Effects of lead pollution on Ammonia parkinsoniana (foraminifera): ultrastructural and microanalytical approaches.

Science.gov (United States)

Frontalini, F; Curzi, D; Giordano, F M; Bernhard, J M; Falcieri, E; Coccioni, R

2015-01-30

The responses of Ammonia parkinsoniana (Foraminifera) exposed to different concentrations of lead (Pb) were evaluated at the cytological level. Foraminifera-bearing sediments were placed in mesocosms that were housed in aquaria each with seawater of a different lead concentration. On the basis of transmission electron microscopy and environmental scanning electron microscopy coupled with energy dispersive spectrometer analyses, it was possible to recognize numerous morphological differences between untreated (i.e., control) and treated (i.e., lead enrichment) specimens. In particular, higher concentrations of this pollutant led to numerical increase of lipid droplets characterized by a more electron-dense core, proliferation of residual bodies, a thickening of the organic lining, mitochondrial degeneration, autophagosome proliferation and the development of inorganic aggregates.  All these cytological modifications might be related to the pollutant-induced stress and some of them such as the thickening of organic lining might suggest a potential mechanism of protection adopted by foraminifera.

An endemic post-CTB Pseudorhapydionina (foraminifera) from the Pyrenean palaeobioprovince

Science.gov (United States)

Consorti, Lorenzo; Caus, Esmeralda

2015-04-01

and Orbitokathina vonderschmitti, among others. All of this fauna that seems restricted to the Pyrenean palaeobioprovince are late Cretaceous GCMC newcomers. Thus, the presence of such morphotype in the deposits of the Late Cretaceous GCMC of the Pyrenean palaeobioprovincie arises the followings questions: is the Pyrenean taxon a CTB survivor? Or, are we faced with a morphological convergence? Positive answering to the first question would implicate that Pseudorhapydionina could have successfully migrated from the western Tethyan (Iberian Basin) to the Pyrenean Basin before the communication was stopped, without reaching an appropriate colonizing area, probably due to the different oceanographic conditions. But, the change of those conditions during the late Coniacian- early Santonian times, as it is demonstrated by the abundance of symbiont-bearing LBF taxa, had favored the installation of Pseudorhapydionina in the Santonian shallow-water environments. The hypothesis of a morphological convergence could be explained by the quite simple architecture of the present taxon. Notwithstanding, following the actual taxonomical classification in foraminifera, the presence of radial septula, which does not alternate with the intercameral foramina, and the absence of pillars definitively ascribed our specimens to the genus Pseudorhapydionina.

The presence of the Indo-Pacific symbiont-bearing foraminifer Amphistegina lobifera in Greek coastal ecosystems (Aegean Sea, Eastern Mediterranean

Directory of Open Access Journals (Sweden)

M.V. TRIANTAPHYLLOU

2009-12-01

Full Text Available During the last decades, hundreds of species of Indo-Pacific origin from the Red Sea have traversed the Suez Canal and settled in the Eastern Mediterranean. Nowadays, Amphistegina lobifera Larsen, is known to be a successful immigrant that is widely distributed in the coastal ecosystems of the Eastern Mediterranean Sea. Amphistegina is the most common epiphytic, symbiont- bearing large foraminifer. In this study we provide additional data on the presence of this species in the coastal ecosystems of Aegean Sea, Greece. The high relative abundance of A. lobifera is the result of very successful adaptation of this species to local conditions and suggests that it has become a significant part of the epiphytic foraminiferal fauna.

Microfacies analysis of foraminifera rich sedimentary rocks from the Desert Plateau, central Egypt.

Science.gov (United States)

Karnitschar, C.; Briguglio, A.; Hohenegger, J.

2012-04-01

Microfacies analysis on some samples from the Thebes Group have been carried on by means of thin sections. The study area is included in the Libyan Desert Plateau (central Egypt) at following coordinates N27° 36'30.58" E29° 44'58.34", near the biggest dune of Egypt, the Ghard Abu Muharik. Because of the round shape of the rocks and the desert patina on the surface they could easily be classified as the so called "Melonstones", which are located more southwards and mainly composed by stromatolites. On the contrary, the investigated samples show a completely different fauna and therefore have been separated from the "Melonstones". Even if shape and size are very similar and the desert patina covers all surfaces the same way the differences are impressive. To investigate the samples, two thin-sections have been prepared and analyzed at the microscope. The observed fauna is composed by: agglutinated benthic foraminifera (e.g., Dictyoconus egypticus), complex larger miliolids (e.g., Pseudolacazina cf. danatae, Fabularia sp.), alveolinids (Alveolina vredenburgi), green algae (Dasycladaceae), echinoids and corals. Because of the presence of symbionts bearing larger benthic foraminifera, which need light to feed photosymbionts, the rock was formed in a shallow water environment. With the abundant rock-building benthic foraminifera and calcareous algae the limestone shows a tendency to the packstone/wackestone facies. Based on the presence of Alveolina vredenburgi, the age of the samples can be estimate as lowermost Eocene belonging to the shallow benthic zone 5 (sensu Serra-Kiel et al., 1998). According the obtained data on stratigraphy and palaeoecology, a partial palaeoenvironmental reconstruction is possible for the Libyan Desert Plateau where outcrops are largely missing. Because of the round shape of the samples and the patina which covers them all around it can be assumed that they have been transported from longer distance. According to the geological map of the

Zooxanthellar symbionts shape host sponge trophic status through translocation of carbon.

Science.gov (United States)

Weisz, Jeremy B; Massaro, Andrew J; Ramsby, Blake D; Hill, Malcolm S

2010-12-01

Sponges belonging to the genus Cliona are common inhabitants of many coral reefs, and as bioeroders, they play an important role in the carbonate cycle of the reef. Several Cliona species maintain intracellular populations of dinoflagellate zooxanthellae (i.e., Symbiodinium spp.), which also form symbioses with a variety of other invertebrates and protists (e.g., corals, molluscs, foraminifera). Unlike the case of coral symbioses, however, almost nothing is known of the metabolic interaction between sponges and their zooxanthella symbionts. To assess this interaction, we performed a tracer experiment to follow C and N in the system, performed a reciprocal transplant experiment, and measured the stable carbon isotope ratio of Cliona spp. with and without zooxanthellae to study the influence of environment on the interaction. We found strong evidence of a transfer of C from zooxanthellae to their sponge hosts but no evidence of a transfer of N from sponge to zooxanthellae. We also saw significant influences of the environment on the metabolism of the sponges. Finally, we observed significant differences in carbon metabolism of sponge species with and without symbionts. These data strongly support hypotheses of metabolic integration between zooxanthellae and their sponge host and extend our understanding of basic aspects of benthic-pelagic coupling in shallow-water marine environments.

Benthic foraminifera in the plankton following storms: what does this mean for (palaeo)-ecological interpretations?

Science.gov (United States)

Hart, Malcolm; Molina, Giulia; Smart, Christopher; Widdicombe, Claire

2017-04-01

The Western Channel Observatory was established by the Natural Environment Research Council (NERC), with Plymouth Marine Laboratory managing the two autonomous buoys that are located to the south of Plymouth in the English Channel (Stations L4 and E1): see Smyth et al. (2015). These two locations are now monitored continually and there is regular sampling of the water column and the sea floor at both locations. At Station L4, despite being in waters with a depth of 50 m, benthic foraminifera are regularly found in the surface water plankton samples. Some of these benthic foraminifera contain algal symbionts, indicating that they may be living at the time of capture. If benthic foraminifera can be entrained in the water column, while still living, then this provides a mechanism for 'migration' that is much more rapid and efficient than the rate at which protists could migrate within, or on, the sediment surface. Recolonization by foraminifera, following disturbance, could well be facilitated by this mechanism which has only rarely been reported in the literature (e.g., Murray, 1965). It is clearly limited to depths impacted by fair weather ( 30 m) or storm wave base (80 - 100 m). Data gathered during winter 2015-2016 certainly indicate that, following storm events, the larger the number of benthic foraminifera in the plankton tows and the greater their overall size. Some of the individuals being observed appear to contain sediment, indicating that they have been picked up from the sediment surface and, despite their greater weight, have still been transported into the plankton. Using data from the nearby sea area, off-shore and within Plymouth Sound, we are trying to ascertain if the recorded assemblage is from the L4 area, or whether they have been transported out from shallower-water environments, possibly assisted by increased run-off caused by heavy rainfall (associated with the storms). Clearly, re-distribution of foraminifera in the environment might make

The 'Natural Laboratory', a tool for deciphering growth, lifetime and population dynamics in larger benthic foraminifera

Science.gov (United States)

Hohenegger, Johann

2015-04-01

The shells of symbiont-bearing larger benthic Foraminifera (LBF) represent the response to physiological requirements in dependence of environmental conditions. All compartments of the shell such as chambers and chamberlets accommodate the growth of the cell protoplasm and are adaptations for housing photosymbiotic algae. Investigations on the biology of LBF were predominantly based on laboratory studies. The lifetime of LBF under natural conditions is still unclear. LBF, which can build >100 chambers during their lifetime, are thought to live at least one year under natural conditions. This is supported by studies on population dynamics of eulittoral foraminifera. In species characterized by a time-restricted single reproduction period the mean size of specimens increases from small to large during lifetime simultaneously reducing individual number. This becomes more complex when two or more reproduction times are present within a one-year cycle leading to a mixture of abundant small individuals with few large specimens during the year, while keeping mean size more or less constant. This mixture is typical for most sublittoral megalospheric (gamonts or schizonts) LBF. Nothing is known on the lifetime of agamonts, the diploid asexually reproducing generation. In all hyaline LBF it is thought to be significantly longer than 1 year based on the large size and considering the mean chamber building rate of the gamont/schizonts. Observations on LBF under natural conditions have not been performed yet in the deeper sublittoral. This reflects the difficulties due to intense hydrodynamics that hinder deploying technical equipment for studies in the natural environment. Therefore, studying growth, lifetime and reproduction of sublittoral LBF under natural conditions can be performed using the so-called 'natural laboratory' in comparison with laboratory investigations. The best sampling method in the upper sublittoral from 5 to 70 m depth is by SCUBA diving. Irregular

Automated species-level identification and segmentation of planktonic foraminifera using convolutional neural networks

Science.gov (United States)

Marchitto, T. M., Jr.; Mitra, R.; Zhong, B.; Ge, Q.; Kanakiya, B.; Lobaton, E.

2017-12-01

Identification and picking of foraminifera from sediment samples is often a laborious and repetitive task. Previous attempts to automate this process have met with limited success, but we show that recent advances in machine learning can be brought to bear on the problem. As a `proof of concept' we have developed a system that is capable of recognizing six species of extant planktonic foraminifera that are commonly used in paleoceanographic studies. Our pipeline begins with digital photographs taken under 16 different illuminations using an LED ring, which are then fused into a single 3D image. Labeled image sets were used to train various types of image classification algorithms, and performance on unlabeled image sets was measured in terms of precision (whether IDs are correct) and recall (what fraction of the target species are found). We find that Convolutional Neural Network (CNN) approaches achieve precision and recall values between 80 and 90%, which is similar precision and better recall than human expert performance using the same type of photographs. We have also trained a CNN to segment the 3D images into individual chambers and apertures, which can not only improve identification performance but also automate the measurement of foraminifera for morphometric studies. Given that there are only 35 species of extant planktonic foraminifera larger than 150 μm, we suggest that a fully automated characterization of this assemblage is attainable. This is the first step toward the realization of a foram picking robot.

Structure, diversity and environmental role of foraminiferal assemblages from reefal settings of Moorea (Society Islands, French Polynesia)

Science.gov (United States)

Fajemila, Olugbenga; Langer, Martin R.

2015-04-01

Reefal and shallow lagoonal environments around the island Moorea (Society Islands, French Polynesia) offer a spectacular variety of microhabitats providing a multitude niches and ideal settings for rich assemblages of tropical benthic foraminifera. The Society Islands are located near the hotspot of tropical marine diversity and represent a transitional location between the high diversity assemblages of the coral triangle and the low diversity biotas of the eastern Pacific. This area constitutes an important biogeographic link and stepping stone between the eastern and western biotas of the tropical Pacific Ocean. We have analyzed the structure, diversity and composition of benthic foraminiferal assemblages from around Moorea to document the composition, species richness and environmental role of larger and smaller benthic foraminifera from within the lagoonal system, the mangrove habitats and fore-reef sites. Foraminifera are prominent producers of calcium carbonate and contribute significantly to structures in reefal settings of the tropical Pacific. We evaluate the potential of larger symbiont-bearing foraminifera as environmental engineers and apply the FORAM-Index as proxy to assess the conditions around Moorea Island. We also evaluate the role of the Society Islands as stepping stone between biogeographic regions of the Pacific Ocean.

Facultative symbiont infections affect aphid reproduction.

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Jean-Christophe Simon

Full Text Available Some bacterial symbionts alter their hosts reproduction through various mechanisms that enhance their transmission in the host population. In addition to its obligatory symbiont Buchnera aphidicola, the pea aphid Acyrthosiphon pisum harbors several facultative symbionts influencing several aspects of host ecology. Aphids reproduce by cyclical parthenogenesis whereby clonal and sexual reproduction alternate within the annual life cycle. Many species, including the pea aphid, also show variation in their reproductive mode at the population level, with some lineages reproducing by cyclical parthenogenesis and others by permanent parthenogenesis. While the role of facultative symbionts has been well studied during the parthenogenetic phase of their aphid hosts, very little is known on their possible influence during the sexual phase. Here we investigated whether facultative symbionts modulate the capacity to produce sexual forms in various genetic backgrounds of the pea aphid with controlled symbiont composition and also in different aphid genotypes from natural populations with previously characterized infection status and reproductive mode. We found that most facultative symbionts exhibited detrimental effects on their hosts fitness under sex-inducing conditions in comparison with the reference lines. We also showed that the loss of sexual phase in permanently parthenogenetic lineages of A. pisum was not explained by facultative symbionts. Finally, we demonstrated that Spiroplasma infection annihilated the production of males in the host progeny by inducing a male-killing phenotype, an unexpected result for organisms such as aphids that reproduce primarily through clonal reproduction.

Facultative symbiont infections affect aphid reproduction.

Science.gov (United States)

Simon, Jean-Christophe; Boutin, Sébastien; Tsuchida, Tsutomu; Koga, Ryuichi; Le Gallic, Jean-François; Frantz, Adrien; Outreman, Yannick; Fukatsu, Takema

2011-01-01

Some bacterial symbionts alter their hosts reproduction through various mechanisms that enhance their transmission in the host population. In addition to its obligatory symbiont Buchnera aphidicola, the pea aphid Acyrthosiphon pisum harbors several facultative symbionts influencing several aspects of host ecology. Aphids reproduce by cyclical parthenogenesis whereby clonal and sexual reproduction alternate within the annual life cycle. Many species, including the pea aphid, also show variation in their reproductive mode at the population level, with some lineages reproducing by cyclical parthenogenesis and others by permanent parthenogenesis. While the role of facultative symbionts has been well studied during the parthenogenetic phase of their aphid hosts, very little is known on their possible influence during the sexual phase. Here we investigated whether facultative symbionts modulate the capacity to produce sexual forms in various genetic backgrounds of the pea aphid with controlled symbiont composition and also in different aphid genotypes from natural populations with previously characterized infection status and reproductive mode. We found that most facultative symbionts exhibited detrimental effects on their hosts fitness under sex-inducing conditions in comparison with the reference lines. We also showed that the loss of sexual phase in permanently parthenogenetic lineages of A. pisum was not explained by facultative symbionts. Finally, we demonstrated that Spiroplasma infection annihilated the production of males in the host progeny by inducing a male-killing phenotype, an unexpected result for organisms such as aphids that reproduce primarily through clonal reproduction.

Automatic Picking of Foraminifera: Design of the Foraminifera Image Recognition and Sorting Tool (FIRST) Prototype and Results of the Image Classification Scheme

Science.gov (United States)

de Garidel-Thoron, T.; Marchant, R.; Soto, E.; Gally, Y.; Beaufort, L.; Bolton, C. T.; Bouslama, M.; Licari, L.; Mazur, J. C.; Brutti, J. M.; Norsa, F.

2017-12-01

Foraminifera tests are the main proxy carriers for paleoceanographic reconstructions. Both geochemical and taxonomical studies require large numbers of tests to achieve statistical relevance. To date, the extraction of foraminifera from the sediment coarse fraction is still done by hand and thus time-consuming. Moreover, the recognition of morphotypes, ecologically relevant, requires some taxonomical skills not easily taught. The automatic recognition and extraction of foraminifera would largely help paleoceanographers to overcome these issues. Recent advances in automatic image classification using machine learning opens the way to automatic extraction of foraminifera. Here we detail progress on the design of an automatic picking machine as part of the FIRST project. The machine handles 30 pre-sieved samples (100-1000µm), separating them into individual particles (including foraminifera) and imaging each in pseudo-3D. The particles are classified and specimens of interest are sorted either for Individual Foraminifera Analyses (44 per slide) and/or for classical multiple analyses (8 morphological classes per slide, up to 1000 individuals per hole). The classification is based on machine learning using Convolutional Neural Networks (CNNs), similar to the approach used in the coccolithophorid imaging system SYRACO. To prove its feasibility, we built two training image datasets of modern planktonic foraminifera containing approximately 2000 and 5000 images each, corresponding to 15 & 25 morphological classes. Using a CNN with a residual topology (ResNet) we achieve over 95% correct classification for each dataset. We tested the network on 160,000 images from 45 depths of a sediment core from the Pacific ocean, for which we have human counts. The current algorithm is able to reproduce the downcore variability in both Globigerinoides ruber and the fragmentation index (r2 = 0.58 and 0.88 respectively). The FIRST prototype yields some promising results for high

Foraminifera from the deep lake terraces, Vestfold hills, Antarctica

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.; Williams, R.; Kerry, K.R.

regarding disparity in abundance (paucity or even absence) of foraminifera in samples from identical elevations in the two transects are proposed: differential wind erosion occurred and foraminifera were deposited elsewhere; the faunas are remnants of debris...

Horizontal Transmission of Intracellular Insect Symbionts via Plants

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Ewa Chrostek

2017-11-01

Full Text Available Experimental evidence is accumulating that endosymbionts of phytophagous insects may transmit horizontally via plants. Intracellular symbionts known for manipulating insect reproduction and altering fitness (Rickettsia, Cardinium, Wolbachia, and bacterial parasite of the leafhopper Euscelidius variegatus have been found to travel from infected insects into plants. Other insects, either of the same or different species can acquire the symbiont from the plant through feeding, and in some cases transfer it to their progeny. These reports prompt many questions regarding how intracellular insect symbionts are delivered to plants and how they affect them. Are symbionts passively transported along the insect-plant-insect path, or do they actively participate in the process? How widespread are these interactions? How does symbiont presence influence the plant? And what conditions are required for the new infection to establish in an insect? From an ecological, evolutionary, and applied perspective, this mode of horizontal transmission could have profound implications if occurring frequently enough or if new stable symbiont infections are established. Transmission of symbionts through plants likely represents an underappreciated means of infection, both in terms of symbiont epidemiology and the movement of symbionts to new host species.

2. Tertiary Foraminifera

NARCIS (Netherlands)

Umbgrove, J.H.F.

1931-01-01

In his review of the palaeozoology of Java, K. Martin could in 1919, record 49 foraminifera from tertiary strata of Java, on the strength of a critical study of the existant literature, and especially on the strength of his own studies and knowledge of the above mentioned fossils (Bibl. 49). In

Co-niche construction between hosts and symbionts

Indian Academy of Sciences (India)

Symbiosis is a process that can generate evolutionary novelties and can extend the phenotypic niche space of organisms. Symbionts can act together with their hosts to co-construct host organs, within which symbionts are housed. Once established within hosts, symbionts can also influence various aspects of host ...

Diverse strategies for vertical symbiont transmission among subsocial stinkbugs.

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Takahiro Hosokawa

Full Text Available Sociality may affect symbiosis and vice versa. Many plant-sucking stinkbugs harbor mutualistic bacterial symbionts in the midgut. In the superfamily Pentatomoidea, adult females excrete symbiont-containing materials from the anus, which their offspring ingest orally and establish vertical symbiont transmission. In many stinkbug families whose members are mostly non-social, females excrete symbiont-containing materials onto/beside eggs upon oviposition. However, exceptional cases have been reported from two subsocial species representing the closely related families Cydnidae and Parastrachiidae, wherein females remain nearby eggs for maternal care after oviposition, and provide their offspring with symbiont-containing secretions at later stages, either just before or after hatching. These observations suggested that sociality of the host stinkbugs may be correlated with their symbiont transmission strategies. However, we found that cydnid stinkbugs of the genus Adomerus, which are associated with gammaproteobacterial gut symbionts and exhibit elaborate maternal care over their offspring, smear symbiont-containing secretions onto eggs upon oviposition as many non-social stinkbugs do. Surface sterilization of the eggs resulted in aposymbiotic insects of slower growth, smaller size and abnormal body coloration, indicating vertical symbiont transmission via egg surface contamination and presumable beneficial nature of the symbiosis. The Adomerus symbionts exhibited AT-biased nucleotide compositions, accelerated molecular evolutionary rates and reduced genome size, while these degenerative genomic traits were less severe than those in the symbiont of a subsocial parastrachiid. These results suggest that not only sociality but also other ecological and evolutionary aspects of the host stinkbugs, including the host-symbiont co-evolutionary history, may have substantially affected their symbiont transmission strategies.

Vertical distribution of living mangrove foraminifera from KwaZulu ...

African Journals Online (AJOL)

Previous intertidal foraminiferal studies have predominantly focused on assemblages in surface sediments (0–1 cm), with the rationale that surface assemblages reflect the modern-day environment. Foraminifera live infaunally and therefore there is a need to document the infaunal vertical distribution of living foraminifera to ...

Quality or quantity: is nutrient transfer driven more by symbiont identity and productivity than by symbiont abundance?

Science.gov (United States)

Freeman, Christopher J; Thacker, Robert W; Baker, David M; Fogel, Marilyn L

2013-06-01

By forming symbiotic interactions with microbes, many animals and plants gain access to the products of novel metabolic pathways. We investigated the transfer of symbiont-derived carbon and nitrogen to the sponges Aplysina cauliformis, Aplysina fulva, Chondrilla caribensis, Neopetrosia subtriangularis and Xestospongia bocatorensis, all of which host abundant microbial populations, and Niphates erecta, which hosts a sparse symbiont community. We incubated sponges in light and dark bottles containing seawater spiked with (13)C- and (15)N-enriched inorganic compounds and then measured (13)C and (15)N enrichment in the microbial (nutrient assimilation) and sponge (nutrient transfer) fractions. Surprisingly, although most sponges hosting abundant microbial communities were more enriched in (13)C than N. erecta, only N. subtriangularis was more enriched in (15)N than N. erecta. Although photosymbiont abundance varied substantially across species, (13)C and (15)N enrichment was not significantly correlated with photosymbiont abundance. Enrichment was significantly correlated with the ratio of gross productivity to respiration (P:R), which varied across host species and symbiont phylotype. Because irradiance impacts P:R ratios, we also incubated A. cauliformis in (13)C-enriched seawater under different irradiances to determine whether symbiont carbon fixation and transfer are dependent on irradiance. Carbon fixation and transfer to the sponge host occurred in all treatments, but was greatest at higher irradiances and was significantly correlated with P:R ratios. Taken together, these results demonstrate that nutrient transfer from microbial symbionts to host sponges is influenced more by host-symbiont identities and P:R ratios than by symbiont abundance.

Comparative genomics of vesicomyid clam (Bivalvia: Mollusca chemosynthetic symbionts

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Girguis Peter R

2008-12-01

Full Text Available Abstract Background The Vesicomyidae (Bivalvia: Mollusca are a family of clams that form symbioses with chemosynthetic gamma-proteobacteria. They exist in environments such as hydrothermal vents and cold seeps and have a reduced gut and feeding groove, indicating a large dependence on their endosymbionts for nutrition. Recently, two vesicomyid symbiont genomes were sequenced, illuminating the possible nutritional contributions of the symbiont to the host and making genome-wide evolutionary analyses possible. Results To examine the genomic evolution of the vesicomyid symbionts, a comparative genomics framework, including the existing genomic data combined with heterologous microarray hybridization results, was used to analyze conserved gene content in four vesicomyid symbiont genomes. These four symbionts were chosen to include a broad phylogenetic sampling of the vesicomyid symbionts and represent distinct chemosynthetic environments: cold seeps and hydrothermal vents. Conclusion The results of this comparative genomics analysis emphasize the importance of the symbionts' chemoautotrophic metabolism within their hosts. The fact that these symbionts appear to be metabolically capable autotrophs underscores the extent to which the host depends on them for nutrition and reveals the key to invertebrate colonization of these challenging environments.

Oxygen respiration rates of benthic foraminifera as measured with oxygen microsensors

DEFF Research Database (Denmark)

Geslin, E.; Risgaard-Petersen, N.; Lombard, Fabien

2011-01-01

of the foraminiferal specimens. The results show a wide range of oxygen respiration rates for the different species (from 0.09 to 5.27 nl cell−1 h−1) and a clear correlation with foraminiferal biovolume showed by the power law relationship: R = 3.98 10−3 BioVol0.88 where the oxygen respiration rate (R) is expressed......Oxygen respiration rates of benthic foraminifera are still badly known, mainly because they are difficult to measure. Oxygen respiration rates of seventeen species of benthic foraminifera were measured using microelectrodes and calculated on the basis of the oxygen fluxes measured in the vicinity...... groups (nematodes, copepods, ostracods, ciliates and flagellates) suggests that benthic foraminifera have a lower oxygen respiration rates per unit biovolume. The total contribution of benthic foraminifera to the aerobic mineralisation of organic matter is estimated for the studied areas. The results...

Ecological partitioning and diversity in tropical planktonic foraminifera

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Seears Heidi A

2012-04-01

Full Text Available Abstract Background Ecological processes are increasingly being viewed as an important mode of diversification in the marine environment, where the high dispersal potential of pelagic organisms, and a lack of absolute barriers to gene flow may limit the occurrence of allopatric speciation through vicariance. Here we focus on the potential role of ecological partitioning in the diversification of a widely distributed group of marine protists, the planktonic foraminifera. Sampling was conducted in the tropical Arabian Sea, during the southwest (summer monsoon, when pronounced environmental conditions result in a strong disparity in temperature, salinity and productivity between distinct northern and southern water masses. Results We uncovered extensive genetic diversity within the Arabian Sea planktonic foraminifera, identifying 13 morphospecies, represented by 20 distinct SSU rRNA genetic types. Several morphospecies/genetic types displayed non-random biogeographical distributions, partitioning between the northern and southern water masses, giving a strong indication of independent ecological adaptations. Conclusions We propose sea-surface primary productivity as the main factor driving the geographical segregation of Arabian Sea planktonic foraminifera, during the SW monsoon, with variations in symbiotic associations possibly playing a role in the specific ecological adaptations observed. Our findings suggest that ecological partitioning could be contributing to the high levels of 'cryptic' genetic diversity observed within the planktonic foraminifera, and support the view that ecological processes may play a key role in the diversification of marine pelagic organisms.

Understanding regulation of the host-mediated gut symbiont population and the symbiont-mediated host immunity in the Riptortus-Burkholderia symbiosis system.

Science.gov (United States)

Kim, Jiyeun Kate; Lee, Jun Beom; Jang, Ho Am; Han, Yeon Soo; Fukatsu, Takema; Lee, Bok Luel

2016-11-01

Valuable insect models have tremendously contributed to our understanding of innate immunity and symbiosis. Bean bug, Riptortus pedestris, is a useful insect symbiosis model due to harboring cultivable monospecific gut symbiont, genus Burkholderia. Bean bug is a hemimetabolous insect whose immunity is not well-understood. However, we recently identified three major antimicrobial peptides of Riptortus and examined the relationship between gut symbiosis and host immunity. We found that the presence of Burkholderia gut symbiont positively affects Riptortus immunity. From studying host regulation mechanisms of symbiont population, we revealed that the symbiotic Burkholderia cells are much more susceptible to Riptortus immune responses than the cultured cells. We further elucidated that the immune-susceptibility of the Burkholderia gut symbionts is due to the drastic change of bacterial cell envelope. Finally, we show that the immune-susceptible Burkholderia symbionts are able to prosper in host owing to the suppression of immune responses of the symbiotic midgut. Copyright © 2016 Elsevier Ltd. All rights reserved.

Potential applications of insect symbionts in biotechnology.

Science.gov (United States)

Berasategui, Aileen; Shukla, Shantanu; Salem, Hassan; Kaltenpoth, Martin

2016-02-01

Symbiotic interactions between insects and microorganisms are widespread in nature and are often the source of ecological innovations. In addition to supplementing their host with essential nutrients, microbial symbionts can produce enzymes that help degrade their food source as well as small molecules that defend against pathogens, parasites, and predators. As such, the study of insect ecology and symbiosis represents an important source of chemical compounds and enzymes with potential biotechnological value. In addition, the knowledge on insect symbiosis can provide novel avenues for the control of agricultural pest insects and vectors of human diseases, through targeted manipulation of the symbionts or the host-symbiont associations. Here, we discuss different insect-microbe interactions that can be exploited for insect pest and human disease control, as well as in human medicine and industrial processes. Our aim is to raise awareness that insect symbionts can be interesting sources of biotechnological applications and that knowledge on insect ecology can guide targeted efforts to discover microorganisms of applied value.

Testing the Molecular Clock Using the Best Fossil Record: Case Studies from the Planktic Foraminifera

Science.gov (United States)

Steel, B. A.; Kucera, M.; Darling, K.

2004-12-01

derived AƒAøAøâ_sA¬A<Å"pinkAƒAøAøâ_sA¬Aøâ_zAø form may have been artificially truncated by diagenetic degradation of the meta-stable test pigmentation. The deep molecular splits for Gl. siphonifera (around 7 Ma for the two main morphologically distinguishable sub-types), whilst not so obviously at odds with the fossil record, still belie the very small amount of morphological evolution observed within the plexus. We have used morphometric methods on a large (over 2000 pooled specimens) dataset in an effort to independently test the molecular clock, using SEM-based measurement of pore metrics (for Gl. siphonifera) and a multivariate analysis of whole-test characteristics (for Gs. ruber). Comparison of results for the two species suggests interesting patterns; whilst the two cryptic sub-types of Gl. siphonifera seemingly can be traced through time and seem to respond to external oceanographic forcing, the sub-types of Gs. ruber appear to be truly cryptic, and cannot be distinguished in the fossil record beyond 0.7 Ma. This raises two important points; firstly, the molecular clock (at least for foraminifera) bears considerable scrutiny, appears to be relatively robust to substitution bias and is seemingly broadly in accordance with morphological data; and secondly, the relationship between form and function in planktic foraminifera appears to be ill-defined, raising important questions for functional morphology.

Planktonic foraminifera in the Arctic: potentials and issues regarding modern and quaternary populations

International Nuclear Information System (INIS)

Eynaud, Frederique

2011-01-01

Calcareous microfossils are widely used by paleoceanographers to investigate past sea-surface hydrology. Among these microfossils, planktonic foraminifera are probably the most extensively used tool (e.g. [1] for a review), as they are easy to extract from the sediment and can also be used for coupled geochemical (e.g; δ 18 O, δ 13 C, Mg/Ca) and paleo-ecological investigations. Planktonic foraminifera are marine protists, which build a calcareous shell made of several chambers which reflect in their chemistry the properties of the ambient water-masses. Planktonic foraminifera are known to thrive in various habitats, distributed not only along a latitudinal gradient, but also along different water-depth intervals within surface waters (0-1000 m). Regarding their biogeographical distribution, planktonic foraminifera assemblages therefore mirror different water-masses properties, such as temperature, salinity and nutrient content of the surface water in which they live. The investigation of the specific composition of a fossil assemblage (relative abundances) is therefore a way to empirically obtain (paleo)information on past variations of sea-surface hydrological parameters. This paper focuses on the planktonic foraminifera record from the Arctic domain. This polar region records peculiar sea-surface conditions, with the influence of nearly perennial sea-ice cover development. This has strong impact on living foraminifera populations and on the preservation of their shells in the underlying sediments.

Planktonic foraminifera in the Arctic: potentials and issues regarding modern and quaternary populations

Energy Technology Data Exchange (ETDEWEB)

Eynaud, Frederique, E-mail: f.eynaud@epoc.u-bordeaux1.fr [Universite Bordeaux I, Laboratoire EPOC (Environnements et Paleoenvironnements OCeaniques), UMR CNRS 5805, Avenue des facultes, 33405 Talence cedex - France (France)

2011-05-15

Calcareous microfossils are widely used by paleoceanographers to investigate past sea-surface hydrology. Among these microfossils, planktonic foraminifera are probably the most extensively used tool (e.g. [1] for a review), as they are easy to extract from the sediment and can also be used for coupled geochemical (e.g; {delta}{sup 18}O, {delta}{sup 13}C, Mg/Ca) and paleo-ecological investigations. Planktonic foraminifera are marine protists, which build a calcareous shell made of several chambers which reflect in their chemistry the properties of the ambient water-masses. Planktonic foraminifera are known to thrive in various habitats, distributed not only along a latitudinal gradient, but also along different water-depth intervals within surface waters (0-1000 m). Regarding their biogeographical distribution, planktonic foraminifera assemblages therefore mirror different water-masses properties, such as temperature, salinity and nutrient content of the surface water in which they live. The investigation of the specific composition of a fossil assemblage (relative abundances) is therefore a way to empirically obtain (paleo)information on past variations of sea-surface hydrological parameters. This paper focuses on the planktonic foraminifera record from the Arctic domain. This polar region records peculiar sea-surface conditions, with the influence of nearly perennial sea-ice cover development. This has strong impact on living foraminifera populations and on the preservation of their shells in the underlying sediments.

Tracking transmission of apicomplexan symbionts in diverse Caribbean corals.

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Nathan L Kirk

Full Text Available Symbionts in each generation are transmitted to new host individuals either vertically (parent to offspring, horizontally (from exogenous sources, or a combination of both. Scleractinian corals make an excellent study system for understanding patterns of symbiont transmission since they harbor diverse symbionts and possess distinct reproductive modes of either internal brooding or external broadcast spawning that generally correlate with vertical or horizontal transmission, respectively. Here, we focused on the under-recognized, but apparently widespread, coral-associated apicomplexans (Protista: Alveolata to determine if symbiont transmission depends on host reproductive mode. Specifically, a PCR-based assay was utilized towards identifying whether planula larvae and reproductive adults from brooding and broadcast spawning scleractinian coral species in Florida and Belize harbored apicomplexan DNA. Nearly all (85.5%; n = 85/89 examined planulae of five brooding species (Porites astreoides, Agaricia tenuifolia, Agaricia agaricites, Favia fragum, Mycetophyllia ferox and adults of P. astreoides were positive for apicomplexan DNA. In contrast, no (n = 0/10 apicomplexan DNA was detected from planulae of four broadcast spawning species (Acropora cervicornis, Acropora palmata, Pseudodiploria strigosa, and Orbicella faveolata and rarely in gametes (8.9%; n = 5/56 of these species sampled from the same geographical range as the brooding species. In contrast, tissue samples from nearly all (92.0%; n = 81/88 adults of the broadcast spawning species A. cervicornis, A. palmata and O. faveolata harbored apicomplexan DNA, including colonies whose gametes and planulae tested negative for these symbionts. Taken together, these data suggest apicomplexans are transmitted vertically in these brooding scleractinian coral species while the broadcast spawning scleractinian species examined here acquire these symbionts horizontally. Notably, these transmission

Tracking transmission of apicomplexan symbionts in diverse Caribbean corals.

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Kirk, Nathan L; Ritson-Williams, Raphael; Coffroth, Mary Alice; Miller, Margaret W; Fogarty, Nicole D; Santos, Scott R

2013-01-01

Symbionts in each generation are transmitted to new host individuals either vertically (parent to offspring), horizontally (from exogenous sources), or a combination of both. Scleractinian corals make an excellent study system for understanding patterns of symbiont transmission since they harbor diverse symbionts and possess distinct reproductive modes of either internal brooding or external broadcast spawning that generally correlate with vertical or horizontal transmission, respectively. Here, we focused on the under-recognized, but apparently widespread, coral-associated apicomplexans (Protista: Alveolata) to determine if symbiont transmission depends on host reproductive mode. Specifically, a PCR-based assay was utilized towards identifying whether planula larvae and reproductive adults from brooding and broadcast spawning scleractinian coral species in Florida and Belize harbored apicomplexan DNA. Nearly all (85.5%; n = 85/89) examined planulae of five brooding species (Porites astreoides, Agaricia tenuifolia, Agaricia agaricites, Favia fragum, Mycetophyllia ferox) and adults of P. astreoides were positive for apicomplexan DNA. In contrast, no (n = 0/10) apicomplexan DNA was detected from planulae of four broadcast spawning species (Acropora cervicornis, Acropora palmata, Pseudodiploria strigosa, and Orbicella faveolata) and rarely in gametes (8.9%; n = 5/56) of these species sampled from the same geographical range as the brooding species. In contrast, tissue samples from nearly all (92.0%; n = 81/88) adults of the broadcast spawning species A. cervicornis, A. palmata and O. faveolata harbored apicomplexan DNA, including colonies whose gametes and planulae tested negative for these symbionts. Taken together, these data suggest apicomplexans are transmitted vertically in these brooding scleractinian coral species while the broadcast spawning scleractinian species examined here acquire these symbionts horizontally. Notably, these transmission patterns are

TOF-SIMS characterization of planktonic foraminifera

International Nuclear Information System (INIS)

Vering, G.; Crone, C.; Bijma, J.; Arlinghaus, H.F.

2003-01-01

Oceanic sediment properties that are closely related to former environmental (e.g. climatic) parameters are called 'proxies'. Planktonic foraminifera are small protists which make up part of the plankton. Certain element concentrations, element ratios and isotopic ratios of their calcite shell found in the sediment can be used as proxies reflecting the state of the ocean during the life of the animal; they supply useful information for the reconstruction of environmental parameters. Time-of-flight secondary ion mass spectrometry (TOF-SIMS) was used to examine the inner and outer part of foraminiferal shells, as well as foraminiferal shells dissolved in HCl. High resolution elemental images and mass spectra were obtained from the foraminifera. The data show that TOF-SIMS is a useful technique for determining the elemental distribution and for measuring isotope ratios such as δ 11 B with high precision in a single foraminiferal shell

TOF-SIMS characterization of planktonic foraminifera

Energy Technology Data Exchange (ETDEWEB)

Vering, G.; Crone, C.; Bijma, J.; Arlinghaus, H.F

2003-01-15

Oceanic sediment properties that are closely related to former environmental (e.g. climatic) parameters are called 'proxies'. Planktonic foraminifera are small protists which make up part of the plankton. Certain element concentrations, element ratios and isotopic ratios of their calcite shell found in the sediment can be used as proxies reflecting the state of the ocean during the life of the animal; they supply useful information for the reconstruction of environmental parameters. Time-of-flight secondary ion mass spectrometry (TOF-SIMS) was used to examine the inner and outer part of foraminiferal shells, as well as foraminiferal shells dissolved in HCl. High resolution elemental images and mass spectra were obtained from the foraminifera. The data show that TOF-SIMS is a useful technique for determining the elemental distribution and for measuring isotope ratios such as {delta}{sup 11}B with high precision in a single foraminiferal shell.

Exploring symbiont management in lichens.

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Grube, Martin; Spribille, Toby

2012-07-01

Lichens are unique among fungal symbioses in that their mycelial structures are compact and exposed to the light as thallus structures. The myriad intersections of unique fungal species with photosynthetic partner organisms (green algae in 90% of lichens) produce a wide variety of diverse shapes and colours of the fully synthesized lichen thallus when growing in nature. This characteristic complex morphology is, however, not achieved in the fungal axenic state. Even under ideal environmental conditions, the lichen life cycle faces considerable odds: first, meiotic spores are only produced on well-established thalli and often only after achieving considerable age in a stable environment, and second, even then in vivo resynthesis requires the presence of compatible algal strains where fungal spores germinate. Many lichen species have evolved a way around the resynthesis bottleneck by producing asexual propagules for joint propagation of symbionts. These different dispersal strategies ostensibly shape the population genetic structure of lichen symbioses, but the relative contributions of vertical (joint) and horizontal (independent) symbiont transmission have long eluded lichen evolutionary biologists. In this issue of Molecular Ecology, Dal Grande et al. (2012) close in on this question with the lung lichen, Lobaria pulmonaria, a flagship species in the conservation of old growth forests. By capitalizing on available microsatellite markers for both fungal and algal symbionts, they show that while vertical transmission is the predominant mode of reproduction, horizontal transmission is demonstrable and actively shapes population genetic structure. The resulting mixed propagation system is a highly successful balance of safe recruitment of symbiotic clones and endless possibilities for fungal recombination and symbiont shuffling.

Intertidal foraminifera from Miramar-Caranzalem Shoreline, Goa

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.; Birajdar, S.M.; Nigam, R.

Quantitative analysis of foraminifera (entire and broken) revealed that Rotalina, composed of 29 species, constituted 95.18% while Miliolina, composed of 11 species, and Textulariina, with 5 species were poorly represented. Temperature, salinity...

Symbiont modulates expression of specific gene categories in Angomonas deanei

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Luciana Loureiro Penha

Full Text Available Trypanosomatids are parasites that cause disease in humans, animals, and plants. Most are non-pathogenic and some harbor a symbiotic bacterium. Endosymbiosis is part of the evolutionary process of vital cell functions such as respiration and photosynthesis. Angomonas deanei is an example of a symbiont-containing trypanosomatid. In this paper, we sought to investigate how symbionts influence host cells by characterising and comparing the transcriptomes of the symbiont-containing A. deanei (wild type and the symbiont-free aposymbiotic strains. The comparison revealed that the presence of the symbiont modulates several differentially expressed genes. Empirical analysis of differential gene expression showed that 216 of the 7625 modulated genes were significantly changed. Finally, gene set enrichment analysis revealed that the largest categories of genes that downregulated in the absence of the symbiont were those involved in oxidation-reduction process, ATP hydrolysis coupled proton transport and glycolysis. In contrast, among the upregulated gene categories were those involved in proteolysis, microtubule-based movement, and cellular metabolic process. Our results provide valuable information for dissecting the mechanism of endosymbiosis in A. deanei.

Incorporation of Mg and Sr in calcite of cultured benthic foraminifera: impact of calcium concentration and associated calcite saturation state

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M. Raitzsch

2010-03-01

Full Text Available We investigated the effect of the calcium concentration in seawater and thereby the calcite saturation state (Ω on the magnesium and strontium incorporation into benthic foraminiferal calcite under laboratory conditions. For this purpose individuals of the shallow-water species Heterostegina depressa (precipitating high-Mg calcite, symbiont-bearing and Ammonia tepida (low-Mg calcite, symbiont-barren were cultured in media under a range of [Ca²⁺], but similar Mg/Ca ratios. Trace element/Ca ratios of newly formed calcite were analysed with Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICP-MS and normalized to the seawater elemental composition using the equation D_TE=(TE/Ca_calcite/(TE/Ca_seawater. The culturing study shows that D_Mg of A. tepida significantly decreases with increasing Ω at a gradient of −4.3×10⁻⁵ per Ω unit. The D_Sr value of A. tepida does not change with Ω, suggesting that fossil Sr/Ca in this species may be a potential tool to reconstruct past variations in seawater Sr/Ca. Conversely, D_Mg of H. depressa shows only a minor decrease with increasing Ω, while D_Sr increases considerably with Ω at a gradient of 0.009 per Ω unit. The different responses to seawater chemistry of the two species may be explained by a difference in the calcification pathway that is, at the same time, responsible for the variation in the total Mg incorporation between the two species. Since the Mg/Ca ratio in H. depressa is 50–100 times higher than that of A. tepida, it is suggested that the latter exhibits a mechanism that decreases the Mg/Ca ratio of the calcification fluid, while the high-Mg calcite forming species may not have this physiological tool. If the dependency of Mg incorporation on seawater [Ca²⁺] is also valid for deep

Foraminifera and changing pattern of monsoon rainfall

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.

The palaeomonsoonal history can be reconstructed utilizing climatically sensitive properties of marine microorganisms; foraminifera. The results show a major boundary at 3500 years B.P. and periods of rather low precipitation approximately at 420...

Aphid facultative symbionts reduce survival of the predatory lady beetle Hippodamia convergens

Science.gov (United States)

2014-01-01

Background Non-essential facultative endosymbionts can provide their hosts with protection from parasites, pathogens, and predators. For example, two facultative bacterial symbionts of the pea aphid (Acyrthosiphon pisum), Serratia symbiotica and Hamiltonella defensa, protect their hosts from parasitism by two species of parasitoid wasp. Previous studies have not explored whether facultative symbionts also play a defensive role against predation in this system. We tested whether feeding on aphids harboring different facultative symbionts affected the fitness of an aphid predator, the lady beetle Hippodamia convergens. Results While these aphid faculative symbionts did not deter lady beetle feeding, they did decrease survival of lady beetle larvae. Lady beetle larvae fed a diet of aphids with facultative symbionts had significantly reduced survival from egg hatching to pupation and therefore had reduced survival to adult emergence. Additionally, lady beetle adults fed aphids with facultative symbionts were significantly heavier than those fed facultative symbiont-free aphids, though development time was not significantly different. Conclusions Aphids reproduce clonally and are often found in large groups. Thus, aphid symbionts, by reducing the fitness of the aphid predator H. convergens, may indirectly defend their hosts’ clonal descendants against predation. These findings highlight the often far-reaching effects that symbionts can have in ecological systems. PMID:24555501

Inheritance patterns of secondary symbionts during sexual reproduction of pea aphid biotypes.

Science.gov (United States)

Peccoud, Jean; Bonhomme, Joël; Mahéo, Frédérique; de la Huerta, Manon; Cosson, Olivier; Simon, Jean-Christophe

2014-06-01

Herbivorous insects frequently harbor bacterial symbionts that affect their ecology and evolution. Aphids host the obligatory endosymbiont Buchnera, which is required for reproduction, together with facultative symbionts whose frequencies vary across aphid populations. These maternally transmitted secondary symbionts have been particularly studied in the pea aphid, Acyrthosiphon pisum, which harbors at least 8 distinct bacterial species (not counting Buchnera) having environmentally dependent effects on host fitness. In particular, these symbiont species are associated with pea aphid populations feeding on specific plants. Although they are maternally inherited, these bacteria are occasionally transferred across insect lineages. One mechanism of such nonmaternal transfer is paternal transmission to the progeny during sexual reproduction. To date, transmission of secondary symbionts during sexual reproduction of aphids has been investigated in only a handful of aphid lineages and 3 symbiont species. To better characterize this process, we investigated inheritance patterns of 7 symbiont species during sexual reproduction of pea aphids through a crossing experiment involving 49 clones belonging to 9 host-specialized biotypes, and 117 crosses. Symbiont species in the progeny were detected with diagnostic qualitative PCR at the fundatrix stage hatching from eggs and in later parthenogenetic generations. We found no confirmed case of paternal transmission of symbionts to the progeny, and we observed that maternal transmission of a particular symbiont species (Serratia symbiotica) was quite inefficient. We discuss these observations in respect to the ecology of the pea aphid. © 2013 Institute of Zoology, Chinese Academy of Sciences.

Recent benthic foraminifera assemblages from mangrove swamp and channels of Abu Dhabi (UAE)

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Fiorini, Flavia; Lokier, Stephen W.; Odeh, Weaam A. S. Al; Paul, Andreas; Song, Jianfeng; Freeman, Mark; Michel, Françoise

2017-04-01

Zonation of Recent mangrove environments can be defined using benthic foraminifera, however, little is known about foraminifera from mangrove environments of the Persian/Arabian Gulf. The objective of this study is to produce a detailed micropaleontological and sedimentological analysis to identify foraminiferal associations from mangrove swamps and channels located on the eastern side of Abu Dhabi Island (UAE). Detailed sediment sampling collection in mangal environments of Eastern Abu Dhabi was carried out to assess the distribution of benthic foraminifera in different sedimentary facies in the mangal and in the surrounding natural environments of the upper and lower intertidal area (mud flats and channels). A 100 m transect across a natural channel in a mangal on the eastern side of Abu Dhabi Island was sampled in detail for sedimentological and foraminiferal analysis. Forty-seven samples were collected at 2 meter intervals along the transect in a number of different sedimentary facies including; fine sediment in areas exposed during low tide and close to mangrove trees (Avicennia marina), fine sediment rich in leaf material, coarse sediment in channels, and coarse sediments with a shell lag. At each sampling location environmental parameters were recorded, including water depth, salinity, temperature and pH. Samples collected for foraminiferal analysis were stained in rose Bengal in order to identify living specimens. Samples collected on the mud flat at the margin of the channel show a living foraminiferal assemblage characterised by abundant foraminifera belonging to the genera Ammonia, Elphidium, Cribroelphidium, Triloculina, Quinqueloculina, Sigmoilinita, Spiroloculina, Peneroplis and Spirolina. Samples collected in the lower (wet) intertidal area close to Avicennia marina roots, presented a low-diversity assemblage mostly comprising small-sized opportunistic foraminifera of the genera Ammonia and Cribroelphidium along with rare Triloculina and

Parasitic wasp responses to symbiont-based defense in aphids

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Oliver Kerry M

2012-02-01

Full Text Available Abstract Background Recent findings indicate that several insect lineages receive protection against particular natural enemies through infection with heritable symbionts, but little is yet known about whether enemies are able to discriminate and respond to symbiont-based defense. The pea aphid, Acyrthosiphon pisum, receives protection against the parasitic wasp, Aphidius ervi, when infected with the bacterial symbiont Hamiltonella defensa and its associated bacteriophage APSE (Acyrthosiphon pisum secondary endosymbiont. Internally developing parasitoid wasps, such as A. ervi, use maternal and embryonic factors to create an environment suitable for developing wasps. If more than one parasitoid egg is deposited into a single aphid host (superparasitism, then additional complements of these factors may contribute to the successful development of the single parasitoid that emerges. Results We performed experiments to determine if superparasitism is a tactic allowing wasps to overcome symbiont-mediated defense. We found that the deposition of two eggs into symbiont-protected aphids significantly increased rates of successful parasitism relative to singly parasitized aphids. We then conducted behavioral assays to determine whether A. ervi selectively superparasitizes H. defensa-infected aphids. In choice tests, we found that A. ervi tends to deposit a single egg in uninfected aphids, but two or more eggs in H. defensa-infected aphids, indicating that oviposition choices may be largely determined by infection status. Finally, we identified differences in the quantity of the trans-β-farnesene, the major component of aphid alarm pheromone, between H. defensa-infected and uninfected aphids, which may form the basis for discrimination. Conclusions Here we show that the parasitic wasp A. ervi discriminates among symbiont-infected and uninfected aphids, and changes its oviposition behavior in a way that increases the likelihood of overcoming symbiont

Invertebrate shells (mollusca, foraminifera) as pollution indicators, Red Sea Coast, Egypt

Science.gov (United States)

Youssef, Mohamed; Madkour, Hashem; Mansour, Abbas; Alharbi, Wedad; El-Taher, Atef

2017-09-01

To assess the degree of pollution and its impact on the environment along the Red Sea Coast, the most abundant nine species of recent benthic foraminifera and three species of molluscan shells have been selected for the analysis of Fe, Mn, Zn, Cu, Pb, Ni, Co, and Cd concentrations. The selected foraminiferal species are: Textularia agglutinans, Amphispsorus hemprichii, Sorites marginalis, Peneroplis planatus, Borelis schlumbergeri, Amphistegina lessonii, Ammonia beccarii, Operculina gaimairdi, and Operculinella cumingii. The selected molluscan shells are: Lambis truncata and Strombus tricornis (gastropods) and Tridacana gigas (bivalves). The inorganic material analysis of foraminifera and molluscs from the Quseir and Safaga harbors indicates that foraminifera tests include higher concentrations of heavy metals such as Fe and Mn than molluscan shells. These results are supported by the black tests of porcelaneous foraminifera and reflect iron selectivity. The Cd and Pb concentrations in molluscan shells are high in the El Esh Area because of oil pollution at this site. The Cu, Zn, and Ni concentrations in the studied invertebrates are high at Quseir Harbor and in the El Esh Area because of the strong influence of terrigenous materials that are rich in these metals. The heavy metal contamination is mostly attributed to anthropogenic sources.

Host-symbiont co-speciation and reductive genome evolution in gut symbiotic bacteria of acanthosomatid stinkbugs

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Kamagata Yoichi

2009-01-01

Full Text Available Abstract Background Host-symbiont co-speciation and reductive genome evolution have been commonly observed among obligate endocellular insect symbionts, while such examples have rarely been identified among extracellular ones, the only case reported being from gut symbiotic bacteria of stinkbugs of the family Plataspidae. Considering that gut symbiotic communities are vulnerable to invasion of foreign microbes, gut symbiotic associations have been thought to be evolutionarily not stable. Stinkbugs of the family Acanthosomatidae harbor a bacterial symbiont in the midgut crypts, the lumen of which is completely sealed off from the midgut main tract, thereby retaining the symbiont in the isolated cryptic cavities. We investigated histological, ecological, phylogenetic, and genomic aspects of the unique gut symbiosis of the acanthosomatid stinkbugs. Results Phylogenetic analyses showed that the acanthosomatid symbionts constitute a distinct clade in the γ-Proteobacteria, whose sister groups are the obligate endocellular symbionts of aphids Buchnera and the obligate gut symbionts of plataspid stinkbugs Ishikawaella. In addition to the midgut crypts, the symbionts were located in a pair of peculiar lubricating organs associated with the female ovipositor, by which the symbionts are vertically transmitted via egg surface contamination. The symbionts were detected not from ovaries but from deposited eggs, and surface sterilization of eggs resulted in symbiont-free hatchlings. The symbiont-free insects suffered retarded growth, high mortality, and abnormal morphology, suggesting important biological roles of the symbiont for the host insects. The symbiont phylogeny was generally concordant with the host phylogeny, indicating host-symbiont co-speciation over evolutionary time despite the extracellular association. Meanwhile, some local host-symbiont phylogenetic discrepancies were found, suggesting occasional horizontal symbiont transfers across the host

Symbiont dynamics during thermal acclimation using cnidarian-dinoflagellate model holobionts.

Science.gov (United States)

Núñez-Pons, Laura; Bertocci, Iacopo; Baghdasarian, Garen

2017-09-01

Warming oceans menace reef ecosystems by disrupting symbiosis between cnidarians and Symbiodinium zooxanthellae, thus triggering bleach episodes. Temperature fluctuations promote adjustments in physiological variables and symbiont composition, which can cause stress responses, but can also yield adaptation if fitter host-symbiont homeostasis are achieved. To understand such processes manipulative studies are required, but many reef-building cnidarians pose limitations to experimental prospects. We exposed Exaiptasia anemones to Gradual Thermal Stress (GTS) and Heat Shock (HS) exposures and monitored chlorophyll and symbiont dynamics to test the phenotypic plasticity of these photosynthetic holobionts. GTS enhanced chlorophyll concentrations and decreased Symbiodinium proliferation. A recovery period after GTS returned chlorophyll to lower concentrations and symbiont divisions to higher rates. HS triggered a stress response characterized by intense symbiont declines through degradation and expulsion, algal compensatory proliferation, and chlorophyll accumulation. Anemones pre-exposed to GTS displayed more acute signs of symbiont paucity after HS, demonstrating that recurrent stress does not always induce bleaching-resistance. Our study is the first documenting Symbiodinium C and D, along with the predominant Clade B1 in Exaiptasia anemones. C subclades found in outdoor specimens faded under laboratory exposures. Clade D emerged after HS treatments, and especially after GTS pre-exposure. This highlights the thermotolerance of D subclades found in E. pallida and shows that bleaching-recovery can involve shifts of background symbiont phylotypes. This study enlightens the capability of Exaiptasia anemones to acclimate to gradually increased temperatures, and explores into how thermal history influences in subsequent stress tolerance in symbiotic cnidarians. Copyright © 2017 Elsevier Ltd. All rights reserved.

Superparasitism Drives Heritable Symbiont Epidemiology and Host Sex Ratio in a Wasp.

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Steven R Parratt

2016-06-01

Full Text Available Heritable microbial symbionts have profound impacts upon the biology of their arthropod hosts. Whilst our current understanding of the dynamics of these symbionts is typically cast within a framework of vertical transmission only, horizontal transmission has been observed in a number of cases. For instance, several symbionts can transmit horizontally when their parasitoid hosts share oviposition patches with uninfected conspecifics, a phenomenon called superparasitism. Despite this, horizontal transmission, and the host contact structures that facilitates it, have not been considered in heritable symbiont epidemiology. Here, we tested for the importance of host contact, and resulting horizontal transmission, for the epidemiology of a male-killing heritable symbiont (Arsenophonus nasoniae in parasitoid wasp hosts. We observed that host contact through superparasitism is necessary for this symbiont's spread in populations of its primary host Nasonia vitripennis, such that when superparasitism rates are high, A. nasoniae almost reaches fixation, causes highly female biased population sex ratios and consequently causes local host extinction. We further tested if natural interspecific variation in superparasitism behaviours predicted symbiont dynamics among parasitoid species. We found that A. nasoniae was maintained in laboratory populations of a closely related set of Nasonia species, but declined in other, more distantly related pteromalid hosts. The natural proclivity of a species to superparasitise was the primary factor determining symbiont persistence. Our results thus indicate that host contact behaviour is a key factor for heritable microbe dynamics when horizontal transmission is possible, and that 'reproductive parasite' phenotypes, such as male-killing, may be of secondary importance in the dynamics of such symbiont infections.

MIDDLE TRIASSIC FORAMINIFERA FROM THE SECEDA CORE (DOLOMITES, NORTHERN ITALY

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FLORIAN MAURER

2002-11-01

Full Text Available The assemblage of foraminifera in turbidite beds in Middle Triassic basinal deposits straddling the Anisian/Ladinian boundary interval was studied in 224 thin sections. The fauna consists mainly of shallow-water inhabitants, associated with calcareous hyaline foraminifera (Lagenina of open marine environment. Due to a well established  biostratigraphy in the studied interval, the first and last appearance of some shallow water, benthic foraminifera can be assigned to the Mid Triassic ammonoid stratigraphy. The species Meandrospira dinarica Kochansky-Devidè & Pantic and Arenovidalina chialingchiagensis Ho are limited to the Reitzi ammonoid zone. The species Variostoma alta Kristan and Hoyenella gr. sinensis both do not superate the Curionii zone in age in the studied succession.  The biostratigraphic most important event occurs at the base of the Gredleri zone,  with the appearance of the family Involutinidae Bütschli, represented by the genera Lamelliconus and Aulotortus. The faunal composition is similar to those of neighbouring paleoprovinces, but generally a lower faunistical diversification compared to foraminiferal assemblages in the Anisian or Carnian is observed.   

Benthic foraminifera as proxy for oxygen-depleted conditions off the central west coast of India

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.; Mazumder, A.; Henriques, P.J.; Saraswat, R.

In order to study the response of benthic foraminifera, especially the rectilinear bi- and tri-serial benthic foraminifera (RBF) to oxygen-depleted conditions from the Arabian Sea off central west coast of India, 103 surface sediment samples...

Co-infection and localization of secondary symbionts in two whitefly species

Science.gov (United States)

2010-01-01

Background Whiteflies are cosmopolitan phloem-feeding pests that cause serious damage to many crops worldwide due to direct feeding and vectoring of many plant viruses. The sweetpotato whitefly Bemisia tabaci (Gennadius) and the greenhouse whitefly Trialeurodes vaporariorum (Westwood) are two of the most widespread and damaging whitefly species. To complete their unbalanced diet, whiteflies harbor the obligatory bacterium Portiera aleyrodidarum. B. tabaci further harbors a diverse array of secondary symbionts, including Hamiltonella, Arsenophonus, Cardinium, Wolbachia, Rickettsia and Fritschea. T. vaporariorum is only known to harbor P. aleyrodidarum and Arsenophonus. We conducted a study to survey the distribution of whitefly species in Croatia, their infection status by secondary symbionts, and the spatial distribution of these symbionts in the developmental stages of the two whitefly species. Results T. vaporariorum was found to be the predominant whitefly species across Croatia, while only the Q biotype of B. tabaci was found across the coastal part of the country. Arsenophonus and Hamiltonella were detected in collected T. vaporariorum populations, however, not all populations harbored both symbionts, and both symbionts showed 100% infection rate in some of the populations. Only the Q biotype of B. tabaci was found in the populations tested and they harbored Hamiltonella, Rickettsia, Wolbachia and Cardinium, while Arsenophonus and Fritschea were not detected in any B. tabaci populations. None of the detected symbionts appeared in all populations tested, and multiple infections were detected in some of the populations. All endosymbionts tested were localized inside the bacteriocyte in both species, but only Rickettsia and Cardinium in B. tabaci showed additional localization outside the bacteriocyte. Conclusions Our study revealed unique co-infection patterns by secondary symbionts in B. tabaci and T. vaporariorum. Co-sharing of the bacteriocyte by the primary

The evolution of test size in the Planktic Foraminifera

Science.gov (United States)

Fraass, A.; Huber, B. T.; Kelly, D. C.

2017-12-01

Planktic foraminifera are vital tools for understanding paleoceanography, paleoclimate, and evolution. A dataset of measurements from all planktic foraminiferal species is used here to investigate how their size changes through the late Jurassic to Recent. The mean test size of planktic foraminifera increases in the Cretaceous and the Cenozoic, with substantial drops at the Aptian/Albian boundary, in the Coniacian and Santonian, with the end-Cretaceous extinction, and across the Paleocene/Eocene boundary. The Oligocene contains only a small drop in mean size, which is surprising given the substantial extinction of planktic foraminifera at that boundary. There is a qualitative connection between mean and median size and paleoceanographic events, but several key issues remain before rigorous quantitative interrogation of the dataset can be undertaken. In general, species that originate early in a family's range are smaller than those evolving later, though this is a weak relationship. Individual families do not always conform to that finding, however, and have both increasing and decreasing family age-size relationships. The 'three faunas' concept for foraminiferal evolution fails with respect to mean and median size; each diversification has a unique rate of increase and character. Lastly, through comparison with the Schmidt et al. (2004) population-level test size dataset, the size response to climate in the low-latitudes is at the species-level. In the high-latitude regions, however, the response to climate is at the population level. Thus, methods for uncovering climate responses in planktic foraminifera must be specific to the region. Taxonomic or macroevolutionary responses dominate the tropics and global signals, while the polar regions appear to have a unique, and more microevolutionary response.Schmidt, D., Thierstein, H., Bollmann, J., & Schiebel, R. (2004). Abiotic Forcing of Plankton Evolution in the Cenozoic. Science, 303(5655), 207-210.

Standard methods for research on apis mellifera gut symbionts

Science.gov (United States)

Gut microbes can play an important role in digestion, disease resistance, and the general health of animals, but little is known about the biology of gut symbionts in Apis mellifera. This paper is part of a series on honey bee research methods, providing protocols for studying gut symbionts. We desc...

Co-niche construction between hosts and symbionts: ideas and evidence.

Science.gov (United States)

Borges, Renee M

2017-07-01

Symbiosis is a process that can generate evolutionary novelties and can extend the phenotypic niche space of organisms. Symbionts can act together with their hosts to co-construct host organs, within which symbionts are housed. Once established within hosts, symbionts can also influence various aspects of host phenotype, such as resource acquisition, protection from predation by acquisition of toxicity, as well as behaviour. Once symbiosis is established, its fidelity between generations must be ensured. Hosts evolve various mechanisms to screen unwanted symbionts and to facilitate faithful transmission of mutualistic partners between generations. Microbes are the most important symbionts that have influenced plant and animal phenotypes; multicellular organisms engage in developmental symbioses with microbes at many stages in ontogeny. The co-construction of niches may result in composite organisms that are physically nested within each other. While it has been advocated that these composite organisms need new evolutionary theories and perspectives to describe their properties and evolutionary trajectories, it appears that standard evolutionary theories are adequate to explore selection pressures on their composite or individual traits. Recent advances in our understanding of composite organisms open up many important questions regarding the stability and transmission of these units.

Accumulation of radionuclides by lichen symbionts

Energy Technology Data Exchange (ETDEWEB)

Nifontova, M G; Kulikov, N V [AN SSSR, Sverdlovsk. Inst. Ehkologii Rastenij i Zhivotnykh

1983-01-01

The aim of investigation is the quantitative estimation of ability and role of separate symbionts in the accumulation of radionuclides. As investigation volumes, durably cultivated green lichen alga Trebouxia erici and lichen fungi extracted from Cladonia rangiferina, Parmelia caperata and Acarospora fuscata are used. The accumulation of radioactive isotopes with fungi and seaweeds is estimated according to accumulation coefficients (AC) which are the ratio of radiation concentration in plants and agarized medium. Radionuclide content (/sup 90/Sr and /sup 137/Cs) is determined radiometrically. A special series of experiments is done to investigate radionuclide accumulation dependences with lichen seaweed and fungi on light conditions. It is shown that both symbionts of lichen-seaweed and fungus take part in the accumulation of radionuclide from outer medium (atmospheric fall-out and soil). However fungus component constituting the base of structural organization of thallus provides the greater part of radionuclides accumulated by the plant. Along with this the violation of viability of seaweed symbionts particularly in the case of light deficiency brings about the reduction of /sup 137/Cs sorption by seaweeds and tells on the total content of radiocesium in plant thallus.

High Symbiont Relatedness Stabilizes Mutualistic Cooperation in Fungus-Growing Termites

DEFF Research Database (Denmark)

Aanen, Duur K; de Fine Licht, Henrik H; Debets, Alfons J M

2009-01-01

It is unclear how mutualistic relationships can be stable when partners disperse freely and have the possibility of forming associations with many alternative genotypes. Theory predicts that high symbiont relatedness should resolve this problem, but the mechanisms to enforce this have rarely been...... of spore production in proportion to strain frequency. This positive reinforcement results in an exclusive lifetime association of each host colony with a single fungal symbiont and hinders the evolution of cheating. Our findings explain why vertical symbiont transmission in fungus-growing termites is rare...

REKONSTRUKSI BATIMETRI DAN IKLIM PURBA BERDASARKAN FORAMINIFERA DAERAH RALLA BARRU, SULAWESI SELATAN INDONESIA

Directory of Open Access Journals (Sweden)

Meutia Farida

2017-10-01

Full Text Available Daerah Ralla terletak di Kabupaten Barru Provinsi Sulawesi Selatan, tersusun atas batuan karbonat dan vulkanik. Salah satu komponen utama penyusun batuan ini adalah kandungan fosil foraminifera baik planktonik maupun bentonik yang jumlahnya melimpah. Penentuan umur dan lingkungan pengendapan purba (paleobathymetry, menggunakan foraminifera sebagai proksi iklim purba (paleoclimate yang baik. Pengambilan sampel dilakukan dengan metode Penampang Stratigrafi Terukur (Measuring Section pada singkapan napal dan batugamping dengan ketebalan mencapai 748,16 sentimeter yang terdiri dari 23 lapisan batuan. Hasil identifikasi dan determinasi fosil foraminifera menunjukkan bahwa pada sampel terdapat 46 spesies bentonik dan 28 spesies planktonik, dengan kisaran umur batuan adalah Eosen Bawah bagian atas (P9 – Eosen Tengah bagian tengah (P11, perubahan batimetri dengan siklus pengendapan inner neritic – upper bathyal - outer neritic. Jumlah spesies yang beragam dan sangat melimpah serta ukuran fosil yang besar menunjukkan nutrisi pada saat itu sangat berlimpah, dengan temperatur 0⁰– 27⁰C sebagai kondisi iklim hangat (warm water. Ralla area is located in Barru District, South Sulawesi Province which consisted of carbonate and volcanic rocks. One of the main components of these rocks is foraminifera fossils, include planktonic and bentonic which founded to be abundance. In determining the age and depositional environment (paleobathymetry, foraminifera fossils could be used as a good paleoclimate proxy. The research was conducted by Stratigraphy Measured (Measuring Section method in marl and limestone outcrop with a thickness of up to 748.16 centimeters which consists of 23 rock layers. Identification and determination of foraminifera fossils suggests that there are 46 bentonic and 28 planktonic species on samples, which are estimated the age of the rocks range from the end of lower Eocene (P9 till the middle of Middle Eocene (P11, bathymetry changes

Aphid secondary symbionts do not affect prey attractiveness to two species of predatory lady beetles.

Directory of Open Access Journals (Sweden)

Jennifer L Kovacs

Full Text Available Heritable symbionts have been found to mediate interactions between host species and their natural enemies in a variety of organisms. Aphids, their facultative symbionts, and their potential fitness effects have been particularly well-studied. For example, the aphid facultative symbiont Regiella can protect its host from infection from a fungal pathogen, and aphids with Hamiltonella are less likely to be parasitized by parasitic wasps. Recent work has also found there to be negative fitness effects for the larvae of two species of aphidophagous lady beetles that consumed aphids with facultative symbionts. In both species, larvae that consumed aphids with secondary symbionts were significantly less likely to survive to adulthood. In this study we tested whether adult Harmonia axyridis and Hippodamia convergens lady beetles avoided aphids with symbionts in a series of choice experiments. Adults of both lady beetle species were as likely to choose aphids with symbionts as those without, despite the potential negative fitness effects associated with consuming aphids with facultative symbionts. This may suggest that under natural conditions aphid secondary symbionts are not a significant source of selection for predatory lady beetles.

Morphological and cytological responses of Ammonia (foraminifera) to copper contamination: Implication for the use of foraminifera as bioindicators of pollution

Energy Technology Data Exchange (ETDEWEB)

Le Cadre, Valerie [Universite d' Angers, UPRES-EA 2644, Laboratoire de Geologie, 2 Bd Lavoisier 49045 Angers cedex (France) and LEBIM - Laboratoire d' Etude des Bio-Indicateurs Marins, 85350 Ile d' Yeu (France)]. E-mail: val.jeje@wanadoo.fr; Debenay, Jean-Pierre [Universite d' Angers, UPRES-EA 2644, Laboratoire de Geologie, 2 Bd Lavoisier 49045 Angers cedex (France); LEBIM - Laboratoire d' Etude des Bio-Indicateurs Marins, 85350 Ile d' Yeu (France)

2006-09-15

The effect of graded concentrations of copper was analyzed at morphological and cytological levels on two species of Ammonia (foraminifera) often found in polluted areas. The two species were sensitive to low concentration, but survived high concentration (threshold value < 10 {mu}g l{sup -1}, lethal value > 200 {mu}g l{sup -1}), which gives them a high potential value as bioindicators. Increasing concentrations lead to (1) increasing delay before production of new chambers, explaining dwarfism in polluted areas; (2) increasing delay before reproduction and decreasing number of juveniles, explaining low density; and (3) increasing proportion of deformed tests. Cytological modifications occurred only in deformed specimens (thickening of the organic lining, proliferation of fibrillar and of large lipidic vesicles, increased number of residual bodies). They may be responsible for anomalies in biomineralization processes. The detection of sulfur in deformed specimens suggests that foraminifers may have a detoxification mechanism with production of a metallothionein-like protein. - Results suggest a detoxification mechanism for copper in foraminifera.

Morphological and cytological responses of Ammonia (foraminifera) to copper contamination: Implication for the use of foraminifera as bioindicators of pollution

International Nuclear Information System (INIS)

Le Cadre, Valerie; Debenay, Jean-Pierre

2006-01-01

The effect of graded concentrations of copper was analyzed at morphological and cytological levels on two species of Ammonia (foraminifera) often found in polluted areas. The two species were sensitive to low concentration, but survived high concentration (threshold value -1 , lethal value > 200 μg l -1 ), which gives them a high potential value as bioindicators. Increasing concentrations lead to (1) increasing delay before production of new chambers, explaining dwarfism in polluted areas; (2) increasing delay before reproduction and decreasing number of juveniles, explaining low density; and (3) increasing proportion of deformed tests. Cytological modifications occurred only in deformed specimens (thickening of the organic lining, proliferation of fibrillar and of large lipidic vesicles, increased number of residual bodies). They may be responsible for anomalies in biomineralization processes. The detection of sulfur in deformed specimens suggests that foraminifers may have a detoxification mechanism with production of a metallothionein-like protein. - Results suggest a detoxification mechanism for copper in foraminifera

Carbon isotopic fractionation in live benthic foraminifera -comparison with inorganic precipitate studies

Energy Technology Data Exchange (ETDEWEB)

Grossmann, E L [University of Southern California, Los Angeles (USA). Dept. of Geological Sciences

1984-07-01

Carbon and oxygen isotopic analyses have been performed on live-stained aragonitic and calcitic benthic foraminifera and dissolved inorganic carbon from the Southern California Borderland to examine carbon isotopic fractionation in foraminifera. Temperature, salinity and pH data have also been collected to permit accurate determination of the delta/sup 13/C of bicarbonate ion and thus aragonite-HCO/sub 3//sup -/ and calcite-HCO/sub 3//sup -/ isotopic enrichment factors (epsilonsub(ar-b) and epsilonsub(cl-b), respectively). Only species which precipitate in /sup 18/O equilibrium have been considered. epsilonsub (ar-b) values based on Hoeglundina elegans range from 1.9 per mille at 2.7 deg C to 1.1 per mille at 9.5 deg C. The temperature dependence of epsilonsub(ar-b) is considerably greater than the equilibrium equation would predict and may be due to a vital effect. The calcitic foraminifera Cassidulina tortuosa, Cassidulina braziliensis, and Cassidulina limbata, Bank and Terrace dwellers, have s

Specific Midgut Region Controlling the Symbiont Population in an Insect-Microbe Gut Symbiotic Association

Science.gov (United States)

Kim, Jiyeun Kate; Kim, Na Hyang; Jang, Ho Am; Kikuchi, Yoshitomo; Kim, Chan-Hee

2013-01-01

Many insects possess symbiotic bacteria that affect the biology of the host. The level of the symbiont population in the host is a pivotal factor that modulates the biological outcome of the symbiotic association. Hence, the symbiont population should be maintained at a proper level by the host's control mechanisms. Several mechanisms for controlling intracellular symbionts of insects have been reported, while mechanisms for controlling extracellular gut symbionts of insects are poorly understood. The bean bug Riptortus pedestris harbors a betaproteobacterial extracellular symbiont of the genus Burkholderia in the midgut symbiotic organ designated the M4 region. We found that the M4B region, which is directly connected to the M4 region, also harbors Burkholderia symbiont cells, but the symbionts therein are mostly dead. A series of experiments demonstrated that the M4B region exhibits antimicrobial activity, and the antimicrobial activity is specifically potent against the Burkholderia symbiont but not the cultured Burkholderia and other bacteria. The antimicrobial activity of the M4B region was detected in symbiotic host insects, reaching its highest point at the fifth instar, but not in aposymbiotic host insects, which suggests the possibility of symbiont-mediated induction of the antimicrobial activity. This antimicrobial activity was not associated with upregulation of antimicrobial peptides of the host. Based on these results, we propose that the M4B region is a specialized gut region of R. pedestris that plays a critical role in controlling the population of the Burkholderia gut symbiont. The molecular basis of the antimicrobial activity is of great interest and deserves future study. PMID:24038695

Counts of Foraminifera from Selected North Atlantic Cores, LDEO

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Counts of primarily planktonic foraminifera from Dr. W.F. Ruddiman and staff at the Lamont-Doherty Earth Observatory of Columbia University are included in these...

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts.

Science.gov (United States)

Sanders, J G; Beinart, R A; Stewart, F J; Delong, E F; Girguis, P R

2013-08-01

Despite the ubiquity of chemoautotrophic symbioses at hydrothermal vents, our understanding of the influence of environmental chemistry on symbiont metabolism is limited. Transcriptomic analyses are useful for linking physiological poise to environmental conditions, but recovering samples from the deep sea is challenging, as the long recovery times can change expression profiles before preservation. Here, we present a novel, in situ RNA sampling and preservation device, which we used to compare the symbiont metatranscriptomes associated with Alviniconcha, a genus of vent snail, in which specific host-symbiont combinations are predictably distributed across a regional geochemical gradient. Metatranscriptomes of these symbionts reveal key differences in energy and nitrogen metabolism relating to both environmental chemistry (that is, the relative expression of genes) and symbiont phylogeny (that is, the specific pathways employed). Unexpectedly, dramatic differences in expression of transposases and flagellar genes suggest that different symbiont types may also have distinct life histories. These data further our understanding of these symbionts' metabolic capabilities and their expression in situ, and suggest an important role for symbionts in mediating their hosts' interaction with regional-scale differences in geochemistry.

A Novel, Extremely Elongated, and Endocellular Bacterial Symbiont Supports Cuticle Formation of a Grain Pest Beetle.

Science.gov (United States)

Hirota, Bin; Okude, Genta; Anbutsu, Hisashi; Futahashi, Ryo; Moriyama, Minoru; Meng, Xian-Ying; Nikoh, Naruo; Koga, Ryuichi; Fukatsu, Takema

2017-09-26

The saw-toothed grain beetle, Oryzaephilus surinamensis (Silvanidae), is a cosmopolitan stored-product pest. Early studies on O. surinamensis in the 1930s described the presence of peculiar bacteriomes harboring endosymbiotic bacteria in the abdomen. Since then, however, the microbiological nature of the symbiont has been elusive. Here we investigated the endosymbiotic system of O. surinamensis in detail. In the abdomen of adults, pupae, and larvae, four oval bacteriomes were consistently identified, whose cytoplasm was full of extremely elongated tubular bacterial cells several micrometers wide and several hundred micrometers long. Molecular phylogenetic analysis identified the symbiont as a member of the Bacteroidetes , in which the symbiont was the most closely related to the endosymbiont of a grain pest beetle, Rhyzopertha dominica (Bostrichidae). The symbiont was detected in developing embryos, corroborating vertical symbiont transmission through host generations. The symbiont gene showed AT-biased nucleotide composition and accelerated molecular evolution, plausibly reflecting degenerative evolution of the symbiont genome. When the symbiont infection was experimentally removed, the aposymbiotic insects grew and reproduced normally, but exhibited a slightly but significantly more reddish cuticle and lighter body mass. These results indicate that the symbiont of O. surinamensis is not essential for the host's growth and reproduction but contributes to the host's cuticle formation. Symbiont genome sequencing and detailed comparison of fitness parameters between symbiotic and aposymbiotic insects under various environmental conditions will provide further insights into the symbiont's biological roles for the stored-product pest. IMPORTANCE Some beetles notorious as stored-product pests possess well-developed symbiotic organs called bacteriomes for harboring specific symbiotic bacteria, although their biological roles have been poorly understood. Here we report

Caste-specific symbiont policing by workers of Acromyrmex fungus-growing ants

DEFF Research Database (Denmark)

Ivens, Aniek B.F.; Nash, David R.; Poulsen, Michael

2009-01-01

The interaction between leaf-cutting ants and their fungus garden mutualists is ideal for studying the evolutionary stability of interspecific cooperation. Although the mutualism has a long history of diffuse coevolution, there is ample potential for conflicts between the partners over the mixing...... and transmission of symbionts. Symbiont transmission is vertical by default, and both the ants and resident fungus actively protect the fungal monoculture growing in their nest against secondary introductions of genetically dissimilar symbionts from other colonies. An earlier study showed that mixtures of major...

Evolution: Welcome to Symbiont Prison

NARCIS (Netherlands)

Kiers, E.T.; West, S.A.

2016-01-01

Can egalitarian partnerships exist in nature? A new study demonstrates how protist hosts use and abuse their algal symbionts depending on their needs. While this relationship allows protists to survive in low nutrient conditions, it leaves little room for algal retaliation.

Insect symbionts in food webs

Czech Academy of Sciences Publication Activity Database

McLean, A. H. C.; Parker, B. J.; Hrček, Jan; Henry, L. M.; Godfray, H. C. J.

2016-01-01

Roč. 371, č. 1702 (2016), article number 20150325 ISSN 0962-8436 Institutional support: RVO:60077344 Keywords : food web * symbiont * symbiosis Subject RIV: EE - Microbiology, Virology Impact factor: 5.846, year: 2016 http://rstb.royalsocietypublishing.org/content/371/1702/20150325

Symbiont shuffling linked to differential photochemical dynamics of Symbiodinium in three Caribbean reef corals

Science.gov (United States)

Cunning, Ross; Silverstein, Rachel N.; Baker, Andrew C.

2018-03-01

Dynamic symbioses with functionally diverse dinoflagellate algae in the genus Symbiodinium may allow some reef corals to alter their phenotypes through `symbiont shuffling', or changes in symbiont community composition. In particular, corals may become more bleaching resistant by increasing the relative abundance of thermally tolerant Symbiodinium in clade D after bleaching. Despite the immediate relevance of this phenomenon to corals living in warming oceans—and to interventions aimed at boosting coral resilience—the mechanisms governing how, why, and when symbiont shuffling occurs are still poorly understood. Here, we performed controlled thermal bleaching and recovery experiments on three species of Caribbean corals hosting mixtures of D1a ( S. trenchii) and other symbionts in clades B or C. We show that the degree of symbiont shuffling is related to (1) the duration of stress exposure and (2) the difference in photochemical efficiency ( F v /F m) of co-occurring symbionts under stress (i.e., the `photochemical advantage' of one symbiont over the other). The advantage of D1a under stress was greatest in Montastraea cavernosa, intermediate in Siderastrea siderea, and lowest in Orbicella faveolata and correlated positively with the magnitude of shuffling toward D1a. In holobionts where D1a had less of an advantage over co-occurring symbionts (i.e., only slightly higher F v /F m under stress), a longer stress duration was required to elicit commensurate increases in D1a abundance. In fact, across these three coral species, 92.9% of variation in the degree of symbiont shuffling could be explained by the time-integrated photochemical advantage of D1a under heat stress. Although F v /F m is governed by numerous factors that this study is unable to resolve mechanistically, its strong empirical relationship with symbiont shuffling helps elucidate general features that govern this process in reef corals, which will help refine predictions of coral responses to

Distribution of living larger benthic foraminifera in littoral environments of the United Arab Emirates

Science.gov (United States)

Fiorini, Flavia; Lokier, Stephen W.

2015-04-01

The distribution of larger benthic foraminifera in Recent littoral environment of the United Arab Emirates (Abu Dhabi and Western regions) was investigated with the aim of understanding the response of those foraminifera to an increase in water salinity. For this purpose, 100 sediment samples from nearshore shelf, beach-front, channel, lagoon, and intertidal environment were collected. Sampling was undertaken at a water depth shallower than 15 m in water with a temperature of 22 to 35˚C, a salinity ranging from 40 to 60‰ and a pH of 8. Samples were stained with rose Bengal at the moment of sample collection in order to identify living specimens. The most abundant epiphytic larger benthic foraminifera in the studied area were Peneroplis pertusus and P. planatus with less common Spirolina areatina, S. aciculate and Sorites marginalis. The living specimens of the above mentioned species with normal test growing were particularly abundant in the nearshore shelf and lagoonal samples collected on seaweed. Dead specimens were concentrated in the coarser sediments of the beach-front, probably transported from nearby environments. Shallow coastal ponds are located in the upper intertidal zone and have a maximum salinity of 60‰ and contain abundant detached seagrass. Samples collected from these ponds possess a living foraminifera assemblage dominated by Peneroplis pertusus and P. planatus. High percentages (up to 50% of the stained assemblage) of Peneroplis presented abnormality in test growth, such as the presence of multiple apertures with reduced size, deformation in the general shape of the test, irregular suture lines and abnormal coiling. The high percentage of abnormal tests reflects natural environmental stress mainly caused by high and variable salinity. The unique presence of living epiphytic species, suggests that epiphytic foraminifera may be transported into the pond together with seagrass and continued to live in the pond. This hypothesis is supported by

Farming termites determine the genetic population structure of Termitomyces fungal symbionts

DEFF Research Database (Denmark)

Nobre, Tânia; Fernandes, Cecília; Boomsma, Jacobus J

2011-01-01

Symbiotic interactions between macrotermitine termites and their fungal symbionts have a moderate degree of specificity. Consistent with horizontal symbiont transmission, host switching has been frequent over evolutionary time so that single termite species can often be associated with several fu...

Foraminifera Models to Interrogate Ostensible Proxy-Model Discrepancies During Late Pliocene

Science.gov (United States)

Jacobs, P.; Dowsett, H. J.; de Mutsert, K.

2017-12-01

Planktic foraminifera faunal assemblages have been used in the reconstruction of past oceanic states (e.g. the Last Glacial Maximum, the mid-Piacenzian Warm Period). However these reconstruction efforts have typically relied on inverse modeling using transfer functions or the modern analog technique, which by design seek to translate foraminifera into one or two target oceanic variables, primarily sea surface temperature (SST). These reconstructed SST data have then been used to test the performance of climate models, and discrepancies have been attributed to shortcomings in climate model processes and/or boundary conditions. More recently forward proxy models or proxy system models have been used to leverage the multivariate nature of proxy relationships to their environment, and to "bring models into proxy space". Here we construct ecological models of key planktic foraminifera taxa, calibrated and validated with World Ocean Atlas (WO13) oceanographic data. Multiple modeling methods (e.g. multilayer perceptron neural networks, Mahalanobis distance, logistic regression, and maximum entropy) are investigated to ensure robust results. The resulting models are then driven by a Late Pliocene climate model simulation with biogeochemical as well as temperature variables. Similarities and differences with previous model-proxy comparisons (e.g. PlioMIP) are discussed.

Almost there: transmission routes of bacterial symbionts between trophic levels.

Directory of Open Access Journals (Sweden)

Elad Chiel

Full Text Available Many intracellular microbial symbionts of arthropods are strictly vertically transmitted and manipulate their host's reproduction in ways that enhance their own transmission. Rare horizontal transmission events are nonetheless necessary for symbiont spread to novel host lineages. Horizontal transmission has been mostly inferred from phylogenetic studies but the mechanisms of spread are still largely a mystery. Here, we investigated transmission of two distantly related bacterial symbionts--Rickettsia and Hamiltonella--from their host, the sweet potato whitefly, Bemisia tabaci, to three species of whitefly parasitoids: Eretmocerus emiratus, Eretmocerus eremicus and Encarsia pergandiella. We also examined the potential for vertical transmission of these whitefly symbionts between parasitoid generations. Using florescence in situ hybridization (FISH and transmission electron microscopy we found that Rickettsia invades Eretmocerus larvae during development in a Rickettsia-infected host, persists in adults and in females, reaches the ovaries. However, Rickettsia does not appear to penetrate the oocytes, but instead is localized in the follicular epithelial cells only. Consequently, Rickettsia is not vertically transmitted in Eretmocerus wasps, a result supported by diagnostic polymerase chain reaction (PCR. In contrast, Rickettsia proved to be merely transient in the digestive tract of Encarsia and was excreted with the meconia before wasp pupation. Adults of all three parasitoid species frequently acquired Rickettsia via contact with infected whiteflies, most likely by feeding on the host hemolymph (host feeding, but the rate of infection declined sharply within a few days of wasps being removed from infected whiteflies. In contrast with Rickettsia, Hamiltonella did not establish in any of the parasitoids tested, and none of the parasitoids acquired Hamiltonella by host feeding. This study demonstrates potential routes and barriers to horizontal

Geochemistry of trace elements and Sr- Nd isotopes of foraminifera shell from the Okinawa Trough

Institute of Scientific and Technical Information of China (English)

无

2001-01-01

Trace elemental associations and Sr - Nd isotopic compositions are of important to recognition of biogenic material from mixed marine sediments. The foraminifera shell from the Okinawa Trough strongly enrichesSr, P, Mn andBa, enriches Li, U, Th, Sc, Co, Cu, Pb, Zn, Cr, Rb, Y, Sb and light rare earth elements, slightly enriches V, Ga, Zr, Nb, Cd and middle rare earth elements,is short of Mo, In, Sn, Cs, Hf, Ta, W, Ti, Bi and heavy rare earth elements. The mechanism of elemental enrichment in forminifera is the concentrations of trace elements in sea water and selective absorption of trace elements during foraminifera living, as well as the geochemical affinity between major elements and trace elements. The REE (rare earth elements) partition pattern of foraminifera shell of the Okinawa Trough shows enrichment of middle rare earth elements with slightly negative Ce anomaly,which are different from those of foraminifera of the Pacific Ocean. The Sr, Nd isotopic ratios of the Okinawa Trough foraminifera are 0.709 769 and 0.512 162, respectively, which are different not only from those of oceanic water, but also from those of river water of China's Mainland, the former is slightly higher than those of oceanic water, but much lower than those of river water; the latter is slightly lower than those of oceanic water, but higher than those of river water, demonstrating that the Okinawa Trough sea water has been influenced by river water of China's Mainland.

Presumptive horizontal symbiont transmission in the fungus-growing termite Macrotermes natalensis

NARCIS (Netherlands)

Fine Licht, de H.H.; Boomsma, J.J.; Aanen, D.K.

2006-01-01

All colonies of the fungus-growing termite Macrotermes natalensis studied so far are associated with a single genetically variable lineage of Termitomyces symbionts. Such limited genetic variation of symbionts and the absence of sexual fruiting bodies (mushrooms) on M. natalensis mounds would be

Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice.

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Boyd, Bret M; Allen, Julie M; Nguyen, Nam-Phuong; Vachaspati, Pranjal; Quicksall, Zachary S; Warnow, Tandy; Mugisha, Lawrence; Johnson, Kevin P; Reed, David L

2017-07-01

Insects with restricted diets rely on symbiotic bacteria to provide essential metabolites missing in their diet. The blood-sucking lice are obligate, host-specific parasites of mammals and are themselves host to symbiotic bacteria. In human lice, these bacterial symbionts supply the lice with B-vitamins. Here, we sequenced the genomes of symbiotic and heritable bacterial of human, chimpanzee, gorilla, and monkey lice and used phylogenomics to investigate their evolutionary relationships. We find that these symbionts have a phylogenetic history reflecting the louse phylogeny, a finding contrary to previous reports of symbiont replacement. Examination of the highly reduced symbiont genomes (0.53-0.57 Mb) reveals much of the genomes are dedicated to vitamin synthesis. This is unchanged in the smallest symbiont genome and one that appears to have been reorganized. Specifically, symbionts from human lice, chimpanzee lice, and gorilla lice carry a small plasmid that encodes synthesis of vitamin B5, a vitamin critical to the bacteria-louse symbiosis. This plasmid is absent in an old world monkey louse symbiont, where this pathway is on its primary chromosome. This suggests the unique genomic configuration brought about by the plasmid is not essential for symbiosis, but once obtained, it has persisted for up to 25 My. We also find evidence that human, chimpanzee, and gorilla louse endosymbionts have lost a pathway for synthesis of vitamin B1, whereas the monkey louse symbiont has retained this pathway. It is unclear whether these changes are adaptive, but they may point to evolutionary responses of louse symbionts to shifts in primate biology. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Diversity and Phylogenetic Analyses of Bacterial Symbionts in Three Whitefly Species from Southeast Europe

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Skaljac, Marisa; Zanic, Katja; Puizina, Jasna; Lepen Pleic, Ivana; Ghanim, Murad

2017-01-01

Bemisia tabaci (Gennadius), Trialeurodes vaporariorum (Westwood), and Siphoninus phillyreae (Haliday) are whitefly species that harm agricultural crops in many regions of the world. These insects live in close association with bacterial symbionts that affect host fitness and adaptation to the environment. In the current study, we surveyed the infection of whitefly populations in Southeast Europe by various bacterial symbionts and performed phylogenetic analyses on the different symbionts detected. Arsenophonus and Hamiltonella were the most prevalent symbionts in all three whitefly species. Rickettsia was found to infect mainly B. tabaci, while Wolbachia mainly infected both B. tabaci and S. phillyreae. Furthermore, Cardinium was rarely found in the investigated whitefly populations, while Fritschea was never found in any of the whitefly species tested. Phylogenetic analyses revealed a diversity of several symbionts (e.g., Hamiltonella, Arsenophonus, Rickettsia), which appeared in several clades. Reproductively isolated B. tabaci and T. vaporariorum shared the same (or highly similar) Hamiltonella and Arsenophonus, while these symbionts were distinctive in S. phillyreae. Interestingly, Arsenophonus from S. phillyreae did not cluster with any of the reported sequences, which could indicate the presence of Arsenophonus, not previously associated with whiteflies. In this study, symbionts (Wolbachia, Rickettsia, and Cardinium) known to infect a wide range of insects each clustered in the same clades independently of the whitefly species. These results indicate horizontal transmission of bacterial symbionts between reproductively isolated whitefly species, a mechanism that can establish new infections that did not previously exist in whiteflies. PMID:29053633

Diversity and Phylogenetic Analyses of Bacterial Symbionts in Three Whitefly Species from Southeast Europe

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Marisa Skaljac

2017-10-01

Full Text Available Bemisia tabaci (Gennadius, Trialeurodes vaporariorum (Westwood, and Siphoninus phillyreae (Haliday are whitefly species that harm agricultural crops in many regions of the world. These insects live in close association with bacterial symbionts that affect host fitness and adaptation to the environment. In the current study, we surveyed the infection of whitefly populations in Southeast Europe by various bacterial symbionts and performed phylogenetic analyses on the different symbionts detected. Arsenophonus and Hamiltonella were the most prevalent symbionts in all three whitefly species. Rickettsia was found to infect mainly B. tabaci, while Wolbachia mainly infected both B. tabaci and S. phillyreae. Furthermore, Cardinium was rarely found in the investigated whitefly populations, while Fritschea was never found in any of the whitefly species tested. Phylogenetic analyses revealed a diversity of several symbionts (e.g., Hamiltonella, Arsenophonus, Rickettsia, which appeared in several clades. Reproductively isolated B. tabaci and T. vaporariorum shared the same (or highly similar Hamiltonella and Arsenophonus, while these symbionts were distinctive in S. phillyreae. Interestingly, Arsenophonus from S. phillyreae did not cluster with any of the reported sequences, which could indicate the presence of Arsenophonus, not previously associated with whiteflies. In this study, symbionts (Wolbachia, Rickettsia, and Cardinium known to infect a wide range of insects each clustered in the same clades independently of the whitefly species. These results indicate horizontal transmission of bacterial symbionts between reproductively isolated whitefly species, a mechanism that can establish new infections that did not previously exist in whiteflies.

Effect of ocean acidification on the benthic foraminifera

NARCIS (Netherlands)

Keul, N.; Langer, G.; de Nooijer, L.J.; Bijma, J.

2013-01-01

About 30% of the anthropogenically released CO2 is taken up by the oceans; such uptake causes surface ocean pH to decrease and is commonly referred to as ocean acidification (OA). Foraminifera are one of the most abundant groups of marine calcifiers, estimated to precipitate ca. 50 % of biogenic

Interspecific competition between entomopathogenic nematodes (Steinernema is modified by their bacterial symbionts (Xenorhabdus

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Pages Sylvie

2006-09-01

Full Text Available Abstract Background Symbioses between invertebrates and prokaryotes are biological systems of particular interest in order to study the evolution of mutualism. The symbioses between the entomopathogenic nematodes Steinernema and their bacterial symbiont Xenorhabdus are very tractable model systems. Previous studies demonstrated (i a highly specialized relationship between each strain of nematodes and its naturally associated bacterial strain and (ii that mutualism plays a role in several important life history traits of each partner such as access to insect host resources, dispersal and protection against various biotic and abiotic factors. The goal of the present study was to address the question of the impact of Xenorhabdus symbionts on the progression and outcome of interspecific competition between individuals belonging to different Steinernema species. For this, we monitored experimental interspecific competition between (i two nematode species: S. carpocapsae and S. scapterisci and (ii their respective symbionts: X. nematophila and X. innexi within an experimental insect-host (Galleria mellonella. Three conditions of competition between nematodes were tested: (i infection of insects with aposymbiotic IJs (i.e. without symbiont of both species (ii infection of insects with aposymbiotic IJs of both species in presence of variable proportion of their two Xenorhabdus symbionts and (iii infection of insects with symbiotic IJs (i.e. naturally associated with their symbionts of both species. Results We found that both the progression and the outcome of interspecific competition between entomopathogenic nematodes were influenced by their bacterial symbionts. Thus, the results obtained with aposymbiotic nematodes were totally opposite to those obtained with symbiotic nematodes. Moreover, the experimental introduction of different ratios of Xenorhabdus symbionts in the insect-host during competition between Steinernema modified the proportion of

Surfing the vegetal pole in a small population: extracellular vertical transmission of an 'intracellular' deep-sea clam symbiont.

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Ikuta, Tetsuro; Igawa, Kanae; Tame, Akihiro; Kuroiwa, Tsuneyoshi; Kuroiwa, Haruko; Aoki, Yui; Takaki, Yoshihiro; Nagai, Yukiko; Ozawa, Genki; Yamamoto, Masahiro; Deguchi, Ryusaku; Fujikura, Katsunori; Maruyama, Tadashi; Yoshida, Takao

2016-05-01

Symbiont transmission is a key event for understanding the processes underlying symbiotic associations and their evolution. However, our understanding of the mechanisms of symbiont transmission remains still fragmentary. The deep-sea clam Calyptogena okutanii harbours obligate sulfur-oxidizing intracellular symbiotic bacteria in the gill epithelial cells. In this study, we determined the localization of their symbiont associating with the spawned eggs, and the population size of the symbiont transmitted via the eggs. We show that the symbionts are located on the outer surface of the egg plasma membrane at the vegetal pole, and that each egg carries approximately 400 symbiont cells, each of which contains close to 10 genomic copies. The very small population size of the symbiont transmitted via the eggs might narrow the bottleneck and increase genetic drift, while polyploidy and its transient extracellular lifestyle might slow the rate of genome reduction. Additionally, the extracellular localization of the symbiont on the egg surface may increase the chance of symbiont exchange. This new type of extracellular transovarial transmission provides insights into complex interactions between the host and symbiont, development of both host and symbiont, as well as the population dynamics underlying genetic drift and genome evolution in microorganisms.

Identification of Spiroplasma insolitum symbionts in Anopheles gambiae [version 1; referees: 2 approved, 1 not approved

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Sharon T. Chepkemoi

2017-09-01

Full Text Available Background: Insect symbionts have the potential to block the transmission of vector-borne diseases by their hosts. The advancement of a symbiont-based transmission blocking strategy for malaria requires the identification and study of Anopheles symbionts. Methods: High throughput 16S amplicon sequencing was used to profile the bacteria associated with Anopheles gambiae sensu lato and identify potential symbionts. The polymerase chain reaction (PCR with specific primers were subsequently used to monitor symbiont prevalence in field populations, as well as symbiont transmission patterns. Results: We report the discovery of the bacterial symbiont, Spiroplasma, in Anopheles gambiae in Kenya. We determine that geographically dispersed Anopheles gambiae populations in Kenya are infected with Spiroplasma at low prevalence levels. Molecular phylogenetics indicates that this Anopheles gambiae associated Spiroplasma is a member of the insolitum clade. We demonstrate that this symbiont is stably maternally transmitted across at least two generations and does not significantly affect the fecundity or egg to adult survival of its host. Conclusions: In diverse insect species, Spiroplasma has been found to render their host resistant to infection by pathogens. The identification of a maternally transmitted strain of Spiroplasma in Anopheles gambiae may therefore open new lines of investigation for the development of symbiont-based strategies for blocking malaria transmission.

Presence of Foraminifera of Superfamily Komokioidea (Order Astrorhizida) in Colombian deep Caribbean waters.

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Tavera-Martínez, Laura; Marchant, Margarita

2017-10-20

Research regarding deep-sea benthic foraminifera in the Colombian Caribbean requires further development given the complete lack of information related to the different groups that constitute associations and the ecological functions they fulfill. For this purpose, a taxonomic description of Superfamily Komokioidea was composed from macrofauna samples from between 1,215 m and 3,179 m depth, obtained during the research cruise ANH-COL 4 and COL 5 carried out in 2014. Results showed foraminifera belonging to the three families: Komokiidae, Baculellidae, and Normaninidae, inclu-ding five genera (Lana, Komokia, Ipoa, Normaninam, and Catena) and five species (Lana neglecta, Komokia multiramosa, Normanina conferta, Ipoa fragila, and Catena piriformis). This study presents knowledge regarding deep-sea Colombian Caribbean benthic foraminifera, which to date have not been recorded from this region. Their depth distribution when compared with other studies from the Atlantic and Pacific, allows the expansion of taxonomic inventories and the characterization of biodiversity within poorly explored regions.

Why Do Corals Bleach? Conflict and Conflict Mediation in a Host/Symbiont Community.

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Blackstone, Neil W; Golladay, Jeff M

2018-06-26

Coral bleaching has attracted considerable study, yet one central question remains unanswered: given that corals and their Symbiodinium symbionts have co-evolved for millions of years, why does this clearly maladaptive process occur? Bleaching may result from evolutionary conflict between the host corals and their symbionts. Selection at the level of the individual symbiont favors using the products of photosynthesis for selfish replication, while selection at the higher level favors using these products for growth of the entire host/symbiont community. To hold the selfish lower-level units in check, mechanisms of conflict mediation must evolve. Fundamental features of photosynthesis have been co-opted into conflict mediation so that symbionts that fail to export these products produce high levels of reactive oxygen species and undergo programmed cell death. These mechanisms function very well under most environmental conditions, but under conditions particularly detrimental to photosynthesis, it is these mechanisms of conflict mediation that trigger bleaching. © 2018 WILEY Periodicals, Inc.

Patterns of interaction specificity of fungus-growing termites and Termitomyces symbionts in South Africa

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de Beer Z Wilhelm

2007-07-01

Full Text Available Abstract Background Termites of the subfamily Macrotermitinae live in a mutualistic symbiosis with basidiomycete fungi of the genus Termitomyces. Here, we explored interaction specificity in fungus-growing termites using samples from 101 colonies in South-Africa and Senegal, belonging to eight species divided over three genera. Knowledge of interaction specificity is important to test the hypothesis that inhabitants (symbionts are taxonomically less diverse than 'exhabitants' (hosts and to test the hypothesis that transmission mode is an important determinant for interaction specificity. Results Analysis of Molecular Variance among symbiont ITS sequences across termite hosts at three hierarchical levels showed that 47 % of the variation occurred between genera, 18 % between species, and the remaining 35 % between colonies within species. Different patterns of specificity were evident. High mutual specificity was found for the single Macrotermes species studied, as M. natalensis was associated with a single unique fungal haplotype. The three species of the genus Odontotermes showed low symbiont specificity: they were all associated with a genetically diverse set of fungal symbionts, but their fungal symbionts showed some host specificity, as none of the fungal haplotypes were shared between the studied Odontotermes species. Finally, bilaterally low specificity was found for the four tentatively recognized species of the genus Microtermes, which shared and apparently freely exchanged a common pool of divergent fungal symbionts. Conclusion Interaction specificity was high at the genus level and generally much lower at the species level. A comparison of the observed diversity among fungal symbionts with the diversity among termite hosts, indicated that the fungal symbiont does not follow the general pattern of an endosymbiont, as we found either similar diversity at both sides or higher diversity in the symbiont. Our results further challenge the

The herbaceous landlord: integrating the effects of symbiont consortia within a single host

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Roo Vandegrift

2015-11-01

Full Text Available Plants are typically infected by a consortium of internal fungal associates, including endophytes in their leaves, as well as arbuscular mycorrhizal fungi (AMF and dark septate endophytes (DSE in their roots. It is logical that these organisms will interact with each other and the abiotic environment in addition to their host, but there has been little work to date examining the interactions of multiple symbionts within single plant hosts, or how the relationships among symbionts and their host change across environmental conditions. We examined the grass Agrostis capillaris in the context of a climate manipulation experiment in prairies in the Pacific Northwest, USA. Each plant was tested for presence of foliar endophytes in the genus Epichloë, and we measured percent root length colonized (PRLC by AMF and DSE. We hypothesized that the symbionts in our system would be in competition for host resources, that the outcome of that competition could be driven by the benefit to the host, and that the host plants would be able to allocate carbon to the symbionts in such a way as to maximize fitness benefit within a particular environmental context. We found a correlation between DSE and AMF PRLC across climatic conditions; we also found a fitness cost to increasing DSE colonization, which was negated by presence of Epichloë endophytes. These results suggest that selective pressure on the host is likely to favor host/symbiont relationships that structure the community of symbionts in the most beneficial way possible for the host, not necessarily favoring the individual symbiont that is most beneficial to the host in isolation. These results highlight the need for a more integrative, systems approach to the study of host/symbiont consortia.

Pigments Characterization and Molecular Identification of Bacterial Symbionts of Brown Algae Padinasp. Collected from Karimunjawa Island

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Damar Bayu Murti

2016-06-01

Full Text Available The search for carotenoids in nature has been extensively studied because of their applications in foods. One treasure of the biopigment source is symbiotic-microorganisms with marine biota. The advantages of symbiont bacteria are easy to culture and sensitize pigments. The use of symbiont bacteria helps to conserve fish, coral reefs, seagrass, and seaweed. Therefore, the bacteria keeps their existence in their ecosystems. In this study, bacterial symbionts were successfully isolated from brown algae Padina sp. The bacterial symbionts had yellow pigment associated with carotenoids. The pigments were characterized using High Performance Liquid Chromatography (HPLC with a Photo Diode Array (PDA detector. The carotenoid pigments in the bacterial symbionts were identified as dinoxanthin, lutein and neoxanthin. Molecular identification by using a 16S rRNA gene sequence method, reveals that the bacterial symbionts were closely related to Bacillus marisflavi with a homology of 99%. Keywords :carotenoid pigments, brown algae, Padina, bacterial symbionts, 16S rRNA

Effect of varying frontal systems on stable oxygen and carbon isotopic compositions of modern planktic foraminifera of Southern Ocean

Digital Repository Service at National Institute of Oceanography (India)

Tiwari, M.; Mohan, R.; Meloth, T.; Naik, S.S.; Sudhakar, M.

, sediment cores and other physi- cal oceanographic parameters were collected. Here, we present the isotopic results obtained from planktic foraminifera from the plankton net samples and sur- face sediments. We find that, in this region too, plank- tic... characteristics in the Indian sector of the Southern Ocean. The δ 18 O value of planktic foraminifera is mainly governed by SST fluctuations: the samples be- come isotopically heavier polewards. Further, the plank- tic foraminifera appear to secrete...

Foraminifera, Thecamoebians and Palynomorphs as Hydrodynamic Indicators in Araguari Estuary, Amazonian Coast, Amapá State – Brazil

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Odete Fátima Machado

2010-01-01

Full Text Available The Araguari estuarine dynamics is singular among traditional models of estuaries under tidal regime due to influence of macrotidal and tidal bore. In order to establish estuarine zones in Araguari according foraminifera, thecamoebians, paliynomorphs and physical-chemistry parameters, sixteen sample stations were established along the estuary. Turbidity and temperature were the environmental parameters which allowed determination of the estuarine gradient. Eighteen species of foraminifera, ten of thecamoebians and fourteen of particulate organic matter types were identified. Cluster analysis in R-mode showed three microorganism assemblages and four palynomorph ones. The CCA analyze shows turbidity and total organic matter with the most influence over foraminiferal and thecamoebians distribution at Araguari. Clustering analysis in Q-mode using all data formed four groups suggesting three estuarine zones in Araguari: Zone I composed of thecamoebian species and continental palynomorphs; Zone II - composed by mangrove foraminifera, thecamoebians and all palynomorph assemblages; and Zone III – composed by mangrove and estuarine foraminifera and all palynomorph assemblages.

A Novel, Extremely Elongated, and Endocellular Bacterial Symbiont Supports Cuticle Formation of a Grain Pest Beetle

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Bin Hirota

2017-09-01

Full Text Available The saw-toothed grain beetle, Oryzaephilus surinamensis (Silvanidae, is a cosmopolitan stored-product pest. Early studies on O. surinamensis in the 1930s described the presence of peculiar bacteriomes harboring endosymbiotic bacteria in the abdomen. Since then, however, the microbiological nature of the symbiont has been elusive. Here we investigated the endosymbiotic system of O. surinamensis in detail. In the abdomen of adults, pupae, and larvae, four oval bacteriomes were consistently identified, whose cytoplasm was full of extremely elongated tubular bacterial cells several micrometers wide and several hundred micrometers long. Molecular phylogenetic analysis identified the symbiont as a member of the Bacteroidetes, in which the symbiont was the most closely related to the endosymbiont of a grain pest beetle, Rhyzopertha dominica (Bostrichidae. The symbiont was detected in developing embryos, corroborating vertical symbiont transmission through host generations. The symbiont gene showed AT-biased nucleotide composition and accelerated molecular evolution, plausibly reflecting degenerative evolution of the symbiont genome. When the symbiont infection was experimentally removed, the aposymbiotic insects grew and reproduced normally, but exhibited a slightly but significantly more reddish cuticle and lighter body mass. These results indicate that the symbiont of O. surinamensis is not essential for the host’s growth and reproduction but contributes to the host’s cuticle formation. Symbiont genome sequencing and detailed comparison of fitness parameters between symbiotic and aposymbiotic insects under various environmental conditions will provide further insights into the symbiont’s biological roles for the stored-product pest.

Paleoecology of benthic foraminifera from the Miocene of the San Jacinto Basin, Colombia

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Poveda, John Sebastian; Fiorini, Flavia; Andres Trejos, Raul; Vallejo, Diego Felipe; Pardo, Andres

2015-04-01

Quantitative benthic foraminifera analysis was conducted on 34 samples collected from a borehole core (393.72m deep) drilled by Colombian Hydrocarbon Agency (ANH) on 2009 in the San Jacinto basin (Northern Colombia). The aims of the research were to define a taxonomical data-bank of Miocene benthic foraminifera for this region, to use the benthic foraminifera assemblages to interpret the paleoenvironment and to identify paleoenvironmental changes. The bottom of the section was dated between lowest Burdigalian to middle Langhian (20.393-17.721 Ma) based on calcareous nannofossils bioevents: LO Helicosphaera ampliaperta, HCO Sphenolithus belemnos and LCO Sphenolithus heteromorphus. The benthic foraminifera fauna identified in the studied samples is composed for the majority of calcareous hyaline tests and is dominated by infaunal taxas. Species belonging to the genera Uvigerina and Lenticulina are commonly occurring in the studied section together with other species typical of outer-shelf upper-bathyal environment. Cibicidoides spp., abundant in the lower part of the section, abruptly decreases in abundance in the upper part. Species belonging to the opportunistic genera Bulimina and Bolivina are more abundant in the upper part of the section. Variability in the abundance of opportunistic species can be associated with tectonic disturbance on the Sinu-San Jacinto fold belt (NW of Colombia) as a result of collision of the Caribbean plate against NW of South America. The tectonics could lead a perturbation on deep ocean sedimentation and circulation.

Recent benthic foraminifera and sedimentary facies distribution of the Abu Dhabi (United Arab Emirates) coastline

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Fiorini, Flavia; Lokier, Stephen W.

2014-05-01

The distribution of benthic foraminifera and sedimentary facies from Recent coastline environments adjacent to the coastline of Abu Dhabi (UAE) was studied in detail with the aim to: 1) provide reliable analogs for understanding and interpreting the depositional environment of ancient shallow-marine sediments from the UAE; 2) assess any modifications in the distribution of benthic environments and sedimentary facies in an area affected by significant anthropogenic activities - particular construction and land reclamation. A total of 100 sea-floor sediment samples were collected in different shallow-marine sedimentary environments (nearshore shelf, beach-front, channels, ooid shoals, lagoon and mangals) close to the coastline of Abu Dhabi Island. Where possible, we revisited the sampling sites used in several studies conducted in the middle of last century (prior to any significant anthropogenic activities) to assess temporal changes in Recent benthic foraminifera and sedimentary facies distribution during the last 50 years. Five foraminiferal assemblages were recognized in the studied area. Species with a porcellaneous test mainly belonging to the genera Quinqueloculina, Triloculina, Spiroloculina, Sigmoilinita are common in all studied areas. Larger benthic foraminifera Peneroplis and Spirolina are particularly abundant in samples collected on seaweed. Hyaline foraminifera mostly belonging to the genera Elphidium, Ammonia, Bolivina and Rosalina are also common together with Miliolidae in the nearshore shelf and beach front. Agglutinated foraminifera (Clavulina, Textularia, Ammobaculites and Reophax) are present in low percentages. The species belonging to the genera Ammobaculites and Reophax are present only in the finest grain samples particularly in lagoons and mangal environments and have not been reported previously in the studied area. The majority of the ooid shoal sediments, the coarser sediments of the beach-front and samples collected in dredged channels

Host-Polarized Cell Growth in Animal Symbionts.

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Pende, Nika; Wang, Jinglan; Weber, Philipp M; Verheul, Jolanda; Kuru, Erkin; Rittmann, Simon K-M R; Leisch, Nikolaus; VanNieuwenhze, Michael S; Brun, Yves V; den Blaauwen, Tanneke; Bulgheresi, Silvia

2018-04-02

To determine the fundamentals of cell growth, we must extend cell biological studies to non-model organisms. Here, we investigated the growth modes of the only two rods known to widen instead of elongating, Candidatus Thiosymbion oneisti and Thiosymbion hypermnestrae. These bacteria are attached by one pole to the surface of their respective nematode hosts. By incubating live Ca. T. oneisti and T. hypermnestrae with a peptidoglycan metabolic probe, we observed that the insertion of new cell wall starts at the poles and proceeds inward, concomitantly with FtsZ-based membrane constriction. Remarkably, in Ca. T. hypermnestrae, the proximal, animal-attached pole grows before the distal, free pole, indicating that the peptidoglycan synthesis machinery is host oriented. Immunostaining of the symbionts with an antibody against the actin homolog MreB revealed that it was arranged medially-that is, parallel to the cell long axis-throughout the symbiont life cycle. Given that depolymerization of MreB abolished newly synthesized peptidoglycan insertion and impaired divisome assembly, we conclude that MreB function is required for symbiont widening and division. In conclusion, our data invoke a reassessment of the localization and function of the bacterial actin homolog. Copyright © 2018 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Fiber, food, fuel, and fungal symbionts.

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Ruehle, J L; Marx, D H

1979-10-26

Virtually all plants of economic importance form mycorrhizae. These absorbing organs of higher plants result from a symbiotic union of beneficial soil fungi and feeder roots. In forestry, the manipulation of fungal symbionts ecologically adapted to the planting site can increase survival and growth of forest trees, particularly on adverse sites. Vesicular-arbuscular mycorrhizae, which occur not only on many trees but also on most cultivated crops, are undoubtedly more important to world food crops. Imperatives for mycorrhizal research in forestry and agriculture are (i) the development of mass inoculum of mycorrhizal fungi, (ii) the interdisciplinary coordination with soil management, plant breeding, cultivation practices, and pest control to ensure maximum survival and development of fungal symbionts in the soil, and (iii) the institution of nursery and field tests to determine the circumstances in which mycorrhizae benefit plant growth in forestry and agri-ecosystems.

Living planktonic foraminifera of the Wadge bank, Northern Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Rao, K.K.; Jayalakshmy, K.V.; Panikkar, B.M.; Kutty, M.K.

Twenty three species of living planktonic Foraminifera belonging to 11 genera have been studied from the Wadge Bank area off southern tip of the Indian peninsula. The fauna is characterized by species such as Globigerinoides conglobatus, G...

Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes

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Zhou Xuguo

2009-10-01

Full Text Available Abstract Background Termite lignocellulose digestion is achieved through a collaboration of host plus prokaryotic and eukaryotic symbionts. In the present work, we took a combined host and symbiont metatranscriptomic approach for investigating the digestive contributions of host and symbiont in the lower termite Reticulitermes flavipes. Our approach consisted of parallel high-throughput sequencing from (i a host gut cDNA library and (ii a hindgut symbiont cDNA library. Subsequently, we undertook functional analyses of newly identified phenoloxidases with potential importance as pretreatment enzymes in industrial lignocellulose processing. Results Over 10,000 expressed sequence tags (ESTs were sequenced from the 2 libraries that aligned into 6,555 putative transcripts, including 171 putative lignocellulase genes. Sequence analyses provided insights in two areas. First, a non-overlapping complement of host and symbiont (prokaryotic plus protist glycohydrolase gene families known to participate in cellulose, hemicellulose, alpha carbohydrate, and chitin degradation were identified. Of these, cellulases are contributed by host plus symbiont genomes, whereas hemicellulases are contributed exclusively by symbiont genomes. Second, a diverse complement of previously unknown genes that encode proteins with homology to lignase, antioxidant, and detoxification enzymes were identified exclusively from the host library (laccase, catalase, peroxidase, superoxide dismutase, carboxylesterase, cytochrome P450. Subsequently, functional analyses of phenoloxidase activity provided results that were strongly consistent with patterns of laccase gene expression. In particular, phenoloxidase activity and laccase gene expression are mostly restricted to symbiont-free foregut plus salivary gland tissues, and phenoloxidase activity is inducible by lignin feeding. Conclusion To our knowledge, this is the first time that a dual host-symbiont transcriptome sequencing effort

Metagenomic Analysis of Microbial Symbionts in a Gutless Worm

Energy Technology Data Exchange (ETDEWEB)

Woyke, Tanja; Teeling, Hanno; Ivanova, Natalia N.; Hunteman, Marcel; Richter, Michael; Gloeckner, Frank Oliver; Boeffelli, Dario; Barry, Kerrie W.; Shapiro, Harris J.; Anderson, Iain J.; Szeto, Ernest; Kyrpides, Nikos C.; Mussmann, Marc; Amann, Rudolf; Bergin, Claudia; Ruehland, Caroline; Rubin, Edward M.; Dubilier, Nicole

2006-05-01

Symbioses between bacteria and eukaryotes are ubiquitous, yet our understanding of the interactions driving these associations is hampered by our inability to cultivate most host-associated microbes. Here we use a metagenomic approach to describe four co-occurring symbionts from the marine oligochaete Olavius algarvensis, a worm lacking a mouth, gut and nephridia. Shotgun sequencing and metabolic pathway reconstruction revealed that the symbionts are sulphur-oxidizing and sulphate-reducing bacteria, all of which are capable of carbon fixation, thus providing the host with multiple sources of nutrition. Molecular evidence for the uptake and recycling of worm waste products by the symbionts suggests how the worm could eliminate its excretory system, an adaptation unique among annelid worms. We propose a model that describes how the versatile metabolism within this symbiotic consortium provides the host with an optimal energy supply as it shuttles between the upper oxic and lower anoxic coastal sediments that it inhabits.

Cyanobacterial diversity and a new acaryochloris-like symbiont from Bahamian sea-squirts.

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Susanna López-Legentil

Full Text Available Symbiotic interactions between ascidians (sea-squirts and microbes are poorly understood. Here we characterized the cyanobacteria in the tissues of 8 distinct didemnid taxa from shallow-water marine habitats in the Bahamas Islands by sequencing a fragment of the cyanobacterial 16S rRNA gene and the entire 16S-23S rRNA internal transcribed spacer region (ITS and by examining symbiont morphology with transmission electron (TEM and confocal microscopy (CM. As described previously for other species, Trididemnum spp. mostly contained symbionts associated with the Prochloron-Synechocystis group. However, sequence analysis of the symbionts in Lissoclinum revealed two unique clades. The first contained a novel cyanobacterial clade, while the second clade was closely associated with Acaryochloris marina. CM revealed the presence of chlorophyll d (chl d and phycobiliproteins (PBPs within these symbiont cells, as is characteristic of Acaryochloris species. The presence of symbionts was also observed by TEM inside the tunic of both the adult and larvae of L. fragile, indicating vertical transmission to progeny. Based on molecular phylogenetic and microscopic analyses, Candidatus Acaryochloris bahamiensis nov. sp. is proposed for this symbiotic cyanobacterium. Our results support the hypothesis that photosymbiont communities in ascidians are structured by host phylogeny, but in some cases, also by sampling location.

Live imaging of symbiosis: spatiotemporal infection dynamics of a GFP-labelled Burkholderia symbiont in the bean bug Riptortus pedestris

Science.gov (United States)

Kikuchi, Yoshitomo; Fukatsu, Takema

2014-01-01

Many insects possess endosymbiotic bacteria inside their body, wherein intimate interactions occur between the partners. While recent technological advancements have deepened our understanding of metabolic and evolutionary features of the symbiont genomes, molecular mechanisms underpinning the intimate interactions remain difficult to approach because the insect symbionts are generally uncultivable. The bean bug Riptortus pedestris is associated with the betaproteobacterial Burkholderia symbiont in a posterior region of the midgut, which develops numerous crypts harbouring the symbiont extracellularly. Distinct from other insect symbiotic systems, R. pedestris acquires the Burkholderia symbiont not by vertical transmission but from the environment every generation. By making use of the cultivability and the genetic tractability of the symbiont, we constructed a transgenic Burkholderia strain labelled with green fluorescent protein (GFP), which enabled detailed observation of spatiotemporal dynamics and the colonization process of the symbiont in freshly prepared specimens. The symbiont live imaging revealed that, at the second instar, colonization of the symbiotic midgut M4 region started around 6 h after inoculation (hai). By 24 hai, the symbiont cells appeared in the main tract and also in several crypts of the M4. By 48 hai, most of the crypts were colonized by the symbiont cells. By 72 hai, all the crypts were filled up with the symbiont cells and the symbiont localization pattern continued during the subsequent nymphal development. Quantitative PCR of the symbiont confirmed the infection dynamics quantitatively. These results highlight the stinkbug-Burkholderia gut symbiosis as an unprecedented model for comprehensive understanding of molecular mechanisms underpinning insect symbiosis. PMID:24103110

Horizontal transmission of the insect symbiont Rickettsia is plant-mediated

Science.gov (United States)

Caspi-Fluger, Ayelet; Inbar, Moshe; Mozes-Daube, Netta; Katzir, Nurit; Portnoy, Vitaly; Belausov, Eduard; Hunter, Martha S.; Zchori-Fein, Einat

2012-01-01

Bacteria in the genus Rickettsia, best known as vertebrate pathogens vectored by blood-feeding arthropods, can also be found in phytophagous insects. The presence of closely related bacterial symbionts in evolutionarily distant arthropod hosts presupposes a means of horizontal transmission, but no mechanism for this transmission has been described. Using a combination of experiments with live insects, molecular analyses and microscopy, we found that Rickettsia were transferred from an insect host (the whitefly Bemisia tabaci) to a plant, moved inside the phloem, and could be acquired by other whiteflies. In one experiment, Rickettsia was transferred from the whitefly host to leaves of cotton, basil and black nightshade, where the bacteria were restricted to the phloem cells of the plant. In another experiment, Rickettsia-free adult whiteflies, physically segregated but sharing a cotton leaf with Rickettsia-plus individuals, acquired the Rickettsia at a high rate. Plants can serve as a reservoir for horizontal transmission of Rickettsia, a mechanism which may explain the occurrence of phylogenetically similar symbionts among unrelated phytophagous insect species. This plant-mediated transmission route may also exist in other insect–symbiont systems and, since symbionts may play a critical role in the ecology and evolution of their hosts, serve as an immediate and powerful tool for accelerated evolution. PMID:22113034

Diversity and Phylogenetic Analyses of Bacterial Symbionts in Three Whitefly Species from Southeast Europe

OpenAIRE

Skaljac, Marisa; Kanakala, Surapathrudu; Zanic, Katja; Puizina, Jasna; Lepen Pleic, Ivana; Ghanim, Murad

2017-01-01

Bemisia tabaci (Gennadius), Trialeurodes vaporariorum (Westwood), and Siphoninus phillyreae (Haliday) are whitefly species that harm agricultural crops in many regions of the world. These insects live in close association with bacterial symbionts that affect host fitness and adaptation to the environment. In the current study, we surveyed the infection of whitefly populations in Southeast Europe by various bacterial symbionts and performed phylogenetic analyses on the different symbionts dete...

Frequency distribution of foraminifera off Trivandrum, west coast of India

Digital Repository Service at National Institute of Oceanography (India)

Rao, K.K.; Kutty, M.K.; Panikkar, B.M.

Fifty two species belonging to 31 genera of recent foraminifera have been identified from sediment samples collected from the inshore waters. Based on relative abundance of species, it is observed that along the coast, the nearshore region up to 5 m...

Recent benthic foraminifera and sedimentary facies from mangrove swamps and channels of Abu Dhabi (United Arab Emirates)

Science.gov (United States)

Fiorini, Flavia; Odeh, Weaam A. S. Al; Lokier, Stephen W.; Paul, Andreas

2016-04-01

Zonation of Recent mangrove environments can be defined using benthic foraminifera, however, little is known about foraminifera from mangrove environments of the Arabian Gulf. The objective of this study is to produce a detailed micropaleontological and sedimentological analysis to identify foraminiferal associations in several coastline environments (mangrove swamps and channels) located on the eastern side of Abu Dhabi Island (UAE). Detailed sediment sampling collection in mangal environments of Eastern Abu Dhabi was carried out to assess the distribution of living and dead benthic foraminifera in different sedimentary facies in the mangal and in the surrounding area comprising natural environments of the upper and lower intertidal area (mud flats and channels) and areas modified by anthropogenic activities (dredged channels). The fine-grain sediments collected near mangrove (Avicenna marina) roots presented a high abundance of living and dead foraminifera tests. The assemblages in these samples show very low diversity and are almost entirely constituted of small-sized opportunistic species belonging to the genera Ammonia and Elphidium. In particular: • Samples collected on the mud flat and in ponds at the margin of the channel show a foraminiferal assemblage characterised by abundant foraminifera belonging to the genera Ammonia, Elphidium, Triloculina, Quinqueloculina, Peneroplis and Spirolina. • Samples collected in the lower (wet) intertidal area close to Avicenna marina roots, presented a low-diversity assemblage mostly comprising opportunistic foraminifera of the genera Ammonia and Elphidium along with rare miliolidae. • Samples from the upper intertidal area (dry) close to Avicenna marina roots, produced an assemblage exclusively composed of small-sized opportunistic Ammonia and Elphidium, together with abundant specimens belonging to the genera Trochammina. Throchammina specimens have not been previously recorded from Recent sedimentary samples of

Cellular tropism, population dynamics, host range and taxonomic status of an aphid secondary symbiont, SMLS (Sitobion miscanthi L type symbiont.

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Tong Li

Full Text Available SMLS (Sitobion miscanthi L type symbiont is a newly reported aphid secondary symbiont. Phylogenetic evidence from molecular markers indicates that SMLS belongs to the Rickettsiaceae and has a sibling relationship with Orientia tsutsugamushi. A comparative analysis of coxA nucleotide sequences further supports recognition of SMLS as a new genus in the Rickettsiaceae. In situ hybridization reveals that SMLS is housed in both sheath cells and secondary bacteriocytes and it is also detected in aphid hemolymph. The population dynamics of SMLS differ from those of Buchnera aphidicola and titer levels of SMLS increase in older aphids. A survey of 13 other aphids reveals that SMLS only occurs in wheat-associated species.

Niche acclimatization in Red Sea corals is dependent on flexibility of host-symbiont association

KAUST Repository

Ziegler, Maren; Roder, Cornelia; Bü chel, C; Voolstra, Christian R.

2015-01-01

Knowledge of host-symbiont specificity and acclimatization capacity of corals is crucial for understanding implications of environmental change. Whilst some corals have been shown to associate with a number of symbionts that may comprise different physiologies, most corals associate with only one dominant Symbiodinium species at a time. Coral communities in the Red Sea thrive under large fluctuations of environmental conditions, but the degree and mechanisms of coral acclimatization are largely unexplored. Here we investigated the potential for niche acclimatization in 2 dominant corals from the central Red Sea, Pocillopora verrucosa and Porites lutea, in relation to the fidelity of the underlying coral-symbiont association. Repeated sampling over 2 seasons along a cross-shelf and depth gradient revealed a stable symbiont association in P. verrucosa and flexible association in P. lutea. A statistical biological-environmental matching routine revealed that the high plasticity of photophysiology and photopigments in the stable Symbiodinium microadriaticum (type A1) community in P. verrucosa were correlated with environmental influences along spatio-temporal dimensions. In contrast, photophysiology and pigments were less variable within each symbiont type from P. lutea indicating that niche acclimatization was rather regulated by a flexible association with a variable Symbiodinium community. Based on these data, we advocate an extended concept of phenotypic plasticity of the coral holobiont, in which the scleractinian host either associates with a specific Symbiodinium type with a broad physiological tolerance, or the host-symbiont pairing is more flexible to accommodate for different symbiont associations, each adapted to specific environmental settings.

Niche acclimatization in Red Sea corals is dependent on flexibility of host-symbiont association

KAUST Repository

Ziegler, Maren

2015-08-06

Knowledge of host-symbiont specificity and acclimatization capacity of corals is crucial for understanding implications of environmental change. Whilst some corals have been shown to associate with a number of symbionts that may comprise different physiologies, most corals associate with only one dominant Symbiodinium species at a time. Coral communities in the Red Sea thrive under large fluctuations of environmental conditions, but the degree and mechanisms of coral acclimatization are largely unexplored. Here we investigated the potential for niche acclimatization in 2 dominant corals from the central Red Sea, Pocillopora verrucosa and Porites lutea, in relation to the fidelity of the underlying coral-symbiont association. Repeated sampling over 2 seasons along a cross-shelf and depth gradient revealed a stable symbiont association in P. verrucosa and flexible association in P. lutea. A statistical biological-environmental matching routine revealed that the high plasticity of photophysiology and photopigments in the stable Symbiodinium microadriaticum (type A1) community in P. verrucosa were correlated with environmental influences along spatio-temporal dimensions. In contrast, photophysiology and pigments were less variable within each symbiont type from P. lutea indicating that niche acclimatization was rather regulated by a flexible association with a variable Symbiodinium community. Based on these data, we advocate an extended concept of phenotypic plasticity of the coral holobiont, in which the scleractinian host either associates with a specific Symbiodinium type with a broad physiological tolerance, or the host-symbiont pairing is more flexible to accommodate for different symbiont associations, each adapted to specific environmental settings.

Planktonic Foraminifera Proxies Calibration Off the NW Iberian Margin: Nutrients Approach

Science.gov (United States)

Salgueiro, E.; Castro, C. G.; Zuniga, D.; Martin, P. A.; Groeneveld, J.; de la Granda, F.; Villaceiros-Robineau, N.; Alonso-Perez, F.; Alberto, A.; Rodrigues, T.; Rufino, M. M.; Abrantes, F. F. G.; Voelker, A. H. L.

2014-12-01

Planktonic foraminifera (PF) shells preserved in marine sediments are a useful tool to reconstruct productivity conditions at different geological timescales. However, the accuracy of these paleoreconstructions depends on the data set and calibration quality. Several calibration works have been defining and improving the use of proxies for productivity and nutrient cycling parameters. Our contribution is centred on a multi-proxy calibration at a regional coastal upwelling system. To minimize the existing uncertainties affecting the use of trace elements and C stable isotopes as productivity proxy in the high productivity upwelling areas, we investigate the content and distribution of Ba/Ca and δ13C in the water column, its transference into the planktonic foraminifera shells, and, how the living planktonic foraminifera Ba/Ca and δ13C signal is related to the same planktonic foraminiferal species preserved in the sediment record. This study is based on a large data set from two stations (RAIA - 75m water depth, and CALIBERIA - 350m water depth) located off the NW Iberian margin (41.5-42.5ºN; 9-10ºW), and includes: i) two year monthly water column data (temperature, salinity, nutrients, chlorophyll a, Ba/Ca, and δ13C-DIC); ii) seasonal Ba/Ca, δ13C in several living PF species at both stations; and iii) Ba/Ca and δ13C in several PF species from a large set of core-top sediment samples in the study region. Additionally, total organic carbon and total alkenones were also measured in the sediment. Our results showed the link between productivity proxies in the surface sediment foraminifera assemblage and the processes regulating the actual phytoplankton dynamics in an upwelling area. The understanding of this relationship has special relevance since it gives fundamental information related to the past oceanic biogeochemistry and/or climate and improves the prevision of future changes against possible climate variability due to anthropogenic forcing.

Pre-monsoon living planktonic foraminifera from the Southeastern Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Guptha, M.V.S.; Naidu, P.D.; Muralinath, A.S.

LOGICAL SoCIETY OF INDIA Vol. 36, Dec. 1990, pp. 654 to 660 Pre-Monsoon Living Planktonic Foraminifera from the Southeastern Arabian Sea M. V. S. GUPTHA.. P. DIVAKAR NAlDU AND A. S. MURALINATH Nalional Institute of Oceanography, Dona Paula, Goa 403004...

Carbon isotopic fractionation in live benthic foraminifera -comparison with inorganic precipitate studies

International Nuclear Information System (INIS)

Grossmann, E.L.

1984-01-01

Carbon and oxygen isotopic analyses have been performed on live-stained aragonitic and calcitic benthic foraminifera and dissolved inorganic carbon from the Southern California Borderland to examine carbon isotopic fractionation in foraminifera. Temperature, salinity and pH data have also been collected to permit accurate determination of the delta 13 C of bicarbonate ion and thus aragonite-HCO 3 - and calcite-HCO 3 - isotopic enrichment factors (epsilonsub(ar-b) and epsilonsub(cl-b), respectively). Only species which precipitate in 18 O equilibrium have been considered. epsilonsub (ar-b) values based on Hoeglundina elegans range from 1.9 per mille at 2.7 deg C to 1.1 per mille at 9.5 deg C. The temperature dependence of epsilonsub(ar-b) is considerably greater than the equilibrium equation would predict and may be due to a vital effect. The calcitic foraminifera Cassidulina tortuosa, Cassidulina braziliensis, and Cassidulina limbata, Bank and Terrace dwellers, have similar delta 13 C values and yield an average epsilonsub(cl-b) value of -0.2 +- 0.1 per mille between 8 deg and 10 deg C. Calcitic Uvigerina curticosta, Uvigerina peregrina, and megalospheric B, argentea, Slope and Basin dwellers, are -0.7 +- 0.1 per mille enriched relative to ambient bicarbonate for 3 to 9 deg C. (author)

Proloculus size variation in Recent benthic foraminifera: Implications for paleoclimatic studies

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.; Rao, A.S.

Ratios of dimorphic (microspheric/megalospheric) forms of Foraminifera are affected by temperature and hence are useful in paleoclimatic studies. In some cases, however, it is not possible to distinguish between the dimorphic forms and, therefore...

Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology

Directory of Open Access Journals (Sweden)

R. Morard

2017-06-01

Full Text Available Deep-sea sediments constitute a unique archive of ocean change, fueled by a permanent rain of mineral and organic remains from the surface ocean. Until now, paleo-ecological analyses of this archive have been mostly based on information from taxa leaving fossils. In theory, environmental DNA (eDNA in the sediment has the potential to provide information on non-fossilized taxa, allowing more comprehensive interpretations of the fossil record. Yet, the process controlling the transport and deposition of eDNA onto the sediment and the extent to which it preserves the features of past oceanic biota remains unknown. Planktonic foraminifera are the ideal taxa to allow an assessment of the eDNA signal modification during deposition because their fossils are well preserved in the sediment and their morphological taxonomy is documented by DNA barcodes. Specifically, we re-analyze foraminiferal-specific metabarcodes from 31 deep-sea sediment samples, which were shown to contain a small fraction of sequences from planktonic foraminifera. We confirm that the largest portion of the metabarcode originates from benthic bottom-dwelling foraminifera, representing the in situ community, but a small portion (< 10 % of the metabarcodes can be unambiguously assigned to planktonic taxa. These organisms live exclusively in the surface ocean and the recovered barcodes thus represent an allochthonous component deposited with the rain of organic remains from the surface ocean. We take advantage of the planktonic foraminifera portion of the metabarcodes to establish to what extent the structure of the surface ocean biota is preserved in sedimentary eDNA. We show that planktonic foraminifera DNA is preserved in a range of marine sediment types, the composition of the recovered eDNA metabarcode is replicable and that both the similarity structure and the diversity pattern are preserved. Our results suggest that sedimentary eDNA could preserve the ecological structure of

Low Latitude Pelagic Foraminifera Found in the Hudson River: Are They Hurricane Deposits?

Science.gov (United States)

Monahan, K. M.; Abbott, D. H.; Hoenisch, B.; Breger, D.

2011-12-01

River sediment cores provide a record of past environmental changes through stacked layers of sediments. In core CD02-29A, recovered from the southern Hudson River, a significant number of tropical planktic foraminifer tests were found. Foraminifera were concentrated in sediment layers of low impedance, suggesting high carbonate content. Because modern planktic foraminifera are exclusively marine, their presence in Hudson sediments in the core was remarkable. We can think of only two mechanisms that could explain this observation: either living specimens are carried upriver with the daily tides, or storm surges carry large amounts of seawater and re-suspended marine sediment upriver. To test for the presence of living specimens in Hudson River water, plankton tow samples were collected during high tide at the Hudson Battery south of the sample site, and at Piermont Pier north of the sample site and no living foraminifera were found. In addition, oxygen isotope (δ18O) analyses reveal a marine composition but the large difference in δ18O between the two surface dwelling species Globigerinoides ruber (pink) and Globigerinoides sacculifer, picked from the same sediment layer, suggests re-suspension and mixing of marine sediment deposits. Because only planktic, tropical to subtropical foraminiferal assemblages were found, the Hudson River deposits differ from previously recorded storm deposits found on Long Island and in New Jersey. In particular, the foraminiferal assemblages contain up to 40% G. ruber (pink), suggesting a highly tropical signal from a location where abundances of G. ruber are very low. This data, in addition to the pulsed occurrence of tests in the sediment suggests that the introduction of planktic foraminifera into the Hudson River must be driven by rare events. We suggest that storm surges from rare high-intensity hurricanes most likely explain the presence of these tests in Hudson River sediments, possibly assisted by the Gulf Stream entraining

Benthic foraminifera from the Adriatic Sea : principles of phenotypic variation

NARCIS (Netherlands)

Jorissen, F.J.

1988-01-01

The distribution and morphology of the benthic foraminifera in the Adriatic Sea appear to be strongly dependent on two primary controlling environmental parameters, oxygen concentration and food availability. These factors are both governed by the runoff from the Po and other Italian rivers, and

Seaweed fails to prevent ocean acidification impact on foraminifera along a shallow-water CO2 gradient.

Science.gov (United States)

Pettit, Laura R; Smart, Christopher W; Hart, Malcolm B; Milazzo, Marco; Hall-Spencer, Jason M

2015-05-01

Ocean acidification causes biodiversity loss, alters ecosystems, and may impact food security, as shells of small organisms dissolve easily in corrosive waters. There is a suggestion that photosynthetic organisms could mitigate ocean acidification on a local scale, through seagrass protection or seaweed cultivation, as net ecosystem organic production raises the saturation state of calcium carbonate making seawater less corrosive. Here, we used a natural gradient in calcium carbonate saturation, caused by shallow-water CO2 seeps in the Mediterranean Sea, to assess whether seaweed that is resistant to acidification (Padina pavonica) could prevent adverse effects of acidification on epiphytic foraminifera. We found a reduction in the number of species of foraminifera as calcium carbonate saturation state fell and that the assemblage shifted from one dominated by calcareous species at reference sites (pH ∼8.19) to one dominated by agglutinated foraminifera at elevated levels of CO2 (pH ∼7.71). It is expected that ocean acidification will result in changes in foraminiferal assemblage composition and agglutinated forms may become more prevalent. Although Padina did not prevent adverse effects of ocean acidification, high biomass stands of seagrass or seaweed farms might be more successful in protecting epiphytic foraminifera.

Mechanisms of symbiont-conferred protection against natural enemies: an ecological and evolutionary framework.

Science.gov (United States)

Gerardo, Nicole M; Parker, Benjamin J

2014-10-01

Many vertically-transmitted microbial symbionts protect their insect hosts from natural enemies, including host-targeted pathogens and parasites, and those vectored by insects to other hosts. Protection is often achieved through production of inhibiting toxins, which is not surprising given that toxin production mediates competition in many environments. Classical models of macroecological interactions, however, demonstrate that interspecific competition can be less direct, and recent research indicates that symbiont-protection can be mediated through exploitation of limiting resources, and through activation of host immune mechanisms that then suppress natural enemies. Available data, though limited, suggest that effects of symbionts on vectored pathogens and parasites, as compared to those that are host-targeted, are more likely to result from symbiont activation of the host immune system. We discuss these different mechanisms in light of their potential impact on the evolution of host physiological processes. Copyright © 2014 Elsevier Inc. All rights reserved.

The geographical patterns of symbiont diversity in the invasive legume Mimosa pudica can be explained by the competitiveness of its symbionts and by the host genotype.

Science.gov (United States)

Melkonian, Rémy; Moulin, Lionel; Béna, Gilles; Tisseyre, Pierre; Chaintreuil, Clémence; Heulin, Karine; Rezkallah, Naïma; Klonowska, Agnieszka; Gonzalez, Sophie; Simon, Marcelo; Chen, Wen-Ming; James, Euan K; Laguerre, Gisèle

2014-07-01

Variations in the patterns of diversity of symbionts have been described worldwide on Mimosa pudica, a pan-tropical invasive species that interacts with both α and β-rhizobia. In this study, we investigated if symbiont competitiveness can explain these variations and the apparent prevalence of β- over α-rhizobia. We developed an indirect method to measure the proportion of nodulation against a GFP reference strain and tested its reproducibility and efficiency. We estimated the competitiveness of 54 strains belonging to four species of β-rhizobia and four of α-rhizobia, and the influence of the host genotype on their competitiveness. Our results were compared with biogeographical patterns of symbionts and host varieties. We found: (i) a strong strain effect on competitiveness largely explained by the rhizobial species, with Burkholderia phymatum being the most competitive species, followed by B. tuberum, whereas all other species shared similar and reduced levels of competitiveness; (ii) plant genotype can increase the competitiveness of Cupriavidus taiwanensis. The latter data support the likelihood of the strong adaptation of C. taiwanensis with the M. pudica var. unijuga and help explain its prevalence as a symbiont of this variety over Burkholderia species in some environments, most notably in Taiwan. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.

Earthworm ecology affects the population structure of their Verminephrobacter symbionts

DEFF Research Database (Denmark)

Macedo Viana, Flavia Daniela; Jensen, Christopher Erik; Macey, Michael

2016-01-01

from two contrasting ecological types of earthworm hosts: the high population density, fast reproducing compost worms, Eisenia andrei and E. fetida, and the low-density, slow reproducing Aporrectodea tuberculata, commonly found in garden soils; for both types, three distinct populations were...... across host individuals from the same population. Thus, host ecology shapes the population structure of the Verminephrobacter symbionts. The homogeneous symbiont populations in the compost worms indicate that Verminephrobacter can be transferred bi-parentally or via leaky horizontal transmission in high...

Acquisition of a Novel Sulfur-Oxidizing Symbiont in the Gutless Marine Worm Inanidrilus exumae

Science.gov (United States)

2018-01-01

ABSTRACT Gutless phallodrilines are marine annelid worms without a mouth or gut, which live in an obligate association with multiple bacterial endosymbionts that supply them with nutrition. In this study, we discovered an unusual symbiont community in the gutless phallodriline Inanidrilus exumae that differs markedly from the microbiomes of all 22 of the other host species examined. Comparative 16S rRNA gene sequence analysis and fluorescence in situ hybridization revealed that I. exumae harbors cooccurring gamma-, alpha-, and deltaproteobacterial symbionts, while all other known host species harbor gamma- and either alpha- or deltaproteobacterial symbionts. Surprisingly, the primary chemoautotrophic sulfur oxidizer “Candidatus Thiosymbion” that occurs in all other gutless phallodriline hosts does not appear to be present in I. exumae. Instead, I. exumae harbors a bacterial endosymbiont that resembles “Ca. Thiosymbion” morphologically and metabolically but originates from a novel lineage within the class Gammaproteobacteria. This endosymbiont, named Gamma 4 symbiont here, had a 16S rRNA gene sequence that differed by at least 7% from those of other free-living and symbiotic bacteria and by 10% from that of “Ca. Thiosymbion.” Sulfur globules in the Gamma 4 symbiont cells, as well as the presence of genes characteristic for autotrophy (cbbL) and sulfur oxidation (aprA), indicate that this symbiont is a chemoautotrophic sulfur oxidizer. Our results suggest that a novel lineage of free-living bacteria was able to establish a stable and specific association with I. exumae and appears to have displaced the “Ca. Thiosymbion” symbionts originally associated with these hosts. IMPORTANCE All 22 gutless marine phallodriline species examined to date live in a highly specific association with endosymbiotic, chemoautotrophic sulfur oxidizers called “Ca. Thiosymbion.” These symbionts evolved from a single common ancestor and represent the ancestral trait for

Investigations on abundance and activity of microbial sponge symbionts using quantitative real - time PCR

DEFF Research Database (Denmark)

Kumala, Lars; Hentschel, Ute; Bayer, Kristina

Marine sponges are hosts to dense and diverse microbial consortia that are likely to play a key role in the metabolic processes of the host sponge due to their enormous abundance. Common symbioses between nitrogen transforming microorganisms and sponges indicate complex nitrogen cycling within...... the host. Of particular interest is determining the community structure and function of microbial symbionts in order to gain deeper insight into host-symbiont interactions. We investigated the abundance and activity of microbial symbionts in two Mediterranean sponge species using quantitative real-time PCR....... An absolute quantification of functional genes and transcripts in archaeal and bacterial symbionts was conducted to determine their involvement in nitrification and denitrification, comparing the low microbial abundance (LMA) sponge Dysidea avara with the high microbial abundance (HMA) representative Aplysina...

Co-Speciation of Earthworms and their nephridial symbionts, Acidovorax Spp

DEFF Research Database (Denmark)

Lund, Marie Braad; Fritz, Michael; Holmstrup, Martin

2006-01-01

the extracted DNA. The presence of the symbionts in the ampulla was verified by performing fluorescence in situ hybridization (FISH) on all worm species using an Acidovorax-specific probe. Earthworm and symbiont phylogeny was largely congruent, indicating that host and symbiont have indeed co-evolved since...... the initial bacterial colonization of an ancestral lumbricid worm. However, the association is complicated by the recent discovery of additional, putative symbiotic bacteria which have been detected in the ampulla of several earthworms by FISH. Identity, distribution among earthworms, and function...... within the genus Acidovorax [2], and they are transmitted vertically [3]. For these reasons, we suggest that the earthworm-Acidovorax association has evolved by co-speciation. This hypothesis was tested by a comparative study of earthworm and symbiont phylogeny. Different earthworm species were collected...

Towards radiocarbon dating of single foraminifera with a gas ion source

Science.gov (United States)

Wacker, L.; Lippold, J.; Molnár, M.; Schulz, H.

2013-01-01

Carbonate shells from foraminifera are often analysed for radiocarbon to determine the age of deep-sea sediments or to assess radiocarbon reservoir ages. However, a single foraminiferal test typically contains only a few micrograms of carbon, while most laboratories require more than 100 μg for radiocarbon dating with an accelerator mass spectrometry (AMS) system. The collection of the required amount of foraminifera for a single analyses is therefore time consuming and not always possible. Here, we present a convenient method to measure the radiocarbon content of foraminifera using an AMS system fitted with a gas ion source. CO2 is liberated from 150 to 1150 μg of carbonate in septum sealed vials by acid decomposition of the carbonate. The CO2 is collected on a zeolite trap and subsequently transferred to a syringe from where it is delivered to the ion source. A sample of 400 μg (50 μg C) typically gives a 12C- ion source current of 10-15 μA over 20 min, yielding a measurement precision of less than 7 per mil for a modern sample. Using this method, we were able to date a single 560 μg Cibicides pseudoungerianus test at 14,030 ± 160 radiocarbon years. Only a minor modification to our existing gas handling system was required and the system is fully automatable to further reduce the effort involved for sample preparation.

Towards radiocarbon dating of single foraminifera with a gas ion source

International Nuclear Information System (INIS)

Wacker, L.; Lippold, J.; Molnár, M.; Schulz, H.

2013-01-01

Carbonate shells from foraminifera are often analysed for radiocarbon to determine the age of deep-sea sediments or to assess radiocarbon reservoir ages. However, a single foraminiferal test typically contains only a few micrograms of carbon, while most laboratories require more than 100 μg for radiocarbon dating with an accelerator mass spectrometry (AMS) system. The collection of the required amount of foraminifera for a single analyses is therefore time consuming and not always possible. Here, we present a convenient method to measure the radiocarbon content of foraminifera using an AMS system fitted with a gas ion source. CO 2 is liberated from 150 to 1150 μg of carbonate in septum sealed vials by acid decomposition of the carbonate. The CO 2 is collected on a zeolite trap and subsequently transferred to a syringe from where it is delivered to the ion source. A sample of 400 μg (50 μg C) typically gives a 12 C − ion source current of 10–15 μA over 20 min, yielding a measurement precision of less than 7 per mil for a modern sample. Using this method, we were able to date a single 560 μg Cibicides pseudoungerianus test at 14,030 ± 160 radiocarbon years. Only a minor modification to our existing gas handling system was required and the system is fully automatable to further reduce the effort involved for sample preparation.

Towards radiocarbon dating of single foraminifera with a gas ion source

Energy Technology Data Exchange (ETDEWEB)

Wacker, L., E-mail: wacker@phys.ethz.ch [Laboratory of Ion Beam Physics, ETH Zurich, 8093 Zurich (Switzerland); Lippold, J. [Heidelberg Academy of Sciences, 69120 Heidelberg (Germany); Molnar, M. [Laboratory of Ion Beam Physics, ETH Zurich, 8093 Zurich (Switzerland); Institute of Nuclear Research, Hungarian Academy of Sciences, 4026 Debrecen (Hungary); Schulz, H. [Institute for Geosciencies, University of Tuebingen, 72076 Tuebingen (Germany)

2013-01-15

Carbonate shells from foraminifera are often analysed for radiocarbon to determine the age of deep-sea sediments or to assess radiocarbon reservoir ages. However, a single foraminiferal test typically contains only a few micrograms of carbon, while most laboratories require more than 100 {mu}g for radiocarbon dating with an accelerator mass spectrometry (AMS) system. The collection of the required amount of foraminifera for a single analyses is therefore time consuming and not always possible. Here, we present a convenient method to measure the radiocarbon content of foraminifera using an AMS system fitted with a gas ion source. CO{sub 2} is liberated from 150 to 1150 {mu}g of carbonate in septum sealed vials by acid decomposition of the carbonate. The CO{sub 2} is collected on a zeolite trap and subsequently transferred to a syringe from where it is delivered to the ion source. A sample of 400 {mu}g (50 {mu}g C) typically gives a {sup 12}C{sup -} ion source current of 10-15 {mu}A over 20 min, yielding a measurement precision of less than 7 per mil for a modern sample. Using this method, we were able to date a single 560 {mu}g Cibicides pseudoungerianus test at 14,030 {+-} 160 radiocarbon years. Only a minor modification to our existing gas handling system was required and the system is fully automatable to further reduce the effort involved for sample preparation.

Decalcification of benthic foraminifera due to "Hebei Spirit" oil spill, Korea.

Science.gov (United States)

Lee, Yeon Gyu; Kim, Shin; Jeong, Da Un; Lee, Jung Sick; Woo, Han Jun; Park, Min Woo; Kim, Byeong Hak; Son, Maeng Hyun; Choi, Yang Ho

2014-10-15

In order to determine the effects on foraminifera due to spilled crude oil in the "Herbei Spirit" incident, a study of benthic foraminiferal assemblages was carried out on sediment samples collected from the Sogeunri tidal flat, Taean Peninsula, Korea. Breakages of the chambers in the Ammonia beccarii and Elphidium subincertum species of the Sogeunri tidal flat with a low pH (6.98 on average) were marked. These chamber breakages occurred in 71.6% of A. beccarii and are thought to be caused by decalcification due to the fall in pH resulting from the "Hebei Spirit" oil spill. The factors that affect breakage of the chamber in benthic foraminifera under low pH condition may be not only deto decalcification but also to exposure duration of substrata in the tidal flat spilled crude oil. Copyright © 2014 Elsevier Ltd. All rights reserved.

Foraminifera Population from South Africa Coast Line (Indian and Atlantic Oceans

Directory of Open Access Journals (Sweden)

Engin Meriç

2014-11-01

Full Text Available Cape Town is the second-largest city of the Republic of South Africa. Research is conducted in 3 different stations: Maori Bay, which lies in the southwest of Cape Town, and Pyramid Rock and Partridge Points which lies in the False Bay, southeast part of Cape Town. Samples are taken from young sediments at 10.00 and 20.00 m depths, and collected by scuba-diving method. The aim of the study is to investigate the living benthic foraminifera assemblages in the Atlantic Ocean, and to compare these assemblages with the southeastern part of the Atlantic Ocean, the Arabian Sea, Indian Ocean and Western Pacific assemblages. Moreover, the aim of the study is to determine whether there are any benthic foraminifera forms reaching to the Mediterranean from Pacific Ocean, Indian Ocean or Red Sea via Suez Channel.

Behavior of bacteriome symbionts during transovarial transmission and development of the Asian citrus psyllid.

Directory of Open Access Journals (Sweden)

Hiroki Dan

Full Text Available The Asian citrus psyllid Diaphorina citri Kuwayama (Hemiptera: Liviidae is a serious pest worldwide, transmitting Candidatus Liberibacter spp. (Alphaproteobacteria, the causative agents of a devastating citrus disease known as huanglongbing or greening disease. In a symbiotic organ called the bacteriome, D. citri possesses an organelle-like defensive symbiont, Candidatus Profftella armatura (Betaproteobacteria, and a nutritional symbiont, Ca. Carsonella ruddii (Gammaproteobacteria. Drastically reduced symbiont genomes and metabolic complementarity among the symbionts and D. citri indicate their mutually indispensable association. Moreover, horizontal gene transfer between the Profftella and Liberibacter lineages suggests ecological and evolutionary interactions between the bacteriome symbiont and the HLB pathogen. Using fluorescence in situ hybridization, we examined the behavior of Profftella and Carsonella during transovarial transmission and the development of D. citri. In the bacteriomes of sexually-mature female adults, symbionts transformed from an extremely elongated tubular form into spherical or short-rod forms, which migrated toward the ovary. The symbionts then formed mosaic masses, which entered at the posterior pole of the vitellogenic oocytes. After anatrepsis, Carsonella and Profftella migrated to the central and peripheral parts of the mass, respectively. Following the appearance of host nuclei, the mass cellularized, segregating Carsonella and Profftella in the central syncytium and peripheral uninucleate bacteriocytes, respectively. Subsequently, the uninucleate bacteriocytes harboring Profftella assembled at the posterior pole, while the syncytium, containing Carsonella, sat on the anterior side facing the germ band initiating katatrepsis. During dorsal closure, the syncytium was divided into uninuclear bacteriocytes, which surrounded the mass of bacteriocytes containing Profftella. Once fully surrounded, the bacteriocyte mass

Three dimensional morphological studies of Larger Benthic Foraminifera at the population level using micro computed tomography

Science.gov (United States)

Kinoshita, Shunichi; Eder, Wolfgang; Woeger, Julia; Hohenegger, Johann; Briguglio, Antonino; Ferrandez-Canadell, Carles

2015-04-01

Symbiont-bearing larger benthic Foraminifera (LBF) are long-living marine (at least 1 year), single-celled organisms with complex calcium carbonate shells. Their morphology has been intensively studied since the middle of the nineteenth century. This led to a broad spectrum of taxonomic results, important from biostratigraphy to ecology in shallow water tropical to warm temperate marine palaeo-environments. However, it was necessary for the traditional investigation methods to cut or destruct specimens for analysing the taxonomically important inner structures. X-ray micro-computed tomography (microCT) is one of the newest techniques used in morphological studies. The greatest advantage is the non-destructive acquisition of inner structures. Furthermore, the running improve of microCT scanners' hard- and software provides high resolution and short time scans well-suited for LBF. Three-dimensional imaging techniques allow to select and extract each chamber and to measure easily its volume, surface and several form parameters used for morphometric analyses. Thus, 3-dimensional visualisation of LBF-tests is a very big step forward from traditional morphology based on 2-dimensional data. The quantification of chamber form is a great opportunity to tackle LBF structures, architectures and the bauplan geometry. The micrometric digital resolution is the only way to solve many controversies in phylogeny and evolutionary trends of LBF. For the present study we used micro-computed tomography to easily investigate the chamber number of every specimen from statistically representative part of populations to estimate population dynamics. Samples of living individuals are collected at monthly intervals from fixed locations. Specific preparation allows to scan up to 35 specimens per scan within 2 hours and to obtain the complete digital dataset for each specimen of the population. MicroCT enables thus a fast and precise count of all chambers built by the foraminifer from its

Symbiosis within Symbiosis: Evolving Nitrogen-Fixing Legume Symbionts.

Science.gov (United States)

Remigi, Philippe; Zhu, Jun; Young, J Peter W; Masson-Boivin, Catherine

2016-01-01

Bacterial accessory genes are genomic symbionts with an evolutionary history and future that is different from that of their hosts. Packages of accessory genes move from strain to strain and confer important adaptations, such as interaction with eukaryotes. The ability to fix nitrogen with legumes is a remarkable example of a complex trait spread by horizontal transfer of a few key symbiotic genes, converting soil bacteria into legume symbionts. Rhizobia belong to hundreds of species restricted to a dozen genera of the Alphaproteobacteria and Betaproteobacteria, suggesting infrequent successful transfer between genera but frequent successful transfer within genera. Here we review the genetic and environmental conditions and selective forces that have shaped evolution of this complex symbiotic trait. Copyright © 2015 Elsevier Ltd. All rights reserved.

A Record of Rotaloid Foraminifera from the Upper Permian-Lower ...

African Journals Online (AJOL)

PRABHAS PANDE

INTRODUCTION. In the history of organic evolution, the end of Palaeozoic Era was marked by the conspicuous event of mass extinctions. Amongst foraminifera, as many as fourteen families became extinct. (Loeblich and Tappan, 1964) during the Permian Period and many new families evolved in the. Mesozoic. There is a ...

The intriguing relationship between coiling direction and reproductive mode in benthic foraminifera

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.; Rao, A

direction changes. The relationship between mode of reproduction and coiling directions in benthic foraminifera is explored. Benthic foraminiferal species Cavarotalia annectens (Paarker & Jones) in 58 samples obtained from a core off Karwar, west coast...

Ephemeral windows of opportunity for horizontal transmission of fungal symbionts in leaf-cutting ants

DEFF Research Database (Denmark)

Poulsen, Michael; Fernández-Marín, Hermógenes; Currie, Cameron R.

2009-01-01

Evolutionary theory predicts that hosts are selected to prevent mixing of genetically different symbionts when competition among lineages reduces the productivity of a mutualism. The symbionts themselves may also defend their interests: recent studies of Acromyrmex leaf-cutting ants showed that s...

Relationship between abundance and morphology of benthic foraminifera Epistominella exigua: Palaeoclimatic implications

Digital Repository Service at National Institute of Oceanography (India)

Saraswat, R.; Deopujari, A.; Nigam, R.; Henriques, P.J.

The relationship between abundance (relative as well as absolute abundance) and morphology (size of the shell, numbers and proloculus size) of benthic foraminifera Epistominella exigua has been studied in a core to understand the influence...

Secondary calcification of planktic foraminifera from the Indian sector of Southern ocean

Digital Repository Service at National Institute of Oceanography (India)

Mohan, R.; Shetye, S.; Tiwari, M.; AnilKumar, N.

This study focused on planktic foraminifera in plankton tows and surface sediments from the western Indian sector of Southern Ocean in order to evaluate the potential foraminiferal secondary calcification and/or dissolution in the sediment...

On the phylogeny of the embryonic apparatus of some Foraminifera

NARCIS (Netherlands)

Cosijn, A.J.

1942-01-01

In the following pages data will be given about the size of the megalospheric embryonic apparatus, and of the size of the shell, of some Foraminifera. By comparing these data for a certain species from different samples, the relative ages of which are known, it will be possible, to get an insight

Relationship between benthic foraminifera and sediment in the estuarine complex of Goa

Digital Repository Service at National Institute of Oceanography (India)

Dalal, S.G.

Two indices of community association were used to elucidate the relationship between changes in species composition of benthic foraminifera and changes in the grain size composition of the sediment in estuarine complex of Goa. The degree...

Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont "Candidatus Synechococcus pongiarum"

KAUST Repository

Gao, Zhao-Ming

2014-04-01

"Candidatus Synechococcus spongiarum" is a cyanobacterial symbiont widely distributed in sponges, but its functions at the genome level remain unknown. Here, we obtained the draft genome (1.66 Mbp, 90% estimated genome recovery) of "Ca. Synechococcus spongiarum" strain SH4 inhabiting the Red Sea sponge Carteriospongia foliascens. Phylogenomic analysis revealed a high dissimilarity between SH4 and free-living cyanobacterial strains. Essential functions, such as photosynthesis, the citric acid cycle, and DNA replication, were detected in SH4. Eukaryoticlike domains that play important roles in sponge-symbiont interactions were identified exclusively in the symbiont. However, SH4 could not biosynthesize methionine and polyamines and had lost partial genes encoding low-molecular-weight peptides of the photosynthesis complex, antioxidant enzymes, DNA repair enzymes, and proteins involved in resistance to environmental toxins and in biosynthesis of capsular and extracellular polysaccharides. These genetic modifications imply that "Ca. Synechococcus spongiarum" SH4 represents a low-light-adapted cyanobacterial symbiont and has undergone genome streamlining to adapt to the sponge\\'s mild intercellular environment. 2014 Gao et al.

Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont "Candidatus Synechococcus pongiarum"

KAUST Repository

Gao, Zhao-Ming; Wang, Yong; Tian, Ren-Mao; Wong, Yue Him; Batang, Zenon B.; Al-Suwailem, Abdulaziz M.; Bajic, Vladimir B.; Qian, Pei-Yuan

2014-01-01

"Candidatus Synechococcus spongiarum" is a cyanobacterial symbiont widely distributed in sponges, but its functions at the genome level remain unknown. Here, we obtained the draft genome (1.66 Mbp, 90% estimated genome recovery) of "Ca. Synechococcus spongiarum" strain SH4 inhabiting the Red Sea sponge Carteriospongia foliascens. Phylogenomic analysis revealed a high dissimilarity between SH4 and free-living cyanobacterial strains. Essential functions, such as photosynthesis, the citric acid cycle, and DNA replication, were detected in SH4. Eukaryoticlike domains that play important roles in sponge-symbiont interactions were identified exclusively in the symbiont. However, SH4 could not biosynthesize methionine and polyamines and had lost partial genes encoding low-molecular-weight peptides of the photosynthesis complex, antioxidant enzymes, DNA repair enzymes, and proteins involved in resistance to environmental toxins and in biosynthesis of capsular and extracellular polysaccharides. These genetic modifications imply that "Ca. Synechococcus spongiarum" SH4 represents a low-light-adapted cyanobacterial symbiont and has undergone genome streamlining to adapt to the sponge's mild intercellular environment. 2014 Gao et al.

A Novel Extracellular Gut Symbiont in the Marine Worm Priapulus caudatus (Priapulida) Reveals an Alphaproteobacterial Symbiont Clade of the Ecdysozoa.

Science.gov (United States)

Kroer, Paul; Kjeldsen, Kasper U; Nyengaard, Jens R; Schramm, Andreas; Funch, Peter

2016-01-01

Priapulus caudatus (phylum Priapulida) is a benthic marine predatory worm with a cosmopolitan distribution. In its digestive tract we detected symbiotic bacteria that were consistently present in specimens collected over 8 years from three sites at the Swedish west coast. Based on their 16S rRNA gene sequence, these symbionts comprise a novel genus of the order Rickettsiales (Alphaproteobacteria). Electron microscopy and fluorescence in situ hybridization (FISH) identified them as extracellular, elongate bacteria closely associated with the microvilli, for which we propose the name "Candidatus Tenuibacter priapulorum". Within Rickettsiales, they form a phylogenetically well-defined, family-level clade with uncultured symbionts of marine, terrestrial, and freshwater arthropods. Cand. Tenuibacter priapulorum expands the host range of this candidate family from Arthropoda to the entire Ecdysozoa, which may indicate an evolutionary adaptation of this bacterial group to the microvilli-lined guts of the Ecdysozoa.

Restriction Fragment Length Polymorphism Analysis Reveals High Levels of Genetic Divergence Among the Light Organ Symbionts of Flashlight Fish.

Science.gov (United States)

Wolfe, C J; Haygood, M G

1991-08-01

Restriction fragment length polymorphisms within the lux and 16S ribosomal RNA gene regions were used to compare unculturable bacterial light organ symbionts of several anomalopid fish species. The method of Nei and Li (1979) was used to calculate phylogenetic distance from the patterns of restriction fragment lengths of the luxA and 16S rRNA regions. Phylogenetic trees constructed from each distance matrix (luxA and 16S rDNA data) have similar branching orders. The levels of divergence among the symbionts, relative to other culturable luminous bacteria, suggests that the symbionts differ at the level of species among host fish genera. Symbiont relatedness and host geographic location do not seem to be correlated, and the symbionts do not appear to be strains of common, free-living, luminous bacteria. In addition, the small number of hybridizing fragments within the 16S rRNA region of the symbionts, compared with that of the free-living species, suggests a decrease in copy number of rRNA operons relative to free-living species. At this level of investigation, the symbiont phylogeny is consistent with the proposed phylogeny of the host fish family and suggests that each symbiont strain coevolved with its host fish species.

Variability of the planktonic foraminifera community across the Eocene/Oligocene boundary, Fuente Caldera Section, Baetic Ranges (Spain)

Science.gov (United States)

Legarda-Lisarri, A.

2013-12-01

During the Eocene/Oligocene transition, in a massive extinction event that took place about 33.7 million years ago, the current high resolution study analyzes qualitatively and quantitatively the community structure of the planktonic foraminifera that were preserved in the hemipelagic sediments of the Tethys Sea. The sampled section of the Fuente Caldera column, located in the Baetic mountain ranges, spans a register of 396,551.7 years. Based in the identification of 27 species, that belong to 13 genera and 2 families of foraminifera, there have been found three biozones of Gonzalvo Zonation (Gonzalvo, 2002) in the studied stratigraphic interval: Turborotalia cocoaensis and Cribrohantkenina lazzarii Biozones (Rupelian), and Paragloborotalia increbescens (Priabonian). The planktonic foraminifera associations variability patterns are defined by paleoecologic indexes (diversity index, high and low latitude species index and planktonic and benthic foraminifera index), by geochemical proxies: δ18O and δ13C and by 'Q' Mode Factor Analysis. They prove that the deposition environment is outer platform and also, they suggest that the studied area in the Tethys Sea underwent many thermal pulses, during which some species extinct or appear. In the first extinction event the species Turborotalia cocoaensis and Turborotalia cunialensis became extinct. In the second one, Hantkenina alabamensis, Hantkenina brevispina, Cribrohantkenina lazzarii and Pseudohastigerina micra became extinct while a succession occured; Globigerina officinalis, Globoturborotalita anguliofficinalis and Tenuitellinata angustiumbilicata appeared. The cooling event that finished in the Lower Oligocene was the biggest of these pulses, which was extremely abrupt and corresponds to the Oi-1 event that was described by Miller (Miller, 1991). All this evidences that the planktonic foraminifera extinction in the Upper Eocene was a gradual and fast event, what is supported by the Factor Analysis application. Key

Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians

KAUST Repository

Wolfowicz, Iliona

2016-09-01

Symbiosis, defined as the persistent association between two distinct species, is an evolutionary and ecologically critical phenomenon facilitating survival of both partners in diverse habitats. The biodiversity of coral reef ecosystems depends on a functional symbiosis with photosynthetic dinoflagellates of the highly diverse genus Symbiodinium, which reside in coral host cells and continuously support their nutrition. The mechanisms underlying symbiont selection to establish a stable endosymbiosis in non-symbiotic juvenile corals are unclear. Here we show for the first time that symbiont selection patterns for larvae of two Acropora coral species and the model anemone Aiptasia are similar under controlled conditions. We find that Aiptasia larvae distinguish between compatible and incompatible symbionts during uptake into the gastric cavity and phagocytosis. Using RNA-Seq, we identify a set of candidate genes potentially involved in symbiosis establishment. Together, our data complement existing molecular resources to mechanistically dissect symbiont phagocytosis in cnidarians under controlled conditions, thereby strengthening the role of Aiptasia larvae as a powerful model for cnidarian endosymbiosis establishment.

Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians

KAUST Repository

Wolfowicz, Iliona; Baumgarten, Sebastian; Voss, Philipp A.; Hambleton, Elizabeth A.; Voolstra, Christian R.; Hatta, Masayuki; Guse, Annika

2016-01-01

Symbiosis, defined as the persistent association between two distinct species, is an evolutionary and ecologically critical phenomenon facilitating survival of both partners in diverse habitats. The biodiversity of coral reef ecosystems depends on a functional symbiosis with photosynthetic dinoflagellates of the highly diverse genus Symbiodinium, which reside in coral host cells and continuously support their nutrition. The mechanisms underlying symbiont selection to establish a stable endosymbiosis in non-symbiotic juvenile corals are unclear. Here we show for the first time that symbiont selection patterns for larvae of two Acropora coral species and the model anemone Aiptasia are similar under controlled conditions. We find that Aiptasia larvae distinguish between compatible and incompatible symbionts during uptake into the gastric cavity and phagocytosis. Using RNA-Seq, we identify a set of candidate genes potentially involved in symbiosis establishment. Together, our data complement existing molecular resources to mechanistically dissect symbiont phagocytosis in cnidarians under controlled conditions, thereby strengthening the role of Aiptasia larvae as a powerful model for cnidarian endosymbiosis establishment.

Plant-mediated interspecific horizontal transmission of an intracellular symbiont in insects.

Science.gov (United States)

Gonella, Elena; Pajoro, Massimo; Marzorati, Massimo; Crotti, Elena; Mandrioli, Mauro; Pontini, Marianna; Bulgari, Daniela; Negri, Ilaria; Sacchi, Luciano; Chouaia, Bessem; Daffonchio, Daniele; Alma, Alberto

2015-11-13

Intracellular reproductive manipulators, such as Candidatus Cardinium and Wolbachia are vertically transmitted to progeny but rarely show co-speciation with the host. In sap-feeding insects, plant tissues have been proposed as alternative horizontal routes of interspecific transmission, but experimental evidence is limited. Here we report results from experiments that show that Cardinium is horizontally transmitted between different phloem sap-feeding insect species through plants. Quantitative PCR and in situ hybridization experiments indicated that the leafhopper Scaphoideus titanus releases Cardinium from its salivary glands during feeding on both artificial media and grapevine leaves. Successional time-course feeding experiments with S. titanus initially fed sugar solutions or small areas of grapevine leaves followed by feeding by the phytoplasma vector Macrosteles quadripunctulatus or the grapevine feeder Empoasca vitis revealed that the symbionts were transmitted to both species. Explaining interspecific horizontal transmission through plants improves our understanding of how symbionts spread, their lifestyle and the symbiont-host intermixed evolutionary pattern.

Plant-mediated interspecific horizontal transmission of an intracellular symbiont in insects

KAUST Repository

Gonella, Elena

2015-11-13

Intracellular reproductive manipulators, such as Candidatus Cardinium and Wolbachia are vertically transmitted to progeny but rarely show co-speciation with the host. In sap-feeding insects, plant tissues have been proposed as alternative horizontal routes of interspecific transmission, but experimental evidence is limited. Here we report results from experiments that show that Cardinium is horizontally transmitted between different phloem sap-feeding insect species through plants. Quantitative PCR and in situ hybridization experiments indicated that the leafhopper Scaphoideus titanus releases Cardinium from its salivary glands during feeding on both artificial media and grapevine leaves. Successional time-course feeding experiments with S. titanus initially fed sugar solutions or small areas of grapevine leaves followed by feeding by the phytoplasma vector Macrosteles quadripunctulatus or the grapevine feeder Empoasca vitis revealed that the symbionts were transmitted to both species. Explaining interspecific horizontal transmission through plants improves our understanding of how symbionts spread, their lifestyle and the symbiont-host intermixed evolutionary pattern.

Time-response of cultured deep-sea benthic foraminifera to different algal diets

Science.gov (United States)

Heinz, P.; Hemleben, Ch; Kitazato, H.

2002-03-01

The vertical distribution of benthic foraminifera in the surface sediment is influenced by environmental factors, mainly by food and oxygen supply. An experiment of three different time series was performed to investigate the response of deep-sea benthic foraminifera to simulated phytodetritus pulses under stable oxygen concentrations. Each series was fed constantly with one distinct algal species in equivalent amounts. The temporal reactions of the benthic foraminifera with regard to the vertical distribution in the sediment, the total number, and the species composition were observed and compared within the three series. Additionally, oxygen contents and bacterial cell numbers were measured to ensure that these factors were invariable and did not influence foraminiferal communities. The addition of algae leads to higher population densities 21 days after food was added. Higher numbers of individuals were probably caused by higher organic levels, which in turn induced reproduction. A stronger response is found after feeding with Amphiprora sp. and Pyramimonas sp., compared to Dunaliella tertiolecta. At a constant high oxygen supply, no migration to upper layers was observed after food addition, and more individuals were found in deeper layers. The laboratory results thus agree with the predictions of the TROX-model. An epifaunal microhabitat preference was shown for Adercotryma glomerata. Hippocrepina sp. was spread over the entire sediment depth with a shallow infaunal maximum. Melonis barleeanum preferred a deeper infaunal habitat. Bacterial cell concentrations were stable during the laboratory experiments and showed no significant response to higher organic fluxes.

Differential responses of the coral host and their algal symbiont to thermal stress.

Directory of Open Access Journals (Sweden)

William Leggat

Full Text Available The success of any symbiosis under stress conditions is dependent upon the responses of both partners to that stress. The coral symbiosis is particularly susceptible to small increases of temperature above the long term summer maxima, which leads to the phenomenon known as coral bleaching, where the intracellular dinoflagellate symbionts are expelled. Here we for the first time used quantitative PCR to simultaneously examine the gene expression response of orthologs of the coral Acropora aspera and their dinoflagellate symbiont Symbiodinium. During an experimental bleaching event significant up-regulation of genes involved in stress response (HSP90 and HSP70 and carbon metabolism (glyceraldehyde-3-phosphate dehydrogenase, α-ketoglutarate dehydrogenase, glycogen synthase and glycogen phosphorylase from the coral host were observed. In contrast in the symbiont, HSP90 expression decreased, while HSP70 levels were increased on only one day, and only the α-ketoglutarate dehydrogenase expression levels were found to increase. In addition the changes seen in expression patterns of the coral host were much larger, up to 10.5 fold, compared to the symbiont response, which in all cases was less than 2-fold. This targeted study of the expression of key metabolic and stress genes demonstrates that the response of the coral and their symbiont vary significantly, also a response in the host transcriptome was observed prior to what has previously been thought to be the temperatures at which thermal stress events occur.

Foraminifera as climatic indicators in the sediments of Western Indian continental shelf

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.

to tell, which can be unravelled by careful analysis and interpretation. Foraminifera are primarily of two kinds-planktonic and benthonic-each having a significant role to play. Therefore, in the study of a sample, the planktonic and benthonic populations...

A novel extracellular gut symbiont in the marine worm Priapulus caudatus (Priapulida reveals an alphaproteobacterial symbiont clade of the Ecdysozoa

Directory of Open Access Journals (Sweden)

Paul eKroer

2016-04-01

Full Text Available Priapulus caudatus (phylum Priapulida is a benthic marine predatory worm with a cosmopolitan distribution. In its digestive tract we detected symbiotic bacteria that were consistently present in specimens collected over eight years from three sites at the Swedish west coast. Based on their 16S rRNA gene sequence, these symbionts comprise a novel genus of the order Rickettsiales (Alphaproteobacteria. Electron microscopy and fluorescence in situ hybridization (FISH identified them as extracellular, elongate bacteria closely associated with the microvilli, for which we propose the name ‘Candidatus Tenuibacter priapulorum’. Within Rickettsiales, they form a phylogenetically well-defined, family-level clade with uncultured symbionts of marine, terrestrial, and freshwater arthropods. Cand. Tenuibacter priapulorum expands the host range of this candidate family from Arthropoda to the entire Ecdysozoa, which may indicate an evolutionary adaptation of this bacterial group to the microvilli-lined guts of the Ecdysozoa.

A transgressive Santonian-Campanian boundary sequence revisited - High resolution planktonic and benthic foraminifera stratigraphy of the Schattau section, Northern Calcareous Alps.

Science.gov (United States)

Wolfgring, Erik; Wagreich, Michael; Summesberger, Herbert; Kroh, Andreas

2016-04-01

The Schattau section is part of the Austrian Gosau Group, Northern Calcareous Alps. We record a Santonian to early Campanian transgressive sequence. Previous investigations already provide a biostratigraphic framework; a multidisciplinary study to reveal the local stratigraphy and palaeoenvironmental properties: Planktonic foraminifera, calcareous nannoplankton, ammonite, echinoid and crinoid biostratigraphy data suggest a Santonian to earliest Campanian age for this section (see Wagreich et al., 2009). This work aims at a high resolution assessment of foraminiferal assemblages recorded from a time interval that has undergone significant palaeoenvironmental changes. The Santonian Hochmoos Formation, with the Sandkalkbank Member representing it's topmost subunit, is overlain by the Santonian to Campanian Bibereck Formation. While The Hochmoos Formation records a shallowing succession that finds the Sandkalkbank Member (representing very shallow conditions, sometimes sub aerial exposure) at its top. The overlying Bibereck Formation records a distinct deepening trend displaying increasingly marine, neritic to outer neritic conditions. The stratigraphically older subunits of the Schattau sections are characterised by abundant larger benthic foraminifera (Nummofallotia cretacea), miliolid foraminifera (Quinqueloculina spp, Spiroloculina fassistomata) as well as rotaliid foraminifera (Hoeglundia spp., Gavellina spp.). The Sandkalkbank member marks the end of the shallow water sequence recorded from foraminifera assemblages at the Schattau section. Up section communities are characterised by increasing share of planktonic foraminifera. Biostratigraphic marker fossils like Dicarinella asymetrica and Sigalia sp. (decoratissima?) were identified and indicate a Santonian age for the Bibereck Formation. The appearance of Globotruncanita elevata and disappearance of D. asymetrica and Sigalia sp. Suggests an early Campanian age for the topmost part of the Schattau section

Candidatus Sodalis melophagi sp. nov.: phylogenetically independent comparative model to the tsetse fly symbiont Sodalis glossinidius.

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Tomáš Chrudimský

Full Text Available Bacteria of the genus Sodalis live in symbiosis with various groups of insects. The best known member of this group, a secondary symbiont of tsetse flies Sodalis glossinidius, has become one of the most important models in investigating establishment and evolution of insect-bacteria symbiosis. It represents a bacterium in the early/intermediate state of the transition towards symbiosis, which allows for exploring such interesting topics as: usage of secretory systems for entering the host cell, tempo of the genome modification, and metabolic interaction with a coexisting primary symbiont. In this study, we describe a new Sodalis species which could provide a useful comparative model to the tsetse symbiont. It lives in association with Melophagus ovinus, an insect related to tsetse flies, and resembles S. glossinidius in several important traits. Similar to S. glossinidius, it cohabits the host with another symbiotic bacterium, the bacteriome-harbored primary symbiont of the genus Arsenophonus. As a typical secondary symbiont, Candidatus Sodalis melophagi infects various host tissues, including bacteriome. We provide basic morphological and molecular characteristics of the symbiont and show that these traits also correspond to the early/intermediate state of the evolution towards symbiosis. Particularly, we demonstrate the ability of the bacterium to live in insect cell culture as well as in cell-free medium. We also provide basic characteristics of type three secretion system and using three reference sequences (16 S rDNA, groEL and spaPQR region we show that the bacterium branched within the genus Sodalis, but originated independently of the two previously described symbionts of hippoboscoids. We propose the name Candidatus Sodalis melophagi for this new bacterium.

Candidatus Sodalis melophagi sp. nov.: phylogenetically independent comparative model to the tsetse fly symbiont Sodalis glossinidius.

Science.gov (United States)

Chrudimský, Tomáš; Husník, Filip; Nováková, Eva; Hypša, Václav

2012-01-01

Bacteria of the genus Sodalis live in symbiosis with various groups of insects. The best known member of this group, a secondary symbiont of tsetse flies Sodalis glossinidius, has become one of the most important models in investigating establishment and evolution of insect-bacteria symbiosis. It represents a bacterium in the early/intermediate state of the transition towards symbiosis, which allows for exploring such interesting topics as: usage of secretory systems for entering the host cell, tempo of the genome modification, and metabolic interaction with a coexisting primary symbiont. In this study, we describe a new Sodalis species which could provide a useful comparative model to the tsetse symbiont. It lives in association with Melophagus ovinus, an insect related to tsetse flies, and resembles S. glossinidius in several important traits. Similar to S. glossinidius, it cohabits the host with another symbiotic bacterium, the bacteriome-harbored primary symbiont of the genus Arsenophonus. As a typical secondary symbiont, Candidatus Sodalis melophagi infects various host tissues, including bacteriome. We provide basic morphological and molecular characteristics of the symbiont and show that these traits also correspond to the early/intermediate state of the evolution towards symbiosis. Particularly, we demonstrate the ability of the bacterium to live in insect cell culture as well as in cell-free medium. We also provide basic characteristics of type three secretion system and using three reference sequences (16 S rDNA, groEL and spaPQR region) we show that the bacterium branched within the genus Sodalis, but originated independently of the two previously described symbionts of hippoboscoids. We propose the name Candidatus Sodalis melophagi for this new bacterium.

Selandian-Thanetian larger foraminifera from the lower Jafnayn Formation in the Sayq area (eastern Oman Mountains)

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Serra-Kiel, J.; Vicedo, V.; Razin, P.; Grelaud, C.

2016-07-01

The larger foraminifera of the lower part of the Jafnayn Formation outcropping in the Wadi Sayq, in the Paleocene series of the eastern Oman Mountains, have been studied and described in detail. The analysis have allowed us to develop a detailed systematic description of each taxa, constraining their biostratigraphic distribution and defining the associated foraminifera assemblages. The taxonomic study has permitted us to identify each morphotype precisely and describe three new taxa, namely, Ercumentina sayqensis n. gen. n. sp. Lacazinella rogeri n. sp. and Globoreticulinidae new family. The first assemblage is characterized by the presence of Coskinon sp., Dictyoconus cf. turriculus Hottinger and Drobne, Anatoliella ozalpiensis Sirel, Ercumentina sayqensis n. gen. n. sp. SerraKiel and Vicedo, Lacazinella rogeri n. sp. Serra-Kiel and Vicedo, Mandanella cf. flabelliformis Rahaghi, Azzarolina daviesi (Henson), Lockhartia retiata Sander, Dictyokathina simplex Smout and Miscellanites globularis (Rahaghi). The second assemblage is constituted by the forms Pseudofallotella persica (Hottinger and Drobne), Dictyoconus cf. turriculus Hottinger and Drobne, Lacazinella rogeri n. sp. Serra-Kiel and Vicedo, Azzarolina daviesi (Henson), Keramosphera? cf. iranica Rahaghi, Lockhartia haimei (Davies), Lockhartia retiata Sander, Sakesaria trichilata Sander, Kathina delseota Smout, Elazigina harabekayisensis Sirel, Daviesina khatiyahi Smout, and Miscellanea juliettae Leppig. The first assemblage can be considered to belong to the Shallow Bentic Zone SBZ2 (early Selandian age), and the second assemblage to the SBZ3 (late Selandian-early Thanetian age).This paper shows, for the first time in the Middle East area, a correlation between the Selandian larger foraminifera and planktonic foraminifera biozones. (Author)

Selandian-Thanetian larger foraminifera from the lower Jafnayn Formation in the Sayq area (eastern Oman Mountains)

International Nuclear Information System (INIS)

Serra-Kiel, J.; Vicedo, V.; Razin, P.; Grelaud, C.

2016-01-01

The larger foraminifera of the lower part of the Jafnayn Formation outcropping in the Wadi Sayq, in the Paleocene series of the eastern Oman Mountains, have been studied and described in detail. The analysis have allowed us to develop a detailed systematic description of each taxa, constraining their biostratigraphic distribution and defining the associated foraminifera assemblages. The taxonomic study has permitted us to identify each morphotype precisely and describe three new taxa, namely, Ercumentina sayqensis n. gen. n. sp. Lacazinella rogeri n. sp. and Globoreticulinidae new family. The first assemblage is characterized by the presence of Coskinon sp., Dictyoconus cf. turriculus Hottinger and Drobne, Anatoliella ozalpiensis Sirel, Ercumentina sayqensis n. gen. n. sp. SerraKiel and Vicedo, Lacazinella rogeri n. sp. Serra-Kiel and Vicedo, Mandanella cf. flabelliformis Rahaghi, Azzarolina daviesi (Henson), Lockhartia retiata Sander, Dictyokathina simplex Smout and Miscellanites globularis (Rahaghi). The second assemblage is constituted by the forms Pseudofallotella persica (Hottinger and Drobne), Dictyoconus cf. turriculus Hottinger and Drobne, Lacazinella rogeri n. sp. Serra-Kiel and Vicedo, Azzarolina daviesi (Henson), Keramosphera? cf. iranica Rahaghi, Lockhartia haimei (Davies), Lockhartia retiata Sander, Sakesaria trichilata Sander, Kathina delseota Smout, Elazigina harabekayisensis Sirel, Daviesina khatiyahi Smout, and Miscellanea juliettae Leppig. The first assemblage can be considered to belong to the Shallow Bentic Zone SBZ2 (early Selandian age), and the second assemblage to the SBZ3 (late Selandian-early Thanetian age).This paper shows, for the first time in the Middle East area, a correlation between the Selandian larger foraminifera and planktonic foraminifera biozones. (Author)

Benthic foraminifera distribution in high polluted sediments from Niterói Harbor (Guanabara Bay), Rio de Janeiro, Brazil

OpenAIRE

Claudia G. Vilela; Daniele S. Batista; José A. Batista-Neto; Mirian Crapez; John J. Mcallister

2004-01-01

Dockyards and harbors are recognized as being important locations where sediment-associated pollutants can accumulate, which constitutes an environmental risk to aquatic life due to potential uptake and accumulation of heavy metals in the biota. The aim of this paper is to assess the concentrations and the effects of some heavy metals in the benthic foraminifera assemblage in Niterói Harbor. Low concentrations in the benthic foraminifera as well as the dominance of indicative species such as ...

Environmental Transmission of the Gut Symbiont Burkholderia to Phloem-Feeding Blissus insularis.

Science.gov (United States)

Xu, Yao; Buss, Eileen A; Boucias, Drion G

2016-01-01

The plant-phloem-feeding Blissus insularis possesses specialized midgut crypts, which harbor a dense population of the exocellular bacterial symbiont Burkholderia. Most individual B. insularis harbor a single Burkholderia ribotype in their midgut crypts; however, a diverse Burkholderia community exists within a host population. To understand the mechanism underlying the consistent occurrence of various Burkholderia in B. insularis and their specific association, we investigated potential gut symbiont transmission routes. PCR amplification detected a low titer of Burkholderia in adult reproductive tracts; however, fluorescence in situ hybridization assays failed to produce detectable signals in these tracts. Furthermore, no Burkholderia-specific PCR signals were detected in eggs and neonates, suggesting that it is unlikely that B. insularis prenatally transmits gut symbionts via ovarioles. In rearing experiments, most nymphs reared on St. Augustinegrass treated with cultured Burkholderia harbored the cultured Burkholderia strains. Burkholderia was detected in the untreated host grass of B. insularis, and most nymphs reared on untreated grass harbored a Burkholderia ribotype that was closely related to a plant-associated Burkholderia strain. These findings revealed that B. insularis neonates acquired Burkholderia primarily from the environment (i.e., plants and soils), even though the possibility of acquisition via egg surface cannot be excluded. In addition, our study explains how the diverse Burkholderia symbiont community in B. insularis populations can be maintained.

A novel bacterial symbiont in the nematode Spirocerca lupi

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Gottlieb Yuval

2012-07-01

Full Text Available Abstract Background The parasitic nematode Spirocerca lupi (Spirurida: Thelaziidae, the canine esophageal worm, is the causative agent of spirocercosis, a disease causing morbidity and mortality in dogs. Spirocerca lupi has a complex life cycle, involving an obligatory coleopteran intermediate host (vector, an optional paratenic host, and a definitive canid host. The diagnosis of spirocercosis is challenging, especially in the early disease stages, when adult worms and clinical signs are absent. Thus, alternative approaches are needed to promote early diagnosis. The interaction between nematodes and their bacterial symbionts has recently become a focus of novel treatment regimens for other helminthic diseases. Results Using 16S rDNA-based molecular methods, here we found a novel bacterial symbiont in S. lupi that is closely related to Comamonas species (Brukholderiales: Comamonadaceae of the beta-proteobacteria. Its DNA was detected in eggs, larvae and adult stages of S. lupi. Using fluorescent in situ hybridization technique, we localized Comamonas sp. to the gut epithelial cells of the nematode larvae. Specific PCR enabled the detection of this symbiont's DNA in blood obtained from dogs diagnosed with spirocercosis. Conclusions The discovery of a new Comamonas sp. in S. lupi increase the complexity of the interactions among the organisms involved in this system, and may open innovative approaches for diagnosis and control of spirocercosis in dogs.

The role of symbiont genetic distance and potential adaptability in host preference towards Pseudonocardia symbionts in Acromyrmex leaf-cutting ants

DEFF Research Database (Denmark)

Thomas-Poulsen, Michael; Maynard, Janielle; Roland, Damien L.

2011-01-01

Fungus-growing ants display symbiont preference in behavioral assays, both towards the fungus they cultivate for food and Actinobacteria they maintain on their cuticle for antibiotic production against parasites. These Actinobacteria, genus Pseudonocardia Henssen (Pseudonocardiacea: Actinomycetales...

Planktic foraminifera form their shells via metastable carbonate phases

OpenAIRE

Jacob, D. E.; Wirth, R.; Agbaje, O. B. A.; Branson, O.; Eggins, S. M.

2017-01-01

The calcium carbonate shells of planktic foraminifera provide our most valuable geochemical archive of ocean surface conditions and climate spanning the last 100 million years, and play an important role in the ocean carbon cycle. These shells are preserved in marine sediments as calcite, the stable polymorph of calcium carbonate. Here, we show that shells of living planktic foraminifers Orbulina universa and Neogloboquadrina dutertrei originally form from the unstable calcium carbonate polym...

Meta-analysis reveals host-dependent nitrogen recycling as a mechanism of symbiont control in Aiptasia

KAUST Repository

Cui, Guoxin

2018-02-22

The metabolic symbiosis with photosynthetic algae of the genus Symbiodinium allows corals to thrive in the oligotrophic environments of tropical seas. Many aspects of this relationship have been investigated using transcriptomic analyses in the emerging model organism Aiptasia. However, previous studies identified thousands of putatively symbiosis-related genes, making it difficult to disentangle symbiosis-induced responses from undesired experimental parameters. Using a meta-analysis approach, we identified a core set of 731 high-confidence symbiosis-associated genes that reveal host-dependent recycling of waste ammonium and amino acid synthesis as central processes in this relationship. Combining transcriptomic and metabolomic analyses, we show that symbiont-derived carbon enables host recycling of ammonium into nonessential amino acids. We propose that this provides a regulatory mechanism to control symbiont growth through a carbon-dependent negative feedback of nitrogen availability to the symbiont. The dependence of this mechanism on symbiont-derived carbon highlights the susceptibility of this symbiosis to changes in carbon translocation, as imposed by environmental stress.

Infectious speciation revisited: impact of symbiont-depletion on female fitness and mating behavior of Drosophila paulistorum.

Directory of Open Access Journals (Sweden)

Wolfgang J Miller

2010-12-01

Full Text Available The neotropical Drosophila paulistorum superspecies, consisting of at least six geographically overlapping but reproductively isolated semispecies, has been the object of extensive research since at least 1955, when it was initially trapped mid-evolution in flagrant statu nascendi. In this classic system females express strong premating isolation patterns against mates belonging to any other semispecies, and yet uncharacterized microbial reproductive tract symbionts were described triggering hybrid inviability and male sterility. Based on theoretical models and limited experimental data, prime candidates fostering symbiont-driven speciation in arthropods are intracellular bacteria belonging to the genus Wolbachia. They are maternally inherited symbionts of many arthropods capable of manipulating host reproductive biology for their own benefits. However, it is an ongoing debate as to whether or not reproductive symbionts are capable of driving host speciation in nature and if so, to what extent. Here we have reevaluated this classic case of infectious speciation by means of present day molecular approaches and artificial symbiont depletion experiments. We have isolated the α-proteobacteria Wolbachia as the maternally transmitted core endosymbionts of all D. paulistorum semispecies that have coevolved towards obligate mutualism with their respective native hosts. In hybrids, however, these mutualists transform into pathogens by overreplication causing embryonic inviability and male sterility. We show that experimental reduction in native Wolbachia titer causes alterations in sex ratio, fecundity, and mate discrimination. Our results indicate that formerly designated Mycoplasma-like organisms are most likely Wolbachia that have evolved by becoming essential mutualistic symbionts in their respective natural hosts; they have the potential to trigger pre- and postmating isolation. Furthermore, in light of our new findings, we revisit the concept of

Immunochemical localization of ribulose-1,5-bisphosphate carboxylase in the symbiont-containing gills of Solemya velum (Bivalvia: Mollusca).

Science.gov (United States)

Cavanaugh, C M; Abbott, M S; Veenhuis, M

1988-10-01

The distribution of the Calvin cycle enzyme ribulose-1,5-bisphosphate carboxylase (RbuP(2)Case; EC 4.1.1.39) was examined by using two immunological methods in tissues of Solemya velum, an Atlantic coast bivalve containing putative chemoautotrophic symbionts. Antibodies elicited by the purified large subunit of RbuP(2)Case from tobacco (Nicotiana tabacum) cross-reacted on immunoblots with a protein of similar molecular mass occurring in extracts of the symbiont-containing gill tissue of S. velum. No cross-reactivity was detected in symbiont-free tissue extracts. The antiserum also cross-reacted in immunoblots with proteins of Thiobacillus neapolitanus, a free-living sulfuroxidizing chemoautotroph whose RbuP(2)Case has been well characterized. In protein A-gold immunoelectron microscopy studies, this antiserum consistently labeled the symbionts but not surrounding host gill tissue, indicating that the symbionts are responsible for the RbuP(2)Case activity.

The Calyptogena magnifica chemoautotrophic symbiont genome

Energy Technology Data Exchange (ETDEWEB)

Newton, I.L.; Woyke, T.; Auchtung, T.A.; Dilly, G.F.; Dutton,R.J.; Fisher, M.C.; Fontanez, K.M.; Lau, E.; Stewart, F.J.; Richardson,P.M.; Barry, K.W.; Saunders, E.; Detter, J.C.; Wu, D.; Eisen, J.A.; Cavanaugh, C.M.

2007-03-01

Chemoautotrophic endosymbionts are the metabolic cornerstone of hydrothermal vent communities, providing invertebrate hosts with nearly all of their nutrition. The Calyptogena magnifica (Bivalvia: Vesicomyidae) symbiont, Candidatus Ruthia magnifica, is the first intracellular sulfur-oxidizing endosymbiont to have its genome sequenced, revealing a suite of metabolic capabilities. The genome encodes major chemoautotrophic pathways as well as pathways for biosynthesis of vitamins, cofactors, and all 20 amino acids required by the clam.

Ecology and distribution of recent planktonic foraminifera in eastern part of Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Rao, K.K.; Jayalakshmy, K.V.; Kutty, M.K.

Thirty species of living planktonic foraminifera have been studied from 97 plankton tows collected from the eastern Arabian Sea with an accent on their ecological and distributional aspects. Species density is higher with less dominance in the deep...

Mixed infections may promote diversification of mutualistic symbionts: why are there ineffective rhizobia?

Science.gov (United States)

Friesen, M L; Mathias, A

2010-02-01

While strategy variation is a key feature of symbiotic mutualisms, little work focuses on the origin of this diversity. Rhizobia strategies range from mutualistic nitrogen fixers to parasitic nonfixers that hoard plant resources to increase their own survival in soil. Host plants reward beneficial rhizobia with higher nodule growth rates, generating a trade-off between reproduction in nodules and subsequent survival in soil. However, hosts might not discriminate between strains in mixed infections, allowing nonfixing strains to escape sanctions. We construct an adaptive dynamics model of symbiotic nitrogen-fixation and find general situations where symbionts undergo adaptive diversification, but in most situations complete nonfixers do not evolve. Social conflict in mixed infections when symbionts face a survival-reproduction trade-off can drive the origin of some coexisting symbiont strategies, where less mutualistic strains exploit benefits generated by better mutualists.

Sediment traps as a new tool for estimation of longevity of planktonic foraminifera

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.

Sediment trap technique provides time series data of sinking particles (faunal and sediment) from surface to bottom of the sea. Besides many other applications, data can also be used to estimate life span of planktonic foraminifera. Based on rearing...

Planktonic foraminifera from a quaternary deep sea core from the southern Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Naidu, P.D.; Rao, P.S.; Pattan, J.N.

An investigation on planktonic foraminifera and calcium carbonate content of a box core collected at a depth of 2556 m from the southern part of the Arabian sea indicates faunal changes depicting Quaternary climatic fluctuations. Based on the study...

Living planktonic foraminifera during the late summer monsoon period in the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Guptha, M.V.S.; Mohan, R.; Muralinath, A.S.

with deepening of the mixed layer, since this species preferentially dwells in nutrient-rich upwelling waters. The population density of planktonic foraminifera ranges between 31 and 185 specimens per 10@u-3@@m@u3@@. The low absolute numbers of planktonic...

Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages.

Science.gov (United States)

Morard, Raphaël; Garet-Delmas, Marie-José; Mahé, Frédéric; Romac, Sarah; Poulain, Julie; Kucera, Michal; de Vargas, Colomban

2018-02-07

Since the advent of DNA metabarcoding surveys, the planktonic realm is considered a treasure trove of diversity, inhabited by a small number of abundant taxa, and a hugely diverse and taxonomically uncharacterized consortium of rare species. Here we assess if the apparent underestimation of plankton diversity applies universally. We target planktonic foraminifera, a group of protists whose known morphological diversity is limited, taxonomically resolved and linked to ribosomal DNA barcodes. We generated a pyrosequencing dataset of ~100,000 partial 18S rRNA foraminiferal sequences from 32 size fractioned photic-zone plankton samples collected at 8 stations in the Indian and Atlantic Oceans during the Tara Oceans expedition (2009-2012). We identified 69 genetic types belonging to 41 morphotaxa in our metabarcoding dataset. The diversity saturated at local and regional scale as well as in the three size fractions and the two depths sampled indicating that the diversity of foraminifera is modest and finite. The large majority of the newly discovered lineages occur in the small size fraction, neglected by classical taxonomy. These unknown lineages dominate the bulk [>0.8 µm] size fraction, implying that a considerable part of the planktonic foraminifera community biomass has its origin in unknown lineages.

Burkholderia Species Are the Most Common and Preferred Nodulating Symbionts of the Piptadenia Group (Tribe Mimoseae)

Science.gov (United States)

Bournaud, Caroline; de Faria, Sergio Miana; dos Santos, José Miguel Ferreira; Tisseyre, Pierre; Silva, Michele; Chaintreuil, Clémence; Gross, Eduardo; James, Euan K.; Prin, Yves; Moulin, Lionel

2013-01-01

Burkholderia legume symbionts (also called α-rhizobia) are ancient in origin and are the main nitrogen-fixing symbionts of species belonging to the large genus Mimosa in Brazil. We investigated the extent of the affinity between Burkholderia and species in the tribe Mimoseae by studying symbionts of the genera Piptadenia (P.), Parapiptadenia (Pp.), Pseudopiptadenia (Ps.), Pityrocarpa (Py.), Anadenanthera (A.) and Microlobius (Mi.), all of which are native to Brazil and are phylogenetically close to Mimosa, and which together with Mimosa comprise the “Piptadenia group”. We characterized 196 strains sampled from 18 species from 17 locations in Brazil using two neutral markers and two symbiotic genes in order to assess their species affiliations and the evolution of their symbiosis genes. We found that Burkholderia are common and highly diversified symbionts of species in the Piptadenia group, comprising nine Burkholderia species, of which three are new ones and one was never reported as symbiotic (B. phenoliruptrix). However, α-rhizobia were also detected and were occasionally dominant on a few species. A strong sampling site effect on the rhizobial nature of symbionts was detected, with the symbiont pattern of the same legume species changing drastically from location to location, even switching from β to α-rhizobia. Coinoculation assays showed a strong affinity of all the Piptadenia group species towards Burkholderia genotypes, with the exception of Mi. foetidus. Phylogenetic analyses of neutral and symbiotic markers showed that symbiosis genes in Burkholderia from the Piptadenia group have evolved mainly through vertical transfer, but also by horizontal transfer in two species. PMID:23691052

Diversity, distribution, and morphological deformities among living Foraminifera in hypersaline Salwa Bay, Saudi Arabia

Science.gov (United States)

Olalekan Amao, Abduljamiu; Kaminski, Michael

2016-04-01

The Arabian Gulf is considered a naturally stressed environment due to extremes of salinity and summer temperatures. Anthropogenic influences such as rapid urbanisation projects, maritime transport, and large numbers of desalination plants and oil-related activities compounds the problem. Foraminifera are known to be resilient under such stressful conditions. The purpose of our study is to document the foraminiferal diversity and abundance in the hypersaline Salwa Bay area, near the Saudi Arabian-Qatar Border. We expect the foraminiferal fauna in Salwa Bay to be adapted to extremes in salinity, and we wish to document any species that might be endemic or uniquely adapted to the area. Shannon-Wiener index, relative abundance, species richness, and the percentage of morphological deformities were determined for samples collected from the bay. Salwa Bay is the most saline extension of the Arabian Gulf with high salinity, water temperature and evaporation rate, which is attributed to slow flushing rates, coral reef barriers and higher residency time of the water. Environmental parameters measured at the time of collection were depth (10-110 cm), salinity (52.6-53.0) total dissolved solids (48.8-49.4 g/l), and temperature (27-27.6°C). The foraminiferal assemblages in Salwa Bay are dominated by porcelaneous foraminifera, which include Peneroplis pertusus, Peneroplis planatus, Coscinospira hemprichii and Coscinospira acicularis. The most common species across the sampled transect is Peneroplis pertusus. Hyaline species were also found, but agglutinated foraminifera are absent. Diversity in Salwa Bay is lower compared with localities that have "normal" salinity, and many of the foraminifera display conspicuous morphological deformities. Approximately 55% of the assemblage exhibits mild to severe deformities such as fusion of two adults or double tests, protuberance on the spiral side, abnormal arrangement of the chambers, abnormal shape of the proloculus and modification

Application of individual foraminifera Mg/Ca and δ18O analyses for paleoceanographic reconstructions in the Bay of Bengal and other active depositional environments

Science.gov (United States)

Fritz-Endres, T.; Dekens, P.; Fehrenbacher, J. S.; Spero, H. J.; Stine, A.

2017-12-01

Paleoceanographic research traditionally focuses on regions where sediment deposition is minimally affected by transport. However, sediment fans near tectonically active regions provide an opportunity to link oceanographic climate to terrestrial processes. Sediment cores recovered during IODP Expedition 354 in the Bay of Bengal include hemipelagic sections that record the history of tectonic uplift and the development of the Indian Monsoon through the last 10 Ma. Although these cores provide a unique opportunity to link marine and terrestrial climate, the complex depositional environment requires that the source of foraminifera is carefully considered before using these proxies to reconstruct oceanographic conditions. Foraminifera in Bengal Fan sediments may have been transported via turbidity currents from the northern Bay of Bengal, where the seasonal variability of SST and SSS is larger compared to the southern Bay of Bengal. We measured single Globigerinoides sacculifer Mg/Ca and δ18O from mudline samples of IODP Site U1454 (8.4°N, 85.5°E, 3721 m water depth) near the modern active channel and Site U1449 (8.4°N, 88.7°E, 3653 m water depth) far from channel activity. We compare these sites to single G. sacculifer from the core-top sample of Site 342KL (20.6°N, 90.1°E, 1256 m water depth) located on the continental shelf. Each foraminifera lives 2-4 weeks and the distribution of 60 to 80 data points reflects the seasonal range of SST and SSS at the location where the foraminifera calcified. Measurements in foraminifera from Site U1449 (away from active channel) are statistically different from the site in the northern Bay of Bengal and more consistent with local conditions. Conversely, foraminifera from the site near the active channel reflect a combined signal of local conditions recorded from the site far from channel activity and those recorded from the continental shelf. This suggests a portion of foraminifera from the active channel site have been

Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula

KAUST Repository

Ziegler, Maren; Arif, Chatchanit; Burt, John A.; Dobretsov, Sergey; Roder, Cornelia; Lajeunesse, Todd C.; Voolstra, Christian R.

2017-01-01

Aim: Coral reefs rely on the symbiosis between scleractinian corals and intracellular, photosynthetic dinoflagellates of the genus Symbiodinium making the assessment of symbiont diversity critical to our understanding of ecological resilience of these ecosystems. This study characterizes Symbiodinium diversity around the Arabian Peninsula, which contains some of the most thermally diverse and understudied reefs on Earth. Location: Shallow water coral reefs throughout the Red Sea (RS), Sea of Oman (SO), and Persian/Arabian Gulf (PAG). Methods: Next-generation sequencing of the ITS2 marker gene was used to assess Symbiodinium community composition and diversity comprising 892 samples from 46 hard and soft coral genera. Results: Corals were associated with a large diversity of Symbiodinium, which usually consisted of one or two prevalent symbiont types and many types at low abundance. Symbiodinium communities were strongly structured according to geographical region and to a lesser extent by coral host identity. Overall symbiont communities were composed primarily of species from clade A and C in the RS, clade A, C, and D in the SO, and clade C and D in the PAG, representing a gradual shift from C- to D-dominated coral hosts. The analysis of symbiont diversity in an Operational Taxonomic Unit (OTU)-based framework allowed the identification of differences in symbiont taxon richness over geographical regions and host genera. Main conclusions: Our study represents a comprehensive overview over biogeography and molecular diversity of Symbiodinium in the Arabian Seas, where coral reefs thrive in one of the most extreme environmental settings on the planet. As such our data will serve as a baseline for further exploration into the effects of environmental change on host-symbiont pairings and the identification and ecological significance of Symbiodinium types from regions already experiencing 'Future Ocean' conditions.

Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula

KAUST Repository

Ziegler, Maren

2017-01-02

Aim: Coral reefs rely on the symbiosis between scleractinian corals and intracellular, photosynthetic dinoflagellates of the genus Symbiodinium making the assessment of symbiont diversity critical to our understanding of ecological resilience of these ecosystems. This study characterizes Symbiodinium diversity around the Arabian Peninsula, which contains some of the most thermally diverse and understudied reefs on Earth. Location: Shallow water coral reefs throughout the Red Sea (RS), Sea of Oman (SO), and Persian/Arabian Gulf (PAG). Methods: Next-generation sequencing of the ITS2 marker gene was used to assess Symbiodinium community composition and diversity comprising 892 samples from 46 hard and soft coral genera. Results: Corals were associated with a large diversity of Symbiodinium, which usually consisted of one or two prevalent symbiont types and many types at low abundance. Symbiodinium communities were strongly structured according to geographical region and to a lesser extent by coral host identity. Overall symbiont communities were composed primarily of species from clade A and C in the RS, clade A, C, and D in the SO, and clade C and D in the PAG, representing a gradual shift from C- to D-dominated coral hosts. The analysis of symbiont diversity in an Operational Taxonomic Unit (OTU)-based framework allowed the identification of differences in symbiont taxon richness over geographical regions and host genera. Main conclusions: Our study represents a comprehensive overview over biogeography and molecular diversity of Symbiodinium in the Arabian Seas, where coral reefs thrive in one of the most extreme environmental settings on the planet. As such our data will serve as a baseline for further exploration into the effects of environmental change on host-symbiont pairings and the identification and ecological significance of Symbiodinium types from regions already experiencing \\'Future Ocean\\' conditions.

Morphological changes during the ontogeny of Velapertina indigena (Foraminifera) from the Transylvanian Basin (Romania)

International Nuclear Information System (INIS)

Kiss, P.; Ruman, A.; Hudackova, N.; Hermanova, Z

2017-01-01

Species Velapertina indigena (Luczkowska, 1955) represents common Upper Badenian planktonic foraminifera in the Western Carpathians region. Correct taxonomic determination is often precluded by the complicated ontogenetic evolution resulted into several distinguished morphological stages. In this study the inner shell structures were observed by using tomographic microscope to identify five ontogenetic stages (sensu Brummer). General morphological features of the shell, such as the chamber shape and number, the aperture position and character, the wall texture, and the chambers coiling direction were documented for each stage. The reconstructed ontogenetic model, composed of five ontogenetic stages, was correlated with the 'five stage concept' of Globigerinoides sacculifer. Our study shows potential of the tomographic microscope visualization in improvement of the correct taxonomic classification of non-adult individuals as well as the foraminifera trophic mechanisms interpretation. (authors)

The Physiology of Microbial Symbionts in Fungus-Farming Termites

DEFF Research Database (Denmark)

Rodrigues da Costa, Rafael

. The termites provide the fungus with optimal growth conditions (e.g., stable temperature and humidity), as well as with constant inoculation of growth substrate and protection against alien fungi. In reward, the fungus provides the termites with a protein-rich fungal biomass based diet. In addition...... with their symbionts are main decomposer of organic matter in Africa, and this is reflect of a metabolic complementarity to decompose plant biomass in the genome of the three organisms involved in this symbiosis. Many of the physiological aspects of this symbiosis remain obscure, and here I focus on physiology...... of microbial symbionts associated with fungus-growing termites. Firstly, by using a set of enzyme assays, plant biomass compositional analyses, and RNA sequencing we gained deeper understanding on what enzymes are produced and active at different times of the decomposition process. Our results show that enzyme...

Eocene sea temperatures for the mid-latitude southwest Pacific from Mg/Ca ratios in planktonic and benthic foraminifera

Science.gov (United States)

Creech, John B.; Baker, Joel A.; Hollis, Christopher J.; Morgans, Hugh E. G.; Smith, Euan G. C.

2010-11-01

We have used laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) to measure elemental (Mg/Ca, Al/Ca, Mn/Ca, Zn/Ca, Sr/Ca, and Ba/Ca) ratios of 13 species of variably preserved early to middle Eocene planktonic and benthic foraminifera from New Zealand. The foraminifera were obtained from Ashley Mudstone, mid-Waipara River, South Island, which was deposited at bathyal depth ( ca. 1000 m) on the northern margin of the east-facing Canterbury Basin at a paleo-latitude of ca. 55°S. LA-ICP-MS data yield trace element depth profiles through foraminifera test walls that can be used to identify and exclude zones of surficial contamination and infilling material resulting from diagenetic coatings, mineralisation and detrital sediment. Screened Mg/Ca ratios from 5 species of foraminifera are used to calculate sea temperatures from late Early to early Middle Eocene ( ca. 51 to 46.5 Ma), a time interval that spans the termination of the Early Eocene Climatic Optimum (EECO). During this time, sea surface temperatures (SST) varied from 30 to 24 °C, and bottom water temperatures (BWT) from 21 to 14 °C. Comparison of Mg/Ca sea temperatures with published δ 18O and TEX 86 temperature data from the same samples (Hollis et al., 2009) shows close correspondence, indicating that LA-ICP-MS can provide reliable Mg/Ca sea temperatures even where foraminiferal test preservation is variable. Agreement between the three proxies also implies that Mg/Ca-temperature calibrations for modern planktonic and benthic foraminifera can generally be applied to Eocene species, although some species (e.g., V. marshalli) show significant calibration differences. The Mg/Ca ratio of the Eocene ocean is constrained by our data to be 35-50% lower than the modern ocean depending on which TEX 86 - temperature calibration (Kim et al., 2008; Liu et al., 2009) - is used to compare with the Mg/Ca sea temperatures. Sea temperatures derived from δ 18O analysis of foraminifera from Waipara show

Unraveling the role of fungal symbionts in plant abiotic stress tolerance

Science.gov (United States)

Singh, Lamabam Peter

2011-01-01

Fungal symbionts have been found to be associated with every plant studied in the natural ecosystem, where they colonize and reside entirely or partially in the internal tissues of their host plant. Fungal endophytes can express/form a range of different lifestyle/relationships with different host including symbiotic, mutualistic, commensalistic and parasitic in response to host genotype and environmental factors. In mutualistic association fungal endophyte can enhance growth, increase reproductive success and confer biotic and abiotic stress tolerance to its host plant. Since abiotic stress such as, drought, high soil salinity, heat, cold, oxidative stress and heavy metal toxicity is the common adverse environmental conditions that affect and limit crop productivity worldwide. It may be a promising alternative strategy to exploit fungal endophytes to overcome the limitations to crop production brought by abiotic stress. There is an increasing interest in developing the potential biotechnological applications of fungal endophytes for improving plant stress tolerance and sustainable production of food crops. Here we have described the fungal symbioses, fungal symbionts and their role in abiotic stress tolerance. A putative mechanism of stress tolerance by symbionts has also been covered. PMID:21512319

The Foraminifera of the Saba Bank Expedition, 1972 (Cicar Cruises 34, 35)

NARCIS (Netherlands)

Hofker, J.

1980-01-01

INTRODUCTION Bottom samples obtained by means of a Van Veen grab during the 1972 Saba Bank Expedition (CICAR cruises 34 and 35) appeared to comprise many samples with Foraminifera. This material was kindly put at my disposal by Dr. D. van Harten of the Geological Institute of the University of

A nuptially transmitted ichthyosporean symbiont of Tenebrio molitor (Coleoptera: Tenebrionidae).

Science.gov (United States)

Lord, Jeffrey C; Hartzer, Kris L; Kambhampati, Srinivas

2012-01-01

The yellow mealworm, Tenebrio molitor, harbors a symbiont that has spores with a thick, laminated wall and infects the fat body and ventral nerve chord of adult and larval beetles. In adult males, there is heavy infection of the epithelial cells of the testes and between testes lobes with occasional penetration of the lobes. Spores are enveloped in the spermatophores when they are formed at the time of mating and transferred to the female's bursa copulatrix. Infection has not been found in the ovaries. The sequence of the nuclear small subunit rDNA indicates that the symbiont is a member of the Ichthyosporea, a class of protists near the animal-fungi divergence. © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists.

Earthworms and their Nephridial Symbionts: Co-diversification and Maintenance of the Symbiosis

DEFF Research Database (Denmark)

Lund, Marie Braad; Holmstrup, Martin; Davidson, Seana K.

Earthworms harbor in their nephridia (excretory organs) symbiotic bacteria which densely colonize a specific part of the nephridia, called the ampulla [1]. The symbiosis is species-specific and the symbionts form their own monophyletic genus Verminephrobacter (β-proteobacteria) [2] and are vertic......,J. 1926. Z Morph Ökol Tiere, 6(3):588-624. [2] Schramm,A. et al. 2003. Environ Microbiol 5(9):804-809. [3] Davidson,S.K. & Stahl,D.A. 2006. Appl Environ Microbiol 72(1):769-775. [4] Pandazis,G. 1931. Zentralbl Bakteriol 120:440-453.......Earthworms harbor in their nephridia (excretory organs) symbiotic bacteria which densely colonize a specific part of the nephridia, called the ampulla [1]. The symbiosis is species-specific and the symbionts form their own monophyletic genus Verminephrobacter (β-proteobacteria) [2...... showed no significant differences in growth rate and fecundity between symbiotic and aposymbiotic worms. Thus the symbionts do not appear to have an effect on worm fitness, under growth conditions tested. The underlying functional and maintaining mechanisms of this symbiosis remain a conundrum. [1] Knop...

The importance of methane and thiosulfate in the metabolism of the bacterial symbionts of two deep-sea mussels

Science.gov (United States)

Fisher, C.R.; Childress, J.J.; Oremland, R.S.; Bidigare, R.R.

1987-01-01

Undescribed hydrocarbon-seep mussels were collected from the Louisiana Slope, Gulf of Mexico, during March 1986, and the ultrastructure of their gills was examined and compared to Bathymodiolus thermophilus, a mussel collected from the deep-sea hydrothermal vents on the Gala??pagos Rift in March 1985. These closely related mytilids both contain abundant symbiotic bacteria in their gills. However, the bacteria from the two species are distinctly different in both morphology and biochemistry, and are housed differently within the gills of the two mussels. The symbionts from the seep mussel are larger than the symbionts from B. thermophilus and, unlike the latter, contain stacked intracytoplasmic membranes. In the seep mussel three or fewer symbionts appear to be contained in each host-cell vacuole, while in B. thermophilus there are often more than twenty bacteria visible in a single section through a vacuole. The methanotrophic nature of the seep-mussel symbionts was confirmed in 14C-methane uptake experiments by the appearance of label in both CO2 and acid-stable, non-volatile, organic compounds after a 3 h incubation of isolated gill tissue. Furthermore, methane consumption was correlated with methanol dehydrogenase activity in isolated gill tissue. Activity of ribulose-1,5-biphosphate (RuBP) carboxylase and 14CO2 assimilation studies indicate the presence of either a second type of symbiont or contaminating bacteria on the gills of freshly captured seep mussels. A reevaluation of the nutrition of the symbionts in B. thermophilus indicates that while the major symbiont is not a methanotroph, its status as a sulfur-oxidizing chemoautotroph, as has been suggested previously, is far from proven. ?? 1987 Springer-Verlag.

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals.

Science.gov (United States)

Silverstein, Rachel N; Cunning, Ross; Baker, Andrew C

2015-01-01

Mutualistic organisms can be particularly susceptible to climate change stress, as their survivorship is often limited by the most vulnerable partner. However, symbiotic plasticity can also help organisms in changing environments by expanding their realized niche space. Coral-algal (Symbiodinium spp.) symbiosis exemplifies this dichotomy: the partnership is highly susceptible to 'bleaching' (stress-induced symbiosis breakdown), but stress-tolerant symbionts can also sometimes mitigate bleaching. Here, we investigate the role of diverse and mutable symbiotic partnerships in increasing corals' ability to thrive in high temperature conditions. We conducted repeat bleaching and recovery experiments on the coral Montastraea cavernosa, and used quantitative PCR and chlorophyll fluorometry to assess the structure and function of Symbiodinium communities within coral hosts. During an initial heat exposure (32 °C for 10 days), corals hosting only stress-sensitive symbionts (Symbiodinium C3) bleached, but recovered (at either 24 °C or 29 °C) with predominantly (>90%) stress-tolerant symbionts (Symbiodinium D1a), which were not detected before bleaching (either due to absence or extreme low abundance). When a second heat stress (also 32 °C for 10 days) was applied 3 months later, corals that previously bleached and were now dominated by D1a Symbiodinium experienced less photodamage and symbiont loss compared to control corals that had not been previously bleached, and were therefore still dominated by Symbiodinium C3. Additional corals that were initially bleached without heat by a herbicide (DCMU, at 24 °C) also recovered predominantly with D1a symbionts, and similarly lost fewer symbionts during subsequent thermal stress. Increased thermotolerance was also not observed in C3-dominated corals that were acclimated for 3 months to warmer temperatures (29 °C) before heat stress. These findings indicate that increased thermotolerance post-bleaching resulted from

70 kD stress protein (Hsp70) analysis in living shallow-water benthic foraminifera

Digital Repository Service at National Institute of Oceanography (India)

Heinz, P.; Marten, R.A; Linshy, V.N.; Haap, T.; Geslin, E.; Kohler, H-R.

Hsp70 is a phylogenetically highly conserved protein family present in all eukaryotic organisms tested so far. Its synthesis is induced by proteotoxic stress. The detection of Hsp70 in foraminifera is presented here. We introduce a standard...

Orally Delivered Scorpion Antimicrobial Peptides Exhibit Activity against Pea Aphid (Acyrthosiphon pisum) and Its Bacterial Symbionts.

Science.gov (United States)

Luna-Ramirez, Karen; Skaljac, Marisa; Grotmann, Jens; Kirfel, Phillipp; Vilcinskas, Andreas

2017-08-24

Aphids are severe agricultural pests that damage crops by feeding on phloem sap and vectoring plant pathogens. Chemical insecticides provide an important aphid control strategy, but alternative and sustainable control measures are required to avoid rapidly emerging resistance, environmental contamination, and the risk to humans and beneficial organisms. Aphids are dependent on bacterial symbionts, which enable them to survive on phloem sap lacking essential nutrients, as well as conferring environmental stress tolerance and resistance to parasites. The evolution of aphids has been accompanied by the loss of many immunity-related genes, such as those encoding antibacterial peptides, which are prevalent in other insects, probably because any harm to the bacterial symbionts would inevitably affect the aphids themselves. This suggests that antimicrobial peptides (AMPs) could replace or at least complement conventional insecticides for aphid control. We fed the pea aphids ( Acyrthosiphon pisum ) with AMPs from the venom glands of scorpions. The AMPs reduced aphid survival, delayed their reproduction, displayed in vitro activity against aphid bacterial symbionts, and reduced the number of symbionts in vivo. Remarkably, we found that some of the scorpion AMPs compromised the aphid bacteriome, a specialized organ that harbours bacterial symbionts. Our data suggest that scorpion AMPs holds the potential to be developed as bio-insecticides, and are promising candidates for the engineering of aphid-resistant crops.

Orally Delivered Scorpion Antimicrobial Peptides Exhibit Activity against Pea Aphid (Acyrthosiphon pisum and Its Bacterial Symbionts

Directory of Open Access Journals (Sweden)

Karen Luna-Ramirez

2017-08-01

Full Text Available Aphids are severe agricultural pests that damage crops by feeding on phloem sap and vectoring plant pathogens. Chemical insecticides provide an important aphid control strategy, but alternative and sustainable control measures are required to avoid rapidly emerging resistance, environmental contamination, and the risk to humans and beneficial organisms. Aphids are dependent on bacterial symbionts, which enable them to survive on phloem sap lacking essential nutrients, as well as conferring environmental stress tolerance and resistance to parasites. The evolution of aphids has been accompanied by the loss of many immunity-related genes, such as those encoding antibacterial peptides, which are prevalent in other insects, probably because any harm to the bacterial symbionts would inevitably affect the aphids themselves. This suggests that antimicrobial peptides (AMPs could replace or at least complement conventional insecticides for aphid control. We fed the pea aphids (Acyrthosiphon pisum with AMPs from the venom glands of scorpions. The AMPs reduced aphid survival, delayed their reproduction, displayed in vitro activity against aphid bacterial symbionts, and reduced the number of symbionts in vivo. Remarkably, we found that some of the scorpion AMPs compromised the aphid bacteriome, a specialized organ that harbours bacterial symbionts. Our data suggest that scorpion AMPs holds the potential to be developed as bio-insecticides, and are promising candidates for the engineering of aphid-resistant crops.

Living Behaviors and Molecular Characterization of Benthic Foraminifera in the Arabian Gulf

Science.gov (United States)

Arslan, Muhammad; Kaminski, Michael; Khalil, Amjad; Holzmann, Maria

2016-04-01

The benthic foraminifera are among the major carbonate producers in modern Arabian Gulf waters and are found living in all marine habitats. They have been recognized as proxies to assess paleoenvironmental changes, however, their biological behaviors in modern environments needs to be further studied. The current study attempts to explain the biology of benthic foraminifera in terms of their living behaviors and molecular characterization, from different regions of the western side of the Arabian Gulf. Accordingly, two major groups of benthic foraminifera, namely rotaliids and miliolids, are examined under laboratory conditions. Results illustrate that the rotaliids are more resistant to environmental changes than miliolids, as their granular reticulopodial network is stronger than among the miliolids, with high cytoplasmic streaming. The pseudopodia extend out from both primary and secondary apertures, and aid the organism in locomotion by attaching to the wall of hard substrate. As a result they drag their whole bodies toward the direction of motion. In rotaliids, the movement rate is high and is attributed to the extension of pseudopodia through all apertures, compared with miliolids in which pseudopodia extend out from the primary aperture only. The innate behavior of both groups was observed as a function of external stimulus, i.e., light, nutrients, and availability of substrate. The observation on average life span reflected that the rotaliids was able to survive longer than miliolids. Molecular analysis reveals the presence of four groups, i.e., Ammonia, Murrayinella, Glabratellina, and Elphidium which support the morphological taxonomy at the genus level. However, BLAST analysis contradicts the species level taxonomy, which challenges the classification based upon hard-shell morphology. Nevertheless, monophyletic clustering is observed among all major groups. The study concludes that the morphological taxonomy needs to be augmented by molecular analysis

Effect of carbonate ion concentration and irradiance on calcification in planktonic foraminifera

DEFF Research Database (Denmark)

Lombard, Fabien; da Rocha, R. E.; Bijma, J.

2010-01-01

rates of these two species are projected to be 6 to 13% lower than the present conditions, while the final shell weights are reduced by 20 to 27% for O. universa and by 4 to 6% for G. sacculifer. These results indicate that ocean acidification would impact on calcite production by foraminifera and may...

Characterization of a Newly Discovered Symbiont of the Whitefly Bemisia tabaci (Hemiptera: Aleyrodidae)

Science.gov (United States)

Bing, Xiao-Li; Yang, Jiao; Zchori-Fein, Einat; Wang, Xiao-Wei

2013-01-01

Bemisia tabaci (Hemiptera: Aleyrodidae) is a species complex containing >28 cryptic species, some of which are important crop pests worldwide. Like many other sap-sucking insects, whiteflies harbor an obligatory symbiont, “Candidatus Portiera aleyrodidarum,” and a number of secondary symbionts. So far, six genera of secondary symbionts have been identified in B. tabaci. In this study, we report and describe the finding of an additional bacterium in the indigenous B. tabaci cryptic species China 1 (formerly known as B. tabaci biotype ZHJ3). Phylogenetic analysis based on the 16S rRNA and gltA genes showed that the bacterium belongs to the Alphaproteobacteria subdivision of the Proteobacteria and has a close relationship with human pathogens of the genus Orientia. Consequently, we temporarily named it Orientia-like organism (OLO). OLO was found in six of eight wild populations of B. tabaci China 1, with the infection rate ranging from 46.2% to 76.8%. Fluorescence in situ hybridization (FISH) of B. tabaci China 1 in nymphs and adults revealed that OLOs are confined to the bacteriome and co-occur with “Ca. Portiera aleyrodidarum.” The vertical transmission of OLO was demonstrated by detection of OLO at the anterior pole end of the oocytes through FISH. Quantitative PCR analysis of population dynamics suggested a complex interaction between “Ca. Portiera aleyrodidarum” and OLO. Based on these results, we propose “Candidatus Hemipteriphilus asiaticus” for the classification of this symbiont from B. tabaci. PMID:23144129

Burdigalian turbid water patch reef environment revealed by larger benthic foraminifera

Science.gov (United States)

Novak, V.; Renema, W.; Throughflow-project

2012-04-01

Ancient isolated patch reefs outcropping from siliciclastic sediments are a trademark for the Miocene carbonate deposits occurring in East Kalimantan, Indonesia. They develop in transitional shelf sediments deposited between deltaic and deep marine deposits (Allen and Chambers, 1998). The Batu Putih Limestone (Wilson, 2005) and similar outcrops in adjacent areas have been characterized as shallow water carbonates influenced by high siliciclastic input, showing low relief patch reefs in turbid waters. Larger benthic foraminifera (LBF) are excellent markers for biochronology and paleoenvironmental reconstruction. This study aims to reveal age and paleoenvironment of a shallow water carbonate patch reef developed in mixed depositional system by using LBF and microfacies analysis. The studied section is located near Bontang, East Kalimantan, and is approximately 80 m long and 12 m high. It is placed within Miocene sediments in the central part of the Kutai Basin. Patch reef and capping sediments were logged through eight transects along section and divided into nine different lithological units from which samples were collected. Thin sections and isolated specimens of larger benthic foraminifera were analyzed and recognized to species level (where possible) providing age and environmental information. Microfacies analysis of thin sections included carbonate classification (textural scheme of Dunham, 1962) and assemblage composition of LBF, algae and corals relative abundance. Three environmentally indicative groups of LBF were separated based on test morphology, habitat or living relatives (Hallock and Glenn, 1986). Analysed foraminifera assemblage suggests Burdigalian age (Tf1). With use of microfacies analysis nine successive lithological units were grouped into five facies types. Paleoenvironmental reconstruction of LBF fossil assemblage indicate two cycles of possible deepening recorded in the section. Based on high muddy matrix ratio in analyzed thin-sections we

Spatial and temporal distribution patterns of benthic foraminifera in the Northeast Water Polynya, Greenland

Science.gov (United States)

Ahrens, Michael J.; Graf, Gerhard; Altenbach, Alexander V.

1997-01-01

Abundance, biofacies and ATP content of benthic foraminifera (>63 μm) were studied in the Northeast Water (NEW) Polynya (77-81°N, 5-17°W) over the ice-free summer, 1993, to investigate how a polynya system might influence the underlying benthic community. In the living assemblage, distinguished by Rose Bengal staining, over 60 taxa could be identified. The biofacies identified was similar to that of other Arctic shelf habitats. Foraminifera were counted in 3 size fractions (63-125 μm, 125-250 μm and >250 μm), with 65% of the foraminifera occurring in the smallest size fraction (63-125 μm). Total abundances (>63 μm) in the uppermost 1 cm averaged approximately 200 ind/10 cm 3 and declined down-core, as did the number of species. Abundances and species composition correlated positively with sediment chlorophyll and ATP content, with maxima occurring in the shallower northern regions of the polynya, suggesting a general dependence on food. Foraminera biomass was estimated to be 0.1-0.3 g C org/m 2. Abundances, biomass and ATP content were comparable to ice-free, deep-sea regions in the Norwegian Sea. Temporal changes observed over a 2 month period at one location were difficult to distinguish from spatial and analytical variability. Contrary to expectations, growth was unpronounced at the community and at a species level, implying either a delayed response of the benthic foraminiferal community to food inputs from the overlying water column or the presence of biological limitations other than food, such as predation.

Host and Symbiont Jointly Control Gut Microbiota during Complete Metamorphosis

Science.gov (United States)

Johnston, Paul R.; Rolff, Jens

2015-01-01

Holometabolous insects undergo a radical anatomical re-organisation during metamorphosis. This poses a developmental challenge: the host must replace the larval gut but at the same time retain symbiotic gut microbes and avoid infection by opportunistic pathogens. By manipulating host immunity and bacterial competitive ability, we study how the host Galleria mellonella and the symbiotic bacterium Enterococcus mundtii interact to manage the composition of the microbiota during metamorphosis. Disenabling one or both symbiotic partners alters the composition of the gut microbiota, which incurs fitness costs: adult hosts with a gut microbiota dominated by pathogens such as Serratia and Staphylococcus die early. Our results reveal an interaction that guarantees the safe passage of the symbiont through metamorphosis and benefits the resulting adult host. Host-symbiont “conspiracies” as described here are almost certainly widespread in holometobolous insects including many disease vectors. PMID:26544881

Understanding nutrient exchange between Azolla and its symbiont, Nostoc

OpenAIRE

Eily, Ariana

2017-01-01

This is an in-depth look at the research I am doing for my doctoral degree at Duke University, investigating the exchange of nutrients between the aquatic fern genus, Azolla, and its cyanobacterial symbiont, Nostoc azollae. All of the illustrations and microscopy images within this presentation are my own.

Contrasting physiological plasticity in response to environmental stress within different cnidarians and their respective symbionts

Science.gov (United States)

Hoadley, Kenneth D.; Pettay, Daniel. T.; Dodge, Danielle; Warner, Mark E.

2016-06-01

Given concerns surrounding coral bleaching and ocean acidification, there is renewed interest in characterizing the physiological differences across the multiple host-algal symbiont combinations commonly found on coral reefs. Elevated temperature and CO2 were used to compare physiological responses within the scleractinian corals Montipora hirsuta ( Symbiodinium C15) and Pocillopora damicornis ( Symbiodinium D1), as well as the corallimorph (a non-calcifying anthozoan closely related to scleractinians) Discosoma nummiforme ( Symbiodinium C3). Several physiological proxies were affected more by temperature than CO2, including photochemistry, algal number and cellular chlorophyll a. Marked differences in symbiont number, chlorophyll and volume contributed to distinctive patterns of chlorophyll absorption among these animals. In contrast, carbon fixation either did not change or increased under elevated temperature. Also, the rate of photosynthetically fixed carbon translocated to each host did not change, and the percent of carbon translocated to the host increased in the corallimorph. Comparing all data revealed a significant negative correlation between photosynthetic rate and symbiont density that corroborates previous hypotheses about carbon limitation in these symbioses. The ratio of symbiont-normalized photosynthetic rate relative to the rate of symbiont-normalized carbon translocation (P:T) was compared in these organisms as well as the anemone, Exaiptasia pallida hosting Symbiodinium minutum, and revealed a P:T close to unity ( D. nummiforme) to a range of 2.0-4.5, with the lowest carbon translocation in the sea anemone. Major differences in the thermal responses across these organisms provide further evidence of a range of acclimation potential and physiological plasticity that highlights the need for continued study of these symbioses across a larger group of host taxa.

Carbon and nitrogen uptake of calcareous benthic foraminifera along a depth-related oxygen gradient in the OMZ of the Arabian Sea

Directory of Open Access Journals (Sweden)

Annekatrin Julie Enge

2016-02-01

Full Text Available Foraminifera are an important faunal element of the benthos in oxygen-depleted settings such as Oxygen Minimum Zones (OMZs where they can play a relevant role in the processing of phytodetritus. We investigated the uptake of phytodetritus (labeled with 13C and 15N by cal-careous foraminifera in the 0-1 cm sediment horizon under different oxygen concentrations within the OMZ in the eastern Arabian Sea. The in situ tracer experiments were carried out along a depth transect on the Indian margin over a period of 4 to 10 days. The uptake of phy-todetrital carbon within 4 days by all investigated species shows that phytodetritus is a rele-vant food source for foraminifera in OMZ sediments. The decrease of total carbon uptake from 540 to 1100 m suggests a higher demand for carbon by species in the low-oxygen core region of the OMZ or less food competition with macrofauna. Especially Uvigerinids showed high uptake of phytodetrital carbon at the lowest oxygenated site. Variation in the ratio of phytodetrital carbon to nitrogen between species and sites indicates that foraminiferal carbon and nitrogen use can be decoupled and different nutritional demands are found between spe-cies. Lower ratio of phytodetrital carbon and nitrogen at 540 m could hint for greater demand or storage of food-based nitrogen, ingestion or hosting of bacteria under almost anoxic condi-tions. Shifts in the foraminiferal assemblage structure (controlled by oxygen or food availabil-ity and in the presence of other benthic organisms account for observed changes in the pro-cessing of phytodetritus in the different OMZ habitats. Foraminifera dominate the short-term processing of phytodetritus in the OMZ core but are less important in the lower OMZ bounda-ry region of the Indian margin as biological interactions and species distribution of foraminif-era change with depth and oxygen levels.

The relative sensitivity of benthonic foraminifera in the polluted marine environment of Cola Bay, Goa

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.

. The organic carbon content in the sediment is inversely proportional to the abundance of the benthonic populations. Living foraminifera are very useful in establishing zones of effects of pollutants in a region. Correlation coefficient between TFN and TSN...

Beneficial effect of Verminephrobacter nephridial symbionts on the fitness of the earthworm Aporrectodea tuberculata

DEFF Research Database (Denmark)

Lund, Marie Braad; Holmstrup, Martin; Lomstein, Bente Aagaard

2010-01-01

grown on the low nutrient diet. Thus, the Verminephrobacter nephridial symbionts do have a beneficial effect on their earthworm host. Cocoons with and without symbionts did not significantly differ in total organic carbon (TOC), total nitrogen (TN), or total hydrolysable amino acid (THAA) content, which...

Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants

DEFF Research Database (Denmark)

Zhang, Mingzi; Poulsen, Michael; Currie, Cameron R

2007-01-01

Symbiont choice has been proposed to play an important role in shaping many symbiotic relationships, including the fungus-growing ant-microbe mutualism. Over millions of years, fungus-growing ants have defended their fungus gardens from specialized parasites with antibiotics produced...

Marine ecology conditions at Weda Bay, North Maluku based on statistical analysis on distribution of recent foraminifera

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Kurniasih Anis

2017-01-01

Full Text Available Analysis of foraminifera in geology,usually being used to find the age of rocks/ sediments and depositional environment. In this study, recent foraminifera was used not only to determinethe sedimentary environment,but also to estimate the ecological condition of the water through a statistical approach.Analysis was performed quantitatively in 10 surface seabed sediment samples in Weda Bay North Maluku. The analysis includes dominance (Sympson Index, diversity and evenness (Shannon Index, and the ratio of planktonic -benthic. The results were shown in the plotting diagram of M-R-T (Miliolid-Rotalid-Textularid to determine the depositional environment. Quantitative analysis was performed using Past software (paleontological version Statistic 1:29.The analysis result showed there was no domination of certain taxon with a moderate degree of evenness and stable communities and considerably a moderate diversity. The results of this analysis indicated that research area had a stable water conditions with the optimum level of carbonate content, oxygen supply, salinity, and temperature. The ratio of planktonic and benthic indicate the relative depth, which was deeper the water increased the percentage of planktonic foraminifera. Based on M-R-T diagram showed the distribution of sediment deposited on exposed carbonate (carbonate platform environment with normal saline.

Comparative Genomics of Facultative Bacterial Symbionts Isolated from European Orius Species Reveals an Ancestral Symbiotic Association

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Xiaorui Chen

2017-10-01

Full Text Available Pest control in agriculture employs diverse strategies, among which the use of predatory insects has steadily increased. The use of several species within the genus Orius in pest control is widely spread, particularly in Mediterranean Europe. Commercial mass rearing of predatory insects is costly, and research efforts have concentrated on diet manipulation and selective breeding to reduce costs and improve efficacy. The characterisation and contribution of microbial symbionts to Orius sp. fitness, behaviour, and potential impact on human health has been neglected. This paper provides the first genome sequence level description of the predominant culturable facultative bacterial symbionts associated with five Orius species (O. laevigatus, O. niger, O. pallidicornis, O. majusculus, and O. albidipennis from several geographical locations. Two types of symbionts were broadly classified as members of the genera Serratia and Leucobacter, while a third constitutes a new genus within the Erwiniaceae. These symbionts were found to colonise all the insect specimens tested, which evidenced an ancestral symbiotic association between these bacteria and the genus Orius. Pangenome analyses of the Serratia sp. isolates offered clues linking Type VI secretion system effector–immunity proteins from the Tai4 sub-family to the symbiotic lifestyle.

Comparative Genomics of Facultative Bacterial Symbionts Isolated from European Orius Species Reveals an Ancestral Symbiotic Association

Science.gov (United States)

Chen, Xiaorui; Hitchings, Matthew D.; Mendoza, José E.; Balanza, Virginia; Facey, Paul D.; Dyson, Paul J.; Bielza, Pablo; Del Sol, Ricardo

2017-01-01

Pest control in agriculture employs diverse strategies, among which the use of predatory insects has steadily increased. The use of several species within the genus Orius in pest control is widely spread, particularly in Mediterranean Europe. Commercial mass rearing of predatory insects is costly, and research efforts have concentrated on diet manipulation and selective breeding to reduce costs and improve efficacy. The characterisation and contribution of microbial symbionts to Orius sp. fitness, behaviour, and potential impact on human health has been neglected. This paper provides the first genome sequence level description of the predominant culturable facultative bacterial symbionts associated with five Orius species (O. laevigatus, O. niger, O. pallidicornis, O. majusculus, and O. albidipennis) from several geographical locations. Two types of symbionts were broadly classified as members of the genera Serratia and Leucobacter, while a third constitutes a new genus within the Erwiniaceae. These symbionts were found to colonise all the insect specimens tested, which evidenced an ancestral symbiotic association between these bacteria and the genus Orius. Pangenome analyses of the Serratia sp. isolates offered clues linking Type VI secretion system effector–immunity proteins from the Tai4 sub-family to the symbiotic lifestyle. PMID:29067021

Growth tradeoffs associated with thermotolerant symbionts in the coral Pocillopora damicornis are lost in warmer oceans

Science.gov (United States)

Cunning, R.; Gillette, P.; Capo, T.; Galvez, K.; Baker, A. C.

2015-03-01

The growth and survival of reef corals are influenced by their symbiotic algal partners ( Symbiodinium spp.), which may be flexible in space and time. Tradeoffs among partnerships exist such that corals with thermotolerant symbionts (e.g., clade D) resist bleaching but grow more slowly, making the long-term ecosystem-level impacts of different host-symbiont associations uncertain. However, much of this uncertainty is due to limited data regarding these tradeoffs and particularly how they are mediated by the environment. To address this knowledge gap, we measured growth and survival of Pocillopora damicornis with thermally sensitive (clade C) or tolerant (clade D) symbionts at three temperatures over 18-55 weeks. Warming reduced coral growth overall, but altered the tradeoffs associated with symbiont type. While clade D corals grew 35-40 % slower than clade C corals at cooler temperatures (26 °C), warming of 1.5-3 °C reduced and eliminated this growth disadvantage. These results suggest that although warmer oceans will negatively impact corals, clade D may enhance survival at no cost to growth relative to clade C. Understanding these genotype-environment interactions can help improve modeling efforts and conservation strategies for reefs under global climate change.

Benthic foraminifera as biostratigraphical and paleoecological indicators: An example from Oligo-Miocene deposits in the SW of Zagros basin, Iran

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Asghar Roozpeykar

2016-01-01

Full Text Available The Asmari Formation is a predominantly carbonate lithostratigraphic unit that outcrops in the Zagros Basin. Micropaleontological studies of the Asmari Formation in the Dehdasht area led to the identification of 51 species of foraminifera taxa. Among the foraminifera, Nummulites cf. vascus, Operculin sp., Operculina complanata, Eulepidina dilatata, Eulepidina elephantine, Ditrupa sp., Miogypsina sp., Elphidium sp. 14, and Borelis melo curdica are the most important. The Lepidocyclina-Operculina-Ditrupa assemblage zone represents the Rupelian–Chattian age. The Aquitanian age is also defined by co-occurrence of Miogypsina sp. and Elphidium sp. 14, and finally, the first occurrence of Borelis melo curdica represents the Burdigalian. Based on faunal assemblages, the following paleoenvironmental settings are determined for the deposition of the study section: (1 the deep, offshore settings in the aphotic zone dominated by pelagic and small benthic foraminifera; (2 the low energy, turbid and low light parts of the oligophotic zone characterized by large and flat lepidocyclinids (Eulepidina and Nummulitidae; (3 the low turbidity, deeper part of the inner ramp dominated by Miogypsinoides, Neorotalia, Lepidocyclina, Operculina and Archias; (4 the shallow, marginal marine environment exposed to salinity fluctuations (short-term salinity fluctuations or fully marine conditions dominated by small benthic Foraminifera (Ammonia and Elphidium; (5 highly translucent, shallowest part of the inner ramp dominated by representatives of Borelis, Meandropsina and Peneroplis. The biotic assemblages represent warm tropical waters with oligotrophic to slightly mesotrophic conditions.

Rickettsia ‘In’ and ‘Out’: Two Different Localization Patterns of a Bacterial Symbiont in the Same Insect Species

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Caspi-Fluger, Ayelet; Inbar, Moshe; Mozes-Daube, Netta; Mouton, Laurence; Hunter, Martha S.; Zchori-Fein, Einat

2011-01-01

Intracellular symbionts of arthropods have diverse influences on their hosts, and their functions generally appear to be associated with their localization within the host. The effect of localization pattern on the role of a particular symbiont cannot normally be tested since the localization pattern within hosts is generally invariant. However, in Israel, the secondary symbiont Rickettsia is unusual in that it presents two distinct localization patterns throughout development and adulthood in its whitefly host, Bemisia tabaci (B biotype). In the “scattered” pattern, Rickettsia is localized throughout the whitefly hemocoel, excluding the bacteriocytes, where the obligate symbiont Portiera aleyrodidarum and some other secondary symbionts are housed. In the “confined” pattern, Rickettsia is restricted to the bacteriocytes. We examined the effects of these patterns on Rickettsia densities, association with other symbionts (Portiera and Hamiltonella defensa inside the bacteriocytes) and on the potential for horizontal transmission to the parasitoid wasp, Eretmocerus mundus, while the wasp larvae are developing within the whitefly nymph. Sequences of four Rickettsia genes were found to be identical for both localization patterns, suggesting that they are closely related strains. However, real-time PCR analysis showed very different dynamics for the two localization types. On the first day post-adult emergence, Rickettsia densities were 21 times higher in the “confined” pattern vs. “scattered” pattern whiteflies. During adulthood, Rickettsia increased in density in the “scattered” pattern whiteflies until it reached the “confined” pattern Rickettsia density on day 21. No correlation between Rickettsia densities and Hamiltonella or Portiera densities were found for either localization pattern. Using FISH technique, we found Rickettsia in the gut of the parasitoid wasps only when they developed on whiteflies with the “scattered” pattern. The

Oxygen isotopic analyses of individual planktic foraminifera species: Implications for seasonality in the western Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Naidu, P.D.; Niitsuma, N.; Naik, S.S.

The variation of stable isotopes between individual shells of planktic foraminifera of a given species and size may provide short-term seasonal insight on Paleoceanography. In this context, oxygen isotope analyses of individual Globigerinoides...

igh Symbiont Relatedness Stabilizes Mutualistic Cooperation in Fungus-Growing Termites

NARCIS (Netherlands)

Aanen, D.K.; Fine Licht, De H.H.; Debets, A.J.M.; Kerstes, N.A.G.; Hoekstra, R.F.; Boomsma, J.J.

2009-01-01

It is unclear how mutualistic relationships can be stable when partners disperse freely and have the possibility of forming associations with many alternative genotypes. Theory predicts that high symbiont relatedness should resolve this problem, but the mechanisms to enforce this have rarely been

Comparative Genomic Analysis of Holospora spp., Intranuclear Symbionts of Paramecia

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Sofya K. Garushyants

2018-04-01

Full Text Available While most endosymbiotic bacteria are transmitted only vertically, Holospora spp., an alphaproteobacterium from the Rickettsiales order, can desert its host and invade a new one. All bacteria from the genus Holospora are intranuclear symbionts of ciliates Paramecium spp. with strict species and nuclear specificity. Comparative metabolic reconstruction based on the newly sequenced genome of Holospora curviuscula, a macronuclear symbiont of Paramecium bursaria, and known genomes of other Holospora species shows that even though all Holospora spp. can persist outside the host, they cannot synthesize most of the essential small molecules, such as amino acids, and lack some central energy metabolic pathways, including glycolysis and the citric acid cycle. As the main energy source, Holospora spp. likely rely on nucleotides pirated from the host. Holospora-specific genes absent from other Rickettsiales are possibly involved in the lifestyle switch from the infectious to the reproductive form and in cell invasion.

Social insect symbionts: evolution in homeostatic fortresses

DEFF Research Database (Denmark)

Hughes, David P; Pierce, Naomi E; Boomsma, Jacobus J

2008-01-01

The massive environmentally buffered nests of some social insects can contain millions of individuals and a wide variety of parasites, commensals and mutualists. We suggest that the ways in which these homeostatic fortress environments affect the evolution of social insect symbionts are relevant...... in these nests. We hypothesize that biodiversity gradients in these hotspots might be less affected by abiotic latitudinal clines than gradients in neighboring 'control' habitats. We suggest several research lines to test these ideas....

Anthropogenic infilling of a Bermudian sinkhole and its impact on sedimentation and benthic foraminifera in the adjacent anchialine cave environment

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Jacquelyn N. Cresswell

2017-09-01

Full Text Available In the mid-20th century, an inland brackish pond from Bermuda, known as Eve’s Pond, was filled with marine sediment from an adjacent coastal lagoon. At this time, an eyewitness reported “…sediment billowing out of the Green Bay Cave for days…”, which is a marine-dominated anchialine cave located proximal to the former location of Eve’s Pond (~200 m. The purpose of this study was to evaluate the potential impact of this infilling event on cave sedimentation and benthic meiofaunal communities, as proxied by the unicellular protists foraminifera that remain preserved in the sediment record. Eight sediment cores were collected from an underwater passage in Green Bay Cave in a transect towards the location where Eve’s Pond was surveyed in 1901 CE. The sediment cores were analyzed for visual and density changes (photography, X-radiography, textural variability, benthic foraminifera fauna and diversity, and radiocarbon dating. The recovered sediment cores mostly sampled a late Holocene carbonate mud facies that had been described during previous research in the cave, with benthic foraminiferal assemblages post-dating the onset of seawater circulating between the saline groundwater flooding the cave and the adjacent Harrington Sound ~1,900 years ago. However, two cores located further into the cave (cores 13 and 17 contain a carbonate sand layer with lagoon foraminifera that is anomalous with respect to the Holocene depositional history of the cave and is most likely related to the mid-20th century infilling of Eve’s Pond. Examination of these two cores showed that after the infilling event, the community of benthic foraminifera rapidly reverted to pre-impact assemblages with foraminiferal stygophiles (e.g., Spirophthalmidium emaciatum, Sigmoilina tenuis, which were not displaced by new colonizers introduced into the cave by the dredge spoils. We caution that the results cannot be extrapolated to the pelagic crustacean community, but the

Relationship of the luminous bacterial symbiont of the Caribbean flashlight fish, Kryptophanaron alfredi (family Anomalopidae) to other luminous bacteria based on bacterial luciferase (luxA) genes.

Science.gov (United States)

Haygood, M G

1990-01-01

Flashlight fishes (family Anomalopidae) have light organs that contain luminous bacterial symbionts. Although the symbionts have not yet been successfully cultured, the luciferase genes have been cloned directly from the light organ of the Caribbean species, Kryptophanaron alfredi. The goal of this project was to evaluate the relationship of the symbiont to free-living luminous bacteria by comparison of genes coding for bacterial luciferase (lux genes). Hybridization of a lux AB probe from the Kryptophanaron alfredi symbiont to DNAs from 9 strains (8 species) of luminous bacteria showed that none of the strains tested had lux genes highly similar to the symbiont. The most similar were a group consisting of Vibrio harveyi, Vibrio splendidus and Vibrio orientalis. The nucleotide sequence of the luciferase alpha subunit gene luxA) of the Kryptophanaron alfredi symbiont was determined in order to do a more detailed comparison with published luxA sequences from Vibrio harveyi, Vibrio fischeri and Photobacterium leiognathi. The hybridization results, sequence comparisons and the mol% G + C of the Kryptophanaron alfredi symbiont luxA gene suggest that the symbiont may be considered as a new species of luminous Vibrio related to Vibrio harveyi.

Salinity controls on Na incorporation in Red Sea planktonic foraminifera

Science.gov (United States)

Mezger, E. M.; de Nooijer, L. J.; Boer, W.; Brummer, G. J. A.; Reichart, G. J.

2016-12-01

Whereas several well-established proxies are available for reconstructing past temperatures, salinity remains challenging to assess. Reconstructions based on the combination of (in)organic temperature proxies and foraminiferal stable oxygen isotopes result in relatively large uncertainties, which may be reduced by application of a direct salinity proxy. Cultured benthic and planktonic foraminifera showed that Na incorporation in foraminiferal shell calcite provides a potential independent proxy for salinity. Here we present the first field calibration of such a potential proxy. Living planktonic foraminiferal specimens from the Red Sea surface waters were collected and analyzed for their Na/Ca content using laser ablation quadrupole inductively coupled plasma mass spectrometry. Using the Red Sea as a natural laboratory, the calibration covers a broad range of salinities over a steep gradient within the same water mass. For both Globigerinoides ruber and Globigerinoides sacculifer calcite Na/Ca increases with salinity, albeit with a relatively large intraspecimen and interspecimen variability. The field-based calibration is similar for both species from a salinity of 36.8 up to 39.6, while values for G. sacculifer deviate from this trend in the northernmost transect. It is hypothesized that the foraminifera in the northernmost part of the Red Sea are (partly) expatriated and hence should be excluded from the Na/Ca-salinity calibration. Incorporation of Na in foraminiferal calcite therefore provides a potential proxy for salinity, although species-specific calibrations are still required and more research on the effect of temperature is needed.

Effect of ocean acidification on the benthic foraminifera Ammonia sp. is caused by a decrease in carbonate ion concentration

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N. Keul

2013-10-01

Full Text Available About 30% of the anthropogenically released CO2 is taken up by the oceans; such uptake causes surface ocean pH to decrease and is commonly referred to as ocean acidification (OA. Foraminifera are one of the most abundant groups of marine calcifiers, estimated to precipitate ca. 50 % of biogenic calcium carbonate in the open oceans. We have compiled the state of the art literature on OA effects on foraminifera, because the majority of OA research on this group was published within the last three years. Disparate responses of this important group of marine calcifiers to OA were reported, highlighting the importance of a process-based understanding of OA effects on foraminifera. We cultured the benthic foraminifer Ammonia sp. under a range of carbonate chemistry manipulation treatments to identify the parameter of the carbonate system causing the observed effects. This parameter identification is the first step towards a process-based understanding. We argue that [CO32−] is the parameter affecting foraminiferal size-normalized weights (SNWs and growth rates. Based on the presented data, we can confirm the strong potential of Ammonia sp. foraminiferal SNW as a [CO32−] proxy.

Benthic Foraminifera and Bacterial Activity as a Proxy for Environmental Characterization in Potengi Estuary, Rio Grande do Norte, Brazil

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Frederico S. da Silva

2010-01-01

Full Text Available The aim of this study was to identify possible zonation patterns and assess the environmental impact on the Potengi River Estuary, Rio Grande do Norte State, through the distribution of benthic foraminifera associated to bacterial activity and abiotic parameters. Six sediment samples were collected from locations that presented clear signs of pollution. The environment was predominantly anaerobic and fermentation occurred at all sites. Forty-two species of foraminifera were identified. The dominant species were Ammonia tepida and Arenoparrella mexicana, which are known to be opportunistic, and able to adapt to rapidly changing conditions. CCA analyses showed that salinity and organic matter, followed by bacterial carbon, were more strongly linked to organism distribution in the Potengi River Estuary. Dissolved oxygen concentration, temperature and total organic matter were higher at the estuary mouth than at the other sites, creating favorable conditions for foraminiferal growth and allowing the faunistic succession on the upper estuary. As foraminifera assemblages when associated to environmental parameters can be used as efficient proxies for environmental diagnosis, these results suggest that the Potengi Estuary is under great stress from the surrounding urban development.

A Novel Extracellular Gut Symbiont in the Marine Worm Priapulus caudatus (Priapulida) Reveals an Alphaproteobacterial Symbiont Clade of the Ecdysozoa

OpenAIRE

Kroer, Paul; Kjeldsen, Kasper U.; Nyengaard, Jens R.; Schramm, Andreas; Funch, Peter

2016-01-01

Priapulus caudatus (phylum Priapulida) is a benthic marine predatory worm with a cosmopolitan distribution. In its digestive tract we detected symbiotic bacteria that were consistently present in specimens collected over eight years from three sites at the Swedish west coast. Based on their 16S rRNA gene sequence, these symbionts comprise a novel genus of the order Rickettsiales (Alphaproteobacteria). Electron microscopy and fluorescence in situ hybridization (FISH) identified them as extrace...

Rare symbionts may contribute to the resilience of coral–algal assemblages

KAUST Repository

Ziegler, Maren

2017-12-01

The association between corals and photosynthetic dinoflagellates (Symbiodinium spp.) is the key to the success of reef ecosystems in highly oligotrophic environments, but it is also their Achilles‘ heel due to its vulnerability to local stressors and the effects of climate change. Research during the last two decades has shaped a view that coral host–Symbiodinium pairings are diverse, but largely exclusive. Deep sequencing has now revealed the existence of a rare diversity of cryptic Symbiodinium assemblages within the coral holobiont, in addition to one or a few abundant algal members. While the contribution of the most abundant resident Symbiodinium species to coral physiology is widely recognized, the significance of the rare and low abundant background Symbiodinium remains a matter of debate. In this study, we assessed how coral–Symbiodinium communities assemble and how rare and abundant components together constitute the Symbiodinium community by analyzing 892 coral samples comprising >110 000 unique Symbiodinium ITS2 marker gene sequences. Using network modeling, we show that host–Symbiodinium communities assemble in non-random ‘clusters‘ of abundant and rare symbionts. Symbiodinium community structure follows the same principles as bacterial communities, for which the functional significance of rare members (the ‘rare bacterial biosphere’) has long been recognized. Importantly, the inclusion of rare Symbiodinium taxa in robustness analyses revealed a significant contribution to the stability of the host–symbiont community overall. As such, it highlights the potential functions rare symbionts may provide to environmental resilience of the coral holobiont.

Arsenophonus and Sodalis Symbionts in Louse Flies: an Analogy to the Wigglesworthia and Sodalis System in Tsetse Flies.

Science.gov (United States)

Nováková, Eva; Husník, Filip; Šochová, Eva; Hypša, Václav

2015-09-01

Symbiosis between insects and bacteria result in a variety of arrangements, genomic modifications, and metabolic interconnections. Here, we present genomic, phylogenetic, and morphological characteristics of a symbiotic system associated with Melophagus ovinus, a member of the blood-feeding family Hippoboscidae. The system comprises four unrelated bacteria representing different stages in symbiosis evolution, from typical obligate mutualists inhabiting bacteriomes to freely associated commensals and parasites. Interestingly, the whole system provides a remarkable analogy to the association between Glossina and its symbiotic bacteria. In both, the symbiotic systems are composed of an obligate symbiont and two facultative intracellular associates, Sodalis and Wolbachia. In addition, extracellular Bartonella resides in the gut of Melophagus. However, the phylogenetic origins of the two obligate mutualist symbionts differ. In Glossina, the mutualistic Wigglesworthia appears to be a relatively isolated symbiotic lineage, whereas in Melophagus, the obligate symbiont originated within the widely distributed Arsenophonus cluster. Although phylogenetically distant, the two obligate symbionts display several remarkably similar traits (e.g., transmission via the host's "milk glands" or similar pattern of genome reduction). To obtain better insight into the biology and possible role of the M. ovinus obligate symbiont, "Candidatus Arsenophonus melophagi," we performed several comparisons of its gene content based on assignments of the Cluster of Orthologous Genes (COG). Using this criterion, we show that within a set of 44 primary and secondary symbionts, "Ca. Arsenophonus melophagi" is most similar to Wigglesworthia. On the other hand, these two bacteria also display interesting differences, such as absence of flagellar genes in Arsenophonus and their presence in Wigglesworthia. This finding implies that a flagellum is not essential for bacterial transmission via milk glands

Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

NARCIS (Netherlands)

Petersen, J.M.; Kemper, A.; Gruber-Vodicka, H.R.; Cardini, U.; van der Geest, M.; Kleiner, M.; Bulgheresi, S.; Mußmann, M; Herbold, C.W.; Seah, B.K.B.; Antony, C.P.; Liu, D.; Belitz, A.; Weber, M.

2016-01-01

Chemosynthetic symbioses are partnerships between invertebrate animals and chemosynthetic bacteria. The latter are theprimary producers, providing most of the organic carbon needed for the animal host’s nutrition. We sequenced genomesof the chemosynthetic symbionts from the lucinid bivalve Loripes

Ground-truthing the Foraminifera-bound Nitrogen Isotope Paleo-proxy in the Modern Sargasso Sea

Science.gov (United States)

Smart, S.; Ren, H. A.; Fawcett, S. E.; Conte, M. H.; Rafter, P. A.; Ellis, K. K.; Weigand, M. A.; Sigman, D. M.

2016-02-01

We present the nitrogen isotope ratios (δ15N) of planktonic foraminifera, a type of calcifying zooplankton, collected from surface ocean net tows, moored sediment traps and core-top sediments at the Bermuda Atlantic Time-series Study site in the Sargasso Sea between 2009 and 2013. Consistent with previous measurements from low-latitude core-top sediments, the annually averaged δ15N of organic matter bound within the shells of euphotic zone-dwelling foraminifera approximates that of thermocline nitrate, the dominant source of new nitrogen to Sargasso Sea surface waters. Based on net tow collections in the upper 200 m of the water column, we observe no systematic difference between the biomass δ15N and shell-bound δ15N of a given foraminifera species. For multiple species, the δ15N of net tow-collected upper ocean shells is lower than shells from sediment traps (by 0.5-2.1‰) and lower than shells from seafloor sediments (by 0.5-1.4‰). We are currently investigating whether these differences reflect actual processes affecting shell-bound δ15N or instead relate to the different time periods over which the three sample types integrate. The foraminiferal biomass δ15N time-series from the surface Sargasso Sea exhibits significant seasonal variations, with the lowest values in fall and the highest values in spring. The roles of hydrography, biogeochemistry, and ecosystem dynamics in driving these seasonal variations will be discussed. These data from the modern subtropical ocean form part of a greater effort to ground-truth the use of foram-bound δ15N to reconstruct past nutrient conditions, not only as a recorder of the isotopic composition of nitrogen supply in oligotrophic environments but also as a recorder of the degree of nitrate consumption in high-latitude regions such as the Southern Ocean.

A nuptially transmitted Ichthyosproean symbiont of Tenebrio molitor (Coleoptera: Tenebrionidae)

Science.gov (United States)

The yellow mealworm, Tenebrio molitor, harbors a symbiont that has spores with a thick, laminated wall and infects the fat body and ventral nerve chord of adult and larval beetles. In adult males, there is heavy infection of the epithelial cells of the testes and between testes lobes with occasional...

Characterization and role of p53 family members in the symbiont-induced morphogenesis of the Euprymna scolopes light organ.

Science.gov (United States)

Goodson, Michael S; Crookes-Goodson, Wendy J; Kimbell, Jennifer R; McFall-Ngai, Margaret J

2006-08-01

Within hours of hatching, the squid Euprymna scolopes forms a specific light organ symbiosis with the marine luminous bacterium Vibrio fischeri. Interactions with the symbiont result in the loss of a complex ciliated epithelium dedicated to promoting colonization of host tissue, and some or all of this loss is due to widespread, symbiont-induced apoptosis. Members of the p53 family, including p53, p63, and p73, are conserved across broad phyletic lines and p63 is thought to be the ancestral gene. These proteins have been shown to induce apoptosis and developmental morphogenesis. In this study, we characterized p63-like transcripts from mRNA isolated from the symbiotic tissues of E. scolopes and described their role in symbiont-induced morphogenesis. Using degenerate RT-PCR and RACE PCR, we identified two p63-like transcripts encoding proteins of 431 and 567 amino acids. These transcripts shared identical nucleotides where they overlapped, suggesting that they are splice variants of the same gene. Immunocytochemistry and Western blots using an antibody specific for E. scolopes suggested that the p53 family members are activated in cells of the symbiont-harvesting structures of the symbiotic light organ. We propose that once the symbiosis is initiated, a symbiont-induced signal activates p53 family members, inducing apoptosis and developmental morphogenesis of the light organ.

Pyrosequencing of bacterial symbionts within Axinella corrugata sponges: diversity and seasonal variability.

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James R White

Full Text Available BACKGROUND: Marine sponge species are of significant interest to many scientific fields including marine ecology, conservation biology, genetics, host-microbe symbiosis and pharmacology. One of the most intriguing aspects of the sponge "holobiont" system is the unique physiology, interaction with microbes from the marine environment and the development of a complex commensal microbial community. However, intraspecific variability and temporal stability of sponge-associated bacterial symbionts remain relatively unknown. METHODOLOGY/PRINCIPAL FINDINGS: We have characterized the bacterial symbiont community biodiversity of seven different individuals of the Caribbean reef sponge Axinella corrugata, from two different Florida reef locations during variable seasons using multiplex 454 pyrosequencing of 16 S rRNA amplicons. Over 265,512 high-quality 16 S rRNA sequences were generated and analyzed. Utilizing versatile bioinformatics methods and analytical software such as the QIIME and CloVR packages, we have identified 9,444 distinct bacterial operational taxonomic units (OTUs. Approximately 65,550 rRNA sequences (24% could not be matched to bacteria at the class level, and may therefore represent novel taxa. Differentially abundant classes between seasonal Axinella communities included Gammaproteobacteria, Flavobacteria, Alphaproteobacteria, Cyanobacteria, Acidobacter and Nitrospira. Comparisons with a proximal outgroup sponge species (Amphimedon compressa, and the growing sponge symbiont literature, indicate that this study has identified approximately 330 A. corrugata-specific symbiotic OTUs, many of which are related to the sulfur-oxidizing Ectothiorhodospiraceae. This family appeared exclusively within A. corrugata, comprising >34.5% of all sequenced amplicons. Other A. corrugata symbionts such as Deltaproteobacteria, Bdellovibrio, and Thiocystis among many others are described. CONCLUSIONS/SIGNIFICANCE: Slight shifts in several bacterial taxa

Methodology for single-cell genetic analysis of planktonic foraminifera for studies of protist diversity and evolution

Directory of Open Access Journals (Sweden)

Agnes Katharina Maria Weiner

2016-12-01

Full Text Available Single-cell genetic analysis is an essential method to investigate the biodiversity and evolutionary ecology of marine protists. In protist groups that do not reproduce under laboratory conditions, this approach provides the only means to directly associate molecular sequences with cell morphology. The resulting unambiguous taxonomic identification of the DNA sequences is a prerequisite for barcoding and analyses of environmental metagenomic data. Extensive single-cell genetic studies have been carried out on planktonic foraminifera over the past 20 years to elucidate their phylogeny, cryptic diversity, biogeography and the relationship between genetic and morphological variability. In the course of these investigations, it has become evident that genetic analysis at the individual specimen level is confronted by innumerable challenges ranging from the negligible amount of DNA present in the single cell to the substantial amount of DNA contamination introduced by endosymbionts or food particles. Consequently, a range of methods has been developed and applied throughout the years for the genetic analysis of planktonic foraminifera in order to enhance DNA amplification success rates. Yet, the description of these methods in the literature rarely occurred with equivalent levels of detail and the different approaches have never been compared in terms of their efficiency and reproducibility. Here, aiming at a standardization of methods, we provide a comprehensive review of all methods that have been employed for the single-cell genetic analysis of planktonic foraminifera. We compile data on success rates of DNA amplification and use these to evaluate the effects of key parameters associated with the methods of sample collection, storage and extraction of single-cell DNA. We show that the chosen methods influence the success rates of single-cell genetic studies, but the differences between them are not sufficient to hinder comparisons between studies

Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum

KAUST Repository

Chen, Jit Ern; Cui, Guoxin; Wang, Xin; Liew, Yi Jin; Aranda, Manuel

2017-01-01

Rising sea surface temperature is the main cause of global coral reef decline. Abnormally high temperatures trigger the breakdown of the symbiotic association between corals and their photosynthetic symbionts in the genus Symbiodinium. Higher

Marine connections of Amazonia: Evidence from foraminifera and dinoflagellate cysts (early to middle Miocene, Colombia/Peru)

NARCIS (Netherlands)

Boonstra, M.; Ramos, M.I.F.; Lammertsma, E.I.; Antoine, P.-O; Hoorn, C.

2015-01-01

Species composition in the present-day Amazonian heartland has an imprint of past marine influence. The exact nature, timing and extent of this marine influence, however, are largely unresolved. Here we use calcareous tests of foraminifera and marine palynomorphs from Miocene sediments in

Gene expression in gut symbiotic organ of stinkbug affected by extracellular bacterial symbiont.

Science.gov (United States)

Futahashi, Ryo; Tanaka, Kohjiro; Tanahashi, Masahiko; Nikoh, Naruo; Kikuchi, Yoshitomo; Lee, Bok Luel; Fukatsu, Takema

2013-01-01

The bean bug Riptortus pedestris possesses a specialized symbiotic organ in a posterior region of the midgut, where numerous crypts harbor extracellular betaproteobacterial symbionts of the genus Burkholderia. Second instar nymphs orally acquire the symbiont from the environment, and the symbiont infection benefits the host by facilitating growth and by occasionally conferring insecticide resistance. Here we performed comparative transcriptomic analyses of insect genes expressed in symbiotic and non-symbiotic regions of the midgut dissected from Burkholderia-infected and uninfected R. pedestris. Expression sequence tag analysis of cDNA libraries and quantitative reverse transcription PCR identified a number of insect genes expressed in symbiosis- or aposymbiosis-associated patterns. For example, genes up-regulated in symbiotic relative to aposymbiotic individuals, including many cysteine-rich secreted protein genes and many cathepsin protease genes, are likely to play a role in regulating the symbiosis. Conversely, genes up-regulated in aposymbiotic relative to symbiotic individuals, including a chicken-type lysozyme gene and a defensin-like protein gene, are possibly involved in regulation of non-symbiotic bacterial infections. Our study presents the first transcriptomic data on gut symbiotic organ of a stinkbug, which provides initial clues to understanding of molecular mechanisms underlying the insect-bacterium gut symbiosis and sheds light on several intriguing commonalities between endocellular and extracellular symbiotic associations.

Moving beyond the age-depth model paradigm in deep-sea palaeoclimate archives: dual radiocarbon and stable isotope analysis on single foraminifera

Science.gov (United States)

Lougheed, Bryan C.; Metcalfe, Brett; Ninnemann, Ulysses S.; Wacker, Lukas

2018-04-01

Late-glacial palaeoclimate reconstructions from deep-sea sediment archives provide valuable insight into past rapid changes in ocean chemistry. Unfortunately, only a small proportion of the ocean floor with sufficiently high sediment accumulation rate (SAR) is suitable for such reconstructions using the long-standing age-depth model approach. We employ ultra-small radiocarbon (14C) dating on single microscopic foraminifera to demonstrate that the long-standing age-depth model method conceals large age uncertainties caused by post-depositional sediment mixing, meaning that existing studies may underestimate total geochronological error. We find that the age-depth distribution of our 14C-dated single foraminifera is in good agreement with existing bioturbation models only after one takes the possibility of Zoophycos burrowing into account. To overcome the problems associated with the age-depth paradigm, we use the first ever dual 14C and stable isotope (δ18O and δ13C) analysis on single microscopic foraminifera to produce a palaeoclimate time series independent of the age-depth paradigm. This new state of the art essentially decouples single foraminifera from the age-depth paradigm to provide multiple floating, temporal snapshots of ocean chemistry, thus allowing for the successful extraction of temporally accurate palaeoclimate data from low-SAR deep-sea archives. This new method can address large geographical gaps in late-glacial benthic palaeoceanographic reconstructions by opening up vast areas of previously disregarded, low-SAR deep-sea archives to research, which will lead to an improved understanding of the global interaction between oceans and climate.

Moving beyond the age–depth model paradigm in deep-sea palaeoclimate archives: dual radiocarbon and stable isotope analysis on single foraminifera

Directory of Open Access Journals (Sweden)

B. C. Lougheed

2018-04-01

Full Text Available Late-glacial palaeoclimate reconstructions from deep-sea sediment archives provide valuable insight into past rapid changes in ocean chemistry. Unfortunately, only a small proportion of the ocean floor with sufficiently high sediment accumulation rate (SAR is suitable for such reconstructions using the long-standing age–depth model approach. We employ ultra-small radiocarbon (14C dating on single microscopic foraminifera to demonstrate that the long-standing age–depth model method conceals large age uncertainties caused by post-depositional sediment mixing, meaning that existing studies may underestimate total geochronological error. We find that the age–depth distribution of our 14C-dated single foraminifera is in good agreement with existing bioturbation models only after one takes the possibility of Zoophycos burrowing into account. To overcome the problems associated with the age–depth paradigm, we use the first ever dual 14C and stable isotope (δ18O and δ13C analysis on single microscopic foraminifera to produce a palaeoclimate time series independent of the age–depth paradigm. This new state of the art essentially decouples single foraminifera from the age–depth paradigm to provide multiple floating, temporal snapshots of ocean chemistry, thus allowing for the successful extraction of temporally accurate palaeoclimate data from low-SAR deep-sea archives. This new method can address large geographical gaps in late-glacial benthic palaeoceanographic reconstructions by opening up vast areas of previously disregarded, low-SAR deep-sea archives to research, which will lead to an improved understanding of the global interaction between oceans and climate.

Complete Genome Sequence of the Human Gut Symbiont Roseburia hominis

DEFF Research Database (Denmark)

Travis, Anthony J.; Kelly, Denise; Flint, Harry J

2015-01-01

We report here the complete genome sequence of the human gut symbiont Roseburia hominis A2-183(T) (= DSM 16839(T) = NCIMB 14029(T)), isolated from human feces. The genome is represented by a 3,592,125-bp chromosome with 3,405 coding sequences. A number of potential functions contributing to host...

Single-Cell Biomolecular Analysis of Coral Algal Symbionts Reveals Opposing Metabolic Responses to Heat Stress and Expulsion

Directory of Open Access Journals (Sweden)

Katherina Petrou

2018-03-01

Full Text Available The success of corals in nutrient poor environments is largely attributed to the symbiosis between the cnidarian host and its intracellular alga. Warm water anomalies have been shown to destabilize this symbiosis, yet detailed analysis of the effect of temperature and expulsion on cell-specific carbon and nutrient allocation in the symbiont is limited. Here, we exposed colonies of the hard coral Acropora millepora to heat stress and using synchrotron-based infrared microspectroscopy measured the biomolecular profiles of individual in hospite and expelled symbiont cells at an acute state of bleaching. Our results showed symbiont metabolic profiles to be remarkably distinct with heat stress and expulsion, where the two effectors elicited opposing metabolic adjustments independent of treatment or cell type. Elevated temperature resulted in biomolecular changes reflecting cellular stress, with relative increases in free amino acids and phosphorylation of molecules and a concomitant decline in protein content, suggesting protein modification and degradation. This contrasted with the metabolic profiles of expelled symbionts, which showed relative decreases in free amino acids and phosphorylated molecules, but increases in proteins and lipids, suggesting expulsion lessens the overall effect of heat stress on the metabolic signature of the algal symbionts. Interestingly, the combined effects of expulsion and thermal stress were additive, reducing the overall shifts in all biomolecules, with the notable exception of the significant accumulation of lipids and saturated fatty acids. This first use of a single-cell metabolomics approach on the coral symbiosis provides novel insight into coral bleaching and emphasizes the importance of a single-cell approach to demark the cell-to-cell variability in the physiology of coral cellular populations.

Comparative Profiling of coral symbiont communities from the Caribbean, Indo-Pacific, and Arabian Seas

KAUST Repository

Arif, Chatchanit

2014-12-01

Coral reef ecosystems are in rapid decline due to global and local anthropogenic factors. Being among the most diverse ecosystems on Earth, a loss will decrease species diversity, and remove food source for people along the coast. The coral together with its symbionts (i.e. Symbiodinium, bacteria, and other microorganisms) is called the ‘coral holobiont’. The coral host offers its associated symbionts suitable habitats and nutrients, while Symbiodinium and coral-associated bacteria provide the host with photosynthates and vital nutrients. Association of corals with certain types of Symbiodinium and bacteria confer coral stress tolerance, and lack or loss of these symbionts coincides with diseased or bleached corals. However, a detailed understanding of the coral holobiont diversity and structure in regard to diseases and health states or across global scales is missing. This dissertation addressed coral-associated symbiont diversity, specifically of Symbiodinium and bacteria, in various coral species from different geographic locations and different health states. The main aims were (1) to expand the scope of existing technologies, (2) to establish a standardized framework to facilitate comparison of symbiont assemblages over coral species and sites, (3) to assess Symbiodinium diversity in the Arabian Seas, and (4) to elucidate whether coral health states have conserved bacterial footprints. In summary, a next generation sequencing pipeline for Symbiodinium diversity typing of the ITS2 marker is developed and applied to describe Symbiodinium diversity in corals around the Arabian Peninsula. The data show that corals in the Arabian Seas are dominated by a single Symbiodinium type, but harbor a rich variety of types in low abundant. Further, association with different Symbiodinium types is structured according to geographic locations. In addition, the application of 16S rRNA gene microarrays to investigate how differences in microbiome structure relate to

A Monograph on the Orbitoididae, occurring in the Tertiary of America

NARCIS (Netherlands)

Geyn, van de W.A.E.; Vlerk, van der I.M.

1935-01-01

Some years ago we received a collection of foraminifera-bearing samples from Dr. H. K. Kugler and Dr. E. Lehner for examination, in sequence to the collection of larger foraminifera already examined from Central Falcon (Venezuela). (See Nettie E. Gorter and I. M. van der Vlerk, L.G.M., Dl. IV, afl.

Late Neogene foraminifera from the northern Namibian continental shelf and the transition to the Benguela Upwelling System

Science.gov (United States)

Bergh, Eugene W.; Compton, John S.; Frenzel, Peter

2018-05-01

Middle Miocene to Plio-Pleistocene foraminifera provide insights into the palaeoenvironment on the northern Namibian continental shelf located at the far northern end of the present-day Benguela Upwelling System (BUS). Biostratigraphy and Strontium Isotope Stratigraphy (SIS) of the recovered basal olive-green mud unit indicate an age of 16 to 14 Ma. A sharp, erosional contact separates the basal mud from the overlying Plio-Pleistocene gravelly pelletal phosphorite sands. Grain size data, P/B ratios and benthic diversity indices indicate a change between the middle Miocene and overlying Plio-Pleistocene palaeoenvironments linked to the timing and conditions associated with the initiation of the BUS. The different lithological units and microfossil assemblages in the olive-green mud unit and the overlying pelletal phosphorite units support the late Miocene initiation of the BUS and the northwards migration of the Angola-Benguela Front. Planktic foraminifera indicate a shift from warmer surface water conditions to cooler conditions during the initiation of the BUS. Benthic palaeobathymetric ranges and P/B ratios are consistent with outer shelf water depths suggesting a deeper palaeoenvironment during the Mid-Miocene Climatic Optimum (MMCO) than today. Benthic foraminifera in the middle Miocene are dominated by large (>1 mm) taxa and adapted to oligotrophic environments before the initiation of the BUS. The benthic assemblage composition indicates that bottom water conditions changed to eutrophic conditions during the Plio-Pleistocene under intensified upwelling conditions.

Host immunostimulation and substrate utilization of the gut symbiont Akkermansia muciniphila

NARCIS (Netherlands)

Ottman, N.A.

2015-01-01

Host immunostimulation and substrate utilization of the gut symbiont Akkermansia muciniphila

Noora A. Ottman

The human gastrointestinal tract is colonized by a complex community of micro-organisms, the gut microbiota. The majority of these

Asymmetric interaction specificity between two sympatric termites and their fungal symbionts.

NARCIS (Netherlands)

Fine Licht, De H.H.; Boomsma, J.J.

2007-01-01

1. Fungus-growing termites live in an obligate mutualistic symbiosis with Termitomyces fungi. The functions of the fungal symbiont have been hypothesised to differ between species and to range from highly specific roles of providing plant-degrading enzymes complementary to termite gut enzymes, to

Distribution of planktonic foraminifera in waters of the submarine coral banks in southeast Arabian Sea during winter

Digital Repository Service at National Institute of Oceanography (India)

Rao, K.K.; Jayalakshmy, K.V.; Balasubramanian, T.

Twentyfive species of planktonic foraminifera are recorded from 36 plankton tows collected from waters of the submerged coral banks- Bassas de Pedro, Sesostris and Cora Divh-located at northern end of the Laccadive group of islands in southeastern...

Growth, chamber building rate and reproduction time of Palaeonummulites venosus (Foraminifera) under natural conditions

Science.gov (United States)

Kinoshita, Shunichi; Eder, Wolfgang; Wöger, Julia; Hohenegger, Johann; Briguglio, Antonino

2017-12-01

We investigated the symbiont-bearing benthic foraminifer Palaeonummulites venosus to determine the chamber building rate (CBR), test diameter increase rate (DIR), reproduction time and longevity using the `natural laboratory' approach. This is based on the decomposition of monthly obtained frequency distributions of chamber number and test diameter into normally distributed components. Test measurements were taken using MicroCT. The shift of the mean and standard deviation of component parameters during the 15-month investigation period was used to calculate Michaelis-Menten functions applied to estimate the averaged CBR and DIR under natural conditions. The individual dates of birth were estimated using the inverse averaged CBR and the inverse DIR fitted by the individual chamber number or the individual test diameter at the sampling date. Distributions of frequencies and densities (i.e., frequency divided by sediment weight) based on both CBR and DIR revealed continuous reproduction throughout the year with two peaks, a stronger one in June determined as the onset of the summer generation (generation 1) and a weaker one in November determined as the onset of the winter generation (generation 2). This reproduction scheme explains the presence of small and large specimens in the same sample. Longevity, calculated as the maximum difference in days between the individual's birth date and the sampling date, is approximately 1.5 yr, an estimation obtained by using both CBR and DIR.

Preferential host switching and codivergence shaped radiation of bark beetle symbionts, nematodes of Micoletzkya (Nematoda: Diplogastridae).

Science.gov (United States)

Susoy, V; Herrmann, M

2014-05-01

Host-symbiont systems are of particular interest to evolutionary biology because they allow testable inferences of diversification processes while also providing both a historical basis and an ecological context for studies of adaptation. Our investigations of bark beetle symbionts, predatory nematodes of the genus Micoletzkya, have revealed remarkable diversity of the group along with a high level of host specificity. Cophylogenetic analyses suggest that evolution of the nematodes was largely influenced by the evolutionary history of beetles. The diversification of the symbionts, however, could not be attributed to parallel divergence alone; our results indicate that adaptive radiation of the nematodes was shaped by preferential host shifts among closely related beetles along with codivergence. Whereas ecological and geographic isolation have played a major role in the diversification of Micoletzkya at shallow phylogenetic depths, adaptations towards related hosts have played a role in shaping cophylogenetic structure at a larger evolutionary scale. © 2014 The Authors. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

A New Niche for Vibrio logei, the Predominant Light Organ Symbiont of Squids in the Genus Sepiola

OpenAIRE

Fidopiastis, Pat M.; von Boletzky, Sigurd; Ruby, Edward G.

1998-01-01

Two genera of sepiolid squids—Euprymna, found primarily in shallow, coastal waters of Hawaii and the Western Pacific, and Sepiola, the deeper-, colder-water-dwelling Mediterranean and Atlantic squids—are known to recruit luminous bacteria into light organ symbioses. The light organ symbiont of Euprymna spp. is Vibrio fischeri, but until now, the light organ symbionts of Sepiola spp. have remained inadequately identified. We used a combination of molecular and physiological characteristics to ...

Insights into deep-sea adaptations and host-symbiont interactions: A comparative transcriptome study on Bathymodiolus mussels and their coastal relatives.

Science.gov (United States)

Zheng, Ping; Wang, Minxiao; Li, Chaolun; Sun, Xiaoqing; Wang, Xiaocheng; Sun, Yan; Sun, Song

2017-10-01

Mussels (Bivalve: Mytilidae) have adapted to various habitats, from fresh water to the deep sea. To understand their adaptive characteristics in different habitats, particularly in the bathymodiolin mussels in deep-sea chemosynthetic ecosystems, we conducted a comparative transcriptomic analysis between deep-sea bathymodiolin mussels and their shallow-water relatives. A number of gene families related to stress responses were shared across all mussels, without specific or significantly expanded families in deep-sea species, indicating that all mussels are capable of adapting to diverse harsh environments, but that different members of the same gene family may be preferentially utilized by different species. One of the most extraordinary trait of bathymodiolin mussels is their endosymbiosis. Lineage-specific and positively selected TLRs and highly expressed C1QDC proteins were identified in the gills of the bathymodiolins, suggesting their possible functions in symbiont recognition. However, pattern recognition receptors of the bathymodiolins were globally reduced, facilitating the invasion and maintenance of the symbionts obtained by either endocytosis or phagocytosis. Additionally, various transporters were positively selected or more highly expressed in the deep-sea mussels, indicating a means by which necessary materials could be provided for the symbionts. Key genes supporting lysosomal activity were also positively selected or more highly expressed in the deep-sea mussels, suggesting that nutrition fixed by the symbionts can be absorbed in a "farming" way wherein the symbionts are digested by lysosomes. Regulation of key physiological processes including lysosome activity, apoptosis and immune reactions is needed to maintain a stable host-symbiont relationship, but the mechanisms are still unclear. © 2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

Addressing environmental issues through foraminifera – Case studies from the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.

of relict foraminifera in certain environments also helps in deciphering palaeo-sea level conditions (Mazumder, 2004; Panchang et al., communicated). Significant Results: The relative rise and fall of sea level over the time has been studied with the help... and shared or distributed, contributing to balance the economy of the country during the time of crisis. Sufficient or excess rainfall conditions will even improve relationship between the states as well as bordering countries sharing water resources...

Bathymetric preference of four major genera of rectilinear benthic foraminifera within oxygen minimum zone in Arabian Sea off central west coast of India.

Digital Repository Service at National Institute of Oceanography (India)

Mazumder, A.; Nigam, R.

species, including two species of Bolivina and a single species of Uvigerina, with the bathymetrical variation from the northern Gulf of Mexico. But there is no attempt to correlate the total population of any important genus of rectilinear foraminifera...–900. Malakoff D 1998 Death by suffocation in the Gulf of Mexico; Science 281 190–192. Mallon J, Glock N and Scho¨nfeld J 2012 The response of benthic foraminifera to low-oxygen conditions of the Peruvian oxygen minimum zone; In: ANOXIA: Evidence for eukaryote...

Contrasting calcification responses to ocean acidification between two reef foraminifers harboring different algal symbionts

Science.gov (United States)

Hikami, Mana; Ushie, Hiroyuki; Irie, Takahiro; Fujita, Kazuhiko; Kuroyanagi, Azumi; Sakai, Kazuhiko; Nojiri, Yukihiro; Suzuki, Atsushi; Kawahata, Hodaka

2011-10-01

Ocean acidification, which like global warming is an outcome of anthropogenic CO2 emissions, severely impacts marine calcifying organisms, especially those living in coral reef ecosystems. However, knowledge about the responses of reef calcifiers to ocean acidification is quite limited, although coral responses are known to be generally negative. In a culture experiment with two algal symbiont-bearing, reef-dwelling foraminifers, Amphisorus kudakajimensis and Calcarina gaudichaudii, in seawater under five different pCO2 conditions, 245, 375, 588, 763 and 907 μatm, maintained with a precise pCO2-controlling technique, net calcification of A. kudakajimensis was reduced under higher pCO2, whereas calcification of C. gaudichaudii generally increased with increased pCO2. In another culture experiment conducted in seawater in which bicarbonate ion concentrations were varied under a constant carbonate ion concentration, calcification was not significantly different between treatments in Amphisorus hemprichii, a species closely related to A. kudakajimensis, or in C. gaudichaudii. From these results, we concluded that carbonate ion and CO2 were the carbonate species that most affected growth of Amphisorus and Calcarina, respectively. The opposite responses of these two foraminifer genera probably reflect different sensitivities to these carbonate species, which may be due to their different symbiotic algae.

Host tolerance, not symbiont tolerance, determines the distribution of coral species in relation to their environment at a Central Pacific atoll

Science.gov (United States)

Wicks, L. C.; Gardner, J. P. A.; Davy, S. K.

2012-06-01

Tolerance of environmental variables differs between corals and their dinoflagellate symbionts ( Symbiodinium spp.), controlling the holobiont's (host and symbiont combined) resilience to environmental stress. However, the ecological role that environmental variables play in holobiont distribution remains poorly understood. We compared the drivers of symbiont and coral species distributions at Palmyra Atoll, a location with a range of reef environments from low to high sediment concentrations (1-52 g dry weight m-2 day-1). We observed uniform holobiont partnerships across the atoll (e.g. Montipora spp. with Symbiodinium type C15 at all sites). Multivariate analysis revealed that field-based estimates of settling sediment predominantly explained the spatial variation of coral species among sites ( P coral rather than Symbiodinium physiology. The data highlight the importance of host tolerance to environmental stressors, which should be considered simultaneously with symbiont sensitivity when considering the impact of variations in environmental conditions on coral communities.

A nonnative and a native fungal plant pathogen similarly stimulate ectomycorrhizal development but are perceived differently by a fungal symbiont.

Science.gov (United States)

Zampieri, Elisa; Giordano, Luana; Lione, Guglielmo; Vizzini, Alfredo; Sillo, Fabiano; Balestrini, Raffaella; Gonthier, Paolo

2017-03-01

The effects of plant symbionts on host defence responses against pathogens have been extensively documented, but little is known about the impact of pathogens on the symbiosis and if such an impact may differ for nonnative and native pathogens. Here, this issue was addressed in a study of the model system comprising Pinus pinea, its ectomycorrhizal symbiont Tuber borchii, and the nonnative and native pathogens Heterobasidion irregulare and Heterobasidion annosum, respectively. In a 6-month inoculation experiment and using both in planta and gene expression analyses, we tested the hypothesis that H. irregulare has greater effects on the symbiosis than H. annosum. Although the two pathogens induced the same morphological reaction in the plant-symbiont complex, with mycorrhizal density increasing exponentially with pathogen colonization of the host, the number of target genes regulated in T. borchii in plants inoculated with the native pathogen (i.e. 67% of tested genes) was more than twice that in plants inoculated with the nonnative pathogen (i.e. 27% of genes). Although the two fungal pathogens did not differentially affect the amount of ectomycorrhizas, the fungal symbiont perceived their presence differently. The results may suggest that the symbiont has the ability to recognize a self/native and a nonself/nonnative pathogen, probably through host plant-mediated signal transduction. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Metabolite profiling of symbiont and host during thermal stress and bleaching in the coral Acropora aspera

Science.gov (United States)

Hillyer, Katie E.; Dias, Daniel A.; Lutz, Adrian; Wilkinson, Shaun P.; Roessner, Ute; Davy, Simon K.

2017-03-01

Rising seawater temperatures pose a significant threat to the persistence of coral reefs. Despite the importance of these systems, major gaps remain in our understanding of how thermal stress and bleaching affect the metabolic networks that underpin holobiont function. We applied gas chromatography-mass spectrometry (GC-MS) metabolomics to detect changes in the intracellular free metabolite pools (polar and semi-polar compounds) of in hospite dinoflagellate symbionts and their coral hosts (and any associated microorganisms) during early- and late-stage thermal bleaching (a reduction of approximately 50 and 70% in symbiont density, respectively). We detected characteristic changes to the metabolite profiles of each symbiotic partner associated with individual cellular responses to thermal, oxidative and osmotic stress, which progressed with the severity of bleaching. Alterations were also indicative of changes to energy-generating and biosynthesis pathways in both partners, with a shift to the increased catabolism of lipid stores. Specifically, in symbiont intracellular metabolite pools, we observed accumulations of multiple free fatty acids, plus the chloroplast-associated antioxidant alpha-tocopherol. In the host, we detected a decline in the abundance of pools of multiple carbohydrates, amino acids and intermediates, in addition to the antioxidant ascorbate. These findings further our understanding of the metabolic changes that occur to symbiont and host (and its associated microorganisms) during thermal bleaching. These findings also provide further insight into the largely undescribed roles of free metabolite pools in cellular homeostasis, signalling and acclimation to thermal stress in the cnidarian-dinoflagellate symbiosis.

On a grain of sand - a microhabitat for the opportunistic agglutinated foraminifera Hemisphaerammina apta n. sp., from the early Eocene Arctic Ocean

Science.gov (United States)

McNeil, David H.; Neville, Lisa A.

2018-02-01

Hemisphaerammina apta n. sp. is an attached monothalamous agglutinated foraminifera discovered in shelf sediments of the early Eocene Arctic Ocean. It is a simple yet distinctive component of the endemic agglutinated foraminiferal assemblage that colonized the Arctic Ocean after the microfaunal turnover caused by the Paleocene-Eocene Thermal Maximum. Associated foraminifera are characterized by a high percentage of monothalamous species (up to 60 %) and are entirely agglutinated indicating a brackish (mesohaline) early Eocene Arctic Ocean. Hemisphaerammina apta occurs exclusively as individuals attached to fine detrital grains (0.2 to 1.8 mm) of sediment. It is a small species (0.06 to 0.2 mm in diameter), fine-grained, with a low hemispherical profile, no floor across the attachment area, no substantive marginal flange, no internal structures, and no aperture. Lacking an aperture, it apparently propagated and fed through minute (micrometre-sized) interstitial pores in the test wall. Attachment surfaces vary from concave to convex and rough to smooth. Grains for attachment are diverse in shape and type but are predominantly of quartz and chert. The presence of H. apta in the early Eocene was an opportunistic response to an environment with an active hydrological system (storm events). Attachment to grains of sand would provide a more stable base on a sea floor winnowed by storm-generated currents. Active transport is indicated by the relative abundance of reworked foraminifera mixed with in situ species. Contemporaneous reworking and colonization by H. apta is suggested by its attachment to a reworked specimen of Cretaceous foraminifera.

Genetic connectivity between north and south Mid-Atlantic Ridge chemosynthetic bivalves and their symbionts.

Directory of Open Access Journals (Sweden)

Karina van der Heijden

Full Text Available Transform faults are geological structures that interrupt the continuity of mid-ocean ridges and can act as dispersal barriers for hydrothermal vent organisms. In the equatorial Atlantic Ocean, it has been hypothesized that long transform faults impede gene flow between the northern and the southern Mid-Atlantic Ridge (MAR and disconnect a northern from a southern biogeographic province. To test if there is a barrier effect in the equatorial Atlantic, we examined phylogenetic relationships of chemosynthetic bivalves and their bacterial symbionts from the recently discovered southern MAR hydrothermal vents at 5°S and 9°S. We examined Bathymodiolus spp. mussels and Abyssogena southwardae clams using the mitochondrial cytochrome c oxidase subunit I (COI gene as a phylogenetic marker for the hosts and the bacterial 16S rRNA gene as a marker for the symbionts. Bathymodiolus spp. from the two southern sites were genetically divergent from the northern MAR species B. azoricus and B. puteoserpentis but all four host lineages form a monophyletic group indicating that they radiated after divergence from their northern Atlantic sister group, the B. boomerang species complex. This suggests dispersal of Bathymodiolus species from north to south across the equatorial belt. 16S rRNA genealogies of chemoautotrophic and methanotrophic symbionts of Bathymodiolus spp. were inconsistent and did not match the host COI genealogy indicating disconnected biogeography patterns. The vesicomyid clam Abyssogena southwardae from 5°S shared an identical COI haplotype with A. southwardae from the Logatchev vent field on the northern MAR and their symbionts shared identical 16S phylotypes, suggesting gene flow across the Equator. Our results indicate genetic connectivity between the northern and southern MAR and suggest that a strict dispersal barrier does not exist.

Identification and characterization of bacterial symbionts in three species of filth fly parasitoids.

Science.gov (United States)

Betelman, Kfir; Caspi-Fluger, Ayelet; Shamir, Maayan; Chiel, Elad

2017-09-01

Facultative bacterial symbionts are widespread among insects and have diverse effects on their biology. Here, we focused on bacterial symbionts of three ecologically and economically important filth flies parasitoid species-Spalangia cameroni, Spalangia endius and Muscidifurax raptor. Both Spalangia species harbored a Sodalis bacterium that is closely related to Spalangia praecaptivus (a free-living bacterium) and to Sodalis symbionts of weevils. This is the only case of Sodalis infection in the important order Hymenoptera. We also found, for the first time in this parasitoid guild, a Rickettsia infecting the two Spalangia spp., albeit in much higher prevalence in S. cameroni. Molecular and phylogenetic analyses revealed that it is closely related to Rickettsia felis and other Rickettsia species from the 'transitional' group. All three parasitoid species harbored Wolbachia. Using multi-locus sequence typing, we found that M. raptor harbors a single Wolbachia strain whereas the Spalangia spp. have multiple strains. By controlled crossings, we found that Wolbachia infection in S. endius causes incomplete cytoplasmic incompatibility and increased longevity, thereby promoting Wolbachia's spread. In contrast, no effects of Wolbachia on the reproduction and longevity of M. raptor were found. This study underscores the diversity and nature of symbiotic interactions between microbes and insects. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

In situ photobiology of corals over large depth ranges: A multivariate analysis on the roles of environment, host, and algal symbiont

NARCIS (Netherlands)

Frade, P.R.; Bongaerts, P.; Winkelhagen, A.J.S.; Tonk, L.; Bak, R.P.M.

2008-01-01

We applied a multivariate analysis to investigate the roles of host and symbiont on the in situ physiological response of genus Madracis holobionts towards light. Across a large depth gradient (5-40 m) and for four Madracis species and three symbiont genotypes, we assessed several variables by

Diachronous ranges of benthonic Foraminifera in the Eocene of Alabama and South Carolina

International Nuclear Information System (INIS)

Willard, G.D.; Fallaw, W.C.; Snipes, D.S.

1994-01-01

Seventeen species of benthonic Foraminifera reported by Bandy (1949) from the Eocene of Little Stave Creek in Clarke County, Alabama were identified from the middle eocene Santee Limestone and the upper Eocene Dry Branch Formation in Aiken and Barnwell counties, South Carolina. Of the 17 species, seven occurred in South Carolina stratigraphically above or below the ranges listed by Bandy. Bandy made a detailed study of Foraminifera from the Claibornian and Jacksonian Tallahatta, Lisbon, Gosport, Moodys Branch, and Yazoo formations exposed on Little Stave Creek and plotted the stratigraphic ranges within the section of numerous species. The authors' samples came from well cores at the Savannah River Site in South Carolina. Of 13 species from the middle Eocene Santee and also reported by Bandy, four are stratigraphically below the lowest occurrence listed by Bandy, and one is stratigraphically above the highest occurrence. Of four species from the upper Eocene Dry Branch Formation and also listed by Bandy, two are stratigraphically above his highest occurrence. Dockery and Nystrom (1992) and Campbell (1993) have described diachroneity among mollusks in the Eocene of South Carolina. Caution should be used in relying on a small number of species in correlating Eocene deposits in the Atlantic and Gulf coastal plains

Riptortus pedestris and Burkholderia symbiont: an ideal model system for insect-microbe symbiotic associations.

Science.gov (United States)

Takeshita, Kazutaka; Kikuchi, Yoshitomo

2017-04-01

A number of insects establish symbiotic associations with beneficial microorganisms in various manners. The bean bug Riptortus pedestris and allied stink bugs possess an environmentally acquired Burkholderia symbiont in their midgut crypts. Unlike other insect endosymbionts, the Burkholderia symbiont is easily culturable and genetically manipulatable outside the host. In conjunction with the experimental advantages of the host insect, the Riptortus-Burkholderia symbiosis is an ideal model system for elucidating the molecular bases underpinning insect-microbe symbioses, which opens a new window in the research field of insect symbiosis. This review summarizes current knowledge of this system and discusses future perspectives. Copyright © 2016 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Evidence of environmental and vertical transmission of Burkholderia symbionts in the oriental chinch bug, Cavelerius saccharivorus (Heteroptera: Blissidae).

Science.gov (United States)

Itoh, Hideomi; Aita, Manabu; Nagayama, Atsushi; Meng, Xian-Ying; Kamagata, Yoichi; Navarro, Ronald; Hori, Tomoyuki; Ohgiya, Satoru; Kikuchi, Yoshitomo

2014-10-01

The vertical transmission of symbiotic microorganisms is omnipresent in insects, while the evolutionary process remains totally unclear. The oriental chinch bug, Cavelerius saccharivorus (Heteroptera: Blissidae), is a serious sugarcane pest, in which symbiotic bacteria densely populate the lumen of the numerous tubule-like midgut crypts that the chinch bug develops. Cloning and sequence analyses of the 16S rRNA genes revealed that the crypts were dominated by a specific group of bacteria belonging to the genus Burkholderia of the Betaproteobacteria. The Burkholderia sequences were distributed into three distinct clades: the Burkholderia cepacia complex (BCC), the plant-associated beneficial and environmental (PBE) group, and the stinkbug-associated beneficial and environmental group (SBE). Diagnostic PCR revealed that only one of the three groups of Burkholderia was present in ∼89% of the chinch bug field populations tested, while infections with multiple Burkholderia groups within one insect were observed in only ∼10%. Deep sequencing of the 16S rRNA gene confirmed that the Burkholderia bacteria specifically colonized the crypts and were dominated by one of three Burkholderia groups. The lack of phylogenetic congruence between the symbiont and the host population strongly suggested host-symbiont promiscuity, which is probably caused by environmental acquisition of the symbionts by some hosts. Meanwhile, inspections of eggs and hatchlings by diagnostic PCR and egg surface sterilization demonstrated that almost 30% of the hatchlings vertically acquire symbiotic Burkholderia via symbiont-contaminated egg surfaces. The mixed strategy of symbiont transmission found in the oriental chinch bug might be an intermediate stage in evolution from environmental acquisition to strict vertical transmission in insects. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Expression patterns of mRNAs for methanotrophy and thiotrophy in symbionts of the hydrothermal vent mussel Bathymodiolus puteoserpentis

Science.gov (United States)

Wendeberg, Annelie; Zielinski, Frank U; Borowski, Christian; Dubilier, Nicole

2012-01-01

The hydrothermal vent mussel Bathymodiolus puteoserpentis (Mytilidae) from the Mid-Atlantic Ridge hosts symbiotic sulfur- and methane-oxidizing bacteria in its gills. In this study, we investigated the activity and distribution of these two symbionts in juvenile mussels from the Logatchev hydrothermal vent field (14°45′N Mid-Atlantic Ridge). Expression patterns of two key genes for chemosynthesis were examined: pmoA (encoding subunit A of the particulate methane monooxygenase) as an indicator for methanotrophy, and aprA (encoding the subunit A of the dissimilatory adenosine-5′-phosphosulfate reductase) as an indicator for thiotrophy. Using simultaneous fluorescence in situ hybridization (FISH) of rRNA and mRNA we observed highest mRNA FISH signals toward the ciliated epithelium where seawater enters the gills. The levels of mRNA expression differed between individual specimens collected in a single grab from the same sampling site, whereas no obvious differences in symbiont abundance or distribution were observed. We propose that the symbionts respond to the steep temporal and spatial gradients in methane, reduced sulfur compounds and oxygen by modifying gene transcription, whereas changes in symbiont abundance and distribution take much longer than regulation of mRNA expression and may only occur in response to long-term changes in vent fluid geochemistry. PMID:21734728

Regional variations in the fluxes of foraminifera carbonate, coccolithophorid carbonate and biogenic opal in the northern Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Ramaswamy, V.; Gaye, B.

Mass fluxes of diatom opal, planktonic foraminifera carbonate and coccolithophorid carbonate were measured with time-series sediment traps at six sites in the Arabian Sea, Bay of Bengal and Equatorial Indian Ocean (EIOT). The above fluxes were...

Living benthic Foraminifera from the Saquarema lagoonal system (Rio de Janeiro, southeastern Brazil)

OpenAIRE

Belart, Pierre; Laut, Vanessa; Clemente, Iara; Raposo, Débora; Martins, Virgínia; Frontalini, Fabrizio; Lorini, Maria; Fortes, Rafael; Laut, Lazaro

2017-01-01

Transitional environments such as coastal lagoons with narrow connections to the sea are ecosystems very sensitive to natural or anthropogenic pressures. They are biodiversity hotspots and for this reason it should be studied and preserved. This study lists the benthic Foraminifera species from the Saquarema lagoonal system (SLS), Rio de Janeiro state, Brazil. This complex ecosystem consists of four large connected lagoons, namely Urussanga, Jardim, Boqueirão, and Saquarema. A poorly diversif...

A journey into the wild of the cnidarian model system Aiptasia and its symbionts

KAUST Repository

Voolstra, Christian R.

2013-08-27

The existence of coral reef ecosystems relies critically on the mutualistic relationship between calcifying cnidarians and photosynthetic, dinoflagellate endosymbionts in the genus Symbiodinium. Reef-corals have declined globally due to anthropogenic stressors, for example, rising sea-surface temperatures and pollution that often disrupt these symbiotic relationships (known as coral bleaching), exacerbating mass mortality and the spread of disease. This threatens one of the most biodiverse marine ecosystems providing habitats to millions of species and supporting an estimated 500 million people globally (Hoegh-Guldberg et al. 2007). Our understanding of cnidarian-dinoflagellate symbioses has improved notably with the recent application of genomic and transcriptomic tools (e.g. Voolstra et al. 2009; Bayer et al. 2012; Davy et al. 2012), but a model system that allows for easy manipulation in a laboratory environment is needed to decipher underlying cellular mechanisms important to the functioning of these symbioses. To this end, the sea anemone Aiptasia, otherwise known as a \\'pest\\' to aquarium hobbyists, is emerging as such a model system (Schoenberg & Trench 1980; Sunagawa et al. 2009; Lehnert et al. 2012). Aiptasia is easy to grow in culture and, in contrast to its stony relatives, can be maintained aposymbiotically (i.e. dinoflagellate free) with regular feeding. However, we lack basic information on the natural distribution and genetic diversity of these anemones and their endosymbiotic dinoflagellates. These data are essential for placing the significance of this model system into an ecological context. In this issue of Molecular Ecology, Thornhill et al. (2013) are the first to present genetic evidence on the global distribution, diversity and population structure of Aiptasia and its associated Symbiodinium spp. By integrating analyses of the host and symbiont, this research concludes that the current Aitpasia taxonomy probably needs revision and that two

Planktic foraminiferal photosymbiont bleaching during the Early Eocene Climatic Optimum (Site 1051, northwestern Atlantic)

Science.gov (United States)

Luciani, Valeria; D'Onofrio, Roberta; Dickens, Gerald Roy; Wade, Bridget

2017-04-01

The symbiotic relationship with algae is a key strategy adopted by many modern species and by early Paleogene shallow-dwelling planktic foraminifera. The endosymbionts play an important role in foraminiferal calcification, longevity and growth, allowing the host to succeed in oligotrophic environment. We have indirect evidence on the presence and loss of algae photosymbionts because symbionts modify the chemistry of the microenvironment where a foraminifer calcifies, resulting in a characteristic geochemical signature between test size and δ13C. We present here the result of a test on loss of algal photosymbiont (bleaching) in planktic foraminifera from the northwest Atlantic Ocean Drilling Program (ODP) Site 1051 across the Early Eocene Climatic Optimum (EECO), the interval ( 49-53 Ma) when Earth surface temperatures and probably atmospheric pCO2 reached their Cenozoic maximum. We select this interval because two symbiont-bearing planktic foraminiferal genera Morozovella and Acarinina, that were important calcifiers of the early Paleogene tropical-subtropical oceans, experienced a marked and permanent switch in abundance at the beginning of the EECO, close to the carbon isotope excursion known as J event. Specifically, the relative abundance of Morozovella permanently decreased by at least half, along with a progressive decrease in the number of species. Concomitantly, the genus Acarinina almost doubled its abundance and diversified within the EECO. Many stressors inducing loss of photosymbiosis may have occurred during the long-lasting environmental conditions relating to the EECO extreme warmth, such as high pCO2 and possible decrease of the surface-water pH. The bleaching may therefore represent a potential mechanism to explain the rapid morozovellid decline at the start of the EECO. Our geochemical data from Site 1051 demonstrate that there was indeed a reduction of algal-symbiosis in morozovellids at the EECO beginning. This bleaching event occurred at the

Phylogeographical patterns among Mediterranean sepiolid squids and their Vibrio symbionts: environment drives specificity among sympatric species.

Science.gov (United States)

Zamborsky, D J; Nishiguchi, M K

2011-01-01

Bobtail squid from the genera Sepiola and Rondeletiola (Cephalopoda: Sepiolidae) form mutualistic associations with luminous Gram-negative bacteria (Gammaproteobacteria: Vibrionaceae) from the genera Vibrio and Photobacterium. Symbiotic bacteria proliferate inside a bilobed light organ until they are actively expelled by the host into the surrounding environment on a diel basis. This event results in a dynamic symbiont population with the potential to establish the symbiosis with newly hatched sterile (axenic) juvenile sepiolids. In this study, we examined the genetic diversity found in populations of sympatric sepiolid squid species and their symbionts by the use of nested clade analysis with multiple gene analyses. Variation found in the distribution of different species of symbiotic bacteria suggests a strong influence of abiotic factors in the local environment, affecting bacterial distribution among sympatric populations of hosts. These abiotic factors include temperature differences incurred by a shallow thermocline, as well as a lack of strong coastal water movement accompanied by seasonal temperature changes in overlapping niches. Host populations are stable and do not appear to have a significant role in the formation of symbiont populations relative to their distribution across the Mediterranean Sea. Additionally, all squid species examined (Sepiola affinis, S. robusta, S. ligulata, S. intermedia, and Rondeletiola minor) are genetically distinct from one another regardless of location and demonstrate very little intraspecific variation within species. These findings suggest that physical boundaries and distance in relation to population size, and not host specificity, are important factors in limiting or defining gene flow within sympatric marine squids and their associated bacterial symbionts in the Mediterranean Sea.

PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

Science.gov (United States)

Morard, Raphaël; Darling, Kate F; Mahé, Frédéric; Audic, Stéphane; Ujiié, Yurika; Weiner, Agnes K M; André, Aurore; Seears, Heidi A; Wade, Christopher M; Quillévéré, Frédéric; Douady, Christophe J; Escarguel, Gilles; de Garidel-Thoron, Thibault; Siccha, Michael; Kucera, Michal; de Vargas, Colomban

2015-11-01

Planktonic foraminifera (Rhizaria) are ubiquitous marine pelagic protists producing calcareous shells with conspicuous morphology. They play an important role in the marine carbon cycle, and their exceptional fossil record serves as the basis for biochronostratigraphy and past climate reconstructions. A major worldwide sampling effort over the last two decades has resulted in the establishment of multiple large collections of cryopreserved individual planktonic foraminifera samples. Thousands of 18S rDNA partial sequences have been generated, representing all major known morphological taxa across their worldwide oceanic range. This comprehensive data coverage provides an opportunity to assess patterns of molecular ecology and evolution in a holistic way for an entire group of planktonic protists. We combined all available published and unpublished genetic data to build PFR(2), the Planktonic foraminifera Ribosomal Reference database. The first version of the database includes 3322 reference 18S rDNA sequences belonging to 32 of the 47 known morphospecies of extant planktonic foraminifera, collected from 460 oceanic stations. All sequences have been rigorously taxonomically curated using a six-rank annotation system fully resolved to the morphological species level and linked to a series of metadata. The PFR(2) website, available at http://pfr2.sb-roscoff.fr, allows downloading the entire database or specific sections, as well as the identification of new planktonic foraminiferal sequences. Its novel, fully documented curation process integrates advances in morphological and molecular taxonomy. It allows for an increase in its taxonomic resolution and assures that integrity is maintained by including a complete contingency tracking of annotations and assuring that the annotations remain internally consistent. © 2015 John Wiley & Sons Ltd.

BIOTIC (FORAMINIFERA AND THECAMOEBIANS AND ABIOTIC PARAMETERS AS PROXIES FOR IDENTIFICATION OF THE ENVIRONMENTAL HETEROGENEITY IN CAETÉ RIVER ESTUARY, AMAZON COAST, BRAZIL

Directory of Open Access Journals (Sweden)

Lazaro Luiz Mattos Laut1

2016-01-01

Full Text Available Foraminifera and thecamoebians assemblages were analyzed at Caeté River Estuary in order to identify saline gradients and intensity of human impacts. In the study area, 29 species of foraminifera typically from intertidal environments and 11 species of thecamoebians were identified. The microfaunal assemblages were characterized by low diversity, averaging 1.9 at the mouth and 0.5 near Bragança City. These values are common in transitional coastal environments along de Brazilian Coast. Statistical analysis, based on the relative abundance of species, did not reveal the presence of an estuarine gradient, which was corroborated by the physical and chemical parameters measured in the field. An increasing of sedimentary fine fraction and organic matter occurs in the intermediate region of the estuary, indicating attenuation of the stream influence. The calcareous foraminifera species were associated with high salinity, temperature and pH values. The agglutinated species were associated with muddy sediment, total organic matter and lower salinity. Four environmental compartments were identified based on biotic and abiotic analysis, but they do not represent the classic estuarine gradient, instead, they represent the differences in the freshwater supply and mangrove distance.

Isolation of symbionts and GC-MS analysis of lichens collected from ...

African Journals Online (AJOL)

In Nigeria, a good number of lichen species have been recorded and so far not much work has been done to isolate or identify the symbionts. The utility of lichen comes from a range of secondary compounds produced by them. In view of this, two lichen samples, foliose (Parmalia reticulata Taylor) and fruticose Usnea ...

Evidence of slumping/sliding in Krishna-Godavari offshore basin due to gas/fluid movements

Digital Repository Service at National Institute of Oceanography (India)

Ramprasad, T.; Dewangan, P.; Ramana, M.V.; Mazumdar, A.; Karisiddaiah, S.M.; Ramya, E.R.; Sriram, G.

lithology of mid-slope deposits is comprised of nannofossil-rich clay, nannofossil-bearing clay and foraminifera bearing clay. The HRS records and bathymetry reveal evidence of slumping and sliding of the upper and mid-slope sediments, which result in mass...

Non-native acylated homoserine lactones reveal that LuxIR quorum sensing promotes symbiont stability

Science.gov (United States)

Ho, Jessica S.; Geske, Grant D.; Blackwell, Helen E.; Ruby, Edward G.

2014-01-01

SUMMARY Quorum sensing, a group behavior coordinated by a diffusible pheromone signal and a cognate receptor, is typical of bacteria that form symbioses with plants and animals. LuxIR-type acyl homoserine-lactone (AHL) quorum sensing is common in Gram-negative proteobacteria, and many members of this group have additional quorum-sensing networks. The bioluminescent symbiont Vibrio fischeri encodes two AHL signal synthases: AinS and LuxI. AinS-dependent quorum sensing converges with LuxI-dependent quorum sensing at the LuxR regulatory element. Both AinS- and LuxI-mediated signaling are required for efficient and persistent colonization of the squid host, Euprymna scolopes. The basis of the mutualism is symbiont bioluminescence, which is regulated by both LuxI- and AinS-dependent quorum sensing, and is essential for maintaining a colonization of the host. Here, we used chemical and genetic approaches to probe the dynamics of LuxI- and AinS-mediated regulation of bioluminescence during symbiosis. We demonstrate that both native AHLs and non-native AHL analogs can be used to non-invasively and specifically modulate induction of symbiotic bioluminescence via LuxI-dependent quorum sensing. Our data suggest that the first day of colonization, during which symbiont bioluminescence is induced by LuxIR, is a critical period that determines the stability of the V. fischeri population once symbiosis is established. PMID:24191970

Identifying the cellular mechanisms of symbiont-induced epithelial morphogenesis in the squid-Vibrio association.

Science.gov (United States)

Koropatnick, Tanya; Goodson, Michael S; Heath-Heckman, Elizabeth A C; McFall-Ngai, Margaret

2014-02-01

The symbiotic association between the Hawaiian bobtail squid Euprymna scolopes and the luminous marine bacterium Vibrio fischeri provides a unique opportunity to study epithelial morphogenesis. Shortly after hatching, the squid host harvests bacteria from the seawater using currents created by two elaborate fields of ciliated epithelia on the surface of the juvenile light organ. After light organ colonization, the symbiont population signals the gradual loss of the ciliated epithelia through apoptosis of the cells, which culminates in the complete regression of these tissues. Whereas aspects of this process have been studied at the morphological, biochemical, and molecular levels, no in-depth analysis of the cellular events has been reported. Here we describe the cellular structure of the epithelial field and present evidence that the symbiosis-induced regression occurs in two steps. Using confocal microscopic analyses, we observed an initial epithelial remodeling, which serves to disable the function of the harvesting apparatus, followed by a protracted regression involving actin rearrangements and epithelial cell extrusion. We identified a metal-dependent gelatinolytic activity in the symbiont-induced morphogenic epithelial fields, suggesting the involvement of Zn-dependent matrix metalloproteinase(s) (MMP) in light organ morphogenesis. These data show that the bacterial symbionts not only induce apoptosis of the field, but also change the form, function, and biochemistry of the cells as part of the morphogenic program.

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals.

Science.gov (United States)

Boulotte, Nadine M; Dalton, Steven J; Carroll, Andrew G; Harrison, Peter L; Putnam, Hollie M; Peplow, Lesa M; van Oppen, Madeleine Jh

2016-11-01

Reef-building corals possess a range of acclimatisation and adaptation mechanisms to respond to seawater temperature increases. In some corals, thermal tolerance increases through community composition changes of their dinoflagellate endosymbionts (Symbiodinium spp.), but this mechanism is believed to be limited to the Symbiodinium types already present in the coral tissue acquired during early life stages. Compelling evidence for symbiont switching, that is, the acquisition of novel Symbiodinium types from the environment, by adult coral colonies, is currently lacking. Using deep sequencing analysis of Symbiodinium rDNA internal transcribed spacer 2 (ITS2) PCR amplicons from two pocilloporid coral species, we show evidence consistent with de novo acquisition of Symbiodinium types from the environment by adult corals following two consecutive bleaching events. Most of these newly detected symbionts remained in the rare biosphere (background types occurring below 1% relative abundance), but one novel type reached a relative abundance of ~33%. Two de novo acquired Symbiodinium types belong to the thermally resistant clade D, suggesting that this switching may have been driven by consecutive thermal bleaching events. Our results are particularly important given the maternal mode of Symbiodinium transmission in the study species, which generally results in high symbiont specificity. These findings will cause a paradigm shift in our understanding of coral-Symbiodinium symbiosis flexibility and mechanisms of environmental acclimatisation in corals.

Response of deep-sea benthic foraminifera to Miocene paleoclimatic events, DSDP site 289

International Nuclear Information System (INIS)

Woodruff, F.; Douglas, R.G.

1981-01-01

Changes in the Miocene deep-sea benthic foraminifera at DSDP Site 289 closely correlate to the climatically induced variations in deep and bottom waters in the Pacific Ocean. In early Miocene time, oxygen and carbon isotopes indicate that bottom waters were relatively warm and poorly oxygenated. Benthic foraminiferal assemblages are characterized by various species inherited from the Oligocene. Expansion of the Antarctic icecap in the early middle Miocene, 14-16 m.y. ago, increased oxygen isotope values, produced cold, more oxygenated bottom waters and lead to a turnover in the benthic foraminifera. An Oligocene-early Miocene assemblage was replaced by a cibicidoid-dominated assemblage. Some species became extinct and benthic faunas became more bathymetrically restricted with the increased stratification of deep waters in the ocean. In mid-Miocene time, Epistominella exigua and E. umbonifera, indicative of young, oxygenated bottom waters, are relatively common at DSDP Site 289. Further glacial expansion 5-9 m.y. ago lowered sealevel, increased oceanic upwelling and associated biological productivity and intensified the oxygen minima. Abundant hispid and costate uvigerines become a dominant faunal element at shallow depths above 2500 m as E. umbonifera becomes common to abundant below 2500 m. By late Miocene time, benthic faunas similar in species composition and proportion to modern faunas on the Ontong-Java plateau, had become established. (Auth.)

Biocenoses of benthic foraminifera of the Aveiro Continental Shelf (Portugal: influence of the upwelling events and other shelf processes

Directory of Open Access Journals (Sweden)

Maria Virgínia Alves Martins

2017-03-01

Full Text Available This work aims to compare the dimensions and composition of benthic foraminiferal biocenoses (living specimens during two summer sampling events. Forty-four sediment samples were collected on the Aveiro Continental Shelf (Center of Portugal (latitude of 40º30'N-40º50'N, longitude of 8º46'W-9º20'W for granulometry, total organic matter (TOM and living foraminiferal analyses. The sediment samples were collected during summers of 1994 and 1995, on stations located along transects (east-west direction and between the bathymetries of 10-200 m. During the sampling campaigns, measurements of salinity, temperature and density data were recorded in the water column. The results showed that the living assemblages were mainly found in stations located between 20-80 m depth. The abundance of living foraminifera was generally reduced at depths <20 m in the so-called “coastal deposits”, where the sediments are frequently remobilized and transported by the littoral drift. Living benthic foraminiferal densities were also reduced in stations at 80-200 m depth, despite the high sedimentary TOM contents. Results obtained in this work indicate that, in this marine setting, the most determinant factors for the dimension and composition of living foraminifera are not the sediments’ granulometry and organic matter content. In fact, the coastal dynamics, sediment stability, availability of quality food, among other factors, such as the bottom salinity oscillations and their combination, should better explain the abundance of living foraminifera and the biocenoses composition.

Insight into the genomic diversity and relationship of Astragalus glycyphyllos symbionts by RAPD, ERIC-PCR, and AFLP fingerprinting.

Science.gov (United States)

Gnat, Sebastian; Małek, Wanda; Oleńska, Ewa; Trościańczyk, Aleksandra; Wdowiak-Wróbel, Sylwia; Kalita, Michał; Wójcik, Magdalena

2015-11-01

We assessed the genomic diversity and genomic relationship of 28 Astragalus glycyphyllos symbionts by three methodologies based on PCR reaction, i.e., RAPD, ERIC-PCR, and AFLP. The AFLP method with one PstI restriction enzyme and selective PstI-GC primer pair had a comparable discriminatory power as ERIC-PCR one and these fingerprinting techniques distinguished among the studied 28 A. glycyphyllos symbionts 18 and 17 genomotypes, respectively. RAPD method was less discriminatory in the genomotyping of rhizobia analyzed and it efficiently resolved nine genomotypes. The cluster analysis of RAPD, ERIC-PCR, and AFLP profiles resulted in a generally similar grouping of the test strains on generated dendrograms supporting a great potential of these DNA fingerprinting techniques for study of genomic polymorphism and evolutionary relationship of A. glycyphyllos nodulators. The RAPD, ERIC-PCR, and AFLP pattern similarity coefficients between A. glycyphyllos symbionts studied was in the ranges 8-100, 18-100, and 23-100%, respectively.

Anemone bleaching increases the metabolic demands of symbiont anemonefish.

Science.gov (United States)

Norin, Tommy; Mills, Suzanne C; Crespel, Amélie; Cortese, Daphne; Killen, Shaun S; Beldade, Ricardo

2018-04-11

Increased ocean temperatures are causing mass bleaching of anemones and corals in the tropics worldwide. While such heat-induced loss of algal symbionts (zooxanthellae) directly affects anemones and corals physiologically, this damage may also cascade on to other animal symbionts. Metabolic rate is an integrative physiological trait shown to relate to various aspects of organismal performance, behaviour and locomotor capacity, and also shows plasticity during exposure to acute and chronic stressors. As climate warming is expected to affect the physiology, behaviour and life history of animals, including ectotherms such as fish, we measured if residing in bleached versus unbleached sea anemones ( Heteractis magnifica ) affected the standard (i.e. baseline) metabolic rate and behaviour (activity) of juvenile orange-fin anemonefish ( Amphiprion chrysopterus ) . Metabolic rate was estimated from rates of oxygen uptake [Formula: see text], and the standard metabolic rate [Formula: see text] of anemonefish from bleached anemones was significantly higher by 8.2% compared with that of fish residing in unbleached anemones, possibly due to increased stress levels. Activity levels did not differ between fish from bleached and unbleached anemones. As [Formula: see text] reflects the minimum cost of living, the increased metabolic demands may contribute to the negative impacts of bleaching on important anemonefish life history and fitness traits observed previously (e.g. reduced spawning frequency and lower fecundity). © 2018 The Author(s).

Impacts of Antibiotic and Bacteriophage Treatments on the Gut-Symbiont-Associated Blissus insularis (Hemiptera: Blissidae

Directory of Open Access Journals (Sweden)

Yao Xu

2016-11-01

Full Text Available The Southern chinch bug, Blissus insularis, possesses specialized midgut crypts that harbor dense populations of the exocellular symbiont Burkholderia. Oral administration of antibiotics suppressed the gut symbionts in B. insularis and negatively impacted insect host fitness, as reflected by retarded development, smaller body size, and higher susceptibility to an insecticide, bifenthrin. Considering that the antibiotics probably had non-lethal but toxic effects on host fitness, attempts were conducted to reduce gut symbionts using bacteriophage treatment. Soil-lytic phages active against the cultures of specific Burkholderia ribotypes were successfully isolated using a soil enrichment protocol. Characterization of the BiBurk16MC_R phage determined its specificity to the Bi16MC_R_vitro ribotype and placed it within the family Podoviridae. Oral administration of phages to fifth-instar B. insularis, inoculated with Bi16MC_R_vitro as neonates had no deleterious effects on host fitness. However, the ingested phages failed to impact the crypt-associated Burkholderia. The observed inactivity of the phage was likely due to the blockage of the connection between the anterior and posterior midgut regions. These findings suggest that the initial colonization by Burkholderia programs the ontogeny of the midgut, providing a sheltered residence protected from microbial antagonists.

Facultative symbiont Hamiltonella confers benefits to Bemisia tabaci (Hemiptera: Aleyrodidae), an invasive agricultural pest worldwide.

Science.gov (United States)

Su, Qi; Oliver, Kerry M; Pan, Huipeng; Jiao, Xiaoguo; Liu, Baiming; Xie, Wen; Wang, Shaoli; Wu, Qingjun; Xu, Baoyun; White, Jennifer A; Zhou, Xuguo; Zhang, Youjun

2013-12-01

Bacterial symbionts infect most insect species, including important pests such as whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae), and often exert important effects on host ecology. The facultative symbiont Hamiltonella is found at high frequencies in the B. tabaci MED (type: Mediterranean-MED) in China. The prevalence of this symbiont in natural populations suggests beneficial effects of infection or manipulation of host reproduction. To date, however, no empirical studies on the biological role of Hamiltonella on the host B. tabaci have been reported. Here, we investigated the effects of Hamiltonella infection on the sex ratio and several fitness parameters in B. tabaci MED by comparing Hamiltonella-infected whiteflies with Hamiltonella-free ones. We found that Hamiltonella-infected whiteflies produced significantly more eggs, exhibited significantly higher nymphal survival, faster development times, and larger adult body size in comparison with Hamiltonella-free whiteflies, while no evidence of reproductive manipulation by Hamiltonella were found in B. tabaci MED. In conclusion, Hamiltonella infection substantially enhanced B. tabaci MED performance. This beneficial role may, at least partially, explain the high prevalence of Hamiltonella in B. tabaci MED populations and may also contribute to their effectiveness in spread of the plant pathogens tomato yellow leaf curl virus.

A Brazilian population of the asexual fungus-growing ant Mycocepurus smithii (Formicidae, Myrmicinae, Attini cultivates fungal symbionts with gongylidia-like structures.

Directory of Open Access Journals (Sweden)

Virginia E Masiulionis

Full Text Available Attine ants cultivate fungi as their most important food source and in turn the fungus is nourished, protected against harmful microorganisms, and dispersed by the ants. This symbiosis evolved approximately 50-60 million years ago in the late Paleocene or early Eocene, and since its origin attine ants have acquired a variety of fungal mutualists in the Leucocoprineae and the distantly related Pterulaceae. The most specialized symbiotic interaction is referred to as "higher agriculture" and includes leafcutter ant agriculture in which the ants cultivate the single species Leucoagaricus gongylophorus. Higher agriculture fungal cultivars are characterized by specialized hyphal tip swellings, so-called gongylidia, which are considered a unique, derived morphological adaptation of higher attine fungi thought to be absent in lower attine fungi. Rare reports of gongylidia-like structures in fungus gardens of lower attines exist, but it was never tested whether these represent rare switches of lower attines to L. gonglyphorus cultivars or whether lower attine cultivars occasionally produce gongylidia. Here we describe the occurrence of gongylidia-like structures in fungus gardens of the asexual lower attine ant Mycocepurus smithii. To test whether M. smithii cultivates leafcutter ant fungi or whether lower attine cultivars produce gongylidia, we identified the M. smithii fungus utilizing molecular and morphological methods. Results shows that the gongylidia-like structures of M. smithii gardens are morphologically similar to gongylidia of higher attine fungus gardens and can only be distinguished by their slightly smaller size. A molecular phylogenetic analysis of the fungal ITS sequence indicates that the gongylidia-bearing M. smithii cultivar belongs to the so-called "Clade 1"of lower Attini cultivars. Given that M. smithii is capable of cultivating a morphologically and genetically diverse array of fungal symbionts, we discuss whether asexuality of

The roles and interactions of symbiont, host and environment in defining coral fitness

NARCIS (Netherlands)

Mieog, J.C.; Olsen, J.L.; Berkelmans, R; Bleuler-Martinez, S.A.; Willis, B.; van Oppen, M.J H

2009-01-01

Background: Reef-building corals live in symbiosis with a diverse range of dinoflagellate algae ( genus Symbiodinium) that differentially influence the fitness of the coral holobiont. The comparative role of symbiont type in holobiont fitness in relation to host genotype or the environment, however,

The importance of gut symbionts in the development of the brown marmorated stink bug, Halyomorpha halys (Stål.

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Christopher M Taylor

Full Text Available The invasive brown marmorated stink bug, Halyomorpha halys (Stål, has become a severe agricultural pest and nuisance problem since its introduction in the U.S. Research is being conducted to understand its biology and to find management solutions. Its symbiotic relationship with gut symbionts is one aspect of its biology that is not understood. In the family Pentatomidae, the reliance on gut symbionts for successful development seems to vary depending on the species of stink bug. This research assessed the role of gut symbionts in the development, survivorship, and fecundity of H. halys. We compared various fitness parameters of nymphs and adults reared from surface sterilized and untreated egg masses during two consecutive generations under laboratory conditions. Results provided direct evidence that H. halys is negatively impacted by the prevention of vertical transmission of its gut symbionts and that this impact is significant in the first generation and manifests dramatically in the subsequent generation. Developmental time and survivorship of treated cohorts in the first generation were significantly affected during third instar development through to the adult stage. Adults from the sterilized treatment group exhibited longer pre-oviposition periods, produced fewer egg masses, had significantly smaller clutch sizes, and the hatch rate and survivorship of those eggs were significantly reduced. Observations following hatch of surface sterilized eggs also revealed significant effects on wandering behavior of the first instars. The second generation progeny from adults of the sterilized cohorts showed significantly lower survival to adulthood, averaging only 0.3% compared to 20.8% for the control cohorts. Taken together, results demonstrate that H. halys is heavily impacted by deprival of its gut symbionts. Given the economic status of this invasive pest, further investigations may lead to management tactics that disrupt this close symbiotic

Standing genetic variation in host preference for mutualist microbial symbionts.

Science.gov (United States)

Simonsen, Anna K; Stinchcombe, John R

2014-12-22

Many models of mutualisms show that mutualisms are unstable if hosts lack mechanisms enabling preferential associations with mutualistic symbiotic partners over exploitative partners. Despite the theoretical importance of mutualism-stabilizing mechanisms, we have little empirical evidence to infer their evolutionary dynamics in response to exploitation by non-beneficial partners. Using a model mutualism-the interaction between legumes and nitrogen-fixing soil symbionts-we tested for quantitative genetic variation in plant responses to mutualistic and exploitative symbiotic rhizobia in controlled greenhouse conditions. We found significant broad-sense heritability in a legume host's preferential association with mutualistic over exploitative symbionts and selection to reduce frequency of associations with exploitative partners. We failed to detect evidence that selection will favour the loss of mutualism-stabilizing mechanisms in the absence of exploitation, as we found no evidence for a fitness cost to the host trait or indirect selection on genetically correlated traits. Our results show that genetic variation in the ability to preferentially reduce associations with an exploitative partner exists within mutualisms and is under selection, indicating that micro-evolutionary responses in mutualism-stabilizing traits in the face of rapidly evolving mutualistic and exploitative symbiotic bacteria can occur in natural host populations. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Foraminiferal Range Expansions: The Mediterranean Sea as a natural laboratory for climate induced invasions

Science.gov (United States)

Hortense Mouanga, Gloria; Langer, Martin R.

2015-04-01

Climate change and biological invasions are key processes that modify biodiversity. One of the most severely affected areas of global change is the Mediterranean Sea, where global warming and the opening of the Suez Canal triggered a mass invasion of tropical Red Sea taxa into Mediterranean territories. Climate models prognosticate that the Mediterranean Sea will be one of the most affected ocean regions and may thus serve as a natural laboratory of future global changes. Among the key taxa that are rapidly expanding their latitudinal range in the Mediterranean Sea are symbiont-bearing foraminifera of the genus Amphistegina. Their range expansion strongly correlates with rising sea surface temperatures and mirrors processes of global change. Amphisteginid foraminifera are among the most prolific foraminiferal species and contribute significantly to shallow-water carbonate sediments. Given their prominent environmental role, rapid biogeographic range expansion, and impact on native ecosystems, amphisteginid range expansion and invasion into new territory are likely to trigger changes in ecosystem functioning. Among the uncertainties, it is not known whether all parts of the Mediterranean will be affected equally and to what extent amphisteginid invasions will impact native biotas. We have initiated a new baseline study to explore the effects of invasive amphisteginids on native foraminiferal biotas and to monitor expansion rates and effects on ecosystem functioning along the current range expansion front. We will present new data on recent shift along the range expansion front and discuss cascading effects on community structures and species richness of native foraminiferal biotas. The magnitude and effects that climate change will have on the Mediterranean foraminiferal faunas may ultimately serve as an example of what would happen along expansion fronts in global oceans.

Low planktic foraminiferal diversity and abundance observed in a spring 2013 west-east Mediterranean Sea plankton tow transect

Science.gov (United States)

Mallo, Miguel; Ziveri, Patrizia; Mortyn, P. Graham; Schiebel, Ralf; Grelaud, Michael

2017-05-01

Planktic foraminifera were collected with 150 µm BONGO nets from the upper 200 m water depth at 20 stations across the Mediterranean Sea between 2 May and 2 June 2013. The main aim is to characterize the species distribution and test the covariance between foraminiferal area density (ρA) and seawater carbonate chemistry in a biogeochemical gradient including ultraoligotrophic conditions. Average foraminifera abundances are 1.42 ± 1.43 ind. 10 m-3 (ranging from 0.11 to 5.20 ind. 10 m-3), including 12 morphospecies. Large differences in species assemblages and total abundances are observed between the different Mediterranean sub-basins, with an overall dominance of spinose, symbiont-bearing species indicating oligotrophic conditions. The highest values in absolute abundance are found in the Strait of Gibraltar and the Alboran Sea. The western basin is dominated by Globorotalia inflata and Globigerina bulloides at slightly lower standing stocks than in the eastern basin. In contrast, the planktic foraminiferal assemblage in the warmer, saltier, and more nutrient-limited eastern basin is dominated by Globigerinoides ruber (white). These new results, when combined with previous findings, suggest that temperature-induced surface water stratification and food availability are the main factors controlling foraminiferal distribution. In the oligotrophic and highly alkaline and supersaturated with respect to calcite and aragonite Mediterranean surface water, standing stocks and ρA of G. ruber (white) and G. bulloides are affected by both food availability and seawater carbonate chemistry. Rapid warming increased surface ocean stratification impacting food availability and changes in trophic conditions could be the causes of reduced foraminiferal abundance, diversity, and species-specific changes in planktic foraminiferal calcification.

Benthic foraminifera (Protista) as indicators of metal pollution in areas of historic mining: examples from southwest England

Science.gov (United States)

Hart, Malcolm; Smart, Christopher

2016-04-01

Southwest England has been, from Roman times, an important mining area supplying a range of important metals, including copper, tin, tungsten, arsenic, zinc, silver, etc. This mining activity virtually disappeared in the twentieth century, although one tungsten mine near Plymouth has recently re-opened. Large areas of Cornwall and West Devon are now inscribed as the 'Cornish Mining World Heritage Site' on the cultural list of UNESCO. Many of the old mines with their spoil heaps and tailings dams are now protected and, together with the mineral-rich local geology, provide many catchments with on-going metal pollution. In January 1992, after a period of prolonged, heavy rainfall Wheal Jane mine flooded and discharged heavily polluted, acidic, water into Restonguet Creek and the Fal Estuary. This event provided the setting for a detailed investigation of the immediate impact of the pollution and the resulting environmental improvements caused by engineering interventions and natural re-adjustment. Benthic foraminifera disappeared from Restronguet Creek for a number of years and while there is now an abundant, though low diversity, estuarine assemblage of foraminifera living in the creek there are still high levels (pollution can be used to compare with the test deformity data. In other estuarine systems in southwest England, such as the River Fowey and the River Tamar, levels of deformity are less, though still significant for areas no longer being actively mined. This demonstrates that polluted sediments in all these estuaries, which can be disturbed during floods or times of stormy weather, and the background levels of metal elements in the catchments that supply these estuaries, are sufficient to maintain these levels of deformity in the long term. OLUGBODE, O.I., HART, M.B. & STUBBLES, S.J. 2005. Foraminifera from Restronguet Creek: monitoring recovery from the Wheal Jane pollution incident. Geoscience in south-west England, 11, 82-92.

Foraminifera [Marine Microfossil] as an additional tool for archaeologists - Examples from the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.

or- ganisms, their presence and absence could be a deci- GLIMPSES OF MARINE ARCHAEOLOGY IN INDIA sive factor in interpreting whether any ancient water body was filled with fresh or marine (brackish) water. With this intention, the author has..., a conceptual model (Figure 4) was provided and techniques were developed for use of foraminifera as a proxy to determine the paleomonsoons. Studies on core samples off Karwar (Figure 5), west coast of India showed the clear signals of marked...

Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance.

Science.gov (United States)

LaJeunesse, Todd C; Smith, Robin; Walther, Mariana; Pinzón, Jorge; Pettay, Daniel T; McGinley, Michael; Aschaffenburg, Matthew; Medina-Rosas, Pedro; Cupul-Magaña, Amilcar L; Pérez, Andrés López; Reyes-Bonilla, Hector; Warner, Mark E

2010-10-07

Mutualisms between reef-building corals and endosymbiotic dinoflagellates are particularly sensitive to environmental stress, yet the ecosystems they construct have endured major oscillations in global climate. During the winter of 2008, an extreme cold-water event occurred in the Gulf of California that bleached corals in the genus Pocillopora harbouring a thermally 'sensitive' symbiont, designated Symbiodinium C1b-c, while colonies possessing Symbiodinium D1 were mostly unaffected. Certain bleached colonies recovered quickly while others suffered partial or complete mortality. In most colonies, no appreciable change was observed in the identity of the original symbiont, indicating that these partnerships are stable. During the initial phases of recovery, a third species of symbiont B1(Aiptasia), genetically identical to that harboured by the invasive anemone, Aiptasia sp., grew opportunistically and was visible as light-yellow patches on the branch tips of several colonies. However, this symbiont did not persist and was displaced in all cases by C1b-c several months later. Colonies with D1 were abundant at inshore habitats along the continental eastern Pacific, where seasonal turbidity is high relative to offshore islands. Environmental conditions of the central and southern coasts of Mexico were not sufficient to explain the exclusivity of D1 Pocillopora in these regions. It is possible that mass mortalities associated with major thermal disturbances during the 1997-1998 El Niño Southern Oscillation eliminated C1b-c holobionts from these locations. The differential loss of Pocillopora holobionts in response to thermal stress suggests that natural selection on existing variation can cause rapid and significant shifts in the frequency of particular coral-algal partnerships. However, coral populations may take decades to recover following episodes of severe selection, thereby raising considerable uncertainty about the long-term viability of these communities.

Host–symbiont recombination versus natural selection in the response of coral–dinoflagellate symbioses to environmental disturbance

Science.gov (United States)

LaJeunesse, Todd C.; Smith, Robin; Walther, Mariana; Pinzón, Jorge; Pettay, Daniel T.; McGinley, Michael; Aschaffenburg, Matthew; Medina-Rosas, Pedro; Cupul-Magaña, Amilcar L.; Pérez, Andrés López; Reyes-Bonilla, Hector; Warner, Mark E.

2010-01-01

Mutualisms between reef-building corals and endosymbiotic dinoflagellates are particularly sensitive to environmental stress, yet the ecosystems they construct have endured major oscillations in global climate. During the winter of 2008, an extreme cold-water event occurred in the Gulf of California that bleached corals in the genus Pocillopora harbouring a thermally ‘sensitive’ symbiont, designated Symbiodinium C1b-c, while colonies possessing Symbiodinium D1 were mostly unaffected. Certain bleached colonies recovered quickly while others suffered partial or complete mortality. In most colonies, no appreciable change was observed in the identity of the original symbiont, indicating that these partnerships are stable. During the initial phases of recovery, a third species of symbiont B1Aiptasia, genetically identical to that harboured by the invasive anemone, Aiptasia sp., grew opportunistically and was visible as light-yellow patches on the branch tips of several colonies. However, this symbiont did not persist and was displaced in all cases by C1b-c several months later. Colonies with D1 were abundant at inshore habitats along the continental eastern Pacific, where seasonal turbidity is high relative to offshore islands. Environmental conditions of the central and southern coasts of Mexico were not sufficient to explain the exclusivity of D1 Pocillopora in these regions. It is possible that mass mortalities associated with major thermal disturbances during the 1997–1998 El Niño Southern Oscillation eliminated C1b-c holobionts from these locations. The differential loss of Pocillopora holobionts in response to thermal stress suggests that natural selection on existing variation can cause rapid and significant shifts in the frequency of particular coral–algal partnerships. However, coral populations may take decades to recover following episodes of severe selection, thereby raising considerable uncertainty about the long-term viability of these communities

Benthic foraminifera and heavy metals distribution: A case study from the Naples Harbour (Tyrrhenian Sea, Southern Italy)

International Nuclear Information System (INIS)

Ferraro, L.; Sprovieri, M.; Alberico, I.; Lirer, F.; Prevedello, L.; Marsella, E.

2006-01-01

The analysis of 90 surficial sediments from three docks of the Naples Harbour (Levante, Granili, and Diaz) permits to compare the distribution modes of heavy metals with grain sizes, total organic carbon content (TOC) and distribution patterns of benthic foraminifera. Foraminiferal density and species richness decrease with the increasing toxic elements concentrations from the Levante to the Diaz dock. Median concentrations of Ni, Pb, Zn, and Hg (medians of 21.43 mg/kg, 270.24 mg/kg, 489.65 mg/kg, and 1.18 mg/kg, respectively) were reported for the Diaz dock where foraminifera are absent, thus suggesting a possible impact of toxic elements on the benthic ecosystem balance. Compared to the unpolluted marine sediments of the Granili dock, the Levante area shows higher heavy metals levels and a quasi-oligotypic benthic assemblage. This is dominated by the tolerant species Ammonia tepida that may be used as bio-indicator of pollution of anthropised marine sediments. - Benthic foraminiferal density and species distribution may be used as pollution indicators

Benthic foraminifera distribution in high polluted sediments from Niterói Harbor (Guanabara Bay, Rio de Janeiro, Brazil

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Claudia G. Vilela

2004-03-01

Full Text Available Dockyards and harbors are recognized as being important locations where sediment-associated pollutants can accumulate, which constitutes an environmental risk to aquatic life due to potential uptake and accumulation of heavy metals in the biota. The aim of this paper is to assess the concentrations and the effects of some heavy metals in the benthic foraminifera assemblage in Niterói Harbor. Low concentrations in the benthic foraminifera as well as the dominance of indicative species such as Ammonia tepida, Buliminella elegantissima and Bolivina lowmani can be associated with an environment under stress. In addition, the occurrence of test abnormalities among foraminifera may represent a useful biomarker for evaluating long-term environmental impacts in a coastal region.Estaleiros e portos são locais reconhecidamente importantes onde poluentes associados a sedimentos podem acumular, constituindo um risco ambiental para a vida aquática devido ao potencial de captação e acumulação de metais pesados na biota. O propósito deste trabalho é avaliar as concentrações e os efeitos de alguns metais pesados na assembléia de foraminíferos bentônicos no Porto de Niterói. Baixas concentrações de foraminíferos bentônicos bem como a dominância de espécies indicativas como Ammonia tepida, Buliminella elegantissima e Bolivina lowmani podem ser associadas a um ambiente sob estresse. A ocorrência de anormalidades entre os foraminíferos pode representar um útil biomarcador para avaliação de impactos ambientais de longo termo em uma região costeira.

Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum

KAUST Repository

Chen, Jit Ern

2017-10-20

Rising sea surface temperature is the main cause of global coral reef decline. Abnormally high temperatures trigger the breakdown of the symbiotic association between corals and their photosynthetic symbionts in the genus Symbiodinium. Higher genetic variation resulting from shorter generation times has previously been proposed to provide increased adaptability to Symbiodinium compared to the host. Retrotransposition is a significant source of genetic variation in eukaryotes and some transposable elements are specifically expressed under adverse environmental conditions. We present transcriptomic and phylogenetic evidence for the existence of heat stress-activated Ty1-copia-type LTR retrotransposons in the coral symbiont Symbiodinium microadriaticum. Genome-wide analyses of emergence patterns of these elements further indicate recent expansion events in the genome of S. microadriaticum. Our findings suggest that acute temperature increases can activate specific retrotransposons in the Symbiodinium genome with potential impacts on the rate of retrotransposition and the generation of genetic variation under heat stress.The ISME Journal advance online publication, 20 October 2017; doi:10.1038/ismej.2017.179.

Decalcification and survival of benthic foraminifera under the combined impacts of varying pH and salinity.

Science.gov (United States)

Charrieau, Laurie M; Filipsson, Helena L; Nagai, Yukiko; Kawada, Sachiko; Ljung, Karl; Kritzberg, Emma; Toyofuku, Takashi

2018-04-03

Coastal areas display natural large environmental variability such as frequent changes in salinity, pH, and carbonate chemistry. Anthropogenic impacts - especially ocean acidification - increase this variability, which may affect the living conditions of coastal species, particularly, calcifiers. We performed culture experiments on living benthic foraminifera to study the combined effects of lowered pH and salinity on the calcification abilities and survival of the coastal, calcitic species Ammonia sp. and Elphidium crispum. We found that in open ocean conditions (salinity ∼35) and lower pH than usual values for these species, the specimens displayed resistance to shell (test) dissolution for a longer time than in brackish conditions (salinity ∼5 to 20). However, the response was species specific as Ammonia sp. specimens survived longer than E. crispum specimens when placed in the same conditions of salinity and pH. Living, decalcified juveniles of Ammonia sp. were observed and we show that desalination is one cause for the decalcification. Finally, we highlight the ability of foraminifera to survive under Ω calc  salinity and [Ca 2+ ] as building blocks are crucial for the foraminiferal calcification process. Copyright © 2018 Elsevier Ltd. All rights reserved.

Tapping the biotechnological potential of insect microbial symbionts: new insecticidal porphyrins.

Science.gov (United States)

Martinez, Ana Flávia Canovas; de Almeida, Luís Gustavo; Moraes, Luiz Alberto Beraldo; Cônsoli, Fernando Luís

2017-06-27

The demand for sustainable agricultural practices and the limited progress toward newer and safer chemicals for use in pest control maintain the impetus for research and identification of new natural molecules. Natural molecules are preferable to synthetic organic molecules because they are biodegradable, have low toxicity, are often selective and can be applied at low concentrations. Microbes are one source of natural insecticides, and microbial insect symbionts have attracted attention as a source of new bioactive molecules because these microbes are exposed to various selection pressures in their association with insects. Analytical techniques must be used to isolate and characterize new compounds, and sensitive analytical tools such as mass spectrometry and high-resolution chromatography are required to identify the least-abundant molecules. We used classical fermentation techniques combined with tandem mass spectrometry to prospect for insecticidal substances produced by the ant symbiont Streptomyces caniferus. Crude extracts from this bacterium showed low biological activity (less than 10% mortality) against the larval stage of the fall armyworm Spodoptera frugiperda. Because of the complexity of the crude extract, we used fractionation-guided bioassays to investigate if the low toxicity was related to the relative abundance of the active molecule, leading to the isolation of porphyrins as active molecules. Porphyrins are a class of photoactive molecules with a broad range of bioactivity, including insecticidal. The active fraction, containing a mixture of porphyrins, induced up to 100% larval mortality (LD 50  = 37.7 μg.cm -2 ). Tandem mass-spectrometry analyses provided structural information for two new porphyrin structures. Data on the availability of porphyrins in 67 other crude extracts of ant ectosymbionts were also obtained with ion-monitoring experiments. Insect-associated bacterial symbionts are a rich source of bioactive compounds. Exploring

Megalodon, mako shark and planktonic foraminifera from the continental shelf off Portugal and their age

OpenAIRE

ANTUNES, M.; LEGOINHA, P.; BALBINO, A.

2015-01-01

Turbidite fragments collected by a fishing net off the central Portuguese coast (Peniche) present some fossils. The matrix is phosphatized and iron-rich with small quantities of manganese, zinc and copper. The occurrence of Megaselachus megalodon most probably excludes an age older than Middle Miocene. Its very advanced evolution stage is consistent with a Pliocene age. Based on planktonic foraminifera in depressions of cetacean skulls recovered in the same way, from the same area...

Characterizing the host and symbiont proteomes in the association between the Bobtail squid, Euprymna scolopes, and the bacterium, Vibrio fischeri.

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Tyler R Schleicher

Full Text Available The beneficial symbiosis between the Hawaiian bobtail squid, Euprymna scolopes, and the bioluminescent bacterium, Vibrio fischeri, provides a unique opportunity to study host/microbe interactions within a natural microenvironment. Colonization of the squid light organ by V. fischeri begins a lifelong association with a regulated daily rhythm. Each morning the host expels an exudate from the light organ consisting of 95% of the symbiont population in addition to host hemocytes and shed epithelial cells. We analyzed the host and symbiont proteomes of adult squid exudate and surrounding light organ epithelial tissue using 1D- and 2D-polyacrylamide gel electrophoresis and multidimensional protein identification technology (MudPIT in an effort to understand the contribution of both partners to the maintenance of this association. These proteomic analyses putatively identified 1581 unique proteins, 870 proteins originating from the symbiont and 711 from the host. Identified host proteins indicate a role of the innate immune system and reactive oxygen species (ROS in regulating the symbiosis. Symbiont proteins detected enhance our understanding of the role of quorum sensing, two-component signaling, motility, and detoxification of ROS and reactive nitrogen species (RNS inside the light organ. This study offers the first proteomic analysis of the symbiotic microenvironment of the adult light organ and provides the identification of proteins important to the regulation of this beneficial association.

Acetic Acid Bacteria as Symbionts of Insects

KAUST Repository

Crotti, Elena; Chouaia, Bessem; Alma, Alberto; Favia, Guido; Bandi, Claudio; Bourtzis, Kostas; Daffonchio, Daniele

2016-01-01

Acetic acid bacteria (AAB) are being increasingly described as associating with different insect species that rely on sugar-based diets. AAB have been found in several insect orders, among them Diptera, Hemiptera, and Hymenoptera, including several vectors of plant, animal, and human diseases. AAB have been shown to associate with the epithelia of different organs of the host, they are able to move within the insect’s body and to be transmitted horizontally and vertically. Here, we review the ecology of AAB and examine their relationships with different insect models including mosquitoes, leafhoppers, and honey bees. We also discuss the potential use of AAB in symbiont-based control strategies, such as “Trojan-horse” agents, to block the transmission of vector-borne diseases.

Acetic Acid Bacteria as Symbionts of Insects

KAUST Repository

Crotti, Elena

2016-06-14

Acetic acid bacteria (AAB) are being increasingly described as associating with different insect species that rely on sugar-based diets. AAB have been found in several insect orders, among them Diptera, Hemiptera, and Hymenoptera, including several vectors of plant, animal, and human diseases. AAB have been shown to associate with the epithelia of different organs of the host, they are able to move within the insect’s body and to be transmitted horizontally and vertically. Here, we review the ecology of AAB and examine their relationships with different insect models including mosquitoes, leafhoppers, and honey bees. We also discuss the potential use of AAB in symbiont-based control strategies, such as “Trojan-horse” agents, to block the transmission of vector-borne diseases.

Cardinium symbionts induce haploid thelytoky in most clones of three closely related Brevipalpus species

NARCIS (Netherlands)

Groot, T.V.M.; Breeuwer, J.A.J.

2006-01-01

Bacterial symbionts that manipulate the reproduction of their host to increase their own transmission are widespread. Most of these bacteria are Wolbachia, but recently a new bacterium, named Cardinium, was discovered that is capable of the same manipulations. In the host species Brevipalpus

Tapping the biotechnological potential of insect microbial symbionts: new insecticidal porphyrins

OpenAIRE

Martinez, Ana Fl?via Canovas; de Almeida, Lu?s Gustavo; Moraes, Luiz Alberto Beraldo; C?nsoli, Fernando Lu?s

2017-01-01

Background The demand for sustainable agricultural practices and the limited progress toward newer and safer chemicals for use in pest control maintain the impetus for research and identification of new natural molecules. Natural molecules are preferable to synthetic organic molecules because they are biodegradable, have low toxicity, are often selective and can be applied at low concentrations. Microbes are one source of natural insecticides, and microbial insect symbionts have attracted att...

Environmental controls on the distribution of living (stained) benthic foraminifera on the continental slope in the Campos Basin area (SW Atlantic)

Science.gov (United States)

Yamashita, Cintia; Mello e Sousa, Silvia Helena de; Vicente, Thaisa Marques; Martins, Maria Virgínia; Nagai, Renata Hanae; Frontalini, Fabrizio; Godoi, Sueli Susana; Napolitano, Dante; Burone, Letícia; Carreira, Renato; Figueira, Rubens Cesar Lopes; Taniguchi, Nancy Kazumi; Rezende, Carlos Eduardo de; Koutsoukos, Eduardo Apostolos Machado

2018-05-01

Living (stained) benthic foraminifera from deep-sea stations in the Campos Basin, southeastern Brazilian continental margin, were investigated to understand their distribution patterns and ecology, as well as the oceanographic processes that control foraminiferal distribution. Sediments were collected from 1050 m to 1950 m of water depth during the austral winter of 2003, below the Intermediate Western Boundary Current (IWBC) and the Deep Water Boundary Current (DWBC). Based on statistical analysis, vertical flux of particulate organic matter and the grain size of sediment seem to be the main factors controlling the spatial distribution of benthic foraminifera. The middle slope (1050 m deep) is characterized by relatively high foraminiferal density and a predominance of phytodetritus-feeding foraminifera such as Epistominella exigua and Globocassidulina subglobosa. The occurrence of these species seems to reflect the Brazil Current System (BCS). The above-mentioned currents are associated with the relatively high vertical flux of particulate organic matter and the prevalence of sandy sediments, respectively. The lower slope (between 1350 and 1950 m of water depth) is marked by low foraminiferal density and assemblages composed of Bolivina spp. and Brizalina spp., with low particulate organic matter flux values, muddy sediments, and more refractory organic matter. The distribution of this group seems to be related to episodic fluxes of food particles to the seafloor, which are influenced by the BCS at the surface and are deposited under low deep current activity (DWBC).

Earthworm symbiont Verminephrobacter eiseniae mediates natural transformation within the host egg capsules using type IV pili

Directory of Open Access Journals (Sweden)

SEANA Kelyn DAVIDSON

2014-10-01

Full Text Available The dense microbial communities commonly associated with plants and animals should offer many opportunities for horizontal gene transfer (HGT through described mechanisms of DNA exchange including natural transformation. However, studies of the significance of natural transformation have focused primarily on pathogens. The study presented here demonstrates highly efficient DNA exchange by natural transformation in a common symbiont of earthworms. The obligate bacterial symbiont Verminephrobacter eiseniae is a member of a microbial consortium of the earthworm Eisenia fetida that is transmitted into the egg capsules to colonize the embryonic worms. In the study presented here, by testing for transformants under different conditions in culture, we demonstrate that V. eiseniae can incorporate free DNA from the environment, that competency is regulated by environmental factors, and that it is sequence specific. Mutations in the type IV pili of V. eiseniae resulted in loss of DNA uptake, implicating the type IV pilus (TFP apparatus in DNA uptake. Furthermore, injection of DNA carrying antibiotic-resistance genes into egg capsules resulted in transformants within the capsule, demonstrating the relevance of DNA uptake within the earthworm system. The ability to take up species-specific DNA from the environment may explain the maintenance of the relatively large, intact genome of this long-associated obligate symbiont, and provides a mechanism for acquisition of foreign genes within the earthworm system.

Four new species of deep water agglutinated foraminifera from the Oligocene-Miocene of the Congo Fan (offshore Angola)

OpenAIRE

Kender, S.; Kaminski, M. A.; Jones, R. W.

2006-01-01

Four new species of deep-water agglutinated benthic foraminifera are described from the Oligocene and Miocene of the Congo Fan, offshore Angola. Scherochorella congoensis n.sp., Paratrochamminoides goroyskiformis n.sp., Haplophragmoides nauticus n.sp. and Portatrochammina profunda n.sp. all occur in deep-sea turbiditic shales and sands from the distal section of the Congo Fan.

Genetic Diversity of Nostoc Symbionts Endophytically Associated with Two Bryophyte Species

OpenAIRE

Costa, José-Luis; Paulsrud, Per; Rikkinen, Jouko; Lindblad, Peter

2001-01-01

The diversity of the endophytic Nostoc symbionts of two thalloid bryophytes, the hornwort Anthoceros fusiformis and the liverwort Blasia pusilla, was examined using the tRNALeu (UAA) intron sequence as a marker. The results confirmed that many different Nostoc strains are involved in both associations under natural conditions in the field. The level of Nostoc diversity within individual bryophyte thalli varied, but single DNA fragments were consistently amplified from individual symbiotic col...

Phylogenetic analysis of algal symbionts associated with four North American amphibian egg masses.

Science.gov (United States)

Kim, Eunsoo; Lin, Yuan; Kerney, Ryan; Blumenberg, Lili; Bishop, Cory

2014-01-01

Egg masses of the yellow-spotted salamander Ambystoma maculatum form an association with the green alga "Oophila amblystomatis" (Lambert ex Wille), which, in addition to growing within individual egg capsules, has recently been reported to invade embryonic tissues and cells. The binomial O. amblystomatis refers to the algae that occur in A. maculatum egg capsules, but it is unknown whether this population of symbionts constitutes one or several different algal taxa. Moreover, it is unknown whether egg masses across the geographic range of A. maculatum, or other amphibians, associate with one or multiple algal taxa. To address these questions, we conducted a phylogeographic study of algae sampled from egg capsules of A. maculatum, its allopatric congener A. gracile, and two frogs: Lithobates sylvatica and L. aurora. All of these North American amphibians form associations with algae in their egg capsules. We sampled algae from egg capsules of these four amphibians from localities across North America, established representative algal cultures, and amplified and sequenced a region of 18S rDNA for phylogenetic analysis. Our combined analysis shows that symbiotic algae found in egg masses of four North American amphibians are closely related to each other, and form a well-supported clade that also contains three strains of free-living chlamydomonads. We designate this group as the 'Oophila' clade, within which the symbiotic algae are further divided into four distinct subclades. Phylogenies of the host amphibians and their algal symbionts are only partially congruent, suggesting that host-switching and co-speciation both play roles in their associations. We also established conditions for isolating and rearing algal symbionts from amphibian egg capsules, which should facilitate further study of these egg mass specialist algae.

Phylogenetic analysis of algal symbionts associated with four North American amphibian egg masses.

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Eunsoo Kim

Full Text Available Egg masses of the yellow-spotted salamander Ambystoma maculatum form an association with the green alga "Oophila amblystomatis" (Lambert ex Wille, which, in addition to growing within individual egg capsules, has recently been reported to invade embryonic tissues and cells. The binomial O. amblystomatis refers to the algae that occur in A. maculatum egg capsules, but it is unknown whether this population of symbionts constitutes one or several different algal taxa. Moreover, it is unknown whether egg masses across the geographic range of A. maculatum, or other amphibians, associate with one or multiple algal taxa. To address these questions, we conducted a phylogeographic study of algae sampled from egg capsules of A. maculatum, its allopatric congener A. gracile, and two frogs: Lithobates sylvatica and L. aurora. All of these North American amphibians form associations with algae in their egg capsules. We sampled algae from egg capsules of these four amphibians from localities across North America, established representative algal cultures, and amplified and sequenced a region of 18S rDNA for phylogenetic analysis. Our combined analysis shows that symbiotic algae found in egg masses of four North American amphibians are closely related to each other, and form a well-supported clade that also contains three strains of free-living chlamydomonads. We designate this group as the 'Oophila' clade, within which the symbiotic algae are further divided into four distinct subclades. Phylogenies of the host amphibians and their algal symbionts are only partially congruent, suggesting that host-switching and co-speciation both play roles in their associations. We also established conditions for isolating and rearing algal symbionts from amphibian egg capsules, which should facilitate further study of these egg mass specialist algae.

Marine Maladies? Worms, Germs, and Other Symbionts from the Northern Gulf of Mexico.

Science.gov (United States)

Overstreet, Robin M.

Parasites and related symbionts of marine and estuarine hosts of the northern Gulf of Mexico are described in this guidebook. It is meant primarily to serve as a teaching aid for the novice student, but it also contains more technical aspects for the experienced parasitologist. Forms and examples of symbiosis are explained in an introductory…

Real-time PCR reveals a high incidence of Symbiodinium clade D at low levels in four scleractinian corals across the Great Barrier Reef : implications for symbiont shuffling

NARCIS (Netherlands)

Mieog, J. C.; van Oppen, M. J. H.; Cantin, N. E.; Stam, W. T.; Olsen, J. L.

Reef corals form associations with an array of genetically and physiologically distinct endosymbionts from the genus Symbiodinium. Some corals harbor different clades of symbionts simultaneously, and over time the relative abundances of these clades may change through a process called symbiont

Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T

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Nobukazu Uchiike

2011-10-01

Full Text Available The complete nucleotide sequence of the genome of the soybean symbiont Bradyrhizobium japonicum strain USDA6T was determined. The genome of USDA6T is a single circular chromosome of 9,207,384 bp. The genome size is similar to that of the genome of another soybean symbiont, B. japonicum USDA110 (9,105,828 bp. Comparison of the whole-genome sequences of USDA6T and USDA110 showed colinearity of major regions in the two genomes, although a large inversion exists between them. A significantly high level of sequence conservation was detected in three regions on each genome. The gene constitution and nucleotide sequence features in these three regions indicate that they may have been derived from a symbiosis island. An ancestral, large symbiosis island, approximately 860 kb in total size, appears to have been split into these three regions by unknown large-scale genome rearrangements. The two integration events responsible for this appear to have taken place independently, but through comparable mechanisms, in both genomes.

Gastrointestinal symbionts of chimpanzees in Cantanhez National Park, Guinea-Bissau with respect to habitat fragmentation

Czech Academy of Sciences Publication Activity Database

Sá, R. M.; Petrášová, J.; Pomajbíková, K.; Profousová, I.; Petrželková, Klára Judita; Sousa, C.; Cable, J.; Bruford, M. W.; Modrý, David

2013-01-01

Roč. 75, č. 10 (2013), s. 1032-1041 ISSN 0275-2565 Institutional support: RVO:68081766 ; RVO:60077344 Keywords : Cantanhez National Park * fragmentation * Pan troglodytes verus * parasites * symbionts * Trichuris sp Subject RIV: EG - Zoology Impact factor: 2.136, year: 2013

Low palaeoelevation of the northern Lhasa terrane during late Eocene: Fossil foraminifera and stable isotope evidence from the Gerze Basin.

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Wei, Yi; Zhang, Kexin; Garzione, Carmala N; Xu, Yadong; Song, Bowen; Ji, Junliang

2016-06-08

The Lhasa terrane is a key region for understanding the paleoelevation of the southern Tibetan Plateau after India-Asia collision. The Gerze Basin, located in the northern part of the Lhasa terrane, is a shortening-related basin. We discovered Lagena laevis (Bandy) fossils in upper Eocene strata of the Gerze Basin. This type of foraminifera is associated with lagoon and estuarine environments, indicating that the northern part of the Lhasa terrane was near sea level during the late Eocene. We speculate that these foraminifera were transported inland by storm surges to low elevation freshwater lakes during times of marine transgressions. This inference is consistent with the relatively positive δ(18)O values in carbonate from the same deposits that indicate low palaeoelevations close to sea level. Considering the palaeoelevation results from the nearby Oligocene basins at a similar latitude and the volcanic history of the Lhasa terrane, we infer that large-magnitude surface uplift of the northern Lhasa terrane occurred between late Eocene and late Oligocene time.

The Biological Nature of Geochemical Proxies: algal symbionts affect coral skeletal chemistry

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Owens, K.; Cohen, A. L.; Shimizu, N.

2001-12-01

The strontium-calcium ratio (Sr/Ca) of reef coral skeleton is an important ocean temperature proxy that has been used to address some particularly controversial climate change issues. However, the paleothermometer has sometimes proven unreliable and there are indications that the temperature-dependence of Sr/Ca in coral aragonite is linked to the photosynthetic activity of algal symbionts (zooxanthellae) in coral tissue. We examined the effect of algal symbiosis on skeletal chemistry using Astrangia danae, a small colonial temperate scleractinian that occurs naturally with and without zooxanthellae. Live symbiotic (deep brown) and asymbiotic (white) colonies of similar size were collected in Woods Hole where water temperatures fluctuate seasonally between -2oC and 23oC. We used a microbeam technique (Secondary Ion Mass Spectrometry) and a 30 micron diameter sampling beam to construct high-resolution Sr/Ca profiles, 2500 microns long, down the growth axes of the outer calical (thecal) walls. Profiles generated from co-occuring symbiotic and asymbiotic colonies are remarkably different despite their exposure to identical water temperatures. Symbiotic coral Sr/Ca displays four large-amplitude annual cycles with high values in the winter, low values in the summer and a temperature dependence similar to that of tropical reef corals. By comparison, Sr/Ca profiles constructed from asymbiotic coral skeleton display little variability over the same time period. Asymbiont Sr/Ca is relatively insensitive to the enormous temperature changes experienced over the year; the temperature dependence is similar to that of nighttime skeletal deposits in tropical reef corals and non-biological aragonite precipitates. We propose that the large variations in skeletal Sr/Ca observed in all symbiont-hosting coral species are not related to SST variability per se but are driven primarily by large seasonal variations in skeletal calcification rate associated with symbiont photosynthesis. Our

Benthic foraminifera record and geochemical studies to reconstruct the recent (~400 ya) paleoenvironment of Tomales Bay, California

Science.gov (United States)

Flores, S. C.; Hill, T. M.; Russell, A. D.; Brooks, G.

2010-12-01

We are conducting investigations of calcareous benthic foraminifera acquired from Tomales Bay, California to reconstruct geochemical conditions of the bay for the past ~400 years, a time period of both natural and anthropogenic environmental change. Tomales Bay, located ~50km northwest of San Francisco, is a long (20.4 km), narrow (0.7 - 1.7 km) and shallow (2.0 - 6.0 m) bay that exhibits long-residence times and is stratified in the summer due to seasonal hypersalinity. Tomales Bay is a unique environment for climate and environmental change research because of the wide documented variability in carbonate parameters (pH, alkalinity, DIC) due to freshwater input from terrestrial sources that decreases aragonite and calcite saturation states. The historical record provided by benthic foraminiferal species and geochemistry, sedimentary carbon (TOC and TIC) analyses, and investigations of recent (Rose-Bengal stained) foraminifera are being utilized to constrain 3 major processes: 1) the range of temperature and salinity shifts over the past 400 years, 2) the relative dominance of marine- vs. fresh-water sources to the bay, and 3) the extent to which freshwater input and runoff may influence water chemistry (saturation state, Ω) with impacts on foraminiferal calcification. Four sediment cores were acquired in 2009 and 2010, and subsequently age-dated utilizing radiocarbon analyses (seven samples). Results indicate an increase in preservation of agglutinated versus calcareous foraminiferal tests (shells) since the mid-1900’s, and greater abundances of agglutinated tests found near freshwater sources. The major calcareous foraminifera present in the record include Elphidium hannai, Elphidium excavatum, Ammonia tepida, and Buccella frigida. Results from oxygen and carbon stable isotope analyses as well as total organic carbon (by weight) for all the cores will also be presented. These results will be compared to modern observations and instrumental records of

Response of benthic foraminifera to 4.2 ka cooling event in the Nakdong River delta, southeast Korea

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Takata, H.; Khim, B. K.; Cheong, D.; Shin, S.

2016-02-01

Here we report the change of benthic foraminifera in response to 4.2 ka cooling event in the Nakdong River delta (southeastern Korea). It has been known that this cooling event caused climatic deteriorations in the world, which is closely related to the decline/development of the civilizations (e.g., Kawahata et al., 2009). This event was also correlated to one of Bond Events in the North Atlantic. Because coastal sediment depositions have been influenced by both oceanographic and terrestrial climatic changes, the study may provide us clue to understand the possible teleconnection of the cooling event between the North Atlantic and the East Asian margin. We investigated fossil benthic foraminiferal faunas and planktonic/total foraminiferal ratio (P/T ratio) at two borehole cores, ND-01 and ND-02 (landward and seaward sites, respectively). Common constituents are taxa from bay to shelf environments in the East Asian margin. Biotic response of benthic foraminifera partly changed after 4.2 ka showing that Haynesina sp. A (opportunistic species?) decreased significantly at core ND-01. In addition, P/T ratio at both core sites showed temporal decline at 4.2 ka. This suggests the decreasing influence of the seawater relative to the coastal water. Holocene fluctuations of the Tsushima Warm Current, a branch of Kuroshio, flowing off the Nakdong River delta, have been documented. The decline pattern of P/T ratio in this area is similar to that of total sulfur content in Lake Tougou-ike, southwestern Japan at 4 ka which was interpreted as the influence of the small sea-level falling (Kato et al., 2003). According to the similar stratigraphic variation patterns between our and their studies, our finding suggests that this event was not regional but related to the fluctuations of the Tsushima Warm Current. Thus, biotic response of benthic foraminifera in the Nakdong River delta recorded 4.2 ka cooling event related to temporal weakening of the Tsushima Warm Current.

Does temperature affect dimorphic reproduction in benthic foraminifera? A culture experiment on Rosalina leei

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.; Caron, D.A.

,15 . ? For correspondence. (e - mail: nigam@csnio.ren.nic.in ) First, a preliminary survey was made for collection of benthic foraminifera from sea grasses and surface sed i- ment samples from three locations near Woods Hole, Massachusetts, USA, viz. (i) Vineyar d..., 15 , 26 ? 34. 3. Rottger, R., Fladung, M., Schmaljo hann, R., Spi n dler, M. and Zacharias, H., J. Foram. Res ., 1986, 16 , 141 ? 149. 4. Harney, J. N., Hallock, P. and Jalge, H. K., J. F o ram. Res ., 1998, 28 , 141 ? 147. 5. Lee, J...

Productivity links morphology, symbiont specificity and bleaching in the evolution of Caribbean octocoral symbioses.

Science.gov (United States)

Baker, David M; Freeman, Christopher J; Knowlton, Nancy; Thacker, Robert W; Kim, Kiho; Fogel, Marilyn L

2015-12-01

Many cnidarians host endosymbiotic dinoflagellates from the genus Symbiodinium. It is generally assumed that the symbiosis is mutualistic, where the host benefits from symbiont photosynthesis while providing protection and photosynthetic substrates. Diverse assemblages of symbiotic gorgonian octocorals can be found in hard bottom communities throughout the Caribbean. While current research has focused on the phylo- and population genetics of gorgonian symbiont types and their photo-physiology, relatively less work has focused on biogeochemical benefits conferred to the host and how these benefits vary across host species. Here we examine this symbiosis among 11 gorgonian species collected in Bocas del Toro, Panama. By coupling light and dark bottle incubations (P/R) with (13)C-bicarbonate tracers, we quantified the link between holobiont oxygen metabolism with carbon assimilation and translocation from symbiont to host. Our data show that P/R varied among species, and was correlated with colony morphology and polyp size. Sea fans and sea plumes were net autotrophs (P/R>1.5), while nine species of sea rods were net heterotrophs with most below compensation (P/R<1.0). (13)C assimilation corroborated the P/R results, and maximum δ(13)Chost values were strongly correlated with polyp size, indicating higher productivity by colonies with high polyp SA:V. A survey of gorgonian-Symbiodinium associations revealed that productive species maintain specialized, obligate symbioses and are more resistant to coral bleaching, whereas generalist and facultative associations are common among sea rods that have higher bleaching sensitivities. Overall, productivity and polyp size had strong phylogenetic signals with carbon fixation and polyp size showing evidence of trait covariance.

Genetic Diversity and Phylogenetic Relationships of Coevolving Symbiont-Harboring Insect Trypanosomatids, and Their Neotropical Dispersal by Invader African Blowflies (Calliphoridae

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Tarcilla C. Borghesan

2018-02-01

Full Text Available This study is about the inter- and intra-specific genetic diversity of trypanosomatids of the genus Angomonas, and their association with Calliphoridae (blowflies in Neotropical and Afrotropical regions. Microscopic examination of 3,900 flies of various families, mostly Calliphoridae, revealed that 31% of them harbored trypanosomatids. Small subunit rRNA (SSU rRNA barcoding showed that Angomonas predominated (46% over the other common trypanosomatids of blowflies of genera Herpetomonas and Wallacemonas. Among Angomonas spp., A. deanei was much more common than the two-other species, A. desouzai and A. ambiguus. Phylogenetic analyses based on SSU rRNA, glycosomal glyceraldehyde-3-phosphate dehydrogenase (gGAPDH and internal transcribed spacer rDNA (ITS rDNA sequences revealed a marked genetic diversity within A. deanei, which comprised four infraspecific genotypes (Dea1–Dea4, and four corresponding symbiont genotypes (Kcr1–Kcr4. Host and symbiont phylogenies were highly congruent corroborating their co-divergence, consistent with host-symbiont interdependent metabolism and symbiont reduced genomes shaped by a long coevolutionary history. We compared the diversity of Angomonas/symbionts from three genera of blowflies, Lucilia, Chrysomya and Cochliomyia. A. deanei, A. desouzai, and A. ambiguus were found in the three genera of blowflies in South America. In Africa, A. deanei and A. ambiguus were identified in Chrysomya. The absence of A. desouzai in Africa and its presence in Neotropical Cochliomyia and Lucilia suggests parasite spillback of A. desouzai into Chrysomya, which was most likely introduced four decades ago from Africa into the Neotropic. The absence of correlation between parasite diversity and geographic and genetic distances, with identical genotypes of A. deanei found in the Neotropic and Afrotropic, is consistent with disjunct distribution due to the recent human-mediated transoceanic dispersal of Angomonas by Chrysomya. This

The inadequacy of morphology for species and genus delineation in microbial eukaryotes: an example from the parabasalian termite symbiont coronympha.

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James T Harper

Full Text Available BACKGROUND: For the majority of microbial eukaryotes (protists, algae, there is no clearly superior species concept that is consistently applied. In the absence of a practical biological species concept, most species and genus level delineations have historically been based on morphology, which may lead to an underestimate of the diversity of microbial eukaryotes. Indeed, a growing body of molecular evidence, such as barcoding surveys, is beginning to support the conclusion that significant cryptic species diversity exists. This underestimate of diversity appears to be due to a combination of using morphology as the sole basis for assessing diversity and our inability to culture the vast majority of microbial life. Here we have used molecular markers to assess the species delineations in two related but morphologically distinct genera of uncultivated symbionts found in the hindgut of termites. METHODOLOGY/PRINCIPAL FINDINGS: Using single-cell isolation and environmental PCR, we have used a barcoding approach to characterize the diversity of Coronympha and Metacoronympha symbionts in four species of Incisitermes termites, which were also examined using scanning electron microscopy and light microcopy. Despite the fact that these genera are significantly different in morphological complexity and structural organisation, we find they are two life history stages of the same species. At the same time, we show that the symbionts from different termite hosts show an equal or greater level of sequence diversity than do the hosts, despite the fact that the symbionts are all classified as one species. CONCLUSIONS/SIGNIFICANCE: The morphological information used to describe the diversity of these microbial symbionts is misleading at both the genus and species levels, and led to an underestimate of species level diversity as well as an overestimate of genus level diversity. The genus 'Metacoronympha' is invalid and appears to be a life history stage of

Planktic foraminifera form their shells via metastable carbonate phases.

Science.gov (United States)

Jacob, D E; Wirth, R; Agbaje, O B A; Branson, O; Eggins, S M

2017-11-02

The calcium carbonate shells of planktic foraminifera provide our most valuable geochemical archive of ocean surface conditions and climate spanning the last 100 million years, and play an important role in the ocean carbon cycle. These shells are preserved in marine sediments as calcite, the stable polymorph of calcium carbonate. Here, we show that shells of living planktic foraminifers Orbulina universa and Neogloboquadrina dutertrei originally form from the unstable calcium carbonate polymorph vaterite, implying a non-classical crystallisation pathway involving metastable phases that transform ultimately to calcite. The current understanding of how planktic foraminifer shells record climate, and how they will fare in a future high-CO 2 world is underpinned by analogy to the precipitation and dissolution of inorganic calcite. Our findings require a re-evaluation of this paradigm to consider the formation and transformation of metastable phases, which could exert an influence on the geochemistry and solubility of the biomineral calcite.

Bearing system

Science.gov (United States)

Kapich, Davorin D.

1987-01-01

A bearing system includes backup bearings for supporting a rotating shaft upon failure of primary bearings. In the preferred embodiment, the backup bearings are rolling element bearings having their rolling elements disposed out of contact with their associated respective inner races during normal functioning of the primary bearings. Displacement detection sensors are provided for detecting displacement of the shaft upon failure of the primary bearings. Upon detection of the failure of the primary bearings, the rolling elements and inner races of the backup bearings are brought into mutual contact by axial displacement of the shaft.

Common species link global ecosystems to climate change: dynamical evidence in the planktonic fossil record.

Science.gov (United States)

Hannisdal, Bjarte; Haaga, Kristian Agasøster; Reitan, Trond; Diego, David; Liow, Lee Hsiang

2017-07-12

Common species shape the world around us, and changes in their commonness signify large-scale shifts in ecosystem structure and function. However, our understanding of long-term ecosystem response to environmental forcing in the deep past is centred on species richness, neglecting the disproportional impact of common species. Here, we use common and widespread species of planktonic foraminifera in deep-sea sediments to track changes in observed global occupancy (proportion of sampled sites at which a species is present and observed) through the turbulent climatic history of the last 65 Myr. Our approach is sensitive to relative changes in global abundance of the species set and robust to factors that bias richness estimators. Using three independent methods for detecting causality, we show that the observed global occupancy of planktonic foraminifera has been dynamically coupled to past oceanographic changes captured in deep-ocean temperature reconstructions. The causal inference does not imply a direct mechanism, but is consistent with an indirect, time-delayed causal linkage. Given the strong quantitative evidence that a dynamical coupling exists, we hypothesize that mixotrophy (symbiont hosting) may be an ecological factor linking the global abundance of planktonic foraminifera to long-term climate changes via the relative extent of oligotrophic oceans. © 2017 The Authors.

Multiproxies (benthic foraminifera, ostracods and biopolymers approach applied to identify the environmental partitioning of the Guadiana River Estuary (Iberian Peninsula

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Lazaro Luiz Mattos Laut

2016-04-01

Full Text Available The Guadiana River is the fourth longest river in Europe and is a natural frontier between southern Portugal and Spain. This river was historically used to transport minerals exploited in the region since the Roman Empire and therefore suffered human interventions that have been intensified after the industrial revolution. The Guadiana River has in its limits the Guadiana Valley Natural Park, which is of great value for the Conservation of Geobiodiversity. This study mainly aims to identify zones with the environmental characteristics in the estuarine area of the Guadiana River based on the distribution and ecology of microorganisms (ostracods and foraminifera associated with physicochemical parameters and sedimentological and geochemical (carbohydrate, lipid, protein, total organic carbon and total sulfur data. Fifty-five foraminifera taxa were identified along the estuary with dominance of Ammonia tepida and Miliammina fusca and 13 ostracods taxa with dominance Leptocythere lacertosa and Loxoconcha elliptica. Detrended correspondence analysis (DCA performed using biotic and abiotic variables indicated that pH, grain size, total organic carbon (TOC and lipids were the most influent factors in the distribution of these organisms. Four zones were identified in the Guadiana River estuary: i Low estuary - region with the largest marine influence with sandy sediment, higher salinity and total sulfur and mainly represented by the dominance of estuarine species of foraminifera (Ammonia tepida and Cribroelphidium vadescens and by the ostracods (Darwinula stevensoni, Semicytherura sulcata and Urocythereis oblonga; ii Intermediate estuary - region characterized by neutral pH and sandy sediment enriched in carbohydrates; this region is characterized by the presence of the ostracods species Cytherois fischeri and Neocytherideis subulata and by calcareous and agglutinated species in foraminiferal assemblages; iii Upper estuary - silt, high TOC, proteins and

Antagonistic interactions between honey bee bacterial symbionts and implications for disease

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Armstrong Tamieka-Nicole

2006-03-01

Full Text Available Abstract Background Honey bees, Apis mellifera, face many parasites and pathogens and consequently rely on a diverse set of individual and group-level defenses to prevent disease. One route by which honey bees and other insects might combat disease is through the shielding effects of their microbial symbionts. Bees carry a diverse assemblage of bacteria, very few of which appear to be pathogenic. Here we explore the inhibitory effects of these resident bacteria against the primary bacterial pathogen of honey bees, Paenibacillus larvae. Results Here we isolate, culture, and describe by 16S rRNA and protein-coding gene sequences 61 bacterial isolates from honey bee larvae, reflecting a total of 43 distinct bacterial taxa. We culture these bacteria alongside the primary larval pathogen of honey bees, Paenibacillus larvae, and show that many of these isolates severely inhibit the growth of this pathogen. Accordingly, symbiotic bacteria including those described here are plausible natural antagonists toward this widespread pathogen. Conclusion The results suggest a tradeoff in social insect colonies between the maintenance of potentially beneficial bacterial symbionts and deterrence at the individual and colony level of pathogenic species. They also provide a novel mechanism for recently described social components behind disease resistance in insect colonies, and point toward a potential control strategy for an important bee disease.

Juvenile corals can acquire more carbon from high-performance algal symbionts

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Cantin, N. E.; van Oppen, M. J. H.; Willis, B. L.; Mieog, J. C.; Negri, A. P.

2009-06-01

Algal endosymbionts of the genus Symbiodinium play a key role in the nutrition of reef building corals and strongly affect the thermal tolerance and growth rate of the animal host. This study reports that 14C photosynthate incorporation into juvenile coral tissues was doubled in Acropora millepora harbouring Symbiodinium C1 compared with juveniles from common parentage harbouring Symbiodinium D in a laboratory experiment. Rapid light curves performed on the same corals revealed that the relative electron transport rate of photosystem II (rETRMAX) was 87% greater in Symbiodinium C1 than in Symbiodinium D in hospite. The greater relative electron transport through photosystem II of Symbiodinium C1 is positively correlated with increased carbon delivery to the host under the applied experimental conditions ( r 2 = 0.91). This may translate into a competitive advantage for juveniles harbouring Symbiodinium C1 under certain field conditions, since rapid early growth typically limits mortality. Both symbiont types exhibited severe reductions in 14C incorporation during a 10-h exposure to the electron transport blocking herbicide diuron (DCMU), confirming the link between electron transport through PSII and photosynthate incorporation within the host tissue. These findings advance the current understanding of symbiotic relationships between corals and their symbionts, providing evidence that enhanced growth rates of juvenile corals may result from greater translocation of photosynthates from Symbiodinium C1.

Potential costs of acclimatization to a warmer climate: growth of a reef coral with heat tolerant vs. sensitive symbiont types.

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Alison Jones

Full Text Available One of the principle ways in which reef building corals are likely to cope with a warmer climate is by changing to more thermally tolerant endosymbiotic algae (zooxanthellae genotypes. It is highly likely that hosting a more heat-tolerant algal genotype will be accompanied by tradeoffs in the physiology of the coral. To better understand one of these tradeoffs, growth was investigated in the Indo-Pacific reef-building coral Acropora millepora in both the laboratory and the field. In the Keppel Islands in the southern Great Barrier Reef this species naturally harbors nrDNA ITS1 thermally sensitive type C2 or thermally tolerant type D zooxanthellae of the genus Symbiodinium and can change dominant type following bleaching. We show that under controlled conditions, corals with type D symbionts grow 29% slower than those with type C2 symbionts. In the field, type D colonies grew 38% slower than C2 colonies. These results demonstrate the magnitude of trade-offs likely to be experienced by this species as they acclimatize to warmer conditions by changing to more thermally tolerant type D zooxanthellae. Irrespective of symbiont genotype, corals were affected to an even greater degree by the stress of a bleaching event which reduced growth by more than 50% for up to 18 months compared to pre-bleaching rates. The processes of symbiont change and acute thermal stress are likely to act in concert on coral growth as reefs acclimatize to more stressful warmer conditions, further compromising their regeneration capacity following climate change.

Potential Costs of Acclimatization to a Warmer Climate: Growth of a Reef Coral with Heat Tolerant vs. Sensitive Symbiont Types

Science.gov (United States)

Jones, Alison; Berkelmans, Ray

2010-01-01

One of the principle ways in which reef building corals are likely to cope with a warmer climate is by changing to more thermally tolerant endosymbiotic algae (zooxanthellae) genotypes. It is highly likely that hosting a more heat-tolerant algal genotype will be accompanied by tradeoffs in the physiology of the coral. To better understand one of these tradeoffs, growth was investigated in the Indo-Pacific reef-building coral Acropora millepora in both the laboratory and the field. In the Keppel Islands in the southern Great Barrier Reef this species naturally harbors nrDNA ITS1 thermally sensitive type C2 or thermally tolerant type D zooxanthellae of the genus Symbiodinium and can change dominant type following bleaching. We show that under controlled conditions, corals with type D symbionts grow 29% slower than those with type C2 symbionts. In the field, type D colonies grew 38% slower than C2 colonies. These results demonstrate the magnitude of trade-offs likely to be experienced by this species as they acclimatize to warmer conditions by changing to more thermally tolerant type D zooxanthellae. Irrespective of symbiont genotype, corals were affected to an even greater degree by the stress of a bleaching event which reduced growth by more than 50% for up to 18 months compared to pre-bleaching rates. The processes of symbiont change and acute thermal stress are likely to act in concert on coral growth as reefs acclimatize to more stressful warmer conditions, further compromising their regeneration capacity following climate change. PMID:20454653

Potential costs of acclimatization to a warmer climate: growth of a reef coral with heat tolerant vs. sensitive symbiont types.

Science.gov (United States)

Jones, Alison; Berkelmans, Ray

2010-05-03

One of the principle ways in which reef building corals are likely to cope with a warmer climate is by changing to more thermally tolerant endosymbiotic algae (zooxanthellae) genotypes. It is highly likely that hosting a more heat-tolerant algal genotype will be accompanied by tradeoffs in the physiology of the coral. To better understand one of these tradeoffs, growth was investigated in the Indo-Pacific reef-building coral Acropora millepora in both the laboratory and the field. In the Keppel Islands in the southern Great Barrier Reef this species naturally harbors nrDNA ITS1 thermally sensitive type C2 or thermally tolerant type D zooxanthellae of the genus Symbiodinium and can change dominant type following bleaching. We show that under controlled conditions, corals with type D symbionts grow 29% slower than those with type C2 symbionts. In the field, type D colonies grew 38% slower than C2 colonies. These results demonstrate the magnitude of trade-offs likely to be experienced by this species as they acclimatize to warmer conditions by changing to more thermally tolerant type D zooxanthellae. Irrespective of symbiont genotype, corals were affected to an even greater degree by the stress of a bleaching event which reduced growth by more than 50% for up to 18 months compared to pre-bleaching rates. The processes of symbiont change and acute thermal stress are likely to act in concert on coral growth as reefs acclimatize to more stressful warmer conditions, further compromising their regeneration capacity following climate change.

The morphogroups of small agglutinated foraminifera from the Devonian carbonate complex of the Prague Synform, (Barrandian area, Czech Republic)

Czech Academy of Sciences Publication Activity Database

Holcová, K.; Slavík, Ladislav

2013-01-01

Roč. 386, č. 5 (2013), s. 210-214 ISSN 0031-0182 Grant - others:Rada Programu interní podpory projektů mezinárodní spolupráce AV ČR(CZ) M100131201 Institutional support: RVO:67985831 Keywords : Barrandian area * Early Devonian * foraminifera * morphogroups Subject RIV: DB - Geology ; Mineralogy Impact factor: 2.752, year: 2013

Carbon translocation from symbiont to host depends on irradiance and food availability in the tropical coral Stylophora pistillata

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Tremblay, P.; Grover, R.; Maguer, J. F.; Hoogenboom, M.; Ferrier-Pagès, C.

2014-03-01

Reef-building corals live in symbiosis with dinoflagellates that translocate a large proportion of their photosynthetically fixed carbon compounds to their coral host for its own metabolism. The carbon budget and translocation rate, however, vary depending on environmental conditions, coral host species, and symbiont clade. To quantify variability in carbon translocation in response to environmental conditions, this study assessed the effect of two different irradiance levels (120 and 250 μmol photons m-2 s-1) and feeding regimes (fed with Artemia salina nauplii and unfed) on the carbon budget of the tropical coral Stylophora pistillata. For this purpose, H13CO3 --enriched seawater was used to trace the conversion of photosynthetic carbon into symbiont and coral biomass and excrete particulate organic carbon. Results showed that carbon translocation (ca. 78 %) and utilization were similar under both irradiance levels for unfed colonies. In contrast, carbon utilization by fed colonies was dependent on the growth irradiance. Under low irradiance, heterotrophy was accompanied by lower carbon translocation (71 %), higher host and symbiont biomass, and higher calcification rates. Under high irradiance, heterotrophy was accompanied by higher rates of photosynthesis, respiration, and carbon translocation (90 %) as well as higher host biomass. Hence, levels of resource sharing within coral-dinoflagellate symbioses depend critically on environmental conditions.

Toward a better understanding of the mechanisms of symbiosis: a comprehensive proteome map of a nascent insect symbiont.

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Renoz, François; Champagne, Antoine; Degand, Hervé; Faber, Anne-Marie; Morsomme, Pierre; Foray, Vincent; Hance, Thierry

2017-01-01

Symbiotic bacteria are common in insects and can affect various aspects of their hosts' biology. Although the effects of insect symbionts have been clarified for various insect symbiosis models, due to the difficulty of cultivating them in vitro , there is still limited knowledge available on the molecular features that drive symbiosis. Serratia symbiotica is one of the most common symbionts found in aphids. The recent findings of free-living strains that are considered as nascent partners of aphids provide the opportunity to examine the molecular mechanisms that a symbiont can deploy at the early stages of the symbiosis (i.e., symbiotic factors). In this work, a proteomic approach was used to establish a comprehensive proteome map of the free-living S. symbiotica strain CWBI-2.3 T . Most of the 720 proteins identified are related to housekeeping or primary metabolism. Of these, 76 were identified as candidate proteins possibly promoting host colonization. Our results provide strong evidence that S. symbiotica CWBI-2.3 T is well-armed for invading insect host tissues, and suggest that certain molecular features usually harbored by pathogenic bacteria are no longer present. This comprehensive proteome map provides a series of candidate genes for further studies to understand the molecular cross-talk between insects and symbiotic bacteria.

Toward a better understanding of the mechanisms of symbiosis: a comprehensive proteome map of a nascent insect symbiont

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François Renoz

2017-05-01

Full Text Available Symbiotic bacteria are common in insects and can affect various aspects of their hosts’ biology. Although the effects of insect symbionts have been clarified for various insect symbiosis models, due to the difficulty of cultivating them in vitro, there is still limited knowledge available on the molecular features that drive symbiosis. Serratia symbiotica is one of the most common symbionts found in aphids. The recent findings of free-living strains that are considered as nascent partners of aphids provide the opportunity to examine the molecular mechanisms that a symbiont can deploy at the early stages of the symbiosis (i.e., symbiotic factors. In this work, a proteomic approach was used to establish a comprehensive proteome map of the free-living S. symbiotica strain CWBI-2.3T. Most of the 720 proteins identified are related to housekeeping or primary metabolism. Of these, 76 were identified as candidate proteins possibly promoting host colonization. Our results provide strong evidence that S. symbiotica CWBI-2.3T is well-armed for invading insect host tissues, and suggest that certain molecular features usually harbored by pathogenic bacteria are no longer present. This comprehensive proteome map provides a series of candidate genes for further studies to understand the molecular cross-talk between insects and symbiotic bacteria.

Biological fractionation of oxygen and carbon isotopes by recent benthic foraminifera

International Nuclear Information System (INIS)

Woodruff, F.; Douglas, R.G.

1980-01-01

Recent deep-sea benthic foraminifera from five East Pacific Rise box core tops have been analyzed for oxygen and carbon isotopic composition. The five equatorial stations, with water depths of between 3200 and 4600 m, yielded fourteen specific and generic taxonomic groups. Of the taxa analyzed, Uvigerina spp. most closely approaches oxygen isotopic equilibrium with ambient sea water. Pyrgo spp. was next closest to isotopic equilibrium, being on the average 0.59 per thousand depleted in 18 O relative to Uvigerina spp. Oridorsalis umbonatus also has relatively high delta 18 O values. Most other taxa were depleted in 18 O by large amounts. In no taxa was the carbon in the CaCO 3 secreted in carbon isotopic equilibrium with the dissolved HCO 3 - of ambient sea water. (Auth.)

Rhizobium laguerreae is the main nitrogen-fixing symbiont of cultivated lentil (Lens culinaris) in Morocco.

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Taha, Kaoutar; Berraho, El Bekkay; El Attar, Imane; Dekkiche, Samia; Aurag, Jamal; Béna, Gilles

2018-03-01

Genetic diversity and population structure of 268 Lens culinaris symbiotic rhizobia collected from 40 cultivated fields in the main lentil production regions in Morocco were estimated. Three chromosomal housekeeping genes (recA, glnII and atpD) and one common symbiotic gene (nodC) were sequenced and analyzed in order to identify the local symbionts of lentil. The molecular phylogeny of the concatenated housekeeping genes clustered more than 95% of the isolates in one main clade together with Rhizobium laguerreae species. R. laguerreae represents the main symbiont of cultivated lentil in Morocco and, for the first time, a large sample of individuals is obtained for this species. There is a significant and high genetic differentiation of bacterial populations among the four regions for their symbiotic gene, and much lower for their housekeeping genes. The reasons why R. laguerreae is so frequently recovered in our study is discussed. Copyright © 2018 Elsevier GmbH. All rights reserved.

The uncultured luminous symbiont of Anomalops katoptron (Beryciformes: Anomalopidae) represents a new bacterial genus.

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Hendry, Tory A; Dunlap, Paul V

2011-12-01

Flashlight fishes (Beryciformes: Anomalopidae) harbor luminous symbiotic bacteria in subocular light organs and use the bacterial light for predator avoidance, feeding, and communication. Despite many attempts anomalopid symbionts have not been brought into laboratory culture, which has restricted progress in understanding their phylogenetic relationships with other luminous bacteria, identification of the genes of their luminescence system, as well as the nature of their symbiotic interactions with their fish hosts. To begin addressing these issues, we used culture-independent analysis of the bacteria symbiotic with the anomalopid fish, Anomalops katoptron, to characterize the phylogeny of the bacteria and to identify the genes of their luminescence system including those involved in the regulation of luminescence. Analysis of the 16S rRNA, atpA, gapA, gyrB, pyrH, recA, rpoA, and topA genes resolved the A. katoptron symbionts as a clade nested within and deeply divergent from other members of Vibrionaceae. The bacterial luminescence (lux) genes were identified as a contiguous set (luxCDABEG), as found for the lux operons of other luminous bacteria. Phylogenetic analysis based on the lux genes confirmed the housekeeping gene phylogenetic placement. Furthermore, genes flanking the lux operon in the A. katoptron symbionts differed from those flanking lux operons of other genera of luminous bacteria. We therefore propose the candidate name Candidatus Photodesmus (Greek: photo = light, desmus = servant) katoptron for the species of bacteria symbiotic with A. katoptron. Results of a preliminary genomic analysis for genes regulating luminescence in other bacteria identified only a Vibrio harveyi-type luxR gene. These results suggest that expression of the luminescence system might be continuous in P. katoptron. Copyright © 2011 Elsevier Inc. All rights reserved.

The dominant detritus-feeding invertebrate in Arctic peat soils derives its essential amino acids from gut symbionts

DEFF Research Database (Denmark)

Larsen, Thomas; Ventura, Marc; Maraldo, Kristine

2016-01-01

insufficiencies of macronutrients such as essential amino acids (EAA). Documenting whether gut symbionts also function as partners for symbiotic EAA supplementation is important because the question of how some detritivores are able to subsist on nutritionally insufficient diets has remained unresolved. 3....... To answer this poorly understood nutritional aspect of symbiont-host interactions, we studied the enchytraeid worm, a bulk soil feeder that thrives in Arctic peatlands. In a combined field and laboratory study, we employed stable isotope fingerprinting of amino acids to identify the biosynthetic origins...... of amino acids to bacteria, fungi and plants in enchytraeids. 4. Enchytraeids collected from Arctic peatlands derived more than 80% of their EAA from bacteria. In a controlled feeding study with the enchytraeid Enchytraeus crypticus, EAA derived almost exclusively from gut bacteria when the worms fed...

Journal bearing

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Menke, John R.; Boeker, Gilbert F.

1976-05-11

1. An improved journal bearing comprising in combination a non-rotatable cylindrical bearing member having a first bearing surface, a rotatable cylindrical bearing member having a confronting second bearing surface having a plurality of bearing elements, a source of lubricant adjacent said bearing elements for supplying lubricant thereto, each bearing element consisting of a pair of elongated relatively shallowly depressed surfaces lying in a cylindrical surface co-axial with the non-depressed surface and diverging from one another in the direction of rotation and obliquely arranged with respect to the axis of rotation of said rotatable member to cause a flow of lubricant longitudinally along said depressed surfaces from their distal ends toward their proximal ends as said bearing members are rotated relative to one another, each depressed surface subtending a radial angle of less than 360.degree., and means for rotating said rotatable bearing member to cause the lubricant to flow across and along said depressed surfaces, the flow of lubricant being impeded by the non-depressed portions of said second bearing surface to cause an increase in the lubricant pressure.

Camshaft bearing arrangement

Energy Technology Data Exchange (ETDEWEB)

Aoi, K.; Ozawa, T.

1986-06-10

A bearing arrangement is described for the camshaft of an internal combustion engine or the like which camshaft is formed along its length in axial order with a first bearing surface, a first cam lobe, a second bearing surface, a second cam lobe, a third bearing surface, a third cam lobe and a fourth bearing surface, the improvement comprising first bearing means extending around substantially the full circumference of the first bearing surface and journaling the first bearing surface, second bearing means extending around substantially less than the circumference of the second bearing surface and journaling the second bearing surface, third bearing means extending around substantially less than the circumference of the third bearing surface and journaling the third bearing surface, and fourth bearing means extending around substantially the full circumference of the fourth bearing surface and journaling the first bearing surface.

16S rRNA gene metabarcoding and TEM reveals different ecological strategies within the genus Neogloboquadrina (planktonic foraminifer.

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Clare Bird

Full Text Available Uncovering the complexities of trophic and metabolic interactions among microorganisms is essential for the understanding of marine biogeochemical cycling and modelling climate-driven ecosystem shifts. High-throughput DNA sequencing methods provide valuable tools for examining these complex interactions, although this remains challenging, as many microorganisms are difficult to isolate, identify and culture. We use two species of planktonic foraminifera from the climatically susceptible, palaeoceanographically important genus Neogloboquadrina, as ideal test microorganisms for the application of 16S rRNA gene metabarcoding. Neogloboquadrina dutertrei and Neogloboquadrina incompta were collected from the California Current and subjected to either 16S rRNA gene metabarcoding, fluorescence microscopy, or transmission electron microscopy (TEM to investigate their species-specific trophic interactions and potential symbiotic associations. 53-99% of 16S rRNA gene sequences recovered from two specimens of N. dutertrei were assigned to a single operational taxonomic unit (OTU from a chloroplast of the phylum Stramenopile. TEM observations confirmed the presence of numerous intact coccoid algae within the host cell, consistent with algal symbionts. Based on sequence data and observed ultrastructure, we taxonomically assign the putative algal symbionts to Pelagophyceae and not Chrysophyceae, as previously reported in this species. In addition, our data shows that N. dutertrei feeds on protists within particulate organic matter (POM, but not on bacteria as a major food source. In total contrast, of OTUs recovered from three N. incompta specimens, 83-95% were assigned to bacterial classes Alteromonadales and Vibrionales of the order Gammaproteobacteria. TEM demonstrates that these bacteria are a food source, not putative symbionts. Contrary to the current view that non-spinose foraminifera are predominantly herbivorous, neither N. dutertrei nor N. incompta

Response of the Miliolid Archaias angulatus to simulated ocean acidification

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Knorr, Paul O.; Robbins, Lisa L.; Harries, Peter J.; Hallock, Pamela; Wynn, Jonathan

2015-01-01

A common, but not universal, effect of ocean acidification on benthic foraminifera is a reduction in the growth rate. The miliolid Archaias angulatus is a high-Mg (>4 mole% MgCO3), symbiont-bearing, soritid benthic foraminifer that contributes to Caribbean reef carbonate sediments. A laboratory culture study assessed the effects of reduced pH on the growth of A. angulatus. We observed a statistically significant 50% reduction in the growth rate (p < 0.01), calculated from changes in maximum diameter, from 160 μm/28 days in the pH 8.0/pCO2air 480 ppm control group to 80 μm/28 days at a treatment level of pH 7.6/pCO2air 1328 ppm. Additionally, pseudopore area, δ18O values, and Mg/Ca ratio all increased, albeit slightly in the latter two variables. The reduction in growth rate indicates that under a high-CO2 setting, future A. angulatus populations will consist of smaller adults. A model using the results of this study estimates that at pH 7.6 A. angulatus carbonate production in the South Florida reef tract and Florida Bay decreases by 85%, from 0.27 Mt/yr to 0.04 Mt/yr, over an area of 9,000 km2.

Benthic foraminifera or Ostracoda? Comparing the accuracy of palaeoenvironmental indicators from a Pleistocene lagoon of the Romagna coastal plain (Italy)

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Barbieri, Giulia; Vaiani, Stefano Claudio

2018-01-01

Integrated analyses of multiple groups of microfossils are frequently performed to unravel the palaeoenvironmental evolution of subsurface coastal successions, where the complex interaction among several palaeoecological factors can be detected with benthic assemblages. This work investigates the palaeoenvironmental resolution potential provided by benthic foraminifera and ostracoda within a Pleistocene lagoonal succession of the Romagna coastal plain (northern Italy). Quantitative approaches and statistical techniques have been applied to both groups in order to understand the main factors that controlled the composition of assemblages and compare the palaeoecological record provided by single fossil groups. The two faunal groups are characterized by the high dominance of opportunistic species (Ammonia tepida-Ammonia parkinsoniana and Cyprideis torosa); however, detailed palaeoecological information is inferred from less common taxa. Benthic foraminiferal assemblages are mainly determined by the frequencies of abnormal individuals and species related to high concentrations of organic matter, showing two assemblages: a stressed assemblage, consistent with a brackish-water environment subject to salinity and oxygen fluctuations, and an unstressed assemblage, which indicates more stable conditions. Despite the lower number of species, ostracoda show more significant differences in terms of species composition and ecological structure between their three assemblages, formed in response to a salinity gradient and indicative of inner, central, and outer lagoon conditions. The stratigraphic distribution of ostracod assemblages shows a general transgressive-regressive trend with minor fluctuations, whereas benthic foraminifera highlight the presence of a significant palaeoenvironmental stress. In this case, the higher abundance along the stratigraphic succession, the higher differentiation of the assemblages, and the well-defined relationship between taxa and ecological

Influence of CH4 and H2S availability on symbiont distribution, carbon assimilation and transfer in the dual symbiotic vent mussel Bathymodiolus azoricus

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R. S. Santos

2008-12-01

Full Text Available High densities of mussels of the genus Bathymodiolus are present at hydrothermal vents of the Mid-Atlantic Ridge. It was previously proposed that the chemistry at vent sites would affect their sulphide- and methane-oxidizing endosymbionts' abundance. In this study, we confirmed the latter assumption using fluorescence in situ hybridization on Bathymodiolus azoricus specimens maintained in a controlled laboratory environment at atmospheric pressure with one, both or none of the chemical substrates. A high level of symbiosis plasticity was observed, methane-oxidizers occupying between 4 and 39% of total bacterial area and both symbionts developing according to the presence or absence of their substrates. Using H13CO3− in the presence of sulphide, or 13CH4, we monitored carbon assimilation by the endosymbionts and its translocation to symbiont-free mussel tissues. Carbon was incorporated from methane and sulphide-oxidized inorganic carbon at rates 3 to 10 times slower in the host muscle tissue than in the symbiont-containing gill tissue. Both symbionts thus contribute actively to B. azoricus nutrition and adapt to the availability of their substrates. Further experiments with varying substrate concentrations using the same set-up should provide useful tools to study and even model the effects of changes in hydrothermal fluids on B. azoricus' chemosynthetic nutrition.

Wolbachia symbiont infections induce strong cytoplasmic incompatibility in the tsetse fly Glossina morsitans.

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Uzma Alam

2011-12-01

Full Text Available Tsetse flies are vectors of the protozoan parasite African trypanosomes, which cause sleeping sickness disease in humans and nagana in livestock. Although there are no effective vaccines and efficacious drugs against this parasite, vector reduction methods have been successful in curbing the disease, especially for nagana. Potential vector control methods that do not involve use of chemicals is a genetic modification approach where flies engineered to be parasite resistant are allowed to replace their susceptible natural counterparts, and Sterile Insect technique (SIT where males sterilized by chemical means are released to suppress female fecundity. The success of genetic modification approaches requires identification of strong drive systems to spread the desirable traits and the efficacy of SIT can be enhanced by identification of natural mating incompatibility. One such drive mechanism results from the cytoplasmic incompatibility (CI phenomenon induced by the symbiont Wolbachia. CI can also be used to induce natural mating incompatibility between release males and natural populations. Although Wolbachia infections have been reported in tsetse, it has been a challenge to understand their functional biology as attempts to cure tsetse of Wolbachia infections by antibiotic treatment damages the obligate mutualistic symbiont (Wigglesworthia, without which the flies are sterile. Here, we developed aposymbiotic (symbiont-free and fertile tsetse lines by dietary provisioning of tetracycline supplemented blood meals with yeast extract, which rescues Wigglesworthia-induced sterility. Our results reveal that Wolbachia infections confer strong CI during embryogenesis in Wolbachia-free (Gmm(Apo females when mated with Wolbachia-infected (Gmm(Wt males. These results are the first demonstration of the biological significance of Wolbachia infections in tsetse. Furthermore, when incorporated into a mathematical model, our results confirm that Wolbachia can

Dark production of extracellular superoxide by the coral Porites astreoides and representative symbionts

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Tong Zhang

2016-11-01

Full Text Available The reactive oxygen species (ROS superoxide has been implicated in both beneficial and detrimental processes in coral biology, ranging from pathogenic disease resistance to coral bleaching. Despite the critical role of ROS in coral health, there is a distinct lack of ROS measurements and thus an incomplete understanding of underpinning ROS sources and production mechanisms within coral systems. Here, we quantified in situ extracellular superoxide concentrations at the surfaces of aquaria-hosted Porites astreoides during a diel cycle. High concentrations of superoxide (~10’s of nM were present at coral surfaces, and these levels did not change significantly as a function of time of day. These results indicate that the coral holobiont produces extracellular superoxide in the dark, independent of photosynthesis. As a short-lived anion at physiological pH, superoxide has a limited ability to cross intact biological membranes. Further, removing surface mucus layers from the P. astreoides colonies did not impact external superoxide concentrations. We therefore attribute external superoxide derived from the coral holobiont under these conditions to the activity of the coral host epithelium, rather than mucus-derived epibionts or internal sources such as endosymbionts (e.g., Symbiodinium. However, endosymbionts likely contribute to internal ROS levels via extracellular superoxide production. Indeed, common coral symbionts, including multiple strains of Symbiodinium (clades A to D and the bacterium Endozoicomonas montiporae LMG 24815, produced extracellular superoxide in the dark and at low light levels. Further, representative P. astreoides symbionts, Symbiodinium CCMP2456 (clade A and E. montiporae, produced similar concentrations of superoxide alone and in combination with each other, in the dark and low light, and regardless of time of day. Overall, these results indicate that healthy, non-stressed P. astreoides and representative symbionts produce

Detection of human bacterial pathogens in ticks collected from Louisiana black bears (Ursus americanus luteolus).

Science.gov (United States)

Leydet, Brian F; Liang, Fang-Ting

2013-04-01

There are 4 major human-biting tick species in the northeastern United States, which include: Amblyomma americanum, Amblyomma maculatum, Dermacentor variabilis, and Ixodes scapularis. The black bear is a large mammal that has been shown to be parasitized by all the aforementioned ticks. We investigated the bacterial infections in ticks collected from Louisiana black bears (Ursus americanus subspecies luteolus). Eighty-six ticks were collected from 17 black bears in Louisiana from June 2010 to March 2011. All 4 common human-biting tick species were represented. Each tick was subjected to polymerase chain reaction (PCR) targeting select bacterial pathogens and symbionts. Bacterial DNA was detected in 62% of ticks (n=53). Rickettsia parkeri, the causative agent of an emerging spotted fever group rickettsiosis, was identified in 66% of A. maculatum, 28% of D. variabilis, and 11% of I. scapularis. The Lyme disease bacterium, Borrelia burgdorferi, was detected in 2 I. scapularis, while one A. americanum was positive for Borrelia bissettii, a putative human pathogen. The rickettsial endosymbionts Candidatus Rickettsia andeanae, rickettsial endosymbiont of I. scapularis, and Rickettsia amblyommii were detected in their common tick hosts at 21%, 39%, and 60%, respectively. All ticks were PCR-negative for Anaplasma phagocytophilum, Ehrlichia spp., and Babesia microti. This is the first reported detection of R. parkeri in vector ticks in Louisiana; we also report the novel association of R. parkeri with I. scapularis. Detection of both R. parkeri and B. burgdorferi in their respective vectors in Louisiana demands further investigation to determine potential for human exposure to these pathogens. Copyright © 2013 Elsevier GmbH. All rights reserved.

Biomonitoring polluted sediments in Arctic regions - possibilities and challenges using benthic foraminifera. Case studies from northern Norway

Science.gov (United States)

Skirbekk, Kari; Dijkstra, Noortje; Junttila, Juho; Sternal, Beata; Pedersen, Kristine Bondo; Forwick, Matthias; Carroll, JoLynn

2016-04-01

Biomonitoring pollution in marine environments using benthic foraminifera assemblages have proven to be a valid method for many regions. Two important reasons for their suitability are their sensitivity to changes in the environment and their rapid response time due to short life cycles. In addition, they are preserved in the sedimentary record, allowing for baseline studies of conditions prior to introduction of contaminants. Species of benthic foraminifera that appear to tolerate polluted sediments are referred to as opportunistic species. This notion is in general used for species able to dominate environments that are too stressful for most species. The high latitude setting of the northern Norwegian coastal zone experience high seasonality and, hence, largely changing conditions throughout a year: variations in water mass domination, freshwater influence, temperature and current velocity. It is possible that an environment like this is inhibited by a higher amount of opportunistic species generally thriving under high stress conditions. This might make the use of benthic foraminifera for biomonitoring more challenging, as the faunal compositions may be a result of a complex set of processes. Consequently, large datasets are necessary in order to make reliable conclusions, which in time may be used as generalized guidelines for biomonitoring in this geographical area. Here, we present preliminary results of benthic foraminiferal assemblages from two sites in Finnmark, northern Norway, which have been exposed to pollution. The main site is Repparfjorden, where the inner parts of the fjord were used as a submarine waste deposal site for mine tailings from a local copper mine during the 1970´s. Results from four marine sediment cores (10-20 cm long) containing sediments classified to be in moderate to very bad state (according to Norwegian sediment quality criteria) are presented. The contamination is seen in intervals of elevated copper content dated to the 1970

Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica.

Directory of Open Access Journals (Sweden)

Alga Zuccaro

2011-10-01

Full Text Available Recent sequencing projects have provided deep insight into fungal lifestyle-associated genomic adaptations. Here we report on the 25 Mb genome of the mutualistic root symbiont Piriformospora indica (Sebacinales, Basidiomycota and provide a global characterization of fungal transcriptional responses associated with the colonization of living and dead barley roots. Extensive comparative analysis of the P. indica genome with other Basidiomycota and Ascomycota fungi that have diverse lifestyle strategies identified features typically associated with both, biotrophism and saprotrophism. The tightly controlled expression of the lifestyle-associated gene sets during the onset of the symbiosis, revealed by microarray analysis, argues for a biphasic root colonization strategy of P. indica. This is supported by a cytological study that shows an early biotrophic growth followed by a cell death-associated phase. About 10% of the fungal genes induced during the biotrophic colonization encoded putative small secreted proteins (SSP, including several lectin-like proteins and members of a P. indica-specific gene family (DELD with a conserved novel seven-amino acids motif at the C-terminus. Similar to effectors found in other filamentous organisms, the occurrence of the DELDs correlated with the presence of transposable elements in gene-poor repeat-rich regions of the genome. This is the first in depth genomic study describing a mutualistic symbiont with a biphasic lifestyle. Our findings provide a significant advance in understanding development of biotrophic plant symbionts and suggest a series of incremental shifts along the continuum from saprotrophy towards biotrophy in the evolution of mycorrhizal association from decomposer fungi.

Glacial-interglacial changes in the surface water characteristics of the Andaman Sea: Evidence from stable isotopic ratios of planktonic foraminifera

Digital Repository Service at National Institute of Oceanography (India)

Ahmad, S.M.; Patil, D.J.; Rao, P.S.; Nath, B.N.; Rao, B.R.; Rajagopalan, G.

; Nature 343 549--551 Shackleton N J 1974 Attainment of isotopic equilibrium between ocean water and benthonic foraminifera genus Uvigerina: Isotopic changes in the ocean during the last glacial; In: Les Methodes quantitatives d'etude des variation du... climat au cours du pleistocene. Coll. Int. CNRS Paris 119 203--210 156 S M Ahmad et al ...

Multi-omics analysis of thermal stress response in a zooxanthellate cnidarian reveals the importance of associating with thermotolerant symbionts

KAUST Repository

Cziesielski, Maha J.

2018-04-18

Corals and their endosymbiotic dinoflagellates of the genus Symbiodinium have a fragile relationship that breaks down under heat stress, an event known as bleaching. However, many coral species have adapted to high temperature environments such as the Red Sea (RS). To investigate mechanisms underlying temperature adaptation in zooxanthellate cnidarians we compared transcriptome- and proteome-wide heat stress response (24 h at 32°C) of three strains of the model organism Aiptasia pallida from regions with differing temperature profiles; North Carolina (CC7), Hawaii (H2) and the RS. Correlations between transcript and protein levels were generally low but inter-strain comparisons highlighted a common core cnidarian response to heat stress, including protein folding and oxidative stress pathways. RS anemones showed the strongest increase in antioxidant gene expression and exhibited significantly lower reactive oxygen species (ROS) levels in hospite However, comparisons of antioxidant gene and protein expression between strains did not show strong differences, indicating similar antioxidant capacity across the strains. Subsequent analysis of ROS production in isolated symbionts confirmed that the observed differences of ROS levels in hospite were symbiont-driven. Our findings indicate that RS anemones do not show increased antioxidant capacity but may have adapted to higher temperatures through association with more thermally tolerant symbionts.

Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change

KAUST Repository

Hume, Benjamin C. C.

2016-04-05

Coral communities in the Persian/Arabian Gulf (PAG) withstand unusually high salinity levels and regular summer temperature maxima of up to ∼35 °C that kill conspecifics elsewhere. Due to the recent formation of the PAG and its subsequent shift to a hot climate, these corals have had only <6, 000 y to adapt to these extreme conditions and can therefore inform on how coral reefs may respond to global warming. One key to coral survival in the world\\'s warmest reefs are symbioses with a newly discovered alga, Symbiodinium thermophilum. Currently, it is unknown whether this symbiont originated elsewhere or emerged from unexpectedly fast evolution catalyzed by the extreme environment. Analyzing genetic diversity of symbiotic algae across >5, 000 km of the PAG, the Gulf of Oman, and the Red Sea coastline, we show that S. thermophilum is a member of a highly diverse, ancient group of symbionts cryptically distributed outside the PAG. We argue that the adjustment to temperature extremes by PAG corals was facilitated by the positive selection of preadapted symbionts. Our findings suggest that maintaining the largest possible pool of potentially stress-tolerant genotypes by protecting existing biodiversity is crucial to promote rapid adaptation to present-day climate change, not only for coral reefs, but for ecosystems in general.

Multi-omics analysis of thermal stress response in a zooxanthellate cnidarian reveals the importance of associating with thermotolerant symbionts

KAUST Repository

Cziesielski, Maha J.; Liew, Yi Jin; Cui, Guoxin; Schmidt-Roach, Sebastian; Campana, Sara; Marondedze, Claudius; Aranda, Manuel

2018-01-01

Corals and their endosymbiotic dinoflagellates of the genus Symbiodinium have a fragile relationship that breaks down under heat stress, an event known as bleaching. However, many coral species have adapted to high temperature environments such as the Red Sea (RS). To investigate mechanisms underlying temperature adaptation in zooxanthellate cnidarians we compared transcriptome- and proteome-wide heat stress response (24 h at 32°C) of three strains of the model organism Aiptasia pallida from regions with differing temperature profiles; North Carolina (CC7), Hawaii (H2) and the RS. Correlations between transcript and protein levels were generally low but inter-strain comparisons highlighted a common core cnidarian response to heat stress, including protein folding and oxidative stress pathways. RS anemones showed the strongest increase in antioxidant gene expression and exhibited significantly lower reactive oxygen species (ROS) levels in hospite However, comparisons of antioxidant gene and protein expression between strains did not show strong differences, indicating similar antioxidant capacity across the strains. Subsequent analysis of ROS production in isolated symbionts confirmed that the observed differences of ROS levels in hospite were symbiont-driven. Our findings indicate that RS anemones do not show increased antioxidant capacity but may have adapted to higher temperatures through association with more thermally tolerant symbionts.

Quantification of bacterial and archaeal symbionts in high and low microbial abundance sponges using real-time PCR

KAUST Repository

Bayer, Kristina

2014-07-09

In spite of considerable insights into the microbial diversity of marine sponges, quantitative information on microbial abundances and community composition remains scarce. Here, we established qPCR assays for the specific quantification of four bacterial phyla of representative sponge symbionts as well as the kingdoms Eubacteria and Archaea. We could show that the 16S rRNA gene numbers of Archaea, Chloroflexi, and the candidate phylum Poribacteria were 4-6 orders of magnitude higher in high microbial abundance (HMA) than in low microbial abundance (LMA) sponges and that actinobacterial 16S rRNA gene numbers were 1-2 orders higher in HMA over LMA sponges, while those for Cyanobacteria were stable between HMA and LMA sponges. Fluorescence in situ hybridization of Aplysina aerophoba tissue sections confirmed the numerical dominance of Chloroflexi, which was followed by Poribacteria. Archaeal and actinobacterial cells were detected in much lower numbers. By use of fluorescence-activated cell sorting as a primer- and probe-independent approach, the dominance of Chloroflexi, Proteobacteria, and Poribacteria in A. aerophoba was confirmed. Our study provides new quantitative insights into the microbiology of sponges and contributes to a better understanding of the HMA/LMA dichotomy. The authors quantified sponge symbionts in eight sponge species from three different locations by real time PCR targetting 16S rRNA genes. Additionally, FISH was performed and diversity and abundance of singularized microbial symbionts from Aplysina aerophoba was determined for a comprehensive quantification work. © 2014 Federation of European Microbiological Societies.

Discordant coral-symbiont structuring: factors shaping geographical variation of Symbiodinium communities in a facultative zooxanthellate coral genus, Oculina

Science.gov (United States)

Leydet, Karine Posbic; Hellberg, Michael E.

2016-06-01

Understanding the factors that help shape the association between corals and their algal symbionts, zooxanthellae ( Symbiodinium), is necessary to better understand the functional diversity and acclimatization potential of the coral host. However, most studies focus on tropical zooxanthellate corals and their obligate algal symbionts, thus limiting our full comprehension of coral-algal symbiont associations. Here, we examine algal associations in a facultative zooxanthellate coral. We survey the Symbiodinium communities associated with Oculina corals in the western North Atlantic and the Mediterranean using one clade-level marker ( psbA coding region) and three fine-scale markers ( cp23S- rDNA, b7sym15 flanking region, and b2sym17). We ask whether Oculina spp. harbor geographically different Symbiodinium communities across their geographic range and, if so, whether the host's genetics or habitat differences are correlated with this geographical variation. We found that Oculina corals harbor different Symbiodinium communities across their geographical range. Of the habitat differences (including chlorophyll a concentration and depth), sea surface temperature is better correlated with this geographical variation than the host's genetics, a pattern most evident in the Mediterranean. Our results suggest that although facultative zooxanthellate corals may be less dependent on their algal partners compared to obligate zooxanthellate corals, the Symbiodinium communities that they harbor may nevertheless reflect acclimatization to environmental variation among habitats.

Foraminifera eco-biostratigraphy of the southern Evoikos outer shelf, central Aegean Sea, during MIS 5 to present

Science.gov (United States)

Drinia, Hara; Antonarakou, Assimina; Tsourou, Theodora; Kontakiotis, George; Psychogiou, Maria; Anastasakis, George

2016-09-01

The South Evoikos Basin is a marginal basin in the Aegean Sea which receives little terrigenous supply and its sedimentation is dominated by hemipelagic processes. Late Quaternary benthic and planktonic foraminifera from core PAG-155 are investigated in order to understand their response to the glacial-interglacial cycles in this region. The quantitative analysis of planktonic foraminifera, coupled with accelerator mass spectrometry (14C-AMS) radiocarbon date measurements, provide an integrated chrono-stratigraphic time framework over the last 90 ka (time interval between late Marine Isotopic Stages 5 and 1; MIS5-MIS1). The temporary appearance and disappearance as well as several abundance peaks in the quantitative distribution of selected climate-sensitive planktonic species allowed the identification of several eco-bioevents, useful to accurately mark the boundaries of the eco-biozones widely recognized in the Mediterranean records and used for large-scale correlations. The established bio-ecozonation scheme allows a detailed palaecological reconstruction for the late Pleistocene archive in the central Aegean, and furthermore provides a notable contribution for palaeoclimatic studies, facilitating intercorrelations between various oceanographic basins. The quantitative analyses of benthic foraminifera identify four distinct assemblages, namely Biofacies: Elphidium spp., Haynesina spp. Biofacies, characterized by neritic species, dominated during the transition from MIS 5 to MIS 4; Cassidulina laevigata/carinata Biofacies dominated till 42 ka (transgressive trend from MIS 4 to MIS 3); Bulimina gibba Biofacies dominated from 42 ka to 9.5 ka (extensive regression MIS 3,2 through lowstand and early transgression; beginning of MIS 1); Bulimina marginata, Uvigerina spp. Biofacies dominated from 9.5 ka to the present (late transgression through early highstand; MIS 1)., This study showed that the South Evoikos Basin which is characterized by its critical depths and

Arrival and expansion of the invasive foraminifera Trochammina hadai Uchio in Padilla Bay, Washington

Science.gov (United States)

McGann, Mary; Grossman, Eric E.; Takesue, Renee K.; Penttila, Dan; Walsh, John P.; Corbett, Reide

2012-01-01

Trochammina hadai Uchio, a benthic foraminifera native to Japanese estuaries, was first identified as an invasive in 1995 in San Francisco Bay and later in 16 other west coast estuaries. To investigate the timing of the arrival and expansion of this invasive species in Padilla Bay, Washington, we analyzed the distribution of foraminifera in two surface samples collected in 1971, in nine surface samples collected by Scott in 1972–1973, as well as in two cores (Padilla Flats 3 and Padilla V1/V2) obtained in 2004. Trochanimina hadai, originally identified as the native Trochammina pacifica Cushman in several early foraminiferal studies, dominates the assemblage of most of the surface samples. In the Padilla V1/V2 and Padilla Flats 3 cores, the species' abundance follows a pattern of absence, first appearance, rapid expansion commonly seen shortly after the arrival of a successful biological invasion, setback, and second expansion. Using Q-mode cluster analysis, pre-expansion and expansion assemblages were identified. Pb-210 dating of these cores proved unsuccessful. However, based on T. hadai's first appearance occurring stratigraphically well above sedimentological changes in the cores that reflect deposition of sediments in the bay due to previous diversions of the Skagit River, and its dominance in the early 1970s surface samples, we conclude that the species arrived in Padilla Bay somewhere between the late 1800s and 1971. Trochammina hadai may have been introduced into the bay in the 1930s when oyster culturing began there or, at a minimum, ten years prior to its appearance in San Francisco Bay.

Spallation symbiont and thorium breeding

International Nuclear Information System (INIS)

Furukawa, Kazuo

1991-01-01

The medium term world energy and environment countermeasures for 2020-2070 are not yet clearly established. The forecast of energy situation hereafter, its problems and the measures for solution are considered. World trend is removing borders, and the north-south problems are increasing the importance. The rational and clear idea with the support of concrete technology is required. The demand of energy will increase enormously at the annual rate of 2.3%. The world energy situation was forecast considering the increase of population, and it will be 115 TW at the end of the next century. The present status, problems and the countermeasures in nuclear fission energy technology are explained. The countermeasures should be based on three principles, namely Th-U-233 cycle, the utilization of molten fluoride fuel medium and the separation of molten salt breeders and molten salt reactors. Accelerator molten salt breeders, small molten salt reactors, the nuclear fuel cycle and the annihilation process for radioactive wastes are reported. The perspective that the nuclear energy system, in which the reactor safety, the measures to wastes and others are improved by the spallation-fission symbiont using thorium molten salt as the working medium, can be constructed is shown. (K.I.)

Benthic foraminifera cultured over a large salinity gradient: first results and comparison with field data from the Baltic Sea.

Science.gov (United States)

Groeneveld, Jeroen; Filipsson, Helena L.; Austin, William E. N.; Darling, Kate; Quintana Krupinski, Nadine B.

2015-04-01

Some of the most significant challenges in paleoclimate research arise from the need to both understand and reduce the uncertainty associated with proxy methods for climate reconstructions. This is especially important for shelf and coastal environments where increasing numbers of high-resolution paleorecords are being generated. These challenges are further highlighted in connection with ECORD/IODP Expedition 347: Baltic Sea Paleoenvironments. This large-scale drilling operation took place in the Baltic Sea region during the autumn of 2013. At this time, there is a pressing need for proxy calibrations directly targeted at the brackish Baltic environment. Within the CONTEMPORARY project we are investigating different temperature and salinity proxy variables through a combination of field- and culture-based benthic foraminiferal samples, together with genetic characterization (genotyping) of the morphospecies. We have completed two field campaigns where we collected (living) foraminifera and water samples at several sites, ranging from fully marine to low salinity conditions. The core-top foraminifera have been analysed for trace metal/Ca, stable oxygen and carbon isotopes, and faunal composition. Living foraminifera collected from the sediment-water interface were cultured in sea water in two long-term experiments at different temperatures (5°C and 10°C) and at three different salinities (15, 25, and 35). The first experiment yielded a large number of reproduced and experimentally-grown Elphidium specimens. The second experiment resulted in growth but no reproduction. We will provide a summary of the experimentally grown material and discuss the challenges of generating new proxy calibrations for foraminiferal shell geochemistry in the Baltic Sea. Furthermore, specimens of Elphidium and Ammonia, found at two sampling sites (Anholt, Kattegat and Hanöbay) with differing salinities, were genotyped and the results indicate that the same genotype of Elphidium is

THE ROLE OF BACTERIAL SYMBIONTS IN AMINO ACID COMPOSITION OF BLACK BEAN APHIDS

Institute of Scientific and Technical Information of China (English)

MingGan; De-ChengDing; Xue-xiaMiao

2003-01-01

To evaluate the role of bacterial symbionts ( Buchnera spp. ) in the black bean aphids ( Aphis craccivora Koch), the aphids were treated with the antibiotic, rifampicin, to eliminate their intracellular symbiotic bacteria. Analysis of protein and amino acid concentration in 7-day-old of aposymbiotic aphids showed that the total protein content per mg fresh weight was significantly reduced by 29 %, but free amino acid titers were increased by 17% . The ratio of the essential amino acids was in general only around 20% essential amino acids in phloem sap of broad bean, whereas it was 44% and 37% in symbiotic and aposymbiotic aphids, respectively,suggesting that the composition of the free amino acids was unbalanced. For example, the essential amino acid,threonine represented 21. 6% of essential amino acids in symbiotic aphids, but it was only 16.7% in aposymbiotic aphids. Likewise, two nonessential amino acids, tyrosine and serine, represented 8.9% and 5.6% of total amino acids in symbiontic aphids, respectively, but they enhanced to 21.1% and 13.6% in aposymbiotic aphids. It seems likely that the elevated free amino acid concentration in aposymbiotic aphids was caused by the limited protein anabolism as the result of the unbalanced amino acid composition.

Conditional Reduction of Predation Risk Associated with a Facultative Symbiont in an Insect.

Directory of Open Access Journals (Sweden)

Sarah Polin

Full Text Available Symbionts are widespread among eukaryotes and their impacts on the ecology and evolution of their hosts are meaningful. Most insects harbour obligate and facultative symbiotic bacteria that can influence their phenotype. In the pea aphid Acyrthosiphon pisum, an astounding symbiotic-mediated phenotype has been recently observed: when infected with the symbiotic bacteria Rickettsiella viridis, young red aphid larvae become greener at adulthood and even darker green when co-infected with Rickettsiella viridis and Hamiltonella defensa. As body colour affects the susceptibility towards natural enemies in aphids, the influence of the colour change due to these facultative symbionts on the host survival in presence of predators was tested. Our results suggested that the Rickettsiella viridis infection may impact positively host survival by reducing predation risk. Due to results from uninfected aphids (i.e., more green ones attacked, the main assumption is that this symbiotic infection would deter the predatory ladybird feeding by reducing the profitability of their hosts rather than decreasing host detection through body colour change. Aphids co-infected with Rickettsiella viridis and Hamiltonella defensa were, however, more exposed to predation suggesting an ecological cost associated with multiple infections. The underlying mechanisms and ecological consequences of these symbiotic effects are discussed.

Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance

Energy Technology Data Exchange (ETDEWEB)

Coleman-Derr, Devin [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Tringe, Susannah G. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

2014-06-06

The exponential growth in world population is feeding a steadily increasing global need for arable farmland, a resource that is already in high demand. This trend has led to increased farming on subprime arid and semi-arid lands, where limited availability of water and a host of environmental stresses often severely reduce crop productivity. The conventional approach to mitigating the abiotic stresses associated with arid climes is to breed for stress-tolerant cultivars, a time and labor intensive venture that often neglects the complex ecological context of the soil environment in which the crop is grown. In recent years, studies have attempted to identify microbial symbionts capable of conferring the same stress-tolerance to their plant hosts, and new developments in genomic technologies have greatly facilitated such research. Here in this paper, we highlight many of the advantages of these symbiont-based approaches and argue in favor of the broader recognition of crop species as ecological niches for a diverse community of microorganisms that function in concert with their plant hosts and each other to thrive under fluctuating environmental conditions

Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance

Directory of Open Access Journals (Sweden)

Devin eColeman-Derr

2014-06-01

Full Text Available The exponential growth in world population is feeding a steadily increasing global need for arable farmland, a resource that is already in high demand. This trend has led to increased farming on subprime arid and semi-arid lands, where limited availability of water and a host of environmental stresses often severely reduce crop productivity. The conventional approach to mitigating the abiotic stresses associated with arid climes is to breed for stress-tolerant cultivars, a time and labor intensive venture that often neglects the complex ecological context of the soil environment in which the crop is grown. In recent years, studies have attempted to identify microbial symbionts capable of conferring the same stress-tolerance to their plant hosts, and new developments in genomic technologies have greatly facilitated such research. Here, we highlight many of the advantages of these symbiont-based approaches and argue in favor of the broader recognition of crop species as ecological niches for a diverse community of microorganisms that function in concert with their plant hosts and each other to thrive under fluctuating environmental conditions.

The functional significance of the spinose keel structure of benthic foraminifera: inferences from Miliolina cristata Millett, 1898 (Miliolida) from northeast Romania

Science.gov (United States)

Dumitriţa Dumitriu, Simina; Dubicka, Zofia; Ionesi, Viorel

2018-01-01

The paper presents Miocene (lower Sarmatian) benthic foraminifera from the FH3P1 Rădăuţi Core section from the northwestern part of the Moldavian Platform, Romania. Based on foraminiferal assemblages we infer sediments were deposited in shallow-water, including marine-marginal environments, of varying salinities from brackish to normal marine with some short and rather small sea-level changes. Moreover, we describe for the first time in the Moldavian Platform a very rare species, Miliolina cristata Millett, which presents a characteristic spinose keel. Based on a detailed study of the test morphology and its variability, observed in picked material as well as in thin sections, we discuss some palaeoecological aspects of these foraminifera. M. cristata probably does not constitute a distinctive species, but it is more probable that some miliolid taxa developed such an exoskeletal feature in response to new environmental conditions, such as more turbulent water. Accordingly, our study would support the thesis that one of the functions of the benthic foraminiferal spines is to stabilize foraminiferal tests found in sandy substrates from high-energy environments.

Grizzly bear

Science.gov (United States)

Schwartz, C.C.; Miller, S.D.; Haroldson, M.A.; Feldhamer, G.; Thompson, B.; Chapman, J.

2003-01-01

The grizzly bear inspires fear, awe, and respect in humans to a degree unmatched by any other North American wild mammal. Like other bear species, it can inflict serious injury and death on humans and sometimes does. Unlike the polar bear (Ursus maritimus) of the sparsely inhabited northern arctic, however, grizzly bears still live in areas visited by crowds of people, where presence of the grizzly remains physically real and emotionally dominant. A hike in the wilderness that includes grizzly bears is different from a stroll in a forest from which grizzly bears have been purged; nighttime conversations around the campfire and dreams in the tent reflect the presence of the great bear. Contributing to the aura of the grizzly bear is the mixture of myth and reality about its ferocity. unpredictable disposition, large size, strength, huge canines, long claws, keen senses, swiftness, and playfulness. They share characteristics with humans such as generalist life history strategies. extended periods of maternal care, and omnivorous diets. These factors capture the human imagination in ways distinct from other North American mammals. Precontact Native American legends reflected the same fascination with the grizzly bear as modern stories and legends (Rockwell 1991).

Species dominance and equitability: patterns in Cenozoic foraminifera of eastern North America

Science.gov (United States)

Gibson, T.G.; Hill, E.E.

1992-01-01

Species dominance in benthonic foraminifera, represented by percent of the assemblage composed of the single most abundant species, shows little change in observed range of values from shallow into deep-marine waters in 1005 samples from the Gulf of Mexico, Atlantic, and Arctic margins of North America. This finding contrasts with the model that species dominance is highest in shallow-marine environments and decreases offshore into deeper marine waters. Equitability, the relation of all species abundances within an assemblage, also shows little change between the values found in shallow-marine assemblages and those found in assemblages from deeper water environments. Equitability and dominance values found in 421 assemblages from Palaeocene, Eocene, Miocene, and Pleistocene strata of the Atlantic and E Gulf of Mexico coastal plains are similar to the modern values. -from Authors

Foraminifera and Thecamoebians as hydrodynamic indicators for Amazon estuarine system

Science.gov (United States)

Laut, L. L.; Figueiredo, A. G.; Santos, V. F.; Souza-Vieira, S.

2007-05-01

The Amazon mangrove forest in Brazilian territory is one of the most extended in the world. It goes from Ponta do Tubarao (4S e 43W) to Cape Orange (5N e 51W) along 2,250 km of coast line. Because the Amazon River System influence, it can be divided into two regions; one with river influence toward north and the other without river influence. In order to characterize the mangrove environment hydrodynamic on both sides of the Amazon River System, foraminifera and thecamoebians assemblages were investigated in the sediment of two estuaries; Araguari to the North (1 15S - 50 30W) and Caete to the South (0 50S - 46 30W). For both estuaries forams and thecamoebians species distribution are atypical relative to other world regions. In both, there are only few calcareous forams and almost all are small and possible of being transported in suspension. Typical estuarine species were not identified. The typical mangrove forams which are agglutinated species were dominant in both estuaries. However, the Caete estuary has a large number of forams species (29), indicating better efficiency in mixing fresh and salt water in comparison to the Araguari. On the other hand, the Araguari has big richness of thecamoebians species (15) indicating fresh water prevalence. The fresh water predominance is due to the Amazon water plume being diverted to the Amapa coast where the Araguari estuary is located. The foraminifera species was also used to determine the salt water penetration in the estuary. In the Caete estuary, salt water penetrates to about 40 km while in the Araguari it does coincide with the limit of the bore tide wave "pororoca" penetration, 45 km. Based on the species succession (forams to thecamoebians species) the Araguary estuary can be divided into three regions controlled by turbidity: the outer, middle and inner estuary. The Caete species succession is not that clear and only could be divided based on salinity into outer and inner estuary. In both estuaries forams and

Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts

DEFF Research Database (Denmark)

Liberti, Joanito; Sapountzis, Panagiotis; Hansen, Lars H.

2015-01-01

nests such as consumption of the same fungus garden food, eating of host brood by social parasites, trophallaxis and grooming interactions between the ants, or parallel acquisition from the same nest environment. Our results imply that cohabiting ant social parasites and hosts may obtain functional...... benefits from bacterial symbiont transfer even when they are not closely related....

Benthic foraminifera as tools in interpretation of subsurface hydrocarbon fluid flow at Veslemøy High and Hola-Vesterålen areas of the Barents Sea.

Science.gov (United States)

Baranwal, Soma; Sauer, Simone; Knies, Jochen; Chand, Shyam; Jensen, Henning; Klug, Martin

2014-05-01

Relatively few studies have focused on high-latitude benthic foraminifera related to hydrocarbon seeps. In this study, we present micropaleontological data from 8 gravity cores from the Veslemøy High and 4 surface sediments (0-1cm) from Hola-Vesterålen, Norway. The study of hydrocarbon impregnation and its effect on benthic foraminfera was conducted on selected sediment samples from the calcium-rich Holocene sediments of the Veslemøy High. The assemblage of foraminifera have been identified from three regional clusters. Cluster I and II are dominated by benthic foraminifera Buccella, Cassidulina, Cibicides, Discopulvinulina, Epistominella, Pullenia and Trifarina. Cluster III is distinct with an elevated abundance of Cassidulina, Cibicides and Trifarina with significant (>5 %) occurrence of Nonionella and Uvigerina. There is no apparent dissolution on the preserved foraminifera. However, there can be differential dissolution or destruction of the more fragile (thinner-walled test) species like Epistominella, Nonionella or Pullenia while leaving behind over-represented species like Cibicides or Trifarina (both preferring coarse grained, high energy areas that can withstand permanent winnowing and redeposition) with higher preservation potential. Also, Cluster III is placed right over the underlying fault line with shallow seep-indications and thus the fluids released may have induced the dissolution of the fragile species. Moreover, the significant occurrence of benthic foraminifera Nonionella auris, and Uvigerina peregrina, in Holocene deposits of Cluster III may be indicative of environments influenced by hydrocarbon migration to the seafloor. Previous studies have reported active natural hydrocarbon seepage in the Hola area and the stable carbon and hydrogen isotopic composition of methane in the sediments suggests a predominantly thermogenic methane source. The seep-assemblage is composed of Cibicides (~60%), Cassidulina, Discanomalina, Textularia and

Boron isotope-based seasonal paleo-pH reconstruction for the Southeast Atlantic - A multispecies approach using habitat preference of planktonic foraminifera

Science.gov (United States)

Raitzsch, Markus; Bijma, Jelle; Benthien, Albert; Richter, Klaus-Uwe; Steinhoefel, Grit; Kučera, Michal

2018-04-01

The boron isotopic composition of planktonic foraminiferal shell calcite (δ11BCc) provides valuable information on the pH of ambient water at the time of calcification. Hence, δ11BCc of fossil surface-dwelling planktonic foraminifera can be used to reconstruct ancient aqueous pCO2 if information on a second carbonate system parameter, temperature and salinity is available. However, pH and pCO2 of surface waters may vary seasonally, largely due to changes in temperature, DIC, and alkalinity. As also the shell fluxes of planktonic foraminifera show species-specific seasonal patterns that are linked to intra-annual changes in temperature, it is obvious that δ11BCc of a certain species reflects the pH and thus pCO2 biased towards a specific time period within a year. This is important to consider for the interpretation of fossil δ11BCc records that may mirror seasonal pH signals. Here we present new Multi-Collector Inductively Coupled Mass Spectrometry (MC-ICPMS) δ11BCc coretop data for the planktonic foraminifera species Globigerina bulloides, Globigerinoides ruber, Trilobatus sacculifer and Orbulina universa and compare them with δ11Bborate derived from seasonally resolved carbonate system parameters. We show that the inferred season-adjusted δ11BCc /δ11Bborate relationships are similar to existing calibrations and can be combined with published δ11BCc field and culture data to augment paleo-pH calibrations. To test the applicability of these calibrations, we used a core drilled on the Walvis Ridge in the Southeast Atlantic spanning the last 330,000 years to reconstruct changes in surface-water pCO2. The reconstruction based on G. bulloides, which reflects the austral spring season, was shown to yield values that closely resemble the Vostok ice-core data indicating that surface-water pCO2 was close to equilibrium with the atmosphere during the cooler spring season. In contrast, pCO2 estimated from δ11BCc of O. universa, T. sacculifer and G. ruber that

77 FR 70423 - Black Bear Hydro Partners, LLC and Black Bear Development Holdings, LLC and Black Bear SO, LLC...

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2012-11-26

... Bear Hydro Partners, LLC and Black Bear Development Holdings, LLC and Black Bear SO, LLC; Notice of..., 2012, Black Bear Hydro Partners, LLC, sole licensee (transferor) and Black Bear Development Holdings, LLC and Black Bear SO, LLC (transferees) filed an application for the partial the transfer of licenses...

Phylogeography of mitochondrial DNA variation in brown bears and polar bears.

Science.gov (United States)

Shields, G F; Adams, D; Garner, G; Labelle, M; Pietsch, J; Ramsay, M; Schwartz, C; Titus, K; Williamson, S

2000-05-01

We analyzed 286 nucleotides of the middle portion of the mitochondrial cytochrome b gene of 61 brown bears from three locations in Alaska and 55 polar bears from Arctic Canada and Arctic Siberia to test our earlier observations of paraphyly between polar bears and brown bears as well as to test the extreme uniqueness of mitochondrial DNA types of brown bears on Admiralty, Baranof, and Chichagof (ABC) islands of southeastern Alaska. We also investigated the phylogeography of brown bears of Alaska's Kenai Peninsula in relation to other Alaskan brown bears because the former are being threatened by increased human development. We predicted that: (1) mtDNA paraphyly between brown bears and polar bears would be upheld, (2) the mtDNA uniqueness of brown bears of the ABC islands would be upheld, and (3) brown bears of the Kenai Peninsula would belong to either clade II or clade III of brown bears of our earlier studies of mtDNA. All of our predictions were upheld through the analysis of these additional samples. Copyright 2000 Academic Press.

Phylogeography of mitochondrial DNA variation in brown bears and polar bears

Science.gov (United States)

Shields, Gerald F.; Adams, Deborah; Garner, Gerald W.; Labelle, Martine; Pietsch, Jacy; Ramsay, Malcolm; Schwartz, Charles; Titus, Kimberly; Williamson, Scott

2000-01-01

We analyzed 286 nucleotides of the middle portion of the mitochondrial cytochrome b gene of 61 brown bears from three locations in Alaska and 55 polar bears from Arctic Canada and Arctic Siberia to test our earlier observations of paraphyly between polar bears and brown bears as well as to test the extreme uniqueness of mitochondrial DNA types of brown bears on Admiralty, Baranof, and Chichagof (ABC) islands of southeastern Alaska. We also investigated the phylogeography of brown bears of Alaska's Kenai Peninsula in relation to other Alaskan brown bears because the former are being threatened by increased human development. We predicted that: (1) mtDNA paraphyly between brown bears and polar bears would be upheld, (2) the mtDNA uniqueness of brown bears of the ABC islands would be upheld, and (3) brown bears of the Kenai Peninsula would belong to either clade II or clade III of brown bears of our earlier studies of mtDNA. All of our predictions were upheld through the analysis of these additional samples.

Deglacial Western Equatorial Pacific pCO2 Reconstruction Using Boron Isotopes of Planktonic Foraminiferas

Science.gov (United States)

Kubota, K.; Yokoyama, Y.; Ishikawa, T.; Sagawa, T.; Ikehara, M.; Yamazaki, T.

2017-12-01

During the last deglaciation (ca. 19 - 11 ka), partial pressure of CO2 (pCO2) of the atmosphere increased by 80 μatm. Many paleoceanographers point out that the ocean had played an important role in atmospheric CO2 rise, since the ocean have 60 times larger capacity to store carbon compared to the atmosphere. However, evidence on where carbon was transferred from the ocean to the atmosphere is still lacking, hampering our understanding of global carbon cycles in glacial-interglacial timescales. Boron isotope of skeletons of marine calcifying organisms such as corals and foraminiferas can pin down where CO2 source/sink existed, because boron isotopes of marine calcium carbonates is dependent on seawater pH, from which pCO2 of the past seawater can be reconstructed. In previous studies using the boron isotope teqnique, Martinez-Boti et al. (2015, Nature) and Kubota et al. (2014, Scientific Reports) revealed that central and eastern parts of the equatorial Pacific acted as a CO2 source (i.e., CO2 emission) during the last deglaciation, suggesting the equatorial Pacific's contribution to atmospheric CO2 rise. However, some conflicting results have been confirmed in a marine sediment record from the western part of the equatorial Pacific (Palmer & Pearson, 2003, Science), making the conclusion elusive. In this presentation, we will show new results of Mg/Ca, oxygen isotope, and boron isotope measurements during the last 35 ka on two species of surface dwelling foraminiferas (Globigerinoides ruber and G. sacculifer) which was hand-picked separatedly from a well-dated marine sediment core recovered from the West Caroline Basin (KR05-15 PC01) (Yamazaki et al., 2008, GRL). From the new records, we will discuss how the equatorial Pacific behaved during the last deglaciation and how it related to the global carbon cycles.

Can abundance of protists be inferred from sequence data: a case study of foraminifera.

Directory of Open Access Journals (Sweden)

Alexandra A-T Weber

Full Text Available Protists are key players in microbial communities, yet our understanding of their role in ecosystem functioning is seriously impeded by difficulties in identification of protistan species and their quantification. Current microscopy-based methods used for determining the abundance of protists are tedious and often show a low taxonomic resolution. Recent development of next-generation sequencing technologies offered a very powerful tool for studying the richness of protistan communities. Still, the relationship between abundance of species and number of sequences remains subjected to various technical and biological biases. Here, we test the impact of some of these biological biases on sequence abundance of SSU rRNA gene in foraminifera. First, we quantified the rDNA copy number and rRNA expression level of three species of foraminifera by qPCR. Then, we prepared five mock communities with these species, two in equal proportions and three with one species ten times more abundant. The libraries of rDNA and cDNA of the mock communities were constructed, Sanger sequenced and the sequence abundance was calculated. The initial species proportions were compared to the raw sequence proportions as well as to the sequence abundance normalized by rDNA copy number and rRNA expression level per species. Our results showed that without normalization, all sequence data differed significantly from the initial proportions. After normalization, the congruence between the number of sequences and number of specimens was much better. We conclude that without normalization, species abundance determination based on sequence data was not possible because of the effect of biological biases. Nevertheless, by taking into account the variation of rDNA copy number and rRNA expression level we were able to infer species abundance, suggesting that our approach can be successful in controlled conditions.

Lunar periodicity in the shell flux of planktonic foraminifera in the Gulf of Mexico

Science.gov (United States)

Jonkers, Lukas; Reynolds, Caitlin E.; Richey, Julie N.; Hall, Ian R.

2015-01-01

Synchronised reproduction offers clear benefits to planktonic foraminifera – an important group of marine calcifiers – as it increases the chances of successful gamete fusion. Such synchrony requires tuning to an internal or external clock. Evidence exists for lunar reproductive cycles in some species, but its recognition in shell flux time series has proven difficult, raising questions about reproductive strategies. Using spectral analysis of a 4-year time series (mostly at weekly resolution) from the northern Gulf of Mexico, we show that the shell flux ofGloborotalia menardii, Globigerinella siphonifera, Orbulina universa, Globigerinoides sacculifer, Globigerinoides ruber (both pink and white varieties), Pulleniatina obliquiloculata, Neogloboquadrina dutertrei, Globigerinella calida and Globigerinita glutinata is characterised by lunar periodicity. However, the lunar rhythm is not present in all size fractions of each species and tends to be more dominant in the flux of larger shells, consistent with reproduction being more prevalent in larger specimens. Lunar periodicity is superimposed on longer term/seasonal changes in the shell fluxes, but accounts for a significant part of the variance in the fluxes. The amplitude of the lunar cycle increases roughly proportional with the magnitude of the flux, demonstrating that most of the population is indeed affected by lunar-phased synchronisation. In most species peak fluxes occur predominantly around, or just after, full moon. Only G. siphonifera and G. calida show a contrasting pattern with peaks concentrated around new moon. Although the exact cause of the synchronisation remains elusive, our data considerably increase the number of species for which lunar synchronised reproduction is reported and suggest that such reproductive behaviour is common in many species of planktonic foraminifera.

Distribution of foraminifera in Chincoteague Bay and the marshes of Assateague Island and the adjacent vicinity, Maryland and Virginia

Science.gov (United States)

Ellis, Alisha M.; Shaw, Jaimie; Osterman, Lisa E.; Smith, Christopher G.

2017-11-28

Scientists from the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center conducted a seasonal collection of estuarine, marsh, and sandy washover surface sediments from Chincoteague Bay, Tom’s Cove, and the surrounding Assateague Island and Delmarva Peninsula in March–April and October 2014, after Hurricane Sandy. Micropaleontology samples were collected as part of a complementary USGS Coastal and Marine Geology Program Sea-level and Storm Impacts on Estuarine Environments and Shorelines project study. For comparison with estuarine and overwash deposited foraminifera, a group of scientists from the USGS Woods Hole Coastal and Marine Science Center in Massachusetts collected samples offshore of Assateague Island on the inner continental shelf during a seafloor mapping study in the summer of 2014 and shipped select samples to the St. Petersburg Coastal and Marine Science Center. The micropaleontological subsamples analyzed for foraminifera at each site can be used to establish a foraminiferal baseline assemblage that takes into consideration the seasonal variability of the various species, regarding density and geographic extent, which are influenced by transient and stable environmental parameters. By understanding what parameters affect the various foraminiferal assemblages, researchers can delineate how alterations in salinity, temperature, or marsh-to-bay interactions, such as marsh erosion, might affect that assemblage.

Human symbionts inject and neutralize antibacterial toxins to persist in the gut.

Science.gov (United States)

Wexler, Aaron G; Bao, Yiqiao; Whitney, John C; Bobay, Louis-Marie; Xavier, Joao B; Schofield, Whitman B; Barry, Natasha A; Russell, Alistair B; Tran, Bao Q; Goo, Young Ah; Goodlett, David R; Ochman, Howard; Mougous, Joseph D; Goodman, Andrew L

2016-03-29

The human gut microbiome is a dynamic and densely populated microbial community that can provide important benefits to its host. Cooperation and competition for nutrients among its constituents only partially explain community composition and interpersonal variation. Notably, certain human-associated Bacteroidetes--one of two major phyla in the gut--also encode machinery for contact-dependent interbacterial antagonism, but its impact within gut microbial communities remains unknown. Here we report that prominent human gut symbionts persist in the gut through continuous attack on their immediate neighbors. Our analysis of just one of the hundreds of species in these communities reveals 12 candidate antibacterial effector loci that can exist in 32 combinations. Through the use of secretome studies, in vitro bacterial interaction assays and multiple mouse models, we uncover strain-specific effector/immunity repertoires that can predict interbacterial interactions in vitro and in vivo, and find that some of these strains avoid contact-dependent killing by accumulating immunity genes to effectors that they do not encode. Effector transmission rates in live animals can exceed 1 billion events per minute per gram of colonic contents, and multiphylum communities of human gut commensals can partially protect sensitive strains from these attacks. Together, these results suggest that gut microbes can determine their interactions through direct contact. An understanding of the strategies human gut symbionts have evolved to target other members of this community may provide new approaches for microbiome manipulation.

Introgressive hybridization: brown bears as vectors for polar bear alleles.

Science.gov (United States)

Hailer, Frank

2015-03-01

The dynamics and consequences of introgression can inform about numerous evolutionary processes. Biologists have therefore long been interested in hybridization. One challenge, however, lies in the identification of nonadmixed genotypes that can serve as a baseline for accurate quantification of admixture. In this issue of Molecular Ecology, Cahill et al. (2015) analyse a genomic data set of 28 polar bears, eight brown bears and one American black bear. Polar bear alleles are found to be introgressed into brown bears not only near a previously identified admixture zone on the Alaskan Admiralty, Baranof and Chichagof (ABC) Islands, but also far into the North American mainland. Elegantly contrasting admixture levels at autosomal and X chromosomal markers, Cahill and colleagues infer that male-biased dispersal has spread these introgressed alleles away from the Late Pleistocene contact zone. Compared to a previous study on the ABC Island population in which an Alaskan brown bear served as a putatively admixture-free reference, Cahill et al. (2015) utilize a newly sequenced Swedish brown bear as admixture baseline. This approach reveals that brown bears have been impacted by introgression from polar bears to a larger extent (up to 8.8% of their genome), than previously known, including the bear that had previously served as admixture baseline. No evidence for introgression of brown bear into polar bear is found, which the authors argue could be a consequence of selection. Besides adding new exciting pieces to the puzzle of polar/brown bear evolutionary history, the study by Cahill and colleagues highlights that wildlife genomics is moving from analysing single genomes towards a landscape genomics approach. © 2015 John Wiley & Sons Ltd.

Genomic diversification of giant enteric symbionts reflects host dietary lifestyles

KAUST Repository

Ngugi, David

2017-08-24

Herbivorous surgeonfishes are an ecologically successful group of reef fish that rely on marine algae as their principal food source. Here, we elucidated the significance of giant enteric symbionts colonizing these fishes regarding their roles in the digestive processes of hosts feeding predominantly on polysiphonous red algae and brown Turbinaria algae, which contain different polysaccharide constituents. Using metagenomics, single-cell genomics, and metatranscriptomic analyses, we provide evidence of metabolic diversification of enteric microbiota involved in the degradation of algal biomass in these fishes. The enteric microbiota is also phylogenetically and functionally simple relative to the complex lignocellulose-degrading microbiota of terrestrial herbivores. Over 90% of the enzymes for deconstructing algal polysaccharides emanate from members of a single bacterial lineage,

Effects of short-term environmental disturbances on living benthic foraminifera during the Pacific oyster summer mortality in the Marennes-Oléron Bay (France).

Science.gov (United States)

Bouchet, Vincent M P; Debenay, Jean-Pierre; Sauriau, Pierre-Guy; Radford-Knoery, Joël; Soletchnik, Patrick

2007-09-01

Sediment cores were collected from April to August 2004 on tidal mudflats of the macrotidal Marennes-Oléron Bay (SW France), famous for the cultivation of Pacific oysters (Crassostrea gigas). The response of living (stained) benthic foraminifera to short-term biogeochemical disturbances in the sediment and overlying water, which may be involved in oyster summer mortality, was monitored. Short-term hypoxia occurred in early June, in conjunction with a sudden rise in temperature. In mid-June, the ammonia content of sediment porewater increased, leading to potentially maximal flux towards overlying waters. Foraminiferal assemblages, particularly in the topmost layer, were altered. Ammonia tepida was the most tolerant to temperature increase and hypoxic conditions whereas Brizalina variabilis and Haynesina germanica were sensitive to organic degradation and hypoxia. Cribroelphidium gunteri was the most opportunistic during recolonisation. Benthic foraminifera showed that short-term biochemical changes in the sediment are toxic and may be involved in the summer mortality of Pacific oysters.

A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola.

Science.gov (United States)

Fidopiastis, P M; von Boletzky, S; Ruby, E G

1998-01-01

Two genera of sepiolid squids--Euprymna, found primarily in shallow, coastal waters of Hawaii and the Western Pacific, and Sepiola, the deeper-, colder-water-dwelling Mediterranean and Atlantic squids--are known to recruit luminous bacteria into light organ symbioses. The light organ symbiont of Euprymna spp. is Vibrio fischeri, but until now, the light organ symbionts of Sepiola spp. have remained inadequately identified. We used a combination of molecular and physiological characteristics to reveal that the light organs of Sepiola affinis and Sepiola robusta contain a mixed population of Vibrio logei and V. fischeri, with V. logei comprising between 63 and 100% of the bacteria in the light organs that we analyzed. V. logei had not previously been known to exist in such symbioses. In addition, this is the first report of two different species of luminous bacteria co-occurring within a single light organ. The luminescence of these symbiotic V. logei strains, as well as that of other isolates of V. logei tested, is reduced when they are grown at temperatures above 20 degrees C, partly due to a limitation in the synthesis of aliphatic aldehyde, a substrate of the luminescence reaction. In contrast, the luminescence of the V. fischeri symbionts is optimal above 24 degrees C and is not enhanced by aldehyde addition. Also, V. fischeri strains were markedly more successful than V. logei at colonizing the light organs of juvenile Euprymna scolopes, especially at 26 degrees C. These findings have important implications for our understanding of the ecological dynamics and evolution of cooperative, and perhaps pathogenic, associations of Vibrio spp. with their animal hosts.

Attempt of absolute dating and reconstitutions of climate changes in the Caribbean Sea: multi-proxy approaches to planktonic foraminifera and fine aragonitic fraction

International Nuclear Information System (INIS)

Sepulcre, S.

2008-06-01

Absolute dating of climate archives is essential to better understand climate mechanisms. A marine sediment core from the Caribbean Sea enriched in fine-grained aragonite (suitable to U/Th dating) has been studied for both planktonic foraminifera tests (≥150 μm) and fine fraction (≤63 μm) over the last one million years using mineralogical and geochemical approaches. This study aims at i) examining lead/lag of δ 18 O and radiometric ages of the different-size fractions and ii) reconstructing paleo-environment in the area. The fine fraction mineralogy is strongly influenced by glacial-interglacial sea level changes. The offset of δ 18 O and 14 C ages between the fine and foraminifera fractions during Termination I is partly explained by a bioturbation model. Attempt of U/Th dating to Termination II and V reveals that the fine fraction contains non-radiogenic Th, which needs further analytical development. Reconstructed surface water δ 18 O changes suggest a decrease in surface water salinity at the end of Mid-Pleistocene Transition related to ITCZ position over the Caribbean Sea. (author)

Delayed recolonization of foraminifera in a suddenly flooded tidal (former freshwater) marsh in Oregon (USA): Implications for relative sea-level reconstructions

Science.gov (United States)

Milker, Yvonne; Horton, Benjamin P.; Khan, Nicole S.; Nelson, Alan R.; Witter, Robert C.; Engelhart, Simon E.; Ewald, Michael; Brophy, Laura; Bridgeland, William T.

2016-04-01

Stratigraphic sequences beneath salt marshes along the U.S. Pacific Northwest coast preserve 7000 years of plate-boundary earthquakes at the Cascadia subduction zone. The sequences record rapid rises in relative sea level during regional coseismic subsidence caused by great earthquakes and gradual falls in relative sea level during interseismic uplift between earthquakes. These relative sea-level changes are commonly quantified using foraminiferal transfer functions with the assumption that foraminifera rapidly recolonize salt marshes and adjacent tidal flats following coseismic subsidence. The restoration of tidal inundation in the Ni-les'tun unit (NM unit) of the Bandon Marsh National Wildlife Refuge (Oregon), following extensive dike removal in August 2011, allowed us to directly observe changes in foraminiferal assemblages that occur during rapid "coseismic" (simulated by dike removal with sudden tidal flooding) and "interseismic" (stabilization of the marsh following flooding) relative sea-level changes analogous to those of past earthquake cycles. We analyzed surface sediment samples from 10 tidal stations at the restoration site (NM unit) from mudflat to high marsh, and 10 unflooded stations in the Bandon Marsh control site. Samples were collected shortly before and at 1- to 6-month intervals for 3 years after tidal restoration of the NM unit. Although tide gauge and grain-size data show rapid restoration of tides during approximately the first 3 months after dike removal, recolonization of the NM unit by foraminifera was delayed at least 10 months. Re-establishment of typical tidal foraminiferal assemblages, as observed at the control site, required 31 months after tidal restoration, with Miliammina fusca being the dominant pioneering species. If typical of past recolonizations, this delayed foraminiferal recolonization affects the accuracy of coseismic subsidence estimates during past earthquakes because significant postseismic uplift may shortly follow

EcoBears

DEFF Research Database (Denmark)

Nielsen, Nick; Pedersen, Sandra Bleuenn; Sørensen, Jens Ager

2015-01-01

In this paper, we introduce the EcoBears concept that aims to augment household appliances with functional and aesthetic features to promote their "use'' and "longevity of use'' to prevent their disposal. The EcoBears also aim to support the communication of environmental issues in the home setting....... We present our initial design and implementation of the EcoBears that consist of two bear modules (a mother and her cub). We also present our preliminary concept validations and lessons learned to be considered for future directions....

ENSO activity during the last climate cycle using Individual Foraminifera Analysis

Science.gov (United States)

Leduc, G.; Vidal, L.; Thirumalai, K.

2017-12-01

The El Niño / Southern Oscillation (ENSO) is the principal mode of interannual climate variability and affects key climate parameters such as low-latitude rainfall variability. Recent climate modeling experiments tend to suggest an increase in the frequency of both El Niño and La Niña events in the future, but these results remain model-dependent and require to be validated by paleodata-model comparisons. Fossil corals indicate that the ENSO variance during the 20th century is particularly high as compared to other time periods of the Holocene. Beyond the Holocene, however, little is known on past ENSO changes, which makes difficult to test paleoclimate model simulations that are used to study the ENSO sensitivity to various types of forcings. We have expanded an Individual Foraminifera Analysis (IFA) dataset using the thermocline-dwelling N. dutertrei on a marine core collected in the Panama Basin (Leduc et al., 2009), that has proven to be a skillful way to reconstruct the ENSO (Thirumalai et al., 2013). Our new IFA dataset comprehensively covers the Holocene, allowing to verify how the IFA method compares with ENSO reconstructions using corals. The dataset then extends back in time to Marine Isotope Stage 6 (MIS), with a special focus the last deglaciation and Termination II (MIS5/6) time windows, as well as key time periods to tests the sensitivity of ENSO to ice volume and orbital parameters. The new dataset confirms variable ENSO activity during the Holocene and weaker activity during LGM than during the Holocene, as a recent isotope-enabled climate model simulations of the LGM suggests (Zhu et al., 2017). Such pattern is reproduced for the Termination II. Leduc, G., L. Vidal, O. Cartapanis, and E. Bard (2009), Modes of eastern equatorial Pacific thermocline variability: Implications for ENSO dynamics over the last glacial period, Paleoceanography, 24, PA3202, doi:10.1029/2008PA001701. Thirumalai, K., J. W. Partin, C. S. Jackson, and T. M. Quinn (2013

Stable isotopes to detect food-conditioned bears and to evaluate human-bear management

Science.gov (United States)

Hopkins, John B.; Koch, Paul L.; Schwartz, Charles C.; Ferguson, Jake M.; Greenleaf, Schuyler S.; Kalinowski, Steven T.

2012-01-01

We used genetic and stable isotope analysis of hair from free-ranging black bears (Ursus americanus) in Yosemite National Park, California, USA to: 1) identify bears that consume human food, 2) estimate the diets of these bears, and 3) evaluate the Yosemite human–bear management program. Specifically, we analyzed the isotopic composition of hair from bears known a priori to be food-conditioned or non-food-conditioned and used these data to predict whether bears with an unknown management status were food-conditioned (FC) or non-food-conditioned (NFC). We used a stable isotope mixing model to estimate the proportional contribution of natural foods (plants and animals) versus human food in the diets of FC bears. We then used results from both analyses to evaluate proactive (population-level) and reactive (individual-level) human–bear management, and discussed new metrics to evaluate the overall human–bear management program in Yosemite. Our results indicated that 19 out of 145 (13%) unknown bears sampled from 2005 to 2007 were food-conditioned. The proportion of human food in the diets of known FC bears likely declined from 2001–2003 to 2005–2007, suggesting proactive management was successful in reducing the amount of human food available to bears. In contrast, reactive management was not successful in changing the management status of known FC bears to NFC bears, or in reducing the contribution of human food to the diets of FC bears. Nine known FC bears were recaptured on 14 occasions from 2001 to 2007; all bears were classified as FC during subsequent recaptures, and human–bear management did not reduce the amount of human food in the diets of FC bears. Based on our results, we suggest Yosemite continue implementing proactive human–bear management, reevaluate reactive management, and consider removing problem bears (those involved in repeated bear incidents) from the population.

Immunochemical localization of ribulose-1,5-bisphosphate carboxylase in the symbiont-containing gills of Solemya velum (Bivalvia : Mollusca)

NARCIS (Netherlands)

Cavanaugh, Colleen M.; Abbott, Marilyn S.; Veenhuis, Marten

1988-01-01

The distribution of the Calvin cycle enzyme ribulose-1,5-bisphosphate carboxylase (RbuP2Case; EC 4.1.1.39) was examined by using two immunological methods in tissues of Solemya velum, an Atlantic coast bivalve containing putative chemoautotrophic symbionts. Antibodies elicited by the purified large

State Space Formulation of Nonlinear Vibration Responses Collected from a Dynamic Rotor-Bearing System: An Extension of Bearing Diagnostics to Bearing Prognostics.

Science.gov (United States)

Tse, Peter W; Wang, Dong

2017-02-14

Bearings are widely used in various industries to support rotating shafts. Their failures accelerate failures of other adjacent components and may cause unexpected machine breakdowns. In recent years, nonlinear vibration responses collected from a dynamic rotor-bearing system have been widely analyzed for bearing diagnostics. Numerous methods have been proposed to identify different bearing faults. However, these methods are unable to predict the future health conditions of bearings. To extend bearing diagnostics to bearing prognostics, this paper reports the design of a state space formulation of nonlinear vibration responses collected from a dynamic rotor-bearing system in order to intelligently predict bearing remaining useful life (RUL). Firstly, analyses of nonlinear vibration responses were conducted to construct a bearing health indicator (BHI) so as to assess the current bearing health condition. Secondly, a state space model of the BHI was developed to mathematically track the health evolution of the BHI. Thirdly, unscented particle filtering was used to predict bearing RUL. Lastly, a new bearing acceleration life testing setup was designed to collect natural bearing degradation data, which were used to validate the effectiveness of the proposed bearing prognostic method. Results show that the prediction accuracy of the proposed bearing prognostic method is promising and the proposed bearing prognostic method is able to reflect future bearing health conditions.

State Space Formulation of Nonlinear Vibration Responses Collected from a Dynamic Rotor-Bearing System: An Extension of Bearing Diagnostics to Bearing Prognostics

Directory of Open Access Journals (Sweden)

Peter W. Tse

2017-02-01

Full Text Available Bearings are widely used in various industries to support rotating shafts. Their failures accelerate failures of other adjacent components and may cause unexpected machine breakdowns. In recent years, nonlinear vibration responses collected from a dynamic rotor-bearing system have been widely analyzed for bearing diagnostics. Numerous methods have been proposed to identify different bearing faults. However, these methods are unable to predict the future health conditions of bearings. To extend bearing diagnostics to bearing prognostics, this paper reports the design of a state space formulation of nonlinear vibration responses collected from a dynamic rotor-bearing system in order to intelligently predict bearing remaining useful life (RUL. Firstly, analyses of nonlinear vibration responses were conducted to construct a bearing health indicator (BHI so as to assess the current bearing health condition. Secondly, a state space model of the BHI was developed to mathematically track the health evolution of the BHI. Thirdly, unscented particle filtering was used to predict bearing RUL. Lastly, a new bearing acceleration life testing setup was designed to collect natural bearing degradation data, which were used to validate the effectiveness of the proposed bearing prognostic method. Results show that the prediction accuracy of the proposed bearing prognostic method is promising and the proposed bearing prognostic method is able to reflect future bearing health conditions.

Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont.

Directory of Open Access Journals (Sweden)

Steven A Frese

Full Text Available Although vertebrates harbor bacterial communities in their gastrointestinal tract whose composition is host-specific, little is known about the mechanisms by which bacterial lineages become selected. The goal of this study was to characterize the ecological processes that mediate host-specificity of the vertebrate gut symbiont Lactobacillus reuteri, and to systematically identify the bacterial factors that are involved. Experiments with monoassociated mice revealed that the ability of L. reuteri to form epithelial biofilms in the mouse forestomach is strictly dependent on the strain's host origin. To unravel the molecular basis for this host-specific biofilm formation, we applied a combination of transcriptome analysis and comparative genomics and identified eleven genes of L. reuteri 100-23 that were predicted to play a role. We then determined expression and importance of these genes during in vivo biofilm formation in monoassociated mice. This analysis revealed that six of the genes were upregulated in vivo, and that genes encoding for proteins involved in epithelial adherence, specialized protein transport, cell aggregation, environmental sensing, and cell lysis contributed to biofilm formation. Inactivation of a serine-rich surface adhesin with a devoted transport system (the SecA2-SecY2 pathway completely abrogated biofilm formation, indicating that initial adhesion represented the most significant step in biofilm formation, likely conferring host specificity. In summary, this study established that the epithelial selection of bacterial symbionts in the vertebrate gut can be both specific and highly efficient, resulting in biofilms that are exclusively formed by the coevolved strains, and it allowed insight into the bacterial effectors of this process.

Comparison of Alignment Correction Angles Between Fixed-Bearing and Mobile-Bearing UKA.

Science.gov (United States)

Inoue, Atsuo; Arai, Yuji; Nakagawa, Shuji; Inoue, Hiroaki; Yamazoe, Shoichi; Kubo, Toshikazu

2016-01-01

Good outcomes have been reported with both fixed-bearing and mobile-bearing unicompartmental knee arthroplasty (UKA). However, overcorrected alignment could induce the progression of arthritis on the non-arthroplasty side. Changes of limb alignment after UKA with both types of bearings (fixed bearing: 24 knees, mobile bearing: 28 knees) were investigated. The mean difference between the preoperative standing femoral-tibial angle (FTA) and postoperative standing FTA was significantly larger in mobile bearing UKA group. In fixed-bearing UKA, there must be some laxity in MCL tension so that a 2-mm tension gauge can be inserted. In mobile-bearing UKA, appropriate MCL tension is needed to prevent bearing dislocation. This difference in MCL tension may have caused the difference in the correction angle between the groups. Copyright © 2016 Elsevier Inc. All rights reserved.

Benthic foraminifera baseline assemblages from a coastal nearshore reef complex on the central Great Barrier Reef

Science.gov (United States)

Johnson, Jamie; Perry, Chris; Smithers, Scott; Morgan, Kyle

2016-04-01

Declining water quality due to river catchment modification since European settlement (c. 1850 A.D.) represents a major threat to the health of coral reefs on Australia's Great Barrier Reef (GBR), particularly for those located in the coastal waters of the GBR's inner-shelf. These nearshore reefs are widely perceived to be most susceptible to declining water quality owing to their close proximity to river point sources. Despite this, nearshore reefs have been relatively poorly studied with the impacts and magnitudes of environmental degradation still remaining unclear. This is largely due to ongoing debates concerning the significance of increased sediment yields against naturally high background sedimentary regimes. Benthic foraminifera are increasingly used as tools for monitoring environmental and ecological change on coral reefs. On the GBR, the majority of studies have focussed on the spatial distributions of contemporary benthic foraminiferal assemblages. While baseline assemblages from other environments (e.g. inshore reefs and mangroves) have been described, very few records exist for nearshore reefs. Here, we present preliminary results from the first palaeoecological study of foraminiferal assemblages of nearshore reefs on the central GBR. Cores were recovered from the nearshore reef complex at Paluma Shoals using percussion techniques. Recovery was 100%, capturing the entire Holocene reef sequence of the selected reef structures. Radiocarbon dating and subsequent age-depth modelling techniques were used to identify reef sequences pre-dating European settlement. Benthic foraminifera assemblages were reconstructed from the identified sequences to establish pre-European ecological baselines with the aim of providing a record of foraminiferal distribution during vertical reef accretion and against which contemporary ecological change may be assessed.

Equivalent dose determination in foraminifera: analytical description of the CO2--signal dose-response curve

International Nuclear Information System (INIS)

Hoffmann, D.; Woda, C.; Mangini, A.

2003-01-01

The dose-response of the CO 2 - signal (g=2.0006) in foraminifera with ages between 19 and 300 ka is investigated. The sum of two exponential saturation functions is an adequate function to describe the dose-response curve up to an additional dose of 8000 Gy. It yields excellent dating results but requires an artificial doses of at least 5000 Gy. For small additional doses of about 500 Gy the single exponential saturation function can be used to calculate a reliable equivalent dose D E , although it does not describ the dose-response for higher doses. The CO 2 - -signal dose-response indicates that the signal has two components of which one is less stable than the other

Mg and Ca isotope fractionation during CaCO3 biomineralisation

International Nuclear Information System (INIS)

Chang, Veronica T.-C.; Williams, R.J.P.; Makishima, Akio; Belshawl, Nick S.; O'Nions, R. Keith

2004-01-01

The natural variation of Mg and Ca stable isotopes of carbonates has been determined in carbonate skeletons of perforate foraminifera and reef coral together with Mg/Ca ratios to assess the influence of biomineralisation processes. The results for coral aragonite suggest its formation, in terms of stable isotope behaviour, approximates to inorganic precipitation from a seawater reservoir. In contrast, results for foraminifera calcite suggest a marked biological control on Mg isotope ratios presumably related to its low Mg content compared with seawater. The bearing of these observations on the use of Mg and Ca isotopes as proxies in paleoceanography is considered

Eocene and miocene rocks off the northeastern coast of the United States

Science.gov (United States)

Gibson, T.G.

1965-01-01

A grab sample from a depth of 1675 m at a point south of Cape Cod contains early Eocene planktonic Foraminifera and is correlated with the Globorotalia rex zone of Trinidad. The assemblage indicates a depth comparable to that existing today. Regional relations suggest that the Cretaceous and Eocene deposits deepen to the west toward New Jersey. Two mollusk-bearing blocks dredged from the northern side of Georges Bank are correlative with the Miocene Yorktown Formation. Rocks from two other stations are probably Miocene. Benthonic Foraminifera in one sample indicate deposition in cool temperate waters of less than 60 m depth. ?? 1965.

Determination on the chemical composition of Ammonia beccarii shell using SEM and EDX: Preliminary study of benthic foraminifera capacity in response to anthropogenic metal contamination in coastal areas

Science.gov (United States)

Rositasari, R.; Suratno; Yogaswara, D.

2018-02-01

The use of single-celled and shelled biota, such as foraminifera that lives as benthic, in coastal environmental monitoring activity is very efficient. Several species of the Ammonia have been used as a proxy of various aquatic environmental monitoring activities. Chemical constituents screening in foraminiferal shell is a step ahead to identify the capacity of benthic foraminifera in responding to anthropogenic metal contamination in coastal water areas. The initial hypothesis of this study is the calcite test of Ammonia beccarii binds the anthropogenic metal in its shell structure and triggers the deformation test. The normal and abnormal shells of Ammonia specimens from Jakarta Bay and Batam waters are used in this study. The Ponar grab was used to sample surface sediment in Jakarta Bay and Batam waters in 2015, and the short core was used to acquire substratum sediment in Jakarta Bay in 2011.The Ammonia beccarii shell was analyzed using SEM and EDX detectors (Scanning Electron Microscope and Energy Dispersive X-ray). The shooting was performed three times in each test, i.e. in the first chamber (proloculus), the last chamber and the chamber between the two. The main building blocks of the foraminifera test are oxygen with an average weight range of 42.86 - 58.79% and carbon with an average weight range of 17.69 - 26.32%. There is a tendency for low levels of C and O elements in the abnormal tests.

Response of shallow water benthic foraminifera to a ¹³C-labeled food pulse in the laboratory

Digital Repository Service at National Institute of Oceanography (India)

Linshy, V.N.; Nigam, R; Heinz, P.

foraminifera in deep-sea food webs and carbon cycling In: Rowe GT, Pariente V (eds) Deep-Sea food chains and global carbon cycle, Kluwer Academic publishers, The Netherlands, p.63-91 Giullard RR, Ryther JH (1962) Studies of marine planktonic diatoms. I... afterwards to avoid the lysis of cells and stored at −80°C until freeze-drying. The final 13C- concentration in the algae was 75 atom % 13C. 2.3 Experiment Set-up Two time series were incubated for these investigations: one for Ammonia tepida and one...

A review of bear farming and bear trade in Lao People's Democratic Republic

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E. Livingstone

2018-01-01

Full Text Available This study reviews the bear farming industry in Lao PDR with the objective of documenting the current number of commercial bear facilities (i.e. captive bear facilities judged to be trading in bear bile and/or bears and bear parts and the number of bears contained within these facilities, noting changes since it was last examined between 2000 and 2012 by Livingstone and Shepherd (2014. We surveyed all known commercial bear facilities and searched for previously unrecorded facilities. We compared our records with Livingstone and Shepherd (2014 and corrected some duplicate records from their study. In 2017, we recorded seven commercial facilities; four dedicated bear farms, and three tiger farms that were reportedly also keeping bears. We found that between 2012 and 2017 the recorded number of dedicated bear farms reduced by two, and the recorded number of tiger farms also keeping bears increased by one. Within the same period, the total number of captive bears among all facilities in Lao PDR hardly changed (+one, but the number of bears within each facility did. The northern facilities, owned by ethnic Chinese, have expanded since 2012, and central and southern facilities have downsized or closed. While bear farming appears to be downsizing in Lao PDR overall, efforts to phase it out are undermined by the expansion of foreign owned facilities in the north, within Special and Specific Economic Zones that largely cater to a Chinese market, and where the Lao government's efforts to enforce laws and protect wildlife appear to be lacking. Closing the facilities in the north will require political will and decisive law enforcement. Keywords: Bear farms, Bear bile, Gall bladder, Urso-deoxycholic acid, Bear bile extraction facilities, Lao PDR, Ursus thibetanus

Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos), and black bears (U. americanus) derived from genome sequences.

Science.gov (United States)

Cronin, Matthew A; Rincon, Gonzalo; Meredith, Robert W; MacNeil, Michael D; Islas-Trejo, Alma; Cánovas, Angela; Medrano, Juan F

2014-01-01

We assessed the relationships of polar bears (Ursus maritimus), brown bears (U. arctos), and black bears (U. americanus) with high throughput genomic sequencing data with an average coverage of 25× for each species. A total of 1.4 billion 100-bp paired-end reads were assembled using the polar bear and annotated giant panda (Ailuropoda melanoleuca) genome sequences as references. We identified 13.8 million single nucleotide polymorphisms (SNP) in the 3 species aligned to the polar bear genome. These data indicate that polar bears and brown bears share more SNP with each other than either does with black bears. Concatenation and coalescence-based analysis of consensus sequences of approximately 1 million base pairs of ultraconserved elements in the nuclear genome resulted in a phylogeny with black bears as the sister group to brown and polar bears, and all brown bears are in a separate clade from polar bears. Genotypes for 162 SNP loci of 336 bears from Alaska and Montana showed that the species are genetically differentiated and there is geographic population structure of brown and black bears but not polar bears.

Distinct effects of the nephridial symbionts Verminephrobacter and Candidatus Nephrothrix on reproduction and maturation of its earthworm host Eisenia andrei

DEFF Research Database (Denmark)

Viana, Flavia; Paz, Laura-Carlota; Methling, Karen

2018-01-01

to these two symbionts also hosts Agromyces-like bacteria in its mixed nephridial community: while growth was identical between control, Verminephrobacter-free and aposymbiotic worms, control worms produced significantly more cocoons and offspring than both Verminephrobacter-free and aposymbiotic worms...

An investigation of the composition of gases sampled by formation testers during drilling and well development

Energy Technology Data Exchange (ETDEWEB)

Kamkina, L.S.; Snezhko, M.P.

1983-01-01

The experience of studying samples taken by formation testers during the drilling and development of wells that penetrate Foraminifera, Cretaceous and Jurassic deposits at the fields of the Chechen-Ingush Autonomous Soviet Socialist Republic is correlated. The compositions of gases taken from oil bearing, water bearing and gas bearing deposits in exploratory and operating wells are compared. Recommendations are given for determining (estimating) the phase state of hydrocarbons in the cross section based on results from an investigation of the composition of gas taken during the drilling process. A corresponding interpretation method is proposed.

Teddy Bear Stories

DEFF Research Database (Denmark)

van Leeuwen, Theo; Caldas-Coulthardt, Carmen

2014-01-01

This paper presents a semiotic analysis of a key cultural artefact, the teddy bear. After introducing the iconography of the teddy bear, it analyses different kinds of stories to show how teddy bears are endowed with meaning in everyday life: stories from children's books, reminiscenses by adults...... bears have traditionally centred on interpersonal relations within the nuclear family, but have recently been institutionalized and commercialized....

“Bear-ly” learning: Limits of abstraction in black bear cognition

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Jennifer Vonk

2018-02-01

Full Text Available We presented two American black bears (Ursus americanus with a serial list learning memory task, and one of the bears with a matching-to-sample task. After extended training, both bears demonstrated some success with the memory task but failed to generalize the overarching rule of the task to novel stimuli. Matching to sample proved even more difficult for our bear to learn. We conclude that, despite previous success in training bears to respond to natural categories, quantity discriminations, and other related tasks, that bears may possess a cognitive limitation with regards to learning abstract rules. Future tests using different procedures are necessary to determine whether this is a limit of bears’ cognitive capacities, or a limitation of the current tasks as presented. Future tests should present a larger number of varying stimuli. Ideally, bears of various species should be tested on these tasks to demonstrate species as well as individual differences.

GAS BEARING

Science.gov (United States)

Skarstrom, C.W.

1960-09-01

A gas lubricated bearing for a rotating shaft is described. The assembly comprises a stationary collar having an annular member resiliently supported thereon. The collar and annular member are provided with cooperating gas passages arranged for admission of pressurized gas which supports and lubricates a bearing block fixed to the rotatable shaft. The resilient means for the annular member support the latter against movement away from the bearing block when the assembly is in operation.

Towards a molecular understanding of symbiont function: Identification of a fungal gene for the degradation of xylan in the fungus gardens of leaf-cutting ants

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Lange Lene

2008-02-01

Full Text Available Abstract Background Leaf-cutting ants live in symbiosis with a fungus that they rear for food by providing it with live plant material. Until recently the fungus' main inferred function was to make otherwise inaccessible cell wall degradation products available to the ants, but new studies have shed doubt on this idea. To provide evidence for the cell wall degrading capacity of the attine ant symbiont, we designed PCR primers from conserved regions of known xylanase genes, to be used in PCR with genomic DNA from the symbiont as template. We also measured xylanase, cellulase and proteinase activities in the fungus gardens in order to investigate the dynamics of degradation activities. Results We cloned a xylanase gene from the mutualistic fungus of Acromyrmex echinatior, determined its protein sequence, and inserted it in a yeast expression vector to confirm its substrate specificity. Our results show that the fungus has a functional xylanase gene. We also show by lab experiments in vivo that the activity of fungal xylanase and cellulase is not evenly distributed, but concentrated in the lower layer of fungus gardens, with only modest activity in the middle layer where gongylidia are produced and intermediate activity in the newly established top layer. This vertical distribution appears to be negatively correlated with the concentration of glucose, which indicates a directly regulating role of glucose, as has been found in other fungi and has been previously suggested for the ant fungal symbiont. Conclusion The mutualistic fungus of Acromyrmex echinatior has a functional xylanase gene and is thus presumably able to at least partially degrade the cell walls of leaves. This finding supports a saprotrophic origin of the fungal symbiont. The observed distribution of enzyme activity leads us to propose that leaf-substrate degradation in fungus gardens is a multi-step process comparable to normal biodegradation of organic matter in soil ecosystems

Comparative Genomics of the Dual-Obligate Symbionts from the Treehopper, Entylia carinata (Hemiptera: Membracidae), Provide Insight into the Origins and Evolution of an Ancient Symbiosis.

Science.gov (United States)

Mao, Meng; Yang, Xiushuai; Poff, Kirsten; Bennett, Gordon

2017-06-01

Insect species in the Auchenorrhyncha suborder (Hemiptera) maintain ancient obligate symbioses with bacteria that provide essential amino acids (EAAs) deficient in their plant-sap diets. Molecular studies have revealed that two complementary symbiont lineages, "Candidatus Sulcia muelleri" and a betaproteobacterium ("Ca. Zinderia insecticola" in spittlebugs [Cercopoidea] and "Ca. Nasuia deltocephalinicola" in leafhoppers [Cicadellidae]) may have persisted in the suborder since its origin ∼300 Ma. However, investigation of how this pair has co-evolved on a genomic level is limited to only a few host lineages. We sequenced the complete genomes of Sulcia and a betaproteobacterium from the treehopper, Entylia carinata (Membracidae: ENCA), as the first representative from this species-rich group. It also offers the opportunity to compare symbiont evolution across a major insect group, the Membracoidea (leafhoppers + treehoppers). Genomic analyses show that the betaproteobacteria in ENCA is a member of the Nasuia lineage. Both symbionts have larger genomes (Sulcia = 218 kb and Nasuia = 144 kb) than related lineages in Deltocephalinae leafhoppers, retaining genes involved in basic cellular functions and information processing. Nasuia-ENCA further exhibits few unique gene losses, suggesting that its parent lineage in the common ancestor to the Membracoidea was already highly reduced. Sulcia-ENCA has lost the abilities to synthesize menaquinone cofactor and to complete the synthesis of the branched-chain EAAs. Both capabilities are conserved in other Sulcia lineages sequenced from across the Auchenorrhyncha. Finally, metagenomic sequencing recovered the partial genome of an Arsenophonus symbiont, although it infects only 20% of individuals indicating a facultative role. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

A decline in benthic foraminifera following the deepwater horizon event in the northeastern Gulf of Mexico.

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Schwing, Patrick T; Romero, Isabel C; Brooks, Gregg R; Hastings, David W; Larson, Rebekka A; Hollander, David J

2015-01-01

Sediment cores were collected from three sites (1000-1200 m water depth) in the northeastern Gulf of Mexico from December 2010 to June 2011 to assess changes in benthic foraminiferal density related to the Deepwater Horizon (DWH) event (April-July 2010, 1500 m water depth). Short-lived radioisotope geochronologies (²¹⁰Pb, ²³⁴Th), organic geochemical assessments, and redox metal concentrations were determined to relate changes in sediment accumulation rate, contamination, and redox conditions with benthic foraminiferal density. Cores collected in December 2010 indicated a decline in density (80-93%). This decline was characterized by a decrease in benthic foraminiferal density and benthic foraminiferal accumulation rate (BFAR) in the surface 10 mm relative to the down-core mean in all benthic foraminifera, including the dominant genera (Bulimina spp., Uvigerina spp., and Cibicidoides spp.). Cores collected in February 2011 documented a site-specific response. There was evidence of a recovery in the benthic foraminiferal density and BFAR at the site closest to the wellhead (45 NM, NE). However, the site farther afield (60 NM, NE) recorded a continued decline in benthic foraminiferal density and BFAR down to near-zero values. This decline in benthic foraminiferal density occurred simultaneously with abrupt increases in sedimentary accumulation rates, polycyclic aromatic hydrocarbon (PAH) concentrations, and changes in redox conditions. Persistent reducing conditions (as many as 10 months after the event) in the surface of these core records were a possible cause of the decline. Another possible cause was the increase (2-3 times background) in PAH's, which are known to cause benthic foraminifera mortality and inhibit reproduction. Records of benthic foraminiferal density coupled with short-lived radionuclide geochronology and organic geochemistry were effective in quantifying the benthic response and will continue to be a valuable tool in determining the long

Stringent Expression Control of Pathogenic R-body Production in Legume Symbiont Azorhizobium caulinodans

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Jun-ichi Matsuoka

2017-07-01

Full Text Available R bodies are insoluble large polymers consisting of small proteins encoded by reb genes and are coiled into cylindrical structures in bacterial cells. They were first discovered in Caedibacter species, which are obligate endosymbionts of paramecia. Caedibacter confers a killer trait on the host paramecia. R-body-producing symbionts are released from their host paramecia and kill symbiont-free paramecia after ingestion. The roles of R bodies have not been explained in bacteria other than Caedibacter. Azorhizobium caulinodans ORS571, a microsymbiont of the legume Sesbania rostrata, carries a reb operon containing four reb genes that are regulated by the repressor PraR. Herein, deletion of the praR gene resulted in R-body formation and death of host plant cells. The rebR gene in the reb operon encodes an activator. Three PraR binding sites and a RebR binding site are present in the promoter region of the reb operon. Expression analyses using strains with mutations within the PraR binding site and/or the RebR binding site revealed that PraR and RebR directly control the expression of the reb operon and that PraR dominantly represses reb expression. Furthermore, we found that the reb operon is highly expressed at low temperatures and that 2-oxoglutarate induces the expression of the reb operon by inhibiting PraR binding to the reb promoter. We conclude that R bodies are toxic not only in paramecium symbiosis but also in relationships between other bacteria and eukaryotic cells and that R-body formation is controlled by environmental factors.

Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont

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Liaimer, Anton; Pederson, Eric; Kim, Sea-Yong; Shapiro, Nicole; Woyke, Tanja; Altermark, Bjørn; Pawlowski, Katharina; Weyman, Philip D; Dupont, Christopher L

2018-01-01

Abstract Cyanobacteria belonging to the genus Nostoc comprise free-living strains and also facultative plant symbionts. Symbiotic strains can enter into symbiosis with taxonomically diverse range of host plants. Little is known about genomic changes associated with evolutionary transition of Nostoc from free-living to plant symbiont. Here, we compared the genomes derived from 11 symbiotic Nostoc strains isolated from different host plants and infer phylogenetic relationships between strains. Phylogenetic reconstructions of 89 Nostocales showed that symbiotic Nostoc strains with a broad host range, entering epiphytic and intracellular or extracellular endophytic interactions, form a monophyletic clade indicating a common evolutionary history. A polyphyletic origin was found for Nostoc strains which enter only extracellular symbioses, and inference of transfer events implied that this trait was likely acquired several times in the evolution of the Nostocales. Symbiotic Nostoc strains showed enriched functions in transport and metabolism of organic sulfur, chemotaxis and motility, as well as the uptake of phosphate, branched-chain amino acids, and ammonium. The genomes of the intracellular clade differ from that of other Nostoc strains, with a gain/enrichment of genes encoding proteins to generate l-methionine from sulfite and pathways for the degradation of the plant metabolites vanillin and vanillate, and of the macromolecule xylan present in plant cell walls. These compounds could function as C-sources for members of the intracellular clade. Molecular clock analysis indicated that the intracellular clade emerged ca. 600 Ma, suggesting that intracellular Nostoc symbioses predate the origin of land plants and the emergence of their extant hosts. PMID:29554291

Asaia symbionts interfere with infection by Flavescence dorée phytoplasma in leafhoppers

KAUST Repository

Gonella, Elena; Crotti, Elena; Mandrioli, Mauro; Daffonchio, Daniele; Alma, Alberto

2018-01-01

The transmission of microbial pathogens by insect vectors can be affected by the insect’s microbial symbionts, which may compete in colonizing organs, express antagonistic factors or activate host immune response. Acetic acid bacteria of the genus Asaia are symbionts of the leafhopper Scaphoideus titanus, which transmits Flavescence dorée phytoplasma. These bacteria could be used as control agents against the disease. Here, we experimentally investigated the interaction between different strains of Asaia and phytoplasma transmission in the laboratory by using the model leafhopper Euscelidius variegatus and the plant host Vicia faba. We found that uncultivable and low concentrations of Asaia phylotypes were associated with E. variegatus. When we supplied different Asaia strains isolated from other insects and exhibiting different phenotypes to E. variegatus orally, the bacteria stably colonized the leafhopper, reached relatively higher densities and could then be isolated from the host. We conducted transmission trials of Flavescence dorée phytoplasma with individuals colonized with three exogenous Asaia strains. When the phytoplasma became established in the bodies of E. variegatus, leafhoppers were able to transmit it to broad beans, with transmission rates ranging from 33 to 76% in different experiments. However, leafhoppers that were colonized by one of the Asaia strains producing an air–liquid interface biofilm exhibited significantly reduced phytoplasma acquisition, with infection rates at 5–28%, whereas they were 25–77% in control insects. Although the mechanisms regulating this interference remain to be elucidated, our results provide evidence of the potential use of Asaia as a biocontrol agent.

Asaia symbionts interfere with infection by Flavescence dorée phytoplasma in leafhoppers

KAUST Repository

Gonella, Elena

2018-03-20

The transmission of microbial pathogens by insect vectors can be affected by the insect’s microbial symbionts, which may compete in colonizing organs, express antagonistic factors or activate host immune response. Acetic acid bacteria of the genus Asaia are symbionts of the leafhopper Scaphoideus titanus, which transmits Flavescence dorée phytoplasma. These bacteria could be used as control agents against the disease. Here, we experimentally investigated the interaction between different strains of Asaia and phytoplasma transmission in the laboratory by using the model leafhopper Euscelidius variegatus and the plant host Vicia faba. We found that uncultivable and low concentrations of Asaia phylotypes were associated with E. variegatus. When we supplied different Asaia strains isolated from other insects and exhibiting different phenotypes to E. variegatus orally, the bacteria stably colonized the leafhopper, reached relatively higher densities and could then be isolated from the host. We conducted transmission trials of Flavescence dorée phytoplasma with individuals colonized with three exogenous Asaia strains. When the phytoplasma became established in the bodies of E. variegatus, leafhoppers were able to transmit it to broad beans, with transmission rates ranging from 33 to 76% in different experiments. However, leafhoppers that were colonized by one of the Asaia strains producing an air–liquid interface biofilm exhibited significantly reduced phytoplasma acquisition, with infection rates at 5–28%, whereas they were 25–77% in control insects. Although the mechanisms regulating this interference remain to be elucidated, our results provide evidence of the potential use of Asaia as a biocontrol agent.

Low levels of mitochondrial DNA and symbiont diversity in the worldwide agricultural pest, the greenhouse whitefly Trialeurodes vaporariorum (Hemiptera: Aleyrodidae).

Science.gov (United States)

Kapantaidaki, Despoina E; Ovčarenko, Irina; Fytrou, Natasa; Knott, K Emily; Bourtzis, Kostas; Tsagkarakou, Anastasia

2015-01-01

Trialeurodes vaporariorum, the greenhouse whitefly, is a cosmopolitan agricultural pest. Little is known about the genetic diversity of T. vaporariorum and the bacterial symbionts associated with this species. Here, we undertook a large phylogeographic study by investigating both the mitochondrial (mt) diversity and the infection status of 38 T. vaporariorum collections from 18 countries around the world. Genetic diversity of T. vaporariorum was studied by analyzing sequence data from the mt cytochrome oxidase I, cytochrome b, and NADH dehydrogenase subunit 5 genes. Maximum-likelihood (ML) phylogeny reconstruction delineated 2 clades characterized by limited sequence divergence: one clade comprised samples only from the Northern hemisphere whereas the other comprised samples from a broader geographical range. The presence of secondary symbionts was determined by PCR using primers specific for Hamiltonella, Rickettsia, Arsenophonus, Cardinium, Wolbachia, and Fritschea. Most individuals examined harbored at least one secondary endosymbiont, and Arsenophonus was detected in almost all male and female individuals. Wolbachia was present at a much lower frequency, and Cardinium was detected in only a few individuals from Greece. Rickettsia, Hamiltonella, and Fritschea were not found. Additionally, we set out to further analyze Arsenophonus diversity by multilocus sequence typing analysis; however, the Arsenophonus sequences did not exhibit any polymorphism. Our results revealed remarkably low diversity in both mtDNA and symbionts in this worldwide agricultural pest, contrasting sharply with that of the ecologically similar Bemisia tabaci. © The American Genetic Association 2014. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Use of the Boron partition coefficient ‘K_D’ and B/Ca from planktonic foraminifera in the estimation of past seawater pCO₂

Digital Repository Service at National Institute of Oceanography (India)

Naik, S.S.; Naidu, P.D.

We assess the usefulness of the empirical boron partition coefficient, K_D and B/Ca measured from planktonic foraminifera in estimation of pCO₂ using three different relationships between K_D and temperature derived...

Genomic evidence of geographically widespread effect of gene flow from polar bears into brown bears.

Science.gov (United States)

Cahill, James A; Stirling, Ian; Kistler, Logan; Salamzade, Rauf; Ersmark, Erik; Fulton, Tara L; Stiller, Mathias; Green, Richard E; Shapiro, Beth

2015-03-01

Polar bears are an arctic, marine adapted species that is closely related to brown bears. Genome analyses have shown that polar bears are distinct and genetically homogeneous in comparison to brown bears. However, these analyses have also revealed a remarkable episode of polar bear gene flow into the population of brown bears that colonized the Admiralty, Baranof and Chichagof islands (ABC islands) of Alaska. Here, we present an analysis of data from a large panel of polar bear and brown bear genomes that includes brown bears from the ABC islands, the Alaskan mainland and Europe. Our results provide clear evidence that gene flow between the two species had a geographically wide impact, with polar bear DNA found within the genomes of brown bears living both on the ABC islands and in the Alaskan mainland. Intriguingly, while brown bear genomes contain up to 8.8% polar bear ancestry, polar bear genomes appear to be devoid of brown bear ancestry, suggesting the presence of a barrier to gene flow in that direction. © 2014 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

The Plasmid Mobilome of the Model Plant-Symbiont Sinorhizobium meliloti: Coming up with New Questions and Answers.

Science.gov (United States)

Lagares, Antonio; Sanjuán, Juan; Pistorio, Mariano

2014-10-01

Rhizobia are Gram-negative Alpha- and Betaproteobacteria living in the underground which have the ability to associate with legumes for the establishment of nitrogen-fixing symbioses. Sinorhizobium meliloti in particular-the symbiont of Medicago, Melilotus, and Trigonella spp.-has for the past decades served as a model organism for investigating, at the molecular level, the biology, biochemistry, and genetics of a free-living and symbiotic soil bacterium of agricultural relevance. To date, the genomes of seven different S. meliloti strains have been fully sequenced and annotated, and several other draft genomic sequences are also available. The vast amount of plasmid DNA that S. meliloti frequently bears (up to 45% of its total genome), the conjugative ability of some of those plasmids, and the extent of the plasmid diversity has provided researchers with an extraordinary system to investigate functional and structural plasmid molecular biology within the evolutionary context surrounding a plant-associated model bacterium. Current evidence indicates that the plasmid mobilome in S. meliloti is composed of replicons varying greatly in size and having diverse conjugative systems and properties along with different evolutionary stabilities and biological roles. While plasmids carrying symbiotic functions (pSyms) are known to have high structural stability (approaching that of chromosomes), the remaining plasmid mobilome (referred to as the non-pSym, functionally cryptic, or accessory compartment) has been shown to possess remarkable diversity and to be highly active in conjugation. In light of the modern genomic and current biochemical data on the plasmids of S. meliloti, the current article revises their main structural components, their transfer and regulatory mechanisms, and their potential as vehicles in shaping the evolution of the rhizobial genome.

Taxonomy and distribution of benthic foraminifera from the sediments of Palk Strait, Tamil Nadu, east coast of India

Digital Repository Service at National Institute of Oceanography (India)

Gandhi, S.; Rajamanickam, G.V.; Nigam, R.

.la-b. - Bhalla and Nigam, 1979, p.239. pl. 1.- Nigam and Theide. 1983, pp. 148-149, pl.13, figs.l0a-b. - Mayankar, 1994, p.138, pl.15. - Rao, 1998. p.192. pl.47. figs 5-6. Hypotype : Length - 0.40 mm Breadth - 0.24 mm Remarks : The same species has also been... of western India. Contr. Cush. Found. Forain. Re\\. 7 : 15-24. Bhalia, S.B. and Bhalla, S.N. 1959. Recent foraminifera from the beach sands at Puri, Orissa. Jour. Pal. Soc. India, 4:78-81. Boltovskoy, E. 1954. Foraminiferos de la Bahia San Blas. Rivista del...

EFFECT OF CLEARANCE THE BALL BEARINGS ON INCORRECT WORK OF THREE-SUPORT BEARING SHAFT

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Jarosław KACZOR

2014-06-01

Full Text Available Durability deep groove ball bearings depends on factors (called attributes design, technological and operational. Among the design features one of the most important is play in the bearings. Polish Norm shows five groups of looseness in the bearings, in which the play range from 0 to 105 microns. Manufacturers of rolling bearings they only play group, which has a bearing data, without giving the exact value of the slack. Aim of this study is to determine how it affects the play in the bearings to work three-bearing shafts, including elasticity and resilience three-bearing shafts.

PhaR, a Negative Regulator of PhaP, Modulates the Colonization of a Burkholderia Gut Symbiont in the Midgut of the Host Insect, Riptortus pedestris.

Science.gov (United States)

Jang, Seong Han; Jang, Ho Am; Lee, Junbeom; Kim, Jong Uk; Lee, Seung Ah; Park, Kyoung-Eun; Kim, Byung Hyun; Jo, Yong Hun; Lee, Bok Luel

2017-06-01

Five genes encoding PhaP family proteins and one phaR gene have been identified in the genome of Burkholderia symbiont strain RPE75. PhaP proteins function as the surface proteins of polyhydroxyalkanoate (PHA) granules, and the PhaR protein acts as a negative regulator of PhaP biosynthesis. Recently, we characterized one phaP gene to understand the molecular cross talk between Riptortus insects and Burkholderia gut symbionts. In this study, we constructed four other phaP gene-depleted mutants (Δ phaP1 , Δ phaP2 , Δ phaP3 , and Δ phaP4 mutants), one phaR gene-depleted mutant, and a phaR -complemented mutant (Δ phaR/phaR mutant). To address the biological roles of four phaP family genes and the phaR gene during insect-gut symbiont interaction, these Burkholderia mutants were fed to the second-instar nymphs, and colonization ability and fitness parameters were examined. In vitro , the Δ phaP3 and Δ phaR mutants cannot make a PHA granule normally in a stressful environment. Furthermore, the Δ phaR mutation decreased the colonization ability in the host midgut and negatively affected the host insect's fitness compared with wild-type Burkholderia -infected insects. However, other phaP family gene-depleted mutants colonized well in the midgut of the fifth-instar nymph insects. However, in the case of females, the colonization rate of the Δ phaP3 mutant was decreased and the host's fitness parameters were decreased compared with the wild-type-infected host, suggesting that the environment of the female midgut may be more hostile than that of the male midgut. These results demonstrate that PhaR plays an important role in the biosynthesis of PHA granules and that it is significantly related to the colonization of the Burkholderia gut symbiont in the host insects' midgut. IMPORTANCE Bacterial polyhydroxyalkanoate (PHA) biosynthesis is a complex process requiring several enzymes. The biological roles of PHA granule synthesis enzymes and the surface proteins of PHA

Early Miocene benthic foraminifera and biostratigraphy of the Qom Formation, Deh Namak, Central Iran

Science.gov (United States)

Daneshian, Jahanbakhsh; Dana, Leila Ramezani

2007-03-01

A total of 165 samples were collected from the Qom Formation investigated in a stratigraphic section north of Deh Namak, in Central Iran. From these, 35 genera and 47 species of benthic foraminifera were identified. The age of the studied section is Early Miocene (Aquitanian to Early Burdigalian) based on the occurrence of Borelis melo curdica, Meandropsina anahensis, Meandropsina iranica, Elphidium sp. 14, Peneroplis farsensis, and Triloculina tricarinata. The thickness of the Qom Formation is 401 m of which 161.2 m is early Burdigalian in age. Foraminiferal assemblages in the Deh Namak section are referable to the Borelis melo group- Meandropsina iranica Assemblage Zone and Miogypsinoides- Archaias-Valvulinid Assemblage Zone of [Adams, T.D., Bourgeois, F., 1967. Asmari biostratigraphy. Iranian Oil Operating Companies, Geological and Exploration Division, Report1074 (unpublished) 1-37.] described originally from the Asmari Formation.

Geology and geomorphology of Bear Lake Valley and upper Bear River, Utah and Idaho

Science.gov (United States)

Reheis, M.C.; Laabs, B.J.C.; Kaufman, D.S.

2009-01-01

Bear Lake, on the Idaho-Utah border, lies in a fault-bounded valley through which the Bear River flows en route to the Great Salt Lake. Surficial deposits in the Bear Lake drainage basin provide a geologic context for interpretation of cores from Bear Lake deposits. In addition to groundwater discharge, Bear Lake received water and sediment from its own small drainage basin and sometimes from the Bear River and its glaciated headwaters. The lake basin interacts with the river in complex ways that are modulated by climatically induced lake-level changes, by the distribution of active Quaternary faults, and by the migration of the river across its fluvial fan north of the present lake. The upper Bear River flows northward for ???150 km from its headwaters in the northwestern Uinta Mountains, generally following the strike of regional Laramide and late Cenozoic structures. These structures likely also control the flow paths of groundwater that feeds Bear Lake, and groundwater-fed streams are the largest source of water when the lake is isolated from the Bear River. The present configuration of the Bear River with respect to Bear Lake Valley may not have been established until the late Pliocene. The absence of Uinta Range-derived quartzites in fluvial gravel on the crest of the Bear Lake Plateau east of Bear Lake suggests that the present headwaters were not part of the drainage basin in the late Tertiary. Newly mapped glacial deposits in the Bear River Range west of Bear Lake indicate several advances of valley glaciers that were probably coeval with glaciations in the Uinta Mountains. Much of the meltwater from these glaciers may have reached Bear Lake via groundwater pathways through infiltration in the karst terrain of the Bear River Range. At times during the Pleistocene, the Bear River flowed into Bear Lake and water level rose to the valley threshold at Nounan narrows. This threshold has been modified by aggradation, downcutting, and tectonics. Maximum lake

Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated from Frankliniella occidentalis.

Science.gov (United States)

Facey, Paul D; Méric, Guillaume; Hitchings, Matthew D; Pachebat, Justin A; Hegarty, Matt J; Chen, Xiaorui; Morgan, Laura V A; Hoeppner, James E; Whitten, Miranda M A; Kirk, William D J; Dyson, Paul J; Sheppard, Sam K; Del Sol, Ricardo

2015-07-15

Obligate bacterial symbionts are widespread in many invertebrates, where they are often confined to specialized host cells and are transmitted directly from mother to progeny. Increasing numbers of these bacteria are being characterized but questions remain about their population structure and evolution. Here we take a comparative genomics approach to investigate two prominent bacterial symbionts (BFo1 and BFo2) isolated from geographically separated populations of western flower thrips, Frankliniella occidentalis. Our multifaceted approach to classifying these symbionts includes concatenated multilocus sequence analysis (MLSA) phylogenies, ribosomal multilocus sequence typing (rMLST), construction of whole-genome phylogenies, and in-depth genomic comparisons. We showed that the BFo1 genome clusters more closely to species in the genus Erwinia, and is a putative close relative to Erwinia aphidicola. BFo1 is also likely to have shared a common ancestor with Erwinia pyrifoliae/Erwinia amylovora and the nonpathogenic Erwinia tasmaniensis and genetic traits similar to Erwinia billingiae. The BFo1 genome contained virulence factors found in the genus Erwinia but represented a divergent lineage. In contrast, we showed that BFo2 belongs within the Enterobacteriales but does not group closely with any currently known bacterial species. Concatenated MLSA phylogenies indicate that it may have shared a common ancestor to the Erwinia and Pantoea genera, and based on the clustering of rMLST genes, it was most closely related to Pantoea ananatis but represented a divergent lineage. We reconstructed a core genome of a putative common ancestor of Erwinia and Pantoea and compared this with the genomes of BFo bacteria. BFo2 possessed none of the virulence determinants that were omnipresent in the Erwinia and Pantoea genera. Taken together, these data are consistent with BFo2 representing a highly novel species that maybe related to known Pantoea. © The Author(s) 2015. Published by

Genome sequence of Bradyrhizobium sp. LMTR 3, a diazotrophic symbiont of Lima bean (Phaseolus lunatus

Directory of Open Access Journals (Sweden)

Ernesto Ormeño-Orrillo

2017-09-01

Full Text Available Bradyrhizobium sp. LMTR 3 is a representative strain of one of the geno(species of diazotrophic symbionts associated with Lima bean (Phaseolus lunatus in Peru. Its 7.83 Mb genome was sequenced using the Illumina technology and found to encode a complete set of genes required for nodulation and nitrogen fixation, and additional genes putatively involved in root colonization. Its draft genome sequence and annotation have been deposited at GenBank under the accession number MAXC00000000.

Bacterial Symbionts in Lepidoptera: Their Diversity, Transmission, and Impact on the Host

Directory of Open Access Journals (Sweden)

Luis R. Paniagua Voirol

2018-03-01

Full Text Available The insect’s microbiota is well acknowledged as a “hidden” player influencing essential insect traits. The gut microbiome of butterflies and moths (Lepidoptera has been shown to be highly variable between and within species, resulting in a controversy on the functional relevance of gut microbes in this insect order. Here, we aim to (i review current knowledge on the composition of gut microbial communities across Lepidoptera and (ii elucidate the drivers of the variability in the lepidopteran gut microbiome and provide an overview on (iii routes of transfer and (iv the putative functions of microbes in Lepidoptera. To find out whether Lepidopterans possess a core gut microbiome, we compared studies of the microbiome from 30 lepidopteran species. Gut bacteria of the Enterobacteriaceae, Bacillaceae, and Pseudomonadaceae families were the most widespread across species, with Pseudomonas, Bacillus, Staphylococcus, Enterobacter, and Enterococcus being the most common genera. Several studies indicate that habitat, food plant, and age of the host insect can greatly impact the gut microbiome, which contributes to digestion, detoxification, or defense against natural enemies. We mainly focus on the gut microbiome, but we also include some examples of intracellular endosymbionts. These symbionts are present across a broad range of insect taxa and are known to exert different effects on their host, mostly including nutrition and reproductive manipulation. Only two intracellular bacteria genera (Wolbachia and Spiroplasma have been reported to colonize reproductive tissues of Lepidoptera, affecting their host’s reproduction. We explore routes of transmission of both gut microbiota and intracellular symbionts and have found that these microbes may be horizontally transmitted through the host plant, but also vertically via the egg stage. More detailed knowledge about the functions and plasticity of the microbiome in Lepidoptera may provide novel leads

Exploring the potential for actinobacteria as defensive symbionts in fungus-growing termites.

Science.gov (United States)

Visser, Anna A; Nobre, Tânia; Currie, Cameron R; Aanen, Duur K; Poulsen, Michael

2012-05-01

In fungus-growing termites, fungi of the subgenus Pseudoxylaria threaten colony health through substrate competition with the termite fungus (Termitomyces). The potential mechanisms with which termites suppress Pseudoxylaria have remained unknown. Here we explore if Actinobacteria potentially play a role as defensive symbionts against Pseudoxylaria in fungus-growing termites. We sampled for Actinobacteria from 30 fungus-growing termite colonies, spanning the three main termite genera and two geographically distant sites. Our isolations yielded 360 Actinobacteria, from which we selected subsets for morphological (288 isolates, grouped in 44 morphotypes) and for 16S rRNA (35 isolates, spanning the majority of morphotypes) characterisation. Actinobacteria were found throughout all sampled nests and colony parts and, phylogenetically, they are interspersed with Actinobacteria from origins other than fungus-growing termites, indicating lack of specificity. Antibiotic-activity screening of 288 isolates against the fungal cultivar and competitor revealed that most of the Actinobacteria-produced molecules with antifungal activity. A more detailed bioassay on 53 isolates, to test the specificity of antibiotics, showed that many Actinobacteria inhibit both Pseudoxylaria and Termitomyces, and that the cultivar fungus generally is more susceptible to inhibition than the competitor. This suggests that either defensive symbionts are not present in the system or that they, if present, represent a subset of the community isolated. If so, the antibiotics must be used in a targeted fashion, being applied to specific areas by the termites. We describe the first discovery of an assembly of antibiotic-producing Actinobacteria occurring in fungus-growing termite nests. However, due to the diversity found, and the lack of both phylogenetic and bioactivity specificity, further work is necessary for a better understanding of the putative role of antibiotic-producing bacteria in the fungus

Global latitudinal species diversity gradient in deep-sea benthic foraminifera

Science.gov (United States)

Culver, Stephen J.; Buzas, Martin A.

2000-02-01

Global scale patterns of species diversity for modern deep-sea benthic foraminifera, an important component of the bathyal and abyssal meiofauna, are examined using comparable data from five studies in the Atlantic, ranging over 138° of latitude from the Norwegian Sea to the Weddell Sea. We show that a pattern of decreasing diversity with increasing latitude characterises both the North and South Atlantic. This pattern is confirmed for the northern hemisphere by independent data from the west-central North Atlantic and the Arctic basin. Species diversity in the North Atlantic northwards from the equator is variable until a sharp fall in the Norwegian Sea (ca. 65°N). In the South Atlantic species diversity drops from a maximum in latitudes less than 30°S and then decreases slightly from 40 to 70°S. For any given latitude, North Atlantic diversity is generally lower than in the South Atlantic. Both ecological and historical factors related to food supply are invoked to explain the formation and maintenance of the latitudinal gradient of deep-sea benthic foraminiferal species diversity. The gradient formed some 36 million years ago when global climatic cooling led to seasonally fluctuating food supply in higher latitudes.

State Space Formulation of Nonlinear Vibration Responses Collected from a Dynamic Rotor-Bearing System: An Extension of Bearing Diagnostics to Bearing Prognostics

OpenAIRE

Peter W. Tse; Dong Wang

2017-01-01

Bearings are widely used in various industries to support rotating shafts. Their failures accelerate failures of other adjacent components and may cause unexpected machine breakdowns. In recent years, nonlinear vibration responses collected from a dynamic rotor-bearing system have been widely analyzed for bearing diagnostics. Numerous methods have been proposed to identify different bearing faults. However, these methods are unable to predict the future health conditions of bearings. To exten...

Evaluation of bearing configurations using the single bearing tester in liquid nitrogen

Science.gov (United States)

Jett, T.; Hall, P.; Thom, R.

1991-01-01

Various bearing configurations were tested using the Marshall Space Flight Center single bearing tester with LN2 as the cryogenic coolant. The baseline was one Rocketdyne phase one high pressure oxidizer turbopump (HPOTP) pump end 45-mm bore bearing. The bearing configurations that were tested included a Salox/M cage configuration, a silicon nitride ball configuration, an elongated cage configuration, and a Bray 601 grease configuration.

Improvement of journal bearing operation at heavy misalignment using bearing flexibility and compliant liners

DEFF Research Database (Denmark)

Thomsen, Kim; Klit, Peder

2012-01-01

A flexure journal bearing design is proposed that will improve operational behaviour of a journal bearing at pronounced misalignment. Using a thermoelastohydrodynamic model, it is shown that the proposed flexure journal bearing has vastly increased the hydrodynamic performance compared to the stiff...... bearing when misaligned. The hydrodynamic performance is evaluated on lubricant film thickness, pressure and temperature. Furthermore, the influence of a compliant bearing liner is investigated and it is found that it increases the hydrodynamic performance when applied to a stiff bearing, whereas...... the liner has practically no influence on the flexure journal bearing's performance....

Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals.

KAUST Repository

Baumgarten, Sebastian

2013-10-12

Animal and plant genomes produce numerous small RNAs (smRNAs) that regulate gene expression post-transcriptionally affecting metabolism, development, and epigenetic inheritance. In order to characterize the repertoire of endogenous smRNAs and potential gene targets in dinoflagellates, we conducted smRNA and mRNA expression profiling over 9 experimental treatments of cultures from Symbiodinium microadriaticum, a photosynthetic symbiont of scleractinian corals.

Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals.

KAUST Repository

Baumgarten, Sebastian; Bayer, Till; Aranda, Manuel; Liew, Yi Jin; Carr, Adrian; Micklem, Gos; Voolstra, Christian R.

2013-01-01

Animal and plant genomes produce numerous small RNAs (smRNAs) that regulate gene expression post-transcriptionally affecting metabolism, development, and epigenetic inheritance. In order to characterize the repertoire of endogenous smRNAs and potential gene targets in dinoflagellates, we conducted smRNA and mRNA expression profiling over 9 experimental treatments of cultures from Symbiodinium microadriaticum, a photosynthetic symbiont of scleractinian corals.

Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage.

Science.gov (United States)

Hailer, Frank; Kutschera, Verena E; Hallström, Björn M; Klassert, Denise; Fain, Steven R; Leonard, Jennifer A; Arnason, Ulfur; Janke, Axel

2012-04-20

Recent studies have shown that the polar bear matriline (mitochondrial DNA) evolved from a brown bear lineage since the late Pleistocene, potentially indicating rapid speciation and adaption to arctic conditions. Here, we present a high-resolution data set from multiple independent loci across the nuclear genomes of a broad sample of polar, brown, and black bears. Bayesian coalescent analyses place polar bears outside the brown bear clade and date the divergence much earlier, in the middle Pleistocene, about 600 (338 to 934) thousand years ago. This provides more time for polar bear evolution and confirms previous suggestions that polar bears carry introgressed brown bear mitochondrial DNA due to past hybridization. Our results highlight that multilocus genomic analyses are crucial for an accurate understanding of evolutionary history.

Vibration model of rolling element bearings in a rotor-bearing system for fault diagnosis

Science.gov (United States)

Cong, Feiyun; Chen, Jin; Dong, Guangming; Pecht, Michael

2013-04-01

Rolling element bearing faults are among the main causes of breakdown in rotating machines. In this paper, a rolling bearing fault model is proposed based on the dynamic load analysis of a rotor-bearing system. The rotor impact factor is taken into consideration in the rolling bearing fault signal model. The defect load on the surface of the bearing is divided into two parts, the alternate load and the determinate load. The vibration response of the proposed fault signal model is investigated and the fault signal calculating equation is derived through dynamic and kinematic analysis. Outer race and inner race fault simulations are realized in the paper. The simulation process includes consideration of several parameters, such as the gravity of the rotor-bearing system, the imbalance of the rotor, and the location of the defect on the surface. The simulation results show that different amplitude contributions of the alternate load and determinate load will cause different envelope spectrum expressions. The rotating frequency sidebands will occur in the envelope spectrum in addition to the fault characteristic frequency. This appearance of sidebands will increase the difficulty of fault recognition in intelligent fault diagnosis. The experiments given in the paper have successfully verified the proposed signal model simulation results. The test rig design of the rotor bearing system simulated several operating conditions: (1) rotor bearing only; (2) rotor bearing with loader added; (3) rotor bearing with loader and rotor disk; and (4) bearing fault simulation without rotor influence. The results of the experiments have verified that the proposed rolling bearing signal model is important to the rolling bearing fault diagnosis of rotor-bearing systems.

Polar bears at risk

Energy Technology Data Exchange (ETDEWEB)

Norris, S.; Rosentrater, L.; Eid, P.M. [WWF International Arctic Programme, Oslo (Norway)

2002-05-01

Polar bears, the world's largest terrestrial carnivore, spend much of their lives on the arctic sea ice. This is where they hunt and move between feeding, denning, and resting areas. The world population, estimated at 22,000 bears, is made up of 20 relatively distinct populations varying in size from a few hundred to a few thousand animals. About 60 per cent of all polar bears are found in Canada. In general, the status of this species is stable, although there are pronounced differences between populations. Reductions in the extent and thickness of sea ice has lead the IUCN Polar Bear Specialist Group to describe climate change as one of the major threats facing polar bears today. Though the long-term effects of climate change will vary in different areas of the Arctic, impacts on the condition and reproductive success of polar bears and their prey are likely to be negative. Longer ice-free periods resulting from earlier break-up of sea ice in the spring and later formation in the fall is already impacting polar bears in the southern portions of their range. In Canada's Hudson Bay, for example, bears hunt on the ice through the winter and into early summer, after which the ice melts completely, forcing bears ashore to fast on stored fat until freeze-up in the fall. The time bears have on the ice to hunt and build up their body condition is cut short when the ice melts early. Studies from Hudson Bay show that for every week earlier that ice break-up occurs, bears will come ashore 10 kg lighter and in poorer condition. It is likely that populations of polar bears dividing their time between land and sea will be severely reduced and local extinctions may occur as greenhouse gas emissions continue to rise and sea ice melts. Expected changes in regional weather patterns will also impact polar bears. Rain in the late winter can cause maternity dens to collapse before females and cubs have departed, thus exposing occupants to the elements and to predators. Such

Transient Vibration Prediction for Rotors on Ball Bearings Using Load-dependent Non-linear Bearing Stiffness

Science.gov (United States)

Fleming, David P.; Poplawski, J. V.

2002-01-01

Rolling-element bearing forces vary nonlinearly with bearing deflection. Thus an accurate rotordynamic transient analysis requires bearing forces to be determined at each step of the transient solution. Analyses have been carried out to show the effect of accurate bearing transient forces (accounting for non-linear speed and load dependent bearing stiffness) as compared to conventional use of average rolling-element bearing stiffness. Bearing forces were calculated by COBRA-AHS (Computer Optimized Ball and Roller Bearing Analysis - Advanced High Speed) and supplied to the rotordynamics code ARDS (Analysis of Rotor Dynamic Systems) for accurate simulation of rotor transient behavior. COBRA-AHS is a fast-running 5 degree-of-freedom computer code able to calculate high speed rolling-element bearing load-displacement data for radial and angular contact ball bearings and also for cylindrical and tapered roller beatings. Results show that use of nonlinear bearing characteristics is essential for accurate prediction of rotordynamic behavior.

Local Attitudes towards Bear Management after Illegal Feeding and Problem Bear Activity.

Science.gov (United States)

Dubois, Sara; Fraser, David

2013-09-12

The "pot bears" received international media attention in 2010 after police discovered the intentional feeding of over 20 black bears during the investigation of an alleged marijuana-growing operation in Christina Lake, British Columbia, Canada. A two-phase random digit dialing survey of the community was conducted in 2011 to understand local perspectives on bear policy and management, before and after a summer of problem bear activity and government interventions. Of the 159 households surveyed in February 2011, most had neutral or positive attitudes towards bears in general, and supported the initial decision to feed the food-conditioned bears until the autumn hibernation. In contrast to wildlife experts however, most participants supported relocating the problem bears, or allowing them to remain in the area, ahead of killing; in part this arose from notions of fairness despite the acknowledged problems of relocation. Most locals were aware of the years of feeding but did not report it, evidently failing to see it as a serious form of harm, even after many bears had been killed. This underscores the importance of preventive action on wildlife feeding and the need to narrow the gap between public and expert opinion on the likely effects of relocation versus killing.

The biodiversity and biogeography of komokiaceans and other enigmatic foraminiferan-like protists in the deep Southern Ocean

DEFF Research Database (Denmark)

Gooday, A.J.; Cedhagen, Tomas; Kamenskaya, O.E.

2007-01-01

We present a survey of komokiaceans and other relatively large, stercomata-bearing testate protists, presumed to be foraminifera, based on extensive ship-board sorting of samples collected at 13 sites (depth range 1820-4930 m) in the Weddell Sea and two sites in the SE Atlantic (Cape and Aguilas...

Genetic relationships of extant brown bears (Ursus arctos) and polar bears (Ursus maritimus).

Science.gov (United States)

Cronin, Matthew A; MacNeil, Michael D

2012-01-01

Polar bears (Ursus maritimus) and brown bears (Ursus arctos) are closely related species for which extensive mitochondrial and nuclear phylogenetic comparisons have been made. We used previously published genotype data for 8 microsatellite DNA loci from 930 brown bears in 19 populations and 473 polar bears in 16 populations to compare the population genetic relationships of extant populations of the species. Genetic distances (Nei standard distance = 1.157), the proportion of private alleles (52% of alleles are not shared by the species), and Bayesian cluster analysis are consistent with morphological and life-history characteristics that distinguish polar bears and brown bears as different species with little or no gene flow among extant populations.

Laccase detoxification mediates the nutritional alliance between leaf-cutting ants and fungus-garden symbionts.

Science.gov (United States)

De Fine Licht, Henrik H; Schiøtt, Morten; Rogowska-Wrzesinska, Adelina; Nygaard, Sanne; Roepstorff, Peter; Boomsma, Jacobus J

2013-01-08

Leaf-cutting ants combine large-scale herbivory with fungus farming to sustain advanced societies. Their stratified colonies are major evolutionary achievements and serious agricultural pests, but the crucial adaptations that allowed this mutualism to become the prime herbivorous component of neotropical ecosystems has remained elusive. Here we show how coevolutionary adaptation of a specific enzyme in the fungal symbiont has helped leaf-cutting ants overcome plant defensive phenolic compounds. We identify nine putative laccase-coding genes in the fungal genome of Leucocoprinus gongylophorus cultivated by the leaf-cutting ant Acromyrmex echinatior. One of these laccases (LgLcc1) is highly expressed in the specialized hyphal tips (gongylidia) that the ants preferentially eat, and we confirm that these ingested laccase molecules pass through the ant guts and remain active when defecated on the leaf pulp that the ants add to their gardens. This accurate deposition ensures that laccase activity is highest where new leaf material enters the fungus garden, but where fungal mycelium is too sparse to produce extracellular enzymes in sufficient quantities to detoxify phenolic compounds. Phylogenetic analysis of LgLcc1 ortholog sequences from symbiotic and free-living fungi revealed significant positive selection in the ancestral lineage that gave rise to the gongylidia-producing symbionts of leaf-cutting ants and their non-leaf-cutting ant sister group. Our results are consistent with fungal preadaptation and subsequent modification of a particular laccase enzyme for the detoxification of secondary plant compounds during the transition to active herbivory in the ancestor of leaf-cutting ants between 8 and 12 Mya.

R+D works for the further development of high temperature reactors. (1) Captive bearing experiments for active magnetic bearings. (2) Captive bearing test for HTR blowers

International Nuclear Information System (INIS)

1991-01-01

When using active magnetic bearings as blower shaft bearings, blower motors and bearings must be protected against mechanical damage in case of faults (example: total electrical supply failure due to the supply cables breaking). So-called captive bearings are provided, in order to be able to shut the blowers down safely in such faults. These captive bearings are roller bearings which are additionally fitted in the area of the blower shaft bearings, to prevent mechanical contact between the blower rotor and stator. As there was little experience available for the given boundary conditions, such as - speed, - acceleration, - bearing load, - bearing dimensions, - ambient conditions, appropriate development and tests had to be carried out. It was important to determine suitable captive bearings and the necessary ambient conditions, which will make it possible to support the failures of the magnetic bearings to be expected in 40 years' operation of the reactor without damage and to meet the requirements of the captive bearings. (orig./GL) [de

EFFECT OF BEARING MACROGEOMETRY ON BEARING PERFORMANCE IN ELASTOHYDRODYNAMIC LUBRICATION

Directory of Open Access Journals (Sweden)

Emin GÜLLÜ

2000-01-01

Full Text Available During manufacturing, ideal dimension and mutual positioning of machine elements proposed in project desing can be achieved only within certain range of tolerances. These tolerances, being classified in two groups, related to micro and macro geometry of machine elements, don't have to effect the functioning of these elements. So, as for all machine elements, investigation of the effects of macro and micro tolerances for journal bearings is important. In this study, we have investigated the effect of macro geometric irregularities of journal bearings on performance characteristics. In this regard, we have studied the change of bearing performance in respect to deviation from ideal circle for an elliptic shaft with small ovality rolling in circular journal bearing.

Ecological tolerances of Miocene larger benthic foraminifera from Indonesia

Science.gov (United States)

Novak, Vibor; Renema, Willem

2018-01-01

To provide a comprehensive palaeoenvironmental reconstruction based on larger benthic foraminifera (LBF), a quantitative analysis of their assemblage composition is needed. Besides microfacies analysis which includes environmental preferences of foraminiferal taxa, statistical analyses should also be employed. Therefore, detrended correspondence analysis and cluster analysis were performed on relative abundance data of identified LBF assemblages deposited in mixed carbonate-siliciclastic (MCS) systems and blue-water (BW) settings. Studied MCS system localities include ten sections from the central part of the Kutai Basin in East Kalimantan, ranging from late Burdigalian to Serravallian age. The BW samples were collected from eleven sections of the Bulu Formation on Central Java, dated as Serravallian. Results from detrended correspondence analysis reveal significant differences between these two environmental settings. Cluster analysis produced five clusters of samples; clusters 1 and 2 comprise dominantly MCS samples, clusters 3 and 4 with dominance of BW samples, and cluster 5 showing a mixed composition with both MCS and BW samples. The results of cluster analysis were afterwards subjected to indicator species analysis resulting in the interpretation that generated three groups among LBF taxa: typical assemblage indicators, regularly occurring taxa and rare taxa. By interpreting the results of detrended correspondence analysis, cluster analysis and indicator species analysis, along with environmental preferences of identified LBF taxa, a palaeoenvironmental model is proposed for the distribution of LBF in Miocene MCS systems and adjacent BW settings of Indonesia.

Passive magnetic bearing configurations

Science.gov (United States)

Post, Richard F [Walnut Creek, CA

2011-01-25

A journal bearing provides vertical and radial stability to a rotor of a passive magnetic bearing system when the rotor is not rotating and when it is rotating. In the passive magnetic bearing system, the rotor has a vertical axis of rotation. Without the journal bearing, the rotor is vertically and radially unstable when stationary, and is vertically stable and radially unstable when rotating.

Exploring the potential for actinobacteria as defensive symbionts in fungus-growing termites

DEFF Research Database (Denmark)

Visser, Anna A.; Nobre, Tânia; Currie, Cameron R.

2012-01-01

In fungus-growing termites, fungi of the subgenus Pseudoxylaria threaten colony health through substrate competition with the termite fungus (Termitomyces). The potential mechanisms with which termites suppress Pseudoxylaria have remained unknown. Here we explore if Actinobacteria potentially play...... a role as defensive symbionts against Pseudoxylaria in fungus-growing termites. We sampled for Actinobacteria from 30 fungus-growing termite colonies, spanning the three main termite genera and two geographically distant sites. Our isolations yielded 360 Actinobacteria, from which we selected subsets...... for morphological (288 isolates, grouped in 44 morphotypes) and for 16S rRNA (35 isolates, spanning the majority of morphotypes) characterisation. Actinobacteria were found throughout all sampled nests and colony parts and, phylogenetically, they are interspersed with Actinobacteria from origins other than fungus...

Analysis of amino acid and codon usage in Paramecium bursaria.

Science.gov (United States)

Dohra, Hideo; Fujishima, Masahiro; Suzuki, Haruo

2015-10-07

The ciliate Paramecium bursaria harbors the green-alga Chlorella symbionts. We reassembled the P. bursaria transcriptome to minimize falsely fused transcripts, and investigated amino acid and codon usage using the transcriptome data. Surface proteins preferentially use smaller amino acid residues like cysteine. Unusual synonymous codon and amino acid usage in highly expressed genes can reflect a balance between translational selection and other factors. A correlation of gene expression level with synonymous codon or amino acid usage is emphasized in genes down-regulated in symbiont-bearing cells compared to symbiont-free cells. Our results imply that the selection is associated with P. bursaria-Chlorella symbiosis. Copyright © 2015 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Comparison of fixed-bearing and mobile-bearing total knee arthroplasty after high tibial osteotomy.

Science.gov (United States)

Hernigou, Philippe; Huys, Maxime; Pariat, Jacques; Roubineau, François; Flouzat Lachaniette, Charles Henri; Dubory, Arnaud

2018-02-01

There is no information comparing the results of fixed-bearing total knee replacement and mobile-bearing total knee replacement in the same patients previously treated by high tibial osteotomy. The purpose was therefore to compare fixed-bearing and mobile-bearing total knee replacements in patients treated with previous high tibial osteotomy. We compared the results of 57 patients with osteoarthritis who had received a fixed-bearing prosthesis after high tibial osteotomy with the results of 41 matched patients who had received a rotating platform after high tibial osteotomy. The match was made for length of follow-up period. The mean follow-up was 17 years (range, 15-20 years). The patients were assessed clinically and radiographically. The pre-operative knee scores had no statistically significant differences between the two groups. So was the case with the intra-operative releases, blood loss, thromboembolic complications and infection rates in either group. There was significant improvement in both groups of knees, and no significant difference was observed between the groups (i.e., fixed-bearing and mobile-bearing knees) for the mean Knee Society knee clinical score (95 and 92 points, respectively), or the Knee Society knee functional score (82 and 83 points, respectively) at the latest follow-up. However, the mean post-operative knee motion was higher for the fixed-bearing group (117° versus 110°). In the fixed-bearing group, one knee was revised because of periprosthetic fracture. In the rotating platform mobile-bearing group, one knee was revised because of aseptic loosening of the tibial component. The Kaplan-Meier survivorship for revision at ten years of follow-up was 95.2% for the fixed bearing prosthesis and 91.1% for the rotating platform mobile-bearing prosthesis. Although we did manage to detect significant differences mainly in clinical and radiographic results between the two groups, we found no superiority or inferiority of the mobile-bearing

Hydrodynamic sliding bearings vs. roller bearings. Segmented sliding bearings for higher rotational speed; Hydrodynamische Gleitlager versus Waelzlager. Segmentgleitlager fuer hoehere Drehzahlen

Energy Technology Data Exchange (ETDEWEB)

Hagenhoff, M.; Sauer, M. [Main-Metall-Giesserei Fritz Schorr GmbH und Co. KG, Altenglan (Germany)

2004-10-01

Hydrodynamic sliding bearings are considered only in cases when roller bearings reach their speed limits and there is no other solution. However, this view neglects the fact that there are modern, optimised sliding bearings which have more advantages over roller bearings than should be expected. Many producers of sliding bearings also have computer programs enabling them to offer customised solutions, i.e. optimal adaptation of the bearings to their specific operating conditions. (orig.) [German] Hydrodynamische Gleitlager werden oft erst dann in Betracht gezogen, wenn man an die Drehzahlgrenzen von Waelzlagern stoesst und keine andere sinnvolle Alternative mehr in Frage kommt. Dabei uebersieht man leicht, dass es moderne, optimierte Gleitlagerkonstruktionen gibt, die weitaus haeufiger ihre Staerken im Vergleich zu Waelzlagern ausspielen koennen als zunaechst vermutet. Viele Gleitlagerhersteller haben zudem heute Berechnungsprogramme zur Verfuegung, die eine optimale Anpassung der Lager an die speziellen Betriebsbedingungen erlauben. (orig.)

Genomic evidence of geographically widespread effect of gene flow from polar bears into brown bears

OpenAIRE

Cahill, James A; Stirling, Ian; Kistler, Logan; Salamzade, Rauf; Ersmark, Erik; Fulton, Tara L; Stiller, Mathias; Green, Richard E; Shapiro, Beth

2015-01-01

© 2014 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd. Polar bears are an arctic, marine adapted species that is closely related to brown bears. Genome analyses have shown that polar bears are distinct and genetically homogeneous in comparison to brown bears. However, these analyses have also revealed a remarkable episode of polar bear gene flow into the population of brown bears that colonized the Admiralty, Baranof and Chichagof islands (ABC islands) of Alaska. Here, we...

The role of human outdoor recreation in shaping patterns of grizzly bear-black bear co-occurrence.

Directory of Open Access Journals (Sweden)

Andrew Ladle

Full Text Available Species' distributions are influenced by a combination of landscape variables and biotic interactions with other species, including people. Grizzly bears and black bears are sympatric, competing omnivores that also share habitats with human recreationists. By adapting models for multi-species occupancy analysis, we analyzed trail camera data from 192 trail camera locations in and around Jasper National Park, Canada to estimate grizzly bear and black bear occurrence and intensity of trail use. We documented (a occurrence of grizzly bears and black bears relative to habitat variables (b occurrence and intensity of use relative to competing bear species and motorised and non-motorised recreational activity, and (c temporal overlap in activity patterns among the two bear species and recreationists. Grizzly bears were spatially separated from black bears, selecting higher elevations and locations farther from roads. Both species co-occurred with motorised and non-motorised recreation, however, grizzly bears reduced their intensity of use of sites with motorised recreation present. Black bears showed higher temporal activity overlap with recreational activity than grizzly bears, however differences in bear daily activity patterns between sites with and without motorised and non-motorised recreation were not significant. Reduced intensity of use by grizzly bears of sites where motorised recreation was present is a concern given off-road recreation is becoming increasingly popular in North America, and can negatively influence grizzly bear recovery by reducing foraging opportunities near or on trails. Camera traps and multi-species occurrence models offer non-invasive methods for identifying how habitat use by animals changes relative to sympatric species, including humans. These conclusions emphasise the need for integrated land-use planning, access management, and grizzly bear conservation efforts to consider the implications of continued access for

The role of human outdoor recreation in shaping patterns of grizzly bear-black bear co-occurrence.

Science.gov (United States)

Ladle, Andrew; Steenweg, Robin; Shepherd, Brenda; Boyce, Mark S

2018-01-01

Species' distributions are influenced by a combination of landscape variables and biotic interactions with other species, including people. Grizzly bears and black bears are sympatric, competing omnivores that also share habitats with human recreationists. By adapting models for multi-species occupancy analysis, we analyzed trail camera data from 192 trail camera locations in and around Jasper National Park, Canada to estimate grizzly bear and black bear occurrence and intensity of trail use. We documented (a) occurrence of grizzly bears and black bears relative to habitat variables (b) occurrence and intensity of use relative to competing bear species and motorised and non-motorised recreational activity, and (c) temporal overlap in activity patterns among the two bear species and recreationists. Grizzly bears were spatially separated from black bears, selecting higher elevations and locations farther from roads. Both species co-occurred with motorised and non-motorised recreation, however, grizzly bears reduced their intensity of use of sites with motorised recreation present. Black bears showed higher temporal activity overlap with recreational activity than grizzly bears, however differences in bear daily activity patterns between sites with and without motorised and non-motorised recreation were not significant. Reduced intensity of use by grizzly bears of sites where motorised recreation was present is a concern given off-road recreation is becoming increasingly popular in North America, and can negatively influence grizzly bear recovery by reducing foraging opportunities near or on trails. Camera traps and multi-species occurrence models offer non-invasive methods for identifying how habitat use by animals changes relative to sympatric species, including humans. These conclusions emphasise the need for integrated land-use planning, access management, and grizzly bear conservation efforts to consider the implications of continued access for motorised

Unbalance Response Prediction for Rotors on Ball Bearings Using Speed and Load Dependent Nonlinear Bearing Stiffness

Science.gov (United States)

Fleming, David P.; Poplawski, J. V.

2003-01-01

Rolling-element bearing forces vary nonlinearly with bearing deflection. Thus an accurate rotordynamic analysis requires that bearing forces corresponding to the actual bearing deflection be utilized. For this work bearing forces were calculated by COBRA-AHS, a recently developed rolling-element bearing analysis code. Bearing stiffness was found to be a strong function of bearing deflection, with higher deflection producing markedly higher stiffness. Curves fitted to the bearing data for a range of speeds and loads were supplied to a flexible rotor unbalance response analysis. The rotordynamic analysis showed that vibration response varied nonlinearly with the amount of rotor imbalance. Moreover, the increase in stiffness as critical speeds were approached caused a large increase in rotor and bearing vibration amplitude over part of the speed range compared to the case of constant bearing stiffness. Regions of bistable operation were possible, in which the amplitude at a given speed was much larger during rotor acceleration than during deceleration. A moderate amount of damping will eliminate the bistable region, but this damping is not inherent in ball bearings.

Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum

KAUST Repository

Liew, Yi Jin

2017-03-01

RNA editing is a rare post-transcriptional event that provides cells with an additional level of gene expression regulation. It has been implicated in various processes including adaptation, viral defence and RNA interference; however, its potential role as a mechanism in acclimatization has just recently been recognised. Here, we show that RNA editing occurs in 1.6% of all nuclear-encoded genes of Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. All base-substitution edit types were present, and statistically significant motifs were associated with three edit types. Strikingly, a subset of genes exhibited condition-specific editing patterns in response to different stressors that resulted in significant increases of non-synonymous changes. We posit that this previously unrecognised mechanism extends this organism’s capability to respond to stress beyond what is encoded by the genome. This in turn may provide further acclimatization capacity to these organisms, and by extension, their coral hosts.

Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum

KAUST Repository

Liew, Yi Jin; Li, Yong; Baumgarten, Sebastian; Voolstra, Christian R.; Aranda, Manuel

2017-01-01

RNA editing is a rare post-transcriptional event that provides cells with an additional level of gene expression regulation. It has been implicated in various processes including adaptation, viral defence and RNA interference; however, its potential role as a mechanism in acclimatization has just recently been recognised. Here, we show that RNA editing occurs in 1.6% of all nuclear-encoded genes of Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. All base-substitution edit types were present, and statistically significant motifs were associated with three edit types. Strikingly, a subset of genes exhibited condition-specific editing patterns in response to different stressors that resulted in significant increases of non-synonymous changes. We posit that this previously unrecognised mechanism extends this organism’s capability to respond to stress beyond what is encoded by the genome. This in turn may provide further acclimatization capacity to these organisms, and by extension, their coral hosts.

Local Attitudes towards Bear Management after Illegal Feeding and Problem Bear Activity

Directory of Open Access Journals (Sweden)

David Fraser

2013-09-01

Full Text Available The “pot bears” received international media attention in 2010 after police discovered the intentional feeding of over 20 black bears during the investigation of an alleged marijuana-growing operation in Christina Lake, British Columbia, Canada. A two-phase random digit dialing survey of the community was conducted in 2011 to understand local perspectives on bear policy and management, before and after a summer of problem bear activity and government interventions. Of the 159 households surveyed in February 2011, most had neutral or positive attitudes towards bears in general, and supported the initial decision to feed the food-conditioned bears until the autumn hibernation. In contrast to wildlife experts however, most participants supported relocating the problem bears, or allowing them to remain in the area, ahead of killing; in part this arose from notions of fairness despite the acknowledged problems of relocation. Most locals were aware of the years of feeding but did not report it, evidently failing to see it as a serious form of harm, even after many bears had been killed. This underscores the importance of preventive action on wildlife feeding and the need to narrow the gap between public and expert opinion on the likely effects of relocation versus killing.

Bearing construction for refrigeration compresssor

Science.gov (United States)

Middleton, Marc G.; Nelson, Richard T.

1988-01-01

A hermetic refrigeration compressor has a cylinder block and a crankshaft rotatable about a vertical axis to reciprocate a piston in a cylinder on the cylinder block. A separate bearing housing is secured to the central portion of the cylinder block and extends vertically along the crankshaft, where it carries a pair of roller bearings to journal the crankshaft. The crankshaft has a radially extending flange which is journaled by a thrust-type roller bearing above the bearing housing to absorb the vertical forces on the crankshaft so that all three of the roller bearings are between the crankshaft and the bearing housing to maintain and control the close tolerances required by such bearings.

A semi-analytical bearing model considering outer race flexibility for model based bearing load monitoring

Science.gov (United States)

Kerst, Stijn; Shyrokau, Barys; Holweg, Edward

2018-05-01

This paper proposes a novel semi-analytical bearing model addressing flexibility of the bearing outer race structure. It furthermore presents the application of this model in a bearing load condition monitoring approach. The bearing model is developed as current computational low cost bearing models fail to provide an accurate description of the more and more common flexible size and weight optimized bearing designs due to their assumptions of rigidity. In the proposed bearing model raceway flexibility is described by the use of static deformation shapes. The excitation of the deformation shapes is calculated based on the modelled rolling element loads and a Fourier series based compliance approximation. The resulting model is computational low cost and provides an accurate description of the rolling element loads for flexible outer raceway structures. The latter is validated by a simulation-based comparison study with a well-established bearing simulation software tool. An experimental study finally shows the potential of the proposed model in a bearing load monitoring approach.

Bottom water production variability in the Ross Sea slope during the Late-Pleistocene-Holocene as revealed by benthic foraminifera and sediment geochemistry

Science.gov (United States)

Asioli, A.; Langone, L.; Tateo, F.; Giannossi, M. L.; Giglio, F.; Summa, V.; Piva, A.; Ridente, D.; Trincardi, F.

2009-04-01

The Antarctic area produces bottom waters that ventilate the vast majority of the deep basins in the rest of the world ocean. The rate of formation in the source area and the strength of these cold bottom waters affect their flow toward the equator and are key factors affecting the Global Thermohaline Circulation during modern and past climate conditions. We present the results of a multidisciplinary study carried out on a core collected in 2377m of water depth on the slope off the Drygalski Basin (Ross Sea), along the modern path of the bottom waters. The goal of this research is to detect a qualitative signal of possible changes in the rate of bottom water production during the Late Pleistocene-Holocene by integrating micropaleontological and geochemical proxies. The micropaleontological signal is represented by the quantitative and qualitative variations of the agglutinated benthic foraminifera assemblages, while the amount of TOC, nitrogen, δ13C, δ15N, biogenic silica, CaCO3 in the sediment, along with the bulk rock mineralogy, provide information on the paleoproductivity and allow reconstruction of changes in the paleocirculation. The chronology is supported by 14C AMS datings on organic matter. Although this study is still in progress, the results obtained allow the following observations: 1) the Holocene sequence includes a major turnover around 8-8.5 calib kyr BP, leading to reduced nutrient utilization, probably reflecting an increased nutrient supply induced by an enhanced Upper Circumpolar Deep Water upwelling; 2) within this general context, the total concentration of benthic foraminifera preserved in the fossil component records millennial scale cycles of variable amplitude after 8.5 calib kyr BP and to present time. This oscillatory trend is paralleled by other parameters, such as the magnetic susceptibility, the dry density, the sheet silicates and the δ15N; 3) minima in foraminifera concentration reflect relatively increased dissolution, weaker

The long way of planktonic Foraminifera from biostratigraphy to paleoceanography (Jean Baptiste Lamarck Medal Lecture)

Science.gov (United States)

Premoli Silva, Isabella

2014-05-01

The mid of the last century was a time of flourishing studies concerning the importance of planktonic foraminifera in precisely dating and correlating sedimentary successions after the publication of the first biostratigraphic schemes provided by the Suisse Group (i.e. Kugler, Bolli, Broennimann) from the Caribbean region and former Southern USSR (Subbotina). Soon after Bolli's Trinidad scheme was widespread, planktonic foraminiferal distribution from Upper Cretaceous to Miocene was investigated intensively for dating the Neogene stratotypes, whose identifications were mainly based on poorly age-diagnostic, facies-controlled macrofossils, and for calibrating Paleogene larger foraminiferal distributions. Since these early works planktonic foraminiferal biostratigraphy was continously ameliorated, extended in time from Early Cretaceous to Recent by several authors and from different settings and domains, reaching progressively the current higher resolution, now calibrated to calcareous nannofossil distributions. To be mentioned, the detailed biostratigraphic studies on the Gubbio section (central Italy) provided (1) the first carefull documentation of the mass extinction of Cretaceous planktonic foraminifera, the presence of tiny Cretaceous survivors, and the rapid recovery of Danian assemblages, and (2) the first calibration of the Upper Cretaceous to Eocene reversal polarity scale in which the K/Pg boundary was demonstrated to fall within the magnetic reversal C29r. A major step forward was the recovery, since 1968, of several thousand of cores from over 1000 holes drilled in all oceans by the DSDP, ODP and IODP projects. The recovery of deep-sea sediments from all latitudes opened a new research field, the paleoceanography. Based on the large knowledge acquired on modern organisms in the '60s, for the Paleogene and Cretaceous reconstructions we started from the assumption that these extinct organisms lived in the water column like their modern counterpart and were

EFFECT OF CLEARANCE THE BALL BEARINGS ON INCORRECT WORK OF THREE-SUPORT BEARING SHAFT

OpenAIRE

Jarosław KACZOR

2014-01-01

Durability deep groove ball bearings depends on factors (called attributes) design, technological and operational. Among the design features one of the most important is play in the bearings. Polish Norm shows five groups of looseness in the bearings, in which the play range from 0 to 105 microns. Manufacturers of rolling bearings they only play group, which has a bearing data, without giving the exact value of the slack. Aim of this study is to determine how it affects the play in the bea...

Constraining Seasonal and Vertical Distributions of Planktonic Foraminifera for Paleoclimate Reconstruction Since MIS3 at the Axial Seamount, Juan de Fuca Ridge

Science.gov (United States)

Chen, S. L.; Ravelo, A. C.; Clague, D. A.

2015-12-01

The California Current is an upwelling region with dynamic interactions between circulation, biological productivity and ecology. A 77 cm piston push core was taken from the Juan de Fuca Ridge Axial Seamount using a Remotely Operated Vehicle (ROV) (2213m, 45.55º N, 130.08º W), an active submarine volcano ~480 km off Oregon's coast. Five radiocarbon dates indicate that the sediment ranges from 42.6 ka at 77 cm to 17.6 ka at 15 cm, with an average sediment accumulation rate of 2.47 cm/ka from 77-15 cm, and an average rate of 0.85 cm/ka during the postglacial period (the core representing subtropical, subartic, and arctic fauna have been used to constrain changes in vertical and seasonal temperature since Marine Isotope Stage 3 (MIS3). Measurements of δ18O of the upwelling species Globigerina bulloides, the thermocline dwelling species Neogloboquadrina dutertrei, and the warm mixed-layer species Orbulina universa are offset from each other, reflecting vertical and seasonal variation among the planktonic foraminifera. Of the three species, G. bulloides shows the least variation in δ18O, possibly indicating that marked changes in temperature are masking changes in the δ18O of seawater due to global ice volume changes. G. bulloides and O. universa δ18O values are similar in MIS 3 and diverge with time, indicating the development of strong seasonal succession of species, since the last glacial maximum. Bulk nitrogen isotopes and nitrogen flux provide additional constraints on upwelling strength and insight into local biological productivity and nutrient dynamics. Obtaining Mg/Ca data will clarify the δ 18O interpretation except deep in the core where metal-bearing authigenic precipitates affect Mg concentrations. These climatic proxies together provide insight into how global climate change and local seamount volcanism impacts regional productivity in the California Current.

Gymnoxanthella radiolariae gen. et sp. nov. (Dinophyceae), a dinoflagellate symbiont from solitary polycystine radiolarians.

Science.gov (United States)

Yuasa, Tomoko; Horiguchi, Takeo; Mayama, Shigeki; Takahashi, Osamu

2016-02-01

The symbiotic dinoflagellate Gymnoxanthella radiolariae T. Yuasa et T. Horiguchi gen. et sp. nov. isolated from polycystine radiolarians is described herein based on light, scanning and transmission electron microscopy as well as molecular phylogenetic analyses of SSU and LSU rDNA sequences. Motile cells of G. radiolariae were obtained in culture, and appeared to be unarmored. The cells were 9.1-11.4 μm long and 5.7-9.4 μm wide, and oval to elongate oval in the ventral view. They possessed an counterclockwise horseshoe-shaped apical groove, a nuclear envelope with vesicular chambers, cingulum displacement with one cingulum width, and the nuclear fibrous connective; all of these are characteristics of Gymnodinium sensu stricto (Gymnodinium s.s.). Molecular phylogenetic analyses also indicated that G. radiolariae belongs to the clade of Gymnodinium s.s. However, in our molecular phylogenetic trees, G. radiolariae was distantly related to Gymnodinium fuscum, the type species of Gymnodinium. Based on the consistent morphological, genetic, and ecological divergence of our species with the other genera and species of Gymnodinium s.s., we considered it justified to erect a new, separate genus and species G. radiolariae gen. et sp. nov. As for the peridinioid symbiont of radiolarians, Brandtodinium has been erected as a new genus instead of Zooxanthella, but the name Zooxanthella is still valid. Brandtodinium is a junior synonym of Zooxanthella. Our results suggest that at least two dinoflagellate symbiont species, peridinioid Zooxanthella nutricula and gymnodinioid G. radiolariae, exist in radiolarians, and that they may have been mixed and reported as "Z. nutricula" since the 19th century. © 2016 Phycological Society of America.

Larger foraminifera of the Devil's Den and Blue Hole sinkholes, Florida

Science.gov (United States)

Cotton, Laura J.; Eder, Wolfgang; Floyd, James

2018-03-01

Shallow-water carbonate deposits are well-known from the Eocene of the US Gulf Coast and Caribbean. These deposits frequently contain abundant larger benthic foraminifera (LBF). However, whilst integrated stratigraphic studies have helped to refine the timing of LBF overturning events within the Tethys and Indo-Pacific regions with respect to global bio- and chemo-stratigraphic records, little recent work has been carried out in the Americas. The American LBF assemblages are distinctly different from those of Europe and the Indo-Pacific. It is therefore essential that the American bio-province is included in studies of LBF evolution, biodiversity and climate events to understand these processes on a global scale.Here we present the LBF ranges from two previously unpublished sections spanning 35 and 29 m of the upper Eocene Ocala limestone, as the early stages of a larger project addressing the taxonomy and biostratigraphy of the LBF of Florida. The study indicates that the lower member of the Ocala limestone may be Bartonian rather than Priabonian in age, with implications for the biostratigraphy of the region. In addition, the study highlights the need for multiple sites to assess the LBF assemblages and fully constrain ranges across Florida and the US Gulf and suggests potential LBF events for future integrated stratigraphic study.

The architecture and associated fauna of Perouvianella peruviana, an endemic larger benthic foraminifera from the Cenomanian–Turonian transition interval of central Peru

DEFF Research Database (Denmark)

Consorti, Lorenzo; Navarro-Ramirez, Juan Pablo; Bodin, Stéphane

2018-01-01

-strategist foraminifera coexisted with P. peruviana. Moreover, a first description of the soritid taxa Pseudopeneroplis oyonensis n. gen., n. sp. is provided. Interestingly,the superposition of local and global environmental patterns onto the Western Peruvian shelf water masses triggered a mass development...... that were not affected by environmental conditions related to the Cenomanian–Turonian transition. A new architectural analysis of P. peruviana tests found in abundance in central Peru has permitted a detailed update on its systematic and functional morphology. The paleoenvironment associated with the P...

Bearing restoration by grinding

Science.gov (United States)

Hanau, H.; Parker, R. J.; Zaretsky, E. V.; Chen, S. M.; Bull, H. L.

1976-01-01

A joint program was undertaken by the NASA Lewis Research Center and the Army Aviation Systems Command to restore by grinding those rolling-element bearings which are currently being discarded at aircraft engine and transmission overhaul. Three bearing types were selected from the UH-1 helicopter engine (T-53) and transmission for the pilot program. No bearing failures occurred related to the restoration by grinding process. The risk and cost of a bearing restoration by grinding programs was analyzed. A microeconomic impact analysis was performed.

Impact of Fixed-Bearing and Mobile-Bearing Tibial Insert in Unicondylar Knee Arthroplasty

Directory of Open Access Journals (Sweden)

Mehmet Faruk Çatma

2016-06-01

Full Text Available INTRODUCTION: The aim of the study is to investigate the impact of fixed or mobile-bearing tibial inserts on patellofemoral arthrosis and evaluate which one to be preferred for patients with patellofemoral arthrosis. METHODS: Operated in our clinic between January 2009 and February 2013, 33 with patellofemoral arthritis together with anteromedial compartment arthritis were included in the study. Patellofemoral joints of patients were evaluated according to the scoring system defined by Fulkerson-Shea. RESULTS: Unicondylar knee arthroplasty with fixed-bearing tibial insertsand 22 (66,6% (male: 3, female: 19 and unicondylar knee arthroplasty with mobile-bearing tibial inserts 11 (33,9 % (male: 2, female: 9 were implanted.Average knee flexion was found to be 116,5 (100-135 degrees in 22 patients with mobile-bearing tibial inserts, and 114,5 (95-135 in 11 patients with fixed-bearing tibial inserts. DISCUSSION AND CONCLUSION: Patellofemoral arthrosis is an important factor for unicondylar knee arthroplasty prognosis and one of the determinants of patient satisfaction. Significantly less patellofemoral complaints were seen with UKA with fixed-bearing tibial insert compared to mobile-bearing tibial insert.

Diversity and distribution of entomopathogenic nematodes (Nematoda: Steinernematidae, Heterorhabditidae) and their bacterial symbionts (gamma-Proteobacteria: Enterobacteriaceae) in Jordan.

Science.gov (United States)

Stock, S Patricia; Al Banna, Luma; Darwish, Rula; Katbeh, Ahmad

2008-06-01

Until now, only a few systematic surveys of entomopathogenic nematodes (EPN) have been conducted in Middle Eastern countries. Many of the recovered EPN species in this region have shown to own distinctive qualities that enable their survival in unique environments, such as high temperatures and low moisture levels tolerance. These new species and strains, with unique environmental tolerances, are more suitable for their consideration in pest management programs in xerophytic regions. With this background in mind, we recently conducted a survey of EPN in Jordan. This study records for the first time the diversity and distribution of these nematodes and their bacterial symbionts in this country. Jordan's three geographic regions: (1) the highlands, (2) Jordan valley and (3) the desert region were sampled. Within each region, natural habitats and agricultural regions characteristic to each region were considered for sampling purposes. Four EPN species including three Steinernema and one Heterorhabditis were recovered. Nematodes were identified using a combination of molecular markers and classic morphological diagnostic tools. Bacterial symbionts were identified by analysis of 16S rRNA sequences. Abiotic characteristics such as soil type, soil pH, and elevation were also recorded. We herein report the diversity of EPN species in Jordan and discuss their potential in Biocontrol and IPM programs for this country.

Taxonomy and phylogeny of a new kleptoplastidal dinoflagellate, Gymnodinium myriopyrenoides sp. nov. (Gymnodiniales, Dinophyceae), and its cryptophyte symbiont.

Science.gov (United States)

Yamaguchi, Haruyo; Nakayama, Takeshi; Kai, Atsushi; Inouye, Isao

2011-10-01

A new kleptoplastidal dinoflagellate, Gymnodinium myriopyrenoides sp. nov., was described using light microscopy, electron microscopy and phylogengetic analysis based on partial LSU rDNA sequences. Cells were dorsiventrally flattened, elongate-elliptical in ventral view. There was no displacement of the cingulum encircling the anterior part of the cell. The cingulum was curved posteriorly at the terminal junction with the sulcus. The sulcus was generally narrow but expanded in the posterior end. The epicone possessed an apical groove made of one and one-half counterclockwise revolutions. Phylogenetic analysis based on LSU rDNA showed that the sequence of G. myriopyrenoides was included in the Gymnodiniales sensu stricto clade and had special affinities with the species Amphidinium poecilochroum and Gymnodinium acidotum, which also harbor kleptochloroplasts. Phylogenetic analysis based on plastid-encoded SSU rDNA and ultrastructural observations suggested that the symbionts of G. myriopyrenoides were cryptophytes of the genus Chroomonas or Hemiselmis. Organelles including the nucleus, the nucleomorph, mitochondria, Golgi bodies and large chloroplasts remained in the cytoplasm of the symbionts, but not the periplast, ejectosomes or flagellar apparatus. The symbiotic level of G. myriopyrenoides was estimated to be a relatively early stage in the unarmored kleptoplastidal dinoflagellates. Copyright © 2011 Elsevier GmbH. All rights reserved.

Climate Drives Polar Bear Origins

Science.gov (United States)

In their provocative analysis of northern bears (“Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage,” Reports, 20 April, p. 344), F. Hailer et al. use independent nuclear loci to show that polar bears originated during the middle Pleistocene, rather than during t...

Nitrogen transfer in the interface between the symbionts in pea root nodules

DEFF Research Database (Denmark)

Rosendahl, L.; Mouritzen, P.; Rudbeck, A.

2001-01-01

Transport mechanisms for transfer of nitrogen from the bacteroid side across the symbiosome membrane of pea (Pisum sativum L.) root nodules were identified by the use of energised bacteroid side-out symbiosome membrane vesicles. Such membrane vesicles were used to study a mechanism with high...... was not observed. The ammonium transporter has been identified as a voltage-driven channel whereas the symbiosome membrane aspartate transporter appears to be a H+/aspartate symport. The results suggest that nitrogen transfer between the symbionts in pea root nodules involves transfer of amino acids as well...... capacity for transport of ammonium and another mechanism capable of transporting aspartate. Both transport mechanisms are voltage driven and the rate of transport relates positively to the magnitude of the imposed membrane potentials. Competition for transport between ammonium and aspartate...

Fine-Scale Biogeographical Boundary Delineation and Sub-population Resolution in the Symbiodinium thermophilum Coral Symbiont Group From the Persian/Arabian Gulf and Gulf of Oman

KAUST Repository

Hume, Benjamin C. C.; D'Angelo, Cecilia; Burt, John A.; Wiedenmann, Jö rg

2018-01-01

The adaptation of tropical coral communities to the world's hottest sea, the Persian/Arabian Gulf (PAG), has recently been associated with ecological selection acting on a group of coral-associated algal symbionts, the Symbiodinium thermophilum

Bacteriocins with a broader antimicrobial spectrum prevail in enterococcal symbionts isolated from the hoopoe's uropygial gland.

Science.gov (United States)

Ruiz-Rodríguez, Magdalena; Martínez-Bueno, Manuel; Martín-Vivaldi, Manuel; Valdivia, Eva; Soler, Juan J

2013-09-01

The use of compounds produced by symbiotic bacteria against pathogens in animals is one of the most exciting discoveries in ecological immunology. The study of those antibiotic metabolites will enable an understanding of the defensive strategies against pathogenic infections. Here, we explore the role of bacteriocins explaining the antimicrobial properties of symbiotic bacteria isolated from the uropygial gland of the hoopoe (Upupa epops). The antagonistic activity of 187 strains was assayed against eight indicator bacteria, and the presence of six bacteriocin genes was detected in the genomic DNA. The presence of bacteriocin genes correlated with the antimicrobial activity of isolates. The most frequently detected bacteriocin genes were those encoding for the MR10 and AS-48 enterocins, which confer the highest inhibition capacity. All the isolates belonged to the genus Enterococcus, with E. faecalis as the most abundant species, with the broadest antimicrobial spectrum and the highest antagonistic activity. The vast majority of E. faecalis strains carried the genes of MR10 and AS-48 in their genome. Therefore, we suggest that fitness-related benefits for hoopoes associated with harbouring the most bactericidal symbionts cause the highest frequency of strains carrying MR10 and AS-48 genes. The study of mechanisms associated with the acquisition and selection of bacterial symbionts by hoopoes is necessary, however, to reach further conclusions. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Variation in the composition of corals, fishes, sponges, echinoderms, ascidians, molluscs, foraminifera and macroalgae across a pronounced in-to-offshore environmental gradient in the Jakarta Bay-Thousand Islands coral reef complex.

Science.gov (United States)

Cleary, D F R; Polónia, A R M; Renema, W; Hoeksema, B W; Rachello-Dolmen, P G; Moolenbeek, R G; Budiyanto, A; Yahmantoro; Tuti, Y; Giyanto; Draisma, S G A; Prud'homme van Reine, W F; Hariyanto, R; Gittenberger, A; Rikoh, M S; de Voogd, N J

2016-09-30

Substrate cover, water quality parameters and assemblages of corals, fishes, sponges, echinoderms, ascidians, molluscs, benthic foraminifera and macroalgae were sampled across a pronounced environmental gradient in the Jakarta Bay-Thousand Islands reef complex. Inshore sites mainly consisted of sand, rubble and turf algae with elevated temperature, dissolved oxygen, pH and chlorophyll concentrations and depauperate assemblages of all taxa. Live coral cover was very low inshore and mainly consisted of sparse massive coral heads and a few encrusting species. Faunal assemblages were more speciose and compositionally distinct mid- and offshore compared to inshore. There were, however, small-scale differences among taxa. Certain midshore sites, for example, housed assemblages resembling those typical of the inshore environment but this differed depending on the taxon. Substrate, water quality and spatial variables together explained from 31% (molluscs) to 72% (foraminifera) of the variation in composition. In general, satellite-derived parameters outperformed locally measured parameters. Copyright © 2016 Elsevier Ltd. All rights reserved.

Growth dynamics of the threatened Caribbean staghorn coral Acropora cervicornis: influence of host genotype, symbiont identity, colony size, and environmental setting.

Science.gov (United States)

Lirman, Diego; Schopmeyer, Stephanie; Galvan, Victor; Drury, Crawford; Baker, Andrew C; Baums, Iliana B

2014-01-01

The drastic decline in the abundance of Caribbean acroporid corals (Acropora cervicornis, A. palmata) has prompted the listing of this genus as threatened as well as the development of a regional propagation and restoration program. Using in situ underwater nurseries, we documented the influence of coral genotype and symbiont identity, colony size, and propagation method on the growth and branching patterns of staghorn corals in Florida and the Dominican Republic. Individual tracking of> 1700 nursery-grown staghorn fragments and colonies from 37 distinct genotypes (identified using microsatellites) in Florida and the Dominican Republic revealed a significant positive relationship between size and growth, but a decreasing rate of productivity with increasing size. Pruning vigor (enhanced growth after fragmentation) was documented even in colonies that lost 95% of their coral tissue/skeleton, indicating that high productivity can be maintained within nurseries by sequentially fragmenting corals. A significant effect of coral genotype was documented for corals grown in a common-garden setting, with fast-growing genotypes growing up to an order of magnitude faster than slow-growing genotypes. Algal-symbiont identity established using qPCR techniques showed that clade A (likely Symbiodinium A3) was the dominant symbiont type for all coral genotypes, except for one coral genotype in the DR and two in Florida that were dominated by clade C, with A- and C-dominated genotypes having similar growth rates. The threatened Caribbean staghorn coral is capable of extremely fast growth, with annual productivity rates exceeding 5 cm of new coral produced for every cm of existing coral. This species benefits from high fragment survivorship coupled by the pruning vigor experienced by the parent colonies after fragmentation. These life-history characteristics make A. cervicornis a successful candidate nursery species and provide optimism for the potential role that active propagation

Identification of a common cyanobacterial symbiont associated with Azolla spp. through molecular and morphological characterization of free-living and symbiotic cyanobacteria.

Science.gov (United States)

Gebhardt, J S; Nierzwicki-Bauer, S A

1991-01-01

Symbiotically associated cyanobacteria from Azolla mexicana and Azolla pinnata were isolated and cultured in a free-living state. Morphological analyses revealed differences between the free-living isolates and their symbiotic counterparts, as did restriction fragment length polymorphism (RFLP) analyses with both single-copy glnA and rbcS gene probes and a multicopy psbA gene probe. RFLP analyses with Anabaena sp. strain PCC 7120 nifD excision element probes, including an xisA gene probe, detected homologous sequences in DNA extracted from the free-living isolates. Sequences homologous to these probes were not detected in DNA from the symbiotically associated cyanobacteria. These analyses indicated that the isolates were not identical to the major cyanobacterial symbiont species residing in leaf cavities of Azolla spp. Nevertheless, striking similarities between several free-living isolates were observed. In every instance, the isolate from A. pinnata displayed banding patterns virtually identical to those of free-living cultures previously isolated from Azolla caroliniana and Azolla filiculoides. These results suggest the ubiquitous presence of a culturable minor cyanobacterial symbiont in at least three species of Azolla. Images PMID:1685078

Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears.

Directory of Open Access Journals (Sweden)

Shigeki Nakagome

Full Text Available Recent studies have reported discordant gene trees in the evolution of brown bears and polar bears. Genealogical histories are different among independent nuclear loci and between biparentally inherited autosomal DNA (aDNA and matrilineal mitochondrial DNA (mtDNA. Based on multi-locus genomic sequences from aDNA and mtDNA, we inferred the population demography of brown and polar bears and found that brown bears have 6 times (aDNA or more than 14 times (mtDNA larger population sizes than polar bears and that polar bear lineage is derived from within brown bear diversity. In brown bears, the effective population size ratio of mtDNA to aDNA was at least 0.62, which deviated from the expected value of 0.25, suggesting matriarchal population due to female philopatry and male-biased migration. These results emphasize that ancestral polymorphisms and sex-biased migration may have contributed to conflicting branching patterns in brown and polar bears across aDNA genes and mtDNA.

Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears.

Science.gov (United States)

Nakagome, Shigeki; Mano, Shuhei; Hasegawa, Masami

2013-01-01

Recent studies have reported discordant gene trees in the evolution of brown bears and polar bears. Genealogical histories are different among independent nuclear loci and between biparentally inherited autosomal DNA (aDNA) and matrilineal mitochondrial DNA (mtDNA). Based on multi-locus genomic sequences from aDNA and mtDNA, we inferred the population demography of brown and polar bears and found that brown bears have 6 times (aDNA) or more than 14 times (mtDNA) larger population sizes than polar bears and that polar bear lineage is derived from within brown bear diversity. In brown bears, the effective population size ratio of mtDNA to aDNA was at least 0.62, which deviated from the expected value of 0.25, suggesting matriarchal population due to female philopatry and male-biased migration. These results emphasize that ancestral polymorphisms and sex-biased migration may have contributed to conflicting branching patterns in brown and polar bears across aDNA genes and mtDNA.

Bearing for liquid metal pump

International Nuclear Information System (INIS)

Dickinson, R.J.; Pennell, W.E.; Wasko, J.

1984-01-01

A liquid metal pump bearing support comprises a series of tangentially oriented spokes that connect the bearing cylinder to the pump internals structure. The spokes may be arranged in a plurality of planes extending from the bearing cylinder to the pump internals with the spokes in one plane being arranged alternately with those in the next plane. The bearing support structure provides the pump with sufficient lateral support for the bearing structure together with the capability of accommodating differential thermal expansion without adversely affecting pump performance

Ultra-precision bearings

CERN Document Server

Wardle, F

2015-01-01

Ultra-precision bearings can achieve extreme accuracy of rotation, making them ideal for use in numerous applications across a variety of fields, including hard disk drives, roundness measuring machines and optical scanners. Ultraprecision Bearings provides a detailed review of the different types of bearing and their properties, as well as an analysis of the factors that influence motion error, stiffness and damping. Following an introduction to basic principles of motion error, each chapter of the book is then devoted to the basic principles and properties of a specific type of bearin

Watchable Wildlife: The Black Bear

Science.gov (United States)

Lynn L. Rogers

1992-01-01

Black bears are the bears people most often encounter. Black bears live in forests over much of North America, unlike grizzlies that live only in Alaska, northern and western Canada, and the northern Rocky Mountains. This brochure presents the latest information on black bear life and how this species responds to an ever-increasing number of campers, hikers, and...

Active magnetic bearings used as exciters for rolling element bearing outer race defect diagnosis.

Science.gov (United States)

Xu, Yuanping; Di, Long; Zhou, Jin; Jin, Chaowu; Guo, Qintao

2016-03-01

The active health monitoring of rotordynamic systems in the presence of bearing outer race defect is considered in this paper. The shaft is assumed to be supported by conventional mechanical bearings and an active magnetic bearing (AMB) is used in the mid of the shaft location as an exciter to apply electromagnetic force to the system. We investigate a nonlinear bearing-pedestal system model with the outer race defect under the electromagnetic force. The nonlinear differential equations are integrated using the fourth-order Runge-Kutta algorithm. The simulation and experimental results show that the characteristic signal of outer race incipient defect is significantly amplified under the electromagnetic force through the AMBs, which is helpful to improve the diagnosis accuracy of rolling element bearing׳s incipient outer race defect. Copyright © 2016 ISA. Published by Elsevier Ltd. All rights reserved.

Variations of the paleo-productivity in benthic foraminifera records in MIS 3 from western South China Sea

Science.gov (United States)

Niu, Y.; Du, J.; Huang, B.; Chen, M.

2010-12-01

Understanding climate change of last glacial age as the background information of climate forecasting is particularly important in climate research. Marine Isotope Stage 3 (MIS 3, 61-24 ka B.P.) is a relative warm and unstable period in the last glacial. Millennium scale abrupt climate changes, such as Heinrich events and Dansgaard-Oeschger (D-O) cycles, are identified in this period. Research topic on the variations of monsoon during the glacial cycles, especially in MIS 3, is critical for understanding low latitude climatic change and the global paleo-environment as a whole. Fortunately, high resolution sedimentary records in western South China Sea provide us valuable materials to uncover how East Asia Summer Monsoon (EASM) system acts in a highly fluctuating climate ambient like MIS 3. Core 17954 is located in the modern summer upwelling area off the Vietnam coast in western South China Sea (SCS), its sediments record the variations of upwelling generated by EASM. In this work, we carry out paleo-ecological analyses on planktonic ( Neogloboquadrina dutertrei, Globigerina bulloides) and benthic foraminifera (Bulimina aculeate, Uvigerina peregrina, Cibicidoides wuellerstorfi, ect.) sampled from Core 17954 to investigate paleo-productivity and nutrition change of western SCS and its relation to EASM. The results show that benthic and planktonic foraminifera have similar responses to nutrition change. Various indicators of productivity on the basis of benthic foraminiferal analyses reflect an overall three stage change trend: productivity gradually increases from the beginning of MIS 3 (60-40 ka) to its maximum during 35-30 ka, and finally declines after 30 ka. There is also another important discovery, if we observe the climate change in MIS 3 as a whole, we can also find western SCS and Northern Hemisphere High latitude have strong correspondences in such changes: Heinrich events coincided with high productivity events in the western SCS. Further, the result of

Genomic Evidence of Widespread Admixture from Polar Bears into Brown Bears during the Last Ice Age.

Science.gov (United States)

Cahill, James A; Heintzman, Peter D; Harris, Kelley; Teasdale, Matthew D; Kapp, Joshua; Soares, Andre E R; Stirling, Ian; Bradley, Daniel; Edwards, Ceiridwen J; Graim, Kiley; Kisleika, Aliaksandr A; Malev, Alexander V; Monaghan, Nigel; Green, Richard E; Shapiro, Beth

2018-05-01

Recent genomic analyses have provided substantial evidence for past periods of gene flow from polar bears (Ursus maritimus) into Alaskan brown bears (Ursus arctos), with some analyses suggesting a link between climate change and genomic introgression. However, because it has mainly been possible to sample bears from the present day, the timing, frequency, and evolutionary significance of this admixture remains unknown. Here, we analyze genomic DNA from three additional and geographically distinct brown bear populations, including two that lived temporally close to the peak of the last ice age. We find evidence of admixture in all three populations, suggesting that admixture between these species has been common in their recent evolutionary history. In addition, analyses of ten fossil bears from the now-extinct Irish population indicate that admixture peaked during the last ice age, whereas brown bear and polar bear ranges overlapped. Following this peak, the proportion of polar bear ancestry in Irish brown bears declined rapidly until their extinction. Our results support a model in which ice age climate change created geographically widespread conditions conducive to admixture between polar bears and brown bears, as is again occurring today. We postulate that this model will be informative for many admixing species pairs impacted by climate change. Our results highlight the power of paleogenomics to reveal patterns of evolutionary change that are otherwise masked in contemporary data.

Mycorrhizal symbionts of Pisonia grandis and P. sechellarum in Seychelles: identification of mycorrhizal fungi and description of new Tomentella species.

Science.gov (United States)

Suvi, Triin; Tedersoo, Leho; Abarenkov, Kessy; Beaver, Katy; Gerlach, Justin; Kõljalg, Urmas

2010-01-01

Nyctaginaceae includes species that are predominantly non-mycorrhizal or form arbuscular or ectomycorrhiza. Root-associated fungi were studied from P. grandis and P. sechellarum roots collected respectively on the islands of Cousin and Silhouette in Seychelles. In addition fungal sporocarps were collected from the sampling area. Fungal symbionts were identified from the roots by anatomotyping and rDNA sequencing; sporocarps collected were examined microscopically and sequenced. Three distantly related ectomycorrhizal fungal species belonging to Thelephoraceae were identified from the roots of P. grandis. Sporocarps also were found for two symbionts and described as new Tomentella species. In addition Tomentella species collected from other Seychelles islands were studied and described as new species if there was no close resemblance to previously established species. P. sechellarum was determined to be an arbuscular mycorrhizal plant; three arbuscular mycorrhizal fungal species were detected from the roots. P. grandis is probably associated only with species of Thelephoraceae throughout its area. Only five Tomentella species are known to form ectomycorrhiza with P. grandis and they never have been found to be associated with another host, suggesting adaptation of these fungi to extreme environmental conditions in host's habitat.

Reciprocal immune benefit based on complementary production of antibiotics by the leech Hirudo verbana and its gut symbiont Aeromonas veronii.

Science.gov (United States)

Tasiemski, Aurélie; Massol, François; Cuvillier-Hot, Virginie; Boidin-Wichlacz, Céline; Roger, Emmanuel; Rodet, Franck; Fournier, Isabelle; Thomas, Frédéric; Salzet, Michel

2015-12-04

The medicinal leech has established a long-term mutualistic association with Aeromonas veronii, a versatile bacterium which can also display free-living waterborne and fish- or human-pathogenic lifestyles. Here, we investigated the role of antibiotics in the dynamics of interaction between the leech and its gut symbiont Aeromonas. By combining biochemical and molecular approaches, we isolated and identified for the first time the antimicrobial peptides (AMPs) produced by the leech digestive tract and by its symbiont Aeromonas. Immunohistochemistry data and PCR analyses evidenced that leech AMP genes are induced in the gut epithelial cells when Aeromonas load is low (starved animals), while repressed when Aeromonas abundance is the highest (post blood feeding). The asynchronous production of AMPs by both partners suggests that these antibiotic substances (i) provide them with reciprocal protection against invasive bacteria and (ii) contribute to the unusual simplicity of the gut microflora of the leech. This immune benefit substantially reinforces the evidence of an evolutionarily stable association between H. verbana and A. veronii. Altogether these data may provide insights into the processes making the association with an Aeromonas species in the digestive tract either deleterious or beneficial.

Scaling laws for radial foil bearings

Science.gov (United States)

Honavara Prasad, Srikanth

The effects of fluid pressurization, structural deformation of the compliant members and heat generation in foil bearings make the design and analysis of foil bearings very complicated. The complex fluid-structural-thermal interactions in foil bearings also make modeling efforts challenging because these phenomena are governed by highly non-linear partial differential equations. Consequently, comparison of various bearing designs require detailed calculation of the flow fields (velocities, pressures), bump deflections (structural compliance) and heat transfer phenomena (viscous dissipation in the fluid, frictional heating, temperature profile etc.,) resulting in extensive computational effort (time/hardware). To obviate rigorous computations and aid in feasibility assessments of foil bearings of various sizes, NASA developed the "rule of thumb" design guidelines for estimation of journal bearing load capacity. The guidelines are based on extensive experimental data. The goal of the current work is the development of scaling laws for radial foil bearings to establish an analytical "rule of thumb" for bearing clearance and bump stiffness. The use of scale invariant Reynolds equation and experimentally observed NASA "rule of thumb" yield scale factors which can be deduced from first principles. Power-law relationships between: a. Bearing clearance and bearing radius, and b. bump stiffness and bearing radius, are obtained. The clearance and bump stiffness values obtained from scaling laws are used as inputs for Orbit simulation to study various cases. As the clearance of the bearing reaches the dimensions of the material surface roughness, asperity contact breaks the fluid film which results in wear. Similarly, as the rotor diameter increases (requiring larger bearing diameters), the load capacity of the fluid film should increase to prevent dry rubbing. This imposes limits on the size of the rotor diameter and consequently bearing diameter. Therefore, this thesis aims

Increased temperature causes different carbon and nitrogen processing patterns in two common intertidal foraminifera (Ammonia tepida and Haynesina germanica)

Science.gov (United States)

Wukovits, Julia; Enge, Annekatrin Julie; Wanek, Wolfgang; Watzka, Margarete; Heinz, Petra

2017-06-01

Benthic foraminifera are highly abundant heterotrophic protists in marine sediments, but future environmental changes will challenge the tolerance limits of intertidal species. Metabolic rates and physiological processes in foraminifera are strongly dependent on environmental temperatures. Temperature-related stress could therefore impact foraminiferal food source processing efficiency and might result in altered nutrient fluxes through the intertidal food web. In this study, we performed a laboratory feeding experiment on Ammonia tepida and Haynesina germanica, two dominant foraminiferal species of the German Wadden Sea/Friedrichskoog, to test the effect of temperature on phytodetritus retention. The specimens were fed with 13C and 15N labelled freeze-dried Dunaliella tertiolecta (green algae) at the start of the experiment and were incubated at 20, 25 and 30 °C respectively. Dual labelling was applied to observe potential temperature effects on the relation of phytodetrital carbon and nitrogen retention. Samples were taken over a period of 2 weeks. Foraminiferal cytoplasm was isotopically analysed to investigate differences in carbon and nitrogen uptake derived from the food source. Both species showed a positive response to the provided food source, but carbon uptake rates of A. tepida were 10-fold higher compared to those of H. germanica. Increased temperatures had a far stronger impact on the carbon uptake of H. germanica than on A. tepida. A distinct increase in the levels of phytodetrital-derived nitrogen (compared to more steady carbon levels) could be observed over the course of the experiment in both species. The results suggest that higher temperatures have a significant negative effect on the carbon exploitation of H. germanica. For A. tepida, higher carbon uptake rates and the enhanced tolerance range for higher temperatures could outline an advantage in warmer periods if the main food source consists of chlorophyte phytodetritus. These conditions are

Bears and pipeline construction in Alaska

Energy Technology Data Exchange (ETDEWEB)

Follmann, E.H.; Hechtel, J.L. (Univ. of Alaska Fairbanks, AK (USA))

1990-06-01

Serious problems were encountered with bears during construction of the 1274-km trans-Alaska oil pipeline between Prudhoe Bay and Valdez. This multi-billion-dollar project traversed both black bear (Ursus americanus Pallas) and grizzly bear (U. arctos L.) habitat throughtout its entire length. Plans for dealing with anticipated problems with bears were often inadequate. Most (71%) problems occurred north of the Yukon River in a previously roadless wilderness where inadequate refuse disposal and widespread animal feeding created dangerous situations. Of the 192 officially reported bear problems associated with the Trans-Alaska Pipeline System (TAPS) (1971-1979), about 65% involved the presence of bears in camps or dumps, 13% the feeding of bears on garbage or handouts, 10% property damage or economic loss, 7% bears under and in buildings, and only 5% charges by bears. Remarkably, no bear-related injuries were reported, suggesting that bears became accustomed to people and did not regard them as a threat. Following construction of the TAPS there have been proposals for pipelines to transport natural gas from Prudhoe Bay to southern and Pacific-rim markets. Based on past experience, some animal control measures were developed during the planning phase for the authorized gas pipeline route in Alaska. Fences installed around 100-person survey camps were found to be effective in deterring bears in two traditionally troublesome areas. 16 refs., 7 figs., 1 tab.

Computational design of rolling bearings

CERN Document Server

Nguyen-Schäfer, Hung

2016-01-01

This book comprehensively presents the computational design of rolling bearings dealing with many interdisciplinary difficult working fields. They encompass elastohydrodynamics (EHD), Hertzian contact theory, oil-film thickness in elastohydrodynamic lubrication (EHL), bearing dynamics, tribology of surface textures, fatigue failure mechanisms, fatigue lifetimes of rolling bearings and lubricating greases, Weibull distribution, rotor balancing, and airborne noises (NVH) in the rolling bearings. Furthermore, the readers are provided with hands-on essential formulas based on the up-to-date DIN ISO norms and helpful examples for computational design of rolling bearings. The topics are intended for undergraduate and graduate students in mechanical and material engineering, research scientists, and practicing engineers who want to understand the interactions between these working fields and to know how to design the rolling bearings for automotive industry and many other industries.

The use of double-decker catcher bearing with face-to-face installed inner layer bearings

Science.gov (United States)

Zhu, Yi-Li; Zheng, Zhong-Qiao

2017-07-01

In active magnetic bearing (AMB) system, the catcher bearings (CB) are indispensable to temporarily support the rotor from directly impacting the stators. In most cases, traditional CB cannot bear the ultra-high speed, vibrations and impacts after a rotor drop event. To address the shortcomings, a double-decker ball bearing (DDBB) with inner two face-to-face angular contact ball bearings are proposed to be used as CB in an AMB system, and the dynamic response of the rotor after a rotor drop event is experimentally analyzed. The results indicate that using a DDBB as a CB helps to reduce the following collision forces after a rotor drop. Larger ball initial contact angles and smaller pre-load force on the inner layer bearings, larger radial clearance of the outer layer bearing and choosing AISI 10AISI 1045 steel which has a larger density for the adapter ring can effectively reduce the maximum impact force after a rotor drop event.

Geologic feasibility of selected chalk-bearing sequences within the conterminous United States with regard to siting of radioactive-waste repositories

International Nuclear Information System (INIS)

Gonzales, S.

1975-11-01

Various geologic and hydrologic parameters are evaluated in relation to assessing the potential for repository storage of high-level radioactive wastes within several stratigraphic sequences dominated by chalks and chalky limestones. The former lithology is defined as a carbonate rock consisting mainly of very fine-grained particles of micritic calcite. Although chalks also contain coarser-grained particles such as shells of fossil foraminifera and non-calcitic minerals like quartz, most contain more than 90 percent micritic material. The latter represents broken fossil coccolith plates. The chalk-dominated formations discussed are exposed and underlie two different physiographic provinces which nevertheless display a general similarity in both being regions of extensive plains. The Niobrara Formation occurs mainly within the Great Plains province, while the Austin Chalk of Texas and the Selma Group of Alabama and Mississippi are located in the western and eastern Gulf Coastal Plain, respectively. The preliminary assessment is that chalk-bearing sequences show some promise and are deserving of added consideration and evaluation. Containment for hundreds of thousands of years would seem possible given certain assumptions. The most promising units from the three studied are the Niobrara Formation and Selma Group. Regional and local conditions make the Austin more suspect