步处理所用。人物属性信息抽取是智能人物类搜索引擎构建的重要基础,同时结构化信息也是计算机所能理解的一种数据格式。作者提出了一种自动获取百科人物属性的方法,该方法利用各属性值的词性信息来定位到百科自由文本中,通过统计的方法发现规则,再根据规则匹配从百科文本中获取人物属性信息。实验表明该方法从百科文本中抽取人物属性信息是有效的。抽取的结果可以用来构建人物属性知识库。%Information extraction is an important area of data mining. Text information extraction means extracting specified information from a section of free text and storing structured data in the knowledge base for user querying or further processing. Character attribute information extraction is an important instrument of building search engine of persons, and is also a technology for computer program understanding. This paper presents an automatic method to obtain encyclopedia character attributes, and this method uses the speech tagging of each attribute value to locate the encyclopedia free text. The rules are discovered by statistical method, and the character attributes information is obtained from encyclopedia text according to rules matching. Experiments show that this method is effective in extracting character attribute information from encyclopedia text. The extracted results can be used to build the knowledge base of the character attributes.

  2. Preferential attachment in the growth of social networks: the internet encyclopedia Wikipedia.

    Science.gov (United States)

    Capocci, A; Servedio, V D P; Colaiori, F; Buriol, L S; Donato, D; Leonardi, S; Caldarelli, G

    2006-09-01

    We present an analysis of the statistical properties and growth of the free on-line encyclopedia Wikipedia. By describing topics by vertices and hyperlinks between them as edges, we can represent this encyclopedia as a directed graph. The topological properties of this graph are in close analogy with those of the World Wide Web, despite the very different growth mechanism. In particular, we measure a scale-invariant distribution of the in and out degree and we are able to reproduce these features by means of a simple statistical model. As a major consequence, Wikipedia growth can be described by local rules such as the preferential attachment mechanism, though users, who are responsible of its evolution, can act globally on the network.

  3. Encyclopedia of Public International Law, 9 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1988-01-01

    Tutvustus: Encyclopedia of Public International Law / published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (9. International Relations and Legal Cooperation in General. Diplomacy and Consular Relations and 10. States. Responsibility of Sates. International Law and Municipal Law). Amsterdam, New York, Oxford : North-Holland Publishing Company, 1986-1987. Pp. XV, 425 and pp. XV, 543

  4. Utilizing the World Wide Web as an Encyclopedia: Extracting Term Descriptions from Semi-Structured Texts

    OpenAIRE

    Fujii, Atsushi; Ishikawa, Tetsuya

    2000-01-01

    In this paper, we propose a method to extract descriptions of technical terms from Web pages in order to utilize the World Wide Web as an encyclopedia. We use linguistic patterns and HTML text structures to extract text fragments containing term descriptions. We also use a language model to discard extraneous descriptions, and a clustering method to summarize resultant descriptions. We show the effectiveness of our method by way of experiments.

  5. Building Large Collections of Chinese and English Medical Terms from Semi-Structured and Encyclopedia Websites

    OpenAIRE

    Yan Xu; Yining Wang; Jian-Tao Sun; Jianwen Zhang; Junichi Tsujii; Eric Chang

    2013-01-01

    To build large collections of medical terms from semi-structured information sources (e.g. tables, lists, etc.) and encyclopedia sites on the web. The terms are classified into the three semantic categories, Medical Problems, Medications, and Medical Tests, which were used in i2b2 challenge tasks. We developed two systems, one for Chinese and another for English terms. The two systems share the same methodology and use the same software with minimum language dependent parts. We produced large...

  6. Safety: Special Effects of Thermal Runaway Chapter Heading for Encyclopedia of Electrochemical Power Sources (PREPRINT)

    Science.gov (United States)

    2007-11-09

    Safety: Special Effects of Thermal Runaway Chapter Heading for Encyclopedia of Electrochemical Power Sources Henry A. Catherino U.S. Army... Power Sources (PREPRINT) 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) Henry A. Catherino 5d. PROJECT NUMBER 5e...Electrochemical Power Sources ", The original document contains color images. 14. ABSTRACT Any system that stores energy has the potential of becoming a

  7. "U-X-L Encyclopedia of U. S. History" Hones Students' Subject Search and Indexing Skills

    Science.gov (United States)

    Krueger, Karla

    2010-01-01

    This article features the "U-X-L Encyclopedia of U.S. History" by Sonia Benson, Daniel E. Brannen, Jr., and Rebecca Valentine is a new eight-volume set available in print or ebook (2009). The set has 1,745 pages and 677 entries ranging from just under one page to around eight pages in length. The ebook option may be accessed through Gale…

  8. Medieval Sources and Present-Day Folklore Materials on Saints in an Electronic Encyclopedia

    OpenAIRE

    Rangochev, Konstantin; Dimitrova, Margaret; Paneva-Marinova, Desislava

    2012-01-01

    This paper discusses the variety of the digitized content of an electronic encyclopedia on the veneration of saints according to Bulgarian sources. The emphasis is on medieval Slavonic Church manuscripts and on present-day records of Bulgarian folklore narratives and songs. The combination of these sources provokes discussion of the so-called folklore Christianity and adds new dimensions to the understanding of the role of the cults of saints for culture and of the religiosity ...

  9. "U-X-L Encyclopedia of U. S. History" Hones Students' Subject Search and Indexing Skills

    Science.gov (United States)

    Krueger, Karla

    2010-01-01

    This article features the "U-X-L Encyclopedia of U.S. History" by Sonia Benson, Daniel E. Brannen, Jr., and Rebecca Valentine is a new eight-volume set available in print or ebook (2009). The set has 1,745 pages and 677 entries ranging from just under one page to around eight pages in length. The ebook option may be accessed through Gale Virtual…

  10. [Vladimir Zederbaum" (1883-1942): Physician, journalist, contributor to the Russian "Jewish, Encyclopedia". A research report].

    Science.gov (United States)

    Antipova, Anastasia

    2015-01-01

    Vol. 15 o f the "Jewish Encyclopedia" (St. Petersburg 1908-1913) contains an article on Freud, signed by Vladimir Zederbaum. The data for the article were provided by Max Eitingon. This paper addresses the question of whether Zederbaum himself was Eitingon's contact. Several archives produced a lot of information about Zederbaum's medical and journalistic activities in St. Petersburg. However, to date no connection between the two men could be established.

  11. Encyclopedia of Public International Law, 9 / Henn-Jüri Uibopuu

    Index Scriptorium Estoniae

    Uibopuu, Henn-Jüri, 1929-2012

    1988-01-01

    Tutvustus: Encyclopedia of Public International Law / published under the Auspices of the Max-Planck-Institute for Comparative Public Law and International Law under the Direction of Rudolf Bernhardt. (9. International Relations and Legal Cooperation in General. Diplomacy and Consular Relations and 10. States. Responsibility of Sates. International Law and Municipal Law). Amsterdam, New York, Oxford : North-Holland Publishing Company, 1986-1987. Pp. XV, 425 and pp. XV, 543

  12. Quantitative and Qualitative Evaluation of The Structural Designing of Medical Informatics Dynamic Encyclopedia

    Science.gov (United States)

    Safdari, Reza; Shahmoradi, Leila; Hosseini-beheshti, Molouk-sadat; Nejad, Ahmadreza Farzaneh; Hosseiniravandi, Mohammad

    2015-01-01

    Introduction: Encyclopedias and their compilation have become so prevalent as a valid cultural medium in the world. The daily development of computer industry and the expansion of various sciences have made indispensable the compilation of electronic, specialized encyclopedias, especially the web-based ones. Materials and Methods: This is an applied-developmental study conducted in 2014. First, the main terms in the field of medical informatics were gathered using MeSH Online 2014 and the supplementary terms of each were determined, and then the tree diagram of the terms was drawn based on their relationship in MeSH. Based on the studies done by the researchers, the tree diagram of the encyclopedia was drawn with respect to the existing areas in this field, and the terms gathered were put in related domains. Findings: In MeSH, 75 preferred terms together with 249 supplementary ones were indexed. One of the informatics’ sub-branches is biomedical informatics and health which itself consists of three sub-divisions of bioinformatics, clinical informatics, and health informatics. Medical informatics which is a subdivision of clinical informatics has developed from the three fields of medical sciences, management and social sciences, and computational sciences and mathematics. Results and Discussion: Medical Informatics is created of confluence and fusion and applications of the three major scientific branches include health and biological sciences, social sciences and management sciences, computing and mathematical sciences, and according to that the structure of MeSH is weak for future development of Encyclopedia of Medical Informatics. PMID:26635440

  13. Fate of Trace Metals in Anaerobic Digestion.

    Science.gov (United States)

    Fermoso, F G; van Hullebusch, E D; Guibaud, G; Collins, G; Svensson, B H; Carliell-Marquet, C; Vink, J P M; Esposito, G; Frunzo, L

    2015-01-01

    A challenging, and largely uncharted, area of research in the field of anaerobic digestion science and technology is in understanding the roles of trace metals in enabling biogas production. This is a major knowledge gap and a multifaceted problem involving metal chemistry; physical interactions of metal and solids; microbiology; and technology optimization. Moreover, the fate of trace metals, and the chemical speciation and transport of trace metals in environments--often agricultural lands receiving discharge waters from anaerobic digestion processes--simultaneously represents challenges for environmental protection and opportunities to close process loops in anaerobic digestion.

  14. Using web-based technology to deliver scientific knowledge: the Southern Forest Encyclopedia Network.

    Science.gov (United States)

    John M. Pye; H. Michael Rauscher; Deborah K. Kennard; Patricia A. Flebbe; J. Bryan Jordin; William G. Hubbard; Cynthia Fowler; James. Ward

    2007-01-01

    Forest science, like any science, is a continuous process of discovering new knowledge, reevaluating existing knowledge, and revising our theories and management practices in light of these changes. The forest science community has not yet found the solution to the problem of getting continuously changing science efficiently and effectively into the hands of those who...

  15. Nuclear energy selected entries from the encyclopedia of sustainability science and technology

    CERN Document Server

    Tsoulfanidis, Nicholas

    2012-01-01

    Nuclear Energy provides an authoritative reference on all aspects of the nuclear industry from fundamental reactor physics calculations to reactor design, nuclear fuel resources, nuclear fuel cycle, radiation detection and protection, and nuclear power economics.  Featuring 19 peer-reviewed entries by recognized authorities in the field, this book provides comprehensive, streamlined coverage of fundamentals, current areas of research, and goals for the future.  The chapters will appeal to undergraduate and graduate students, researchers, and energy industry experts.

  16. Intellectual interchanges in the history of the massive online open-editing encyclopedia, Wikipedia

    Science.gov (United States)

    Yun, Jinhyuk; Lee, Sang Hoon; Jeong, Hawoong

    2016-01-01

    Wikipedia is a free Internet encyclopedia with an enormous amount of content. This encyclopedia is written by volunteers with various backgrounds in a collective fashion; anyone can access and edit most of the articles. This open-editing nature may give us prejudice that Wikipedia is an unstable and unreliable source; yet many studies suggest that Wikipedia is even more accurate and self-consistent than traditional encyclopedias. Scholars have attempted to understand such extraordinary credibility, but usually used the number of edits as the unit of time, without consideration of real time. In this work, we probe the formation of such collective intelligence through a systematic analysis using the entire history of 34 534 110 English Wikipedia articles, between 2001 and 2014. From this massive data set, we observe the universality of both timewise and lengthwise editing scales, which suggests that it is essential to consider the real-time dynamics. By considering real time, we find the existence of distinct growth patterns that are unobserved by utilizing the number of edits as the unit of time. To account for these results, we present a mechanistic model that adopts the article editing dynamics based on both editor-editor and editor-article interactions. The model successfully generates the key properties of real Wikipedia articles such as distinct types of articles for the editing patterns characterized by the interrelationship between the numbers of edits and editors, and the article size. In addition, the model indicates that infrequently referred articles tend to grow faster than frequently referred ones, and articles attracting a high motivation to edit counterintuitively reduce the number of participants. We suggest that this decay of participants eventually brings inequality among the editors, which will become more severe with time.

  17. Chisinau (Encyclopedia)

    Science.gov (United States)

    Colesnic, Yurie

    A general overview of the History, Architecture, Culture and Actual state of the City of Chisinau has been given. Particularly, some part of the book illustrate former and actual Scientific Institutions,Universities and Colleges in the City. Another part gives short but comprehensive biographies of Scientists and Teaching Staff of Universities, borne, living or working in Chisinau during its 560-years History.

  18. Osterbrock Prize Lecture: The Coming to Be of the Biographical Encyclopedia of Astronomers

    Science.gov (United States)

    Hockey, Thomas A.

    2017-01-01

    The four-volume Biographical Encyclopedia of Astronomers (and cosmologists), second edition, is one of a kind: There is no discipline-specific counterpart in the physical or biological sciences. The BEA is the work of 430 authors, translators, and editors who produced biographies of approximately 1,800 persons, from the beginning of history to the beginning of the era of Big Science. How did this happen? The Editor-in-chief will give a “behind the pages” view of the construction of this first-look, first-reached-from-the-shelf reference work.

  19. Usage patterns of blue flower color representation by Encyclopedia of Life content providers

    Directory of Open Access Journals (Sweden)

    Chantal-Marie Wright

    2014-08-01

    Full Text Available Encyclopedia of Life (EOL is a resource for community-driven biodiversity data, focusing on species information and images. Research into blue flowers to compare color ('blueness' at different elevations revealed that data content providers describe flowers as blue for any color hue in the range from blue to magenta. We propose methods for standardizing color values and color searching within EOL by means of an expanded color vocabulary and improved access to image metadata, in order to improve the research capacity of this valuable resource.

  20. Usage patterns of blue flower color representation by Encyclopedia of Life content providers.

    Science.gov (United States)

    Wright, Chantal-Marie; Seltmann, Katja C

    2014-01-01

    Encyclopedia of Life (EOL) is a resource for community-driven biodiversity data, focusing on species information and images. Research into blue flowers to compare color ('blueness') at different elevations revealed that data content providers describe flowers as blue for any color hue in the range from blue to magenta. We propose methods for standardizing color values and color searching within EOL by means of an expanded color vocabulary and improved access to image metadata, in order to improve the research capacity of this valuable resource.

  1. Taxonomy and clustering in collaborative systems: the case of the on-line encyclopedia Wikipedia

    OpenAIRE

    Capocci, A.; Rao, F.; Caldarelli, G.

    2007-01-01

    In this paper we investigate the nature and structure of the relation between imposed classifications and real clustering in a particular case of a scale-free network given by the on-line encyclopedia Wikipedia. We find a statistical similarity in the distributions of community sizes both by using the top-down approach of the categories division present in the archive and in the bottom-up procedure of community detection given by an algorithm based on the spectral properties of the graph. Reg...

  2. Encyclopedia of cosmology historical, philosophical, and scientific foundations of modern cosmology

    CERN Document Server

    Hetherington, Norriss S

    2014-01-01

    The Encyclopedia of Cosmology, first published in 1993, recounts the history, philosophical assumptions, methodological ambiguities, and human struggles that have influenced the various responses to the basic questions of cosmology through the ages, as well as referencing important scientific theories.Just as the recognition of social conventions in other cultures can lead to a more productive perspective on our own behaviour, so too a study of the cosmologies of other times and places can enable us recognise elements of our own cosmology that might otherwise pass as inevitable developments.Ap

  3. Fate in intermittent claudication

    DEFF Research Database (Denmark)

    Jelnes, Rolf; Gaardsting, O; Hougaard Jensen, K

    1986-01-01

    The fate of 257 consecutive patients (100 women) aged 36-85 years (mean 65) first seen with intermittent claudication in 1977 was analysed after a mean of 6.5 (SD 0.5) years. When first seen none of the patients complained of rest pain or had ulcers or gangrenous lesions on the feet. At follow up....... The rate of clinical progression of the arteriosclerotic disease (that is, rest pain or gangrene) of the worst affected leg was 7.5% in the first year after referral. Thereafter the rate was 2.2% a year. An ankle systolic blood pressure below 70 mm Hg, a toe systolic blood pressure below 40 mm Hg......, or an ankle/arm pressure index below 50% were individually significantly associated with progression of the arteriosclerotic disease. These findings show the importance of peripheral blood pressure measurements in the management of patients with intermittent claudication due to arteriosclerotic disease....

  4. Using a digital marketing platform for the promotion of an internet based health encyclopedia in saudi arabia.

    Science.gov (United States)

    Al Ateeq, Asma; Al Moamary, Eman; Daghestani, Tahani; Al Muallem, Yahya; Al Dogether, Majed; Alsughayr, Abdulrahman; Altuwaijri, Majid; Househ, Mowafa

    2015-01-01

    The objective of this paper is to investigate the experiences of using a digital marketing platform to promote the use of an internet based health encyclopedia in Saudi Arabia. Key informant interviews, meeting documentation, and Google Analytics were the data collection sources used in the study. Findings show that using a digital marketing platform led to a significant increase in the number of visitors to the health encyclopedia. The results demonstrate that digital marketing platforms are effective tools to be used for promoting internet based health education interventions. Future work will examine long-term educational impacts and costs in using digital marketing platforms to promote online healthcare sites in Saudi Arabia.

  5. THE REACH AND RICHNESS OF WIKINOMICS: IS THE FREE WEB-BASED ENCYCLOPEDIA WIKIPEDIA ONLY FOR RICH COUNTRIES?

    DEFF Research Database (Denmark)

    Rask, Morten

    2007-01-01

    In this article, a model of the patterns of correlation in Wikipedia, reach and richness, lays the foundation for studying whether the free Web-based encyclopedia Wikipedia is only for developed countries. Based on data from 12 different Wikipedia language editions, the author finds that the cent......In this article, a model of the patterns of correlation in Wikipedia, reach and richness, lays the foundation for studying whether the free Web-based encyclopedia Wikipedia is only for developed countries. Based on data from 12 different Wikipedia language editions, the author finds...

  6. Knowledge extraction and semantic annotation of text from the encyclopedia of life.

    Directory of Open Access Journals (Sweden)

    Anne E Thessen

    Full Text Available Numerous digitization and ontological initiatives have focused on translating biological knowledge from narrative text to machine-readable formats. In this paper, we describe two workflows for knowledge extraction and semantic annotation of text data objects featured in an online biodiversity aggregator, the Encyclopedia of Life. One workflow tags text with DBpedia URIs based on keywords. Another workflow finds taxon names in text using GNRD for the purpose of building a species association network. Both workflows work well: the annotation workflow has an F1 Score of 0.941 and the association algorithm has an F1 Score of 0.885. Existing text annotators such as Terminizer and DBpedia Spotlight performed well, but require some optimization to be useful in the ecology and evolution domain. Important future work includes scaling up and improving accuracy through the use of distributional semantics.

  7. Proteopedia: Exciting Advances in the 3D Encyclopedia of Biomolecular Structure

    Science.gov (United States)

    Prilusky, Jaime; Hodis, Eran; Sussman, Joel L.

    Proteopedia is a collaborative, 3D web-encyclopedia of protein, nucleic acid and other structures. Proteopedia ( http://www.proteopedia.org ) presents 3D biomolecule structures in a broadly accessible manner to a diverse scientific audience through easy-to-use molecular visualization tools integrated into a wiki environment that anyone with a user account can edit. We describe recent advances in the web resource in the areas of content and software. In terms of content, we describe a large growth in user-added content as well as improvements in automatically-generated content for all PDB entry pages in the resource. In terms of software, we describe new features ranging from the capability to create pages hidden from public view to the capability to export pages for offline viewing. New software features also include an improved file-handling system and availability of biological assemblies of protein structures alongside their asymmetric units.

  8. DANIO-CODE: Toward an Encyclopedia of DNA Elements in Zebrafish.

    Science.gov (United States)

    Tan, Haihan; Onichtchouk, Daria; Winata, Cecilia

    2016-02-01

    The zebrafish has emerged as a model organism for genomics studies. The symposium "Toward an encyclopedia of DNA elements in zebrafish" held in London in December 2014, was coorganized by Ferenc Müller and Fiona Wardle. This meeting is a follow-up of a similar previous workshop held 2 years earlier and represents a push toward the formalization of a community effort to annotate functional elements in the zebrafish genome. The meeting brought together zebrafish researchers, bioinformaticians, as well as members of established consortia, to exchange scientific findings and experience, as well as to discuss the initial steps toward the formation of a DANIO-CODE consortium. In this study, we provide the latest updates on the current progress of the consortium's efforts, opening up a broad invitation to researchers to join in and contribute to DANIO-CODE.

  9. IDENTIFICATION OF QUESTIONABLE EXCLUSION CRITERIA IN MENTAL DISORDER CLINICAL TRIALS USING A MEDICAL ENCYCLOPEDIA.

    Science.gov (United States)

    Ma, Handong; Weng, Chunhua

    2016-01-01

    Precision medicine requires precise evidence-based practice and precise definition of the patients included in clinical studies for evidence generalization. Clinical research exclusion criteria define confounder patient characteristics for exclusion from a study. However, unnecessary exclusion criteria can weaken patient representativeness of study designs and generalizability of study results. This paper presents a method for identifying questionable exclusion criteria for 38 mental disorders. We extracted common eligibility features (CEFs) from all trials on these disorders from ClinicalTrials.gov. Network Analysis showed scale-free property of the CEF network, indicating uneven usage frequencies among CEFs. By comparing these CEFs' term frequencies in clinical trials' exclusion criteria and in the PubMed Medical Encyclopedia for matching conditions, we identified unjustified potential overuse of exclusion CEFs in mental disorder trials. Then we discussed the limitations in current exclusion criteria designs and made recommendations for achieving more patient-centered exclusion criteria definitions.

  10. EcoCyc: an encyclopedia of Escherichia coli genes and metabolism.

    Science.gov (United States)

    Karp, P D; Riley, M; Paley, S M; Pelligrini-Toole, A

    1996-01-01

    The encyclopedia of Escherichia coli genes and metabolism (EcoCyc) is a database that combines information about the genome and the intermediary metabolism of E.coli. It describes 2034 genes, 306 enzymes encoded by these genes, 580 metabolic reactions that occur in E.coli and the organization of these reactions into 100 metabolic pathways. The EcoCyc graphical user interface allows query and exploration of the EcoCyc database using visualization tools such as genomic map browsers and automatic layouts of metabolic pathways. EcoCyc spans the space from sequence to function to allow investigation of an unusually broad range of questions. EcoCyc can be thought of as both an electronic review article, because of its copious references to the primary literature, and as an in silico model of E.coli that can be probed and analyzed through computational means.

  11. A brief review on the Human Encyclopedia of DNA Elements (ENCODE) project.

    Science.gov (United States)

    Qu, Hongzhu; Fang, Xiangdong

    2013-06-01

    The ENCyclopedia Of DNA Elements (ENCODE) project is an international research consortium that aims to identify all functional elements in the human genome sequence. The second phase of the project comprised 1640 datasets from 147 different cell types, yielding a set of 30 publications across several journals. These data revealed that 80.4% of the human genome displays some functionality in at least one cell type. Many of these regulatory elements are physically associated with one another and further form a network or three-dimensional conformation to affect gene expression. These elements are also related to sequence variants associated with diseases or traits. All these findings provide us new insights into the organization and regulation of genes and genome, and serve as an expansive resource for understanding human health and disease.

  12. Translating the ENCyclopedia Of DNA Elements Project findings to the clinic: ENCODE's implications for eye disease.

    Science.gov (United States)

    Sanfilippo, Paul G; Hewitt, Alex W

    2014-01-01

    Approximately 10 years after the Human Genome Project unravelled the sequence of our DNA, the ENCyclopedia Of DNA Elements (ENCODE) Project sought to interpret it. Data from the recently completed project have shed new light on the proportion of biologically active human DNA, assigning a biochemical role to much of the sequence previously considered to be 'junk'. Many of these newly catalogued functional elements represent epigenetic mechanisms involved in regulation of gene expression. Analogous to an Ishihara plate, a gene-coding region of DNA (target dots) only comes into context when the non-coding DNA (surrounding dots) is appreciated. In this review we provide an overview of the ENCODE project, discussing the significance of these data for ophthalmic research and eye disease. The novel insights afforded by the ENCODE project will in time allow for the development of new therapeutic strategies in the management of common blinding disorders.

  13. Knowledge extraction and semantic annotation of text from the encyclopedia of life.

    Science.gov (United States)

    Thessen, Anne E; Parr, Cynthia Sims

    2014-01-01

    Numerous digitization and ontological initiatives have focused on translating biological knowledge from narrative text to machine-readable formats. In this paper, we describe two workflows for knowledge extraction and semantic annotation of text data objects featured in an online biodiversity aggregator, the Encyclopedia of Life. One workflow tags text with DBpedia URIs based on keywords. Another workflow finds taxon names in text using GNRD for the purpose of building a species association network. Both workflows work well: the annotation workflow has an F1 Score of 0.941 and the association algorithm has an F1 Score of 0.885. Existing text annotators such as Terminizer and DBpedia Spotlight performed well, but require some optimization to be useful in the ecology and evolution domain. Important future work includes scaling up and improving accuracy through the use of distributional semantics.

  14. The richness and reach of Wikinomics: Is the free web-based encyclopedia Wikipedia only for the rich countries?

    DEFF Research Database (Denmark)

    Rask, Morten

    2007-01-01

    In this paper, a model of the patterns of correlation in Wikipedia, reach and richness, lays the foundation for studying whether or not the free web-based encyclopedia Wikipedia is only for developed countries. Based upon data from 12 different Wikipedia language editions, we find that the centra...

  15. The richness and reach of Wikinomics: Is the free web-based encyclopedia Wikipedia only for the rich countries?

    DEFF Research Database (Denmark)

    Rask, Morten

    2007-01-01

    In this paper, a model of the patterns of correlation in Wikipedia, reach and richness, lays the foundation for studying whether or not the free web-based encyclopedia Wikipedia is only for developed countries. Based upon data from 12 different Wikipedia language editions, we find that the central...

  16. The Mysterious Case of the Detective as Child Hero: Sherlock Holmes, Encyclopedia Brown and Nancy Drew as Role Models?

    Science.gov (United States)

    Sugarman, Sally

    In the mystery genre, the one characteristic that the enduring figures of Sherlock Holmes, Nancy Drew, and Encyclopedia Brown have in common is a rational mind. The source of their strength is their ability to think and think well. A study examined some typical examples of the mystery genre in young adult literature and surveyed children and…

  17. Building large collections of Chinese and English medical terms from semi-structured and encyclopedia websites.

    Science.gov (United States)

    Xu, Yan; Wang, Yining; Sun, Jian-Tao; Zhang, Jianwen; Tsujii, Junichi; Chang, Eric

    2013-01-01

    To build large collections of medical terms from semi-structured information sources (e.g. tables, lists, etc.) and encyclopedia sites on the web. The terms are classified into the three semantic categories, Medical Problems, Medications, and Medical Tests, which were used in i2b2 challenge tasks. We developed two systems, one for Chinese and another for English terms. The two systems share the same methodology and use the same software with minimum language dependent parts. We produced large collections of terms by exploiting billions of semi-structured information sources and encyclopedia sites on the Web. The standard performance metric of recall (R) is extended to three different types of Recall to take the surface variability of terms into consideration. They are Surface Recall (R(S)), Object Recall (R(O)), and Surface Head recall (R(H)). We use two test sets for Chinese. For English, we use a collection of terms in the 2010 i2b2 text. Two collections of terms, one for English and the other for Chinese, have been created. The terms in these collections are classified as either of Medical Problems, Medications, or Medical Tests in the i2b2 challenge tasks. The English collection contains 49,249 (Problems), 89,591 (Medications) and 25,107 (Tests) terms, while the Chinese one contains 66,780 (Problems), 101,025 (Medications), and 15,032 (Tests) terms. The proposed method of constructing a large collection of medical terms is both efficient and effective, and, most of all, independent of language. The collections will be made publicly available.

  18. Building large collections of Chinese and English medical terms from semi-structured and encyclopedia websites.

    Directory of Open Access Journals (Sweden)

    Yan Xu

    Full Text Available To build large collections of medical terms from semi-structured information sources (e.g. tables, lists, etc. and encyclopedia sites on the web. The terms are classified into the three semantic categories, Medical Problems, Medications, and Medical Tests, which were used in i2b2 challenge tasks. We developed two systems, one for Chinese and another for English terms. The two systems share the same methodology and use the same software with minimum language dependent parts. We produced large collections of terms by exploiting billions of semi-structured information sources and encyclopedia sites on the Web. The standard performance metric of recall (R is extended to three different types of Recall to take the surface variability of terms into consideration. They are Surface Recall (R(S, Object Recall (R(O, and Surface Head recall (R(H. We use two test sets for Chinese. For English, we use a collection of terms in the 2010 i2b2 text. Two collections of terms, one for English and the other for Chinese, have been created. The terms in these collections are classified as either of Medical Problems, Medications, or Medical Tests in the i2b2 challenge tasks. The English collection contains 49,249 (Problems, 89,591 (Medications and 25,107 (Tests terms, while the Chinese one contains 66,780 (Problems, 101,025 (Medications, and 15,032 (Tests terms. The proposed method of constructing a large collection of medical terms is both efficient and effective, and, most of all, independent of language. The collections will be made publicly available.

  19. Searching for the term -Nursing- in Greek dictionaries and encyclopedias from the establishment of the Modern Greek state until 2002

    Directory of Open Access Journals (Sweden)

    Despina Sapountzi-Krepia

    2007-01-01

    Full Text Available The term "nursing" starts to be used in the Greek nursing field during the 40s and 50s, however, it continued to be almost unknown among the members of the Greek society. Thus, the search of the start of the inclusion of the term nursing in the Greek dictionaries and encyclopaedias is interesting for Greek nurses. Aim: The search of the term "nursing" in Greek dictionaries and encyclopedias. Material and method: An historical research was conducted for the period of 1833 until the year 2002. Sixty dictionaries and encyclopedias were found ans studied. Results: The first publications of this period are; the "Dictionary of Greek Language" (Vienna, 1836, the "Encyclopedia Lexicon" (Smyrna, 1864 and the "Encyclopedic Lexicon" (Eleftheroudakis, Athens 1890-1891. The term "nursing" it was not included in those publications. In the 20th century the publications of 54 dictionaries and encyclopedias dating 1900 to 1999 were found. In most of those publications the term "nursing" is not mentioned, and it strted aping only in the 90s in just 3 sources; the "Encyclopedia Papyros Larousse Britanicca" (Athens, 1991, the "Modern Lexicon of Greek Language" (Patakis Publications, 1991, reprint of "Greek Lexicon" Tegopoulos-Fytrakis (1999 and the "Lexicon of Modern Greek" by Babiniotis (1998. In the 21st century two dictionaries were found, in which the word "nursing" is not included, while it is mentioned in the "Big Lexicon of Modern Greek" (Bousnaki, 2002 and in the reprint of Babiniotis' Dictionary in 2002. Conclusions: The term "nursing" has started to be included in the dictionaries, however, more effort needs to be paid by the nursing authorities towards to the correct attribution of the term in publications.

  20. The Atmospheric Fate of Organic Nitrogen Compounds

    Science.gov (United States)

    Borduas, Nadine

    Organic nitrogen compounds are present in our atmosphere from biogenic and anthropogenic sources and have impacts on air quality and climate. Due to recent advances in instrumentation, these compounds are being detected in the gas and particle phases, raising questions as to their source, processing and sinks in the environment. With their recently identified role as contributors to aerosol formation and growth, their novel large scale use as solvents in carbon capture and storage (CCS) technology and their emissions from cigarette smoke, it is now important to address the gaps in our understanding of the fate of organic nitrogen. Experimentally and theoretically, I studied the chemical atmospheric fate of specific organic nitrogen compounds in the amine, amide and isocyanate families, yielding information that can be used in chemical transport models to assess the fate of this emerging class of atmospheric molecules. I performed kinetic laboratory studies in a smog chamber to measure the room temperature rate coefficient for reaction with the hydroxyl radical of monoethanolamine, nicotine, and five different amides. I employed online-mass spectrometry techniques to quantify the oxidation products. I found that amines react quickly with OH radicals with lifetimes of a few hours under sunlit conditions, producing amides as oxidation products. My studies on amides revealed that they have much longer lifetimes in the atmosphere, ranging from a few hours to a week. Photo-oxidation of amides produces isocyanates and I investigated these mechanisms in detail using ab initio calculations. Furthermore, I experimentally measured isocyanic acid's Henry's Law constant as well as its hydrolysis rate constants to better understand its sinks in the atmosphere. Finally, I re-examined the structure-activity relationship (SAR) of organic nitrogen molecules for improved model parameterizations.

  1. 略论英美两部著名社会科学百科全书的异同--Encyclopedia of the Social Science 与 The Social Science Encyclopedia

    Institute of Scientific and Technical Information of China (English)

    韩志敏

    2005-01-01

    美国出版发行的Encyclopedia of the Social Science和英国出版发行的The Social Science Encyclopedia,这两部著名的社会科学百科全书的中文译名都可以称为.这两部社会科学百科全书是世界上较有代表性的社会科学百科全书.它们编制目的不同、收录范围及行文特点也不同,但在反映内容方面却有着共同点.

  2. Review Essay: The New Complexity: Encyclopedias, Glossaries and Dictionaries on Qualitative Research

    Directory of Open Access Journals (Sweden)

    Günter Mey

    2008-05-01

    Full Text Available A new genre—glossaries and dictionaries on qualitative research—has started to enter the Anglo-American publishing market. Following Thomas A. SCHWANDT's Dictionary of Qualitative Inquiry, published for the first time in 1997 and now available in a 3rd edition, two new books have appeared: The SAGE Dictionary of Social Research Methods, edited by Victor JUPP, and Keywords in Qualitative Research, written by Michael BLOOR and Fiona WOOD. Similar volumes are in the pipeline, such as The SAGE Encyclopedia of Qualitative Research Methods, edited by Lisa M. GIVEN, which is to be published in spring 2008. In face of the diversification of qualitative research, such a development is not surprising: encyclopedias, glossaries and dictionaries promise a quick overview of an increasingly complex research area. Yet it is surprising that although more than 600 terms and concepts are defined and discussed in the books mentioned above, there is only a small group of about 30 terms common to all of them. Even for this common denominator descriptions are divergent and there is little overlap of the references provided for further reading in relation to each term. In this regard qualitative research seems to be something it is hard for encyclopedic endeavors to grasp. A further comparison of the English books with the only one currently available in German reveals the impact of language and national barriers: many terms familiar to at least some sections of the German qualitative research community do not exist at all in the English-language texts. The books discussed in this essay offer an overview but do not really do justice to the complexity and diversity of the research field. To purchase just one of them would bring only partial success to those hoping for a comprehensive overview of the field of qualitative research. And whether such fixed—print—reference guides will be attractive outside of libraries when the Internet, including Wikipedia and

  3. Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.

    Science.gov (United States)

    Prilusky, Jaime; Hodis, Eran; Canner, David; Decatur, Wayne A; Oberholser, Karl; Martz, Eric; Berchanski, Alexander; Harel, Michal; Sussman, Joel L

    2011-08-01

    Proteopedia is a collaborative, 3D web-encyclopedia of protein, nucleic acid and other biomolecule structures. Created as a means for communicating biomolecule structures to a diverse scientific audience, Proteopedia (http://www.proteopedia.org) presents structural annotation in an intuitive, interactive format and allows members of the scientific community to easily contribute their own annotations. Here, we provide a status report on Proteopedia by describing advances in the web resource since its inception three and a half years ago, focusing on features of potential direct use to the scientific community. We discuss its progress as a collaborative 3D-encyclopedia of structures as well as its use as a complement to scientific publications and PowerPoint presentations. We also describe Proteopedia's use for 3D visualization in structure-related pedagogy.

  4. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

    Science.gov (United States)

    Barretina, Jordi; Caponigro, Giordano; Stransky, Nicolas; Venkatesan, Kavitha; Margolin, Adam A; Kim, Sungjoon; Wilson, Christopher J; Lehár, Joseph; Kryukov, Gregory V; Sonkin, Dmitriy; Reddy, Anupama; Liu, Manway; Murray, Lauren; Berger, Michael F; Monahan, John E; Morais, Paula; Meltzer, Jodi; Korejwa, Adam; Jané-Valbuena, Judit; Mapa, Felipa A; Thibault, Joseph; Bric-Furlong, Eva; Raman, Pichai; Shipway, Aaron; Engels, Ingo H; Cheng, Jill; Yu, Guoying K; Yu, Jianjun; Aspesi, Peter; de Silva, Melanie; Jagtap, Kalpana; Jones, Michael D; Wang, Li; Hatton, Charles; Palescandolo, Emanuele; Gupta, Supriya; Mahan, Scott; Sougnez, Carrie; Onofrio, Robert C; Liefeld, Ted; MacConaill, Laura; Winckler, Wendy; Reich, Michael; Li, Nanxin; Mesirov, Jill P; Gabriel, Stacey B; Getz, Gad; Ardlie, Kristin; Chan, Vivien; Myer, Vic E; Weber, Barbara L; Porter, Jeff; Warmuth, Markus; Finan, Peter; Harris, Jennifer L; Meyerson, Matthew; Golub, Todd R; Morrissey, Michael P; Sellers, William R; Schlegel, Robert; Garraway, Levi A

    2012-03-28

    The systematic translation of cancer genomic data into knowledge of tumour biology and therapeutic possibilities remains challenging. Such efforts should be greatly aided by robust preclinical model systems that reflect the genomic diversity of human cancers and for which detailed genetic and pharmacological annotation is available. Here we describe the Cancer Cell Line Encyclopedia (CCLE): a compilation of gene expression, chromosomal copy number and massively parallel sequencing data from 947 human cancer cell lines. When coupled with pharmacological profiles for 24 anticancer drugs across 479 of the cell lines, this collection allowed identification of genetic, lineage, and gene-expression-based predictors of drug sensitivity. In addition to known predictors, we found that plasma cell lineage correlated with sensitivity to IGF1 receptor inhibitors; AHR expression was associated with MEK inhibitor efficacy in NRAS-mutant lines; and SLFN11 expression predicted sensitivity to topoisomerase inhibitors. Together, our results indicate that large, annotated cell-line collections may help to enable preclinical stratification schemata for anticancer agents. The generation of genetic predictions of drug response in the preclinical setting and their incorporation into cancer clinical trial design could speed the emergence of 'personalized' therapeutic regimens.

  5. Pocketome: an encyclopedia of small-molecule binding sites in 4D.

    Science.gov (United States)

    Kufareva, Irina; Ilatovskiy, Andrey V; Abagyan, Ruben

    2012-01-01

    The importance of binding site plasticity in protein-ligand interactions is well-recognized, and so are the difficulties in predicting the nature and the degree of this plasticity by computational means. To assist in understanding the flexible protein-ligand interactions, we constructed the Pocketome, an encyclopedia of about one thousand experimentally solved conformational ensembles of druggable binding sites in proteins, grouped by location and consistent chain/cofactor composition. The multiplicity of pockets within the ensembles adds an extra, fourth dimension to the Pocketome entry data. Within each ensemble, the pockets were carefully classified by the degree of their pairwise similarity and compatibility with different ligands. The core of the Pocketome is derived regularly and automatically from the current releases of the Protein Data Bank and the Uniprot Knowledgebase; this core is complemented by entries built from manually provided seed ligand locations. The Pocketome website (www.pocketome.org) allows searching for the sites of interest, analysis of conformational clusters, important residues, binding compatibility matrices and interactive visualization of the ensembles using the ActiveICM web browser plugin. The Pocketome collection can be used to build multi-conformational docking and 3D activity models as well as to design cross-docking and virtual ligand screening benchmarks.

  6. Fine-scale map of encyclopedia of DNA elements regions in the Korean population.

    Science.gov (United States)

    Yoo, Yeon-Kyeong; Ke, Xiayi; Hong, Sungwoo; Jang, Hye-Yoon; Park, Kyunghee; Kim, Sook; Ahn, TaeJin; Lee, Yeun-Du; Song, Okryeol; Rho, Na-Young; Lee, Moon Sue; Lee, Yeon-Su; Kim, Jaeheup; Kim, Young J; Yang, Jun-Mo; Song, Kyuyoung; Kimm, Kyuchan; Weir, Bruce; Cardon, Lon R; Lee, Jong-Eun; Hwang, Jung-Joo

    2006-09-01

    The International HapMap Project aims to generate detailed human genome variation maps by densely genotyping single-nucleotide polymorphisms (SNPs) in CEPH, Chinese, Japanese, and Yoruba samples. This will undoubtedly become an important facility for genetic studies of diseases and complex traits in the four populations. To address how the genetic information contained in such variation maps is transferable to other populations, the Korean government, industries, and academics have launched the Korean HapMap project to genotype high-density Encyclopedia of DNA Elements (ENCODE) regions in 90 Korean individuals. Here we show that the LD pattern, block structure, haplotype diversity, and recombination rate are highly concordant between Korean and the two HapMap Asian samples, particularly Japanese. The availability of information from both Chinese and Japanese samples helps to predict more accurately the possible performance of HapMap markers in Korean disease-gene studies. Tagging SNPs selected from the two HapMap Asian maps, especially the Japanese map, were shown to be very effective for Korean samples. These results demonstrate that the HapMap variation maps are robust in related populations and will serve as an important resource for the studies of the Korean population in particular.

  7. Potential use of DNA barcodes in regulatory science: applications of the Regulatory Fish Encyclopedia.

    Science.gov (United States)

    Yancy, Haile F; Zemlak, Tyler S; Mason, Jacquline A; Washington, Jewell D; Tenge, Bradley J; Nguyen, Ngoc-Lan T; Barnett, James D; Savary, Warren E; Hill, Walter E; Moore, Michelle M; Fry, Frederick S; Randolph, Spring C; Rogers, Patricia L; Hebert, Paul D N

    2008-01-01

    The use of a DNA-based identification system (DNA barcoding) founded on the mitochondrial gene cytochrome c oxidase subunit I (COI) was investigated for updating the U.S. Food and Drug Administration Regulatory Fish Encyclopedia (RFE; http://www.cfsan.fda.gov/-frf/rfe0.html). The RFE is a compilation of data used to identify fish species. It was compiled to help regulators identify species substitution that could result in potential adverse health consequences or could be a source of economic fraud. For each of many aquatic species commonly sold in the United States, the RFE includes high-resolution photographs of whole fish and their marketed product forms and species-specific biochemical patterns for authenticated fish species. These patterns currently include data from isoelectric focusing studies. In this article, we describe the generation of DNA barcodes for 172 individual authenticated fish representing 72 species from 27 families contained in the RFE. These barcode sequences can be used as an additional identification resource. In a blind study, 60 unknown fish muscle samples were barcoded, and the results were compared with the RFE barcode reference library. All 60 samples were correctly identified to species based on the barcoding data. Our study indicates that DNA barcoding can be a powerful tool for species identification and has broad potential applications.

  8. The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth.

    Science.gov (United States)

    Parr, Cynthia S; Wilson, Nathan; Leary, Patrick; Schulz, Katja S; Lans, Kristen; Walley, Lisa; Hammock, Jennifer A; Goddard, Anthony; Rice, Jeremy; Studer, Marie; Holmes, Jeffrey T G; Corrigan, Robert J

    2014-01-01

    The Encyclopedia of Life (EOL, http://eol.org) aims to provide unprecedented global access to a broad range of information about life on Earth. It currently contains 3.5 million distinct pages for taxa and provides content for 1.3 million of those pages. The content is primarily contributed by EOL content partners (providers) that have a more limited geographic, taxonomic or topical scope. EOL aggregates these data and automatically integrates them based on associated scientific names and other classification information. EOL also provides interfaces for curation and direct content addition. All materials in EOL are either in the public domain or licensed under a Creative Commons license. In addition to the web interface, EOL is also accessible through an Application Programming Interface. In this paper, we review recent developments added for Version 2 of the web site and subsequent releases through Version 2.2, which have made EOL more engaging, personal, accessible and internationalizable. We outline the core features and technical architecture of the system. We summarize milestones achieved so far by EOL to present results of the current system implementation and establish benchmarks upon which to judge future improvements. We have shown that it is possible to successfully integrate large amounts of descriptive biodiversity data from diverse sources into a robust, standards-based, dynamic, and scalable infrastructure. Increasing global participation and the emergence of EOL-powered applications demonstrate that EOL is becoming a significant resource for anyone interested in biological diversity.

  9. Complex Networks in Different Languages: A Study of an Emergent Multilingual Encyclopedia

    Science.gov (United States)

    Pembe, F. Canan; Bingol, Haluk

    There is an increasing interest to the study of complex networks in an interdisciplinary way. Language, as a complex network, has been a part of this study due to its importance in human life. Moreover, the Internet has also been at the center of this study by making access to large amounts of information possible. With these ideas in mind, this work aims to evaluate conceptual networks in different languages with the data from a large and open source of information in the Internet, namely Wikipedia. As an evolving multilingual encyclopedia that can be edited by any Internet user, Wikipedia is a good example of an emergent complex system. In this paper, different from previous work on conceptual networks which usually concentrated on single languages, we concentrate on possible ways to compare the usages of different languages and possibly the underlying cultures. This also involves the analysis of local network properties around certain coneepts in different languages. For an initial evaluation, the concept "family" is used to compare the English and German Wikipedias. Although, the work is currently at the beginning, the results are promising.

  10. 类书分类体系的发展演变%The Development of Encyclopedia Classification System

    Institute of Scientific and Technical Information of China (English)

    夏南强

    2001-01-01

    Knowledge classification is the summary of people's re cognitionto the objective world and social practice, and the formation of encyclopedia classification system is based on human beings' knowledge classification . This paper summaries the knowledge classification before the encyclopedia classification system emerged and through analyzing some important representative en cyclopedia's classification characteristics, entry type, the thought and purpose of the classification and arrangement, it further marks the track of the development of encyclopedia classification system.%知识分类,是人类对客观世界和社会实践生活认识的归纳与总结。类书分类体系的形成,正是构建于人类知识分类基础之上的。本文概述了类书产生以前的知识分类,并对历史上一些重要的有代表性的类书的分类特点、类目类型、立类和排序的思想和目的,作了较深入的剖析,从而勾勒了类书分类体系发展演变的轨迹。

  11. Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia.

    Science.gov (United States)

    Carninci, Piero; Waki, Kazunori; Shiraki, Toshiyuki; Konno, Hideaki; Shibata, Kazuhiro; Itoh, Masayoshi; Aizawa, Katsunori; Arakawa, Takahiro; Ishii, Yoshiyuki; Sasaki, Daisuke; Bono, Hidemasa; Kondo, Shinji; Sugahara, Yuichi; Saito, Rintaro; Osato, Naoki; Fukuda, Shiro; Sato, Kenjiro; Watahiki, Akira; Hirozane-Kishikawa, Tomoko; Nakamura, Mari; Shibata, Yuko; Yasunishi, Ayako; Kikuchi, Noriko; Yoshiki, Atsushi; Kusakabe, Moriaki; Gustincich, Stefano; Beisel, Kirk; Pavan, William; Aidinis, Vassilis; Nakagawara, Akira; Held, William A; Iwata, Hiroo; Kono, Tomohiro; Nakauchi, Hiromitsu; Lyons, Paul; Wells, Christine; Hume, David A; Fagiolini, Michela; Hensch, Takao K; Brinkmeier, Michelle; Camper, Sally; Hirota, Junji; Mombaerts, Peter; Muramatsu, Masami; Okazaki, Yasushi; Kawai, Jun; Hayashizaki, Yoshihide

    2003-06-01

    We report the construction of the mouse full-length cDNA encyclopedia,the most extensive view of a complex transcriptome,on the basis of preparing and sequencing 246 libraries. Before cloning,cDNAs were enriched in full-length by Cap-Trapper,and in most cases,aggressively subtracted/normalized. We have produced 1,442,236 successful 3'-end sequences clustered into 171,144 groups, from which 60,770 clones were fully sequenced cDNAs annotated in the FANTOM-2 annotation. We have also produced 547,149 5' end reads,which clustered into 124,258 groups. Altogether, these cDNAs were further grouped in 70,000 transcriptional units (TU),which represent the best coverage of a transcriptome so far. By monitoring the extent of normalization/subtraction, we define the tentative equivalent coverage (TEC),which was estimated to be equivalent to >12,000,000 ESTs derived from standard libraries. High coverage explains discrepancies between the very large numbers of clusters (and TUs) of this project,which also include non-protein-coding RNAs,and the lower gene number estimation of genome annotations. Altogether,5'-end clusters identify regions that are potential promoters for 8637 known genes and 5'-end clusters suggest the presence of almost 63,000 transcriptional starting points. An estimate of the frequency of polyadenylation signals suggests that at least half of the singletons in the EST set represent real mRNAs. Clones accounting for about half of the predicted TUs await further sequencing. The continued high-discovery rate suggests that the task of transcriptome discovery is not yet complete.

  12. A Review of Routledge Encyclopedia of Translation Studies(2nd ed. )%翻译研究的全息扫描——Routledge Encyclopedia of Translation Studies第二版简评

    Institute of Scientific and Technical Information of China (English)

    方梦之

    2010-01-01

    @@ 1.概况 1998年Routledge出版公司出版了Routledge Encyclopedia of Translation Studies()(以下简称"一版").在一版的基础上,原编者Mona Baker与Gabeiela Saldanha合作,于2009年编辑出版了该书的第二版(以下简称"二版").如果说一版的厚重与宏富给译界带来普遍惊喜的话,那么二版的问世更让人们看到了译学的深邃与宽广.

  13. The Fated Death of Tess

    Institute of Scientific and Technical Information of China (English)

    李莉

    2012-01-01

      The theme of this essay is about the fated deaths of Tess.The emphasis is‘inevitability’. Tess’s Death is mainly due to the social influence and man-made factors. Because of the low social status and moral conceptions, there is no living room left for Tess. Her parents push her get closer to her tragedy as well. Alec and Angel are the two persons who directly and indirectly cause Tess’s death. In addition, there are also some subjective causes for her doom. The symbolic red in the novel intentionally indicates the’inevitability’of her death.

  14. Encyclopedia Logic and Literature Research%《小逻辑》与文学研究

    Institute of Scientific and Technical Information of China (English)

    公炎冰

    2001-01-01

    Encyclopedia Logic is one of Hegal's works in which there is least idealism and most materialism. It illustrates the process in which the perceptual reflecting the material world develops into the consciousness reflecting the objective material world, in which medium lies in relations, and finally reaches the absolute ideal where the subjective and objective, theory and practice, the finite and infinite are united. Judging from the agreement between the course of history and logic, Hegal' s dialectical methods lie in his logical summary and outline, and his highest achievements and their essence. In this article, Hegal's dialectical methods of "the agreement and conversion between the thought and reality is used in the individual theoretical research of the literary practice-the literary form and its research method to try to reach the philosophical rational level in theoretical research.%《小逻辑》是黑格尔唯心主义最少,唯物主义最多的一部哲学著作。它论述的是由感性的反映物质世界,发展为由知性反映有中介性在关系中的客观现实世界,最后发展到理性的辩证的上升到主观与客观、理论与实践、有限与无限得到统一的全体的绝对理念。从历史的和逻辑的进程的一致来看,黑格尔逻辑学的总结和概要、最高成就和实质,就是辩证的方法。本文将黑格尔"思想与现实一致和转换"的辩证方法,运用于文学实践的个别理论研究之中--文学的形式和文学的研究方法,力图在理论研究层面,能上升到哲学的理性高度。

  15. The StarDate Black Hole Encyclopedia Website blackholes.stardate.org

    Science.gov (United States)

    Gebhardt, Karl; Benningfield, D.; Preston, S.

    2013-01-01

    The StarDate Black Hole Encyclopedia website was developed over the past seven years to provide an extensive but easy-to-read resource for the public and students. A Spanish-language version, Enciclopedia de agujeros negros, is also available at blackholes.radiouniverso.org. Evaluation shows that the sites are used by the public, students, and astronomy professionals, and the site is among the top references in most web searches for individual black holes. The site comprises seven major subsections: Basics, Directory, Research, History, Pop Culture, News, and Resources. The Basics section introduces black holes, explains how they are discovered and studied, and covers their basis in the theory of gravity. This section also includes a six-minute video introduction, “Black Holes: Stranger than Fiction.” The Directory section contains extensive descriptions of more than 80 well-known stellar, intermediate, and supermassive black holes as well as images and vital statistics of each. The Research section takes a look at three NSF-funded projects, including the work of Andrea Ghez, Karl Gebhardt and Jenny Greene, and the LIGO project. The History section provides a timeline of black holes from Isaac Newton to the present. Some of the best and worst roles played by black holes in films, TV shows, and books are included in the Pop Culture section (and pop culture references and images are sprinkled through the rest of the site). An archive of news reports about black holes is available in the News section, which provides links to the original stories or press releases. And the Resources section offers FAQs, articles from StarDate magazine and radio programs, activities for students that are tied to national standards, a glossary, and a reading list of books and websites. We have conducted both quantitative and qualitative evaluation on the black hole websites. This material is based upon work supported by the National Science Foundation under Grant No. 0935841. Any

  16. 在线百科间的标签推荐算法%Tag Recommendation among Different Online Encyclopedia Systems

    Institute of Scientific and Technical Information of China (English)

    刘阔; 姚舒扬; 邓志鸿

    2012-01-01

    Online encyclopedia systems have become an important way for people to acquire knowledge. As an important part of online encyclopedia systems, tags of each page not only help users get more relevant information for further reading, but also enhance the efficiency of the retrieval system. After taking full advantage of linkage relations between pages of online encyclopedia systems, this paper proposes a new method, HVSM (homogeneous principle based vector space model), which is universal and aims at recommending tags between different online encyclopedia systems. Experimental results show that this method can achieve a good accuracy which is higher than NAM (naive recommendation model). Some useful conclusions are obtained through the analysis of experimental results, which lay a solid foundation for further research.%信息社会中在线百科已成为人们获取知识的重要途径,而在线百科的标签系统作为其重要组成部分,不仅可以帮助人们在浏览某张页面时获取其他相关页面的信息,而且对于海量文本分类,以及提高在线百科检索系统的检索效率都有很大帮助.充分利用在线百科页面间的链接关系,提出了一种基于页面间的同质性原理和向量空间模型的全新针对在线百科的标签推荐算法HVSM(homogeneous principle based vector space model).该标签推荐算法具有普适性,可在不同在线百科系统间推荐标签.实验结果表明,通过与朴素推荐算法NAM(na(i)ve recommendation model)进行比较,新的推荐算法可以达到更高的准确率.并且通过对实验数据进行分析,得到了若干有益的结论,为今后的研究工作奠定了基础.

  17. Caenorhabditis elegans vulval cell fate patterning

    Science.gov (United States)

    Félix, Marie-Anne

    2012-08-01

    The spatial patterning of three cell fates in a row of competent cells is exemplified by vulva development in the nematode Caenorhabditis elegans. The intercellular signaling network that underlies fate specification is well understood, yet quantitative aspects remain to be elucidated. Quantitative models of the network allow us to test the effect of parameter variation on the cell fate pattern output. Among the parameter sets that allow us to reach the wild-type pattern, two general developmental patterning mechanisms of the three fates can be found: sequential inductions and morphogen-based induction, the former being more robust to parameter variation. Experimentally, the vulval cell fate pattern is robust to stochastic and environmental challenges, and minor variants can be detected. The exception is the fate of the anterior cell, P3.p, which is sensitive to stochastic variation and spontaneous mutation, and is also evolving the fastest. Other vulval precursor cell fates can be affected by mutation, yet little natural variation can be found, suggesting stabilizing selection. Despite this fate pattern conservation, different Caenorhabditis species respond differently to perturbations of the system. In the quantitative models, different parameter sets can reconstitute their response to perturbation, suggesting that network variation among Caenorhabditis species may be quantitative. Network rewiring likely occurred at longer evolutionary scales.

  18. Environmental fate and behaviour of nanomaterials

    DEFF Research Database (Denmark)

    Hartmann, Nanna Isabella Bloch; Skjolding, Lars Michael; Hansen, Steffen Foss

    In the current report, the existing knowledge on the fate of nanomaterials in the environment is reviewed and the major knowledge gaps are identified.......In the current report, the existing knowledge on the fate of nanomaterials in the environment is reviewed and the major knowledge gaps are identified....

  19. Fate mapping of dendritic cells

    Directory of Open Access Journals (Sweden)

    Barbara Ursula Schraml

    2015-05-01

    Full Text Available Dendritic cells (DCs are a heterogeneous group of mononuclear phagocytes with versatile roles in immunity. They are classified predominantly based on phenotypic and functional properties, namely their stellate morphology, expression of the integrin CD11c and major histocompatibility class II molecules, as well as their superior capacity to migrate to secondary lymphoid organs and stimulate naïve T cells. However, these attributes are not exclusive to DCs and often change within inflammatory or infectious environments. This led to debates over cell identification and questioned even the mere existence of DCs as distinct leukocyte lineage. Here, we review experimental approaches taken to fate map DCs and discuss how these have shaped our understanding of DC ontogeny and lineage affiliation. Considering the ontogenetic properties of DCs will help to overcome the inherent shortcomings of purely phenotypic- and function-based approaches to cell definition and will yield a more robust way of DC classification.

  20. ASSESSMENT OF THE SUBSURFACE FATE OF MONOETHANOLAMINE

    Energy Technology Data Exchange (ETDEWEB)

    James A. Sorensen; John R. Gallagher; Lori G. Kays

    2000-05-01

    Burial of amine reclaimer unit sludges and system filters has resulted in contamination of soil at the CanOxy Okotoks decommissioned sour gas-processing plant with amines, amine byproducts, and salts. A three-phase research program was devised to investigate the natural attenuation process that controls the subsurface transport and fate of these contaminants and to apply the results toward the development of a strategy for the remediation of this type of contamination in soils. Phase I experimental activities examined interactions between monoethanolamine (MEA) and sediment, the biodegradability of MEA in soils at various concentrations and temperatures, and the biodegradability of MEA sludge contamination in a soil slurry bioreactor. The transport and fate of MEA in the subsurface was found to be highly dependant on the nature of the release, particularly MEA concentration and conditions of the subsurface environment, i.e., pH, temperature, and oxygen availability. Pure compound biodegradation experiments in soil demonstrated rapid biodegradation of MEA under aerobic conditions and moderate temperatures (>6 C). Phase II landfarming activities confirmed that these contaminants are readily biodegradable in soil under ideal laboratory conditions, yet considerable toxicity was observed in the remaining material. Examination of water extracts from the treated soil suggested that the toxicity is water-soluble. Phase II activities led to the conclusion that landfarming is not the most desirable bioremediation technique; however, an engineered biopile with a leachate collection system could remove the remaining toxic fraction from the soil. Phase III was initiated to conduct field-based experimental activities to examine the optimized remediation technology. A pilot-scale engineered biopile was constructed at a decommissioned gas-sweetening facility in Okotoks, Alberta, Canada. On the basis of a review of the analytical and performance data generated from soil and

  1. The Liber Compostelle Attributed to Friar Bonaventura of Iseo: The Textual Tradition of a Thirteenth-Century Alchemical Encyclopedia.

    Science.gov (United States)

    Succurro, Maria Chiara

    2016-08-01

    The Liber Compostelle is an alchemical encyclopedia associated with the name of Bonaventura of Iseo, a friar of great reputation and an esteemed preacher around the middle of the thirteenth century. It is one of the first works to show an interest in medicine and pharmacology among the Friars Minor. Despite its importance, the Liber Compostelle has never been published. This article investigates the textual history of the treatise, and the problems of its authorship and dating, examining the eight manuscripts that contain the Liber. It shows that the text written around the mid-thirteenth century, probably by Bonaventura, was variously and freely adapted and modified around the end of the century, resulting in two versions of the text. Finally, the article examines the main characteristics of the treatise, such as its compilatory nature, its emphasis on practical applications, and the presence of typical themes of Franciscan alchemical literature.

  2. [The systematization of the sciences as a cultural task. Options for an open understanding of culture in Paul Hinneberg's encyclopedia].

    Science.gov (United States)

    Ziche, Paul

    2008-03-01

    Paul Hinneberg promises, in his multi-volume Kultur der Gegenwart (1906sqq.), to capture the 'culture' of his time in its entirety; only a veritable encyclopedia could be adequate to the task of synthesizing the manifold and disparate tendencies of 'Kultur'. Surprisingly, however, any attempt to make explicit the systematic principles governing his encyclopedic synthesis is missing from his project. It is argued that this--unusual--feature of Hinneberg's Kultur der Gegenwart can itself be understood as a result of typical analyses of 'Kultur' at the turn of the century; culture, as an open, multi-sided, and integrative concept may indeed best be captured in an open system that avoids strict and explicit demarcations. In these respects, the task of capturing Kultur turns out to be closely linked to another task prominent around 1900: that of providing a systematic ordering of the various 'Wissenschaften'.

  3. The test of time. Art encyclopedia and the formation of the canon of seventeenth-century painters in the Low Countries

    NARCIS (Netherlands)

    F.R.R. Vermeylen (Filip); M.F. van Dijck (Maarten); V.J.U. de Laet (Veerle)

    2013-01-01

    markdownabstract__Abstract__ This paper deals with the process of canon formation for Flemish and Dutch painters from the seventeenth century onwards. We examine how the essential art-historical treatises and art encyclopedias since Houbraken’s Grote Schouburgh der Nederlandsche Konstschilders en S

  4. The fate of pancake vortices

    Science.gov (United States)

    Sutyrin, G. G.; Radko, T.

    2017-03-01

    Nonlinear evolution of pancake-like vortices in a uniformly rotating and stratified fluid is studied using a 3D Boussinesq numerical model at large Rossby numbers. After the initial stage of viscous decay, the simulations reveal exponential growth of toroidal circulation cells (aka Taylor vortices) at the peripheral annulus with a negative Rayleigh discriminant. At the nonlinear stage, these thin cells redistribute the angular momentum and density differently at the levels of radial outflow and inflow. Resulting layering, with a vertical stacking of sharp variations in velocity and density, enhances small-scale mixing and energy decay. Characteristic detectable stretching patterns are produced in the density field. The circulation patterns, induced by centrifugal instability, tend to homogenize the angular momentum in the vicinity of the unstable region. We demonstrate that the peak intensity of the cells and the vortex energy decay are dramatically reduced by the earth's rotation due to conservation of total absolute angular momentum. The results have important implications for better understanding the fate of pancake vortices and physical mechanisms of energy transfer in stratified fluids.

  5. Technology.

    Science.gov (United States)

    Online-Offline, 1998

    1998-01-01

    Focuses on technology, on advances in such areas as aeronautics, electronics, physics, the space sciences, as well as computers and the attendant progress in medicine, robotics, and artificial intelligence. Describes educational resources for elementary and middle school students, including Web sites, CD-ROMs and software, videotapes, books,…

  6. Technology

    Directory of Open Access Journals (Sweden)

    Xu Jing

    2016-01-01

    Full Text Available The traditional answer card reading method using OMR (Optical Mark Reader, most commonly, OMR special card special use, less versatile, high cost, aiming at the existing problems proposed a method based on pattern recognition of the answer card identification method. Using the method based on Line Segment Detector to detect the tilt of the image, the existence of tilt image rotation correction, and eventually achieve positioning and detection of answers to the answer sheet .Pattern recognition technology for automatic reading, high accuracy, detect faster

  7. Fate of Pyrethroids in Farmland Ponds

    DEFF Research Database (Denmark)

    Mogensen, B. B.; Sørensen, P. B.; Stuer-Lauridsen, F.;

    Pyrethroids constitute a group of widely used insecticides, which are toxic to aquatic organisms. This report presents the results from a 2-year study of the fate of pyrethroids in ponds, i.e. their distribution in the water column, the sediment and the surface microlayer respectively. The measur......Pyrethroids constitute a group of widely used insecticides, which are toxic to aquatic organisms. This report presents the results from a 2-year study of the fate of pyrethroids in ponds, i.e. their distribution in the water column, the sediment and the surface microlayer respectively...

  8. Fate of HERS during Tooth Root Development

    OpenAIRE

    HUANG, XIAOFENG; BRINGAS, PABLO; Slavkin, Harold C.; Chai, Yang

    2009-01-01

    Tooth root development begins after the completion of crown formation in mammals. Previous studies have shown that Hertwig's epithelial root sheath (HERS) plays an important role in root development, but the fate of HERS has remained unknown. In order to investigate the morphological fate and analyze the dynamic movement of HERS cells in vivo, we generated K14-Cre;R26R mice. HERS cells are detectable on the surface of the root throughout root formation and do not disappear. Most of the HERS c...

  9. On the Formation of Tess’ Tragic Fate

    Institute of Scientific and Technical Information of China (English)

    张颖

    2014-01-01

    "Tess of the d’Urbervilles"is one of the most important books of Thomas Hardy.The heroine Tess is the most outstanding female image created by Hardy and also an idealized artistic model.Her fate moves the readers deeply and represents the beauty of the book.By analysing the special social conditions,we can see the typicalness and the inevitability of Tess’tragic fate.Tess naturally becomes the typical victim of the cruel social reality.Hardy’s realistic thought about the society and his progressive ideas to which oughts to be paid attention by us embodies in the novel.

  10. A systematic study on drug-response associated genes using baseline gene expressions of the Cancer Cell Line Encyclopedia

    Science.gov (United States)

    Liu, Xiaoming; Yang, Jiasheng; Zhang, Yi; Fang, Yun; Wang, Fayou; Wang, Jun; Zheng, Xiaoqi; Yang, Jialiang

    2016-03-01

    We have studied drug-response associated (DRA) gene expressions by applying a systems biology framework to the Cancer Cell Line Encyclopedia data. More than 4,000 genes are inferred to be DRA for at least one drug, while the number of DRA genes for each drug varies dramatically from almost 0 to 1,226. Functional enrichment analysis shows that the DRA genes are significantly enriched in genes associated with cell cycle and plasma membrane. Moreover, there might be two patterns of DRA genes between genders. There are significantly shared DRA genes between male and female for most drugs, while very little DRA genes tend to be shared between the two genders for a few drugs targeting sex-specific cancers (e.g., PD-0332991 for breast cancer and ovarian cancer). Our analyses also show substantial difference for DRA genes between young and old samples, suggesting the necessity of considering the age effects for personalized medicine in cancers. Lastly, differential module and key driver analyses confirm cell cycle related modules as top differential ones for drug sensitivity. The analyses also reveal the role of TSPO, TP53, and many other immune or cell cycle related genes as important key drivers for DRA network modules. These key drivers provide new drug targets to improve the sensitivity of cancer therapy.

  11. KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model.

    Science.gov (United States)

    Du, Junli; Yuan, Zhifa; Ma, Ziwei; Song, Jiuzhou; Xie, Xiaoli; Chen, Yulin

    2014-07-29

    The dynamic impact approach (DIA) represents an alternative to overrepresentation analysis (ORA) for functional analysis of time-course experiments or those involving multiple treatments. The DIA can be used to estimate the biological impact of the differentially expressed genes (DEGs) associated with particular biological functions, for example, as represented by the Kyoto encyclopedia of genes and genomes (KEGG) annotations. However, the DIA does not take into account the correlated dependence structure of the KEGG pathway hierarchy. We have developed herein a path analysis model (KEGG-PATH) to subdivide the total effect of each KEGG pathway into the direct effect and indirect effect by taking into account not only each KEGG pathway itself, but also the correlation with its related pathways. In addition, this work also attempts to preliminarily estimate the impact direction of each KEGG pathway by a gradient analysis method from principal component analysis (PCA). As a result, the advantage of the KEGG-PATH model is demonstrated through the functional analysis of the bovine mammary transcriptome during lactation.

  12. Tu-yuan-ce-fu and Compilation of Encyclopedia in the Tang Dynasty%《兔园策府》与唐代类书的编纂

    Institute of Scientific and Technical Information of China (English)

    王璐

    2015-01-01

    类书起源很早,是中国传统文化的产物。唐代修撰类书,始于建国之初,大抵是出于帝王之愿,试图把所有的知识进行分类便于提纲挈领地学习,因而唐代还有不少文人学士所编的类书就因循这样的法则。敦煌本《兔园策府》也是其中之一,它的白文本在唐宋间十分流行,《兔园策府》成书时间在《初学记》前,因而偶句之体例不是自徐坚始,很有可能始自《兔园策府》。%The encyclopedia originated early, is the product of Chinese traditional culture. The encyclopedias com-pilation started at the foundation of Tang Dynasty, which is probably out of the emperor willing to try to put all the knowledge classification facilitates learning focused on the vital. Then the encyclopedias compiled by scholars was procrastinating this rule as well in Tang Dynasty. Tu-yuan-ce-fu ( Encyclopedia Rabbit Garden) of Dunhuang edi-tion is one of them;its full form was very popular among the Tang and Song Dynasties. Tu-yuan-ce-fu was comple-ted before Chu-xue-ji ( The Primary Anthology) . Alternate style was not created by Xu Jian but probably from Tu-yuan-ce-fu.

  13. Tu-yuan-ce-fu and Compilation of Encyclopedia in the Tang Dynasty%《兔园策府》与唐代类书的编纂

    Institute of Scientific and Technical Information of China (English)

    王璐

    2014-01-01

    类书起源很早,是中国传统文化的产物。唐代修撰类书,始于建国之初,大抵是出于帝王之愿,试图把所有的知识进行分类便于提纲挈领地学习,因而唐代还有不少文人学士所编的类书就因循这样的法则。敦煌本《兔园策府》也是其中之一,它的白文本在唐宋间十分流行,《兔园策府》成书时间在《初学记》前,因而偶句之体例不是自徐坚始,很有可能始自《兔园策府》。%The encyclopedia originated early, is the product of Chinese traditional culture. The encyclopedias com-pilation started at the foundation of Tang Dynasty, which is probably out of the emperor willing to try to put all the knowledge classification facilitates learning focused on the vital. Then the encyclopedias compiled by scholars was procrastinating this rule as well in Tang Dynasty. Tu-yuan-ce-fu ( Encyclopedia Rabbit Garden) of Dunhuang edi-tion is one of them;its full form was very popular among the Tang and Song Dynasties. Tu-yuan-ce-fu was comple-ted before Chu-xue-ji ( The Primary Anthology) . Alternate style was not created by Xu Jian but probably from Tu-yuan-ce-fu.

  14. A contrastive analysis of Chinese and American electronic encyclopedias%中美电子百科全书对比分析

    Institute of Scientific and Technical Information of China (English)

    白崇远; 常爱东

    2001-01-01

    本文从基本数据、系统功能结构、检索途径三个方面对和Microsoft Encarta Encyclopedia deluxe 99两种电子百科全书进行了对比分析,剖析了各自的特点,并总结了现代电子百科全书的发展趋势.

  15. Environmental fate of alachlor and metolachlor.

    Science.gov (United States)

    Chesters, G; Simsiman, G V; Levy, J; Alhajjar, B J; Fathulla, R N; Harkin, J M

    1989-01-01

    Decision-makers, scientists, and the interested public should be informed what future research and education is needed if a strong pesticide regulatory program is imposed. Recommendations are intended to highlight research gaps. Some may be of general concern and apply to many pesticides. A situation that calls into question the value of many of our management decisions, is the lack of good field-scale experimentation and of logical mechanisms for translating and extrapolating laboratory data to field-scale dimensions. Many experiments were not designed to allow application of basic statistical criteria. High costs often preclude sufficient replication in field-scale experiments so that researchers must make the "no-win" choice between doing one investigation well or doing two or three poorly. The following observations about alachlor and metolachlor are provided: Pysicochemical properties are accurately determined. The herbicides' modes of action and plant selectivity have received a great deal of attention, but gaps remain in defining which of three modes of action are most important. Geographic distribution and extent of residue contamination of surface waters is documented, but groundwater contamination is poorly defined. Any groundwater monitoring protocol should limit the investigation based on sound scientific judgment since a nationwide monitoring network cannot be economically justified. Enough data are needed, however, to allow mathematical model development, verification and validation for a diversity of soil, geographic, climatic, and agricultural management conditions. In view of the importance of adsorption in determining the fate of pesticides, improved methods of determining adsorption coefficients (KD) are needed particularly for very low concentrations. The impact of soil aggregation on adsorption/desorption needs to be examined. The role of temperature and water content in adsorption/desorption processes needs clearer definition. Although

  16. (Environmental technology)

    Energy Technology Data Exchange (ETDEWEB)

    Boston, H.L.

    1990-10-12

    The traveler participated in a conference on environmental technology in Paris, sponsored by the US Embassy-Paris, US Environmental Protection Agency (EPA), the French Environmental Ministry, and others. The traveler sat on a panel for environmental aspects of energy technology and made a presentation on the potential contributions of Oak Ridge National Laboratory (ORNL) to a planned French-American Environmental Technologies Institute in Chattanooga, Tennessee, and Evry, France. This institute would provide opportunities for international cooperation on environmental issues and technology transfer related to environmental protection, monitoring, and restoration at US Department of Energy (DOE) facilities. The traveler also attended the Fourth International Conference on Environmental Contamination in Barcelona. Conference topics included environmental chemistry, land disposal of wastes, treatment of toxic wastes, micropollutants, trace organics, artificial radionuclides in the environment, and the use biomonitoring and biosystems for environmental assessment. The traveler presented a paper on The Fate of Radionuclides in Sewage Sludge Applied to Land.'' Those findings corresponded well with results from studies addressing the fate of fallout radionuclides from the Chernobyl nuclear accident. There was an exchange of new information on a number of topics of interest to DOE waste management and environmental restoration needs.

  17. SIMPLEBOX: a generic multimedia fate evaluation model

    NARCIS (Netherlands)

    Meent D van de

    1993-01-01

    This document describes the technical details of the multimedia fate model SimpleBox, version 1.0 (930801). SimpleBox is a multimedia box model of what is commonly referred to as a "Mackay-type" model ; it assumes spatially homogeneous environmental compartments (air, water, suspended matter, aquati

  18. SIMPLEBOX: a generic multimedia fate evaluation model

    NARCIS (Netherlands)

    van de Meent D

    1993-01-01

    This document describes the technical details of the multimedia fate model SimpleBox, version 1.0 (930801). SimpleBox is a multimedia box model of what is commonly referred to as a "Mackay-type" model ; it assumes spatially homogeneous environmental compartments (air, water, suspended m

  19. Apical versus Basal Neurogenesis Directs Cortical Interneuron Subclass Fate

    Directory of Open Access Journals (Sweden)

    Timothy J. Petros

    2015-11-01

    Full Text Available Fate determination in the mammalian telencephalon, with its diversity of neuronal subtypes and relevance to neuropsychiatric disease, remains a critical area of study in neuroscience. Most studies investigating this topic focus on the diversity of neural progenitors within spatial and temporal domains along the lateral ventricles. Often overlooked is whether the location of neurogenesis within a fate-restricted domain is associated with, or instructive for, distinct neuronal fates. Here, we use in vivo fate mapping and the manipulation of neurogenic location to demonstrate that apical versus basal neurogenesis influences the fate determination of major subgroups of cortical interneurons derived from the subcortical telencephalon. Somatostatin-expressing interneurons arise mainly from apical divisions along the ventricular surface, whereas parvalbumin-expressing interneurons originate predominantly from basal divisions in the subventricular zone. As manipulations that shift neurogenic location alter interneuron subclass fate, these results add an additional dimension to the spatial-temporal determinants of neuronal fate determination.

  20. Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online

    Directory of Open Access Journals (Sweden)

    Chen Chang-Han

    2007-02-01

    Full Text Available Abstract Background The significant advances in microarray and proteomics analyses have resulted in an exponential increase in potential new targets and have promised to shed light on the identification of disease markers and cellular pathways. We aim to collect and decipher the HCC-related genes at the systems level. Results Here, we build an integrative platform, the Encyclopedia of Hepatocellular Carcinoma genes Online, dubbed EHCO http://ehco.iis.sinica.edu.tw, to systematically collect, organize and compare the pileup of unsorted HCC-related studies by using natural language processing and softbots. Among the eight gene set collections, ranging across PubMed, SAGE, microarray, and proteomics data, there are 2,906 genes in total; however, more than 77% genes are only included once, suggesting that tremendous efforts need to be exerted to characterize the relationship between HCC and these genes. Of these HCC inventories, protein binding represents the largest proportion (~25% from Gene Ontology analysis. In fact, many differentially expressed gene sets in EHCO could form interaction networks (e.g. HBV-associated HCC network by using available human protein-protein interaction datasets. To further highlight the potential new targets in the inferred network from EHCO, we combine comparative genomics and interactomics approaches to analyze 120 evolutionary conserved and overexpressed genes in HCC. 47 out of 120 queries can form a highly interactive network with 18 queries serving as hubs. Conclusion This architectural map may represent the first step toward the attempt to decipher the hepatocarcinogenesis at the systems level. Targeting hubs and/or disruption of the network formation might reveal novel strategy for HCC treatment.

  1. Intermittent rainfall in dynamic multimedia fate modeling.

    Science.gov (United States)

    Hertwich, E G

    2001-03-01

    It has been shown that steady-state multimedia models (level III fugacity models) lead to a substantial underestimate of air concentrations for chemicals with a low Henry's law constant (H multimedia models are used to estimate the spatial range or inhalation exposure. A dynamic model of pollutant fate is developed for conditions of intermittent rainfall to calculate the time profile of pollutant concentrations in different environmental compartments. The model utilizes a new, mathematically efficient approach to dynamic multimedia fate modeling that is based on the convolution of solutions to the initial conditions problem. For the first time, this approach is applied to intermittent conditions. The investigation indicates that the time-averaged pollutant concentrations under intermittent rainfall can be approximated by the appropriately weighted average of steady-state concentrations under conditions with and without rainfall.

  2. Engineering the human pluripotent stem cell microenvironment to direct cell fate

    Science.gov (United States)

    Hazeltine, Laurie B.; Selekman, Joshua A.; Palecek, Sean P.

    2013-01-01

    Human pluripotent stem cells (hPSCs), including both embryonic stem cells and induced pluripotent stem cells, offer a potential cell source for research, drug screening, and regenerative medicine applications due to their unique ability to self-renew or differentiate to any somatic cell type. Before the full potential of hPSCs can be realized, robust protocols must be developed to direct their fate. Cell fate decisions are based on components of the surrounding microenvironment, including soluble factors, substrate or extracellular matrix, cell-cell interactions, mechanical forces, and 2D or 3D architecture. Depending on their spatio-temporal context, these components can signal hPSCs to either self-renew or differentiate to cell types of the ectoderm, mesoderm, or endoderm. Researchers working at the interface of engineering and biology have identified various factors which can affect hPSC fate, often based on lessons from embryonic development, and they have utilized this information to design in vitro niches which can reproducibly direct hPSC fate. This review highlights culture systems that have been engineered to promote self-renewal or differentiation of hPSCs, with a focus on studies that have elucidated the contributions of specific microenvironmental cues in the context of those culture systems. We propose the use of microsystems technologies for high-throughput screening of spatial-temporal presentation of cues, as this has been demonstrated to be a powerful approach for differentiating hPSCs to desired cell types. PMID:23510904

  3. Path dependence in technologies and organizations: a concise guide

    OpenAIRE

    Castaldi, C Carolina; Dosi, G; Paraskevopoulou, E

    2011-01-01

    The note on which an entry for the Palgrave Encyclopedia of Strategic Management will draw offers a beginner's guide to path dependency in technologies and organizations. We address the very meaning of the concept and its centrality in various aspects of economic analysis. We outline the various levels of the ecomic system in which it is observable, its sources, concequences and different formal representations of path dependent processes.

  4. Biological fate of low-calorie sweeteners.

    Science.gov (United States)

    Magnuson, Bernadene A; Carakostas, Michael C; Moore, Nadia H; Poulos, Sylvia P; Renwick, Andrew G

    2016-11-01

    With continued efforts to find solutions to rising rates of obesity and diabetes, there is increased interest in the potential health benefits of the use of low- and no-calorie sweeteners (LNCSs). Concerns about safety often deter the use of LNCSs as a tool in helping control caloric intake, even though the safety of LNCS use has been affirmed by regulatory agencies worldwide. In many cases, an understanding of the biological fate of the different LNSCs can help health professionals to address safety concerns. The objectives of this review are to compare the similarities and differences in the chemistry, regulatory status, and biological fate (including absorption, distribution, metabolism, and excretion) of the commonly used LNCSs: acesulfame potassium, aspartame, saccharin, stevia leaf extract (steviol glycoside), and sucralose. Understanding the biological fate of the different LNCSs is helpful in evaluating whether reports of biological effects in animal studies or in humans are indicative of possible safety concerns. Illustrations of the usefulness of this information to address questions about LNCSs include discussion of systemic exposure to LNCSs, the use of sweetener combinations, and the potential for effects of LNCSs on the gut microflora. © The Author(s) 2016. Published by Oxford University Press on behalf of the International Life Sciences Institute. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  5. Approach to Recognizing Chinese Nominal Metaphor Based on Online-Encyclopedia%基于百科资源的名词性隐喻识别

    Institute of Scientific and Technical Information of China (English)

    冯帅; 苏畅; 陈怡疆

    2013-01-01

    Aim at the low coverage of current hand-coded knowledge base used in the metaphor recognition, a Chinese nominal metaphor recognition method based on exploiting the online encyclopedia resource is proposed. A noun is represented as a page in the encyclopedia. Capture the world knowledge from the page of encyclopedia, calculates the relatedness between the pages of the two nouns in the nominal reference by applying information retrieval methods. The relatedness determines the reference is metaphorical or not. The experimental results shows that the accuracy of metaphorical/normal references recognition can reach 81.06%by using BaiduBaike. It supports the validity, efficiency of this method.%针对现有隐喻计算知识库的广度和深度不足问题,提出了引入了网络百科资源作为隐喻识别的世界知识库的方法.利用信息检索技术,从概念对应的百科页面中获取概念的背景世界知识,计算两个概念的世界知识的重合程度,作为判断它们是否属于同一个概念域的依据,进行隐喻的识别.实验结果表明在使用百度百科作为世界知识库时,隐喻/常规表达的识别正确率达到81.06%,算法的有效性得到证明.

  6. 《永乐大典》所录《文选》考释%A Study on Literary SelectionsRecorded inYongle Encyclopedia

    Institute of Scientific and Technical Information of China (English)

    钟仕伦

    2015-01-01

    47 articles in the book ofLiterary Selections are recorded inYongle Encyclopedia. Except for a few articles which are recorded completely, the majority of the rest articles are excerpts recorded according to the rhythmic entries ofYongle Encyclopedia. The version ofLiterary Selectionswhich is recorded inYongle Encyclopedia seems to originate from Ganzhou-School Version belonging to Six Ministers’ Annotation system which is annotated by Lishan and other Five Ministers. According to the survey, theLiterary Selections recorded in Yongle Encyclopedianot only provide an object to research for its versions but also provide certain documentary values for the emendation of such Literary Selections’ versions as Tangchao Annotation, DunHuang Manuscript, Hu Sculpture, Mingzhou Annotation as well as Jingsong Annotation.%今存《永乐大典》实际所录《文选》共47则,除少数作品为全部收录外,大多数都是与《永乐大典》的韵目相关的《文选》作品的摘录。《永乐大典》所录《文选》的版本似源于赣州学刊本,为六臣注本中的“李善—五臣注”系统。从考释的情况看,《永乐大典》所录《文选》不仅为《文选》版本学提供了一个可资研究的对象,而且有用于唐钞《文选》集注本、敦煌写本、胡刻本、明州本和景宋本的校勘,具有一定的文献价值。

  7. Metadata Designing in the Compilation of Dictionary and Encyclopedia%术语辞书编纂中的元数据设计

    Institute of Scientific and Technical Information of China (English)

    全如瑊; 李芸

    2015-01-01

    Dictionary and encyclopedia are important sources for scientific and technical data. ln order to assure the quality, we need to control the contents of dictionary entry and encyclopedia article. ln this article, we proposed a set of knowledge-oriented metadata ( KOM) for dictionary and encyclopedia making. We also think that more emphasis should be paid on internal control over knowledge contents than those paid on external management of file and work flow.%首先强调了工具书作为用户寻求科技数据的重要来源。接着指出,要保障工具书的质量,就要求对工具书词条的知识内容进行控制。多数词典以形或音作为排序依据,但评价一部工具书的好坏以及是否满足了读者查询知识的需求,概念是其关键因素,因为概念是知识的基本单元。为此,文章最后提出了一套面向知识的元数据( knowledge-oriented metadata,KOM)集合。总而言之,对于条目内容的内在管理远比表面或形式上对文件和工作流的这些外部管理更重要。

  8. How Readers Shape the Content of an Encyclopedia: A Case Study Comparing the German Meyers Konversationslexikon (1885-1890 with Wikipedia (2002-2013

    Directory of Open Access Journals (Sweden)

    Ulrike Spree

    2014-06-01

    Full Text Available How knowledge is negotiated between the makers of encyclopedias and their audiences remains an ongoing question in research on encyclopedias. A comparative content analysis of the published answers of letters to the editor of the German Meyers Konversationslexikon (Korrespondenzblatt from 1885 and the discussion pages of the article potato of the German Wikipedia (2013 reveals continuities as well as changes in the communication between encyclopedia producers and their audiences. The main reasons why readers and editors communicate are the need for updated factual information, an exchange on editorial principles and the intellectual exchange of ideas on ideological and philosophical questions in relation to the encyclopedic content. Editors and readers attach a lot of importance to the process of verifying information through bibliographical references. Whereas, for the editors of Meyers Konversationslexikon the leading role of experts remains undisputed, Wikipedians work in a contradictory situation. They are on the one hand exposing knowledge production to a permanent process of negotiation, thereby challenging the role of experts, on the other hand relying strongly on bibliographical authorities. Whilst the reasons for the communication between readers and editors of Meyers Konversationslexikon and among Wikipedia contributors coincide, the understanding of the roles of readers and editors differ. The editors of the Korrespondenzblatt keep up a lecturing attitude. As opposed to this, administrators in Wikipedia want to encourage participation and strive to develop expertise among the participating contributors. Albeit power relations between administrators, regular authors, occasional authors and readers continue to exist they are comparatively flat and transient. Regardless of these differences, the comparison between Meyers Konversationslexikon and Wikipedia indicates that the sine qua non for activating an upwards spiral of quality

  9. Encyclopedia of the Arctic

    National Research Council Canada - National Science Library

    Nuttall, M

    2005-01-01

    ..., physical processes, life sciences, and environmental change. This work is the result of over 375 international scholars and writers in all fields and relate to the eight Arctic countries: Canada, USA (Alaska), Greenland (Denmark...

  10. Encyclopedia of distances

    CERN Document Server

    Deza, Michel Marie

    2014-01-01

    This updated and revised third edition of the leading reference volume on distance metrics includes new items from very active research areas in the use of distances and metrics such as geometry, graph theory, probability theory and analysis. Among the new topics included are, for example, polyhedral metric space, nearness matrix problems, distances between belief assignments, distance-related animal settings, diamond-cutting distances, natural units of length, Heidegger’s de-severance distance, and brain distances. The publication of this volume coincides with intensifying research efforts into metric spaces and especially distance design for applications. Accurate metrics have become a crucial goal in computational biology, image analysis, speech recognition and information retrieval. Leaving aside the practical questions that arise during the selection of a ‘good’ distance function, this work focuses on providing the research community with an invaluable comprehensive listing of the main available di...

  11. Two encyclopedia contributions

    DEFF Research Database (Denmark)

    Andersen, Per Kragh

    2003-01-01

    censoring; Cox regression model; counting process; event history analysis; intensity process; multi-state model; non-parametric inference; parametric models; survival analysis; Cox's proportional hazards model; hazard function, regression model; time-dependent covariate; time scale...

  12. Encyclopedia of distances

    CERN Document Server

    Deza, Michel Marie

    2016-01-01

    This 4th edition of the leading reference volume on distance metrics is characterized by updated and rewritten sections on some items suggested by experts and readers, as well a general streamlining of content and the addition of essential new topics. Though the structure remains unchanged, the new edition also explores recent advances in the use of distances and metrics for e.g. generalized distances, probability theory, graph theory, coding theory, data analysis. New topics in the purely mathematical sections include e.g. the Vitanyi multiset-metric, algebraic point-conic distance, triangular ratio metric, Rossi-Hamming metric, Taneja distance, spectral semimetric between graphs, channel metrization, and Maryland bridge distance. The multidisciplinary sections have also been supplemented with new topics, including: dynamic time wrapping distance, memory distance, allometry, atmospheric depth, elliptic orbit distance, VLBI distance measurements, the astronomical system of units, and walkability distance. Lea...

  13. Elderly Adi Women of Arunachal Pradesh: "Living Encyclopedias" and Cultural Refugia in Biodiversity Conservation of the Eastern Himalaya, India

    Science.gov (United States)

    Singh, Ranjay K.; Rallen, Orik; Padung, Egul

    2013-09-01

    Elderly women of a particular socioecological system are considered to be "living encyclopedias" in biocultural knowledge systems. These women play a pivotal role in retaining and passing on biodiversity-related traditional knowledge to the next generations. Unfortunately the fast changing sociocultural values and the impact of modernity have rendered their knowledge somewhat less valuable and they are being treated as "cultural refugia." Our study on the importance of these women in the conservation of indigenous biodiversity was conducted in 14 randomly selected villages dominated by the Adi tribe of East Siang District, Arunachal Pradesh (northeast India). Data were collected from 531 women (381 elderly and 150 young to middle aged) during 2003-2008 using conventional social science methods and participatory rural appraisal. One innovative method, namely "recipe contest," was devised to mobilize Adi women of each village in order to energies them and explore their knowledge relating to traditional foods, ethnomedicines, and conservation of indigenous biodiversity. Results indicated that 55 plant species are being used by elderly Adi women in their food systems, while 34 plant species are integral parts of ethnomedicinal practices. These women identified different plant species found under multistory canopies of community forests. Elderly women were particularly skilled in preparing traditional foods including beverages and held significantly greater knowledge of indigenous plants than younger women. Lifelong experiences and cultural diversity were found to influence the significance of biodiversity use and conservation. The conservation of biodiversity occurs in three different habitats: jhum lands (shifting cultivation), Morang forest (community managed forests), and home gardens. The knowledge and practice of elderly women about habitats and multistory vegetations, regenerative techniques, selective harvesting, and cultivation practices contribute

  14. Organic contaminant transport and fate in the subsurface: evolution of knowledge and understanding

    Science.gov (United States)

    Essaid, Hedeff I.; Bekins, Barbara A.; Cozzarelli, Isabelle M.

    2015-01-01

    Toxic organic contaminants may enter the subsurface as slightly soluble and volatile nonaqueous phase liquids (NAPLs) or as dissolved solutes resulting in contaminant plumes emanating from the source zone. A large body of research published in Water Resources Research has been devoted to characterizing and understanding processes controlling the transport and fate of these organic contaminants and the effectiveness of natural attenuation, bioremediation, and other remedial technologies. These contributions include studies of NAPL flow, entrapment, and interphase mass transfer that have advanced from the analysis of simple systems with uniform properties and equilibrium contaminant phase partitioning to complex systems with pore-scale and macroscale heterogeneity and rate-limited interphase mass transfer. Understanding of the fate of dissolved organic plumes has advanced from when biodegradation was thought to require oxygen to recognition of the importance of anaerobic biodegradation, multiple redox zones, microbial enzyme kinetics, and mixing of organic contaminants and electron acceptors at plume fringes. Challenges remain in understanding the impacts of physical, chemical, biological, and hydrogeological heterogeneity, pore-scale interactions, and mixing on the fate of organic contaminants. Further effort is needed to successfully incorporate these processes into field-scale predictions of transport and fate. Regulations have greatly reduced the frequency of new point-source contamination problems; however, remediation at many legacy plumes remains challenging. A number of fields of current relevance are benefiting from research advances from point-source contaminant research. These include geologic carbon sequestration, nonpoint-source contamination, aquifer storage and recovery, the fate of contaminants from oil and gas development, and enhanced bioremediation.

  15. Organic contaminant transport and fate in the subsurface: Evolution of knowledge and understanding

    Science.gov (United States)

    Essaid, Hedeff I.; Bekins, Barbara A.; Cozzarelli, Isabelle M.

    2015-07-01

    Toxic organic contaminants may enter the subsurface as slightly soluble and volatile nonaqueous phase liquids (NAPLs) or as dissolved solutes resulting in contaminant plumes emanating from the source zone. A large body of research published in Water Resources Research has been devoted to characterizing and understanding processes controlling the transport and fate of these organic contaminants and the effectiveness of natural attenuation, bioremediation, and other remedial technologies. These contributions include studies of NAPL flow, entrapment, and interphase mass transfer that have advanced from the analysis of simple systems with uniform properties and equilibrium contaminant phase partitioning to complex systems with pore-scale and macroscale heterogeneity and rate-limited interphase mass transfer. Understanding of the fate of dissolved organic plumes has advanced from when biodegradation was thought to require oxygen to recognition of the importance of anaerobic biodegradation, multiple redox zones, microbial enzyme kinetics, and mixing of organic contaminants and electron acceptors at plume fringes. Challenges remain in understanding the impacts of physical, chemical, biological, and hydrogeological heterogeneity, pore-scale interactions, and mixing on the fate of organic contaminants. Further effort is needed to successfully incorporate these processes into field-scale predictions of transport and fate. Regulations have greatly reduced the frequency of new point-source contamination problems; however, remediation at many legacy plumes remains challenging. A number of fields of current relevance are benefiting from research advances from point-source contaminant research. These include geologic carbon sequestration, nonpoint-source contamination, aquifer storage and recovery, the fate of contaminants from oil and gas development, and enhanced bioremediation.

  16. Prediction of the environmental fate of chemicals.

    Science.gov (United States)

    Vighi, M; Calamari, D

    1993-01-01

    An overview is presented of the possibilities of applying multimedia compartmental evaluative models, and in particular the fugacity approach, to predict the environmental distribution and fate of organic chemicals. The use of this predictive approach for the evaluation of exposure to pollutants in the aquatic system is described, with reference to different environments or discharge patterns (surface and groundwaters, point and diffuse sources of pollution). The value and limitations of this approach are noted and the need for more research to improve predictive capability and practical usefulness is indicated. Finally some practical applications of evaluative models in the proposal of quantitative indices for ecotoxicological evaluation of risk from chemicals are described.

  17. Mercury Contamination: Fate and Risk Minimization Strategies

    Science.gov (United States)

    Charlet, L.

    Two river basins have been studied in French Guyana, which are subject to heavy mercury contamination, due to illegal gold mining. Within the framework of an interdisciplinary European project, the fate of mercury in water, air, soil, sediment has been studied, as well as its bio-accumulation in the food chain. This bioaccumulation results in the contamination of amerindian populations, through fish consumption. This study has been done in close contact with the economic and political actors. The results of the scientific interdisciplinary study has been translated in terms of risk minimization strategies, which are analyzed in the framework of the European Water Framework Directive.

  18. Investigating Student Ideas About the Fate of the Universe

    Science.gov (United States)

    Conlon, Mallory; Coble, Kimberly A.; Bailey, Janelle M.; Cominsky, Lynn R.

    2015-01-01

    Data from recent surveys have enabled astronomers to precisely quantify the composition of the Universe, though the nature of its primary component, dark energy, remains a mystery. The evolution of dark energy and how it might impact the Universe in the future is an area of intense study. As astronomers further develop an understanding of the fate of the Universe, it is essential to study student ideas on this fate so that instructors can communicate the field's current status and its underpinnings more effectively to their students. In this study, we examine undergraduate students' pre-instruction ideas of the fate of the Universe in twelve semester-long courses at four institutions. We also examine ideas about the fate of the Universe as undergraduate students progress through an introductory or advanced astronomy course at two institutions. The data include pre-course surveys given during the first week of instruction [N=291], midterm and final exam questions [N=58], post-course surveys [N=26], and student interviews [N=7]. We find that, though the term was not necessarily used, students that respond tend to describe a 'big freeze' scenario in the pre-course surveys. Students mention the Universe's expansion when describing how we know the fate of the Universe but do not discuss how we know the Universe is expanding or the relationship between expansion and the fate of the Universe. We also find that students discuss the fate of the solar system or the galaxy in the pre-course surveys instead of the fate of the Universe, suggesting conflation of the Universe with the solar system or the galaxy. At the end of the course, we find that students continue to describe a 'big freeze' scenario and fail to explain how we determine the fate of the Universe. We also find that student tendency to discuss the fate of the solar system or galaxy instead of the fate of the Universe is diminished by the end of the course.

  19. Fate in the religion of the Lepchas

    Directory of Open Access Journals (Sweden)

    Halfdan Siiger

    1967-02-01

    Full Text Available The Lepchas are mountainous agriculturalists who live in the State of Sikkim in the Himalayas and in some adjacent Indian districts. To the Lepchas the supernatural world is divided into two groups, the rum, or the mainly benevolent supernatural beings, and the mung, or the malignant supernatural beings. Any evil occurrence is in the first instance ascribed to the malignant activities of the mung, but it may, under certain conditions, also be due to temporary on the part of some or other rum. If it is obvious that the evil occurrence is caused by a human being, this person is considered to be governed by some mung, or he may, which is much worse, be a mung in human disguise. At all events, any evil occurrence is experienced as the result of the evil will-power of some or other malignant supernatural being. Consequently, we cannot apply our technical term "Fate" to such occurrences, and Fate as an abstract concept cannot be used, when we speak of the Lepchas.

  20. Connecting Mitochondria, Metabolism, and Stem Cell Fate.

    Science.gov (United States)

    Wanet, Anaïs; Arnould, Thierry; Najimi, Mustapha; Renard, Patricia

    2015-09-01

    As sites of cellular respiration and energy production, mitochondria play a central role in cell metabolism. Cell differentiation is associated with an increase in mitochondrial content and activity and with a metabolic shift toward increased oxidative phosphorylation activity. The opposite occurs during reprogramming of somatic cells into induced pluripotent stem cells. Studies have provided evidence of mitochondrial and metabolic changes during the differentiation of both embryonic and somatic (or adult) stem cells (SSCs), such as hematopoietic stem cells, mesenchymal stem cells, and tissue-specific progenitor cells. We thus propose to consider those mitochondrial and metabolic changes as hallmarks of differentiation processes. We review how mitochondrial biogenesis, dynamics, and function are directly involved in embryonic and SSC differentiation and how metabolic and sensing pathways connect mitochondria and metabolism with cell fate and pluripotency. Understanding the basis of the crosstalk between mitochondria and cell fate is of critical importance, given the promising application of stem cells in regenerative medicine. In addition to the development of novel strategies to improve the in vitro lineage-directed differentiation of stem cells, understanding the molecular basis of this interplay could lead to the identification of novel targets to improve the treatment of degenerative diseases.

  1. Heavy metal fates in laboratory bioretention systems.

    Science.gov (United States)

    Sun, Xueli; Davis, Allen P

    2007-01-01

    Key to managing heavy metals in bioretention is to understand their fates in bioretention facilities. In this study, pot prototypes filled with bioretention media were built to simulate the conditions of natural growth of plants. Synthetic runoff with different heavy metal loadings (copper, cadmium, lead, and zinc) was periodically applied. Metal accumulations in tissues of grasses -Panicum virgatum, Kentucky-31, and Bromus ciliatus, were investigated after 230d of growth and multiple runoff treatment events. After 183d of periodic runoff application, the concentrations of Zn, Cu, Pb and Cd with low and high loadings had the same trends in the plant tissues, Zn>Cu>Pb>Cd, following the trend of the input metal concentrations. The fates of input metals were 88-97% captured in soil media, 2.0-11.6% not captured by bioretention media, and 0.5-3.3% accumulated in plants. Compared to the metals retained by the soil, the percentages of input metals taken up by plants were relatively low due to the low plant biomass produced in this study. Greater biomass density would be required for the vegetation to have a valuable impact in prolonging the lifetime of a bioretention cell.

  2. Fate of Silver Nanoparticles in Lake Mesocosms

    Science.gov (United States)

    Furtado, Lindsay

    The fate of silver nanoparticles (AgNPs) in surface waters determines the ecological risk of this emerging contaminant. In this research, the fate of AgNPs in lake mesocosms was studied using both a continuous (i.e. drip) and one-time (i.e. plug) dosing regime. AgNPs were persistent in the tested lake environment as there was accumulation in the water column over time in drip mesocosms and slow dissipation from the water column (half life of 20 days) in plug mesocosms. In drip mesocosms, AgNPs were found to accumulate in the water column, periphtyon, and sediment according to loading rate; and, AgNP coating (PVP vs. CT) had no effect on agglomeration and dissolution based on filtration analysis. In plug mesocosms, cloud point extraction (CPE), single-particle-inductively coupled mass spectroscopy (spICP-MS), and asymmetrical flow field-flow fractionation (AF4-ICP-MS) confirmed the temporal dissolution of AgNPs into Ag+ over time; however, complexation is expected to reduce the toxicity of Ag + in natural waters.

  3. Fate of Fusarium Toxins during Brewing.

    Science.gov (United States)

    Habler, Katharina; Geissinger, Cajetan; Hofer, Katharina; Schüler, Jan; Moghari, Sarah; Hess, Michael; Gastl, Martina; Rychlik, Michael

    2017-01-11

    Some information is available about the fate of Fusarium toxins during the brewing process, but only little is known about the single processing steps in detail. In our study we produced beer from two different barley cultivars inoculated with three different Fusarium species, namely, Fusarium culmorum, Fusarium sporotrichioides, and Fusarium avenaceum, producing a wide range of mycotoxins such as type B trichothecenes, type A trichothecenes, and enniatins. By the use of multi-mycotoxin LC-MS/MS stable isotope dilution methods we were able to follow the fate of Fusarium toxins during the entire brewing process. In particular, the type B trichothecenes deoxynivalenol, 3-acetyldeoxynivalenol, and 15-acetyldeoxynivalenol showed similar behaviors. Between 35 and 52% of those toxins remained in the beer after filtration. The contents of the potentially hazardous deoxynivalenol-3-glucoside and the type A trichothecenes increased during mashing, but a rapid decrease of deoxynivalenol-3-glucoside content was found during the following steps of lautering and wort boiling. The concentration of enniatins greatly decreased with the discarding of spent grains or finally with the hot break. The results of our study show the retention of diverse Fusarium toxins during the brewing process and allow for assessing the food safety of beer regarding the monitored Fusarium mycotoxins.

  4. Glucocorticoid regulation of astrocytic fate and function.

    Directory of Open Access Journals (Sweden)

    Shuang Yu

    Full Text Available Glial loss in the hippocampus has been suggested as a factor in the pathogenesis of stress-related brain disorders that are characterized by dysregulated glucocorticoid (GC secretion. However, little is known about the regulation of astrocytic fate by GC. Here, we show that astrocytes derived from the rat hippocampus undergo growth inhibition and display moderate activation of caspase 3 after exposure to GC. Importantly, the latter event, observed both in situ and in primary astrocytic cultures is not followed by either early- or late-stage apoptosis, as monitored by stage I or stage II DNA fragmentation. Thus, unlike hippocampal granule neurons, astrocytes are resistant to GC-induced apoptosis; this resistance is due to lower production of reactive oxygen species (ROS and a greater buffering capacity against the cytotoxic actions of ROS. We also show that GC influence hippocampal cell fate by inducing the expression of astrocyte-derived growth factors implicated in the control of neural precursor cell proliferation. Together, our results suggest that GC instigate a hitherto unknown dialog between astrocytes and neural progenitors, adding a new facet to understanding how GC influence the cytoarchitecture of the hippocampus.

  5. Cell fate regulation in early mammalian development

    Science.gov (United States)

    Oron, Efrat; Ivanova, Natalia

    2012-08-01

    Preimplantation development in mammals encompasses a period from fertilization to implantation and results in formation of a blastocyst composed of three distinct cell lineages: epiblast, trophectoderm and primitive endoderm. The epiblast gives rise to the organism, while the trophectoderm and the primitive endoderm contribute to extraembryonic tissues that support embryo development after implantation. In many vertebrates, such as frog or fish, maternally supplied lineage determinants are partitioned within the egg. Cell cleavage that follows fertilization results in polarization of these factors between the individual blastomeres, which become restricted in their developmental fate. In contrast, the mouse oocyte and zygote lack clear polarity and, until the eight-cell stage, individual blastomeres retain the potential to form all lineages. How are cell lineages specified in the absence of a maternally supplied blueprint? This is a fundamental question in the field of developmental biology. The answer to this question lies in understanding the cell-cell interactions and gene networks involved in embryonic development prior to implantation and using this knowledge to create testable models of the developmental processes that govern cell fates. We provide an overview of classic and contemporary models of early lineage development in the mouse and discuss the emerging body of work that highlights similarities and differences between blastocyst development in the mouse and other mammalian species.

  6. CONFIGURATIONS OF THE ENCYCLOPEDIA AND THE MODEL READER IN A TEXTBOOK OF MISIONES, ARGENTINA / CONFIGURACIONES DE LA ENCICLOPEDIA Y EL LECTOR MODELO EN UN TEXTO ESCOLAR DE MISIONES, ARGENTINA

    Directory of Open Access Journals (Sweden)

    Froilán Fernández

    2013-07-01

    Full Text Available This paper attempts to analyze, from the conceptual categories of Encyclopedia and Model Reader raised by Umberto Eco, a fragment of the school handbook Misiones 4, text required reading during the last two decades in schools in the State of Misiones, Argentina. The hypothesis to guide our analysis consider that the text fragment -but also the entire textbook Misiones 4- reinforces and configures an encyclopedia "official" that promotes the historical continuity -forgetting conflicts and tensions- between the Jesuit province of 18th century and the Argentine state of 20th century, postulating, at the same, a Reader Model that adheres to a simplified pedagogical and religious local memory.

  7. Cell fate and cell differentiation status in the Arabidopsis root

    NARCIS (Netherlands)

    Scheres, B.J.G.; Berg, C. van den; Weisbeek, P.

    1998-01-01

    Post-embryonic development in plants is mainly achieved by its meristems. Within the Arabidopsis root meristem, both the fate and origin of its cells can be predicted with high accuracy. Mutants defective in the determination of root cell fates show that the corresponding genes are first required

  8. Cell fate determination in the Caenorhabditis elegans epidermal lineages

    NARCIS (Netherlands)

    Soete, G.A.J.

    2007-01-01

    The starting point for this work was to use the hypodermal seam of C. elegans as a model system to study cell fate determination. Even though the seam is a relatively simple developmental system, the mechanisms that control cell fate determination in the seam lineages are connected in a highly compl

  9. Analysis, fate and effects of the antibiotic sulfadiazine in soil.

    NARCIS (Netherlands)

    Schauss, K.; Focks, A.; Heuer, H.; Kotzerke, A.; Schmitt, H.; Thiele-Bruhn, S.; Smalla, K.; Wilke, B.M.; Matthies, M.

    2009-01-01

    This review summarizes current knowledge about the interplay between fate and effects of the antibiotic sulfadiazine in soil ecosystems. In applying manure from antibiotic-treated animals to arable soils, sulfadiazine can reach the environment, but fate and transformation processes and the consequen

  10. Spatially explicit fate modelling of nanomaterials in natural waters

    NARCIS (Netherlands)

    Quik, J.T.K.; Klein, de J.J.M.; Koelmans, A.A.

    2015-01-01

    Site specific exposure assessments for engineered nanoparticles (ENPs) require spatially explicit fate models, which however are not yet available. Here we present an ENP fate model (NanoDUFLOW) that links ENP specific process descriptions to a spatially explicit hydrological model. The link enables

  11. Cell fate determination in the Caenorhabditis elegans epidermal lineages

    NARCIS (Netherlands)

    Soete, G.A.J.

    2007-01-01

    The starting point for this work was to use the hypodermal seam of C. elegans as a model system to study cell fate determination. Even though the seam is a relatively simple developmental system, the mechanisms that control cell fate determination in the seam lineages are connected in a highly compl

  12. Analysis, fate and effects of the antibiotic sulfadiazine in soil.

    NARCIS (Netherlands)

    Schauss, K.; Focks, A.; Heuer, H.; Kotzerke, A.; Schmitt, H.|info:eu-repo/dai/nl/304831042; Thiele-Bruhn, S.; Smalla, K.; Wilke, B.M.; Matthies, M.

    2009-01-01

    This review summarizes current knowledge about the interplay between fate and effects of the antibiotic sulfadiazine in soil ecosystems. In applying manure from antibiotic-treated animals to arable soils, sulfadiazine can reach the environment, but fate and transformation processes and the

  13. Fate and Bioavailability of Engineered Nanoparticles in Soils: A Review

    NARCIS (Netherlands)

    Cornelis, G.; Hund-Rinke, K.; Kuhlbusch, T.; Brink, van den N.W.; Nickel, C.

    2014-01-01

    Interactions within natural soils have often been neglected when assessing fate and bioavailability of engineered nanomaterials (ENM) in soils. This review combines patchwise ENM research using natural soils with the much wider literature on ENM performed in standard tests or on the fate of colloids

  14. Asymmetric cell division during T cell development controls downstream fate

    Science.gov (United States)

    Pham, Kim; Shimoni, Raz; Charnley, Mirren; Ludford-Menting, Mandy J.; Hawkins, Edwin D.; Ramsbottom, Kelly; Oliaro, Jane; Izon, David; Ting, Stephen B.; Reynolds, Joseph; Lythe, Grant; Molina-Paris, Carmen; Melichar, Heather; Robey, Ellen; Humbert, Patrick O.; Gu, Min

    2015-01-01

    During mammalian T cell development, the requirement for expansion of many individual T cell clones, rather than merely expansion of the entire T cell population, suggests a possible role for asymmetric cell division (ACD). We show that ACD of developing T cells controls cell fate through differential inheritance of cell fate determinants Numb and α-Adaptin. ACD occurs specifically during the β-selection stage of T cell development, and subsequent divisions are predominantly symmetric. ACD is controlled by interaction with stromal cells and chemokine receptor signaling and uses a conserved network of polarity regulators. The disruption of polarity by deletion of the polarity regulator, Scribble, or the altered inheritance of fate determinants impacts subsequent fate decisions to influence the numbers of DN4 cells arising after the β-selection checkpoint. These findings indicate that ACD enables the thymic microenvironment to orchestrate fate decisions related to differentiation and self-renewal. PMID:26370500

  15. BasinBox: a generic multimedia fate model for predicting the fate of chemicals in river catchments

    NARCIS (Netherlands)

    Hollander, A; Huijbregts, M A J; Ragas, A M J; Meent, D van de

    2006-01-01

    Multimedia fate models have proven to be very useful tools in chemical risk assessment and management. This paper presents BasinBox, a newly developed steady-state generic multimedia fate model for evaluating risks of new and existing chemicals in river basins. The model concepts, as well as the int

  16. C. Linnaeus' ideas concerning retribution and fate

    Directory of Open Access Journals (Sweden)

    K. Rob. V. Wikman

    1967-02-01

    Full Text Available Linnæus' Nemesis divina has been interpreted in different ways. Crucial is its central problem: the ideas of fate and retribution, but these are, in turn, dependent on Linnæus' conception of God and nature and not least on his opinions concerning the unity and coherence of the natural and ethical order of the world. From whatever sources Linnæus may have derived his religious ideas and whatever changes they may have undergone, his religious attitude in face of the works of nature remained unshaken. But Linnæus' religion, as we find it fragmentarily in these literary sources, was entirely undogmatic, untheological and, from a Christian point of view, even heterodox. Partly, this was in accord with his belief in the necessary immanent coherence in the processes of nature and the concomitant idea of the righteous divine order of the world.

  17. Fate of pesticides during beer brewing.

    Science.gov (United States)

    Inoue, Tomonori; Nagatomi, Yasushi; Suga, Keiko; Uyama, Atsuo; Mochizuki, Naoki

    2011-04-27

    The fates of more than 300 pesticide residues were investigated in the course of beer brewing. Ground malt artificially contaminated with pesticides was brewed via steps such as mashing, boiling, and fermentation. Analytical samples were taken from wort, spent grain, and beer produced at certain key points in the brewing process. The samples were extracted and purified with the QuEChERS (Quick Easy Cheap Effective Rugged and Safe) method and were then analyzed by LC-MS/MS using a multiresidue method. In the results, a majority of pesticides showed a reduction in the unhopped wort and were adsorbed onto the spent grain after mashing. In addition, some pesticides diminished during the boiling and fermentation. This suggests that the reduction was caused mainly by adsorption, pyrolysis, and hydrolysis. After the entire process of brewing, the risks of contaminating beer with pesticides were reduced remarkably, and only a few pesticides remained without being removed or resolved.

  18. Fate of selected pharmaceuticals in river waters.

    Science.gov (United States)

    Calza, P; Medana, C; Padovano, E; Giancotti, V; Minero, C

    2013-04-01

    The aqueous environmental fate of two antibiotics, lincomycin and clarithromycin, and an antiepileptic drug, carbamazepine, was investigated by monitoring drugs decomposition and identifying intermediates in Po river water (North Italy). Initially, control experiments in the dark and under illumination were performed on river water spiked with drugs to simulate all possible transformation processes occurring in the aquatic system. Under illumination, these pharmaceuticals were degraded and transformed into numerous organic intermediate compounds. Several species were formed and characterised by analysing MS and MS(n) spectra and by comparison with parent molecule fragmentation pathways. River water was sampled at three sampling points in an urban area. The selected pharmaceuticals were detected in all samples. Eight transformation products identified in the laboratory simulation were found in natural river water from carbamazepine degradation, three from clarithromycin and two from lincomycin. Their transformation occurring in aquatic system mainly involved mono- and poly-hydroxylation followed by oxidation of the hydroxyl groups.

  19. Binary cell fate decisions and fate transformation in the Drosophila larval eye.

    Directory of Open Access Journals (Sweden)

    Abhishek Kumar Mishra

    Full Text Available The functionality of sensory neurons is defined by the expression of specific sensory receptor genes. During the development of the Drosophila larval eye, photoreceptor neurons (PRs make a binary choice to express either the blue-sensitive Rhodopsin 5 (Rh5 or the green-sensitive Rhodopsin 6 (Rh6. Later during metamorphosis, ecdysone signaling induces a cell fate and sensory receptor switch: Rh5-PRs are re-programmed to express Rh6 and become the eyelet, a small group of extraretinal PRs involved in circadian entrainment. However, the genetic and molecular mechanisms of how the binary cell fate decisions are made and switched remain poorly understood. We show that interplay of two transcription factors Senseless (Sens and Hazy control cell fate decisions, terminal differentiation of the larval eye and its transformation into eyelet. During initial differentiation, a pulse of Sens expression in primary precursors regulates their differentiation into Rh5-PRs and repression of an alternative Rh6-cell fate. Later, during the transformation of the larval eye into the adult eyelet, Sens serves as an anti-apoptotic factor in Rh5-PRs, which helps in promoting survival of Rh5-PRs during metamorphosis and is subsequently required for Rh6 expression. Comparably, during PR differentiation Hazy functions in initiation and maintenance of rhodopsin expression. Hazy represses Sens specifically in the Rh6-PRs, allowing them to die during metamorphosis. Our findings show that the same transcription factors regulate diverse aspects of larval and adult PR development at different stages and in a context-dependent manner.

  20. The Fate of Neutron Star Binary Mergers

    Science.gov (United States)

    Piro, Anthony L.; Giacomazzo, Bruno; Perna, Rosalba

    2017-08-01

    Following merger, a neutron star (NS) binary can produce roughly one of three different outcomes: (1) a stable NS, (2) a black hole (BH), or (3) a supramassive, rotationally supported NS, which then collapses to a BH following angular momentum losses. Which of these fates occur and in what proportion has important implications for the electromagnetic transient associated with the mergers and the expected gravitational wave (GW) signatures, which in turn depend on the high density equation of state (EOS). Here we combine relativistic calculations of NS masses using realistic EOSs with Monte Carlo population synthesis based on the mass distribution of NS binaries in our Galaxy to predict the distribution of fates expected. For many EOSs, a significant fraction of the remnants are NSs or supramassive NSs. This lends support to scenarios in which a quickly spinning, highly magnetized NS may be powering an electromagnetic transient. This also indicates that it will be important for future GW observatories to focus on high frequencies to study the post-merger GW emission. Even in cases where individual GW events are too low in signal to noise to study the post merger signature in detail, the statistics of how many mergers produce NSs versus BHs can be compared with our work to constrain the EOS. To match short gamma-ray-burst (SGRB) X-ray afterglow statistics, we find that the stiffest EOSs are ruled out. Furthermore, many popular EOSs require a significant fraction of ˜60%-70% of SGRBs to be from NS-BH mergers rather than just binary NSs.

  1. Biokinetics of zinc oxide nanoparticles: toxicokinetics, biological fates, and protein interaction

    Directory of Open Access Journals (Sweden)

    Choi SJ

    2014-12-01

    Full Text Available Soo-Jin Choi,1 Jin-Ho Choy2 1Department of Food Science and Technology, Seoul Women's University, 2Center for Intelligent Nano Bio Materials (CINBM, Department of Bioinspired Science and Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, South Korea Abstract: Biokinetic studies of zinc oxide (ZnO nanoparticles involve systematic and quantitative analyses of absorption, distribution, metabolism, and excretion in plasma and tissues of whole animals after exposure. A full understanding of the biokinetics provides basic information about nanoparticle entry into systemic circulation, target organs of accumulation and toxicity, and elimination time, which is important for predicting the long-term toxic potential of nanoparticles. Biokinetic behaviors can be dependent on physicochemical properties, dissolution property in biological fluids, and nanoparticle–protein interaction. Moreover, the determination of biological fates of ZnO nanoparticles in the systemic circulation and tissues is critical in interpreting biokinetic behaviors and predicting toxicity potential as well as mechanism. This review focuses on physicochemical factors affecting the biokinetics of ZnO nanoparticles, in concert with understanding bioavailable fates and their interaction with proteins. Keywords: ZnO nanoparticles, biokinetics, distribution, excretion, fate, interaction

  2. 简论词的语文义与百科义%A Brief Introduction to the Language Definitions and Significance of Encyclopedia of the Word

    Institute of Scientific and Technical Information of China (English)

    汤丽丽

    2011-01-01

    词语的释义可分为语文义、百科义两类。两者之间既有联系,又有区别,在一定条件下,还可以互相转化。区分这两种释义,对于词典编纂、语言规范、语文教学都有重要意义。%The explanation of the words can be divided into two categories, which are language definitions and significance of encyclopedia. Both connections and differences exist between the two kinds of definitions. Under certain conditions, they can be transformed into each other. Distinguish the differences between these two definitions plays an important role in lexicography, language specification and Chinese teaching.

  3. Understanding selection bias, time-lags and measurement bias in secondary data sources: Putting the Encyclopedia of Associations database in broader context.

    Science.gov (United States)

    Bevan, Shaun; Baumgartner, Frank R; Johnson, Erik W; McCarthy, John D

    2013-11-01

    Secondary data gathered for purposes other than research play an important role in the social sciences. A recent data release has made an important source of publicly available data on associational interests, the Encyclopedia of Associations (EA), readily accessible to scholars (www.policyagendas.org). In this paper we introduce these new data and systematically investigate issues of lag between events and subsequent reporting in the EA, as these have important but under-appreciated effects on time-series statistical models. We further analyze the accuracy and coverage of the database in numerous ways. Our study serves as a guide to potential users of this database, but we also reflect upon a number of issues that should concern all researchers who use secondary data such as newspaper records, IRS reports and FBI Uniform Crime Reports. Copyright © 2013 Elsevier Inc. All rights reserved.

  4. Review Article: The Saddest History Ever Written: On Randolph L. Braham’s "The Geographical Encyclopedia of the Holocaust in Hungary" (2013

    Directory of Open Access Journals (Sweden)

    Marguerite De Huszar Allen

    2015-01-01

    Full Text Available Only in 1989, after forty-five years of Soviet domination, could the Holocaust in Hungary begin to be discussed openly and honestly. One scholar in particular, the author – editor of this mammoth geographical encyclopedia, Randolph L. Braham, has devoted his life and career to uncovering the truth about what happened within the borders of Hungary and the annexed territories. Since 1961 he has written or edited, co-authored or co-edited more than fifty books on the Holocaust. The masterful two-volume Politics of Genocide: The Holocaust in Hungary (1994 appeared to be his definitive statement. But now, with a team of Hungarian Holocaust scholars and journalists, he uncovers, with maps and photos, how the Holocaust was implemented within each and every city, town, and village of every one of the forty-one counties in wartime Hungary.

  5. Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains.

    Science.gov (United States)

    Whitman, William B; Woyke, Tanja; Klenk, Hans-Peter; Zhou, Yuguang; Lilburn, Timothy G; Beck, Brian J; De Vos, Paul; Vandamme, Peter; Eisen, Jonathan A; Garrity, George; Hugenholtz, Philip; Kyrpides, Nikos C

    2015-01-01

    The Genomic Encyclopedia of Bacteria and Archaea (GEBA) project was launched by the JGI in 2007 as a pilot project to sequence about 250 bacterial and archaeal genomes of elevated phylogenetic diversity. Herein, we propose to extend this approach to type strains of prokaryotes associated with soil or plants and their close relatives as well as type strains from newly described species. Understanding the microbiology of soil and plants is critical to many DOE mission areas, such as biofuel production from biomass, biogeochemistry, and carbon cycling. We are also targeting type strains of novel species while they are being described. Since 2006, about 630 new species have been described per year, many of which are closely aligned to DOE areas of interest in soil, agriculture, degradation of pollutants, biofuel production, biogeochemical transformation, and biodiversity.

  6. Cell fate patterning during C. elegans vulval development

    OpenAIRE

    Hill, Russell J.; Sternberg, Paul W.

    1993-01-01

    Precursor cells of the vulva of the C. elegans hermaphrodite choose between two vulval cell fates (1° and 2°) and a non-vulval epidermal fate (3°) in response to three intercellular signals. An inductive signal produced by the anchor cell induces the vulval precursors to assume the 1° and 2° vulval fates. This inductive signal is an EGF-like growth factor encoded by the gene lin-3. An inhibitory signal mediated by lin-15, and which may originate from the surrounding epidermis, prevents the vu...

  7. EMT and MET as paradigms for cell fate switching

    Institute of Scientific and Technical Information of China (English)

    Jiekai Chen; Qingkai Han; Duanqing Pei

    2012-01-01

    Cell fate determination is a major unsolved problem in cell and developmental biology,The discovery of reprogramming by pluripotent factors offers a rational system to investigate the molecular mechanisms associated with cell fate decisions.The idea that reprogramming of fibroblasts starts with a mesenchymal-epithelial transition (MET) suggests that the process is perhaps a reversal of epithelial to mesenchymal transition (EMT) found frequently during early embryogenesis,As such,we believe that investigations into MET-EMT may yield detailed molecular insights into cell fate decisions,not only for the switching between epithelial and mesenchymal cells,but also other cell types.

  8. Probing kinematics and fate of the Universe with linearly time-varying deceleration parameter

    OpenAIRE

    Dereli, Tekin; Akarsu, Özgür; Kumar, Suresh; Xu, Lixin

    2013-01-01

    arXiv:1305.5190v3 [gr-qc] 4 Feb 2014 Probing kinematics and fate of the Universe with linearly time-varying deceleration parameter Özgür Akarsua, Tekin Derelia, Suresh Kumarb, Lixin Xuc a Department of Physics, Koç University, 34450 Sarıyer, İstanbul, Turkey. b Department of Mathematics, BITS Pilani, Pilani Campus, Rajasthan-333031, India. c Institute of Theoretical Physics, Dalian University of Technology, Dalian, 116024, P. R. China. E-Mail: , tdereli@k...

  9. [The fate of Polish psychiatry under German occupation during World War II].

    Science.gov (United States)

    Leidinger, Friedrich

    2014-07-01

    Polish psychiatry was since its origin deeply influenced by German (Austrian) and Russian psychiatry. After the German assault Polish psychiatric patients were the first victims of mass executions, and the first to be killed by new developed "gassing" technology. Especially cruel was the fate of Jewish patients. German "health policy" in occupied Poland was only "starvation or shooting". Some hospitals continued working under German rule and received patients from Germany in the framework of Nazi-"euthanasia". The article describes the mostly ignored facts of the close link between the medical programme of annihilation of the "unfit" and the genocide of Poles and Jews. © Georg Thieme Verlag KG Stuttgart · New York.

  10. Noninvasive Assessment of Cell Fate and Biology in Transplanted Mesenchymal Stem Cells.

    Science.gov (United States)

    Franchi, Federico; Rodriguez-Porcel, Martin

    2017-01-01

    Recently, molecular imaging has become a conditio sine qua non for cell-based regenerative medicine. Developments in molecular imaging techniques, such as reporter gene technology, have increasingly enabled the noninvasive assessment of the fate and biology of cells after cardiovascular applications. In this context, bioluminescence imaging is the most commonly used imaging modality in small animal models of preclinical studies. Here, we present a detailed protocol of a reporter gene imaging approach for monitoring the viability and biology of Mesenchymal Stem Cells transplanted in a mouse model of myocardial ischemia reperfusion injury.

  11. Modelling the fate of organic micropollutants in stormwater ponds

    DEFF Research Database (Denmark)

    Vezzaro, Luca; Eriksson, Eva; Ledin, Anna;

    2011-01-01

    substance inherent properties to calculate MP fate but differ in their ability to represent the small physical scale and high temporal variability of stormwater treatment systems. Therefore the three models generate different results. A Global Sensitivity Analysis (GSA) highlighted that settling....../resuspension of particulate matter was themost sensitive process for the dynamic model. The uncertainty of the estimated MP fluxes can be reduced by calibrating the dynamic model against total suspended solids data. This reduction in uncertainty was more significant for the substances with strong tendency to sorb, i...... models. The fate of four different MP in a stormwater retention pond was simulated by applying two steady-state multimedia fate models (EPI Suite and SimpleBox) commonly applied in chemical risk assessment and a dynamic multimedia fate model (Stormwater Treatment Unit Model for Micro Pollutants — STUMP...

  12. Investigating the Toxicity and Environmental Fate of Graphene Nanomaterials

    Science.gov (United States)

    The Hersam Laboratory at Northwestern University works with the Center for Environmental Implications of Nanotechnology and the United States Environmental Protection Agency to study the toxicity and environmental fate of emergent nanomaterials, specifically carbon-based nanomate...

  13. Hydrologic modeling of pathogen fate and transport.

    Science.gov (United States)

    Dorner, Sarah M; Anderson, William B; Slawson, Robin M; Kouwen, Nicholas; Huck, Peter M

    2006-08-01

    A watershed-scale fate and transport model has been developed for Escherichia coli and several waterborne pathogens: Cryptosporidiumspp., Giardiaspp., Campylobacter spp, and E. coli O157:H7. The objectives were to determine the primary sources of pathogenic contamination in a watershed used for drinking water supply and to gain a greater understanding of the factors that most influence their survival and transport. To predict the levels of indicator bacteria and pathogens in surface water, an existing hydrologic model, WATFLOOD, was augmented for pathogen transport and tested on a watershed in Southwestern Ontario, Canada. The pathogen model considered transport as a result of overland flow, subsurface flow to tile drainage systems, and in-stream routing. The model predicted that most microorganisms entering the stream from land-based sources enter the stream from tile drainage systems rather than overland transport. Although the model predicted overland transport to be rare, when it occurred, it corresponded to the highest observed and modeled microbial concentrations. Furthermore, rapid increases in measured E. coli concentrations during storm events suggested that the resuspension of microorganisms from stream sediments may be of equal or greater importance than land-based sources of pathogens.

  14. The Fate of Unstable Gauge Flux Compactifications

    CERN Document Server

    Burgess, C P; Zavala, I

    2009-01-01

    Fluxes are widely used to stabilise extra dimensions, but if they arise within a non-abelian gauge sector they are often unstable. We seek the fate of this instability, focussing on the simplest examples: sphere-monopole compactifications in six dimensions. Without gravity most non-abelian monopoles are unstable, decaying into the unique stable monopole in the same topological class. We show that the same is true in Einstein-YM systems, with the geometry adjusting accordingly: a Mink(d)xS2 geometry supported by an unstable monopole relaxes to an AdS(d)xS2. For 6D supergravity, the dilaton obstructs this simple evolution, acquiring a gradient and thus breaking some of the spacetime symmetries. We argue that it is the 4D symmetries that break, and examine several endpoint candidates. Oxidising the supergravity system into a higher-dimensional Einstein-YM monopole, we use the latter to guide us to the corresponding endpoint. The result is a singular Kasner-like geometry conformal to Mink(4)xS2. The solution has ...

  15. Zinc fate in animal husbandry systems.

    Science.gov (United States)

    Romeo, A; Vacchina, V; Legros, S; Doelsch, E

    2014-11-01

    Zinc (Zn) is considered in animal production systems as both an essential nutrient and a possible pollutant. While it is generally supplemented at low levels in animal diets, with less than 200 mg kg(-1) in complete feeds, it is under scrutiny due to potential accumulation in the environment. This explains why international regulations limit maximum supplementation levels in animal feeds in a stricter way. This article gives an overview of the current knowledge on the fate of zinc in animal production systems, from animal diets to animal wastes. Some analytical methods can be used for the quantification and qualification of Zn chemical forms: X-ray crystallography, electrospray tandem mass spectrometry, separation techniques, hyphenated techniques… Analysis of chelated forms issued from complex matrices, like hydrolysed proteins, remains difficult, and the speciation of Zn in diluted carriers (premix and feed) is a challenge. Our understanding of Zn absorption has made progress with recent research on ZnT/Zip families and metallothioneins. However, fine-tuned approaches towards the nutritional and metabolic interactions for Zn supplementation in farm conditions still require further studies. The speciation of zinc in pig manure and poultry litter has been a priority as monogastric animals are usually raised under intensive conditions and fed with high quantities of trace minerals, leading to high animal density and elevated quantities of zinc from animal wastes.

  16. The fate of Earth’s ocean

    Directory of Open Access Journals (Sweden)

    C. Bounama

    2001-01-01

    Full Text Available Questions of how water arrived on the Earth’s surface, how much water is contained in the Earth system as a whole, and how much water will be available in the future in the surface reservoirs are of central importance to our understanding of the Earth. To answer the question about the fate of the Earth’s ocean, one has to study the global water cycle under conditions of internal and external forcing processes. Modern estimates suggest that the transport of water to the surface is five times smaller than water movement to the mantle, so that the Earth will lose all its sea-water in one billion years from now. This straightforward extrapolation of subduction-zone fluxes into the future seems doubtful. Using a geophysical modelling approach it was found that only 27% of the modern ocean will be subducted in one billion years. Internal feedbacks will not be the cause of the ocean drying out. Instead, the drying up of surface reservoirs in the future will be due to the increase in temperature caused by a maturing Sun connected to hydrogen escape to outer space. Keywords: Surface water reservoir, water fluxes, regassing, degassing, global water cycle

  17. Evolution and fate of very massive stars

    CERN Document Server

    Yusof, Norhasliza; Meynet, Georges; Crowther, Paul A; Ekstrom, Sylvia; Frischknecht, Urs; Georgy, Cyril; Kassim, Hasan Abu; Schnurr, Olivier; 10.1093/mnras/stt794

    2013-01-01

    There is observational evidence that supports the existence of Very Massive Stars in the local universe. First, very massive stars (Mini<=320 M) have been observed in the Large Magellanic Cloud . Second, there are observed SNe that bear the characteristics of Pair Creation Supernovae which have very massive stars as progenitors. The most promising candidate to date is SN2007bi. In order to investigate the evolution and fate of nearby very massive stars, we calculated a new grid of models for such objects, for solar, LMC and SMC metallicities, which covers the initial mass range from 120 to 500M. Both rotating and non-rotating models were calculated using the Geneva stellar evolution code and evolved until at least the end of helium burning and for most models until oxygen burning. Since very massive stars have very large convective cores during the Main-Sequence phase, their evolution is not so much affected by rotational mixing, but more by mass loss through stellar winds. Their evolution is never far fro...

  18. An illusion of control modulates the reluctance to tempt fate

    Directory of Open Access Journals (Sweden)

    Chloe L. Swirsky

    2011-10-01

    Full Text Available The tempting fate effect is that the probability of a fateful outcome is deemed higher following an action that ``tempts'' the outcome than in the absence of such an action. In this paper we evaluate the hypothesis that the effect is due to an illusion of control induced by a causal framing of the situation. Causal frames require that the action make a difference to an outcome and that the action precedes the outcome. If an illusion of control modulates the reluctance to tempt fate, then actions that make a difference to well-being and that occur prior to the outcome should tempt fate most strongly. In Experiments 1--3 we varied whether the action makes a difference and the temporal order of action and outcome. In Experiment 4 we tested whether an action can tempt fate if all outcomes are negative. The results of all four experiments supported our hypothesis that the tempting fate effect depends on a causal construal that gives rise to a false sense of control.

  19. Genetic fate mapping using site-specific recombinases.

    Science.gov (United States)

    Legué, Emilie; Joyner, Alexandra L

    2010-01-01

    Understanding how cells are assembled in three dimensions to generate an organ, or a whole organism, is a pivotal question in developmental biology. Similarly, it is critical to understand how adult stem cells integrate into an existing organ during regeneration or in response to injury. Key to discovering the answers to these questions is being able to study the various behaviors of distinct cell types during development or regeneration. Fate mapping techniques are fundamental to studying cell behaviors such as proliferation, movement, and lineage segregation, as the techniques allow precursor cells to be marked and their descendants followed and characterized over time. The generation of transgenic mice, combined with the use of site-specific recombinases (SSR) in the mouse genome, has provided a means to develop powerful genetic fate mapping approaches. A key advantage of genetic fate mapping is that it allows cells to be genetically marked, and therefore the mark is transmitted to all the descendants of the initially marked cells. By making modifications to the SSRs that render their enzymatic activity inducible, and the development of an assortment of reporter alleles for marking cells, increasingly sophisticated genetic fate mapping studies can be performed. In this chapter, we review the four main genetic fate mapping methods that utilize intrachromosomal recombination to mark cells (cumulative, inducible, clonal, and intersectional) and one interchromosomal method, the tools required to carry out each approach, and the practical considerations that have to be taken into account before embarking on each type of genetic fate mapping study.

  20. Essentials of recombinase-based genetic fate mapping in mice.

    Science.gov (United States)

    Jensen, Patricia; Dymecki, Susan M

    2014-01-01

    Fate maps, by defining the relationship between embryonic tissue organization and postnatal tissue structure, are one of the most important tools on hand to developmental biologists. In the past, generating such maps in mice was hindered by their in utero development limiting the physical access required for traditional methods involving tracer injection or cell transplantation. No longer is physical access a requirement. Innovations over the past decade have led to genetic techniques that offer means to "deliver" cell lineage tracers noninvasively. Such "genetic fate mapping" approaches employ transgenic strategies to express genetically encoded site-specific recombinases in a cell type-specific manner to switch on expression of a cell-heritable reporter transgene as lineage tracer. The behaviors and fate of marked cells and their progeny can then be explored and their contributions to different tissues examined. Here, we review the basic concepts of genetic fate mapping and consider the strengths and limitations for their application. We also explore two refinements of this approach that lend improved spatial and temporal resolution: (1) Intersectional and subtractive genetic fate mapping and (2) Genetic inducible fate mapping.

  1. The history of 'Social Technology', 1898-1930

    NARCIS (Netherlands)

    Derksen, Maarten; Wierenga, Tjardie

    2013-01-01

    Since the term was first coined, in the late nineteenth century, 'social technology' has had a mixed fate. Whereas 'technology' has become one of the keywords of the twentieth century, 'social technology' never quite seemed to settle in the vocabulary of social theory. In this article, we focus on t

  2. The history of 'Social Technology', 1898-1930

    NARCIS (Netherlands)

    Derksen, Maarten; Wierenga, Tjardie

    2013-01-01

    Since the term was first coined, in the late nineteenth century, 'social technology' has had a mixed fate. Whereas 'technology' has become one of the keywords of the twentieth century, 'social technology' never quite seemed to settle in the vocabulary of social theory. In this article, we focus on t

  3. The Fate of Merging Neutron Stars

    Science.gov (United States)

    Kohler, Susanna

    2017-08-01

    state. They then combined this information with Monte Carlo simulations based on the mass distribution of neutron-star binaries in our galaxy. From these simulations, Piro and collaborators could predict the distribution of fates expected for merging neutron-star binaries, given different equations of state.The authors found that the fate of the merger could vary greatly depending on the equation of state you assume. Intriguingly, all equations of state resulted in a surprisingly high fraction of systems that merged to form a neutron star or a supramassive neutron star in fact, four out of the five equations of state predicted that 80100% of systems would result in a neutron star or a supermassive neutron star.Lessons from ObservationsThe frequency bands covered by various current and planned gravitational wave observatories. Advanced LIGO has the right frequency coverage to be able to explore a neutron-star remnant if the signal is loud enough. [Christopher Moore, Robert Cole and Christopher Berry]These results have important implications for our future observations. The high predicted fraction of neutron stars resulting from these mergers tells us that its especially important for gravitational-wave observatories to probe 14 kHz emission. This frequency range will enable us to study the post-merger neutron-star or supramassive-neutron-star remnants.Even if we cant observe the remnants behavior after it forms, we can still compare the distribution of remnants that we observe in the future to the predictions made by Piro and collaborators. This will potentially allow us to constrain the neutron-star equation of state, revealing the physics of neutron-star interiors even without direct observations.CitationAnthony L. Piro et al 2017 ApJL 844 L19. doi:10.3847/2041-8213/aa7f2f

  4. Fate of manufactured nanoparticles in environmental systems

    Science.gov (United States)

    Gelabert, A.; Sivry, Y.; Siron, V.; Akrout, A.; Ferrari, R.; Juillot, F.; Menguy, N.; Benedetti, M. F.

    2009-12-01

    Because of their specific physico-chemical properties, engineered nanoparticles (NPs) have become largely widespread in numerous industrial fields such as biomedicine, cosmetics, and material sciences. However, their growing use could possibly result in the release of various NPs amounts in environmental settings. Thus, an accurate understanding of their behaviour in natural systems is required, and of first importance is an estimation of their persistence and/or physico-chemical modifications since they can greatly alter their fate and bioavailability in the biogeosphere. The present study focuses on dissolution rate estimations for commercial NPs ZnO and TiO2 in natural waters (i.e. filtered Seine river water and seawater). Both NPs were used uncoated and coated with an organic polymer. Native NPs size and shape were investigated using TEM, and appeared as 20-50 nm spheroids, with an associated specific surface area of 37.5 and 57.6 m2/g for ZnO and TiO2, respectivelly. NPs dissolution rates were determined using both ultrafiltration (UF) and Donnan Membrane Techniques (DMT, [1]). The latter method allows a direct in-situ measurement of the free metal ion concentration only (here Zn2+), while the UF membrane small nominal pore size (approx. 2 nm) results in the separation of small inorganic complexes in addition to free metal ions. After a fast dissolution step reaching 1% of total zinc within the first hour for uncoated ZnO NPs in Seine water, precipitation of new mineral phases occurred with the formation of smithonite and hydrozincite as observed by XRD and TEM and confirmed by thermodynamic calculations (Visual Minteq). Interestingly, the behaviour of the coated ZnO NPs is slightly different since the initial dissolution step takes place during the first 72 hours, to reach up to 10% of the total zinc in our system. However, despite this difference in dissolution kinetics, both systems evolve similarly after 3 days, and they reach a steady state after

  5. Geochemical fate of arsenic in swine litter

    Science.gov (United States)

    Quazi, S.; Makris, K.; Sarkar, D.; Datta, R.; Punamiya, P.

    2007-12-01

    Swine diet is often supplemented by organoarsenicals, such as roxarsone to treat diseases and to promote growth. Recent data reported roxarsone degradation under anaerobic conditions in poultry litter, but no such data exist for swine wastes typically stored in unprotected lagoons in concentrated animal feeding operations (CAFOs). However, serious environmental health risk may arise upon significant arsenic (As) release into solution. The problem may be exacerbated under certain environmental conditions where organoarsenicals, such as roxarsone transform into the more toxic inorganic As, posing serious health risk to the surrounding ecosystem. The objective of this study were to analyze swine wastes collected from 19 randomly selected CAFOs in the USA for As concentrations, and to determine the geochemical fate of As in the swine waste suspensions. Swine wastes were analyzed for total-recoverable, total soluble, and water-extractable As, which were measured by ICP-MS. Speciation of As was performed following a well-established hyphenated technique using HPLC- ICPMS. Swine waste suspensions differed in solids contents; thus, the particulate matters with varying As concentrations were spiked with roxarsone and incubated under dark/light and aerobic/anaerobic conditions. Findings show the prevalence of inorganic As [As(V)] in swine waste suspension solutions. Roxarsone underwent degradation to both organoarsenicals, such as p-ASA, as well as inorganic arsenate and to a number of unidentified metabolites. Roxarsone degradation kinetics was influenced by the solids content and the air conditions (anaerobic/aerobic) of the swine waste suspensions. Maximum degradation rates were observed under anaerobic conditions, in suspensions which were low in solids content. Roxarsone degradation was primarily microbially-mediated, but in certain cases abiotic degradation was also observed, which were significantly slower.

  6. Research on the fates of drilling wastes

    Energy Technology Data Exchange (ETDEWEB)

    Munschenheim, D. K. [Department of Fisheries and Oceans, Dartmouth, NS (Canada). Bedford Inst. of Oceanography

    2000-07-01

    Dispersal characteristics and fates of fine particulate drilling wastes were studied in the Cohasset and Panuke oilfields lying 45 km west of Sable Island in 38 m of water. A second study was carried out at the Hibernia field in 1995 prior to the emplacement of the Hibernia platform. In the Cohasset and Panuke study the wells were relatively shallow and drilling operations were done with a minimum of barite. The initial trial comparing samples from within the discharge plume with those taken from clear water revealed that drilling waste fines accumulate in the benthic boundary layer. Subsequent studies at Copan delineated the extent of drilling wastes coverage on the seabed, showing flocculation of the waste particles, with subsequent increase in their settling rate. There was also evidence of an increase in water column turbidity with increasing proximity to the platform. In the case of Hibernia drilling wastes were detected only in the upper water column. Subsequent information revealed that this was due to the fact that at the time of sampling silica-based drilling mud, formulated with fresh water, was used. In 1998 Hibernia switched to synthetic muds. Since that time, no drilling mud waste was detected in the upper water column and only slight amounts in the benthic boundary layer. The explanation lies in the differences in discharge practices, such as for example pre-dilution with sea water. Overall, the results confirm the suitability of particle size analysis for the detection of particulate drilling wastes on energetic offshore banks. The technique also confirms the role of flocculation in retarding the dispersion of fine particles through increasing the settling rate. 4 refs., 6 figs.

  7. Genetic Circuit Architectures Underlying Cell Fate Choices for Immunity

    Science.gov (United States)

    Dinner, Aaron

    2009-03-01

    Antigen stimulated B cells follow an unusual developmental trajectory that transiently passes through a germinal center state, which promotes receptor affinity maturation and immunoglobulin class switching, before terminally differentiating into antibody secreting plasma cells. It was found that graded expression of the transcription factor IRF-4 regulates cell fate, but the relationship between antigen receptor signaling, the network of interactions with IRF-4, and cell fate was not known. This talk describes models that link ligand-receptor avidity with cell fate. The models have been validated experimentally by directly varying the levels and kinetics of IRF-4 accumulation. Furthermore, signaling through the antigen receptor is demonstrated to control the expression of IRF-4 and in turn the frequency of B cells that undergo class switching before differentiating into plasma cells. These findings provide an explanation for experiments that measure B cell numbers in transgenic mice. The architecture of our regulatory circuit provides a general mechanism for quantitative variations in a signal to be translated into a binary cell-fate choice involving transient expression of one of the two developmental fates. In collaboration with Aryeh Warmflash, Ying Li, Roger Sciammas, and Harinder Singh, The University of Chicago.

  8. Control of stem cell fate by engineering their micro andnanoenvironment

    Institute of Scientific and Technical Information of China (English)

    Michelle F Griffin; Peter E Butler; Alexander M Seifalian; Deepak M Kalaskar

    2015-01-01

    Stem cells are capable of long-term self-renewal anddifferentiation into specialised cell types, making theman ideal candidate for a cell source for regenerativemedicine. The control of stem cell fate has become amajor area of interest in the field of regenerative medicineand therapeutic intervention. Conventional methodsof chemically inducing stem cells into specific lineagesis being challenged by the advances in biomaterialtechnology, with evidence highlighting that materialproperties are capable of driving stem cell fate. Materialsare being designed to mimic the clues stem cells receivein their in vivo stem cell niche including topographicaland chemical instructions. Nanotopographical clues thatmimic the extracellular matrix (ECM) in vivo have shownto regulate stem cell differentiation. The delivery of ECMcomponents on biomaterials in the form of short peptidessequences has also proved successful in directing stem celllineage. Growth factors responsible for controlling stemcell fate in vivo have also been delivered via biomaterialsto provide clues to determine stem cell differentiation. Analternative approach to guide stem cells fate is to providegenetic clues including delivering DNA plasmids andsmall interfering RNAs via scaffolds. This review, aims toprovide an overview of the topographical, chemical andmolecular clues that biomaterials can provide to guidestem cell fate. The promising features and challenges ofsuch approaches will be highlighted, to provide directionsfor future advancements in this exciting area of stem celltranslation for regenerative medicine.

  9. Grass meristems II: inflorescence architecture, flower development and meristem fate.

    Science.gov (United States)

    Tanaka, Wakana; Pautler, Michael; Jackson, David; Hirano, Hiro-Yuki

    2013-03-01

    Plant development depends on the activity of various types of meristems that generate organs such as leaves and floral organs throughout the life cycle. Grass species produce complex inflorescences and unique flowers. The grass inflorescence is composed of different types of branches, including a specialized branch called a spikelet. The spikelet is a special unit of the inflorescence and forms one to several florets, depending on the species. In the floret, floral organs such as perianth organs, carpels and stamens are formed. In Arabidopsis, because the inflorescence meristem (IM) forms the floral meristems (FMs) directly on its flanks, the change of meristem fate is relatively simple. In contrast, in grasses, different types of meristem, such as the IM, the branch meristem (BM), the spikelet pair meristem (SPM) in some grasses, the spikelet meristem (SM) and the FM, are responsible for the elaboration of their complex inflorescences and flowers. Therefore, sequential changes of meristem fate are required, and a number of genes involved in the specification of the fate of each meristem have been identified. In this review, we focus on the following issues concerning the fate of the reproductive meristems in two grass species, maize (Zea mays) and rice (Oryza sativa): (i) meristem regulation during inflorescence development; (ii) specification and fate change of the BM and the SM; (iii) determinacy of the FM; and (iv) communication between the meristem and lateral organs.

  10. Fate of Organic Carbon Deposited in Reservoirs

    Science.gov (United States)

    Huntington, T. G.; Rhoton, F. E.; Bennett, S. J.; Hudnall, W. H.

    2002-05-01

    , sediment texture, and mineralogy, allows estimation of the autochthonous fraction. These sediment properties evaluated at different positions in the reservoir relative to inlet points can also be used to understand the fate of the SOC. Points furthest from the reservoir inlet should have higher fractions of finer textured sediments and more anoxic conditions. Sediments deposited closer to the inlet points experience periodic draining because of fluctuating water levels in the reservoir. These differences suggest that SOC is likely to be more highly conserved at positions furthest from the inlet points.

  11. Fate of Organic Micropollutants during Hydrothermal Carbonization

    Science.gov (United States)

    Weiner, B.; Baskyr, I.; Pörschmann, J.; Kopinke, F.-D.

    2012-04-01

    contaminated biomass. Chlorinated aromatic compounds are not fully degraded during HTC. Therefore, the addition of catalysts and reagents for a possible reduction has been studied. Zero-valent environmentally acceptable metals, such as Fe or Si, are presented as potential additives for the dechlorination of chloronaphthalene as a representative of chloroaromatics. Furthermore, when using municipal household waste, such as the 'organic' bin, or gardening greens as biomass educts, these materials often contain traces of synthetic plastics, which can lead to problems during waste incineration. Initial studies on the fate of synthetic polymers will also be presented.

  12. The final fate of planetary systems

    Science.gov (United States)

    Gaensicke, Boris

    2015-12-01

    The discovery of the first extra-solar planet around a main-sequence star in 1995 has changed the way we think about the Universe: our solar system is not unique. Twenty years later, we know that planetary systems are ubiquitous, orbit stars spanning a wide range in mass, and form in an astonishing variety of architectures. Yet, one fascinating aspect of planetary systems has received relatively little attention so far: their ultimate fate.Most planet hosts will eventually evolve into white dwarfs, Earth-sized stellar embers, and the outer parts of their planetary systems (in the solar system, Mars and beyond) can survive largely intact for billions of years. While scattered and tidally disrupted planetesimals are directly detected at a small number of white dwarfs in the form infrared excess, the most powerful probe for detecting evolved planetary systems is metal pollution of the otherwise pristine H/He atmospheres.I will present the results of a multi-cycle HST survey that has obtained COS observations of 136 white dwarfs. These ultraviolet spectra are exquisitely sensitive to the presence of metals contaminating the white atmosphere. Our sophisticated model atmosphere analysis demonstrates that at least 27% of all targets are currently accreting planetary debris, and an additional 29% have very likely done so in the past. These numbers suggest that planet formation around A-stars (the dominant progenitors of today's white dwarf population) is similarly efficient as around FGK stars.In addition to post-main sequence planetary system demographics, spectroscopy of the debris-polluted white dwarf atmospheres provides a direct window into the bulk composition of exo-planetesimals, analogous to the way we use of meteorites to determine solar-system abundances. Our ultraviolet spectroscopy is particularly sensitive to the detection of Si, a dominant rock-forming species, and we identify up to ten additional volatile and refractory elements in the most strongly

  13. Environmental fate data base (ENVIROFATE): environmental fate data (DATALOG), June 1988. Data file

    Energy Technology Data Exchange (ETDEWEB)

    Boethling, R.

    1988-06-01

    DATALOG is a bibliographic pointer file of environmental fate data and each record contains a chemical CAS registry number (9 bytes), one of 18 data types (9 bytes), and a reference number (6 bytes) to the full citation in the XREF file. The data types identify physical properties, degradation and transport studies, and food, occupational and ambient monitoring data. The file should be used with CASLST (in order to link the full reference citation). A list of possible data types and their abbreviations are: Adsorption (ADSORP), Bioconcentration (BIOCON), Biodegradation (BIODEG), Dissociation constant (DISS CON), Ecosystem (ECOS), Effluent concentrations (EFFL), Evaporation from water (EVAP), Food and crop concentrations (FOOD), Field studies (FIELD), Henry's Law constant (HENRY CON), Hydrolysis (HYDROL), Monitoring (MONIT), Occupational concentrations (OCCUP), Octanol/water partition coefficient (O/W PART), Photoxidation (PHOTOOXID), UV Spectra (UV), Vapor pressure (VP) and Water solubility (WATER SOL).

  14. Semantic similarity computation of Baidu encyclopedia entries based on SimRank%基于 SimRank 的百度百科词条语义相似度计算

    Institute of Scientific and Technical Information of China (English)

    尹坤; 尹红风; 杨燕; 贾真

    2014-01-01

    The measurement of the semantic similarity using semi-structured data on Baidu encyclopedia was proposed. The encyclopedia entries and related entries were considered as two nodes of a directed graph, of which there was a link between two nodes.Then SimRank algorithm was used to calculate the semantic similarity of encyclopedia entries.Ex-perimental results showed that the proposed measure significantly outperformed the traditional similarity measures, and might accurately reflect the semantic relationship between words.%提出一种利用百度百科半结构化数据自动获取词语相似度的方法,该方法将百科词条与其相关词条看做有向图的两个节点,且两节点相互之间存在着链接关系,然后利用 SimRank 算法计算百科词条语义相似度。实验表明,该方法优于传统的词语语义相似度测量,能准确地反映词语之间的语义关系。

  15. Cell fate control in the developing central nervous system

    Energy Technology Data Exchange (ETDEWEB)

    Guérout, Nicolas; Li, Xiaofei; Barnabé-Heider, Fanie, E-mail: Fanie.Barnabe-Heider@ki.se

    2014-02-01

    The principal neural cell types forming the mature central nervous system (CNS) are now understood to be diverse. This cellular subtype diversity originates to a large extent from the specification of the earlier proliferating progenitor populations during development. Here, we review the processes governing the differentiation of a common neuroepithelial cell progenitor pool into mature neurons, astrocytes, oligodendrocytes, ependymal cells and adult stem cells. We focus on studies performed in mice and involving two distinct CNS structures: the spinal cord and the cerebral cortex. Understanding the origin, specification and developmental regulators of neural cells will ultimately impact comprehension and treatments of neurological disorders and diseases. - Highlights: • Similar mechanisms regulate cell fate in different CNS cell types and structures. • Cell fate regulators operate in a spatial–temporal manner. • Different neural cell types rely on the generation of a diversity of progenitor cells. • Cell fate decision is dictated by the integration of intrinsic and extrinsic signals.

  16. Epigenetic memory and cell fate reprogramming in plants.

    Science.gov (United States)

    Birnbaum, Kenneth D; Roudier, François

    2017-02-01

    Plants have a high intrinsic capacity to regenerate from adult tissues, with the ability to reprogram adult cell fates. In contrast, epigenetic mechanisms have the potential to stabilize cell identity and maintain tissue organization. The question is whether epigenetic memory creates a barrier to reprogramming that needs to be erased or circumvented in plant regeneration. Early evidence suggests that, while chromatin dynamics impact gene expression in the meristem, a lasting constraint on cell fate is not established until late stages of plant cell differentiation. It is not yet clear whether the plasticity of plant cells arises from the ability of cells to erase identity memory or to deploy cells that may exhibit cellular specialization but still lack an epigenetic restriction on cell fate alteration.

  17. Towards a statistical mechanics of cell fate decisions.

    Science.gov (United States)

    Garcia-Ojalvo, Jordi; Martinez Arias, Alfonso

    2012-12-01

    The spatiotemporal organization of a developing organism requires carefully orchestrated sequences of cellular differentiation events. These events are triggered by decisions made by individual cells about their fate, which are in turn controlled by gene and protein regulation processes. While these cell fate decisions are subject to stochasticity and are not reproducible at the single-cell level, they result in highly consistent, almost deterministic patterns at the level of the whole cell population. The question of how this macroscopic order arises from a disordered microscopic behaviour is still outstanding, and is reminiscent of problems in physical systems that are readily addressed by statistical mechanics. Here we review recent studies that are beginning to provide the data needed to address this question and discuss conceptual ideas that might be used in a theoretical understanding of cell fate decision processes, emphasizing the challenges that biology poses to the application of statistical mechanics approaches to developmental biology.

  18. Cell fate determination by ubiquitin-dependent regulation of translation

    Science.gov (United States)

    Werner, Achim; Iwasaki, Shintaro; McGourty, Colleen; Medina-Ruiz, Sofia; Teerikorpi, Nia; Fedrigo, Indro; Ingolia, Nicholas T.; Rape, Michael

    2015-01-01

    Metazoan development depends on accurate execution of differentiation programs that allow pluripotent stem cells to adopt specific fates 1. Differentiation requires changes to chromatin architecture and transcriptional networks, yet whether other regulatory events support cell fate determination is less well understood. Here, we have identified the vertebrate-specific ubiquitin ligase CUL3KBTBD8 as an essential regulator of neural crest specification. CUL3KBTBD8 monoubiquitylates NOLC1 and its paralog TCOF1, whose mutation underlies the neurocristopathy Treacher Collins Syndrome 2,3. Ubiquitylation drives formation of a TCOF1-NOLC1 platform that connects RNA polymerase I with ribosome modification enzymes and remodels the translational program of differentiating cells in favor of neural crest specification. We conclude that ubiquitin-dependent regulation of translation is an important feature of cell fate determination. PMID:26399832

  19. Fate-restricted neural progenitors in the mammalian cerebral cortex.

    Science.gov (United States)

    Franco, Santos J; Gil-Sanz, Cristina; Martinez-Garay, Isabel; Espinosa, Ana; Harkins-Perry, Sarah R; Ramos, Cynthia; Müller, Ulrich

    2012-08-10

    During development of the mammalian cerebral cortex, radial glial cells (RGCs) generate layer-specific subtypes of excitatory neurons in a defined temporal sequence, in which lower-layer neurons are formed before upper-layer neurons. It has been proposed that neuronal subtype fate is determined by birthdate through progressive restriction of the neurogenic potential of a common RGC progenitor. Here, we demonstrate that the murine cerebral cortex contains RGC sublineages with distinct fate potentials. Using in vivo genetic fate mapping and in vitro clonal analysis, we identified an RGC lineage that is intrinsically specified to generate only upper-layer neurons, independently of niche and birthdate. Because upper cortical layers were expanded during primate evolution, amplification of this RGC pool may have facilitated human brain evolution.

  20. Fate of Carbamazepine during Water Treatment

    DEFF Research Database (Denmark)

    Kosjek, T.; Andersen, Henrik Rasmus; Kompare, Boris;

    2009-01-01

    Seven transformation products of carbamazepine generated by at least one of three common water treatment technologies (W-radiation, oxidation with chlorine dioxide (ClO2), and biological treatment with activated Sludge) were identified by complementary use of ion trap, single quadrupole...

  1. BTG interacts with retinoblastoma to control cell fate in Dictyostelium.

    Directory of Open Access Journals (Sweden)

    Daniele Conte

    Full Text Available BACKGROUND: In the genesis of many tissues, a phase of cell proliferation is followed by cell cycle exit and terminal differentiation. The latter two processes overlap: genes involved in the cessation of growth may also be important in triggering differentiation. Though conceptually distinct, they are often causally related and functional interactions between the cell cycle machinery and cell fate control networks are fundamental to coordinate growth and differentiation. A switch from proliferation to differentiation may also be important in the life cycle of single-celled organisms, and genes which arose as regulators of microbial differentiation may be conserved in higher organisms. Studies in microorganisms may thus contribute to understanding the molecular links between cell cycle machinery and the determination of cell fate choice networks. METHODOLOGY/PRINCIPAL FINDINGS: Here we show that in the amoebozoan D. discoideum, an ortholog of the metazoan antiproliferative gene btg controls cell fate, and that this function is dependent on the presence of a second tumor suppressor ortholog, the retinoblastoma-like gene product. Specifically, we find that btg-overexpressing cells preferentially adopt a stalk cell (and, more particularly, an Anterior-Like Cell fate. No btg-dependent preference for ALC fate is observed in cells in which the retinoblastoma-like gene has been genetically inactivated. Dictyostelium btg is the only example of non-metazoan member of the BTG family characterized so far, suggesting that a genetic interaction between btg and Rb predated the divergence between dictyostelids and metazoa. CONCLUSIONS/SIGNIFICANCE: While the requirement for retinoblastoma function for BTG antiproliferative activity in metazoans is known, an interaction of these genes in the control of cell fate has not been previously documented. Involvement of a single pathway in the control of mutually exclusive processes may have relevant implication in the

  2. Cell Fate Switch during In Vitro Plant Organogenesis

    Institute of Scientific and Technical Information of China (English)

    Xiang Yu Zhao; Ying Hua Su; Zhi Juan Cheng; Xian Sheng Zhang

    2008-01-01

    Plant mature cells have the capability to reverse their state of differenUation and produce new organs under cultured conditions. Two phases, dedifferentiation and redifferentiation, are commonly characterized during in vitro organogenesis.In these processes, cells undergo fate switch several times regulated by both extrinsic and intrinsic factors, which are associated with reentry to the cell cycle, the balance between euchromatin and heterochromatin, reprogramming of gene expression, and so forth. This short article reviews the advances in the mechanism of organ regeneration from plant somatic cells in molecular, genomic and epigenetic aspects, aiming to provide important information on the mechanism underlying cell fate switch during in vitro plant organogenesis.

  3. 基于语义网的中文百科知识组织与集成%FU Yuxin, WANG Xin, FENG Zhiyong, et al Organization and integration of Chinese encyclopedia knowledge based on semantic web

    Institute of Scientific and Technical Information of China (English)

    付宇新; 王鑫; 冯志勇; 吕雪栋

    2015-01-01

    It identifies important structural features from immense knowledgeable data in three largest Chinese encyclope-dias(Baidu Encyclopedia, Hudong Encyclopedia, Chinese Wikipedia)and generates RDF triples, then integrates the in-formation data and sets into a distributed large-scale RDF data storage system, and constructs the RDF dataset of Chinese Encyclopedia Knowledge Base that fits with the requirements of Linked Data. The main work includes, configuring the web crawler to crawl the html pages from Baidu Encyclopedia and Hudong Encyclopedia, parsing the content of the infor-mation box to generate RDF triples, downloading Chinese triples data from DBpedia, integrating the data sets into the dis-tributed large-scale RDF data storage system Jingwei, designing the display of dynamic inserting and triple pattern query pages, it also verifies the validity of the method through prototype system experiments.%通过从3个最大的中文百科全书(百度百科、互动百科、中文维基百科)所包含的大规模知识数据中识别重要的结构化特征生成RDF三元组,并将这些信息数据整合加入分布式大规模RDF数据存储系统,从而构成符合Linked Data要求的中文百科知识库RDF数据集。主要工作包括,通过配置网络爬虫对百度百科和互动百科的网页进行爬取,解析其中信息框等内容,生成RDF三元组并实现三元组的动态插入;下载需要的DBpedia中文三元组数据,将三元组进行整合并存储到课题组的大规模语义数据存储库Jingwei中;设计显示动态插入和三元组模式查询的页面,通过原型系统实验,验证了该方法的有效性。

  4. Specification of Epidermal Cell Fate in Plant Shoots

    Directory of Open Access Journals (Sweden)

    Shinobu eTakada

    2014-02-01

    Full Text Available Land plants have evolved a single layer of epidermal cells, which are characterized by mostly anticlinal cell division patterns, formation of a waterproof coat called cuticle, and unique cell types such as stomatal guard cells and trichomes. The shoot epidermis plays important roles not only to protect plants from dehydration and pathogens but also to ensure their proper organogenesis and growth control. Extensive molecular genetic studies in Arabidopsis and maize have identified a number of genes that are required for epidermal cell differentiation. However, the mechanism that specifies shoot epidermal cell fate during plant organogenesis remains largely unknown. Particularly, little is known regarding positional information that should restrict epidermal cell fate to the outermost cell layer of the developing organs. Recent studies suggested that certain members of the HD-ZIP class IV homeobox genes are possible master regulators of shoot epidermal cell fate. Here, we summarize the roles of the regulatory genes that are involved in epidermal cell fate specification and discuss the possible mechanisms that limit the expression and/or activity of the master transcriptional regulators to the outermost cell layer in plant shoots.

  5. Cell fate determination in zebrafish embryonic and adult muscle development

    NARCIS (Netherlands)

    Tee, J.M.

    2010-01-01

    We are interested in how the genetic basis of muscle precursor cells determines the outcome of the muscle cell fate, and thus leading to disruption in muscle formation and maintenance. We utilized the zebrafish carrying mutations in both Axin1 and Apc1, resulting in overactivation of the Wnt/beta-ca

  6. Modeling nanomaterial fate and uptake in the environment

    NARCIS (Netherlands)

    Baalousha, M.; Cornelis, G.; Kuhlbusch, T.A.J.; Lynch, I.; Nickel, C.; Peijnenburg, W.; Brink, Van Den N.W.

    2016-01-01

    Modeling the environmental fate of nanomaterials (NMs) and their uptake by cells and organisms in the environment is essential to underpin experimental research, develop overarching theories, improve our fundamental understanding of NM exposure and hazard, and thus enable risk assessment of NMs.

  7. It’s fate : A self-organising evolutionary algorithm

    NARCIS (Netherlands)

    Bim, J.; Karafotias, G.; Smit, S.K.; Eiben, A.E.; Haasdijk, E.

    2012-01-01

    We introduce a novel evolutionary algorithm where the centralized oracle –the selection-reproduction loop– is replaced by a distributed system of Fate Agents that autonomously perform the evolutionary operations. This results in a distributed, situated, and self-organizing EA, where candidate soluti

  8. Atmospheric fate of non volatile and ionizable compounds

    DEFF Research Database (Denmark)

    Franco, Antonio; Hauschild, Michael Zwicky; Jolliet, Olivier

    2011-01-01

    A modified version of theMultimedia Activity Model for Ionics MAMI, including two-layered atmosphere,air–water interface partitioning, intermittent rainfall and variable cloud coverage was developed to simulate the atmospheric fate of ten low volatility or ionizable organic chemicals. Probabilist...

  9. Fate and transport of arsenic from organoarsenicals fed to poultry

    Science.gov (United States)

    Little is known about the fate of arsenic (As) in land-applied litter from chickens that have been fed roxarsone, an organic feed additive containing As. This chapter seeks to review the likelyhood of the biodegradation of roxarsone and the subsequent transport of As in runoff from a case study cond...

  10. THE FATE OF TANNINS IN CORSICAN PINE LITTER

    NARCIS (Netherlands)

    Nierop, K.G.J.; Verstraten, J.M.

    2006-01-01

    Tannins are ubiquitous in higher plants and therefore also in litter and soils where they affect many biogeochemical processes. Despite this well recognized role, the fate of tannins in litter and mineral soils is hardly known as often only trace amounts, if any, of tannins are measured. In this stu

  11. Cdc20 control of cell fate during prolonged mitotic arrest

    DEFF Research Database (Denmark)

    Nilsson, Jakob

    2011-01-01

    The fate of cells arrested in mitosis by antimitotic compounds is complex but is influenced by competition between pathways promoting cell death and pathways promoting mitotic exit. As components of both of these pathways are regulated by Cdc20-dependent degradation, I hypothesize that variations...

  12. Fate and lability of silver in soils: Effect of ageing

    Science.gov (United States)

    The fate and lability of added soluble Ag in soils over time was examined by measurement of labile metal (E-value) by isotopic dilution using the 110mAg radioactive isotope and the solid-phase speciation of Ag by X-ray absorption near edge structure (XANES) spectrosco...

  13. Cell fate in the hand of Plk4

    NARCIS (Netherlands)

    Tanenbaum, Marvin E.; Medema, Rene H.

    2007-01-01

    The transcription factor Hand1 is required for cell-fate determination during placental development. Recent work shows that release of Hand1 from the nucleolus controls differentiation of trophoblast stem cells into trophoblast giant cells, and this switch is controlled by the antagonistic activitie

  14. 40 CFR 158.1300 - Environmental fate data requirements table.

    Science.gov (United States)

    2010-07-01

    ... transformation products. 7. Environmental chemistry methods used to generate data associated with this study must... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Environmental fate data requirements table. 158.1300 Section 158.1300 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED...

  15. Stochastic Cell Fate Progression in Embryonic Stem Cells

    Science.gov (United States)

    Zou, Ling-Nan; Doyle, Adele; Jang, Sumin; Ramanathan, Sharad

    2013-03-01

    Studies on the directed differentiation of embryonic stem (ES) cells suggest that some early developmental decisions may be stochastic in nature. To identify the sources of this stochasticity, we analyzed the heterogeneous expression of key transcription factors in single ES cells as they adopt distinct germ layer fates. We find that under sufficiently stringent signaling conditions, the choice of lineage is unambiguous. ES cells flow into differentiated fates via diverging paths, defined by sequences of transitional states that exhibit characteristic co-expression of multiple transcription factors. These transitional states have distinct responses to morphogenic stimuli; by sequential exposure to multiple signaling conditions, ES cells are steered towards specific fates. However, the rate at which cells travel down a developmental path is stochastic: cells exposed to the same signaling condition for the same amount of time can populate different states along the same path. The heterogeneity of cell states seen in our experiments therefore does not reflect the stochastic selection of germ layer fates, but the stochastic rate of progression along a chosen developmental path. Supported in part by the Jane Coffin Childs Fund

  16. Models of Fate and Transport of Pollutants in Surface Waters

    Science.gov (United States)

    Okome, Gloria Eloho

    2013-01-01

    There is the need to answer very crucial questions of "what happens to pollutants in surface waters?" This question must be answered to determine the factors controlling fate and transport of chemicals and their evolutionary state in surface waters. Monitoring and experimental methods are used in establishing the environmental states.…

  17. Loop quantum effect and the fate of tachyon field collapse

    OpenAIRE

    Tavakoli, Y.; Moniz, P. Vargas; Marto, J.; Ziaie, A. H.

    2012-01-01

    We study the fate of gravitational collapse of a tachyon field matter. In presence of an inverse square potential a black hole forms. Loop quantum corrections lead to the avoidance of classical singularities, which is followed by an outward flux of energy.

  18. The 'History and Fate of the Universe' chart debuts

    CERN Multimedia

    Yarris, L

    2003-01-01

    A chart that illustrates and summarizes what is now known about the history and fate of the universe has been developed by scientists at the Lawrence Berkeley National Laboratory in collaboration with the Contemporary Physics Education Project (CPEP). More than 11,000 copies will be distributed to high school science teachers across the nation for field-testing with their students (1 page).

  19. Models of Fate and Transport of Pollutants in Surface Waters

    Science.gov (United States)

    Okome, Gloria Eloho

    2013-01-01

    There is the need to answer very crucial questions of "what happens to pollutants in surface waters?" This question must be answered to determine the factors controlling fate and transport of chemicals and their evolutionary state in surface waters. Monitoring and experimental methods are used in establishing the environmental states.…

  20. Fates of trees damaged by logging in Amazonian Bolivia

    NARCIS (Netherlands)

    Shenkin, A.; Bolker, B.; Peña Claros, M.; Licona, J.C.; Putz, F.E.

    2015-01-01

    Estimation of carbon losses from trees felled and incidentally-killed during selective logging of tropical forests is relatively straightforward and well-documented, but less is known about the fates of collaterally-damaged trees that initially survive. Tree response to logging damage is an importan

  1. Fate of linear alkylbenzene sulfonate (LAS) in activated sludge plants

    NARCIS (Netherlands)

    Temmink, B.G.; Klapwijk, A.

    2004-01-01

    Monitoring data were collected in a pilot-scale municipal activated sludge plant to assess the fate of the C12-homologue of linear alkyl benzene sulfonate (LAS-C12). The pilot-plant was operated at influent LAS-C12 concentrations between 2 and 12 mg/l and at sludge retention times of 10 and 27 days<

  2. Self-organising sensor web using cell-fate optimisation

    CSIR Research Space (South Africa)

    Van Zyl, TL

    2009-07-01

    Full Text Available may be doing so both dynamically and stochastically. When presented by a dynamic and stochastic changing environment, such as a sensor resource unexpectedly going down, a self-adaptive system should exhibit robustness. Cell-fate optimisation and signal...

  3. Data Mining Approaches for Genomic Biomarker Development: Applications Using Drug Screening Data from the Cancer Genome Project and the Cancer Cell Line Encyclopedia.

    Directory of Open Access Journals (Sweden)

    David G Covell

    Full Text Available Developing reliable biomarkers of tumor cell drug sensitivity and resistance can guide hypothesis-driven basic science research and influence pre-therapy clinical decisions. A popular strategy for developing biomarkers uses characterizations of human tumor samples against a range of cancer drug responses that correlate with genomic change; developed largely from the efforts of the Cancer Cell Line Encyclopedia (CCLE and Sanger Cancer Genome Project (CGP. The purpose of this study is to provide an independent analysis of this data that aims to vet existing and add novel perspectives to biomarker discoveries and applications. Existing and alternative data mining and statistical methods will be used to a evaluate drug responses of compounds with similar mechanism of action (MOA, b examine measures of gene expression (GE, copy number (CN and mutation status (MUT biomarkers, combined with gene set enrichment analysis (GSEA, for hypothesizing biological processes important for drug response, c conduct global comparisons of GE, CN and MUT as biomarkers across all drugs screened in the CGP dataset, and d assess the positive predictive power of CGP-derived GE biomarkers as predictors of drug response in CCLE tumor cells. The perspectives derived from individual and global examinations of GEs, MUTs and CNs confirm existing and reveal unique and shared roles for these biomarkers in tumor cell drug sensitivity and resistance. Applications of CGP-derived genomic biomarkers to predict the drug response of CCLE tumor cells finds a highly significant ROC, with a positive predictive power of 0.78. The results of this study expand the available data mining and analysis methods for genomic biomarker development and provide additional support for using biomarkers to guide hypothesis-driven basic science research and pre-therapy clinical decisions.

  4. Microarray and synchronization of neuronal differentiation with pathway changes in the Kyoto Encyclopedia of Genes and Genomes (KEGG) databank in nerve growth factor-treated PC12 cells.

    Science.gov (United States)

    Lin, Chih-Ming; Feng, Wayne

    2012-08-01

    The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database creates networks from interrelations between molecular biology and underlying chemical elements. This allows for analysis of biologic networks, genomic information, and higher-order functional information at a systems level. We performed microarray experiments and used the KEGG database, systems biology analysis, and annotation of pathway function to study nerve growth factor (NGF)-induced differentiation of PC12 cells. Cells were cultured to 70%-80% confluence, treated with NGF for 1 or 3 hours (h), and RNA was extracted. Stage 1 data analysis involved analysis of variance (ANOVA), and stage 2 involved cluster analysis and heat map generation. We identified 2020 NGF-induced PC12 genes (1038 at 1 h and 1554 at 3 h). Results showed changes in gene expression over time. We compared these genes with 6035 genes from the KEGG database. Cross-matching resulted in 830 genes. Among these, we identified 395 altered genes (155 at 1 h and 301 at 3 h; 2-fold increase from 1 h to 3 h). We identified 191 biologic pathways in the KEGG database; the top 15 showed correlations with neuronal differentiation (mitogen-activated protein kinase [MAPK] pathway: 35 genes at 1 h, 54 genes at 3 h; genes associated with axonal guidance: 12 at 1 h, 26 at 3 h; Wnt pathway: 16 at 1 h, 25 at 3 h; neurotrophin pathway: 4 at 1 h, 14 at 3 h). Thus, we identified changes in neuronal differentiation pathways with the KEGG database, which were synchronized with NGF-induced differentiation.

  5. Data Mining Approaches for Genomic Biomarker Development: Applications Using Drug Screening Data from the Cancer Genome Project and the Cancer Cell Line Encyclopedia.

    Science.gov (United States)

    Covell, David G

    2015-01-01

    Developing reliable biomarkers of tumor cell drug sensitivity and resistance can guide hypothesis-driven basic science research and influence pre-therapy clinical decisions. A popular strategy for developing biomarkers uses characterizations of human tumor samples against a range of cancer drug responses that correlate with genomic change; developed largely from the efforts of the Cancer Cell Line Encyclopedia (CCLE) and Sanger Cancer Genome Project (CGP). The purpose of this study is to provide an independent analysis of this data that aims to vet existing and add novel perspectives to biomarker discoveries and applications. Existing and alternative data mining and statistical methods will be used to a) evaluate drug responses of compounds with similar mechanism of action (MOA), b) examine measures of gene expression (GE), copy number (CN) and mutation status (MUT) biomarkers, combined with gene set enrichment analysis (GSEA), for hypothesizing biological processes important for drug response, c) conduct global comparisons of GE, CN and MUT as biomarkers across all drugs screened in the CGP dataset, and d) assess the positive predictive power of CGP-derived GE biomarkers as predictors of drug response in CCLE tumor cells. The perspectives derived from individual and global examinations of GEs, MUTs and CNs confirm existing and reveal unique and shared roles for these biomarkers in tumor cell drug sensitivity and resistance. Applications of CGP-derived genomic biomarkers to predict the drug response of CCLE tumor cells finds a highly significant ROC, with a positive predictive power of 0.78. The results of this study expand the available data mining and analysis methods for genomic biomarker development and provide additional support for using biomarkers to guide hypothesis-driven basic science research and pre-therapy clinical decisions.

  6. Effect of composting on the fate of steroids in beef cattle manure

    Science.gov (United States)

    In this study, the fate of steroid hormones in beef cattle manure composting is evaluated. The fate of 16 steroids and metabolites was evaluated in composted manure from beef cattle administered growth promotants and from beef cattle with no steroid hormone implants. The fate of estrogens (primary...

  7. Survey and discussion of models applicable to the transport and fate thrust area of the Department of Energy Chemical and Biological Nonproliferation Program

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-09-01

    The availability and easy production of toxic chemical and biological agents by domestic and international terrorists pose a serious threat to US national security, especially to civilian populations in and around urban areas. To address this threat, the Department of Energy (DOE) has established the Chemical and Biological Nonproliferation Program (CBNP) with the goal of focusing the DOE`s technical resources and expertise on capabilities to deny, deter, mitigate and respond to clandestine releases of chemical and biological agents. With the intent to build on DOE core competencies, the DOE has established six technology thrust areas within the CBNP Program: Biological Information Resources; Point Sensor Systems; Stand-off Detection; Transport and Fate; Decontamination; and Systems Analysis and Integration. The purpose of the Transport and Fate Thrust is to accurately predict the dispersion, concentration and ultimate fate of chemical and biological agents released into the urban and suburban environments and has two major goals: (1) to develop an integrated and validated state-of-the-art atmospheric transport and fate modeling capability for chemical and biological agent releases within the complex urban environment from the regional scale down to building and subway interiors, and (2) to apply this modeling capability in a broad range of simulation case studies of chemical and biological agent release scenarios in suburban, urban and confined (buildings and subways) environments and provide analysis for the incident response user community. Sections of this report discuss subway transport and fate models; buildings interior transport and fate modeling; models for flow and transport around buildings; and local-regional meteorology and dispersion models.

  8. The fate of electron–hole pairs in polymer:fullerene blends for organic photovoltaics

    Science.gov (United States)

    Causa', Martina; De Jonghe-Risse, Jelissa; Scarongella, Mariateresa; Brauer, Jan C.; Buchaca-Domingo, Ester; Moser, Jacques-E.; Stingelin, Natalie; Banerji, Natalie

    2016-01-01

    There has been long-standing debate on how free charges are generated in donor:acceptor blends that are used in organic solar cells, and which are generally comprised of a complex phase morphology, where intermixed and neat phases of the donor and acceptor material co-exist. Here we resolve this question, basing our conclusions on Stark effect spectroscopy data obtained in the absence and presence of externally applied electric fields. Reconciling opposing views found in literature, we unambiguously demonstrate that the fate of photogenerated electron–hole pairs—whether they will dissociate to free charges or geminately recombine—is determined at ultrafast times, despite the fact that their actual spatial separation can be much slower. Our insights are important to further develop rational approaches towards material design and processing of organic solar cells, assisting to realize their purported promise as lead-free, third-generation energy technology that can reach efficiencies over 10%. PMID:27586309

  9. The fate of electron-hole pairs in polymer:fullerene blends for organic photovoltaics

    Science.gov (United States)

    Causa', Martina; de Jonghe-Risse, Jelissa; Scarongella, Mariateresa; Brauer, Jan C.; Buchaca-Domingo, Ester; Moser, Jacques-E.; Stingelin, Natalie; Banerji, Natalie

    2016-09-01

    There has been long-standing debate on how free charges are generated in donor:acceptor blends that are used in organic solar cells, and which are generally comprised of a complex phase morphology, where intermixed and neat phases of the donor and acceptor material co-exist. Here we resolve this question, basing our conclusions on Stark effect spectroscopy data obtained in the absence and presence of externally applied electric fields. Reconciling opposing views found in literature, we unambiguously demonstrate that the fate of photogenerated electron-hole pairs--whether they will dissociate to free charges or geminately recombine--is determined at ultrafast times, despite the fact that their actual spatial separation can be much slower. Our insights are important to further develop rational approaches towards material design and processing of organic solar cells, assisting to realize their purported promise as lead-free, third-generation energy technology that can reach efficiencies over 10%.

  10. The fate of electron–hole pairs in polymer:fullerene blends for organic photovoltaics

    KAUST Repository

    Causa', Martina

    2016-09-02

    There has been long-standing debate on how free charges are generated in donor: acceptor blends that are used in organic solar cells, and which are generally comprised of a complex phase morphology, where intermixed and neat phases of the donor and acceptor material co-exist. Here we resolve this question, basing our conclusions on Stark effect spectroscopy data obtained in the absence and presence of externally applied electric fields. Reconciling opposing views found in literature, we unambiguously demonstrate that the fate of photogenerated electron-hole pairs-whether they will dissociate to free charges or geminately recombine-is determined at ultrafast times, despite the fact that their actual spatial separation can be much slower. Our insights are important to further develop rational approaches towards material design and processing of organic solar cells, assisting to realize their purported promise as lead-free, third-generation energy technology that can reach efficiencies over 10%.

  11. The fate of electron-hole pairs in polymer:fullerene blends for organic photovoltaics.

    Science.gov (United States)

    Causa', Martina; De Jonghe-Risse, Jelissa; Scarongella, Mariateresa; Brauer, Jan C; Buchaca-Domingo, Ester; Moser, Jacques-E; Stingelin, Natalie; Banerji, Natalie

    2016-09-02

    There has been long-standing debate on how free charges are generated in donor:acceptor blends that are used in organic solar cells, and which are generally comprised of a complex phase morphology, where intermixed and neat phases of the donor and acceptor material co-exist. Here we resolve this question, basing our conclusions on Stark effect spectroscopy data obtained in the absence and presence of externally applied electric fields. Reconciling opposing views found in literature, we unambiguously demonstrate that the fate of photogenerated electron-hole pairs-whether they will dissociate to free charges or geminately recombine-is determined at ultrafast times, despite the fact that their actual spatial separation can be much slower. Our insights are important to further develop rational approaches towards material design and processing of organic solar cells, assisting to realize their purported promise as lead-free, third-generation energy technology that can reach efficiencies over 10%.

  12. Fate of citalopram during water treatment with O3, ClO2, UV and fenton oxidation

    DEFF Research Database (Denmark)

    Hörsing, Maritha; Kosjek, Tina; Andersen, Henrik Rasmus;

    2012-01-01

    In the present study we investigate the fate of citalopram (CIT) at neutral pH using advanced water treatment technologies that include O3, ClO2 oxidation, UV irradiation and Fenton oxidation. The ozonation resulted in 80% reduction after 30 min treatment. Oxidation with ClO2 removed >90% CIT...... at a dosage of 0.1 mg L−1. During UV irradiation 85% reduction was achieved after 5 min, while Fenton with addition of 14 mg L−1 (Fe2+) resulted in 90% reduction of CIT. During these treatment experiments transformation products (TPs) were formed from CIT, where five compounds were identified by using high...

  13. 中文网络百科开放分类层次结构树及其聚类算法研究%Research on Chinese online encyclopedia open category hierarchy tree and clustering algorithms

    Institute of Scientific and Technical Information of China (English)

    贾真; 尹红风; 李天瑞

    2013-01-01

    To use open category to categorize and retrieve the encyclopedia entries,this paper proposed the open category clustering algorithm based on word co-occurrence and semantic analysis,and the method of generating open category hierarchy trees.It proposed a hierarchy tree clustering algorithm based on similarity and correlation computing for increasing the quality of hierarchy trees.Experimental data set was downloaded from Hudong online encyclopedia.The experimental results show that the proposed algorithms achieve high precision and the generated hierarchy trees effectively improve the efficiency of encyclopedia entries retrieval.%为利用开放分类进行百科条目的分类和检索,提出了基于词共现和语义分析的开放分类聚类算法以及开放分类层次结构树构建方法;为了进一步提高层次结构树的聚合度,提出了基于相似度和相关度计算的层次结构树聚类算法.以互动百科开放分类为实验数据集,实验结果表明,所构建的开放分类层次结构树的准确率较高,利用开放分类层次结构树有效提高了百科条目检索的效率.

  14. Statistics and Analysis of Wiki-Based Chinese Online-Encyclopedia Cited by Journal Papers%期刊论文引用中文 Wiki 网络百科的统计与分析

    Institute of Scientific and Technical Information of China (English)

    丁玉东; 张春峰; 刘颖

    2013-01-01

    Abstract It counted the amount of the wiki-based Chinese online-encyclopedia cited by journal articles from 2006 to 2012. The number of articles, citation department, subject of the articles, and the journals were analyzed in terms of quantity distribution, also with the citing content and citing motivation of the articles that cited online-encyclopedia entry was analyzed by sampling method. Results showed that the influence of online-encyclopedia in academic activities was gradually rising, more and more scholars cited its concept, digit and con-tent to support their point of views, but no one questioned the contents of the entry when they cited it, which was a phenomenon more ap-parent in the field of social science.%  对2006~2012年间引用 Wiki 模式中文网络百科词条的中文期刊论文数量进行了统计,从论文数量、引用的单位、论文所在的学科、论文所在的期刊等方面分析了数量分布情况,并通过抽样方法分析了学术文献引用网络百科词条的内容和动机。结果标明网络百科在学术活动中的影响力正在逐步攀升,越来越多的学术作者借鉴了其中的概念、数字和内容支撑自己的观点,但没有学者在引用时质疑词条中的内容,这一现象在社会科学领域更为明显。

  15. Perceived Credibility of Internet Encyclopedias

    Science.gov (United States)

    Kubiszewski, Ida; Noordewier, Thomas; Costanza, Robert

    2011-01-01

    A vast amount of information is now available online, produced by a variety of sources with a range of editorial oversight procedures. These range from very centralized information with multiple layers of review, to no oversight at all. Determining which information is credible can pose a real challenge. An experiment was designed to determine…

  16. Encyclopedia of earth system science

    National Research Council Canada - National Science Library

    Nierenberg, William Aaron

    1992-01-01

    .... The very diversity of the articles attests to the complexity of earth system science as a unique interdisciplinary venture to place humanity in a position to move wisely to protect the global habitat...

  17. Testability/Diagnostics Design Encyclopedia

    Science.gov (United States)

    1990-09-01

    decision logic o Environmental effets filtering and Identification. Fractlon of Erroneous Fault Isolation Results (IPQI) FEFI Is the fraction of BIT or...CONCURRENHT SIMULATION OPflMC TIlT WIT4 LAN ACCELERATION VECTOR Serr VAT" OPTION STATGRAD6, THEN Use TISTORADE THESEUS VL8VK9 AFTIER EACH TEST

  18. An encyclopedia of mouse genes.

    Science.gov (United States)

    Marra, M; Hillier, L; Kucaba, T; Allen, M; Barstead, R; Beck, C; Blistain, A; Bonaldo, M; Bowers, Y; Bowles, L; Cardenas, M; Chamberlain, A; Chappell, J; Clifton, S; Favello, A; Geisel, S; Gibbons, M; Harvey, N; Hill, F; Jackson, Y; Kohn, S; Lennon, G; Mardis, E; Martin, J; Mila, L; McCann, R; Morales, R; Pape, D; Person, B; Prange, C; Ritter, E; Soares, M; Schurk, R; Shin, T; Steptoe, M; Swaller, T; Theising, B; Underwood, K; Wylie, T; Yount, T; Wilson, R; Waterston, R

    1999-02-01

    The laboratory mouse is the premier model system for studies of mammalian development due to the powerful classical genetic analysis possible (see also the Jackson Laboratory web site, http://www.jax.org/) and the ever-expanding collection of molecular tools. To enhance the utility of the mouse system, we initiated a program to generate a large database of expressed sequence tags (ESTs) that can provide rapid access to genes. Of particular significance was the possibility that cDNA libraries could be prepared from very early stages of development, a situation unrealized in human EST projects. We report here the development of a comprehensive database of ESTs for the mouse. The project, initiated in March 1996, has focused on 5' end sequences from directionally cloned, oligo-dT primed cDNA libraries. As of 23 October 1998, 352,040 sequences had been generated, annotated and deposited in dbEST, where they comprised 93% of the total ESTs available for mouse. EST data are versatile and have been applied to gene identification, comparative sequence analysis, comparative gene mapping and candidate disease gene identification, genome sequence annotation, microarray development and the development of gene-based map resources.

  19. 《中原文化大典》温县盟书考释(十一则)%Interpretations of Pledges from Wenxian Recorded in Encyclopedia of Central Plains Culture

    Institute of Scientific and Technical Information of China (English)

    何家兴

    2012-01-01

    By referring to Warring States texts and the latest philological findings, this paper explores some unidentified characters in the pledges from Wenxian recorded in the Encyclopedia of Central Plains Culture and makes corrections.%本文参照其他品类战国文字资料,结合文字学最新考释成果,对《中原文化大典》收录的温县盟书资料部分未释及误释字提出新的考释意见。

  20. Polar bears: the fate of an icon.

    Science.gov (United States)

    Fitzgerald, Kevin T

    2013-11-01

    Polar bears are one of the most iconic animals on our planet. Worldwide, even people who would never see one are drawn to these charismatic arctic ice hunters. They are the world's largest terrestrial carnivore, and despite being born on land, they spend most of their lives out on the sea ice and are considered a marine mammal. Current global studies estimate there are around 20,000 animals in some 19 discrete circumpolar populations. Aside from pregnant females denning in the winter months to give birth, the white bears do not hibernate. They spend their winters on the sea ice hunting seals, an activity they are spectacularly adapted for. Research on these animals is incredibly difficult because of the inhospitable surroundings they inhabit and how inaccessible they make the bears. For many years, the sum of our understanding of the natural history of polar bears came from tracks, scats, the remains of their kills, abandoned dens, and anecdotal observations of native hunters, explorers, and early biologists. Nonetheless, the last 40 years have seen a much better picture of their biology emerge thanks to, first, dedicated Canadian researchers and, later, truly international efforts of workers from many countries. Veterinarians have contributed to our knowledge of the bears by delivering and monitoring anesthesia, obtaining blood samples, performing necropsies, investigating their reproduction, conducting radiotelemetry studies, and examining their behavior. Recently, new technologies have been developed that revolutionize the study of the lives and natural history of undisturbed polar bears. These advances include better satellite radiotelemetry equipment and the development of remote-controlled miniature devices equipped with high-definition cameras. Such new modalities provide dramatic new insights into the life of polar bears. The remarkable degree of specialized adaptation to life on the sea ice that allowed the bears to be successful is the very reason that

  1. Intercellular coupling amplifies fate segregation during Caenorhabditis elegans vulval development.

    Science.gov (United States)

    Giurumescu, Claudiu A; Sternberg, Paul W; Asthagiri, Anand R

    2006-01-31

    During vulval development in Caenorhabditis elegans, six precursor cells acquire a spatial pattern of distinct cell fates. This process is guided by a gradient in the soluble factor, LIN-3, and by direct interactions between neighboring cells mediated by the Notch-like receptor, LIN-12. Genetic evidence has revealed that these two extracellular signals are coupled: lateral cell-cell interactions inhibit LIN-3-mediated signaling, whereas LIN-3 regulates the extent of lateral signaling. To elucidate the quantitative implications of this coupled network topology for cell patterning during vulval development, we developed a mathematical model of LIN-3/LIN-12-mediated signaling in the vulval precursor cell array. Our analysis reveals that coupling LIN-3 and LIN-12 amplifies cellular perception of the LIN-3 gradient and polarizes lateral signaling, both of which enhance fate segregation beyond that achievable by an uncoupled system.

  2. Ultrastructural and functional fate of recycled vesicles in hippocampal synapses.

    Science.gov (United States)

    Rey, Stephanie A; Smith, Catherine A; Fowler, Milena W; Crawford, Freya; Burden, Jemima J; Staras, Kevin

    2015-01-01

    Efficient recycling of synaptic vesicles is thought to be critical for sustained information transfer at central terminals. However, the specific contribution that retrieved vesicles make to future transmission events remains unclear. Here we exploit fluorescence and time-stamped electron microscopy to track the functional and positional fate of vesicles endocytosed after readily releasable pool (RRP) stimulation in rat hippocampal synapses. We show that most vesicles are recovered near the active zone but subsequently take up random positions in the cluster, without preferential bias for future use. These vesicles non-selectively queue, advancing towards the release site with further stimulation in an actin-dependent manner. Nonetheless, the small subset of vesicles retrieved recently in the stimulus train persist nearer the active zone and exhibit more privileged use in the next RRP. Our findings reveal heterogeneity in vesicle fate based on nanoscale position and timing rules, providing new insights into the origins of future pool constitution.

  3. Fate of enniatins and deoxynivalenol during pasta cooking.

    Science.gov (United States)

    de Nijs, Monique; van den Top, Hester; de Stoppelaar, Joyce; Lopez, Patricia; Mol, Hans

    2016-12-15

    The fate of deoxynivalenol and enniatins was studied during cooking of commercially available dry pasta in the Netherlands in 2014. Five samples containing relatively high levels of deoxynivalenol and/or enniatins were selected for the cooking experiment. Cooking was performed in duplicate on different days, under standardised conditions, simulating house-hold preparation. Samples were extracted with a mixture of acetonitrile/water followed by salt-induced partitioning. The extracts were analysed by LC-MS/MS. The method limits of detection were 8μg/kg for deoxynivalenol, 10μg/kg for enniatin A1 and 5μg/kg for enniatins A, B and B1. During the cooking of the five dry pasta samples, 60% of the deoxynivalenol and 83-100% of the enniatins were retained in the cooked pasta. It is recommended to study food processing fate of mycotoxins through naturally contaminated materials (incurred materials).

  4. Cell fate determination during tooth development and regeneration.

    Science.gov (United States)

    Mitsiadis, Thimios A; Graf, Daniel

    2009-09-01

    Teeth arise from sequential and reciprocal interactions between the oral epithelium and the underlying cranial neural crest-derived mesenchyme. Their formation involves a precisely orchestrated series of molecular and morphogenetic events, and gives us the opportunity to discover and understand the nature of the signals that direct cell fates and patterning. For that reason, it is important to elucidate how signaling factors work together in a defined number of cells to generate the diverse and precise patterned structures of the mature functional teeth. Over the last decade, substantial research efforts have been directed toward elucidating the molecular mechanisms that control cell fate decisions during tooth development. These efforts have contributed toward the increased knowledge on dental stem cells, and observation of the molecular similarities that exist between tooth development and regeneration.

  5. Fate of Deposited Nitrogen in Tropical Forests in Southern China

    DEFF Research Database (Denmark)

    Gurmesa, Geshere Abdisa

    Tropical forests are generally regarded as naturally nitrogen (N)-rich ecosystems where N availability is in excess of biological demands. These forests are usually characterized by increased soil N cycling rates such as mineralization and nitrification causing loss of N through leaching...... these negative consequences. Thus, an improved understanding of how increased atmospheric N deposition impacts N retention efficiency of tropical forests is needed. However, the fate of deposited N in tropical forest ecosystems and its retention mechanisms remains elusive. This PhD thesis used the stable...... nitrogen (N) isotope 15N to uncover two aspects of N cycling in tropical forests: i) the patterns of ecosystem natural 15N abundance (δ15N) in relation to the 15N signature of deposition N, and its response to increased N deposition; ii) the fate of ambient and increased N deposition in the same forests...

  6. Climate change, deforestation and the fate of Amazon

    Directory of Open Access Journals (Sweden)

    Alberti G

    2008-03-01

    Full Text Available Climate change, deforestation and the fate of Amazon. Understanding and mitigation the impact of the increasing population and global economic activities on tropical forests is one of the greatest challenges for scientists and policy makers. A summary of some of the latest findings and thinking on this topic has been reported by Malhi and colleagues in a recent paper published on Science. An overview and comments on this paper is herein proposed.

  7. Multicongenic fate mapping quantification of dynamics of thymus colonization

    OpenAIRE

    Ziętara, Natalia; Łyszkiewicz, Marcin; Puchałka, Jacek; Witzlau, Katrin; Reinhardt, Annika; Förster, Reinhold; Pabst, Oliver; Prinz, Immo; Krueger, Andreas

    2015-01-01

    Postnatal T cell development depends on continuous colonization of the thymus by BM-derived T lineage progenitors. Both quantitative parameters and the mechanisms of thymus seeding remain poorly understood. Here, we determined the number of dedicated thymus-seeding progenitor niches (TSPNs) capable of supporting productive T cell development, turnover rates of niche occupancy, and feedback mechanisms. To this end, we established multicongenic fate mapping combined with mathematical modeling t...

  8. Neural induction and factors that stabilize a neural fate

    OpenAIRE

    Rogers, Crystal; Moody, Sally A.; Casey, Elena

    2009-01-01

    The neural ectoderm of vertebrates forms when the BMP signaling pathway is suppressed. Herein we review the molecules that directly antagonize extracellular BMP and the signaling pathways that further contribute to reduce BMP activity in the neural ectoderm. Downstream of neural induction, a large number of “neural fate stabilizing” (NFS) transcription factors are expressed in the presumptive neural ectoderm, developing neural tube, and ultimately in neural stem cells. Herein we review what i...

  9. Development of regionalized multimedia chemical fate models for China

    OpenAIRE

    Zhu, Ying; Jones, Kevin; Sweetman, Andrew; Price, Oliver; Tao, Shu

    2016-01-01

    To balance the economic development with environmental safety and human health, China has released chemicals management legislation for which chemical prioritization and risk assessment are key issues. To support these ambitions two versions of an environmental fate and behaviour model SESAMe (Sino Evaluative Simplebox-MAMI models), have been developed with different resolutions and structures in this thesis. SESAMe is applied to hypothetical chemicals to investigate the influence of environm...

  10. Fate or Flaws:On Oedipus the King

    Institute of Scientific and Technical Information of China (English)

    覃思

    2008-01-01

    @@ People usually think that Oedipus in Sophocles'Oedipus the King is the most tragic and innocentprotagonist among all the characters in ancient Greekdramas. Yet, after reading this masterpiece I can' thelp asking: is Oedipus really so desperate that he evendoesn't have a slightest chance to make things right andto avoid that tragedy? Not exactly. Fate, prophesy andhis own flaws together lead the tragic outcome comingstep by step.

  11. Neural Induction, Neural Fate Stabilization, and Neural Stem Cells

    Directory of Open Access Journals (Sweden)

    Sally A. Moody

    2002-01-01

    Full Text Available The promise of stem cell therapy is expected to greatly benefit the treatment of neurodegenerative diseases. An underlying biological reason for the progressive functional losses associated with these diseases is the extremely low natural rate of self-repair in the nervous system. Although the mature CNS harbors a limited number of self-renewing stem cells, these make a significant contribution to only a few areas of brain. Therefore, it is particularly important to understand how to manipulate embryonic stem cells and adult neural stem cells so their descendants can repopulate and functionally repair damaged brain regions. A large knowledge base has been gathered about the normal processes of neural development. The time has come for this information to be applied to the problems of obtaining sufficient, neurally committed stem cells for clinical use. In this article we review the process of neural induction, by which the embryonic ectodermal cells are directed to form the neural plate, and the process of neural�fate stabilization, by which neural plate cells expand in number and consolidate their neural fate. We will present the current knowledge of the transcription factors and signaling molecules that are known to be involved in these processes. We will discuss how these factors may be relevant to manipulating embryonic stem cells to express a neural fate and to produce large numbers of neurally committed, yet undifferentiated, stem cells for transplantation therapies.

  12. FY08 LDRD Final Report Stem Cell Fate Decisions

    Energy Technology Data Exchange (ETDEWEB)

    Hiddessen, A

    2009-03-02

    A detailed understanding of the biological control of fate decisions of stem and progenitor cells is needed to harness their full power for tissue repair and/or regeneration. Currently, internal and external factors that regulate stem cell fate are not fully understood. We aim to engineer biocompatible tools to facilitate the measurement and comparison of the roles and significance of immobilized factors such as extracellular matrix and signaling peptides, synergistic and opposing soluble factors and signals, and cell-to-cell communication, in stem cell fate decisions. Our approach is based on the development of cell microarrays to capture viable stem/progenitor cells individually or in small clusters onto substrate-bound signals (e.g. proteins), combined with conventional antibody and customized subcellular markers made in-house, to facilitate tracking of cell behavior during exposure to relevant signals. Below we describe our efforts, including methods to manipulate a model epithelial stem cell system using a custom subcellular reporter to track and measure cell signaling, arrays with surface chemistry that support viable cells and enable controlled presentation of immobilized signals to cells on the array and fluorescence-based measurement of cell response, and successful on-array tests via conventional immunofluorescence assays that indicate correct cell polarity, localization of junctional proteins, and phenotype, properties which are essential to measuring true cell responses.

  13. Systems biology approaches to understanding stem cell fate choice.

    Science.gov (United States)

    Peltier, J; Schaffer, D V

    2010-01-01

    Stem cells have the capability to self-renew and maintain their undifferentiated state or to differentiate into one or more specialised cell types. Stem cell expansion and manipulation ex vivo is a promising approach for engineering cell replacement therapies, and endogenous stem cells represent potential drugable targets for tissue repair. Before we can harness stem cells' therapeutic potential, we must first understand the intracellular mechanisms controlling their fate choices. These mechanisms involve complex signal transduction and gene regulation networks that feature, for example, intricate feed-forward loops, feedback loops and cross-talk between multiple signalling pathways. Systems biology applies computational and experimental approaches to investigate the emergent behaviour of collections of molecules and strives to explain how these numerous components interact to regulate molecular, cellular and organismal behaviour. Here we review systems biology, and in particular computational, efforts to understand the intracellular mechanisms of stem cell fate choice. We first discuss deterministic and stochastic models that synthesise molecular knowledge into mathematical formalism, enable simulation of important system behaviours and stimulate further experimentation. In addition, statistical analyses such as Bayesian networks and principal components analysis (PCA)/partial least squares (PLS) regression can distill large datasets into more readily managed networks and principal components that provide insights into the critical aspects and components of regulatory networks. Collectively, integrating modelling with experimentation has strong potential for enabling a deeper understanding of stem cell fate choice and thereby aiding the development of therapies to harness stem cells' therapeutic potential.

  14. Meristem fate and bulbil formation in Titanotrichum (Gesneriaceae).

    Science.gov (United States)

    Wang, Chun-Neng; Cronk, Quentin C B

    2003-12-01

    Titanotrichum oldhamii (a monotypic genus from Taiwan, Okinawa, and adjacent regions of China) has inflorescences bearing either showy yellow flowers or asexual bulbils. Asexual reproduction by bulbils is important in natural populations, and bulbil production increases in August and September at the end of the flowering season (which runs from June to the end of September). The bulbils are small (∼1-2.5 mm long) and numerous. They consist of a small portion of stem (bract-stem) topped by opposite storage bracts that enclose a minute apical meristem. A secondary root develops from the side of the bract-stem. The floral meristem of T. oldhamii has three possible fates: (1) bulbil formation, (2) flower formation, or (3) bracteose proliferation. Bracteose proliferation rarely occurs and appears to be a developmental transition between the bulbiliferous and racemose inflorescence forms. It is strongly reminiscent of the floricaula and squamosa mutants of Antirrhinum. In the bulbiliferous form a single floral primordium, which would normally produce one flower, gives rise to ∼50-70 bulbils by repeated subdivision of the meristem. This form of bulbil production appears to be unique to Titanotrichum. Occasionally a floral meristem divides, but the subdivision forms multiflowered units of up to four flowers rather than bulbils, suggesting that meristem fate is reversible up to the first or second meristem subdivision. In Titanotrichum, therefore, primordium fate is apparently not determined at inception but becomes irreversibly determined shortly after the appearance of developmental characteristics of the floral or bulbil pathway.

  15. The Fate of the Compact Remnant in Neutron Star Mergers

    CERN Document Server

    Fryer, Chris L; Ramirez-Ruiz, Enrico; Rosswog, Stephan; Shen, Gang; Steiner, Andrew W

    2015-01-01

    Neutron star (binary neutron star and neutron star - black hole) mergers are believed to produce short-duration gamma-ray bursts. They are also believed to be the dominant source of gravitational waves to be detected by the advanced LIGO and the dominant source of the heavy r-process elements in the universe. Whether or not these mergers produce short-duration GRBs depends sensitively on the fate of the core of the remnant (whether, and how quickly, it forms a black hole). In this paper, we combine the results of merger calculations and equation of state studies to determine the fate of the cores of neutron star mergers. Using population studies, we can determine the distribution of these fates to compare to observations. We find that black hole cores form quickly only for equations of state that predict maximum non-rotating neutron star masses below 2.3-2.4 solar masses. If quick black hole formation is essential in producing gamma-ray bursts, LIGO observed rates compared to GRB rates could be used to constr...

  16. THE FATE OF THE COMPACT REMNANT IN NEUTRON STAR MERGERS

    Energy Technology Data Exchange (ETDEWEB)

    Fryer, Chris L. [Department of Physics, The University of Arizona, Tucson, AZ 85721 (United States); Belczynski, Krzysztoff [Astronomical Observatory, University of Warsaw, Al Ujazdowskie 4, 00-478 Warsaw (Poland); Ramirez-Ruiz, Enrico [Department of Astronomy and Astrophysics, University of California, Santa Cruz, CA 95064 (United States); Rosswog, Stephan [The Oskar klein Center, Department of Astronomy, AlbaNova, Stockholm University, SE-106 91 Stockholm (Sweden); Shen, Gang [Institute for Nuclear Theory, University of Washington, Seattle, WA 98195 (United States); Steiner, Andrew W. [Department of Physics and Astronomy, University of Tennessee, Knoxville, TN 37996 (United States)

    2015-10-10

    Neutron star (binary neutron star and neutron star–black hole) mergers are believed to produce short-duration gamma-ray bursts (GRBs). They are also believed to be the dominant source of gravitational waves to be detected by the advanced LIGO and advanced VIRGO and the dominant source of the heavy r-process elements in the universe. Whether or not these mergers produce short-duration GRBs depends sensitively on the fate of the core of the remnant (whether, and how quickly, it forms a black hole). In this paper, we combine the results of Newtonian merger calculations and equation of state studies to determine the fate of the cores of neutron star mergers. Using population studies, we can determine the distribution of these fates to compare to observations. We find that black hole cores form quickly only for equations of state that predict maximum non-rotating neutron star masses below 2.3–2.4 solar masses. If quick black hole formation is essential in producing GRBs, LIGO/Virgo observed rates compared to GRB rates could be used to constrain the equation of state for dense nuclear matter.

  17. Environmental fate of rice paddy pesticides in a model ecosystem.

    Science.gov (United States)

    Tomizawa, C; Kazano, H

    1979-01-01

    The distribution and metabolic fate of several rice paddy pesticides were evaluated in a modified model ecosystem. Among the three BHC isomers, beta-isomer was the most stable and bioconcentrated in all of the organisms. Alpha- and gamma-isomers were moderately persistent and degraded to some extent during the 33 day period. Disulfoton was relatively persistent due to the transformation to its oxidation products. Pyridaphenthion was fairly biodegradable. N-Phenyl maleic hydrazide derived from the hydrolysis of pyridaphenthion was not detected in the organisms though it was found in the aquarium water after 33 days. Cartap and edifenphos were considerably biodegradable, and the ratio of the conversion to water soluble metabolites was very high. There was a distinct difference in the persistence of Kitazin P and edifenphos in the aquarium water. It appeared that the hydrolysis rate of the pesticides affected their fate in the organisms. PCP appeared to be moderately biodegradable. CNP was considerably stable and stored in the organisms though the concentration in the aquarium water was relatively low. The persistence and distribution of the pesticides in the model ecosystem were dependent on their chemical structures. In spite of the limitation derived from short experimental period, the model ecosystem may be applicable for predicting the environmental fate of pesticides.

  18. Huizhou’s Compilation of Hakka Culture Encyclopedia and Protection of Non-material Cultural Heritage%惠州市客家文化事典编纂与非物质文化遗产保护

    Institute of Scientific and Technical Information of China (English)

    刘凤锦; 刘焕云

    2014-01-01

    二十一世纪客家研究在两岸都已经成为显学,并且走向深化文化交流与和谐发展的道路。两岸的客家文化有同源的关系,但是在发展过程中又表现出不一样的客家文化风貌,值得加以探讨。文章以惠州市之客家文化事典编纂为例,说明客家文化事典的编纂,可以全面认识客家非物质文化遗产,也有助于客家非物质文化之保存与发扬。%Hakka research has become distinguished both in mainland China and in Taiwan since the beginning of the 21st century, and the both are on the path to deepen cultural exchanges and harmonious development. The Hakka culture of the both has homologous relationship but show different style in the process of development,which is worth exploring. Taking the Hakka Culture Encyclopedia compilation of Huizhou as an example,this paper shows that the compilation of Hakka Culture Encyclopedia can help to have a compre-hensive understanding of Hakka non-material cultural heritage,and to preserve and promote the Hakka intangible cultural heritage.

  19. Fate of silver nanoparticles in wastewater and immunotoxic effects on rainbow trout.

    Science.gov (United States)

    Bruneau, A; Turcotte, P; Pilote, M; Gagné, F; Gagnon, C

    2016-05-01

    Silver nanoparticles (AgNPs) are currently used in technology, medicine and consumer products, even though the fate and the ecotoxicological risks on aquatic organisms of these new materials are not well known. The purpose of this study was to investigate the fate, bioavailability of AgNPs and their effects on fish in presence of municipal effluents. Juvenile rainbow trout were exposed for 96h to 40μg/L of AgNPs or 4μg/L of dissolved silver (AgNO3) in diluted (10%) municipal wastewater. Silver (Ag) concentrations were measured both on water samples and fish tissues (liver and gills). Toxicity was investigated by following immunological parameters in the pronephros (viability, phagocytosis) and biomarkers in liver and gills (cyclooxygenase activity, lipid peroxidation, glutathione-S-transferase, metallothioneins, DNA strand breaks and labile zinc). Results indicated that AgNPs appeared as small non-charged aggregates in wastewaters (11.7±1.4nm). In gills, the exposure to AgNPs induced morphological modifications without visible nanoparticle bioaccumulation. Dissolved Ag(+) was bioavailable in diluted effluent and induced oxidative stress (lipid peroxidation), labile zinc and a marginal decrease in superoxide dismutase in fish gills. Ag(+) also increased significantly metallothionein levels and inhibited the DNA repair activity in the liver. Finally, the two silver forms were found in liver and induced immunosuppression and inflammation (increase in cyclooxygenase activity). This study demonstrated that both forms of Ag produced harmful effects and AgNPs in wastewater were bioavailable to fish despite of their formation of aggregates.

  20. Online encyclopedia entities tagging method based on page struc-ture and content%融合页面结构与内容的在线百科实体标注方法

    Institute of Scientific and Technical Information of China (English)

    李晓静; 林海伦; 贾岩涛; 王元卓; 程学旗

    2015-01-01

    Online encyclopedia entity tagging aims to label online encyclopedia pages with standard named entity tags such as person, location and organization. It is crucial for a wide range of applications such as entity disambigu-ation, entity relation inference and knowledge base construction and so on. Features of encyclopedia pages can be divided as structure features (e.g., Infobox, title, and category) and content features (i.e., page content). Existing methods that only take one feature or simply combine both features in one classification cause low F1 value. These methods don’t make full use of the difference of these features. This paper presents an online encyclopedia entities tagging method based on page structure and content. This method firstly builds two classifiers with the two kinds of features respectively, and then builds a new classifier by linear combination of these two classifiers, so this method can accurately realize entities tagging. The experimental results show that this method can achieve F1 value improve-ment over the baseline methods on the task of encyclopedia entity tagging.%在线百科实体标注目的是标注出属于特定类别(如人名、地名、机构名等)的实体。百科实体标注对大量的应用,诸如实体消歧、实体关系挖掘、知识库构建都很重要。百科实体特征可以分为结构特征(属性框、标题、类别等)和内容特征(页面正文)。现有的标注方法大多只考虑一种特征或者一种分类器,导致F1值较低,无法充分发挥两种特征的优势。因此,提出了融合页面结构特征和内容特征的在线百科实体标注方法。该方法考虑了两种特征对标注结果的影响,分别构造分类器,并且对结果进行线性组合,能够更准确地实现百科实体的实体标注。实验表明,该方法在实体标注中F1值较其他对比实验方法均有所提高。

  1. Integrated model for predicting the fate of organics in waste-water treatment plants

    Energy Technology Data Exchange (ETDEWEB)

    Govind, R.; Lai, L.; Dobbs, R.

    1991-01-01

    An integrated Fate Model has been developed for predicting the fate of organics in a wastewater treatment plant. The Fate Model has been validated using experimental data from a pilot-scale facility. The biodegradation kinetic constants for some compounds in the Fate Model were estimated using the group contribution approach. The Fate Model has been compared with other existing models in the literature. Potential applications of the Fate Model include assessment of volatile organic compound (VOC) emissions from a wastewater treatment plant, evaluate pretreatment requirements prior to discharge to the sewer system, predict concentrations of toxic compounds on sludges, and provide a general framework for estimating the removal of toxic compounds during activated sludge treatment.

  2. High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project.

    Science.gov (United States)

    Cao, Subing; Strong, Michael J; Wang, Xia; Moss, Walter N; Concha, Monica; Lin, Zhen; O'Grady, Tina; Baddoo, Melody; Fewell, Claire; Renne, Rolf; Flemington, Erik K

    2015-01-01

    Using high-throughput RNA sequencing data from 50 common lymphoma cell culture models from the Cancer Cell Line Encyclopedia project, we performed an unbiased global interrogation for the presence of a panel of 740 viruses and strains known to infect human and other mammalian cells. This led to the findings of previously identified infections by Epstein-Barr virus (EBV), Kaposi's sarcoma herpesvirus (KSHV), and human T-lymphotropic virus type 1 (HTLV-1). In addition, we also found a previously unreported infection of one cell line (DEL) with a murine leukemia virus. High expression of murine leukemia virus (MuLV) transcripts was observed in DEL cells, and we identified four transcriptionally active integration sites, one being in the TNFRSF6B gene. We also found low levels of MuLV reads in a number of other cell lines and provided evidence suggesting cross-contamination during sequencing. Analysis of HTLV-1 integrations in two cell lines, HuT 102 and MJ, identified 14 and 66 transcriptionally active integration sites with potentially activating integrations in immune regulatory genes, including interleukin-15 (IL-15), IL-6ST, STAT5B, HIVEP1, and IL-9R. Although KSHV and EBV do not typically integrate into the genome, we investigated a previously identified integration of EBV into the BACH2 locus in Raji cells. This analysis identified a BACH2 disruption mechanism involving splice donor sequestration. Through viral gene expression analysis, we detected expression of stable intronic RNAs from the EBV BamHI W repeats that may be part of long transcripts spanning the repeat region. We also observed transcripts at the EBV vIL-10 locus exclusively in the Hodgkin's lymphoma cell line, Hs 611.T, the expression of which were uncoupled from other lytic genes. Assessment of the KSHV viral transcriptome in BCP-1 cells showed expression of the viral immune regulators, K2/vIL-6, K4/vIL-8-like vCCL1, and K5/E2-ubiquitin ligase 1 that was significantly higher than expression of

  3. Uncertain nest fates in songbird studies and variation in Mayfield estimation

    Science.gov (United States)

    Manolis, J.C.; Andersen, D.E.; Cuthbert, F.J.

    2000-01-01

    Determining whether nesting attempts are successful can be difficult. Yet, current protocols for estimating nesting success do not address how uncertain nest fates should be handled. We examined the problem of nest-fate uncertainty as it relates to Mayfield estimation of nesting success and in analyses of factors that influence success. We used data from Minnesota to illustrate the potential effect of uncertain fate; 40% of Ovenbird (Seiurus aurocapillus; n = 127) nests and 30% of Least Flycatcher (Empidonax minimus; n = 144) nests had uncertain fates. How this uncertainty is incorporated into Mayfield estimates of success varied widely among researchers. In a survey of researchers who use the Mayfield method, 9 of 22 respondents (of 40 contacted) excluded nests with uncertain fate. Excluding uncertain fates is counter to how Mayfield first described his estimator and can result in severe downward bias. The remaining respondents (59%) included nests with uncertain fate but varied in how they terminated the exposure period. We developed a simulation model that calculated Mayfield estimates using different approaches and compared them with a known rate of nesting success. Magnitude of bias in Mayfield estimates varied considerably in our simulations. The approach with the least bias terminated exposure with the last observed active date for nests with uncertain fate, and with the midpoint between last observed active and first observed inactive dates for nests with known fate. In addition, information necessary to interpret and compare Mayfield estimates often is not reported. These values, including variance estimates and the period lengths used to estimate survival rates, should be reported with Mayfield estimates. Finally, nest fate is commonly used as a categorical variable in studies of factors affecting nesting success. In this approach, however, nests with uncertain fate must be excluded. An alternative approach is Cox regression, which incorporates nests with

  4. Assessing the transport and fate of bioengineered microorganisms in the environment

    Energy Technology Data Exchange (ETDEWEB)

    Barnthouse, L.W.; Palumbo, A.V.

    1985-01-01

    We review the methods currently available for quantifying the transport and fate of microbes in atmospheric and aqueous media and assess their adequacy for purposes of risk assessment. We review the literature on transport and fate of microorganisms, including studies of: (1) pathways of migration, (2) the survival of microorganisms during transport and fate. In addition, we review the transport and fate models that have been used in environmental risk assessments for radionuclides and toxic chemicals and evaluate their applicability to the problem of assessing environmental risks of bioengineered microorganisms.

  5. Dung longevity influences the fate of endozoochorically dispersed seeds in forest ecosystems

    National Research Council Canada - National Science Library

    Jaroszewicz, Bogdan; Piroznikow, Ewa

    2011-01-01

    ... (studied in the field) effects of endozoochory. The influence of environmental conditions on the fate of endozoochorically dispersed seeds and subsequent plant establishment is still not well understood...

  6. Fates of Chemical Elements in Biomass during Its Pyrolysis.

    Science.gov (United States)

    Liu, Wu-Jun; Li, Wen-Wei; Jiang, Hong; Yu, Han-Qing

    2017-05-10

    Biomass is increasingly perceived as a renewable resource rather than as an organic solid waste today, as it can be converted to various chemicals, biofuels, and solid biochar using modern processes. In the past few years, pyrolysis has attracted growing interest as a promising versatile platform to convert biomass into valuable resources. However, an efficient and selective conversion process is still difficult to be realized due to the complex nature of biomass, which usually makes the products complicated. Furthermore, various contaminants and inorganic elements (e.g., heavy metals, nitrogen, phosphorus, sulfur, and chlorine) embodied in biomass may be transferred into pyrolysis products or released into the environment, arousing environmental pollution concerns. Understanding their behaviors in biomass pyrolysis is essential to optimizing the pyrolysis process for efficient resource recovery and less environmental pollution. However, there is no comprehensive review so far about the fates of chemical elements in biomass during its pyrolysis. Here, we provide a critical review about the fates of main chemical elements (C, H, O, N, P, Cl, S, and metals) in biomass during its pyrolysis. We overview the research advances about the emission, transformation, and distribution of elements in biomass pyrolysis, discuss the present challenges for resource-oriented conversion and pollution abatement, highlight the importance and significance of understanding the fate of elements during pyrolysis, and outlook the future development directions for process control. The review provides useful information for developing sustainable biomass pyrolysis processes with an improved efficiency and selectivity as well as minimized environmental impacts, and encourages more research efforts from the scientific communities of chemistry, the environment, and energy.

  7. MATH5 controls the acquisition of multiple retinal cell fates

    Directory of Open Access Journals (Sweden)

    Feng Liang

    2010-11-01

    Full Text Available Abstract Math5-null mutation results in the loss of retinal ganglion cells (RGCs and in a concurrent increase of amacrine and cone cells. However, it remains unclear whether there is a cell fate switch of Math5-lineage cells in the absence of Math5 and whether MATH5 cell-autonomously regulates the differentiation of the above retinal neurons. Here, we performed a lineage analysis of Math5-expressing cells in developing mouse retinas using a conditional GFP reporter (Z/EG activated by a Math5-Cre knock-in allele. We show that during normal retinogenesis, Math5-lineage cells mostly develop into RGCs, horizontal cells, cone photoreceptors, rod photoreceptors, and amacrine cells. Interestingly, amacrine cells of Math5-lineage cells are predominately of GABAergic, cholinergic, and A2 subtypes, indicating that Math5 plays a role in amacrine subtype specification. In the absence of Math5, more Math5-lineage cells undergo cell fate conversion from RGCs to the above retinal cell subtypes, and occasionally to cone-bipolar cells and Müller cells. This change in cell fate choices is accompanied by an up-regulation of NEUROD1, RXRγ and BHLHB5, the transcription factors essential for the differentiation of retinal cells other than RGCs. Additionally, loss of Math5 causes the failure of early progenitors to exit cell cycle and leads to a significant increase of Math5-lineage cells remaining in cell cycle. Collectively, these data suggest that Math5 regulates the generation of multiple retinal cell types via different mechanisms during retinogenesis.

  8. Building 235-F Goldsim Fate And Transport Model

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, G. A.; Phifer, M. A.

    2012-09-14

    Savannah River National Laboratory (SRNL) personnel, at the request of Area Completion Projects (ACP), evaluated In-Situ Disposal (ISD) alternatives that are under consideration for deactivation and decommissioning (D&D) of Building 235-F and the Building 294-2F Sand Filter. SRNL personnel developed and used a GoldSim fate and transport model, which is consistent with Musall 2012, to evaluate relative to groundwater protection, ISD alternatives that involve either source removal and/or the grouting of portions or all of 235-F. This evaluation was conducted through the development and use of a Building 235-F GoldSim fate and transport model. The model simulates contaminant release from four 235-F process areas and the 294-2F Sand Filter. In addition, it simulates the fate and transport through the vadose zone, the Upper Three Runs (UTR) aquifer, and the Upper Three Runs (UTR) creek. The model is designed as a stochastic model, and as such it can provide both deterministic and stochastic (probabilistic) results. The results show that the median radium activity concentrations exceed the 5 ?Ci/L radium MCL at the edge of the building for all ISD alternatives after 10,000 years, except those with a sufficient amount of inventory removed. A very interesting result was that grouting was shown to basically have minimal effect on the radium activity concentration. During the first 1,000 years grouting may have some small positive benefit relative to radium, however after that it may have a slightly deleterious effect. The Pb-210 results, relative to its 0.06 ?Ci/L PRG, are essentially identical to the radium results, but the Pb-210 results exhibit a lesser degree of exceedance. In summary, some level of inventory removal will be required to ensure that groundwater standards are met.

  9. Linking Microbial Activity with Arsenic Fate during Cow Dung Disposal of Arsenic-Bearing Wastes

    Science.gov (United States)

    Clancy, T. M.; Reddy, R.; Tan, J.; Hayes, K. F.; Raskin, L.

    2014-12-01

    To address widespread arsenic contamination of drinking water sources numerous technologies have been developed to remove arsenic. All technologies result in the production of an arsenic-bearing waste that must be evaluated and disposed in a manner to limit the potential for environmental release and human exposure. One disposal option that is commonly recommended for areas without access to landfills is the mixing of arsenic-bearing wastes with cow dung. These recommendations are made based on the ability of microorganisms to create volatile arsenic species (including mono-, di-, and tri-methylarsine gases) to be diluted in the atmosphere. However, most studies of environmental microbial communities have found only a small fraction (cow dung and arsenic-bearing wastes produced during drinking water treatment in West Bengal, India. Arsenic in gaseous, aqueous, and solid phases was measured. Consistent with previous reports, less than 0.02% of the total arsenic present was volatilized. A much higher amount (~5%) of the total arsenic was mobilized into the liquid phase. Through the application of molecular tools, including 16S rRNA sequencing and quantification of gene transcripts involved in methanogenesis, this study links microbial community activity with arsenic fate in potential disposal environments. These results illustrate that disposal of arsenic-bearing wastes by mixing with cow dung does not achieve its end goal of promoting arsenic volatilization but rather appears to increase arsenic mobilization in the aqueous phase, raising concerns with this approach.

  10. Fate of H2S during the cultivation of Chlorella sp. deployed for biogas upgrading.

    Science.gov (United States)

    González-Sánchez, Armando; Posten, Clemens

    2017-04-15

    The H2S may play a key role in the sulfur cycle among the biogas production by the anaerobic digestion of wastes and the biogas upgrading by a microalgae based technology. The biogas is upgraded by contacting with slightly alkaline aqueous microalgae culture, then CO2 and H2S are absorbed. The dissolved H2S could limit or inhibit the microalgae growth. This paper evaluated the role of dissolved H2S and other sulfured byproducts under prevailing biogas upgrading conditions using a microalgal technology. At initial stages of batch cultivation the growth of Chlorella sp. was presumably inhibited by dissolved H2S. After 2 days, the sulfides were oxidized mainly by oxic chemical reactions to sulfate, which was later rapidly assimilated by Chlorella sp., allowing high growing rates. The fate of H2S during the microalgae cultivation at pH > 8.5 was assessed by a mathematical model where the pentasulfide, thiosulfate and sulfite were firstly produced and converted finally to sulfate for posterior assimilation. Copyright © 2017 Elsevier Ltd. All rights reserved.

  11. Progress in the technology of nautical charting

    Digital Repository Service at National Institute of Oceanography (India)

    Joseph, A.

    stream_size 41 stream_content_type text/plain stream_name Encyclopedia_Microcomput_28_Suppl-7_2001_271.pdf.txt stream_source_info Encyclopedia_Microcomput_28_Suppl-7_2001_271.pdf.txt Content-Encoding ISO-8859-1 Content-Type text...

  12. Multiphase CFD modeling of nearfield fate of sediment plumes

    DEFF Research Database (Denmark)

    Saremi, Sina; Hjelmager Jensen, Jacob

    2014-01-01

    Disposal of dredged material and the overflow discharge during the dredging activities is a matter of concern due to the potential risks imposed by the plumes on surrounding marine environment. This gives rise to accurately prediction of the fate of the sediment plumes released in ambient waters....... The two-phase mixture solution based on the drift-flux method is evaluated for 3D simulation of material disposal and overflow discharge from the hoppers. The model takes into account the hindrance and resistance mechanisms in the mixture and is capable of describing the flow details within the plumes...... and gives excellent results when compared to experimental data....

  13. Fate and effects of veterinary antibiotics in soil.

    Science.gov (United States)

    Jechalke, Sven; Heuer, Holger; Siemens, Jan; Amelung, Wulf; Smalla, Kornelia

    2014-09-01

    Large amounts of veterinary antibiotics are applied worldwide to farm animals and reach agricultural fields by manure fertilization, where they might lead to an increased abundance and transferability of antibiotic-resistance determinants. In this review we discuss recent advances, limitations, and research needs in determining the fate of veterinary antibiotics and resistant bacteria applied with manure to soil, and their effects on the structure and function of soil microbial communities in bulk soils and the rhizosphere. The increased abundance and mobilization of antibiotic-resistance genes (ARGs) might contribute to the emergence of multi-resistant human pathogens that increasingly threaten the successful antibiotic treatment of bacterial infections.

  14. The ultimate fate of life in an accelerating universe

    Energy Technology Data Exchange (ETDEWEB)

    Freese, Katherine; Kinney, William H

    2003-04-10

    The ultimate fate of life in a universe with accelerated expansion is considered. Previous work [J.D. Barrow, F. Tipler, The Anthropic Cosmological Principle, Oxford Univ. Press, Oxford, 1986; L.M. Krauss, G.D. Starkman, Astrophys. J. 531 (2000) 22] showed that life cannot go on indefinitely in a universe dominated by a cosmological constant. In this Letter we consider instead other models of acceleration (including quintessence and Cardassian expansion). We find that it is possible in these cosmologies for life to persist indefinitely. As an example we study potentials of the form V{proportional_to}phi{sup n} and find the requirement n<-2.

  15. Metabolic fate of extracted glucose in normal human myocardium.

    OpenAIRE

    Wisneski, J A; Gertz, E W; Neese, R A; Gruenke, L D; D. L. Morris; Craig, J. C.

    1985-01-01

    Glucose is an important substrate for myocardial metabolism. This study was designed to determine the effect of circulating metabolic substrates on myocardial glucose extraction and to determine the metabolic fate of glucose in normal human myocardium. Coronary sinus and arterial catheters were placed in 23 healthy male volunteers. [6-14C]Glucose was infused as a tracer in 10 subjects. [6-14C]Glucose and [U-13C]lactate were simultaneously infused in the other 13 subjects. Simultaneous blood s...

  16. Fate of Yang-Mills black hole in early Universe

    Energy Technology Data Exchange (ETDEWEB)

    Nakonieczny, Lukasz; Rogatko, Marek [Institute of Physics Maria Curie-Sklodowska University 20-031 Lublin, pl. Marii Curie-Sklodowskiej 1 (Poland)

    2013-02-21

    According to the Big Bang Theory as we go back in time the Universe becomes progressively hotter and denser. This leads us to believe that the early Universe was filled with hot plasma of elementary particles. Among many questions concerning this phase of history of the Universe there are questions of existence and fate of magnetic monopoles and primordial black holes. Static solution of Einstein-Yang-Mills system may be used as a toy model for such a black hole. Using methods of field theory we will show that its existence and regularity depend crucially on the presence of fermions around it.

  17. Detection, Occurrence and Fate of Emerging Contaminants in Agricultural Environments.

    Science.gov (United States)

    Snow, Daniel D; Cassada, David A; Bartelt Hunt, Shannon L; Li, Xu; D'Alessio, Matteo; Zhang, Yun; Zhang, Yuping; Sallach, J Brett

    2016-10-01

    A total of 59 papers published in 2015 were reviewed ranging from detailed descriptions of analytical methods, to fate and occurrence studies, to ecological effects and sampling techniques for a wide variety of emerging contaminants likely to occur in agricultural environments. New methods and studies on veterinary pharmaceuticals, steroids, antibiotic resistance genes in agricultural environments continue to expand our knowledge base on the occurrence and potential impacts of these compounds. This review is divided into the following sections: Introduction, Analytical Methods, Steroid Hormones, Pharmaceutical Contaminants, Transformation Products, and "Antibiotic Resistance, Drugs, Bugs and Genes".

  18. Free Will, Predestination, and the Fate of the Ottoman Empire.

    Science.gov (United States)

    Menchinger, Ethan L

    2016-07-01

    Although European travelers to the Ottoman Empire often noted the inhabitants' "fatalism," historians have never seriously examined this intellectual phenomenon. Whether or not we can credit such sources, the testimony of seventeenth-and eighteenth-century Turkish and Arabic sources points to a robust debate over fate, free will, and predestination. What were the reasons behind these discussions? What issues were at stake? This article outlines the context and content of the debate. It then offers some observations about the wider significance of free will and predestination in the Ottoman intellectual universe - particularly their relation to early modern bureaucratic and military reform.

  19. The Fate of Exomoons in White Dwarf Planetary Systems

    CERN Document Server

    Payne, Matthew J; Gaensicke, Boris T; Holman, Matthew J

    2016-01-01

    Roughly 1000 white dwarfs are known to be polluted with planetary material, and the progenitors of this material are typically assumed to be asteroids. The dynamical architectures which perturb asteroids into white dwarfs are still unknown, but may be crucially dependent on moons liberated from parent planets during post-main-sequence gravitational scattering. Here, we trace the fate of these exomoons, and show that they more easily achieve deep radial incursions towards the white dwarf than do scattered planets. Consequently, moons are likely to play a significant role in white dwarf pollution, and in some cases may be the progenitors of the pollution itself.

  20. Understanding the fate of merging supermassive black holes

    CERN Document Server

    Campanelli, M

    2004-01-01

    Understanding the fate of merging supermassive black holes in galactic mergers, and the gravitational wave emission from this process, are important LISA science goals. To this end, we present results from numerical relativity simulations of binary black hole mergers using the so-called Lazarus approach to model gravitational radiation from these events. In particular, we focus here on some recent calculations of the final spin and recoil velocity of the remnant hole formed at the end of a binary black hole merger process, which may constraint the growth history of massive black holes at the core of galaxies and globular clusters.

  1. In Situ and Laboratory Studies on the Fate of Specific Organic Compounds in an Anerobic Landfill Leachate Plume, 1. Experimental Conditions and Fate of Phenolic Compounds

    DEFF Research Database (Denmark)

    Nielsen, Per Henning; Albrechtsen, Hans-Jørgen; Heron, Gorm;

    1995-01-01

    microcosm experiments performed and the results on the fate of 7 phenolic compounds. Part 2 of this series of papers, also published in this issue, presents the results on the fate of 8 aromatic compounds and 4 chlorinated aliphatic compounds. The redox conditions in the plume were characterized...... by in situ and laboratory experiments, both concerning redox conditions and the fate of the phenolic compounds. However, for phenol and 2,4-dichlorophenol, transformation was observed in some in situ experiments but not in the corresponding laboratory experiments. In some experiments, this could be explained...

  2. Future Jet Technologies, Part C

    Science.gov (United States)

    Gal-Or, Benjamin

    2013-06-01

    This updated, PART C REVIEW, covers the dangerous global spread of JS-stealth, drone technology [1-91], canard-free, stealth, new agile drones and the highly debated, 480 billion F-35 International Program as reported on March 13, 2013 to the U.S. Congress [92]. Due to serious design issues, spiraling high costs and years in delays, alternatives are analyzed here, depicted and proposed, mainly from the propulsion-design point of view. These include fleets of low-cost, stealth, jet-steered-drones mixed with non-stealthy, low-cost, ready-to-be-delivered, U.S. or European or Russian fighter aircraft. Can a few F-35s win against large fleets of stealth agile drones? To understand the dangers and critical issues involved, the author's own, past classified information is partly disclosed, while resorting to images in Figs. 2(a) and 2(b) taken from his book [2] and from Wikipedia, the "Free Encyclopedia", in all other images.

  3. Fugacity superposition: a new approach to dynamic multimedia fate modeling.

    Science.gov (United States)

    Hertwich, E G

    2001-08-01

    The fugacities, concentrations, or inventories of pollutants in environmental compartments as determined by multimedia environmental fate models of the Mackay type can be superimposed on each other. This is true for both steady-state (level III) and dynamic (level IV) models. Any problem in multimedia fate models with linear, time-invariant transfer and transformation coefficients can be solved through a superposition of a set of n independent solutions to a set of coupled, homogeneous first-order differential equations, where n is the number of compartments in the model. For initial condition problems in dynamic models, the initial inventories can be separated, e.g. by a compartment. The solution is obtained by adding the single-compartment solutions. For time-varying emissions, a convolution integral is used to superimpose solutions. The advantage of this approach is that the differential equations have to be solved only once. No numeric integration is required. Alternatively, the dynamic model can be simplified to algebraic equations using the Laplace transform. For time-varying emissions, the Laplace transform of the model equations is simply multiplied with the Laplace transform of the emission profile. It is also shown that the time-integrated inventories of the initial conditions problems are the same as the inventories in the steady-state problem. This implies that important properties of pollutants such as potential dose, persistence, and characteristic travel distance can be derived from the steady state.

  4. Characteristics and Fate of Systemic Artery Aneurysm after Kawasaki Disease.

    Science.gov (United States)

    Hoshino, Shinsuke; Tsuda, Etsuko; Yamada, Osamu

    2015-07-01

    To determine the long-term outcome of systemic artery aneurysms (SAAs) after Kawasaki disease (KD). We investigated the characteristics and the fate of SAAs in 20 patients using medical records and angiograms. The age of onset of KD ranged from 1 month to 20 months. The interval from the onset of KD to the latest angiogram ranged from 16 months to 24 years. The regression rate of peripheral artery aneurysm and the frequency of stenotic lesions were analyzed by the Kaplan-Meier method in 11 patients who had undergone initial angiography within 4 months. The mean duration of fever was 24 ± 12 days. All 20 patients had at least 1 symmetric pair of aneurysms in bilateral peripheral arteries, and 16 patients had multiple SAAs. The distributions of SAAs was as follows: brachial artery, 30; common iliac artery, 20; internal iliac artery, 21; abdominal aortic aneurysm, 7; and others, 29. The frequencies of regression of SAA and of the occurrence of stenotic lesions at 20 years after the onset of KD were 51% and 25%, respectively (n = 42). The diameter of all SAAs in the acute phase leading to stenotic lesions in the late period was >10 mm. SAAs occurred symmetrically and were multiple in younger infants and those with severe acute vasculitis. The fate of SAAs resembles that of coronary artery aneurysms, and depends on the diameter during the acute phase. Larger SAAs can lead to stenotic lesions in the late period. Copyright © 2015 Elsevier Inc. All rights reserved.

  5. Deciphering the Intracellular Fate of Propionibacterium acnes in Macrophages

    Directory of Open Access Journals (Sweden)

    Natalie Fischer

    2013-01-01

    Full Text Available Propionibacterium acnes is a Gram-positive bacterium that colonizes various niches of the human body, particularly the sebaceous follicles of the skin. Over the last years a role of this common skin bacterium as an opportunistic pathogen has been explored. Persistence of P. acnes in host tissue has been associated with chronic inflammation and disease development, for example, in prostate pathologies. This study investigated the intracellular fate of P. acnes in macrophages after phagocytosis. In a mouse model of P. acnes-induced chronic prostatic inflammation, the bacterium could be detected in prostate-infiltrating macrophages at 2 weeks postinfection. Further studies performed in the human macrophage cell line THP-1 revealed intracellular survival and persistence of P. acnes but no intracellular replication or escape from the host cell. Confocal analyses of phagosome acidification and maturation were performed. Acidification of P. acnes-containing phagosomes was observed at 6 h postinfection but then lost again, indicative of cytosolic escape of P. acnes or intraphagosomal pH neutralization. No colocalization with the lysosomal markers LAMP1 and cathepsin D was observed, implying that the P. acnes-containing phagosome does not fuse with lysosomes. Our findings give first insights into the intracellular fate of P. acnes; its persistency is likely to be important for the development of P. acnes-associated inflammatory diseases.

  6. Cell fate regulation governed by a repurposed bacterial histidine kinase.

    Directory of Open Access Journals (Sweden)

    W Seth Childers

    2014-10-01

    Full Text Available One of the simplest organisms to divide asymmetrically is the bacterium Caulobacter crescentus. The DivL pseudo-histidine kinase, positioned at one cell pole, regulates cell-fate by controlling the activation of the global transcription factor CtrA via an interaction with the response regulator (RR DivK. DivL uniquely contains a tyrosine at the histidine phosphorylation site, and can achieve these regulatory functions in vivo without kinase activity. Determination of the DivL crystal structure and biochemical analysis of wild-type and site-specific DivL mutants revealed that the DivL PAS domains regulate binding specificity for DivK∼P over DivK, which is modulated by an allosteric intramolecular interaction between adjacent domains. We discovered that DivL's catalytic domains have been repurposed as a phosphospecific RR input sensor, thereby reversing the flow of information observed in conventional histidine kinase (HK-RR systems and coupling a complex network of signaling proteins for cell-fate regulation.

  7. Transport, behavior, and fate of volatile organic compounds in streams

    Science.gov (United States)

    Rathbun, R.E.

    2000-01-01

    Volatile organic compounds (VOCs) are compounds with chemical and physical properties that allow the compounds to move freely between the water and air phases of the environment. VOCs are widespread in the environment because of this mobility. Many VOCs have properties that make them suspected or known hazards to the health of humans and aquatic organisms. Consequently, understanding the processes affecting the concentration and distribution of VOCs in the environment is necessary. The transport, behavior, and fate of VOCs in streams are determined by combinations of chemical, physical, and biological processes. These processes are volatilization, absorption, wet and dry deposition, microbial degradation, sorption, hydrolysis, aquatic photolysis, oxidation, chemical reaction, biocon-centration, advection, and dispersion. The relative importance of each of these processes depends on the characteristics of the VOC and the stream. The U.S. Geological Survey National Water-Quality Assessment Program selected 55 VOCs for study. This article reviews the characteristics of the various processes that could affect the transport, behavior, and fate of these VOCs in streams.

  8. Glyphosate fate in soils when arriving in plant residues.

    Science.gov (United States)

    Mamy, Laure; Barriuso, Enrique; Gabrielle, Benoît

    2016-07-01

    A significant fraction of pesticides sprayed on crops may be returned to soils via plant residues, but its fate has been little documented. The objective of this work was to study the fate of glyphosate associated to plants residues. Oilseed rape was used as model plant using two lines: a glyphosate-tolerant (GT) line and a non-GT one, considered as a crucifer weed. The effects of different fragmentation degrees and placements in soil of plant residues were tested. A control was set up by spraying glyphosate directly on the soil. The mineralization of glyphosate in soil was slower when incorporated into plant residues, and the amounts of extractable and non-extractable glyphosate residues increased. Glyphosate availability for mineralization increased when the size of plant residues decreased, and as the distribution of plant residues in soil was more homogeneous. After 80 days of soil incubation, extractable (14)C-residues mostly involved one metabolite of glyphosate (AMPA) but up to 2.6% of initial (14)C was still extracted from undecayed leaves as glyphosate. Thus, the trapping of herbicides in plant materials provided a protection against degradation, and crops residues returns may increase the persistence of glyphosate in soils. This pattern appeared more pronounced for GT crops, which accumulated more non-degraded glyphosate in their tissues.

  9. Molecular trajectories leading to the alternative fates of duplicate genes.

    Directory of Open Access Journals (Sweden)

    Michael Marotta

    Full Text Available Gene duplication generates extra gene copies in which mutations can accumulate without risking the function of pre-existing genes. Such mutations modify duplicates and contribute to evolutionary novelties. However, the vast majority of duplicates appear to be short-lived and experience duplicate silencing within a few million years. Little is known about the molecular mechanisms leading to these alternative fates. Here we delineate differing molecular trajectories of a relatively recent duplication event between humans and chimpanzees by investigating molecular properties of a single duplicate: DNA sequences, gene expression and promoter activities. The inverted duplication of the Glutathione S-transferase Theta 2 (GSTT2 gene had occurred at least 7 million years ago in the common ancestor of African great apes and is preserved in chimpanzees (Pan troglodytes, whereas a deletion polymorphism is prevalent in humans. The alternative fates are associated with expression divergence between these species, and reduced expression in humans is regulated by silencing mutations that have been propagated between duplicates by gene conversion. In contrast, selective constraint preserved duplicate divergence in chimpanzees. The difference in evolutionary processes left a unique DNA footprint in which dying duplicates are significantly more similar to each other (99.4% than preserved ones. Such molecular trajectories could provide insights for the mechanisms underlying duplicate life and death in extant genomes.

  10. Fate of antibiotics during municipal water recycling treatment processes.

    Science.gov (United States)

    Le-Minh, N; Khan, S J; Drewes, J E; Stuetz, R M

    2010-08-01

    Municipal water recycling processes are potential human and environmental exposure routes for low concentrations of persistent antibiotics. While the implications of such exposure scenarios are unknown, concerns have been raised regarding the possibility that continuous discharge of antibiotics to the environment may facilitate the development or proliferation of resistant strains of bacteria. As potable and non-potable water recycling schemes are continuously developed, it is imperative to improve our understanding of the fate of antibiotics during conventional and advanced wastewater treatment processes leading to high-quality water reclamation. This review collates existing knowledge with the aim of providing new insight to the influence of a wide range of treatment processes to the ultimate fate of antibiotics during conventional and advanced wastewater treatment. Although conventional biological wastewater treatment processes are effective for the removal of some antibiotics, many have been reported to occur at 10-1000 ng L(-1) concentrations in secondary treated effluents. These include beta-lactams, sulfonamides, trimethoprim, macrolides, fluoroquinolones, and tetracyclines. Tertiary and advanced treatment processes may be required to fully manage environmental and human exposure to these contaminants in water recycling schemes. The effectiveness of a range of processes including tertiary media filtration, ozonation, chlorination, UV irradiation, activated carbon adsorption, and NF/RO filtration has been reviewed and, where possible, semi-quantitative estimations of antibiotics removals have been provided.

  11. Fate of polycyclic aromatic hydrocarbons in the environment

    Energy Technology Data Exchange (ETDEWEB)

    Carlsen, L.; Lassen, P.; Pritzl, G.; Erecius Poulsen, M. [National Environmental Research Inst., Dept. of Environmental Chemistry (Denmark); Willumsen, P.A.; Karlson, U. [National Environmental Research Inst., Dept. of Marine Ecology and Microbiology (Denmark)

    1997-05-01

    The environmental fate of polycyclic aromatic hydrocarbons (PAH`s) is reviewed in order to elucidate the actual chemical, physico-chemical and microbiological processes which determine the behaviour of PAH`s in the environment. The review focusses on the terrestrial environment, where the fate of PAH`s is determined by an interplay between several soil such as pH, redox conditions, organic matter content and microbial biomass. The report summarizes the sources for PAH contamination, a wide range of reactions determining the availability of PAH`s as well as the microbiology of PAH degradation. Thus, processes controlling the availability of PAH`s, such as diffusion/dispersion/convection, solubility, evaporation and sorption/desorption, are reviewed with special emphasis on parameters as temperature, ionic strength and the possible presence of organic co-solutes or surfactants. Attention is given to the role of naturally occuring organics such as humic material. A theoretical study, based on calculations using the COLUMN2 computer code elucidates the migration potential of PAH`s. The microbiology of PAH`s is reviewed with respect to biodegradation of PAH`s, including surfactant-enhaced degradation, and bioavailability. The method for analysis of PAH`s in soils based on Soxhlet extraction of the samples followed by quantification using gas chromatography combined with mass spectrometry is described. (EG) 147 refs.

  12. Yap and Taz regulate retinal pigment epithelial cell fate

    Science.gov (United States)

    Miesfeld, Joel B.; Gestri, Gaia; Clark, Brian S.; Flinn, Michael A.; Poole, Richard J.; Bader, Jason R.; Besharse, Joseph C.; Wilson, Stephen W.; Link, Brian A.

    2015-01-01

    The optic vesicle comprises a pool of bi-potential progenitor cells from which the retinal pigment epithelium (RPE) and neural retina fates segregate during ocular morphogenesis. Several transcription factors and signaling pathways have been shown to be important for RPE maintenance and differentiation, but an understanding of the initial fate specification and determination of this ocular cell type is lacking. We show that Yap/Taz-Tead activity is necessary and sufficient for optic vesicle progenitors to adopt RPE identity in zebrafish. A Tead-responsive transgene is expressed within the domain of the optic cup from which RPE arises, and Yap immunoreactivity localizes to the nuclei of prospective RPE cells. yap (yap1) mutants lack a subset of RPE cells and/or exhibit coloboma. Loss of RPE in yap mutants is exacerbated in combination with taz (wwtr1) mutant alleles such that, when Yap and Taz are both absent, optic vesicle progenitor cells completely lose their ability to form RPE. The mechanism of Yap-dependent RPE cell type determination is reliant on both nuclear localization of Yap and interaction with a Tead co-factor. In contrast to loss of Yap and Taz, overexpression of either protein within optic vesicle progenitors leads to ectopic pigmentation in a dosage-dependent manner. Overall, this study identifies Yap and Taz as key early regulators of RPE genesis and provides a mechanistic framework for understanding the congenital ocular defects of Sveinsson's chorioretinal atrophy and congenital retinal coloboma. PMID:26209646

  13. Delayed transition to new cell fates during cellular reprogramming.

    Science.gov (United States)

    Cheng, Xianrui; Lyons, Deirdre C; Socolar, Joshua E S; McClay, David R

    2014-07-15

    In many embryos specification toward one cell fate can be diverted to a different cell fate through a reprogramming process. Understanding how that process works will reveal insights into the developmental regulatory logic that emerged from evolution. In the sea urchin embryo, cells at gastrulation were found to reprogram and replace missing cell types after surgical dissections of the embryo. Non-skeletogenic mesoderm (NSM) cells reprogrammed to replace missing skeletogenic mesoderm cells and animal caps reprogrammed to replace all endomesoderm. In both cases evidence of reprogramming onset was first observed at the early gastrula stage, even if the cells to be replaced were removed earlier in development. Once started however, the reprogramming occurred with compressed gene expression dynamics. The NSM did not require early contact with the skeletogenic cells to reprogram, but the animal cap cells gained the ability to reprogram early in gastrulation only after extended contact with the vegetal halves prior to that time. If the entire vegetal half was removed at early gastrula, the animal caps reprogrammed and replaced the vegetal half endomesoderm. If the animal caps carried morpholinos to either hox11/13b or foxA (endomesoderm specification genes), the isolated animal caps failed to reprogram. Together these data reveal that the emergence of a reprogramming capability occurs at early gastrulation in the sea urchin embryo and requires activation of early specification components of the target tissues.

  14. Fate and effect of hexabromocyclododecane in the environment

    Energy Technology Data Exchange (ETDEWEB)

    Hunziker, R.W.; Friederich, U. [Dow Europe, GmbH, Horgen (Switzerland); MacGregor, J.A.; Desjardins, D. [Wildlife International, Ltd., Easton, MD (United States); Ariano, J. [Great Lakes Chemical Corp., West Lafayette, IN (United States); Gonsior, S.

    2004-09-15

    Hexabromocyclododecane (HBCD) is used as a flame retardant mainly in building insulation composed of extruded or expanded polystyrene foam. A minor use is in flame retardant back-coats of some upholstery textiles. Sales in Europe are estimated to be 9000 t/yr. HBCD has been detected in a number of environmental samples mainly in sediment of urban areas. In a series of acute aquatic toxicity tests, no effect was exhibited at concentrations equal to or below the water solubility of the technical product which consists of ca. 85% {gamma} diastereomer. However, considerable bioconcentration has been reported (log BCF=4). In recent work it has been reported that a shift occurs along the food chain, from {gamma}, the predominant isomer in the technical product, to the {alpha} isomer. HBCD is very hydrophobic and not readily biodegradable, and has been presumed to be persistent in the environment. It is therefore important to have a good understanding of the environmental fate and lifetime of all HBCD isomers. This paper describes new findings on the water solubility of HBCD with respect to its 3 individual isomers, presents results on the acute toxicity in the marine alga Skeletonema costatum at the limit of solubility of all individual isomers and shows first data of an ongoing fate study with {sup 14}C-HBCD where the primary biodegradation of the individual metabolites is differentiated.

  15. Concentrations and fate of decamethylcyclopentasiloxane (D(5)) in the atmosphere.

    Science.gov (United States)

    McLachlan, Michael S; Kierkegaard, Amelie; Hansen, Kaj M; van Egmond, Roger; Christensen, Jesper H; Skjøth, Carsten A

    2010-07-15

    Decamethylcyclopentasiloxane (D(5)) is a volatile compound used in personal care products that is released to the atmosphere in large quantities. Although D(5) is currently under consideration for regulation, there have been no field investigations of its atmospheric fate. We employed a recently developed, quality assured method to measure D(5) concentration in ambient air at a rural site in Sweden. The samples were collected with daily resolution between January and June 2009. The D(5) concentration ranged from 0.3 to 9 ng m(-3), which is 1-3 orders of magnitude lower than previous reports. The measured data were compared with D(5) concentrations predicted using an atmospheric circulation model that included both OH radical and D(5) chemistry. The model was parametrized using emissions estimates and physical chemical properties determined in laboratory experiments. There was good agreement between the measured and modeled D(5) concentrations. The results show that D(5) is clearly subject to long-range atmospheric transport, but that it is also effectively removed from the atmosphere via phototransformation. Atmospheric deposition has little influence on the atmospheric fate. The good agreement between the model predictions and the field observations indicates that there is a good understanding of the major factors governing D(5) concentrations in the atmosphere.

  16. Fate of nano- and microplastic in freshwater systems: A modeling study

    NARCIS (Netherlands)

    Besseling, Ellen; Quik, Joris T.K.; Sun, Muzhi; Koelmans, Bart

    2017-01-01

    Riverine transport to the marine environment is an important pathway for microplastic. However, information on fate and transport of nano- and microplastic in freshwater systems is lacking. Here we present scenario studies on the fate and transport of nano-to millimetre sized spherical particles lik

  17. Simulating the fate of fall- and spring-applied poultry litter nitrogen in corn production

    Science.gov (United States)

    Monitoring the fate of N derived from manures applied to fertilize crops is difficult, time consuming, and relatively expensive. But computer simulation models can help understand the interactions among various N processes in the soil-plant system and determine the fate of applied N. The RZWQM2 was ...

  18. Towards validation of the NanoDUFLOW nanoparticle fate model for the river Dommel, The Netherlands

    NARCIS (Netherlands)

    Klein, de J.J.M.; Quik, J.T.K.; Bauerlein, P.; Koelmans, A.A.

    2016-01-01

    It is generally acknowledged that fate models for engineered nanoparticles (ENPs) hardly can be validated, given present limitations in analytical methods available for ENPs. Here we report on progress towards validation of the spatially resolved hydrological ENP fate model NanoDUFLOW, by comparing

  19. EVALUATION OF THE STATE-OF-THE-ART CONTAMINATED SEDIMENT TRANSPORT AND FATE MODELING SYSTEM

    Science.gov (United States)

    Modeling approaches for evaluating the transport and fate of sediment and associated contaminants are briefly reviewed. The main emphasis is on: 1) the application of EFDC (Environmental Fluid Dynamics Code), the state-of-the-art contaminated sediment transport and fate public do...

  20. Modeling Nitrogen Fate and Transport at the Sediment-Water Interface

    Science.gov (United States)

    Diffusive mass transfer at media interfaces exerts control on the fate and transport of pollutants originating from agricultural and urban landscapes and affects the con-ditions of water bodies. Diffusion is essentially a physical process affecting the distribution and fate of va...

  1. Fate of nano- and microplastic in freshwater systems: A modeling study

    NARCIS (Netherlands)

    Besseling, Ellen; Quik, Joris T.K.; Sun, Muzhi; Koelmans, Bart

    2017-01-01

    Riverine transport to the marine environment is an important pathway for microplastic. However, information on fate and transport of nano- and microplastic in freshwater systems is lacking. Here we present scenario studies on the fate and transport of nano-to millimetre sized spherical particles lik

  2. MEASURED CONCENTRATIONS OF HERBICIDES AND MODEL PREDICTIONS OF ATRAZINE FATE IN THE PATUXENT RIVER ESTUARY

    Science.gov (United States)

    McConnell, Laura L., Jennifer A. Harman-Fetcho and James D. Hagy, III. 2004. Measured Concentrations of Herbicides and Model Predictions of Atrazine Fate in the Patuxent River Estuary. J. Environ. Qual. 33(2):594-604. (ERL,GB X1051). The environmental fate of herbicides i...

  3. Oncogene-Induced Changes in Mammary Cell Fate and EMT in Breast Tumorigenesis

    Science.gov (United States)

    2015-04-01

    Release; Distribution Unlimited 13. SUPPLEMENTARY NOTES 14. ABSTRACT Basal-like/ triple negative breast cancers (TNBCs) are characterized by...24 4 1. INTRODUCTION: Basal-like/ triple negative breast cancers (TNBCs) are characterized by distinctive morphologic, genetic, and clinical features...with tumor initiation and cell fate markers. 2. KEYWORDS: IGF1R, triple - negative breast cancer, luminal, myoepithelial, cell fate 3. ACCOMPLISHMENTS

  4. Fate of Mercury in Synthetic Gypsum Used for Wallboard Production

    Energy Technology Data Exchange (ETDEWEB)

    Jessica Marshall Sanderson

    2006-06-01

    This report presents and discusses results from Task 5 of the study ''Fate of Mercury in Synthetic Gypsum Used for Wallboard Production,'' performed at a full-scale commercial wallboard plant. Synthetic gypsum produced by wet flue gas desulfurization (FGD) systems on coal-fired power plants is commonly used in the manufacture of wallboard. The FGD process is used to control the sulfur dioxide emissions which would result in acid rain if not controlled. This practice has long benefited the environment by recycling the FGD gypsum byproduct, which is becoming available in increasing quantities, decreasing the need to landfill this material, and increasing the sustainable design of the wallboard product. However, new concerns have arisen as recent mercury control strategies developed for power plants involve the capture of mercury in FGD systems. The objective of this study is to determine whether any mercury is released into the atmosphere when the synthetic gypsum material is used as a feedstock for wallboard production. The project is being co-funded by the U.S. DOE National Energy Technology Laboratory (Cooperative Agreement DE-FC26-04NT42080), USG Corporation, and EPRI. USG Corporation is the prime contractor, and URS Group is a subcontractor. The project scope includes five discrete tasks, each conducted at various USG wallboard plants using synthetic gypsum from different FGD systems. The five tasks were to include (1) a baseline test, then variations representing differing power plant (2) emissions control configurations, (3) treatment of fine gypsum particles, (4) coal types, and (5) FGD reagent types. However, Task 5, which was to evaluate gypsum produced from an alternate FGD reagent, could not be conducted as planned. Instead, Task 5 was conducted at conditions similar to a previous task, Task 3, although with gypsum from an alternate FGD system. In this project, process stacks in the wallboard plant have been sampled using the Ontario

  5. Fate of Mercury in Synthetic Gypsum Used for Wallboard Production

    Energy Technology Data Exchange (ETDEWEB)

    Jessica Sanderson

    2007-12-31

    This report presents and discusses results from the project 'Fate of Mercury in Synthetic Gypsum Used for Wallboard Production', performed at five different full-scale commercial wallboard plants. Synthetic gypsum produced by wet flue gas desulfurization (FGD) systems on coal-fired power plants is commonly used in the manufacture of wallboard. This practice has long benefited the environment by recycling the FGD gypsum byproduct, which is becoming available in increasing quantities, decreasing the need to landfill this material, and increasing the sustainable design of the wallboard product. However, new concerns have arisen as recent mercury control strategies involve the capture of mercury in FGD systems. The objective of this study has been to determine whether any mercury is released into the atmosphere at wallboard manufacturing plants when the synthetic gypsum material is used as a feedstock for wallboard production. The project has been co-funded by the U.S. DOE National Energy Technology Laboratory (Cooperative Agreement DE-FC26-04NT42080), USG Corporation, and EPRI. USG Corporation is the prime contractor, and URS Group is a subcontractor. The project scope included seven discrete tasks, each including a test conducted at various USG wallboard plants using synthetic gypsum from different wet FGD systems. The project was originally composed of five tasks, which were to include (1) a base-case test, then variations representing differing power plant: (2) emissions control configurations, (3) treatment of fine gypsum particles, (4) coal types, and (5) FGD reagent types. However, Task 5,could not be conducted as planned and instead was conducted at conditions similar to Task 3. Subsequently an opportunity arose to test gypsum produced from the Task 5 FGD system, but with an additive expected to impact the stability of mercury, so Task 6 was added to the project. Finally, Task 7 was added to evaluate synthetic gypsum produced at a power plant from an

  6. Fate of Mercury in Synthetic Gypsum Used for Wallboard Production

    Energy Technology Data Exchange (ETDEWEB)

    Jessica Sanderson; Gary M. Blythe; Mandi Richardson

    2006-12-01

    This report presents and discusses results from Task 6 of the study 'Fate of Mercury in Synthetic Gypsum Used for Wallboard Production,' performed at a full-scale commercial wallboard plant. Synthetic gypsum produced by wet flue gas desulfurization (FGD) systems on coal-fired power plants is commonly used in the manufacture of wallboard. This practice has long benefited the environment by recycling the FGD gypsum byproduct, which is becoming available in increasing quantities, decreasing the need to landfill this material, and increasing the sustainable design of the wallboard product. However, new concerns have arisen as recent mercury control strategies involve the capture of mercury in FGD systems. The objective of this study is to determine whether any mercury is released into the atmosphere when the synthetic gypsum material is used as a feedstock for wallboard production. The project is being co-funded by the U.S. DOE National Energy Technology Laboratory (Cooperative Agreement DE-FC26-04NT42080), USG Corporation, and EPRI. USG Corporation is the prime contractor, and URS Group is a subcontractor. The project scope now includes six discrete tasks, each conducted at various USG wallboard plants using synthetic gypsum from different FGD systems. The project was originally composed of five tasks, which were to include (1) a baseline test, then variations representing differing power plant: (2) emissions control configurations, (3) treatment of fine gypsum particles, (4) coal types, and (5) FGD reagent types. However, Task 5, which was to include testing with an alternate FGD reagent, could not be conducted as planned. Instead, Task 5 was conducted at conditions similar to Task 3, although with gypsum from an alternate FGD system. Subsequent to conducting Task 5 under these revised conditions, an opportunity arose to test gypsum produced at the same FGD system, but with an additive (Degussa Corporation's TMT-15) being used in the FGD system. TMT-15

  7. The Oxford Encyclopedia of Archaeology in the Near East (Prepared Under the Auspices of the American Schools of Oriental Research, edited by Eric M. Meters, Oxford University Press, New York

    Directory of Open Access Journals (Sweden)

    Douglas R. Givens

    1997-05-01

    Full Text Available Like many of the endeavors by The Oxford University Press in the history of archaeology, The Oxford Encyclopedia of Archaeology in the Near East is one of the most important compendium's of information comprising the history of Near Eastern Archaeology in recent time. Eric M. Meyers (Professor of Religion and Archaeology, Duke University, the Editor in Chief of the volume series, has done a masterful job of bringing together of wide variety of site information and biographical synposes of Near Eastern archaeolo­gists into a series of five volumes which are not only "user friendly" but "worth their weight in gold" for scholars and interested readers of the history of Near Eastern Archaeology. The wealth of information at the fingertips of the prospective researcher or interested reader is enormous. Although vast in its scope, the user of the volumes will find it easily accessible and of true value as a research tool.

  8. The Environmental Fate Simulator: A tool for predicting the degradation pathways of organic chemicals in groundwater aquifers

    Science.gov (United States)

    Development of the Environmental Fate Simulator (EFS): • High throughput computational system for providing molecular and environmental descriptors for consumption by EF&T models Requires:  Knowledge of the process science controlling chemical fate and transport  The abil...

  9. The Environmental Fate Simulator: A tool for predicting the degradation pathways of organic chemicals in groundwater aquifers

    Science.gov (United States)

    Development of the Environmental Fate Simulator (EFS): • High throughput computational system for providing molecular and environmental descriptors for consumption by EF&T models Requires:  Knowledge of the process science controlling chemical fate and transport  The abil...

  10. LACHESIS restricts gametic cell fate in the female gametophyte of Arabidopsis.

    Directory of Open Access Journals (Sweden)

    Rita Gross-Hardt

    2007-03-01

    Full Text Available In flowering plants, the egg and sperm cells form within haploid gametophytes. The female gametophyte of Arabidopsis consists of two gametic cells, the egg cell and the central cell, which are flanked by five accessory cells. Both gametic and accessory cells are vital for fertilization; however, the mechanisms that underlie the formation of accessory versus gametic cell fate are unknown. In a screen for regulators of egg cell fate, we isolated the lachesis (lis mutant which forms supernumerary egg cells. In lis mutants, accessory cells differentiate gametic cell fate, indicating that LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate. The temporal and spatial pattern of LIS expression suggests that this mechanism is generated in gametic cells. LIS is homologous to the yeast splicing factor PRP4, indicating that components of the splice apparatus participate in cell fate decisions.

  11. Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo.

    Science.gov (United States)

    Onjiko, Rosemary M; Moody, Sally A; Nemes, Peter

    2015-05-26

    Spatial and temporal changes in molecular expression are essential to embryonic development, and their characterization is critical to understand mechanisms by which cells acquire different phenotypes. Although technological advances have made it possible to quantify expression of large molecules during embryogenesis, little information is available on metabolites, the ultimate indicator of physiological activity of the cell. Here, we demonstrate that single-cell capillary electrophoresis-electrospray ionization mass spectrometry is able to test whether differential expression of the genome translates to the domain of metabolites between single embryonic cells. Dissection of three different cell types with distinct tissue fates from 16-cell embryos of the South African clawed frog (Xenopus laevis) and microextraction of their metabolomes enabled the identification of 40 metabolites that anchored interconnected central metabolic networks. Relative quantitation revealed that several metabolites were differentially active between the cell types in the wild-type, unperturbed embryos. Altering postfertilization cytoplasmic movements that perturb dorsal development confirmed that these three cells have characteristic small-molecular activity already at cleavage stages as a result of cell type and not differences in pigmentation, yolk content, cell size, or position in the embryo. Changing the metabolite concentration caused changes in cell movements at gastrulation that also altered the tissue fates of these cells, demonstrating that the metabolome affects cell phenotypes in the embryo.

  12. Power-Law Modeling of Cancer Cell Fates Driven by Signaling Data to Reveal Drug Effects

    Science.gov (United States)

    Zhang, Fan; Wu, Min; Kwoh, Chee Keong; Zheng, Jie

    2016-01-01

    Extracellular signals are captured and transmitted by signaling proteins inside a cell. An important type of cellular responses to the signals is the cell fate decision, e.g., apoptosis. However, the underlying mechanisms of cell fate regulation are still unclear, thus comprehensive and detailed kinetic models are not yet available. Alternatively, data-driven models are promising to bridge signaling data with the phenotypic measurements of cell fates. The traditional linear model for data-driven modeling of signaling pathways has its limitations because it assumes that the a cell fate is proportional to the activities of signaling proteins, which is unlikely in the complex biological systems. Therefore, we propose a power-law model to relate the activities of all the measured signaling proteins to the probabilities of cell fates. In our experiments, we compared our nonlinear power-law model with the linear model on three cancer datasets with phosphoproteomics and cell fate measurements, which demonstrated that the nonlinear model has superior performance on cell fates prediction. By in silico simulation of virtual protein knock-down, the proposed model is able to reveal drug effects which can complement traditional approaches such as binding affinity analysis. Moreover, our model is able to capture cell line specific information to distinguish one cell line from another in cell fate prediction. Our results show that the power-law data-driven model is able to perform better in cell fate prediction and provide more insights into the signaling pathways for cancer cell fates than the linear model. PMID:27764199

  13. Photochemical fate of beta-blockers in NOM enriched waters

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Ling; Xu, Haomin; Cooper, William J. [Urban Water Research Center, Department of Civil and Environmental Engineering, University of California, Irvine, Irvine, CA 92697-2175 (United States); Song, Weihua, E-mail: wsong@fudan.edu.cn [Department of Environmental Science and Engineering, Fudan University, Shanghai 200433 (China)

    2012-06-01

    Beta-blockers, prescribed for the treatment of high blood pressure and for long-term use after a heart attack, have been detected in surface and ground waters. This study examines the photochemical fate of three beta-blockers, atenolol, metoprolol, and nadolol. Hydrolysis accounted for minor losses of these beta-blockers in the pH range 4-10. The rate of direct photolysis at pH 7 in a solar simulator varied from 6.1 to 8.9 h{sup -1} at pH 7. However, the addition of a natural organic matter (NOM) isolate enhanced the photochemical loss of all three compounds. Indirect photochemical fate, generally described by reactions with hydroxyl radical ({center_dot}OH) and singlet oxygen ({sup 1}{Delta}O{sub 2}), and, the direct reaction with the triplet excited state, {sup 3}NOM{sup Low-Asterisk }, also varied but collectively appeared to be the major loss factor. Bimolecular reaction rate constants of the three beta-blockers with {sup 1}{Delta}O{sub 2} and {center_dot}OH were measured and accounted for 0.02-0.04% and 7.2-38.9% of their loss, respectively. These data suggest that the {sup 3}NOM{sup Low-Asterisk} contributed 50.6-85.4%. Experiments with various {sup 3}NOM{sup Low-Asterisk} quenchers supported the hypothesis that it was singly the most important reaction. Atenolol was chosen for more detailed investigation, with the photoproducts identified by LC-MS analysis. The results suggested that electron-transfer could be an important mechanism in photochemical fate of beta-blockers in the presence of NOM. - Highlights: Black-Right-Pointing-Pointer Photochemical degradation of beta-blockers in the simulated natural waters. Black-Right-Pointing-Pointer Reactive Oxygen Species play a minor role in the indirect photodegradation. Black-Right-Pointing-Pointer The loss of beta-blockers results from direct reaction with {sup 3}DOM{sup Low-Asterisk }.

  14. Fate and degradation of petroleum hydrocarbons in stormwater bioretention cells

    Science.gov (United States)

    LeFevre, Gregory Hallett

    This dissertation describes the investigation of the fate of hydrocarbons in stormwater bioretention areas and those mechanisms that affect hydrocarbon fate in such systems. Seventy-five samples from 58 bioretention areas were collected and analyzed to measure total petroleum hydrocarbon (TPH) residual and biodegradation functional genes. TPH residual in bioretention areas was greater than background sites but low overall (biodegradation. Field soils were capable of mineralizing naphthalene, a polycyclic aromatic hydrocarbon (PAH) when incubated in the laboratory. In an additional laboratory investigation, a column study was initiated to comprehensively determine naphthalene fate in a simulated bioretention cell using a 14C-labeled tracer. Sorption to soil was the greatest sink of naphthalene in the columns, although biodegradation and vegetative uptake were also important loss mechanisms. Little leaching occurred following the first flush, and volatilization was insignificant. Significant enrichment of naphthalene degrading bacteria occurred over the course of the experiment as a result of naphthalene exposure. This was evident from enhanced naphthalene biodegradation kinetics (measured via batch tests), significant increases in naphthalene dioxygenase gene quantities, and a significant correlation observed between naphthalene residual and biodegradation functional genes. Vegetated columns outperformed the unplanted control column in terms of total naphthalene removal and biodegradation kinetics. As a result of these experiments, a final study focused on why planted systems outperform unplanted systems was conducted. Plant root exudates were harvested from hydroponic setups for three types of plants. Additionally, a solution of artificial root exudates (AREs) as prepared. Exudates were digested using soil bacteria to create metabolized exudates. Raw and metabolized exudates were characterized for dissolved organic carbon, specific UV absorbance, spectral slope

  15. Competition in notch signaling with cis enriches cell fate decisions.

    Directory of Open Access Journals (Sweden)

    Pau Formosa-Jordan

    Full Text Available Notch signaling is involved in cell fate choices during the embryonic development of Metazoa. Commonly, Notch signaling arises from the binding of the Notch receptor to its ligands in adjacent cells driving cell-to-cell communication. Yet, cell-autonomous control of Notch signaling through both ligand-dependent and ligand-independent mechanisms is known to occur as well. Examples include Notch signaling arising in the absence of ligand binding, and cis-inhibition of Notch signaling by titration of the Notch receptor upon binding to its ligands within a single cell. Increasing experimental evidences support that the binding of the Notch receptor with its ligands within a cell (cis-interactions can also trigger a cell-autonomous Notch signal (cis-signaling, whose potential effects on cell fate decisions and patterning remain poorly understood. To address this question, herein we mathematically and computationally investigate the cell states arising from the combination of cis-signaling with additional Notch signaling sources, which are either cell-autonomous or involve cell-to-cell communication. Our study shows that cis-signaling can switch from driving cis-activation to effectively perform cis-inhibition and identifies under which conditions this switch occurs. This switch relies on the competition between Notch signaling sources, which share the same receptor but differ in their signaling efficiency. We propose that the role of cis-interactions and their signaling on fine-grained patterning and cell fate decisions is dependent on whether they drive cis-inhibition or cis-activation, which could be controlled during development. Specifically, cis-inhibition and not cis-activation facilitates patterning and enriches it by modulating the ratio of cells in the high-ligand expression state, by enabling additional periodic patterns like stripes and by allowing localized patterning highly sensitive to the precursor state and cell-autonomous bistability

  16. Microscale technologies for cell engineering

    CERN Document Server

    Gaharwar, Akhilesh

    2016-01-01

    This book offers readers cutting-edge research at the interface of polymer science and engineering, biomedical engineering, materials science, and biology. State-of-the-art developments in microscale technologies for cell engineering applications are covered, including technologies relevant to both pluripotent and adult stem cells, the immune system, and somatic cells of the animal and human origin. This book bridges the gap in the understanding of engineering biology at multiple length scale, including microenvironmental control, bioprocessing, and tissue engineering in the areas of cardiac, cartilage, skeletal, and vascular tissues, among others. This book also discusses unique, emerging areas of micropatterning and three-dimensional printing models of cellular engineering, and contributes to the better understanding of the role of biophysical factors in determining the cell fate. Microscale Technologies for Cell Engineering is valuable for bioengineers, biomaterial scientists, tissue engineers, clinicians,...

  17. Subtask 4.8 - Fate and Control of Mercury and Trace Elements

    Energy Technology Data Exchange (ETDEWEB)

    Pavlish, John; Lentz, Nicholas; Martin, Christopher; Ralston, Nicholas; Zhuang, Ye; Hamre, Lucinda

    2011-12-31

    The Center for Air Toxic Metals® (CATM®) Program at the Energy & Environmental Research Center (EERC) continues to focus on vital basic and applied research related to the fate, behavior, measurement, and control of trace metals, especially mercury, and the impact that these trace metals have on human health and the environment. For years, the CATM Program has maintained an international perspective, performing research and providing results that apply to both domestic and international audiences, with reports distributed in the United States and abroad. In addition to trace metals, CATM’s research focuses on other related emissions and issues that impact trace metal releases to the environment, such as SOx, NOx, CO2, ash, and wastewater streams. Of paramount interest and focus has been performing research that continues to enable the power and industrial sectors to operate in an environmentally responsible manner to meet regulatory standards. The research funded by the U.S. Department of Energy’s (DOE’s) National Energy Technology Laboratory (NETL) through CATM has allowed significant strides to be made to gain a better understanding of trace metals and other emissions, improve sampling and measurement techniques, fill data gaps, address emerging technical issues, and develop/test control technologies that allow industry to cost-effectively meet regulatory standards. The DOE NETL–CATM research specifically focused on the fate and control of mercury and trace elements in power systems that use CO2 control technologies, such as oxycombustion and gasification systems, which are expected to be among those technologies that will be used to address climate change issues. In addition, research addressed data gaps for systems that use conventional and multipollutant control technologies, such as electrostatic precipitators, selective catalytic reduction units, flue gas desulfurization systems, and flue gas

  18. Citizenship Education and Human Rights in Sites of Ethnic Conflict: Toward Critical Pedagogies of Compassion and Shared Fate

    Science.gov (United States)

    Zembylas, Michalinos

    2012-01-01

    The present essay discusses the value of citizenship as shared fate in sites of ethnic conflict and analyzes its implications for citizenship education in light of three issues: first, the requirements of affective relationality in the notion of citizenship-as-shared fate; second, the tensions between the values of human rights and shared fate in…

  19. Looking to the future following 10 years of induced pluripotent stem cell technologies.

    Science.gov (United States)

    Li, Mo; Izpisua Belmonte, Juan Carlos

    2016-09-01

    The development of induced pluripotent stem cells (iPSCs) has fundamentally changed our view on developmental cell-fate determination and led to a cascade of technological innovations in regenerative medicine. Here we provide an overview of the progress in the field over the past decade, as well as our perspective on future directions and clinical implications of iPSC technology.

  20. Pre-Meiotic Anther Development: Cell Fate Specification and Differentiation.

    Science.gov (United States)

    Walbot, Virginia; Egger, Rachel L

    2016-04-29

    Research into anther ontogeny has been an active and developing field, transitioning from a strictly lineage-based view of cellular differentiation events to a more complex understanding of cell fate specification. Here we describe the modern interpretation of pre-meiotic anther development, from the earliest cell specifications within the anther lobes through SPL/NZZ-, MSP1-, and MEL1-dependent pathways as well as the initial setup of the abaxial and adaxial axes and outgrowth of the anther lobes. We then continue with a look at the known information regarding further differentiation of the somatic layers of the anther (the epidermis, endothecium, middle layer, and tapetum), with an emphasis on male-sterile mutants identified as defective in somatic cell specification. We also describe the differences in developmental stages among species and use this information to discuss molecular studies that have analyzed transcriptome, proteome, and small-RNA information in the anther.

  1. Fate restriction and multipotency in retinal stem cells.

    Science.gov (United States)

    Centanin, Lázaro; Hoeckendorf, Burkhard; Wittbrodt, Joachim

    2011-12-02

    Stem cells have the capacity to both self-renew and generate postmitotic cells. Long-term tracking of individual clones in their natural environment constitutes the ultimate way to validate postembryonic stem cells. We identify retinal stem cells (RSCs) using the spatiotemporal organization of the fish retina and follow the complete offspring of a single cell during the postnatal life. RSCs generate two tissues of the adult fish retina, the neural retina (NR) and the retinal-pigmented epithelium (RPE). Despite their common embryonic origin and tight coordination during continuous organ growth, we prove that NR and RPE are maintained by dedicated RSCs that contribute in a fate-restricted manner to either one or the other tissue. We show that in the NR, RSCs are multipotent and generate all neuron types and glia. The clonal origin of these different cell types from a multipotent NSC has far-reaching implications for cell type and tissue homeostasis.

  2. Fate of Volatile Organic Compounds in Constructed Wastewater Treatment Wetlands

    Science.gov (United States)

    Keefe, S.H.; Barber, L.B.; Runkel, R.L.; Ryan, J.N.

    2004-01-01

    The fate of volatile organic compounds was evaluated in a wastewater-dependent constructed wetland near Phoenix, AZ, using field measurements and solute transport modeling. Numerically based volatilization rates were determined using inverse modeling techniques and hydraulic parameters established by sodium bromide tracer experiments. Theoretical volatilization rates were calculated from the two-film method incorporating physicochemical properties and environmental conditions. Additional analyses were conducted using graphically determined volatilization rates based on field measurements. Transport (with first-order removal) simulations were performed using a range of volatilization rates and were evaluated with respect to field concentrations. The inverse and two-film reactive transport simulations demonstrated excellent agreement with measured concentrations for 1,4-dichlorobenzene, tetrachloroethene, dichloromethane, and trichloromethane and fair agreement for dibromochloromethane, bromo-dichloromethane, and toluene. Wetland removal efficiencies from inlet to outlet ranged from 63% to 87% for target compounds.

  3. Fate of mycotoxins during beer brewing and fermentation.

    Science.gov (United States)

    Inoue, Tomonori; Nagatomi, Yasushi; Uyama, Atsuo; Mochizuki, Naoki

    2013-01-01

    Mycotoxins are frequent contaminants of grains, and breweries need, therefore, to pay close attention to the risk of contamination in beer made from such grains as barley and corn. The fate of 14 types of mycotoxin (aflatoxins, fumonisins, ochratoxin A, patulin, trichothecenes, and zearalenone) during beer brewing was investigated in this study. Malt artificially spiked with each mycotoxin was put through the mashing, filtration, boiling and fermentation processes involved in brewing. After brewing, the levels of aflatoxins, ochratoxin A, patulin, and zearalenone were found to have decreased to less than 20% of their initial concentration. They had been adsorbed mainly to the spent grain and removed from the unhopped wort. Additionally, as zearalenone was known, patulin was metabolized to the less toxic compound during the fermentation process. The risk of carry-over to beer was therefore reduced for half of the mycotoxins studied. However, attention still needs to be paid to the risk of trichothecene contamination.

  4. Urban airborne particulate matter. Origin, chemistry, fate and health impacts

    Energy Technology Data Exchange (ETDEWEB)

    Zereini, Fathi [Frankfurt Univ., Frankfurt am Main (Germany). Inst. for Atmospheric and Environmental Sciences; Wiseman, Clare L.S. (eds.) [Toronto Univ., ON (CA). Adaptation and Impacts Research Group (AIRG)

    2010-07-01

    This book presents the most up-to-date research and information regarding the origin, chemistry, fate and health impacts of airborne particulate matter in urban areas, a topic which has received a great deal of attention in recent years due to documented relationships between exposure and health effects such as asthma. With internationally recognised researchers and academics presenting their work and key concepts and approaches from a variety of disciplines, including environmental and analytical chemistry, biology, toxicology, mineralogy and the geosciences, this book addresses the topic of urban airborne particulate matter in a comprehensive, multidisciplinary manner. Topics and research addressed in the book range from common methodological approaches used to sample and analyse the composition of airborne particulates to our knowledge regarding their potential to impact human health and the various policy approaches taken internationally to regulate particulate matter levels. (orig.)

  5. Control of Cell Fate in the Circulatory and Ventilatory Systems

    CERN Document Server

    Thiriet, Marc

    2012-01-01

    The volumes in this authoritative series present a multidisciplinary approach to modeling and simulation of flows in the cardiovascular and ventilatory systems, especially multiscale modeling and coupled simulations. The cardiovascular and respiratory systems are tightly coupled, as their primary function is to supply oxygen to and remove carbon dioxide from the body's cells. Because physiological conduits have deformable and reactive walls, macroscopic flow behavior and prediction must be coupled to nano- and microscopic events in a corrector scheme of regulated mechanisms. Therefore, investigation of flows of blood and air in physiological conduits requires an understanding of the biology, chemistry, and physics of these systems together with the mathematical tools to describe their functioning. Volumes 1 and 2 are devoted to cell organization and fate, as well as activities that are autoregulated and/or controlled by the cell environment. Volume 1 examined cellular features that allow adaptation to env...

  6. Trichloromethyl compounds - natural background concentrations and fates within and

    DEFF Research Database (Denmark)

    Albers, Christian Nyrop; Hansen, Poul Erik; Jacobsen, Ole Stig

    2010-01-01

    occurrence and cycling of organic compounds with a trichloromethyl moiety in common. The study areas are temperate coniferous forests. Trichloromethyl compounds can be found in all compartments of the forests (groundwater, soil, vegetation and throughfall), but not all compounds in all compartments....... The atmospheric input of trichloromethyl compounds is found to be minor, with significant contributions for trichloroacetic acid (TCAA), only. In top soil, where the formation of the compounds is expected to occur, there is a clear positive relationship between chloroform and trichloroacetyl containing compounds....... Other positive relations occur, which in combination with chlorination experiments performed in the laboratory, point to the fact that all the trichloromethyl compounds may be formed concurrently in the soil, and their subsequent fates then differ due to different physical, chemical and biological...

  7. Fate of classical solitons in one-dimensional quantum systems.

    Energy Technology Data Exchange (ETDEWEB)

    Pustilnik, M.; Matveev, K. A.

    2015-11-23

    We study one-dimensional quantum systems near the classical limit described by the Korteweg-de Vries (KdV) equation. The excitations near this limit are the well-known solitons and phonons. The classical description breaks down at long wavelengths, where quantum effects become dominant. Focusing on the spectra of the elementary excitations, we describe analytically the entire classical-to-quantum crossover. We show that the ultimate quantum fate of the classical KdV excitations is to become fermionic quasiparticles and quasiholes. We discuss in detail two exactly solvable models exhibiting such crossover, the Lieb-Liniger model of bosons with weak contact repulsion and the quantum Toda model, and argue that the results obtained for these models are universally applicable to all quantum one-dimensional systems with a well-defined classical limit described by the KdV equation.

  8. Cell biological regulation of division fate in vertebrate neuroepithelial cells.

    Science.gov (United States)

    Willardsen, Minde I; Link, Brian A

    2011-08-01

    The developing nervous system derives from neuroepithelial progenitor cells that divide to generate all of the mature neuronal types. For the proper complement of cell types to form, the progenitors must produce postmitotic cells, yet also replenish the progenitor pool. Progenitor divisions can be classified into three general types: symmetric proliferative (producing two progenitors), asymmetric neurogenic (producing one progenitor and one postmitotic cell), and symmetric neurogenic (producing two postmitotic cells). The appropriate ratios for these modes of cell division require intrinsic polarity, which is one of the characteristics that define neuroepithelial progenitor cells. The type of division an individual progenitor undergoes can be influenced by cellular features, or behaviors, which are heterogeneous within the population of progenitors. Here we review three key cellular parameters, asymmetric inheritance, cell cycle kinetics, and interkinetic nuclear migration, and the possible mechanisms for how these features influence progenitor fates. Copyright © 2011 Wiley-Liss, Inc.

  9. The fate of volatiles in mid-ocean ridge magmatism

    CERN Document Server

    Keller, Tobias; Hirschmann, Marc M

    2016-01-01

    Deep-Earth volatile cycles couple the mantle with near-surface reservoirs. Volatiles are emitted by volcanism and, in particular, from mid-ocean ridges, which are the most prolific source of basaltic volcanism. Estimates of volatile extraction from the asthenosphere beneath ridges typically rely on measurements of undegassed lavas combined with simple petrogenetic models of the mean degree of melting. Estimated volatile fluxes have large uncertainties; this is partly due to a poor understanding of how volatiles are transported by magma in the asthenosphere. Here, we assess the fate of mantle volatiles through numerical simulations of melting and melt transport at mid-ocean ridges. Our simulations are based on two-phase, magma/mantle dynamics theory coupled to an idealised thermodynamic model of mantle melting in the presence of water and carbon dioxide. We combine simulation results with catalogued observations of all ridge segments to estimate a range of likely volatile output from the global mid-ocean ridge...

  10. ENM fate in freshwater through adaption of USEtox

    DEFF Research Database (Denmark)

    Miseljic, Mirko; Birkved, Morten; Olsen, Stig Irving

    Engineered nanomaterials (ENMs) have in recent time received substantial attention, both in scientific and consumer circles, as these materials are introduced to a steadily increasing number of consumer products. This has led to environmental concerns on how this new material class behaves...... in the environment, at which concentrations organisms are exposed to the materials and what effects these materials may have on the environment. In relation to metal-oxide engineered nanomaterials (ENMs), as is the general case for ENMs, many environmental aspects are still unknown and/or hence not properly...... scientifically mapped. One approach that has not been given much attention in relation to environmental assessment of ENM, more precisely the fate, exposure and effect modelling of metal-oxide ENMs is the application of adapted characterization modelling (ACM) and hence application of characterisation models...

  11. Mass loss and fate of the most massive stars

    CERN Document Server

    Vink, Jorick S

    2012-01-01

    The fate of massive stars up to 300 Msun is highly uncertain. Do these objects produce pair-instability explosions, or normal Type Ic supernovae? In order to address these questions, we need to know their mass-loss rates during their lives. Here we present mass-loss predictions for very massive stars (VMS) in the range of 60-300 Msun. We use a novel method that simultaneously predicts the wind terminal velocities (vinf) and mass-loss rate (dM/dt) as a function of the stellar parameters: (i) luminosity/mass Gamma, (ii) metallicity Z, and (iii) effective temperature Teff. Using our results, we evaluate the likely outcomes for the most massive stars.

  12. Origin and fate of the regenerating cells of the kidney.

    Science.gov (United States)

    Eymael, Jennifer; Smeets, Bart

    2016-11-05

    The kidney has the capacity to regenerate itself provided that the damage is limited and the structure of the kidney remains intact. Nevertheless, in disease conditions this potential may be compromised, leading to progression to chronic kidney disease. For development of new therapeutic strategies it is a prerequisite to understand the origin and regulation of the kidney regenerating cells and the processes that underlie maladaptive repair. Because of the complexity of the kidney consisting of a high number of different cell types, it is a complex task to unravel the origin and fate of cells responsible for regeneration. This review summarises the recent and most important advances in identifying regenerating cell populations of the kidney, and highlights the existing controversies.

  13. Environmental fate of natural radioactive contaminants in fertilizers and phosphogypsum

    Energy Technology Data Exchange (ETDEWEB)

    Batalha, Marcia Salamoni; Genuchten, Martinus Theodorus van, E-mail: msbatalha@oi.com.b, E-mail: rvangenuchten@yahoo.co [Federal University of Rio de Janeiro (LTTC/COPPE/UFRJ), RJ (Brazil). Dept. of Mechanical Engineering. Lab. de Transmissao e Tecnologia do Calor; Bezerra, Camila Rosa, E-mail: camila.rosabz@gmail.co [Federal University of Rio de Janeiro (COPPE/UFRJ), RJ (Brazil). Dept. of Civil Engineering; Pontedeiro, Elizabeth May, E-mail: bettymay@cnen.gov.b [Brazilian Nuclear Energy Commission (CNEN), Rio de Janeiro, RJ (Brazil)

    2010-07-01

    Agricultural soils often require the use of fertilizers and soil conditioners for optimal production. Phosphate fertilizers produced from igneous phosphate rock often contain small amounts of natural radionuclides (notably uranium and thorium), while the byproduct phosphogypsum (dihydrated calcium sulfate) is typically enriched in radium and lead. It is important to understand the long-term fate of these radionuclides when routinely applied via fertilizers ({sup 238}U and {sup 234}U) and phosphogypsum as an amendment ({sup 226}Ra and {sup 210}Pb) to agricultural lands. This study addresses the results of modeling their transport in a typical Cerrado soil profile. The HYDRUS-1D code was used to compare possible soil and groundwater pollution scenarios following the long term use of fertilizers and phosphogypsum in agricultural operations. Results using the equilibrium transport approach suggest that radionuclide concentrations originating from the use of phosphate fertilizers and phosphogypsum are relatively modest and will not pose a major risk to polluting underlying groundwater resources. (author)

  14. Intracellular Events and Cell Fate in Filovirus Infection

    Directory of Open Access Journals (Sweden)

    Elena Ryabchikova

    2011-08-01

    Full Text Available Marburg and Ebola viruses cause a severe hemorrhagic disease in humans with high fatality rates. Early target cells of filoviruses are monocytes, macrophages, and dendritic cells. The infection spreads to the liver, spleen and later other organs by blood and lymph flow. A hallmark of filovirus infection is the depletion of non-infected lymphocytes; however, the molecular mechanisms leading to the observed bystander lymphocyte apoptosis are poorly understood. Also, there is limited knowledge about the fate of infected cells in filovirus disease. In this review we will explore what is known about the intracellular events leading to virus amplification and cell damage in filovirus infection. Furthermore, we will discuss how cellular dysfunction and cell death may correlate with disease pathogenesis.

  15. Emerging organic contaminants in sludges. Analysis, fate and biological treatment

    Energy Technology Data Exchange (ETDEWEB)

    Vicent, Teresa [Univ. Autonoma de Barcelona, Bellaterra (Spain). Chemical Engineering Dept.; Eljarrat, Ethel [IDAEA-CSIC, Barcelona (Spain). Dept. of Environmental Chemistry; Caminal, Gloria [IQAC-CSIC, Barcelona (Spain). Grupo de biocatalisis Aplicada y biodegradacion; Barcelo, Damia (eds.) [IDAEA-CSIC, Barcelona (Spain). Dept. of Environmental Chemistry; Girona Univ. (Spain). Catalan Inst. for Water Research

    2013-07-01

    A comprehensive review. Written by experts. Richly illustrated. There are a growing number of new chemicals in the environment that represent an ascertained or potential risk. Many of them can be found in sewage sludge and are the subject of this volume. Experts in the field highlight their occurrence and fate, risks of biosolid use, advanced chemical analysis methods, and degradation techniques with a special focus on biodegradation using fungi. In the final chapter conclusions and trends are offered as a point of departure for future studies. The double-disciplinary approach combining environmental analysis and engineering makes the book a valuable and comprehensive source of information for a broad audience, such as environmental chemists and engineers, biotechnologists, ecotoxicologists and professionals responsible for waste and water management.

  16. Production, use, and fate of all plastics ever made

    Science.gov (United States)

    Geyer, Roland; Jambeck, Jenna R.; Law, Kara Lavender

    2017-01-01

    Plastics have outgrown most man-made materials and have long been under environmental scrutiny. However, robust global information, particularly about their end-of-life fate, is lacking. By identifying and synthesizing dispersed data on production, use, and end-of-life management of polymer resins, synthetic fibers, and additives, we present the first global analysis of all mass-produced plastics ever manufactured. We estimate that 8300 million metric tons (Mt) as of virgin plastics have been produced to date. As of 2015, approximately 6300 Mt of plastic waste had been generated, around 9% of which had been recycled, 12% was incinerated, and 79% was accumulated in landfills or the natural environment. If current production and waste management trends continue, roughly 12,000 Mt of plastic waste will be in landfills or in the natural environment by 2050. PMID:28776036

  17. Divergence of zebrafish and mouse lymphatic cell fate specification pathways

    DEFF Research Database (Denmark)

    van Impel, Andreas; Zhao, Zhonghua; Hermkens, Dorien M A;

    2014-01-01

    . Murine Prox1-null embryos lack lymphatic structures, and sustained expression of Prox1 is indispensable for the maintenance of lymphatic cell fate even at adult stages, highlighting the unique importance of this gene for the lymphatic lineage. Whether this pre-eminent role of Prox1 within the lymphatic...... vasculature is conserved in other vertebrate classes has remained unresolved, mainly owing to the lack of availability of loss-of-function mutants. Here, we re-examine the role of Prox1a in zebrafish lymphangiogenesis. First, using a transgenic reporter line, we show that prox1a is initially expressed...... that the functionally related transcription factors Coup-TFII and Sox18 are also dispensable for lymphangiogenesis. Together, these findings suggest that lymphatic commitment in zebrafish and mice is controlled in fundamentally different ways....

  18. 'Open minded' cells: how cells can change fate.

    Science.gov (United States)

    Costa, Silvia; Shaw, Peter

    2007-03-01

    It has long intrigued researchers why some but not all organisms can regenerate missing body parts. Plants are remarkable in that they can regenerate the entire organism from a small piece of tissue, or even a single cell. Epigenetic mechanisms that control chromatin organization are now known to regulate the cellular plasticity and reprogramming necessary for regeneration. Interestingly, although animals and plants have evolved different strategies and mechanisms to control developmental processes, they have maintained many similarities in the way they regulate chromatin organization. Given that plants can rapidly switch fate, we propose that an understanding of the mechanisms regulating this process in plant cells could provide a new perspective on cellular dedifferentiation in animals.

  19. Engineering Cell Fate for Tissue Regeneration by In Vivo Transdifferentiation.

    Science.gov (United States)

    de Lázaro, I; Kostarelos, K

    2016-02-01

    Changes in cell identity occur in adult mammalian organisms but are rare and often linked to disease. Research in the last few decades has thrown light on how to manipulate cell fate, but the conversion of a particular cell type into another within a living organism (also termed in vivo transdifferentiation) has only been recently achieved in a limited number of tissues. Although the therapeutic promise of this strategy for tissue regeneration and repair is exciting, important efficacy and safety concerns will need to be addressed before it becomes a reality in the clinical practice. Here, we review the most relevant in vivo transdifferentiation studies in adult mammalian animal models, offering a critical assessment of this potentially powerful strategy for regenerative medicine.

  20. Fate of Fusarium Toxins during the Malting Process.

    Science.gov (United States)

    Habler, Katharina; Hofer, Katharina; Geißinger, Cajetan; Schüler, Jan; Hückelhoven, Ralph; Hess, Michael; Gastl, Martina; Rychlik, Michael

    2016-02-17

    Little is known about the fate of Fusarium mycotoxins during the barley malting process. To determine the fungal DNA and mycotoxin concentrations during malting, we used barley grain harvested from field plots that we had inoculated with Fusarium species that produce type A or type B trichothecenes or enniatins. Using a recently developed multimycotoxin liquid chromatography-tandem mass stable isotope dilution method, we identified Fusarium-species-specific behaviors of mycotoxins in grain and malt extracts and compared toxin concentrations to amounts of fungal DNA in the same samples. In particular, the type B trichothecenes and Fusarium culmorum DNA contents were increased dramatically up to 5400% after kilning. By contrast, the concentrations of type A trichothecenes and Fusarium sporotrichioides DNA decreased during the malting process. These data suggest that specific Fusarium species that contaminate the raw grain material might have different impacts on malt quality.

  1. Commentary on: Christensen, Clayton M. (2012): Disruptive Innovation. In: Soegaard, Mads and Dam, Rikke Friis (eds.). "Encyclopedia of Human-Computer Interaction". Aarhus, Denmark: The Interaction-Design.org Foundation. Available online at http://www.interaction-design.org/encyclopedia/disruptive_innovation.html

    OpenAIRE

    Steen, M.G.D.

    2012-01-01

    Book : A disruptive technology or disruptive innovation is an innovation that helps create a new market and value network, and eventually goes on to disrupt an existing market and value network. The term is used in business and technology literature to describe innovations that improve a product or service in ways that the market does not expect. Although the term disruptive technology is widely used, disruptive innovation seems a more appropriate term in many contexts since few technologies ...

  2. Spatialised fate factors for nitrate in catchments: modelling approach and implication for LCA results.

    Science.gov (United States)

    Basset-Mens, Claudine; Anibar, Lamiaa; Durand, Patrick; van der Werf, Hayo M G

    2006-08-15

    The challenge for environmental assessment tools, such as Life Cycle Assessment (LCA) is to provide a holistic picture of the environmental impacts of a given system, while being relevant both at a global scale, i.e., for global impact categories such as climate change, and at a smaller scale, i.e., for regional impact categories such as aquatic eutrophication. To this end, the environmental mechanisms between emission and impact should be taken into account. For eutrophication in particular, which is one of the main impacts of farming systems, the fate factor of eutrophying pollutants in catchments, and particularly of nitrate, reflects one of these important and complex environmental mechanisms. We define this fate factor as: the ratio of the amount of nitrate at the outlet of the catchment over the nitrate emitted from the catchment's soils. In LCA, this fate factor is most often assumed equal to 1, while the observed fate factor is generally less than 1. A generic approach for estimating the range of variation of nitrate fate factors in a region of intensive agriculture was proposed. This approach was based on the analysis of different catchment scenarios combining different catchment types and different effective rainfalls. The evolution over time of the nitrate fate factor as well as the steady state fate factor for each catchment scenario was obtained using the INCA simulation model. In line with the general LCA model, the implications of the steady state fate factors for nitrate were investigated for the eutrophication impact result in the framework of an LCA of pig production. A sensitivity analysis to the fraction of nitrate lost as N(2)O was presented for the climate change impact category. This study highlighted the difference between the observed fate factor at a given time, which aggregates both storage and transformation processes and a "steady state fate factor", specific to the system considered. The range of steady state fate factors obtained for

  3. Fate of diffusion restricted lesions in acute intracerebral hemorrhage.

    Directory of Open Access Journals (Sweden)

    Yuan-Hsiung Tsai

    Full Text Available Diffusion-restricted lesions on diffusion-weighted imaging (DWI are detected in patients with intracerebral hemorrhage (ICH. In this study, we aimed to determine the fate of DWI lesions in ICH patients and whether the presence of DWI lesions is associated with functional outcome in patients with ICH.This prospective study enrolled 153 patients with acute ICH. Baseline MRI scans were performed within 2 weeks after ICH to detect DWI lesions and imaging markers for small vessel disease (SVD. Follow-up MRI scans were performed at 3 months after ICH to assess the fate of the DWI lesions. We analyzed the associations between the characteristics of DWI lesions with clinical features and functional outcome.Seventeen of the 153 patients (11.1% had a total of 25 DWI lesions. Factors associated with DWI lesions were high initial systolic and mean arterial blood pressure (MAP at the emergency room, additional lowering of MAP within 24 hours, and the presence of white matter hyperintensity and cerebral microbleeds. Thirteen of the 25 DWI lesions (52% were not visible on follow-up T2-weighted or fluid-attenuated inversion recovery images and were associated with high apparent diffusion coefficient value and a sharper decease in MAP. The regression of DWI lesions was associated with good functional outcome.More than half of the DWI lesions in the ICH patients did not transition to visible, long-term infarction. Only if the DWI lesion finally transitioned to final infarction was a poor functional outcome predicted. A DWI lesion may be regarded as an ischemic change of SVD and does not always indicate certain cerebral infarction or permanent tissue injury.

  4. Spatially patterned matrix elasticity directs stem cell fate

    Science.gov (United States)

    Yang, Chun; DelRio, Frank W.; Ma, Hao; Killaars, Anouk R.; Basta, Lena P.; Kyburz, Kyle A.; Anseth, Kristi S.

    2016-08-01

    There is a growing appreciation for the functional role of matrix mechanics in regulating stem cell self-renewal and differentiation processes. However, it is largely unknown how subcellular, spatial mechanical variations in the local extracellular environment mediate intracellular signal transduction and direct cell fate. Here, the effect of spatial distribution, magnitude, and organization of subcellular matrix mechanical properties on human mesenchymal stem cell (hMSCs) function was investigated. Exploiting a photodegradation reaction, a hydrogel cell culture substrate was fabricated with regions of spatially varied and distinct mechanical properties, which were subsequently mapped and quantified by atomic force microscopy (AFM). The variations in the underlying matrix mechanics were found to regulate cellular adhesion and transcriptional events. Highly spread, elongated morphologies and higher Yes-associated protein (YAP) activation were observed in hMSCs seeded on hydrogels with higher concentrations of stiff regions in a dose-dependent manner. However, when the spatial organization of the mechanically stiff regions was altered from a regular to randomized pattern, lower levels of YAP activation with smaller and more rounded cell morphologies were induced in hMSCs. We infer from these results that irregular, disorganized variations in matrix mechanics, compared with regular patterns, appear to disrupt actin organization, and lead to different cell fates; this was verified by observations of lower alkaline phosphatase (ALP) activity and higher expression of CD105, a stem cell marker, in hMSCs in random versus regular patterns of mechanical properties. Collectively, this material platform has allowed innovative experiments to elucidate a novel spatial mechanical dosing mechanism that correlates to both the magnitude and organization of spatial stiffness.

  5. Geochemical Fate and Transport of Sildenafil and Vardenafil

    Science.gov (United States)

    Richter, L.; Boudinot, G.; Vulava, V. M.; Cory, W. C.

    2015-12-01

    The geochemical fate of pharmaceuticals and their degradation products is a developing environmental field. The geologic, chemical, and biological fate of these pollutants has become very relevant with the increase in human population and the resulting increase in pollutant concentrations in the environment. In this study, we focus on sildenafil (SDF) and vardenafil (VDF), active compounds in Viagra and Levitra, respectively, two commonly used erectile dysfunction drugs. The main objective is to determine the sorption potential and transport behavior of these two compounds in natural soils. Both SDF and VDF are complex organic molecules with multiple amine functional groups in their structures. Two types of natural acidic soils (pH≈4.5), an organic-rich soil (7.6% OM) and clay-rich soil (5.1% clay) were used in this study to determine which soil components influence sorption behavior of both compounds. Sorption isotherms measured using batch reactors were nearly linear, but sorption was stronger in soil that contained higher clay content. Both compounds have multiple pKas due to the amine functional groups, the relevant pKas of SDF are 5.97 and 7.27, and those of VDF's are 4.72 and 6.21. These values indicate that these compounds likely behave as cations in soil suspensions and hence were strongly sorbed to negatively-charged clay minerals present in both soils. The clay composition in both soils is predominantly kaolinite with smaller amount of montmorillonite, both of which have a predominantly negative surface charge. Transport experiments using glass chromatography columns indicated that both compounds were more strongly retarded in the clay-rich soils. Breakthrough curves from the transport experiments were modeled using convection-dispersion transport equations. The organic matter in the soil seemed to play a less dominant role in the geochemistry in this study, but is likely to transform both compounds into derivative compounds as seen in other studies.

  6. Digging for Treasure - Unique Fate and Transport Study

    Energy Technology Data Exchange (ETDEWEB)

    Larry Zirker; M. K. Adler-Flitton; G. A. Beitel

    2003-02-01

    In 1970, scientists at the National Bureau of Standards (NBS), now called the National Institute of Standards and Testing (NIST), implemented the most ambitious and comprehensive long-term corrosion behavior test for stainless steels in soil environments. This study had historic significance since the NBS 1957 landmark corrosion textbook compiled by Romanoff did not include stainless steels, and this 1970 research set forth to complete the missing body of knowledge. To conduct the test, NIST scientists buried 6,324 coupons from stainless steel types, specialty alloys, composite configurations, multiple material forms, and treatment conditions at six distinctive soil-type sites throughout the country. Between 1971 and 1980, four sets of coupons were removed from the six sites to establish 1-year, 2-year, 4-year, and 8- year corrosion rates data sets for different soil environments. The fifth and last set of coupons (approximately 200 at each site) remains undisturbed after 32-years, providing a virtual buried treasure of material and subsurface scientific data. These buried coupons and the surrounding soils represent an analog to the condition of buried waste and containers. Heretofore, the samples were simply pulled from the soil, measured for mass loss and the corrosion rate determined while the subsurface/fate and transport information was not considered nor gathered. Funded through an Environmental Management Science Program (EMSP) proposal, the Idaho National Engineering and Environmental Laboratory (INEEL) operated for the U.S. Department of Energy by Bechtel-BWXT Idaho, LLC (BBWI), is chartered to restart this corrosion test and concurrently capture the available subsurface/fate and transport information. Since the work of retrieving the buried metal coupons is still in the planning stage, this paper outlines the interdisciplinary team of scientists and engineers and defines the benefits of this research to long-term stewardship, subsurface science, and

  7. Digging for Treasure - Unique Fate and Transport Study

    Energy Technology Data Exchange (ETDEWEB)

    Zirker, L.R.; Adler-Flitton, M.K.; Beitel, G.A.

    2003-02-24

    In 1970, scientists at the National Bureau of Standards (NBS), now called the National Institute of Standards and Testing (NIST), implemented the most ambitious and comprehensive long-term corrosion behavior test for stainless steels in soil environments. This study had historic significance since the NBS 1957 landmark corrosion textbook compiled by Romanoff did not include stainless steels, and this 1970 research set forth to complete the missing body of knowledge. To conduct the test, NIST scientists buried 6,324 coupons from stainless steel types, specialty alloys, composite configurations, multiple material forms, and treatment conditions at six distinctive soil-type sites throughout the country. Between 1971 and 1980, four sets of coupons were removed from six sites to establish 1-year, 2-year, 4-year, and 8-year corrosion rates data sets for different soil environments. The fifth and last set of coupons (approximately 200 at each site) remains undisturbed after 32-years, providing a virtual buried treasure of material and subsurface scientific data. These buried coupons and the surrounding soils represent an analog to the condition of buried waste and containers. Heretofore, the samples were simply pulled from the soil, measured for mass loss and the corrosion rate determined while the subsurface/fate and transport information was not considered nor gathered. Funded through an Environmental Management Science Program (EMSP) proposal, the Idaho National Engineering and Environmental Laboratory (INEEL) operated for the U.S. Department of Energy by Bechtel-BWXT Idaho, LLC (BBWI), is chartered to restart this corrosion test and concurrently capture the available subsurface/fate and transport information. Since the work of retrieving the buried metal coupons is still in the planning stage, this paper outlines the interdisciplinary team of scientists and engineers and defines the benefits of this research to long-term stewardship, subsurface science, and

  8. Dentin conditioning codetermines cell fate in regenerative endodontics.

    Science.gov (United States)

    Galler, Kerstin M; D'Souza, Rena N; Federlin, Marianne; Cavender, Adriana C; Hartgerink, Jeffrey D; Hecker, Stephanie; Schmalz, Gottfried

    2011-11-01

    Recent successes in dental pulp engineering indicate that regenerative treatment strategies in endodontics are feasible. Clinically, revascularization procedures render completion of root formation in immature teeth. The generation of a pulp-like tissue after seeding of dental pulp stem cells into dentin discs or cylinders and transplantation in vivo is possible. In this experimental setup, which mimics the situation in the root canal, the pretreatment of dentin might influence cellular behavior at the cell-dentin interface. Thus, the objective of this study was to investigate whether dentin conditioning can determine cell fate. Dental pulp stem cells (DPSCs) were seeded into a growth factor-laden peptide hydrogel, transferred into dentin cylinders, and transplanted subcutaneously into immunocompromised mice. Before cell seeding, dentin cylinders were either pretreated with sodium hypochloride (NaOCl) or conditioned with EDTA. The constructs were explanted after 6 weeks and subjected to histological and immunohistochemical analysis. In dentin treated with NaOCl, resorption lacunae were found at the cell-dentin interface created by multinucleated cells with clastic activity. After conditioning with EDTA, DPSCs adjacent to the dentin formed an intimate association with the surface, differentiated into odontoblasts-like cells that expressed dentin sialoprotein, and extended cellular processes into the dentinal tubules. A vascularized soft connective tissue similar to dental pulp was observed inside the dentin cylinder. Dentin conditioning considerably influences DPSC fate when seeded in close proximity to dentin. This information might be critical for optimized strategic planning for future regenerative endodontic treatment. Copyright © 2011 American Association of Endodontists. Published by Elsevier Inc. All rights reserved.

  9. Sorption, desorption, and surface oxidative fate of nicotine.

    Science.gov (United States)

    Petrick, Lauren; Destaillats, Hugo; Zouev, Irena; Sabach, Sara; Dubowski, Yael

    2010-09-21

    Nicotine dynamics in an indoor environment can be greatly affected by building parameters (e.g. relative humidity (RH), air exchange rate (AER), and presence of ozone), as well as surface parameters (e.g. surface area (SA) and polarity). To better understand the indoor fate of nicotine, these parameter effects on its sorption, desorption, and oxidation rates were investigated on model indoor surfaces that included fabrics, wallboard paper, and wood materials. Nicotine sorption under dry conditions was enhanced by higher SA and higher polarity of the substrate. Interestingly, nicotine sorption to cotton and nylon was facilitated by increased RH, while sorption to polyester was hindered by it. Desorption was affected by RH, AER, and surface type. Heterogeneous nicotine-ozone reaction was investigated by Fourier transform infrared spectrometry with attenuated total reflection (FTIR-ATR), and revealed a pseudo first-order surface reaction rate of 0.035 +/- 0.015 min(-1) (at [O(3)] = 6 +/- 0.3 x 10(15) molecules cm(-3)) that was partially inhibited at high RH. Extrapolation to a lower ozone level ([O(3)] = 42 ppb) showed oxidation on the order of 10(-5) min(-1) corresponding to a half-life of 1 week. In addition, similar surface products were identified in dry and high RH using gas chromatography-mass spectrometry (GC-MS). However, FTIR analysis revealed different product spectra for these conditions, suggesting additional unidentified products and association with surface water. Knowing the indoor fate of condensed and gas phase nicotine and its oxidation products will provide a better understanding of nicotine's impact on personal exposures as well as overall indoor air quality.

  10. Yap and Taz regulate retinal pigment epithelial cell fate.

    Science.gov (United States)

    Miesfeld, Joel B; Gestri, Gaia; Clark, Brian S; Flinn, Michael A; Poole, Richard J; Bader, Jason R; Besharse, Joseph C; Wilson, Stephen W; Link, Brian A

    2015-09-01

    The optic vesicle comprises a pool of bi-potential progenitor cells from which the retinal pigment epithelium (RPE) and neural retina fates segregate during ocular morphogenesis. Several transcription factors and signaling pathways have been shown to be important for RPE maintenance and differentiation, but an understanding of the initial fate specification and determination of this ocular cell type is lacking. We show that Yap/Taz-Tead activity is necessary and sufficient for optic vesicle progenitors to adopt RPE identity in zebrafish. A Tead-responsive transgene is expressed within the domain of the optic cup from which RPE arises, and Yap immunoreactivity localizes to the nuclei of prospective RPE cells. yap (yap1) mutants lack a subset of RPE cells and/or exhibit coloboma. Loss of RPE in yap mutants is exacerbated in combination with taz (wwtr1) mutant alleles such that, when Yap and Taz are both absent, optic vesicle progenitor cells completely lose their ability to form RPE. The mechanism of Yap-dependent RPE cell type determination is reliant on both nuclear localization of Yap and interaction with a Tead co-factor. In contrast to loss of Yap and Taz, overexpression of either protein within optic vesicle progenitors leads to ectopic pigmentation in a dosage-dependent manner. Overall, this study identifies Yap and Taz as key early regulators of RPE genesis and provides a mechanistic framework for understanding the congenital ocular defects of Sveinsson's chorioretinal atrophy and congenital retinal coloboma. © 2015. Published by The Company of Biologists Ltd.

  11. p47phox Directs Murine Macrophage Cell Fate Decisions

    Science.gov (United States)

    Yi, Liang; Liu, Qi; Orandle, Marlene S.; Sadiq-Ali, Sara; Koontz, Sherry M.; Choi, Uimook; Torres-Velez, Fernando J.; Jackson, Sharon H.

    2012-01-01

    Macrophage differentiation and function are pivotal for cell survival from infection and involve the processing of microenvironmental signals that determine macrophage cell fate decisions to establish appropriate inflammatory balance. NADPH oxidase 2 (Nox2)–deficient chronic granulomatous disease (CGD) mice that lack the gp91phox (gp91phox−/−) catalytic subunit show high mortality rates compared with wild-type mice when challenged by infection with Listeria monocytogenes (Lm), whereas p47phox-deficient (p47phox−/−) CGD mice show survival rates that are similar to those of wild-type mice. We demonstrate that such survival results from a skewed macrophage differentiation program in p47phox−/− mice that favors the production of higher levels of alternatively activated macrophages (AAMacs) compared with levels of either wild-type or gp91phox−/− mice. Furthermore, the adoptive transfer of AAMacs from p47phox−/− mice can rescue gp91phox−/− mice during primary Lm infection. Key features of the protective function provided by p47phox−/− AAMacs against Lm infection are enhanced production of IL-1α and killing of Lm. Molecular analysis of this process indicates that p47phox−/− macrophages are hyperresponsive to IL-4 and show higher Stat6 phosphorylation levels and signaling coupled to downstream activation of AAMac transcripts in response to IL-4 stimulation. Notably, restoring p47phox protein expression levels reverts the p47phox-dependent AAMac phenotype. Our results indicate that p47phox is a previously unrecognized regulator for IL-4 signaling pathways that are important for macrophage cell fate choice. PMID:22222227

  12. Analysing Models as a Knowledge Technology in Transport Planning

    DEFF Research Database (Denmark)

    Gudmundsson, Henrik

    2011-01-01

    Models belong to a wider family of knowledge technologies, applied in the transport area. Models sometimes share with other such technologies the fate of not being used as intended, or not at all. The result may be ill-conceived plans as well as wasted resources. Frequently, the blame for such a ......Models belong to a wider family of knowledge technologies, applied in the transport area. Models sometimes share with other such technologies the fate of not being used as intended, or not at all. The result may be ill-conceived plans as well as wasted resources. Frequently, the blame...... critical analytic literature on knowledge utilization and policy influence. A simple scheme based in this literature is drawn up to provide a framework for discussing the interface between urban transport planning and model use. A successful example of model use in Stockholm, Sweden is used as a heuristic...

  13. Fate of carbamazepine and anthracene in soils watered with UV-LED treated wastewaters.

    Science.gov (United States)

    Chevremont, A-C; Boudenne, J-L; Coulomb, B; Farnet, A-M

    2013-11-01

    Water disinfection technologies based on ultraviolet (UV) radiations emitted by Light-Emitting Diodes (LED), as a wastewater tertiary treatment, have been shown to be promising for water reuse. Here, we assessed the fate of two ubiquitous pollutants, carbamazepine and anthracene, in soil watered with either UV-LED treated wastewaters or irrigation water. After 3 months, anthracene and carbamazepine were transformed two and three times faster respectively, in soils watered with UV-LED wastewater than in soils watered with tap water (probably because of the addition of organic matter by the effluent). Laccase activity was induced in the presence of the pollutants and anthraquinone was found as anthracene product of oxidation by laccases. Moreover, the addition of these pollutants into soil did not affect the functional diversity of autochthonous microbial communities assessed by Ecolog plates. Cellulase, protease and urease activities increased in soils watered with UV-LED treated wastewaters (UV-LED WW), showing transformation of organic matter from the effluent and lipase activity increased by anthracene addition, confirming the potential role of these enzymes as indicators of hydrocarbon contamination.

  14. No One's Home: the Fate of Carbon on Lifeless Earths

    Science.gov (United States)

    Neveu, Marc

    Although several thousands of exoplanets are now known, including many terrestrial planets, their possible geology and climates remain poorly understood and understudied. Yet, understanding how elements such as carbon are cycled between a planet's interior, surface, and atmosphere is crucial to predict how lifeless planets operate and, by contrast, be able to detect deviations from abiotic backgrounds due to biology, the holy grail of exoplanet science. As a first, feasible step towards the difficult, long-term goal of understanding how key reactive elements (H, C, N, O, S) are cycled in the atmospheres, surfaces, and interiors of terrestrial exoplanets through time, we propose to carry out a self-consistent theoretical study of the fate of carbon in the atmospheres and at the surfaces of Earth-like, lifeless exoplanets. We will: 1. Model the near-surface geochemistry and geophysics of the carbon cycle to determine net carbon gas fluxes as a function of terrestrial planet size and redox conditions; 2. Model the atmospheric fate of carbon species as a function of stellar input; 3. Perform simulations that self-consistently combine geological and atmospheric processes; 4. Convert resulting atmospheric compositions to spectra to be archived as a public database for use by observers. We will track the abiotic fate of carbon and its atmospheric expression on Earth-like planets as a function of three key parameters: planet size, surface and atmospheric redox conditions, and stellar irradiation. To do so, we will further develop and use state-of-theart planetary geological ("Geo") and atmospheric ("Atmos") models. We have previously developed a code that couples geophysical evolution and water-rock geochemistry (Neveu et al. 2015, GRL 42, 10197). Using this code, we will calculate the speciation of carbon species versus depth in subaerial oceans, their possible incorporation into the crust by water-rock interaction at the seafloor or by subduction of sediments, and

  15. Multimedia Environmental Fate and Speciation of Engineered Nanoparticles: A Probabilistic Modeling Approach

    NARCIS (Netherlands)

    Meesters, J.; Quik, J.T.K.; Koelmans, A.A.; Hendriks, A.J.; Meent, van de D.

    2016-01-01

    The robustness of novel multimedia fate models in environmental exposure estimation of engineered nanoparticles (ENPs) remains unclear, because of uncertainties in the emission, physicochemical properties and natural variability in environmental systems. Here, we evaluate the uncertainty in predicte

  16. Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair.

    Directory of Open Access Journals (Sweden)

    Keigo Yoshizaki

    Full Text Available Cell fates are determined by specific transcriptional programs. Here we provide evidence that the transcriptional coactivator, Mediator 1 (Med1, is essential for the cell fate determination of ectodermal epithelia. Conditional deletion of Med1 in vivo converted dental epithelia into epidermal epithelia, causing defects in enamel organ development while promoting hair formation in the incisors. We identified multiple processes by which hairs are generated in Med1 deficient incisors: 1 dental epithelial stem cells lacking Med 1 fail to commit to the dental lineage, 2 Sox2-expressing stem cells extend into the differentiation zone and remain multi-potent due to reduced Notch1 signaling, and 3 epidermal fate is induced by calcium as demonstrated in dental epithelial cell cultures. These results demonstrate that Med1 is a master regulator in adult stem cells to govern epithelial cell fate.

  17. E-FAST-Exposure and Fate Assessment Screening Tool Version 2014

    Science.gov (United States)

    E-FAST estimates potential exposures to the general population and surface water concentrations based on releases from industrial operations and basic physical-chemical properties and fate parameters of the substance

  18. Prospects for Future Application of Fugacity Model to Fate Studying of POPs in China

    Institute of Scientific and Technical Information of China (English)

    Li Yong-fu; Cao Hong-ying

    2003-01-01

    POPs can stay long enough to diffuse and transfer sufficiently in the environment. Researches indicate that it's inadequate to study POPs' fate and environmental behavior, in order to get comprehensive knowledge of the POPs'fate and transfer processes in an area, experiment should be combined with model simulation. Recently multimedia models have become the primary choice in simulating organic pollutant's fate and assessing exposure risk to ecosystem for they can nearly represent the real environment. Among all models,with simple structure, less required parameters, fugacity model has been an efficient tool used widely on simulating the fate and transport of POPs and put into practice in many countries and areas successfully. On the basis of achievements in scientific research, this paper will emphatically take up the following three questions one by one that consist of fugacity model's principle, pivotal questions and application prospects in china.

  19. Prospects for Future Application of Fugacity Model to Fate Studying of POPs in China

    Institute of Scientific and Technical Information of China (English)

    LiYong-fu; CaoHong-ying

    2003-01-01

    POPs can stay long enough to diffuse and transfer sufficiently in the environment. Researches indicate that it's inadequate to study POPs' fate and environmental behavior, in order to get comprehensive knowledge of the POPs'' fate and transfer processes in an area, experiment should be combined with model simulation. Recently multimedia models have become the primary choice in simulating organic pollutant''s fate and assessing exposure risk to ecosystem for they can nearly represent the real environment. Among all models,with simple structure, less required parameters, fngacity model has been an efficient tool used widely on simulating the fate and transport of POPs and put into practice in many countries and areas successfully. On the basis of achievements in scientific research, this paper will emphatically take up the following three questions one by one that consist of fngacity model''s principle, pivotal questions and application prospects in China,

  20. Back and forth between cell fate specification and movement during vertebrate gastrulation.

    Science.gov (United States)

    Heisenberg, Carl-Philipp; Solnica-Krezel, Lilianna

    2008-08-01

    Animal body plan arises during gastrulation and organogenesis by the coordination of inductive events and cell movements. Several signaling pathways, such as BMP, FGF, Hedgehog, Nodal, and Wnt have well-recognized instructive roles in cell fate specification during vertebrate embryogenesis. Growing evidence indicates that BMP, Nodal, and FGF signaling also regulate cell movements, and that they do so through mechanisms distinct from those that specify cell fates. Moreover, pathways controlling cell movements can also indirectly influence cell fate specification by regulating dimensions and relative positions of interacting tissues. The current challenge is to delineate the molecular mechanisms via which the major signaling pathways regulate cell fate specification and movements, and how these two processes are coordinated to ensure normal development.

  1. Environmental fate of TCDD and Agent Orange and bioavailability to troops in Vietnam

    Energy Technology Data Exchange (ETDEWEB)

    Karch, N.J.; Watkins, D.K.; Ginevan, M.E. [Exponent, Inc., Washington, DC (United States); Young, A.L. [Oklahoma Univ., Norman, OK (United States)

    2004-09-15

    This paper reviews the environmental fate of Agent Orange and the contaminant, 2,3,7,8- tetrachlorodibenzo-p-dioxin (TCDD), and discusses how this affects the bioavailability of TCDD for ground troops in Vietnam.

  2. Prolonged Mitosis of Neural Progenitors Alters Cell Fate in the Developing Brain.

    Science.gov (United States)

    Pilaz, Louis-Jan; McMahon, John J; Miller, Emily E; Lennox, Ashley L; Suzuki, Aussie; Salmon, Edward; Silver, Debra L

    2016-01-06

    Embryonic neocortical development depends on balanced production of progenitors and neurons. Genetic mutations disrupting progenitor mitosis frequently impair neurogenesis; however, the link between altered mitosis and cell fate remains poorly understood. Here we demonstrate that prolonged mitosis of radial glial progenitors directly alters neuronal fate specification and progeny viability. Live imaging of progenitors from a neurogenesis mutant, Magoh(+/-), reveals that mitotic delay significantly correlates with preferential production of neurons instead of progenitors, as well as apoptotic progeny. Independently, two pharmacological approaches reveal a causal relationship between mitotic delay and progeny fate. As mitotic duration increases, progenitors produce substantially more apoptotic progeny or neurons. We show that apoptosis, but not differentiation, is p53 dependent, demonstrating that these are distinct outcomes of mitotic delay. Together our findings reveal that prolonged mitosis is sufficient to alter fates of radial glia progeny and define a new paradigm to understand how mitosis perturbations underlie brain size disorders such as microcephaly.

  3. Multimedia Environmental Fate and Speciation of Engineered Nanoparticles: A Probabilistic Modeling Approach

    NARCIS (Netherlands)

    Meesters, J.; Quik, J.T.K.; Koelmans, A.A.; Hendriks, A.J.; Meent, van de D.

    2016-01-01

    The robustness of novel multimedia fate models in environmental exposure estimation of engineered nanoparticles (ENPs) remains unclear, because of uncertainties in the emission, physicochemical properties and natural variability in environmental systems. Here, we evaluate the uncertainty in

  4. Regulation of cell fate and meristem maintenance in Arabidopsis root development

    NARCIS (Netherlands)

    ten Hove, C.A.

    2010-01-01

    Asymmetric cell division is an essential and universal mechanism for generating diversity and pattern in multicellular organisms. Divisions generating daughter cells different in size, shape, identity and function are fundamental to many developmental processes including fate specification, tissue p

  5. Three-Dimensional Subsurface Flow, Fate and Transport of Microbes and Chemicals (3DFATMIC) Model

    Science.gov (United States)

    This model simulates subsurface flow, fate and transport of contaminants that are undergoing chemical or biological transformations. The model is applicable to transient conditions in both saturated and unsaturated zones.

  6. Persistence and fate of some organophosphorus pesticides in sea sediments along east coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Sarkar, A.; SenGupta, R.

    Stability and fate of pesticides, monocrotophos, phosphamidon and DDVP, were studied in sediment samples collected along the east coast of India pH, salinity and exchangeable cations present in sediments exhibited profound influence on stability...

  7. Natural inorganic nanoparticles – formation, fate, and toxicity in the environment.

    Science.gov (United States)

    The synthesis, stability, and toxicity of engineered metal nanoparticles (ENPs) have been extensively studied during the past two decades. In contrast, research on the formation, fate and ecological effects of naturally occurring nanoparticles (NNPs) has become a focus of attent...

  8. Fate of IIT B52 Antiform Agent Across the Small Tank Tetraphenylborate Process

    Energy Technology Data Exchange (ETDEWEB)

    Calloway, T.B.

    2001-07-10

    The primary objective of these experiments was to determine the fate (partitioning) of the antifoam agent across the precipitation, concentration and washing cycles. A secondary objective of this experiment was to determine if insoluble aluminum formed during the STTP process.

  9. Commentary on: Christensen, Clayton M. : Disruptive Innovation. In: Soegaard, Mads and Dam, Rikke Friis (eds.). "Encyclopedia of Human-Computer Interaction". Aarhus, Denmark: The Interaction-Design.org Foundation. Available online at http://www.interaction-design.org/encyclopedia/disruptive_innovation.html

    NARCIS (Netherlands)

    Steen, M.G.D.

    2012-01-01

    Book : A disruptive technology or disruptive innovation is an innovation that helps create a new market and value network, and eventually goes on to disrupt an existing market and value network. The term is used in business and technology literature to describe innovations that improve a product or

  10. Commentary on: Christensen, Clayton M. : Disruptive Innovation. In: Soegaard, Mads and Dam, Rikke Friis (eds.). "Encyclopedia of Human-Computer Interaction". Aarhus, Denmark: The Interaction-Design.org Foundation. Available online at http://www.interaction-design.org/encyclopedia/disruptive_innovation.html

    NARCIS (Netherlands)

    Steen, M.G.D.

    2012-01-01

    Book : A disruptive technology or disruptive innovation is an innovation that helps create a new market and value network, and eventually goes on to disrupt an existing market and value network. The term is used in business and technology literature to describe innovations that improve a product or

  11. 基于 Web 的蔬菜领域本体概念和分类关系学习方法研究%Learning of Concepts and Taxonomic Relation for Vegetable Domain Ontology Based on Chinese Wiki Encyclopedia

    Institute of Scientific and Technical Information of China (English)

    杜亚茹; 孙琛; 赵明

    2015-01-01

    Concepts extraction is the basis of relationship learning ,axioms learning ,and other subtasks of ontology learning .In the context of the increasing interest in the use of Web data ,the underutilized structured information of Baidu Encyclopedia with the characteristic of wiki ,and the much lower concepts learning accuracy in agriculture than other do‐mains ,the methods of concepts extraction are researched for vegetable domain ontology .The experimental results reveal that the multi‐strategy of combing linguistics‐based techniques ,statistics‐based techniques and structured information of Baidu Encyclopedia raise the recall of concepts learning ,the hybrid statistical approach of the measures TFIDF and C‐value has im‐proved the precision remarkably .This research will promote progress in the area of agricultural ontology learning ,especially that of the Web‐based data in Chinese language .%本体学习是当前本体研究的热点之一。概念的抽取和分类关系的构建是本体学习的关键。领域概念的分类方式很多,如何根据不同的应用目的,生成合适的分类结构,是当前本体学习系统应该着重考虑的问题。论文提出了一种有指导的领域本体概念体系结构学习方法,该方法以中文 Web 上蔬菜领域非结构化文本为语料,将浅层句法分析等语言学方法与 TFIDF 和 C‐值等统计学方法相结合进行概念抽取;在分类关系抽取时,基于目标本体的已知一个分支,采用余弦距离计算概念与已知分支概念的语义距离,并结合概念之间的共现频度来确定层次及上下位关系。与目前中文本体的代表性方法相比,文中提出的方法在查全率和查准率方面有明显的提高。

  12. An evaluation of the environmental fate and behavior of munitions material (TNT, RDX) in soil and plant systems: Environmental fate and behavior of RDX

    Energy Technology Data Exchange (ETDEWEB)

    Cataldo, D.A.; Harvey, S.D.; Fellows, R.J.

    1990-08-01

    The objective of the present investigation was to elucidate the environmental behavior and fate of hexahydro-1,3,5-trinitro-1,3,5- triazine (RDX), particularly as related to its transport and chemical form in the food chain. To meet this goal, we needed to adapt and develop suitable analytical methodology to fractionate and characterize both RDX and RDX-derived residues in soil and plant matrices. Using the methodology that we developed, we assessed the chemical and physical fate of RDX in soils and plants. In general, the plant availability and plant mobility of RDX is substantially greater than that previously reported for TNT. 30 refs., 27 figs., 26 tabs.

  13. In Situ and Laboratory Studies on the Fate of Specific Organic Compounds in an Anerobic Landfill Leachate Plume, 2. Fate of Aromatic and Chlorinated Aliphatic Compounds

    DEFF Research Database (Denmark)

    Nielsen, Per Henning; Bjarnadóttir, Helga; Winter, Pia L.

    1995-01-01

    and laboratory batch microcosm experiments performed focusing on redox conditions, microbiology and the fate of 7 phenolic compounds. In this paper we present the results on the fate of 8 aromatic compounds and 4 chlorinated aliphatic compounds. Nitrobenzene was transformed at all distances from the landfill...... the landfill in Fe(IIl)-reducing conditions but not in NO3-reducing conditions at 350 m from the landfill. Abiotic processes apparently contributed to the transformation of tetrachloromethane. A local variation in the transformation of the chlorinated aliphatic hydrocarbons was observed at 2 m from...

  14. An evaluation of the environmental fate and behavior of munitions material (TNT, RDX) in soil and plant systems: Environmental fate and behavior of RDX

    Energy Technology Data Exchange (ETDEWEB)

    Cataldo, D.A.; Harvey, S.D.; Fellows, R.J.

    1990-08-01

    The objective of the present investigation was to elucidate the environmental behavior and fate of hexahydro-1,3,5-trinitro-1,3,5- triazine (RDX), particularly as related to its transport and chemical form in the food chain. To meet this goal, we needed to adapt and develop suitable analytical methodology to fractionate and characterize both RDX and RDX-derived residues in soil and plant matrices. Using the methodology that we developed, we assessed the chemical and physical fate of RDX in soils and plants. In general, the plant availability and plant mobility of RDX is substantially greater than that previously reported for TNT. 30 refs., 27 figs., 26 tabs.

  15. Multimedia Environmental Fate and Speciation of Engineered Nanoparticles: A Probabilistic Modeling Approach

    OpenAIRE

    Meesters, J.A.J.; Quik, J.T.K.; Koelmans, A.A.; Hendriks, A.J.; Meent, D. van de

    2016-01-01

    The robustness of novel multimedia fate models in environmental exposure estimation of engineered nanoparticles (ENPs) remains unclear, because of uncertainties in the emission, physicochemical properties and natural variability in environmental systems. Here, we evaluate the uncertainty in predicted environmental concentrations (PECs) by using the SimpleBox4nano (SB4N) model. Monte Carlo (MC) simulations were performed on the environmental fate, concentrations and speciation of nano-CeO2, -T...

  16. A review of the fate of micropollutants in wastewater treatment plants

    OpenAIRE

    Margot, Jonas; Rossi, Luca; Barry, David Andrew; Holliger, Christof

    2015-01-01

    Municipal wastewaters are contaminated by a wide range of chemicals, from surfactants to heavy metals, including pharmaceutical residues, personal care products, various household chemicals, and biocides/pesticides. Their release into the environment, where they may generate adverse effects on aquatic organisms, depends on their fate in wastewater treatment plants (WWTPs). The sources, the typical concentrations and the fate of more than 160 micropollutants of various classes in conventional ...

  17. Fate of Malathion in an Activated Sludge Municipal Wastewater Treatment System

    Science.gov (United States)

    2013-03-01

    treatment plant ( WWTP ). There have been few studies to document the fate of these CWAs when subjected to a municipal wastewater treatment process. This...municipal activated sludge (AS) WWTP . Results show that v malathion may degrade in an AS WWTP as approximately 90% of an initial concentration of 4.25 mg...the decontamination wastewater must be disposed of as hazardous waste or possibly treated at a WWTP . There are no studies that document the fate of

  18. Remembrance and Architecture the House of Fates Project

    Directory of Open Access Journals (Sweden)

    Benárd Aurél

    2016-07-01

    Full Text Available The changes which took place a quarter of a century ago in the countries of Europe’s Eastern Bloc transformed the social conventions of the time. A kind of social dialog has been started, about the Holocaust amongst other things. New memorials and monuments dedicated to the Holocaust have been constructed in the countries of the region as a result. Several phases can be identified in the building of monuments to the Holocaust over the past 25 years. These changes in the process of recollection and in the building of the monuments themselves are typified by the House of Fates project. The memorial center was built in Budapest for the 70th anniversary of the Holocaust. But the changes in recollection did not stop there, did not come to a standstill in Hungary. It is a mark of the sensitivity of the subject that although the center was finished by the fall of 2015, it has still not opened its gates to the public. In the meantime the project has appeared in several Hungarian professional journals, however these articles do not venture far beyond the realm of basic description. Here we are attempting to analyze the project architecturally. Our analysis shows how the initial usage of primary symbols turns to more contemplative, more abstract images and devices.

  19. Generation of bivalent chromatin domains during cell fate decisions

    Directory of Open Access Journals (Sweden)

    De Gobbi Marco

    2011-06-01

    Full Text Available Abstract Background In self-renewing, pluripotent cells, bivalent chromatin modification is thought to silence (H3K27me3 lineage control genes while 'poising' (H3K4me3 them for subsequent activation during differentiation, implying an important role for epigenetic modification in directing cell fate decisions. However, rather than representing an equivalently balanced epigenetic mark, the patterns and levels of histone modifications at bivalent genes can vary widely and the criteria for identifying this chromatin signature are poorly defined. Results Here, we initially show how chromatin status alters during lineage commitment and differentiation at a single well characterised bivalent locus. In addition we have determined how chromatin modifications at this locus change with gene expression in both ensemble and single cell analyses. We also show, on a global scale, how mRNA expression may be reflected in the ratio of H3K4me3/H3K27me3. Conclusions While truly 'poised' bivalently modified genes may exist, the original hypothesis that all bivalent genes are epigenetically premarked for subsequent expression might be oversimplistic. In fact, from the data presented in the present work, it is equally possible that many genes that appear to be bivalent in pluripotent and multipotent cells may simply be stochastically expressed at low levels in the process of multilineage priming. Although both situations could be considered to be forms of 'poising', the underlying mechanisms and the associated implications are clearly different.

  20. The fate of sulfur during rapid pyrolysis of scrap tires.

    Science.gov (United States)

    Hu, Hongyun; Fang, Yuan; Liu, Huan; Yu, Ren; Luo, Guangqian; Liu, Wenqiang; Li, Aijun; Yao, Hong

    2014-02-01

    The fate of sulfur during rapid pyrolysis of scrap tires at temperatures from 673 to 1073K was investigated. Sulfur was predominant in the forms of thiophenic and inorganic sulfides in raw scrap tires. In the pyrolysis process, sulfur in organic forms was unstable and decomposed, leading to the sulfur release into tar and gases. At 673 and 773K, a considerable amount of sulfur was distributed in tar. Temperature increasing from 773 to 973K promoted tar decomposition and facilitated sulfur release into gases. At 1073K, the interactions between volatiles and char stimulated the formation of high-molecular-weight sulfur-containing compounds. After pyrolysis, almost half of the total content of sulfur in raw scrap tires still remained in the char and was mostly in the form of sulfides. Moreover, at temperatures higher than 873K, part of sulfur in the char was immobilized in the sulfates. In the pyrolysis gases, H2S was the main sulfur-containing gas. Increasing temperature stimulated the decomposition of organic polymers in scrap tires and more H2S was formed. Besides H2S, other sulfur-containing gases such as CH3SH, COS and SO2 were produced during the rapid pyrolysis of scrap tires.

  1. Leaf litter ecological fate in the Schelde estuary in Belgium

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Two dominant species of Willow (Salix triandra) and Reed(Phragmites australis) along the Schelde estuary (in Belgium) wereselected in this research. The pigments of higher plant was used asbiomarkers, the decomposition process of the two species werestudied after they fall into the Schelde estuary. After statisticalanalysis (Spearman rank order correlation, p<0.05), the results hasshown the decomposition dynamics pattern of the pigments, and thewillow showed different pattern in comparing with the reed, eg.Chlorophyll-a decomposition dynamics for willow is: y1 = 12196x2 -175895x + 1E + 06 + k, R2 = 0.5706 while for reed is: y2 = -37878x2+ 229782x + 734282 + k, R2 = 0.9065. The precise time of the leaflitter spent in the water was also calculated as were less than 24days, 24-37 days, longer than 37 days (willow) and less than 24days, longer than 24 days (reed), the leaf litter fate of the two -Process, Institute of Applied Ecology, Chinese Academy of Sciencesdominant species in the Schelde estuary was also compared.

  2. Atomism, Lynceus, and the fate of seventeenth-century microscopy.

    Science.gov (United States)

    Lüthy, C H

    1996-01-01

    Recent scholarship, focusing on the rapid decline of microscopy after the late 1680's, has shown that the limitations of microscopy and the ambivalent meaning of its findings led to a wide-spread sense of frustration with the new instrument. The present article tries to connect this fall from favor with the microscope's equally surprising but hitherto little noticed late rise to prominence. The crucial point is that when the microscope, more than a decade after the telescope, finally managed to arouse the interest of natural philosophers, it did so as a corpuscularian tool, and as such it came to share the difficult fate of seventeenth-century corpuscularianism. The essay ends with the claim that the fall of microscopy was not only due to the failure of microscopy to corroborate corpuscularianism, but also to the changing definition of natural philosophy in the late seventeenth and early eighteenth centuries and to the separation of the domains of living matter (to which the microscope found itself confined) from a physica whose recent mathematical framework excluded the organic world.

  3. Fate of Fluazinam in Pepper and Soil After Application

    Institute of Scientific and Technical Information of China (English)

    DONG Feng-shou; YANG Shuang; LIU Xin-gang; SUN Jian-peng; ZHENG Yong-quan; LI Chong-jiu; YAO Jian-ren

    2008-01-01

    To discover the fate of fluazinam after its application in pepper field,an efficient residual analytical method for determining fluazinam in pepper and soil was developed.The samples were extracted by acetone,cleaned up by solid-phase extraction (SPE)florisil cartridge,and determined by gas chromatography with electronic capture detector(ECD).The recoveries ranged from 80 to 94.6%,with repeatability relative standard deviation ≤9.3% at spiking levels of 0.1-1 mg kg-1.The residue dynamics of fluazinam in pepper and soil were studied in a field plot.The experiment data showed that the halflives of fluazinam in peppers and soils were 2.5-3.7 days and 1.2-4.2 days,respectively.When the pepper was treated by fluazinam 50% suspension concentrate(SC)at 495 g ha-1 4 times at 7-day intervals,the fluazinam in pepper on the 7th day after the last application was all below 0.06 mg kg-1,which was below the maximum residue limit(MRL)fixed in Korea(0.3mg kg-1).It is implied that fluazinam in pepper is nonpersistent.The results suggested that fluazinam 50% SC should be used in a pepper field at most for 4 times,and the pre-harvest interval should be 7 days.

  4. Fate modelling of chemical compounds with incomplete data sets

    DEFF Research Database (Denmark)

    Birkved, Morten; Heijungs, Reinout

    2011-01-01

    in an approximate way. The idea is that not all data needed in a multi-media fate and exposure model are completely independent and equally important, but that there are physical-chemical and biological relationships between sets of chemical properties. A statistical model is constructed to underpin this assumption......, and to provide simplified proxies for the more complicated “real”model relationships. In the presented study two approaches for the reduction of the data demand associated with characterization of chemical emissions in USEtoxTM are tested: The first approach yields a simplified set of mode of entry specific meta......-models with a data demand of app. 63 % (5/8) of the USEtoxTM characterization model. The second yields a simplified set of mode of entry specific meta-models with a data demand of 75 % (6/8) of the original model. The results of the study indicate that it is possible to simplify characterization models and lower...

  5. Niche as a determinant of word fate in online groups.

    Directory of Open Access Journals (Sweden)

    Eduardo G Altmann

    Full Text Available Patterns of word use both reflect and influence a myriad of human activities and interactions. Like other entities that are reproduced and evolve, words rise or decline depending upon a complex interplay between their intrinsic properties and the environments in which they function. Using Internet discussion communities as model systems, we define the concept of a word niche as the relationship between the word and the characteristic features of the environments in which it is used. We develop a method to quantify two important aspects of the size of the word niche: the range of individuals using the word and the range of topics it is used to discuss. Controlling for word frequency, we show that these aspects of the word niche are strong determinants of changes in word frequency. Previous studies have already indicated that word frequency itself is a correlate of word success at historical time scales. Our analysis of changes in word frequencies over time reveals that the relative sizes of word niches are far more important than word frequencies in the dynamics of the entire vocabulary at shorter time scales, as the language adapts to new concepts and social groupings. We also distinguish endogenous versus exogenous factors as additional contributors to the fates of words, and demonstrate the force of this distinction in the rise of novel words. Our results indicate that short-term nonstationarity in word statistics is strongly driven by individual proclivities, including inclinations to provide novel information and to project a distinctive social identity.

  6. Mechanical memory and dosing influence stem cell fate

    Science.gov (United States)

    Yang, Chun; Tibbitt, Mark W.; Basta, Lena; Anseth, Kristi S.

    2014-06-01

    We investigated whether stem cells remember past physical signals and whether these can be exploited to dose cells mechanically. We found that the activation of the Yes-associated protein (YAP) and transcriptional coactivator with PDZ-binding domain (TAZ) as well as the pre-osteogenic transcription factor RUNX2 in human mesenchymal stem cells (hMSCs) cultured on soft poly(ethylene glycol) (PEG) hydrogels (Young’s modulus E ~ 2 kPa) depended on previous culture time on stiff tissue culture polystyrene (TCPS; E ~ 3 GPa). In addition, mechanical dosing of hMSCs cultured on initially stiff (E ~ 10 kPa) and then soft (E ~ 2 kPa) phototunable PEG hydrogels resulted in either reversible or—above a threshold mechanical dose—irreversible activation of YAP/TAZ and RUNX2. We also found that increased mechanical dosing on supraphysiologically stiff TCPS biases hMSCs towards osteogenic differentiation. We conclude that stem cells possess mechanical memory—with YAP/TAZ acting as an intracellular mechanical rheostat—that stores information from past physical environments and influences the cells’ fate.

  7. Impact of Acidification on Pollutants Fate and Soil Filtration Function

    Directory of Open Access Journals (Sweden)

    Jarmila Makovniková

    2014-12-01

    Full Text Available The objective of this paper was to investigate the effects of simulated acid load on the fate of inorganic pollutants (Cd, Pb, soil sorption potential, soil filtration func-tion. We made use of a short-term acidification pot experiment with grown plant of spring barley cultivated at 4 different soil types (Fluvisol, Cambisol, Stagnosol, Podzol. The potential of soil filtration was evaluated according to the Eq.: [Soil filtration function]=[Potential of soil sorbents]+[Potential of total content of inor-ganic pollutants]. Potential of soil sorbents (PSS is defined by qualitative (pH, or-ganic matter quality - A400/600 and quantitative factors (carbon content-Cox, humus layer thickness-H according to the Eq.:[PSS]=F(pH+F(A465/665+F(Cox*F(H. Acid load significantly influenced soil sorption potential and thus affected increase in Cd and Pb mobility what was reflected in their transfer into the plants. Results of soil filtration function showed significant change of filtration function in Cambisol.

  8. Occurrence and fate of organic contaminants during onsite wastewater treatment.

    Science.gov (United States)

    Conn, Kathleen E; Barber, Larry B; Brown, Gregory K; Siegrist, Robert L

    2006-12-01

    Onsite wastewater treatment systems serve approximately 25% of the U.S. population. However, little is known regarding the occurrence and fate of organic wastewater contaminants (OWCs), including endocrine disrupting compounds, during onsite treatment. A range of OWCs including surfactant metabolites, steroids, stimulants, metal-chelating agents, disinfectants, antimicrobial agents, and pharmaceutical compounds was quantified in wastewater from 30 onsite treatment systems in Summit and Jefferson Counties, CO. The onsite systems represent a range of residential and nonresidential sources. Eighty eight percent of the 24 target compounds were detected in one or more samples, and several compounds were detected in every wastewater sampled. The wastewater matrices were complex and showed unique differences between source types due to differences in water and consumer product use. Nonresidential sources generally had more OWCs at higher concentrations than residential sources. Additional aerobic biofilter-based treatment beyond the traditional anaerobic tank-based treatment enhanced removal for many OWCs. Removal mechanisms included volatilization, biotransformation, and sorption with efficiencies from 99% depending on treatment type and physicochemical properties of the compound. Even with high removal rates during confined unit onsite treatment, OWCs are discharged to soil dispersal units at loadings up to 20 mg/m2/d, emphasizing the importance of understanding removal mechanisms and efficiencies in onsite treatment systems that discharge to the soil and water environments.

  9. Fate of pharmaceuticals and pesticides in fly larvae composting

    Energy Technology Data Exchange (ETDEWEB)

    Lalander, C., E-mail: cecilia.lalander@slu.se [Department of Energy and Technology, Swedish University of Agricultural Sciences (Sweden); Senecal, J.; Gros Calvo, M. [Department of Energy and Technology, Swedish University of Agricultural Sciences (Sweden); Ahrens, L.; Josefsson, S.; Wiberg, K. [Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences (Sweden); Vinnerås, B. [Department of Energy and Technology, Swedish University of Agricultural Sciences (Sweden)

    2016-09-15

    A novel and efficient organic waste management strategy currently gaining great attention is fly larvae composting. High resource recovery efficiency can be achieved in this closed-looped system, but pharmaceuticals and pesticides in waste could potentially accumulate in every loop of the treatment system and spread to the environment. This study evaluated the fate of three pharmaceuticals (carbamazepine, roxithromycin, trimethoprim) and two pesticides (azoxystrobin, propiconazole) in a fly larvae composting system and in a control treatment with no larvae. It was found that the half-life of all five substances was shorter in the fly larvae compost (< 10% of control) and no bioaccumulation was detected in the larvae. Fly larvae composting could thus impede the spread of pharmaceuticals and pesticides into the environment. - Highlights: • Degradation of pharmaceuticals and pesticides in fly larvae composting (FLC). • Half-life considerably shorter in FLC than in control with no larvae. • Half-life of carbamazepine was less than two days in FLC. • No bioaccumulation in larvae detected. • FLC could impede the spreading of pharmaceuticals and pesticide in the environment.

  10. Msx2 in ameloblast cell fate and activity

    Directory of Open Access Journals (Sweden)

    Sylvie eBabajko

    2015-01-01

    Full Text Available While many effectors have been identified in enamel matrix and cells via genetic studies, physiological networks underlying their expression levels and thus the natural spectrum of enamel thickness and degree of mineralization are now just emerging. Several transcription factors are candidates for enamel gene expression regulation and thus the control of enamel quality. Some of these factors, such as MSX2, are mainly confined to the dental epithelium. MSX2 homeoprotein controls several stages of the ameloblast life cycle. This chapter introduces MSX2 and its target genes in the ameloblast and provides an overview of knowledge regarding its effects in vivo in transgenic mouse models. Currently available in vitro data on the role of MSX2 as a transcription factor and its links to other players in ameloblast gene regulation are considered. MSX2 modulations are relevant to the interplay between developmental, hormonal and environmental pathways and in vivo investigations, notably in the rodent incisor, have provided insight into dental physiology. Indeed, in vivo models are particularly promising for investigating enamel formation and MSX2 function in ameloblast cell fate.MSX2 may be central to the temporal-spatial restriction of enamel protein production by the dental epithelium and thus regulation of enamel quality (thickness and mineralization level under physiological and pathological conditions. Studies on MSX2 show that amelogenesis is not an isolated process but is part of the more general physiology of coordinated dental-bone complex growth.

  11. Fate modeling of phenanthrene with regional variation in Tianjin, China

    Energy Technology Data Exchange (ETDEWEB)

    Tao, S.; Cao, H.; Liu, W.; [and others] [Peking University, Beijing (China). Dept. of Urban and Environmental Sciences

    2003-06-01

    A multimedia fate model with spatially resolved air and soil phases was developed and evaluated. The model was used for calculation of phenanthrene concentrations in air, water, soil and sediment in Tianjin area and transport flxues between the adjacent bulk phases under steady-state assumption. Both air and soil phases were divided into 3113 individual compartments of 4 km{sup 2} each to assess the spatial variation of phenanthrene concentrations and fluxes. Independently measured phenanthrene concentrations in air, water and soil were used for model validation. The large amount of coal used seems to be the major source of phenanthrene in the Tainjin area. The spatial distribution patterns of phenanthrene in both air and soil were well modeled. Spatially, however, the model overestimated the soil phenanthrene level at low concentration range and underestimated it at high concentration range. The calculated distribution of phenanthrene in the air matches well with the emission from fossil fuel combustion, while the calculated distribution pattern in the soil is similar to that observed. 36 refs., 10 figs.

  12. Origin, fate and dynamics of macrophages at CNS interfaces

    Science.gov (United States)

    Goldmann, Tobias; Jordão, Marta Joana Costa; Wieghofer, Peter; Prutek, Fabiola; Hagemeyer, Nora; Frenzel, Kathrin; Staszewski, Ori; Kierdorf, Katrin; Amann, Lukas; Krueger, Martin; Locatelli, Giuseppe; Hochgarner, Hannah; Zeiser, Robert; Epelman, Slava; Geissmann, Frederic; Priller, Josef; Rossi, Fabio; Bechmann, Ingo; Kerschensteiner, Martin; Linnarsson, Sten; Jung, Steffen; Prinz, Marco

    2016-01-01

    Perivascular, meningeal and choroid plexus macrophages are non-parenchymal macrophages that mediate immune responses at brain boundaries. Although the origin of parenchymal microglia has recently been elucidated, much less is known about the precursors, the underlying transcriptional program and the dynamics of the other macrophages in the central nervous system (CNS). It has been assumed that they have a high turnover with blood-borne monocytes. However, large scale single-cell RNA-sequencing reveals a striking molecular overlap between perivascular macrophages and microglia but not monocytes. Using several fate mapping approaches and parabiosis we demonstrate that CNS macrophages arise from yolk sac precursors during embryonic development and remain a stable population. Notably, the generation of CNS macrophages relies on the transcription factor Pu.1 whereas myb, Batf3 and Nr4a1 are not required. Upon autoimmune inflammation, macrophages undergo extensive self-renewal by local proliferation. Our data provide challenging new insights into brains innate immune system. PMID:27135602

  13. The fate of riverine nutrients on Arctic shelves

    Directory of Open Access Journals (Sweden)

    V. Le Fouest

    2013-06-01

    Full Text Available Present and future levels of primary production (PP in the Arctic Ocean (AO depend on nutrient inputs to the photic zone via vertical mixing, upwelling and external sources. In this regard, the importance of horizontal river supply relative to oceanic processes is poorly constrained at the pan-Arctic scale. We compiled extensive historical (1954–2012 data on discharge and nutrient concentrations to estimate fluxes of nitrate, soluble reactive phosphate (SRP, silicate, dissolved organic carbon (DOC, dissolved organic nitrogen (DON, particulate organic nitrogen (PON and particulate organic carbon (POC from 9 large Arctic rivers and assess their potential impact on the biogeochemistry of shelf waters. Several key points can be emphasized from this analysis. The contribution of riverine nitrate to new PP (PPnew is very small at the regional scale (9 mol N may exceed the combined riverine supply of nitrate and ammonium (3.4 × 109 mol N. Nevertheless, overall nitrogen limitation of AO phytoplankton is expected to persist even when projected increases of riverine DON and nitrate supply are taken into account. This analysis underscores the need to better contrast oceanic nutrient supply processes with the composition and fate of changing riverine nutrient deliveries in future scenarios of plankton community structure, function and production in the coastal AO.

  14. The fate of fibular osteotomies performed during high tibial osteotomy.

    Science.gov (United States)

    Bicer, Elcil Kaya; Basa, Can Doruk; Gunay, Huseyin; Aydogdu, Semih; Sur, Hakki

    2016-08-01

    High tibial osteotomy (HTO) is an important treatment alternative in isolated single compartment knee osteoarthritis. To achieve adequate mechanical axis corrections in the lower extremity fibula is also osteotomized concomitantly. The aim of this study was to compare the union rates of proximal and diaphyseal fibular osteotomies accompanying high tibial osteotomies. Sixty-seven knees of sixty-three patients who had undergone HTO were retrospectively evaluated. The patients were grouped according to the level of the fibular osteotomy (FO). In group I, the level of FO was proximal, and in group II, it was at the level of junction of middle and distal third of diaphysis. The union rates of FOs at two different levels were compared. The influence of the presence of displacement at the osteotomy site and apposition between bone ends on union was also evaluated. Fifty-nine of sixty-seven FOs (88.06 %) were united. The union rate of proximal FOs was significantly greater than diaphyseal osteotomies (p < 0.0001); 97.9 % of proximal FOs were united, whereas this ratio was 65 % for the diaphyseal FOs. The presence of displacement at the FO and apposition between bone ends significantly influenced the bony union rate (p values 0.035 and <0.0001, respectively). Union rates and nonunion characteristics of FO might differ according to its level, apposition of bone ends, and contact area. The fate of FO might also affect the union of HTO.

  15. Agrochemical fate models applied in agricultural areas from Colombia

    Science.gov (United States)

    Garcia-Santos, Glenda; Yang, Jing; Andreoli, Romano; Binder, Claudia

    2010-05-01

    The misuse application of pesticides in mainly agricultural catchments can lead to severe problems for humans and environment. Especially in developing countries where there is often found overuse of agrochemicals and incipient or lack of water quality monitoring at local and regional levels, models are needed for decision making and hot spots identification. However, the complexity of the water cycle contrasts strongly with the scarce data availability, limiting the number of analysis, techniques, and models available to researchers. Therefore there is a strong need for model simplification able to appropriate model complexity and still represent the processes. We have developed a new model so-called Westpa-Pest to improve water quality management of an agricultural catchment located in the highlands of Colombia. Westpa-Pest is based on the fully distributed hydrologic model Wetspa and a fate pesticide module. We have applied a multi-criteria analysis for model selection under the conditions and data availability found in the region and compared with the new developed Westpa-Pest model. Furthermore, both models were empirically calibrated and validated. The following questions were addressed i) what are the strengths and weaknesses of the models?, ii) which are the most sensitive parameters of each model?, iii) what happens with uncertainties in soil parameters?, and iv) how sensitive are the transfer coefficients?

  16. Environmental occurrence, fate and transformation of benzodiazepines in water treatment.

    Science.gov (United States)

    Kosjek, T; Perko, S; Zupanc, M; Zanoški Hren, M; Landeka Dragičević, T; Zigon, D; Kompare, B; Heath, E

    2012-02-01

    Benzodiazepine derivatives are prescribed in large quantities globally and are potentially new emerging environmental contaminants. Unfortunately, a dearth of data exists concerning occurrence, persistence and fate in the environment. This paper redresses this by reviewing existing literature, assessing the occurrence of selected benzodiazepine anxiolytics (diazepam, oxazepam and bromazepam) in wastewater influent and effluent and surface water from Slovenia, evaluating their removal during water treatment and identifying the transformation products formed during water treatment. Their occurrence was monitored in hospital effluent, river water and in wastewater treatment plant influent and effluent. The study reveals the presence of benzodiazepine derivatives in all samples with the highest amounts in hospital effluents: 111 ng L(-1), 158 ng L(-1) and 72 ng L(-1) for diazepam, bromazepam and oxazepam, respectively. Removal efficiencies with respect to biological treatment of diazepam were 16-18% (oxic), 18-32% (anoxic→oxic), 53-76% (oxic→anoxic) and 83% (oxic→anoxic→oxic→anoxic cascade bioreactors), while the removal oxazepam was 20-24% under anoxic conditions. Coupled biological and photochemical treatment followed by the adsorption to activated carbon resulted in a removal efficiency of 99.99%. Results reveal the recalcitrant nature of benzodiazepine derivatives and suggest that only combinational treatment is sufficient to remove them. In addition, eight novel diazepam and four novel oxazepam transformation products are reported. Copyright © 2011 Elsevier Ltd. All rights reserved.

  17. Fate of toxic potato glycoalkaloids in a potato field.

    Science.gov (United States)

    Jensen, Pia H; Strobel, Bjarne W; Hansen, Hans Christian B; Jacobsen, Ole Stig

    2009-04-08

    The toxic glycoalkaloids, alpha-solanine and alpha-chaconine, are present in all parts of the potato plant and are possibly transferred to the terrestrial environment. The amounts of glycoalkaloids in plant, soil, and groundwater were followed in a potato field to investigate their distribution and fate during the season. The amount of glycoalkaloids in the plants was up to 25 kg/ha during maturity and decreased to below 0.63 kg/ha during plant senescence. The glycoalkaloids were detected in the upper soil (up to 0.6 kg/ha); this amount accounted only for a minor fraction of the amount present in the plants. Maximum glycoalkaloid concentration of 2.8 mg/kg dry weight soil was detected in September. Dissipation during winter appeared to be slow because glycoalkaloids were still present in the soil in March. No traces of glycoalkaloids were detected in the groundwater (detection limit 0.2 microg/L). From these results, the leaching potential of the glycoalkaloids is evaluated to be small.

  18. Fate of triclocarban during soil aquifer treatment: Soil column studies

    KAUST Repository

    Essandoh, H. M K

    2010-04-01

    There are current concerns about the presence of persistent chemicals in recharge water used in soil aquifer treatment systems. Triclocarban (TCC) has been reported as a persistent, high production volume chemical with the potential to bioaccumulate in the environment. It is also known to have adverse effects such as toxicity and suspected endocrine disruption. This study was carried out to study the fate of TCC in soil aquifer treatment (SAT) through laboratory simulations in a soil column. The system performance was evaluated with regards to TCC influent concentration, sand (column) depth, and residence time. Results obtained confirmed the ability of SAT to reduce TCC concentrations in wastewater. Sorption and biodegradation were responsible for TCC removal, the latter mechanism however being unsustainable. The removal efficiency was found to be dependent on concentration and decreased over time and increased with column depth. Within the duration of the experimental run, TCC negatively impacted on treatment performance through a reduction in COD removals observed in the column. © IWA Publishing 2010.

  19. On the Fate of Processed Matter in Dwarf Galaxies

    CERN Document Server

    Silich, S A; Silich, Sergey A.; Tenorio-Tagle, Guillermo

    1998-01-01

    Two dimensional calculations of the evolution of remnants generated by the strong mechanical energy deposited by stellar clusters in dwarf galaxies (M \\si $10^9 - 10^{10}$ \\msun) are presented. The evolution is followed for times longer than both the blowout time and the presumed span of energy injection generated by a coeval massive stellar cluster. The remnants are shown to end up wrapping around the central region of the host galaxy, while growing to kpc-scale dimensions. Properties of the remnants such as luminosity, size, swept up mass, and expansion speed are given as a function of time for all calculated cases. The final fate of the swept-up galactic gas and of the matter processed by the central starburst is shown to be highly-dependent on the properties of the low density galactic halo. Superbubbles powered by star clusters, with properties similar to those inferred from the observations, slow down in the presence of an extended halo to expansion speeds smaller than the host galaxy escape velocity. V...

  20. The fate of alpha dynamos at large $Rm$

    CERN Document Server

    Cameron, Alexandre

    2016-01-01

    At the heart of today's solar magnetic field evolution models lies the alpha dynamo description. In this work, we investigate the fate of alpha-dynamos as the magnetic Reynolds number $Rm$ is increased. Using Floquet theory, we are able to precisely quantify mean field effects like the alpha and beta effect (i) by rigorously distinguishing dynamo modes that involve large scale components from the ones that only involve small scales, and by (ii) providing a way to investigate arbitrary large scale separations with minimal computational cost. We apply this framework to helical and non-helical flows as well as to random flows with short correlation time. Our results determine that the alpha-description is valid for $Rm$ smaller than a critical value $Rm_c$ at which small scale dynamo instability starts. When $Rm$ is above $Rm_c$ the dynamo ceases to follow the mean field description and the growth rate of the large scale modes becomes independent of the scale separation while the energy in the large scale modes ...